BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012111
         (471 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/448 (73%), Positives = 380/448 (84%), Gaps = 1/448 (0%)

Query: 24  PVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLE 83
           P   ++A KRS G  Q  G+Q++ +KDLS+ILRTE AI  IE+K +S+KY  LWPK VLE
Sbjct: 39  PFLFVRAGKRSSGSSQN-GLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLE 97

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           ALDEAI++ +++ ALKIFGLLR+Q WY+ RCQT+TKL++MLGKCKQPEQASLLFEVMLS+
Sbjct: 98  ALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSE 157

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL+P++DVYTALVSAYG SG LD+AF T+ DMKSVSDCKPDVYTYSILIK CT   RFDL
Sbjct: 158 GLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDL 217

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           IE+I  EMSYLGIECS VTYNTIIDGYGKA  FE MESS + M+ESG C PDIFTLNS I
Sbjct: 218 IERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFI 277

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AYGNSG IEKMEKWY+EF LMG++ DI+T NIL +SYG+A MY+KM SVM+FM+KRF+ 
Sbjct: 278 WAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYS 337

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+VT+NIVIE FG+ G+IEKMEE+F KMKH+G+KPNSITYCSLVSAYSKAG + KVDSI
Sbjct: 338 PTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSI 397

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ+ENSDV LDTPFFNC++SAYGQAGDVE+MGELFL MKER C PDNITFATMIQAYNA
Sbjct: 398 LRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNA 457

Query: 444 LGMTEAAQNLENKMIAMKENSGKKLIQC 471
            GM EAAQNLE  MI  K  SG +LI C
Sbjct: 458 QGMIEAAQNLEVNMITTKNKSGTRLIGC 485


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/444 (73%), Positives = 377/444 (84%), Gaps = 1/444 (0%)

Query: 24  PVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLE 83
           P   ++A KRS G  Q  G+Q++ +KDLS+ILRTE AI  IE+K +S+KY  LWPK VLE
Sbjct: 39  PFLFVRAGKRSSGSSQN-GLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLE 97

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           ALDEAI++ +++ ALKIFGLLR+Q WY+ RCQT+TKL++MLGKCKQPEQASLLFEVMLS+
Sbjct: 98  ALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSE 157

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL+P++DVYTALVSAYG SG LD+AF T+ DMKSVSDCKPDVYTYSILIK CT   RFDL
Sbjct: 158 GLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDL 217

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           IE+I  EMSYLGIECS VTYNTIIDGYGKA  FE MESS + M+ESG C PDIFTLNS I
Sbjct: 218 IERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFI 277

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AYGNSG IEKMEKWY+EF LMG++ DI+T NIL +SYG+A MY+KM SVM+FM+KRF+ 
Sbjct: 278 WAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYS 337

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+VT+NIVIE FG+ G+IEKMEE+F KMKH+G+KPNSITYCSLVSAYSKAG + KVDSI
Sbjct: 338 PTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSI 397

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ+ENSDV LDTPFFNC++SAYGQAGDVE+MGELFL MKER C PDNITFATMIQAYNA
Sbjct: 398 LRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNA 457

Query: 444 LGMTEAAQNLENKMIAMKENSGKK 467
            GM EAAQNLE  MI  K  SG +
Sbjct: 458 QGMIEAAQNLEVNMITTKNKSGTR 481


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/472 (68%), Positives = 387/472 (81%), Gaps = 10/472 (2%)

Query: 1   MHLSNSIFTPPTTATHLPKFYKE-------PVFRIQAIKRSPGPIQELGIQKEAEKDLSK 53
           ++ S SI TPPT   HL K  KE       P+  I +   S   I  +G ++  +K+LS+
Sbjct: 11  LYWSYSISTPPTI--HLIKVLKERNFHSDPPILGIHSSNLSSDLIP-VGPKRHTKKELSR 67

Query: 54  ILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR 113
            LRT+ AIK IE+K  S KY  LWPK VLEALD+AIK+++W+ ALKIF LLR+Q WY+ R
Sbjct: 68  FLRTDAAIKAIEQKADSSKYNRLWPKAVLEALDDAIKERRWKSALKIFELLRKQHWYEPR 127

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           CQT+TKL++MLGKC+QPE+A LLFEVM ++GL+P++DVYTALVSAYG+SGLL +AFST++
Sbjct: 128 CQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVD 187

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +MKSVSDCKPDVYTYS+LI  CTK HRFDLI +IL+EMSYLG+ECS VT+NTII+GYGKA
Sbjct: 188 EMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKA 247

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K F EME+S + M+E G   PD+FT NS+I AYGNSG IEKMEKWYNEF LMG+  DI+T
Sbjct: 248 KMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKT 307

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            NIL KSYG+AGMY+K+ SV++FM+KRFF PTVVTYNI+IETFG+AG IE M+EYFK MK
Sbjct: 308 FNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMK 367

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           H GMKPN+ITYCSLVSAYSKAGL+MKV+SILRQVENSDV+LDT FFNCII+AYGQAGDV+
Sbjct: 368 HLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVD 427

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           KM ELFL M+ER C+PDN+TFATMIQAY   GMTEAAQ LE  M+A K NSG
Sbjct: 428 KMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAAKGNSG 479


>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
 gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/474 (67%), Positives = 386/474 (81%), Gaps = 13/474 (2%)

Query: 1   MHLSNSIFTPPT-------TATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSK 53
           M  S SI TPP+            P+F       IQ+ K  P P    G+Q++++K+LS+
Sbjct: 1   MSWSLSISTPPSKNLLTGSNGNQDPQF-----LTIQSSKWCPDPTST-GLQRQSKKELSR 54

Query: 54  ILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR 113
           ILRTE AIK IE+K +SKKY NLWPK VLEALD+AIK+ +W+ ALKIF LLR+Q WY+ R
Sbjct: 55  ILRTEAAIKAIEQKANSKKYNNLWPKAVLEALDDAIKENQWESALKIFELLRKQHWYEPR 114

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +T+TKL++MLGKC+QPE+ S LFEVMLSDGLKP++DVYTALVSAYG+SG LD+AFS + 
Sbjct: 115 TKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVV 174

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +MK++S+CKPDVYTYSILI  C K HRF+LI  ILAEMSYLGIECS VTYNTIIDGYGKA
Sbjct: 175 EMKAISECKPDVYTYSILINCCIKLHRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKA 234

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K FEEME++ + M+ESG   PD+FT NS+I AYG+ G I+KMEKWY EF LMG++ DI+T
Sbjct: 235 KMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKT 294

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            NIL +SYG+AGMY KMRSV++FM+KRFF P++VT+NI IETFGKAG IE MEEYF KMK
Sbjct: 295 FNILIRSYGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMK 354

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           H G+KPN++TYCSLVSAYSKAG IMKVDSILRQVENSDVILDTPFFNC+ISAYG+AGD+E
Sbjct: 355 HLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIE 414

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467
           KM ELFL M+ R C PD+ITFATMIQAYNA GM EAAQ +EN MIA ++NSG +
Sbjct: 415 KMSELFLGMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIATRKNSGMR 468


>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/463 (66%), Positives = 379/463 (81%), Gaps = 1/463 (0%)

Query: 9   TPPTTATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKV 68
           TP T++T+         FR++++KRS  P     + K+  KDLS+ILRTE AI+ +  K 
Sbjct: 20  TPFTSSTNRSPPKTRRGFRVESLKRSSKPASA-ELVKDPNKDLSRILRTEAAIRGVHNKA 78

Query: 69  SSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK 128
            S  +K LWPK +LE+LD+AIK+ +   AL+IF LLR+Q WYQ RC+T+ KL++MLGKC+
Sbjct: 79  KSSSHKQLWPKALLESLDDAIKRCRSHSALEIFALLRKQYWYQPRCRTYAKLLMMLGKCR 138

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           QPE+ASLLFE+MLS+GLKP+VDVYTALVSAYGQSGLLD+AFST+ DMKSV DC+PDVYTY
Sbjct: 139 QPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTY 198

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SILI+ C KF RFDLIE +LAEMSYLGI+C+ VTYN+IIDGYGKA  FE+M+ + + M+E
Sbjct: 199 SILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMIE 258

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           +G  HPD+FTLNS + AYGN+G I+KMEKWY+EF LMG+K DI T N + KSYG+AGMY+
Sbjct: 259 NGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYE 318

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           KM++VMDFM+KRFF PT+VTYN VIE FGKAG IEKM+++F KMKH G+KPNSITYCSLV
Sbjct: 319 KMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLV 378

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
           SAYSK G I KVDSI+R VENSDV+LDTPFFNCIISAYGQAG+++KMGELFL M+ER C 
Sbjct: 379 SAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLAMRERKCE 438

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           PDNITFA MIQ+YN  GMTEA QNLEN MI+ K + G KLI C
Sbjct: 439 PDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGTKLIGC 481


>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 511

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/458 (67%), Positives = 371/458 (81%), Gaps = 3/458 (0%)

Query: 10  PPTTATHLPK--FYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKK 67
           P T +T  P    +    FR+ ++KRS  P  E G+QK+ +KDLS+ILRTE AIK +E K
Sbjct: 27  PITCSTKFPNKNHFHSSSFRVYSLKRSSKPSYE-GLQKDPKKDLSRILRTEAAIKGVENK 85

Query: 68  VSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC 127
             S K+K LWPK VLEALD+AIK  +WQ AL IF LLR Q WY+ RCQT+TKL++ML KC
Sbjct: 86  AKSWKHKQLWPKAVLEALDDAIKGCQWQNALMIFELLRNQYWYEPRCQTYTKLLMMLSKC 145

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           KQP++AS L+E ML +GLKP+VDV TALVSAYGQSGL   AFSTI DMKSV DCKPDVYT
Sbjct: 146 KQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYT 205

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           YS+LI  C KF RFDLIE++LA+MSY GIEC++VTYN+IIDGYGKA  FE+ME+S + M+
Sbjct: 206 YSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMI 265

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+  C PD+FTLNS+I +YGN G I+KMEKWY+EF LM +K DI+T N++ KSYG+AGMY
Sbjct: 266 ENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMY 325

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           DKM+SVMDFM++RFF PT+VTYN VIE +GKAG IEKM+++FK MKH GMKPNS+TYCSL
Sbjct: 326 DKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSL 385

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           V+AYSKAGLI K+DSILR VENSDVILDTPFFNCIISAYGQ GD++KMGELFL M+ R C
Sbjct: 386 VNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKC 445

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            PD  TF  MIQAYN  G+TEAA+NLE  MI+ K++SG
Sbjct: 446 EPDRTTFTCMIQAYNTQGITEAAKNLETMMISAKDSSG 483


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 289/421 (68%), Positives = 353/421 (83%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIF 101
            +Q++ +K LS+ILR + AIK IE+K +SKKY NLWPK VLEALDEAI++  W+ ALKIF
Sbjct: 55  ALQRDPKKGLSRILRRDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALKIF 114

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           GLLRQQQWY+ RCQT+TKL+++LGKCKQPEQASLLFE+M S+GLKPS+DVYTALVSAYGQ
Sbjct: 115 GLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQ 174

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           SGLL +A ST+++MKS+SDCKPDV+TYSILI  CT+  RFDL++KILA+MS LGI C+ V
Sbjct: 175 SGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTV 234

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TYNTII+G+GKAK FE+MES    M+ES  C PD+ T N+ I AYGNS  IEKMEKWY E
Sbjct: 235 TYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKE 294

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
           F LMG++ DI T N +  SYG+AGMYDKM+SV++FM+KRFF PT+VT N +I++FG+AG+
Sbjct: 295 FQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGN 354

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           IE+MEEYFK MK +GMKPNS+TYCSLV+AY K+G + KVDSILRQ+ENSDV+ DTP FNC
Sbjct: 355 IEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNC 414

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +I+ YGQAG+V KMGELFL MKE  CVPD ITFATMI+A  A GMTE AQ LENK+IA  
Sbjct: 415 LINVYGQAGNVRKMGELFLEMKENKCVPDGITFATMIRALKAQGMTEDAQRLENKLIATN 474

Query: 462 E 462
           +
Sbjct: 475 D 475


>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
 gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
           thaliana]
          Length = 447

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/420 (66%), Positives = 345/420 (82%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGL 103
           Q + +K+LS+ILRT+ A+K IE+K +S+KY  LWPK VLEALDEAIK+ +WQ ALKIF L
Sbjct: 24  QVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNL 83

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           LR+Q WY+ RC+T+TKL  +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S 
Sbjct: 84  LRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSE 143

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
           LLD+AFST+  MKSVSDCKPDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTY
Sbjct: 144 LLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTY 203

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           NTIIDGYGKA  FEEMES  + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F 
Sbjct: 204 NTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQ 263

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
           LMGV+ DI T NIL  S+G+AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IE
Sbjct: 264 LMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIE 323

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           KM++ F+KMK++G+KPNSITYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII
Sbjct: 324 KMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCII 383

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +AYGQAGD+  M EL++ M+ER C PD ITFATMI+ Y A G+ +A Q LE +MI+  EN
Sbjct: 384 NAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGEN 443


>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 499

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/424 (65%), Positives = 347/424 (81%), Gaps = 2/424 (0%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGL 103
           Q + +K+LS+ILRT+ A+K IE+K +S+KY  LWPK VLEALDEAIK+ +WQ ALKIF L
Sbjct: 74  QVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNL 133

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           LR+Q WY+ RC+T+TKL  +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S 
Sbjct: 134 LRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSE 193

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
           LLD+AFST+  MKSVSDCKPDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTY
Sbjct: 194 LLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTY 253

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           NTIIDGYGKA  FEEMES  + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F 
Sbjct: 254 NTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQ 313

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
           LMGV+ DI T NIL  S+G+AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IE
Sbjct: 314 LMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIE 373

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           KM++ F+KMK++G+KPNSITYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII
Sbjct: 374 KMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCII 433

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +AYGQAGD+  M EL++ M+ER C PD ITFATMI+ Y A G+ +A Q LE +MI+   +
Sbjct: 434 NAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMIS--SD 491

Query: 464 SGKK 467
            GKK
Sbjct: 492 IGKK 495


>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 439

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/420 (63%), Positives = 335/420 (79%), Gaps = 11/420 (2%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGL 103
           Q + +K+LS+ILRT+ A+K IE+K +S+KY  LWPK VLEALDEAIK+ +WQ ALKIF L
Sbjct: 24  QIDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFHL 83

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           LR+Q WY+ +C+T+TKL  +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L++ YG+S 
Sbjct: 84  LRKQHWYEPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSE 143

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
           LLD+AFST+  MKSVSDCKPDV+T+++LI+ C K  RFDL+++I+ EMSYLG+ CS VTY
Sbjct: 144 LLDKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCSTVTY 203

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           NTIIDGYGKA  FEEME+  + M+E G   PD+FTLNS+I   G+S  +   E       
Sbjct: 204 NTIIDGYGKAGMFEEMENVLADMIEDGDSLPDVFTLNSII---GSSEMVAHEED------ 254

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G   DI T NIL  S+G+AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IE
Sbjct: 255 --GELPDITTFNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKAGKIE 312

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           KM++ F+KMK++G+KPNSI+YCSLV+AYSKAGL+ K+DSILRQ+ NSDV+LDTPFFNCII
Sbjct: 313 KMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSDVVLDTPFFNCII 372

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +AYGQAGD+  M EL++ M+ER C PD ITFATMI+ Y A G+ +A Q LE +MI+  EN
Sbjct: 373 NAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKAHGIFDAVQELEKQMISTGEN 432


>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
 gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
          Length = 480

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 249/426 (58%), Positives = 323/426 (75%), Gaps = 3/426 (0%)

Query: 32  KRSPGPIQELGIQKEAEKD-LSKILRTEFAIKNIEKKVSSKKYK--NLWPKPVLEALDEA 88
           K S  P   +G  +  + D L++ILRTE A+  + +K ++ + +  NLWP+ VLEALD A
Sbjct: 41  KPSSSPSTRVGEAEHEQPDALARILRTEAAVSGVSRKAAAARQQSTNLWPRAVLEALDSA 100

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +   +W+ AL+IF LLR+Q WY+ R QT+ +L++MLGKC+QP  A+ LF+ MLS+ L+P+
Sbjct: 101 VAACRWESALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPT 160

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
            DVYTALV AYG SGLLDEA + +  MK  +DCKPD YT+S+LI  C K  RFDLI  +L
Sbjct: 161 ADVYTALVGAYGYSGLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKSRRFDLIPAVL 220

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EMSYLGIEC++V +N IIDGYGKA  FEEME + SAM+ESG   PDI+T+NS+I AYGN
Sbjct: 221 DEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGN 280

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  ++MEK Y+EF LMGV+ D +T NI+ KSYG+AGMYDKM S+  +M+KRFF PT VT
Sbjct: 281 HGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSIFRYMKKRFFSPTAVT 340

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           +N VIE FG+AG+IEKME YF+ MK +G+KPN ITYCSLV+ YSKAGL+ KV  I+RQ E
Sbjct: 341 FNTVIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIRQTE 400

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           N++V+LDTPFFNC+ISAY ++GD++ M E+   MKE+ C PD IT+ATMIQAY A GM E
Sbjct: 401 NTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKKCKPDKITYATMIQAYTAQGMDE 460

Query: 449 AAQNLE 454
           AA+ LE
Sbjct: 461 AARLLE 466


>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
          Length = 450

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/427 (58%), Positives = 322/427 (75%), Gaps = 7/427 (1%)

Query: 32  KRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKV---SSKKYKNLWPKPVLEALDEA 88
           +  P P      Q EA   LS+ILRTE A+  + +K    S ++   LWP+ VLEALD A
Sbjct: 7   RHKPPPSAPEAEQPEA---LSRILRTEAAVSGVSRKAAAASRQQSTRLWPRAVLEALDSA 63

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +   +W+ AL+IF LLR+QQWY+ R QT+ +L++MLGKC+QP  A+ LF+VMLS+ LKP+
Sbjct: 64  VASCRWESALEIFELLRKQQWYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSERLKPT 123

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           VDVYTALV AYG SGLLDEA +T+  MK V+DCKPD YT+S+LI  C+K  RFD I  IL
Sbjct: 124 VDVYTALVGAYGYSGLLDEALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAIL 183

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EMSYLG++C+AV +N IIDGYGKA   EEME++ ++M+E G   PDI+T+NS+I AYGN
Sbjct: 184 DEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGN 243

Query: 269 SGN-IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            GN I +ME+WY+EF LMGV+ D QT NI+ KSYG A M+DKM SV+ +M+K FF PTVV
Sbjct: 244 HGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVV 303

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T+NI+IE+FG+AG+IEKME YF+ MK +G+KPN ITYCSLV+ YSKAG + KV  I+RQ 
Sbjct: 304 TFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQT 363

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           EN+DV+LDTPFFNC+I AY ++GD++ M E+   MKE+ C PD +T+ TMIQAYN  GM 
Sbjct: 364 ENTDVVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHGMD 423

Query: 448 EAAQNLE 454
           EAA  L+
Sbjct: 424 EAANLLK 430


>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
 gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
          Length = 442

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/415 (58%), Positives = 320/415 (77%), Gaps = 4/415 (0%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYKN---LWPKPVLEALDEAIKQKKWQLALKI 100
           + E  + LS+ILRTE A+  + +K ++   ++   LWP+ VLEALD A+   +W+ AL+I
Sbjct: 16  EAEQPEALSRILRTEAAVSGVSRKAAAASRQHSTRLWPRAVLEALDSAVASCRWEPALEI 75

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F LLR+QQWY+ R QT+ +L++MLGKC+QP  A+ LF+VMLS+ LKP+VDVYTALV AYG
Sbjct: 76  FELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYG 135

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            SGLLD+A +T+  MK V+DCKPD YT+S+LI  C+K  RFD I  IL EMSYLG++C+A
Sbjct: 136 YSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNA 195

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWY 279
           V +N IIDGYGKA   EEME++ ++M+E G   PDI+T+NS+I AYGN GN I +ME+WY
Sbjct: 196 VIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWY 255

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +EF LMGV+ D QT NI+ KSYG A M+DKM SV+ +M+K FF PTVVT+NI+IE+FG+A
Sbjct: 256 SEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRA 315

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G+IEKME YF+ MK +G+KPN ITYCSLV+ YSKAG + KV  I+RQ EN+DV+LDTPFF
Sbjct: 316 GNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFF 375

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           NC+I AY ++GD++ M E+   MKE+ C PD +T+ TMIQAYN  GM EAA  L+
Sbjct: 376 NCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHGMDEAANLLK 430


>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
          Length = 450

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/415 (58%), Positives = 320/415 (77%), Gaps = 4/415 (0%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYKN---LWPKPVLEALDEAIKQKKWQLALKI 100
           + E  + LS+ILRTE A+  + +K ++   ++   LWP+ VLEALD A+   +W+ AL+I
Sbjct: 16  EAEQPEALSRILRTEAAVSGVSRKAAAASRQHSTRLWPRAVLEALDSAVASCRWEPALEI 75

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F LLR+QQWY+ R QT+ +L++MLGKC+QP  A+ LF+VMLS+ LKP+VDVYTALV AYG
Sbjct: 76  FELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYG 135

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            SGLLD+A +T+  MK V+DCKPD YT+S+LI  C+K  RFD I  IL EMSYLG++C+A
Sbjct: 136 YSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNA 195

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWY 279
           V +N IIDGYGKA   EEME++ ++M+E G   PDI+T+NS+I AYGN GN I +ME+WY
Sbjct: 196 VIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWY 255

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +EF LMGV+ D QT NI+ KSYG A M+DKM SV+ +M+K FF PTVVT+NI+IE+FG+A
Sbjct: 256 SEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRA 315

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G+IEKME YF+ MK +G+KPN ITYCSLV+ YSKAG + KV  I+RQ EN+DV+LDTPFF
Sbjct: 316 GNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFF 375

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           NC+I AY ++GD++ M E+   MKE+ C PD +T+ TMIQAYN  GM EAA  L+
Sbjct: 376 NCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHGMDEAANLLK 430


>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
          Length = 485

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/418 (56%), Positives = 313/418 (74%), Gaps = 2/418 (0%)

Query: 39  QELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYK--NLWPKPVLEALDEAIKQKKWQL 96
           +E   + E    L++ILRTE AI  + +K ++ + +  NLWP+ VLEALD A+   +W+ 
Sbjct: 48  RETEAEYEQPDALARILRTEAAISGVSRKAAAARQQSTNLWPRAVLEALDSAVAACRWES 107

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+IF LLR+Q WY+ R QT+ +L++MLGKC+QP  A+ LF  MLS+ L+P+ DVYTAL+
Sbjct: 108 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGLFREMLSERLRPTADVYTALI 167

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG SGLL+ A + +  MK  +DCKPD YT+S+L+  C K  RFDLI  +L EMSYLGI
Sbjct: 168 GAYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCAKSRRFDLIPAVLDEMSYLGI 227

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           EC++V +N IIDGYGKA  FEEME + S M+ESG   PDI+T+NS++ AYGN G  ++ME
Sbjct: 228 ECNSVIHNAIIDGYGKAAMFEEMEGALSTMLESGSNVPDIYTMNSVVGAYGNHGRTDEME 287

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K Y+EF LMGV+ D +T NI+ +SYG+AGMY KM S+  +M+KRFF PT VT+N VIE F
Sbjct: 288 KSYSEFQLMGVEPDTKTFNIMIRSYGKAGMYVKMMSIFRYMKKRFFSPTAVTFNTVIECF 347

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           G+AG IEKME YF+ MK +G+KPN ITYCSLV+ YSKAGL+ KV  ++RQ EN++V+LDT
Sbjct: 348 GRAGDIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVAGVIRQTENTNVVLDT 407

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           PFFNC+ISAY ++GD++ M E+   MKE+ C PD IT+ATMIQAY A GM EAA  LE
Sbjct: 408 PFFNCVISAYAKSGDIKIMEEMLQLMKEKRCKPDRITYATMIQAYTAHGMDEAAMLLE 465


>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Brachypodium distachyon]
          Length = 454

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/413 (54%), Positives = 305/413 (73%), Gaps = 6/413 (1%)

Query: 48  EKDLSKILRTEFAIKNIEKKVSS-----KKYKNLWPKPVLEALDEAIKQKKWQLALKIFG 102
           + +L+ ILR E A+  + +K ++     ++   LWP+ VLEALD A+    W+ AL+IF 
Sbjct: 22  DAELASILRAEAAVSGVSRKATAAVSQQQQSTRLWPRAVLEALDSAVASCHWESALEIFE 81

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQ 161
           L+R+Q+WY+ R +T+ +L++MLGKC+QP  A+ LF VMLS+  L P+VDVYTALV AYG 
Sbjct: 82  LMRKQRWYEPRTRTYARLLMMLGKCRQPGPAAALFRVMLSEERLAPTVDVYTALVGAYGY 141

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           SG+LDEA +T+  MK  +DCKPD YT+SILI  C K  RFDLI  +L EMSYLGI C+ V
Sbjct: 142 SGMLDEALATVELMKGAADCKPDEYTFSILINCCCKSRRFDLIPPVLDEMSYLGIGCNVV 201

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            +N IIDGYGKA    EM ++   M+E G   PDI+T+NS+I AYGN G ++ MEKWY+E
Sbjct: 202 IHNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVDDMEKWYSE 261

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
           F LMGV+ D +T NI+ KSYG+A M++KM  V+ +M++RFF PT  T+NI+IE FG+AG 
Sbjct: 262 FQLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIECFGRAGD 321

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           IEKME YF+ MK +G+KPN ITYCSLV+ YSKAG++ KV +I+RQ EN+DV+LDTPFFNC
Sbjct: 322 IEKMEYYFRLMKIQGIKPNPITYCSLVNGYSKAGILDKVPAIIRQTENTDVVLDTPFFNC 381

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +I+AY ++GD++ M E+   MKE+ C P  + + TMIQAY A GM EAA+ LE
Sbjct: 382 VINAYAKSGDIKIMEEMLQLMKEKKCKPGKVIYTTMIQAYIAHGMDEAAKLLE 434


>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Vitis vinifera]
 gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/417 (48%), Positives = 284/417 (68%)

Query: 41  LGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKI 100
           + ++  ++K +S ILR E     IEKK      K L P+ VLEAL E I   +W+ ALK+
Sbjct: 65  VALKIASKKAISVILRREATKAVIEKKRGPNNSKKLLPRTVLEALHERITALRWESALKV 124

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F LLR+Q WY+     + KL+VMLGKCKQPE+A  LF  M+ +G   + + YTAL+SAY 
Sbjct: 125 FELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYS 184

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           +SGL D+AFS +  MK+  DC+PDV+TYS+LIKSC +   FD +  +L++M+  GI+ + 
Sbjct: 185 RSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNT 244

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTYNT+ID YGKAK+F EMES+   M+  G C PD++T+NS + A+G+SG IE MEK Y 
Sbjct: 245 VTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYE 304

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +F   G++ +I+T NIL  SYG+A  Y+KM +VM++MQK  F  T+VTYN+VI+ FG+AG
Sbjct: 305 KFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAG 364

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +++ME  F+ M+   +KP+ +T CSLV AY +AG   K+  +LR +ENSDV+LD  FFN
Sbjct: 365 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFN 424

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           C++ AYG+ G   +M  +   MK++ C PD IT+ TMI+AY   GMT  A+ L+  M
Sbjct: 425 CLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGGMTSCAKELQGLM 481


>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 636

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/409 (48%), Positives = 279/409 (68%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           + K +S ILR E     IEKK      K L P+ VLEAL E I   +W+ ALK+F LLR+
Sbjct: 88  SRKAISVILRREATKAIIEKKRGPTNSKKLLPRTVLEALHERITALRWESALKVFELLRE 147

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q WY+     + KL+VMLGKCKQPE+A  LF+ M+ +G   S + YTAL+SAYG+SGLLD
Sbjct: 148 QIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLD 207

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +AFS + +MK   DC+PDV+TYSILIKSC +   FD  + +L+ M  LGI  + +TYNT+
Sbjct: 208 KAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTL 267

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ID YGKAK FEEME++   M+    C PD++T+NS + A+G SG IE MEK Y +F   G
Sbjct: 268 IDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAG 327

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++  I T N+L  SYG+AG Y KM +VM++MQK  +  T++TYNIVI+ FG+AG +++ME
Sbjct: 328 IEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQME 387

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ M+   +KP+ +T CSLV AY +A    K++ +LR +ENSD+ LDT FFNC++ AY
Sbjct: 388 YLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDAY 447

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
           G+ G   +M  + + M+++   PD IT+ TMI+AY++ GMT+  + L++
Sbjct: 448 GRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSSKGMTKHVKELQD 496



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 313 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           V + ++++ ++ P    Y  +I   GK    EK  E F+ M H G   +  +Y +L+SAY
Sbjct: 141 VFELLREQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAY 200

Query: 372 SKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            ++GL+ K  S+L +++ N D   D   ++ +I +  Q    +K   L   M+     P+
Sbjct: 201 GRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPN 260

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            IT+ T+I AY    M E  +    KM++ +
Sbjct: 261 TITYNTLIDAYGKAKMFEEMEATLVKMLSQQ 291


>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 511

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/428 (46%), Positives = 289/428 (67%), Gaps = 1/428 (0%)

Query: 39  QELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLAL 98
           +E+  +  ++K +S ILR E     IE+K      K L P+ VLEAL + I   +W+ AL
Sbjct: 80  EEVNRKIASQKAISVILRREATKAVIERKRGPNNSKKLLPRTVLEALHDRITTLRWESAL 139

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           K+F LLR+Q WY+     + KL+VMLGKCKQ E+A  LF+ M+ +G + S + YTAL+SA
Sbjct: 140 KVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSA 199

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y +SGLLDEAFS +N+MK+  DC+PDV+TYSILIKSC +   F+  + +L++M   GI+ 
Sbjct: 200 YSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKP 259

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + +TYNT ID YGKAK F EMES    M+   GC PD++T+NS + A+G SG +E MEK 
Sbjct: 260 NTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKC 319

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +F   G++  IQT NIL  SYG+A  Y+KM +VM++MQK  +  T+VTYNIVI+ FG+
Sbjct: 320 YEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 379

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG++++ME  F+ M+   +KP+ +T CSLV AY +AG   K+DS+L  VENSD++LDT F
Sbjct: 380 AGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVF 439

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +NC++ AYG+     +M ++   M++R C PD  T+ TM +AY+  GM   A+ ++ ++I
Sbjct: 440 YNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQ-ELI 498

Query: 459 AMKENSGK 466
              E S +
Sbjct: 499 TTAEPSKR 506


>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 456

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/428 (46%), Positives = 289/428 (67%), Gaps = 1/428 (0%)

Query: 39  QELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLAL 98
           +E+  +  ++K +S ILR E     IE+K      K L P+ VLEAL + I   +W+ AL
Sbjct: 25  EEVNRKIASQKAISVILRREATKAVIERKRGPNNSKKLLPRTVLEALHDRITTLRWESAL 84

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           K+F LLR+Q WY+     + KL+VMLGKCKQ E+A  LF+ M+ +G + S + YTAL+SA
Sbjct: 85  KVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSA 144

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y +SGLLDEAFS +N+MK+  DC+PDV+TYSILIKSC +   F+  + +L++M   GI+ 
Sbjct: 145 YSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKP 204

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + +TYNT ID YGKAK F EMES    M+   GC PD++T+NS + A+G SG +E MEK 
Sbjct: 205 NTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKC 264

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +F   G++  IQT NIL  SYG+A  Y+KM +VM++MQK  +  T+VTYNIVI+ FG+
Sbjct: 265 YEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 324

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG++++ME  F+ M+   +KP+ +T CSLV AY +AG   K+DS+L  VENSD++LDT F
Sbjct: 325 AGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVF 384

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +NC++ AYG+     +M ++   M++R C PD  T+ TM +AY+  GM   A+ ++ ++I
Sbjct: 385 YNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQ-ELI 443

Query: 459 AMKENSGK 466
              E S +
Sbjct: 444 TTAEPSKR 451


>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
 gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
          Length = 492

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/402 (47%), Positives = 271/402 (67%), Gaps = 1/402 (0%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           + K LS ILR E     ++K+   K  + L P  VLEAL E +   +W  ALK+F L+R 
Sbjct: 74  SRKALSVILRREATKAVLDKRKPGKGTRRLLPGTVLEALHERVAALRWDSALKVFELMRD 133

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q WY+     + KL+ MLGKCK+PE+A  LF+ M+ +G  P+++ YTALVSAY +SG   
Sbjct: 134 QVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGRFH 193

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EAF+ ++ MK    C+PDV TYSILIKSC   + F+ ++ +L +M+  GI  + VTYNT+
Sbjct: 194 EAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARAGIRPNTVTYNTL 253

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ID YGKA++F EMES+   M+ S  C PDI+T+NS + A+G+SG IE ME  Y +F   G
Sbjct: 254 IDAYGKARRFPEMESTLLKML-SQNCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASG 312

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  +I+T NIL  SYG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+AG +E+ME
Sbjct: 313 IVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQME 372

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ MK   +KPN +T CS+V AY +AG + K+ ++LR VENSD+ LD  FFNC++ AY
Sbjct: 373 YIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSDITLDIVFFNCLVDAY 432

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           G+ G + +M ++   MKE  C PD +T ATMI+ +   G+ +
Sbjct: 433 GRVGCLAEMWDILDLMKEHRCKPDKVTCATMIKWFLIKGIDD 474



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)

Query: 307 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           +D    V + M+ + ++ P +  Y  +I   GK    EK  E F+ M   G  PN  +Y 
Sbjct: 121 WDSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYT 180

Query: 366 SLVSAYSKAGLIM------------------------------------KVDSILRQVEN 389
           +LVSAYS++G                                       KV S+L  +  
Sbjct: 181 ALVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMAR 240

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           + +  +T  +N +I AYG+A    +M    L M  ++C PD  T  + ++A+ + G  E 
Sbjct: 241 AGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIET 300

Query: 450 AQNLENKMIA 459
            ++   K  A
Sbjct: 301 MESCYEKFQA 310


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/410 (45%), Positives = 273/410 (66%), Gaps = 1/410 (0%)

Query: 39  QELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLAL 98
           +E+  +  + K LS ILR E     ++K+   K  + L P+ VLEAL E I   +W  AL
Sbjct: 85  EEVNRKIASRKALSVILRREATKAVLDKRKPGKGTRRLLPRTVLEALHERITALRWDSAL 144

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           K+F L+R Q WY+     + KL+ MLGKCKQPE+A  LF+ M+ +G  P+++ YTALVSA
Sbjct: 145 KVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSA 204

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y +SG  D AFS +  MK+   C+PDV TYSILIKSC   + F+ ++ ++ +M+  GI  
Sbjct: 205 YSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRP 264

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + VTYNT+ID YGKA +F EMES+   M+ +  C PD++T+NS + A+G SG IE ME  
Sbjct: 265 NVVTYNTLIDAYGKAGRFAEMESTLLEML-TENCKPDVWTMNSTLRAFGGSGQIETMESC 323

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +F   G+  +I+T NIL  SYG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+
Sbjct: 324 YEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGR 383

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG +E+ME  F+ MK   +KPN +T CSLV AY +AG + K+ ++LR VENSD+ LD  F
Sbjct: 384 AGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLDIVF 443

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           FNC++ A+G+ G + +M ++   MK + C PD +T  TMI+ +   G+ +
Sbjct: 444 FNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKWFLIKGIDD 493



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 37/265 (13%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--- 187
           E+   L E M   G++P+V  Y  L+ AYG++G   E  ST+ +M +  +CKPDV+T   
Sbjct: 248 ERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLT-ENCKPDVWTMNS 306

Query: 188 --------------------------------YSILIKSCTKFHRFDLIEKILAEMSYLG 215
                                           Y+IL+ S  K   ++ +  ++  M    
Sbjct: 307 TLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 366

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              + VTYN +ID +G+A   E+ME  F  M +S    P+  TL S++ AYG +G+++K+
Sbjct: 367 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLM-KSERIKPNCVTLCSLVRAYGRAGDVKKI 425

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           +          +  DI   N L  ++GR G   +M  V+D M+ +   P  VT   +I+ 
Sbjct: 426 KTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKW 485

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPN 360
           F   G  +   +Y + +K    K N
Sbjct: 486 FLIKGIDDHRVQYLRDLKDGRSKDN 510



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 37/190 (19%)

Query: 307 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           +D    V D M+ + ++ P V  Y  +I   GK    E+  E F+ M   G  PN  +Y 
Sbjct: 140 WDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYT 199

Query: 366 SLVSAYSKAGLIMKVDSILRQ----------VENSDVILDTPF----------------- 398
           +LVSAYS++G   +  S+L Q          V+   +++ +                   
Sbjct: 200 ALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMAR 259

Query: 399 ---------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                    +N +I AYG+AG   +M    L M   +C PD  T  + ++A+   G  E 
Sbjct: 260 AGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIET 319

Query: 450 AQNLENKMIA 459
            ++   K  A
Sbjct: 320 MESCYEKFQA 329


>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Glycine max]
          Length = 515

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/381 (48%), Positives = 261/381 (68%)

Query: 74  KNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA 133
           K L P+ VLEAL E +   +W+ ALK+F LL +Q WY+     + KL+VMLGKCKQPE+A
Sbjct: 117 KKLLPRTVLEALHERVTALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKA 176

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             LF+ M+ +G     + YTAL+SAY +SGLLD+AFS + +MK+   C+PDV TYSIL+K
Sbjct: 177 HELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLK 236

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
           SC +   FD I+ +L++M+  GI+ + VTYNT+ID YGKA+KF EMES    M+    C 
Sbjct: 237 SCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESILVEMLADRYCQ 296

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD++T+NS + A+GN G IE MEK Y +F   G++ ++QT NIL  SYG+A  Y KM +V
Sbjct: 297 PDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAV 356

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           M++MQK  +  T+VT+NIVI+ FGKAG +++ME  F+ M+   +KP+ +T CSLV AY++
Sbjct: 357 MEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYAR 416

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           AG   K+  +LR VENSDV+LDT FFNC++ AY + G + +M  +   MK+  C PD +T
Sbjct: 417 AGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMMKQNGCKPDIVT 476

Query: 434 FATMIQAYNALGMTEAAQNLE 454
           + TMI+ Y   GM   A+ L 
Sbjct: 477 YRTMIKTYTYKGMDSHAKELR 497



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 41/235 (17%)

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A ++E     F  + E     PD      +I   G     EK  + +      G   D +
Sbjct: 134 ALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCE 193

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +   L  +Y R+G+ DK  S+++ M+      P V TY+I++++  +    +K++     
Sbjct: 194 SYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSD 253

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M +RG+KPN++T                                   +N +I AYG+A  
Sbjct: 254 MTNRGIKPNTVT-----------------------------------YNTLIDAYGKARK 278

Query: 412 VEKMGELFLTM-KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
             +M  + + M  +R+C PD  T  + ++A+  +G  E  +    K     +N+G
Sbjct: 279 FSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKF----QNAG 329



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 108/303 (35%), Gaps = 84/303 (27%)

Query: 99  KIFGLLRQQQ---WYQARCQTFTKLMVMLGKCKQP---EQASLLFEVMLSDGLKPSVDVY 152
           K F LL + +     Q   QT++   ++L  C Q    ++   L   M + G+KP+   Y
Sbjct: 210 KAFSLLEEMKNTPGCQPDVQTYS---ILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTY 266

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT------------------------- 187
             L+ AYG++    E  S + +M +   C+PDV+T                         
Sbjct: 267 NTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQ 326

Query: 188 ----------YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                     ++IL+ S  K   +  +  ++  M       + VT+N +ID +GKA   +
Sbjct: 327 NAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLK 386

Query: 238 EMESSFSAM----------------------------------VESGGCHPDIFTLNSMI 263
           +ME  F  M                                  VE+     D    N ++
Sbjct: 387 QMEYLFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLV 446

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AY   G + +M+         G K DI T   + K+Y   GM    + +      R   
Sbjct: 447 DAYARLGCLAEMKGVLEMMKQNGCKPDIVTYRTMIKTYTYKGMDSHAKEL------RELL 500

Query: 324 PTV 326
           PTV
Sbjct: 501 PTV 503


>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
          Length = 492

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/410 (45%), Positives = 270/410 (65%), Gaps = 1/410 (0%)

Query: 39  QELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLAL 98
           +E+  +  + K LS ILR E     ++K+   K  + L P  VLEAL + +   +W  AL
Sbjct: 66  EEVNRKIASRKALSVILRREATKAVLDKRKPGKGTRRLLPGTVLEALHDRVAALRWDSAL 125

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           K+F L+R Q WY+     + KL+ MLGKCKQPE+A  LF+ M+ +G  P++  YTALVS 
Sbjct: 126 KVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVST 185

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y +SG   EAF  ++ MK    C+PDV TYSILIKSC   + F+ ++ +LA+M+  GI  
Sbjct: 186 YSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPP 245

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + VTYNT+ID YGKA +F EMES+   M+ S  C PD++T+NS + A+G+SG IE ME  
Sbjct: 246 NTVTYNTLIDAYGKAGRFAEMESTLLKML-SQNCKPDVWTMNSTLRAFGSSGQIETMESC 304

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +F   G+  +I+T NIL  SYG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+
Sbjct: 305 YEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGR 364

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG +E+ME  F+ MK   +KPN +T CS+V AY +AG + K+ + LR +ENSD+ LD  F
Sbjct: 365 AGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVF 424

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           FNC++ AYG+ G + +M ++   MKE  C PD +T  TMI+ +   G+ +
Sbjct: 425 FNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWFLIKGIDD 474



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 37/307 (12%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  +++ A  +   ++     Q   QT++ L+         E+   L   M   G+ P+ 
Sbjct: 188 RSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPPNT 247

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT---------------------- 187
             Y  L+ AYG++G   E  ST+  M S  +CKPDV+T                      
Sbjct: 248 VTYNTLIDAYGKAGRFAEMESTLLKMLS-QNCKPDVWTMNSTLRAFGSSGQIETMESCYE 306

Query: 188 -------------YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                        Y+IL+ S  K   ++ +  ++  M       + VTYN +ID +G+A 
Sbjct: 307 KFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 366

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             E+ME  F  M +S    P+  TL S++ AYG +G ++K++          +  DI   
Sbjct: 367 DLEQMEYIFRLM-KSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVFF 425

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  +YGR G   +M  ++D M++    P  VT   +I+ F   G  +   +Y + +K 
Sbjct: 426 NCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWFLIKGIDDHRVQYLRDLKD 485

Query: 355 RGMKPNS 361
              K ++
Sbjct: 486 GRAKDDT 492



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)

Query: 307 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           +D    V + M+ + ++ P +  Y  +I   GK    EK  + F+ M   G  PN  +Y 
Sbjct: 121 WDSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYT 180

Query: 366 SLVSAYSKAGLIM------------------------------------KVDSILRQVEN 389
           +LVS YS++G                                       KV S+L  +  
Sbjct: 181 ALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMAR 240

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           + +  +T  +N +I AYG+AG   +M    L M  ++C PD  T  + ++A+ + G  E 
Sbjct: 241 AGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIET 300

Query: 450 AQNLENKMIA 459
            ++   K  A
Sbjct: 301 MESCYEKFQA 310


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/410 (45%), Positives = 273/410 (66%), Gaps = 1/410 (0%)

Query: 39  QELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLAL 98
           +E+  +  + K LS ILR +     ++K+   K  + L P+ VLEAL E I   +W+ AL
Sbjct: 76  EEVNRKIASRKALSIILRRDATKAVLDKREPGKGTRRLLPRTVLEALHERIAALRWESAL 135

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           K+F L+R Q WY+     + KL+ MLGKCKQP +A  LF+ M+ +G  P+++ YTALVSA
Sbjct: 136 KVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSA 195

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y +SG  D AFS ++ MK+   C+PDV TYSILIKSC   + FD ++ +LA+M+  GI  
Sbjct: 196 YSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRP 255

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + VTYNT++D YGKA +F EMES+   M+ S  C PD++T+NS + A+G+SG IE ME  
Sbjct: 256 NTVTYNTLVDAYGKAGRFAEMESTLLEML-SEKCKPDVWTMNSTLRAFGSSGQIEMMESC 314

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +F   G+  +I+T NIL  SYG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+
Sbjct: 315 YEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGR 374

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG +E+ME  F+ MK   +KPN +T CSL+ AY +A  + K++++LR +ENSD  LD  F
Sbjct: 375 AGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVF 434

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           FNC++ AYG+ G + +M ++   MK     PD +T  TMI+ +   G+ +
Sbjct: 435 FNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLVKGIDD 484



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 116 TFTKLMVMLGKCKQ-PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  L+   GK  +  E  S L E MLS+  KP V    + + A+G SG + E   +  +
Sbjct: 259 TYNTLVDAYGKAGRFAEMESTLLE-MLSEKCKPDVWTMNSTLRAFGSSGQI-EMMESCYE 316

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               S   P++ TY+IL+ S  K   ++ +  ++  M       + VTYN +ID +G+A 
Sbjct: 317 KFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 376

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             E+ME  F  M +S    P+  TL S+I AYG +  ++K+E             DI   
Sbjct: 377 DLEQMEYIFRLM-KSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVFF 435

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           N L  +YGR G   +M  V++ M+     P  VT   +I+ F   G  +   ++ + +K
Sbjct: 436 NCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLVKGIDDHRVQHLRDLK 494



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 101/260 (38%), Gaps = 78/260 (30%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           F+L+   +    Y+GI      Y  +I   GK K+  +    F AMV+ G C P++ +  
Sbjct: 138 FELMRDQVWYRPYVGI------YIKLITMLGKCKQPGKAHELFQAMVDEG-CAPNLESYT 190

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           +++SA                                   Y R+G +D+  S++D M+  
Sbjct: 191 ALVSA-----------------------------------YSRSGSFDRAFSLLDRMKAT 215

Query: 321 -FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P V TY+I+I++   A   +K+++    M   G++PN++TY               
Sbjct: 216 PGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTY--------------- 260

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
                               N ++ AYG+AG   +M    L M    C PD  T  + ++
Sbjct: 261 --------------------NTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLR 300

Query: 440 AYNALGMTEAAQNLENKMIA 459
           A+ + G  E  ++   K  A
Sbjct: 301 AFGSSGQIEMMESCYEKFQA 320


>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
 gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/409 (46%), Positives = 269/409 (65%), Gaps = 13/409 (3%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           ++K +S ILR E     IEKK      K L P+ VLEAL E I   +W  AL++F LLR+
Sbjct: 73  SQKAISVILRREATKAVIEKKRGPTNSKKLLPQTVLEALHERITALRWASALEVFELLRE 132

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q WY+     + KL+VMLGKCKQP++A  LF+ M+ +G   + + YTAL+SAYG+SGL D
Sbjct: 133 QLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFD 192

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +AFS + +MK+  DC+PDV+TYSILIKSC +   FD ++ +L++M  LGI  + VT    
Sbjct: 193 KAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVT---- 248

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
                    F EME++   M+    C PD++T+NS I A+G SG +E ME  Y +F   G
Sbjct: 249 ---------FAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAG 299

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ +I+T NIL  SYG+AG Y KM +VM++MQ+  +  T+VTYN+VI+ FG+AG +++ME
Sbjct: 300 IEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQME 359

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ M+   +KP+ +T CSLV AY +AG   K+ S+LR +ENSDV LDT FFNC++ AY
Sbjct: 360 YLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAY 419

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
           G+     +M E+   M+E+ C PD +T+ TMI+AY+  GMT  A+ L N
Sbjct: 420 GRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRN 468


>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
 gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/360 (49%), Positives = 253/360 (70%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L+  +F LLR+Q WY+     + KL+VMLGKCKQP++A  LF+ M+ +G   + + YTAL
Sbjct: 12  LSRLVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTAL 71

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           +SAYG+SGL D+AFS + +MK+  DC+PDV+TYSILIKSC +   FD ++ +L++M  LG
Sbjct: 72  LSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLG 131

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           I  + VTYNT+ID YGKAK F EME++   M+    C PD++T+NS I A+G SG +E M
Sbjct: 132 IRPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMM 191

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           E  Y +F   G++ +I+T NIL  SYG+AG Y KM +VM++MQ+  +  T+VTYN+VI+ 
Sbjct: 192 ENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDA 251

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           FG+AG +++ME  F+ M+   +KP+ +T CSLV AY +AG   K+ S+LR +ENSDV LD
Sbjct: 252 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLD 311

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
           T FFNC++ AYG+     +M E+   M+E+ C PD +T+ TMI+AY+  GMT  A+ L N
Sbjct: 312 TVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRN 371


>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g48730, chloroplastic; Flags: Precursor
 gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/407 (45%), Positives = 268/407 (65%), Gaps = 3/407 (0%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           + K +S ILR E     IEKK  SKK   L P+ VLE+L E I   +W+ A+++F LLR+
Sbjct: 86  SRKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLRE 142

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q WY+     + KL+VMLGKCKQPE+A  LF+ M+++G   + +VYTALVSAY +SG  D
Sbjct: 143 QLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFD 202

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+ +  MKS  +C+PDV+TYSILIKS  +   FD ++ +L++M   GI  + +TYNT+
Sbjct: 203 AAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTL 262

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ID YGKAK F EMES+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G
Sbjct: 263 IDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSG 322

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ +I+T NIL  SYG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME
Sbjct: 323 IEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQME 382

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ M+   + P+ +T CSLV AY +A    K+  +LR +ENSD+ LD  FFNC++ AY
Sbjct: 383 YLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAY 442

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G+     +M  +   M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 443 GRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489


>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic [Vitis vinifera]
          Length = 498

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 262/402 (65%), Gaps = 3/402 (0%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKNI+KK+  K     W   V EAL + + +K+W  AL++F +LR+Q +YQ +  T+ KL
Sbjct: 91  IKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKL 150

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LGK  QP +A  LF+ M+ +G +P+ ++YTAL+++Y +S L+DEAFS +N MK++  
Sbjct: 151 LVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPR 210

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDV+TYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA KF+EME
Sbjct: 211 CQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEME 270

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M+ES    PD++T+N+++S +GN G IE MEKWY +F   G++ + +T NIL  +
Sbjct: 271 KVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+  GMK +
Sbjct: 331 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKAD 390

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +F 
Sbjct: 391 TKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFN 450

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE---NKMIA 459
            MK++HC PD+ T++ M++AY   GM +   +LE    +M+A
Sbjct: 451 RMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMVA 492


>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/400 (42%), Positives = 260/400 (65%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKNI+KK+  K     W   V EAL + + +K+W  AL++F +LR+Q +YQ +  T+ KL
Sbjct: 91  IKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKL 150

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LGK  QP +A  LF+ M+ +G +P+ ++YTAL+++Y +S L+DEAFS +N MK++  
Sbjct: 151 LVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPR 210

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDV+TYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA KF+EME
Sbjct: 211 CQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEME 270

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M+ES    PD++T+N+++S +GN G IE MEKWY +F   G++ + +T NIL  +
Sbjct: 271 KVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+  GMK +
Sbjct: 331 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKAD 390

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +F 
Sbjct: 391 TKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFN 450

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            MK++HC PD+ T++ M++AY   GM +   +LE +   M
Sbjct: 451 RMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490


>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
 gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
          Length = 560

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/388 (42%), Positives = 251/388 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           +KN++K++ ++     W   V EAL + +  K WQ AL++F +L++Q +Y  +  TF KL
Sbjct: 153 LKNVKKRLDARAEAKAWACTVTEALADRVTSKNWQEALQVFEMLKEQPFYHPKEGTFMKL 212

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LG+  QP +A  LF+ ML  G +P+  +YTAL+ AY +SGLLD+A   +NDMK    
Sbjct: 213 IVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLLDDALQLLNDMKGSPL 272

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS +IK+C    RFDLI+ +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 273 CQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPNTVTQNIVLSGYGKAGRLDDME 332

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M++S  C PD++T+N ++S +GN G +E MEKWY +F   G++ + +TLNIL  +
Sbjct: 333 KVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELMEKWYEKFRSYGIEPETRTLNILIGA 392

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM++M+K  F  T  TYN VIE F +AG  + ME  F +M+  GMKP+
Sbjct: 393 YGKKRMYDKMSAVMEYMRKLAFPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPD 452

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L++ +SKAG   KV  +++  E  DV  +T F N I+ A  +A D+ +M  +F 
Sbjct: 453 TKTFCCLINGFSKAGQFHKVVGMVKLAERLDVPANTSFHNAILGACARADDLMEMERVFR 512

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTE 448
            MK   C PD +T++ +++AY   GMT+
Sbjct: 513 HMKHTQCDPDAVTYSILVEAYRKEGMTD 540


>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
 gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/407 (41%), Positives = 263/407 (64%), Gaps = 2/407 (0%)

Query: 50  DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW 109
           D S+  RT  AIKNI+KK+  K     W   V EAL + + +K+W  A+++F +L++Q +
Sbjct: 25  DASRPRRT--AIKNIKKKLDRKSKAKAWVNTVAEALTDCVLKKQWLQAIQVFEMLKEQPF 82

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           YQ +  T+ KL+V+LG+C QP++A  LF+ M+ +G++P+ ++YTAL++AY ++ L+DE F
Sbjct: 83  YQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAYCRNNLIDEGF 142

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           S IN MKS+  C+PDVYTYS L+K+C    RF+LI+ +  EM    I  + VT N ++ G
Sbjct: 143 SIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDERLISPNTVTQNVVLSG 202

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           YG+   +++ME   S M+ES  C PD++T+N ++S +GN G I+ ME+WY +F   G++ 
Sbjct: 203 YGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLMERWYEKFRNFGIEP 262

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           + +T NIL  +YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F
Sbjct: 263 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAF 322

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M+   MK ++ T+C L++ Y+ AGL  KV S ++     ++  +T FFN +ISA  +A
Sbjct: 323 DQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTSFFNAVISACAKA 382

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
            D+ +M  +F  MK++ C PD+ T++ M++AY   GM +    LE +
Sbjct: 383 DDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMNDKIYYLEQE 429


>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2750; Flags: Precursor
 gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
 gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
 gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
 gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 486

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 176/444 (39%), Positives = 275/444 (61%), Gaps = 9/444 (2%)

Query: 28  IQAIKRSPGPIQELGIQKEAE--KDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEAL 85
           + A K SPG + +  + K+ E       + +    IKN++KK+  +   N W   V E L
Sbjct: 36  LAASKSSPGSVTKKRLWKDGEFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETL 95

Query: 86  DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
            + I +K+W  AL++F +LR+Q +YQ +  T+ KL+V+LGK  QP +A  LF+ ML +GL
Sbjct: 96  SDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGL 155

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P+V++YTAL++AY +S L+D+AFS ++ MKS   C+PDV+TYS L+K+C    +FDL++
Sbjct: 156 EPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVD 215

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +  EM    I  + VT N ++ GYG+  +F++ME   S M+ S  C PD++T+N ++S 
Sbjct: 216 SLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSV 275

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +GN G I+ ME WY +F   G++ + +T NIL  SYG+  MYDKM SVM++M+K  F  T
Sbjct: 276 FGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWT 335

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TYN +IE F   G  + ME  F +M+  GMK ++ T+C L++ Y+ AGL  KV S ++
Sbjct: 336 TSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ 395

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
                ++  +T F+N +ISA  +A D+ +M  +++ MKER CV D+ TF  M++AY   G
Sbjct: 396 LAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEG 455

Query: 446 MTE-------AAQNLENKMIAMKE 462
           M +         Q L ++ +A KE
Sbjct: 456 MNDKIYYLEQERQKLMDRTVATKE 479


>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
 gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
 gi|224028857|gb|ACN33504.1| unknown [Zea mays]
 gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
          Length = 571

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/388 (41%), Positives = 250/388 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           +KN++K++ ++     W   V EAL + +  K WQ AL++F +L++Q +Y  +  T+ KL
Sbjct: 164 LKNVKKRLDARADAKAWACTVTEALADRVSSKNWQEALQVFEMLKEQPFYHPKEGTYMKL 223

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LG+  QP +A  LF+ ML  G +P+ ++YTAL+ AY +SGLLDEA   +NDMKS   
Sbjct: 224 IVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPL 283

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS +IK+C    RFDL + +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 284 CQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDME 343

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M++S  C PD++T+N ++S +GN G +E ME+WY +F   GV+ + +TLNIL  +
Sbjct: 344 RVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 403

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM+ M+K  F  T  TYN VIE F +AG    ME  F +M+  GM+P+
Sbjct: 404 YGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPD 463

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  +S+AG   KV  +++  E  DV ++TPF N ++ A  +A D+ +M  +F 
Sbjct: 464 TKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADDLVEMERVFR 523

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTE 448
            MK   C PD  T++ +++AY   GMT+
Sbjct: 524 RMKHTQCEPDASTYSILVEAYRKEGMTD 551


>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
          Length = 580

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 162/388 (41%), Positives = 249/388 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           +KN++K++ ++     W   V EAL + +  K WQ AL++F +L++Q +Y  +  T+ KL
Sbjct: 173 LKNVKKRLDARADAKAWACTVTEALADRVSSKNWQEALQVFEMLKEQPFYHPKEGTYMKL 232

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LG+  QP +A  LF+ ML  G +P+ ++YTAL+ AY +SGLLDEA   +NDMKS   
Sbjct: 233 IVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPL 292

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS +IK+C    RFDL + +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 293 CQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDME 352

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M++S  C PD++T+N ++S +GN G +E ME+WY +F   GV+ + +TLNIL  +
Sbjct: 353 RVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 412

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM+ M+K  F  T  TYN VIE F +AG    ME  F +M+  GM+P+
Sbjct: 413 YGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPD 472

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  +S+AG   KV  +++  E  DV  +TPF N ++ A  +A D+ +M  +F 
Sbjct: 473 TKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPANTPFHNAVLGACARADDLVEMERVFR 532

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTE 448
            MK   C PD  T++ +++AY   GMT+
Sbjct: 533 RMKHTQCEPDASTYSILVEAYRKEGMTD 560


>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
 gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/399 (41%), Positives = 259/399 (64%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           R    +K ++KK+  K     W   V EAL + I  K+W  AL++F +LR+Q +Y+ +  
Sbjct: 84  RRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEG 143

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ KL+V+LG+  QP +A LLF+ M+ +  +P+ ++YTAL++AY ++ L+D+AFST+N M
Sbjct: 144 TYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLM 203

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K++  C+PDVYTYSILIK+C    RF+++E +  EM+   I  + VT N ++ GYGK  K
Sbjct: 204 KTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 263

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +++ME     M+ES  C PD++T+N ++S +GN G+IE ME+WY +F   G++ + +T N
Sbjct: 264 YDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFN 323

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL  +YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F++M+  
Sbjct: 324 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAE 383

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM+ ++ T+C L++ Y+ AGL  KV   ++     ++  +T F+N +ISA  +A D+ +M
Sbjct: 384 GMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEM 443

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
             +F  MK++HC PDN T++ M++AY   GM +    LE
Sbjct: 444 DRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLE 482


>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 512

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/396 (41%), Positives = 255/396 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKNI K+  ++     W   V EAL + I  K W  AL++F +L++Q +Y  +  T+ KL
Sbjct: 105 IKNIRKRQDARSDAKAWAPTVTEALSDRIAAKNWPEALQVFEMLKEQPFYYPKEGTYMKL 164

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +++LG+  QP  A  LF  M   G +P+ ++YTAL++AY +SGLLD+A   + DMK+   
Sbjct: 165 LLLLGRSGQPALAHRLFADMQQQGCQPTPELYTALIAAYCRSGLLDDALRLLGDMKAAPL 224

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS LIK+     RFDL++ +  EM+  G+  + VT N ++ GYG+A + ++ME
Sbjct: 225 CQPDVYTYSTLIKALVDASRFDLVDAMYKEMAERGVAPNTVTQNIVLSGYGRAGRMDDME 284

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              SAM++S    PD++T+N ++S +GNSG ++ MEKWY +F   G++ + +TLNIL  +
Sbjct: 285 KLLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLMEKWYEKFRGYGIEPETRTLNILIGA 344

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM+FM+K  F  T  TYN VIE F +AG  + ME+ F +M+  GMKP+
Sbjct: 345 YGKKRMYDKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPD 404

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L++ +SKAGL  KV  +++  E  DV  +T F N +++A  +AGD+ +M  +F 
Sbjct: 405 TKTFCCLINGFSKAGLFHKVVGMVKLAERLDVPANTSFHNSVLAACARAGDLVEMERVFR 464

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
            MK   C PD  T++ +++AY   GMT+   +L+ +
Sbjct: 465 HMKHVQCAPDATTYSILVEAYRKEGMTDKVYDLQQE 500


>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
 gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
          Length = 486

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 176/446 (39%), Positives = 275/446 (61%), Gaps = 13/446 (2%)

Query: 28  IQAIKRSPGPIQELGIQKEAE----KDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLE 83
           + A K SPG + +  + K+ E     +     RT   IKN++KK+  +   N W   V E
Sbjct: 36  LAASKSSPGSVTKKRLWKDGEFPGITEPVNPRRT--PIKNVKKKLDRRSKANGWANTVTE 93

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
            L + I +K+W  AL++F +LR+Q +YQ +  T+ KL+V+LGK  QP +A  LF+ ML +
Sbjct: 94  TLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEE 153

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL+P+V++YTAL++AY +S L+D+AFS ++ MK +  C+PDV+TYS L+K+C    +FDL
Sbjct: 154 GLEPTVELYTALLAAYTRSNLIDDAFSILDTMKGLPQCQPDVFTYSTLLKACVDASQFDL 213

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           ++ +  EM    I  + VT N ++ GYG+  +F++ME   S M+ S  C PD++T+N ++
Sbjct: 214 VDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIIL 273

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S +GN G I+ ME WY +F   G++ + +T NIL  SYG+  MYDKM SVM++M+K  F 
Sbjct: 274 SVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFP 333

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            T  TYN +IE F   G  + ME  F +M+  GMK ++ T+C L++ Y+ AGL  KV S 
Sbjct: 334 WTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISS 393

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           ++     ++  +T F+N +I+A  +A D+ +M  ++  MKER CV D+ TF  M++AY  
Sbjct: 394 VQLAAKFEIPENTAFYNAVIAACAKADDLIEMERVYTRMKERQCVCDSRTFEIMVEAYEK 453

Query: 444 LGMTE-------AAQNLENKMIAMKE 462
            GM +         Q L ++ +A KE
Sbjct: 454 EGMNDKIYYLEQERQKLMDRAVATKE 479


>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
 gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
          Length = 562

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 163/400 (40%), Positives = 253/400 (63%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           +KN++K++ ++     W   V EAL + +  K WQ AL++F +L++Q +Y  +  T+ KL
Sbjct: 155 LKNVKKRLDARADAKAWACTVTEALADRVSSKNWQEALQVFEMLKEQPFYHPKEGTYMKL 214

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LG+  QP +A  LF+ ML  G +P+ ++YTAL+ AY +S LLDEA   +NDMKS   
Sbjct: 215 IVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDEALQLLNDMKSSPL 274

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS +IK+C    RFDL + +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 275 CQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDME 334

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M++S  C PD++T+N ++S +GN G +E ME+WY +F   GV+ + +TLNIL  +
Sbjct: 335 RVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 394

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM+ M+K  F  T  TYN VIE F +AG    ME  F +M+  GM+P+
Sbjct: 395 YGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPD 454

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  +S+AG   KV  +++  E  DV ++TPF N ++ A  +A D+ +M  +F 
Sbjct: 455 TKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADDLVEMERVFR 514

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            MK   C PD  T++ +++AY   GMT+    L  +  A+
Sbjct: 515 RMKHTQCEPDASTYSILVEAYRKEGMTDKIYALHQENPAL 554


>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 166/400 (41%), Positives = 257/400 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKN++KK+  K     W   V EAL E I +K+W  AL+   +LR+Q +YQ R  T+ KL
Sbjct: 85  IKNVKKKLDRKNNAKAWANTVTEALSECIDKKQWLQALETLDMLREQSFYQPREGTYMKL 144

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LGK  QP++A  LF  M+ +G  P+ ++YTAL++AY +S ++DEA S +++MK+   
Sbjct: 145 IVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYCRSNMIDEALSILDEMKNHPL 204

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDV+TYS LIK+C    +F+LIE +  EM+   I  + VT N +++GYGKA  F++ME
Sbjct: 205 CQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGKAGMFDQME 264

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M++S  C PD++T+N++I  +GN G I+ MEKWY +F   G++ + +T NIL  S
Sbjct: 265 KVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGS 324

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F +AG  + ME  F +M+  GM+ +
Sbjct: 325 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRAD 384

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  ++ AGL  KV S ++     ++ L+T F+N ++SA  +A D+ +M  +F+
Sbjct: 385 TKTFCCLIKGFANAGLFHKVISSVQLAAKLEIPLNTAFYNAVLSACAKAEDLMEMDRVFM 444

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            MK+  C  D+ T++ M++AY   GM +    LE +   M
Sbjct: 445 RMKDTQCPLDDTTYSIMVEAYRKEGMNDKIYYLEQEKQTM 484


>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
          Length = 588

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 160/388 (41%), Positives = 253/388 (65%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKN++K++ ++     W   V EAL + I  K WQ AL++F +L++Q +Y  +  TF KL
Sbjct: 94  IKNVKKRLDARAEAKAWACTVTEALADRIDAKNWQEALQVFQMLKEQPFYHPKEGTFMKL 153

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +++LG+  QP +A  LF+ ML  G +P+ ++YTAL++AY ++GLLD+AF  + DMK+   
Sbjct: 154 LLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPV 213

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS +IK+C    RFD+++ +  +M+   I  + VT N ++ GYG+A + ++ME
Sbjct: 214 CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDME 273

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              SAM++S    PD++T+N ++S +GN G IE MEKWY +F   G++ + +TLNIL  +
Sbjct: 274 KVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGA 333

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM++M+K  F  T  T+N VIE F  AG  + ME  F +M+  GMKP+
Sbjct: 334 YGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPD 393

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L++ +  AGL  KV  +++  E   V +DT F N ++ A  +A D+ +M  +F+
Sbjct: 394 TKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFHNAVLMACVKAEDLMEMERVFM 453

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTE 448
            MK+  CVPD  T++ ++ AY   GMT+
Sbjct: 454 RMKQIQCVPDATTYSILVGAYRKEGMTD 481



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 36/266 (13%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G + +   Y  +I  Y +    ++     + M  S  C PD++T +++I A 
Sbjct: 169 LFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKAC 228

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPT 325
            ++   + ++  Y +     +  +  T NI+   YGRAG  D M  V+  M       P 
Sbjct: 229 VDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPD 288

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V T NI++  FG  G IE ME++++K +  G++P + T                      
Sbjct: 289 VWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRT---------------------- 326

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
                         N +I AYG+    +KM  +   M++        TF  +I+A+   G
Sbjct: 327 -------------LNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAG 373

Query: 446 MTEAAQNLENKMIAMKENSGKKLIQC 471
             +  ++  N+M A       K   C
Sbjct: 374 DAKNMEHTFNQMRAEGMKPDTKTFCC 399


>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 498

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/407 (43%), Positives = 259/407 (63%), Gaps = 16/407 (3%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           + K +S ILR E   + IEKK  SKK   L P+ VLE+L E I   +W+ AL++F LLR+
Sbjct: 89  SRKAISIILRREATKEIIEKKKGSKK---LLPRTVLESLHERITALRWESALQVFELLRE 145

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q WY+     + KL+VMLGKCKQPE+A  LF+ M+++G   + +VYTAL+SAY +SG  D
Sbjct: 146 QLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSRSGRFD 205

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+ +  MKS  +C+PDV+TYSILIKS  +   FD +  +L++M  LGI  + +T    
Sbjct: 206 AAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTIT---- 261

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
                    F EMES+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G
Sbjct: 262 ---------FVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSG 312

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ +I+T NIL  SYG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME
Sbjct: 313 IEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQME 372

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ M+   + P+ +T CSLV AY +AG   K+  +LR +ENSD+ LD  FFNC++ AY
Sbjct: 373 YLFRLMQSERIIPSCVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAY 432

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G+     +M  +   M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 433 GRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 479


>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/400 (42%), Positives = 257/400 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKNI+KK+  K     W   V EAL + I +K+W  AL++F +L++Q +Y  +  T+ KL
Sbjct: 77  IKNIKKKLDRKNKAKAWVNTVTEALSDRILKKQWFQALEVFEMLKEQPFYHPKEGTYMKL 136

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LG+  QP++A  LF+ M+ +G++P+ ++YTAL++AY ++ L DEAFS +  MK++  
Sbjct: 137 LVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQMKTLPR 196

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C PDVYTYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA  +++ME
Sbjct: 197 CLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLSGYGKAGMYDQME 256

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M+ES  C PD++T+N ++S +GN G I+ MEKWY +F   G++ + +T NIL  +
Sbjct: 257 RVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILIGA 316

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM SVM+FM+K  F  T  TYN VIE F  AG ++ ME  F +M+  GMK +
Sbjct: 317 YGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMKAD 376

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L++ Y+ AGL  KV S ++     ++  +T F+N IISA  +A D+ +M  +F 
Sbjct: 377 TKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAEDLMEMERVFK 436

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            MK+  C PD+ T++ M++AY   GM +    LE +   M
Sbjct: 437 RMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLEQEKQGM 476


>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
 gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 501

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 158/388 (40%), Positives = 252/388 (64%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKN++K++ ++     W   V EAL + I  K WQ AL++F +L++Q +Y  +  TF KL
Sbjct: 94  IKNVKKRLDARAEAKAWACTVTEALADRIDAKNWQEALQVFQMLKEQPFYHPKEGTFMKL 153

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +++LG+  QP +A  LF+ ML  G +P+ ++YTAL++AY ++GLLD+AF  + DMK+   
Sbjct: 154 LLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPV 213

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDVYTYS +IK+C    RFD+++ +  +M+   I  + VT N ++ GYG+A + ++ME
Sbjct: 214 CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDME 273

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              SAM++S    PD++T+N ++S +GN G IE MEKWY +F   G++ + +TLNIL  +
Sbjct: 274 KVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGA 333

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM +VM++M+K  F  T  T+N VIE F  AG  + ME  F +M+  GMKP+
Sbjct: 334 YGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPD 393

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L++ +  AGL  KV  +++  E   V +DT F N ++    +A D+ +M  +F+
Sbjct: 394 TKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFM 453

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTE 448
            MK+  C+PD  T++ ++ AY   GMT+
Sbjct: 454 RMKQIQCIPDATTYSILVGAYRKEGMTD 481



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 36/266 (13%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G + +   Y  +I  Y +    ++     + M  S  C PD++T +++I A 
Sbjct: 169 LFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKAC 228

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPT 325
            ++   + ++  Y +     +  +  T NI+   YGRAG  D M  V+  M       P 
Sbjct: 229 VDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPD 288

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V T NI++  FG  G IE ME++++K +  G++P + T                      
Sbjct: 289 VWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRT---------------------- 326

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
                         N +I AYG+    +KM  +   M++        TF  +I+A+   G
Sbjct: 327 -------------LNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAG 373

Query: 446 MTEAAQNLENKMIAMKENSGKKLIQC 471
             +  ++  N+M A       K   C
Sbjct: 374 DAKNMEHTFNQMRAEGMKPDTKTFCC 399


>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
          Length = 495

 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 176/407 (43%), Positives = 257/407 (63%), Gaps = 16/407 (3%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           + K +S ILR E     IEKK  SKK   L P+ VLE+L E I   +W+ A+++F LLR+
Sbjct: 86  SRKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLRE 142

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q WY+     + KL+VMLGKCKQPE+A  LF+ M+++G   + +VYTALVSAY +SG  D
Sbjct: 143 QLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFD 202

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+ +  MKS  +C+PDV+TYSILIKS  +   FD ++ +L++M   GI  + +T    
Sbjct: 203 AAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTIT---- 258

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
                    F EMES+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G
Sbjct: 259 ---------FVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSG 309

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ +I+T NIL  SYG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME
Sbjct: 310 IEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQME 369

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ M+   + P+ +T CSLV AY +A    K+  +LR +ENSD+ LD  FFNC++ AY
Sbjct: 370 YLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAY 429

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G+     +M  +   M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 430 GRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 476


>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/390 (42%), Positives = 247/390 (63%)

Query: 77  WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           W   V E+L E I  K W  AL++F +LR+Q +YQ +  T+ KL+V+LGK  QP +A  L
Sbjct: 89  WVNTVTESLSERIHNKHWLQALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQL 148

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  M+ +GL+P+ ++YTAL++AY +S ++DEAFS +N+MK +  C+PDV+TYS LIK C 
Sbjct: 149 FTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCV 208

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
              +FDL+E +  EM+   I  + VT N ++ GYGKA  F++ME   S+M+ S  C PD+
Sbjct: 209 DAFKFDLVELLYEEMAERSIMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDV 268

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T+N++IS +GN G I+ MEKWY +F   G++ + +T NIL  +YG+  MYDKM SVM++
Sbjct: 269 WTMNTIISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEY 328

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+K  F  T  TYN VIE F  AG  + ME  F +M+  GMK ++ T C L++ Y+ AGL
Sbjct: 329 MRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGL 388

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             KV S +R     ++  +  F+N ++SA  +A D+ +M  +F  MK+  C PD+ T+  
Sbjct: 389 FHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTI 448

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENSGK 466
           MI+AY   GM +    LE +   M  +  K
Sbjct: 449 MIEAYRKEGMNDKIYYLEQEKQTMMTDDKK 478


>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 255/409 (62%)

Query: 40  ELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALK 99
           E     E++    +  R    IKN++K++ ++     W   V EAL + I  K WQ AL+
Sbjct: 99  EFPAAGESQSQSGRRGRARTPIKNVQKRLDARADAKAWACTVTEALADRIAAKNWQGALQ 158

Query: 100 IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           +F +L++Q +Y  +  T+ KL+++LG+  QP  A  LF  M   G +P+ ++YTAL+ AY
Sbjct: 159 VFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAY 218

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
            ++GLLDEA   + DMK+   C+PDVYTYSILIK+     RFDL++ +  EM+   +  +
Sbjct: 219 CRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPN 278

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            VT N ++ GY +A + ++ME   SAM+ES    PD++T+N ++S +GNSG +E MEKWY
Sbjct: 279 TVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWY 338

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            +F   G++ + +T NIL  +YG+  MYDKM +VM++M++  F  T  TYN VIE F +A
Sbjct: 339 EKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEA 398

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  + ME+ F +M+  GMKP++ T+C L++ +S A L  KV  +++  E  DV  +T F 
Sbjct: 399 GDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFH 458

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           N +++A  +A D+ +M  +F  MK   C PD IT++ +++AY   GMT+
Sbjct: 459 NSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILLEAYRKEGMTD 507



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 39/280 (13%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P   TY  L+    +  +  L + +  EM   G + +   Y  +I  Y +    +E    
Sbjct: 171 PKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKL 230

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M  +  C PD++T + +I A+ ++   + ++  Y E     V  +  T NI+   Y 
Sbjct: 231 LQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYC 290

Query: 303 RAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           RAG  D M  ++  M +     P V T NI++  FG +G +E ME++++K +  G++P +
Sbjct: 291 RAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPET 350

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            T                                   FN +I AYG+    +KM  +   
Sbjct: 351 RT-----------------------------------FNILIGAYGKKRMYDKMSAVMEY 375

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           M+         T+  +I+A+   G    A+N+E+    M+
Sbjct: 376 MRRLAFPWTTATYNNVIEAFAEAG---DAKNMEDTFNQMR 412


>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/427 (41%), Positives = 265/427 (62%), Gaps = 5/427 (1%)

Query: 38  IQELGIQKEAEKDLSKI-LRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQL 96
           +QE G ++ A +    + +R E + +  E++  +K  K L+P+ +LE+LD  IKQ +W+ 
Sbjct: 43  LQEAGSKRRAARTADTVVMRIERSNEATERRALAKGSKRLYPRALLESLDVRIKQNEWES 102

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F L+R Q+WY A   T+ KL+ ML + KQP+ AS LF+ +L D L+P+++++TAL+
Sbjct: 103 ALRVFELVRIQEWYTAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALI 162

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + + +S LL +AF     M+    C PD Y Y+ +IK C     +D  +K+  EM   G+
Sbjct: 163 TVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGV 222

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + VTYNT+I GYGKA  F E+E   S M E+ G  PD  T N++I  +G    I +ME
Sbjct: 223 EPTIVTYNTLIFGYGKAGLFAEIEYLLSLM-EANGITPDTITWNTLIRVFGLHNRIPEME 281

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIET 335
           + Y      G+ AD  TLN L  +YGRAG+Y KM  V DFM +R+ +P T VTYNI+IE 
Sbjct: 282 QAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFM-RRYSYPMTTVTYNIIIEI 340

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +GKA  IE+M+  FK+MK +G+KPN IT+ S++SAY K G   K++ I+RQV + +   D
Sbjct: 341 YGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIEKIMRQVRHYNAA-D 399

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
           T  +N  I A+ +A D E M +LF  MK     PD IT+ T+I+AY  +   + A+ L+ 
Sbjct: 400 TAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIEAYGRVRKLQKARELQE 459

Query: 456 KMIAMKE 462
           +  A+K+
Sbjct: 460 EWDALKK 466


>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/390 (42%), Positives = 246/390 (63%)

Query: 77  WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           W   V E+L E I  K W  AL++F +LR+Q +YQ +  T  KL+V+LGK  QP +A  L
Sbjct: 89  WVNTVTESLSERIHNKHWLQALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQL 148

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  M+ +GL+P+ ++YTAL++AY +S ++DEAFS +N+MK +  C+PDV+TYS LIK C 
Sbjct: 149 FTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCV 208

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
              +FDL++ +  EM+   I  + VT N ++ GYGKA  F++ME   S+M++S  C PD+
Sbjct: 209 DAFKFDLVQLLYEEMAERSITPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDV 268

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T+N++IS +GN G I+  EKWY +F   G++ + +T NIL  +YG+  MYDKM SVM++
Sbjct: 269 WTMNTIISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEY 328

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+K  F  T  TYN VIE F  AG  + ME  F +M+  GMK ++ T C L++ Y+ AGL
Sbjct: 329 MRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGL 388

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             KV S +R     ++  +  F+N ++SA  +A D+ +M  +F  MK+  C PD+ T+  
Sbjct: 389 FHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTI 448

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENSGK 466
           MI+AY   GM +    LE +   M  +  K
Sbjct: 449 MIEAYRKEGMNDKIYYLEQEKQTMMTDDKK 478


>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
          Length = 469

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 164/402 (40%), Positives = 246/402 (61%), Gaps = 32/402 (7%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           IKNI+KK+  K     W   V EAL + + +K+W  AL++F +LR+Q +YQ +  T+ KL
Sbjct: 91  IKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKL 150

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +V+LGK  QP +A  LF+ M+ +G +P+ ++YTAL+++Y +S L+DEAFS +N MK++  
Sbjct: 151 LVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPR 210

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PDV+TYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA KF+EME
Sbjct: 211 CQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEME 270

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              S M+ES    PD++T+N+++S +GN G IE MEKWY +F   G++ + +T NIL  +
Sbjct: 271 KVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+  GMK +
Sbjct: 331 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKAD 390

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T+C L+  Y+ AGL  K                             A D+ +M  +F 
Sbjct: 391 TKTFCCLIRGYANAGLFHK-----------------------------AEDLIEMERVFN 421

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE---NKMIA 459
            MK++HC PD+ T++ M++AY   GM +   +LE    +M+A
Sbjct: 422 RMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMVA 463


>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
          Length = 443

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 239/371 (64%), Gaps = 3/371 (0%)

Query: 78  PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF 137
           P+P L A      +++   + ++F +L++Q +Y  +  TF KL+++LG+  QP +A  LF
Sbjct: 56  PRPSLIASTPKTGKRR---SSQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLF 112

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
           + ML  G +P+ ++YTAL++AY ++GLLD+AF  + DMK+   C+PDVYTYS +IK+C  
Sbjct: 113 DEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVD 172

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             RFD+++ +  +M+   I  + VT N ++ GYG+A + ++ME   SAM++S    PD++
Sbjct: 173 ASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVW 232

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T+N ++S +GN G IE MEKWY +F   G++ + +TLNIL  +YG+  MYDKM +VM++M
Sbjct: 233 TMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYM 292

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +K  F  T  T+N VIE F  AG  + ME  F +M+  GMKP++ T+C L++ +  AGL 
Sbjct: 293 RKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLF 352

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            KV  +++  E   V +DT F N ++    +A D+ +M  +F+ MK+  C+PD  T++ +
Sbjct: 353 HKVVGMVKLAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFMRMKQIQCIPDATTYSIL 412

Query: 438 IQAYNALGMTE 448
           + AY   GMT+
Sbjct: 413 VGAYRKEGMTD 423



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 39/256 (15%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G + +   Y  +I  Y +    ++     + M  S  C PD++T +++I A 
Sbjct: 111 LFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKAC 170

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPT 325
            ++   + ++  Y +     +  +  T NI+   YGRAG  D M  V+  M       P 
Sbjct: 171 VDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPD 230

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V T NI++  FG  G IE ME++++K +  G++P + T                      
Sbjct: 231 VWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRT---------------------- 268

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
                         N +I AYG+    +KM  +   M++        TF  +I+A+   G
Sbjct: 269 -------------LNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAG 315

Query: 446 MTEAAQNLENKMIAMK 461
               A+N+E+    M+
Sbjct: 316 ---DAKNMEHTFNQMR 328


>gi|242057231|ref|XP_002457761.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
 gi|241929736|gb|EES02881.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
          Length = 267

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 149/276 (53%), Positives = 196/276 (71%), Gaps = 12/276 (4%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYK--NLWPKPVLEALDEAIKQKKWQLALKIF 101
           + E    L+ ILRTE A+  + +K ++ + +  NLWP+ VLEALD  +   +W+ AL+IF
Sbjct: 2   EHEQPDALAHILRTEAAVSGVSRKAAAARQQSTNLWPRVVLEALDSTVAACRWESALEIF 61

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
            LLR+Q WY+ R QT+ +L++MLGKC+QP  A+ LF+ MLS+ L+P+ DVYTALV AYG 
Sbjct: 62  ELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAYGY 121

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           SG LDEA + +  MK  +DCKPD YT+S          RFDLI  +L EMSYLGIEC++V
Sbjct: 122 SGFLDEALAAVEQMKGAADCKPDGYTFSS--------RRFDLIPAVLDEMSYLGIECNSV 173

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            +N IIDGYGKA  FEEME + SAM+ESG   PDI+T+NS+I AYGN G  ++MEK Y+E
Sbjct: 174 IHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSYSE 233

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           F LMGV+ D +T NI  KSYG+AGMYDKM S+   +
Sbjct: 234 FQLMGVEPDTKTFNI--KSYGKAGMYDKMMSIFSLV 267



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 11/199 (5%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  ++   GK ++     + F AM+ S    P      +++ AYG SG +++      +
Sbjct: 76  TYARLLMMLGKCRQPGPAAALFKAML-SERLRPTADVYTALVGAYGYSGFLDEALAAVEQ 134

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              M   AD +  +  T S  R   +D + +V+D M         V +N +I+ +GKA  
Sbjct: 135 ---MKGAADCKP-DGYTFSSRR---FDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAM 187

Query: 342 IEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            E+ME     M   G   P+  T  S++ AY   G   +++    + +   V  DT  FN
Sbjct: 188 FEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFN 247

Query: 401 CIISAYGQAGDVEKMGELF 419
             I +YG+AG  +KM  +F
Sbjct: 248 --IKSYGKAGMYDKMMSIF 264



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 30/166 (18%)

Query: 313 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           + + ++K+ ++ P   TY  ++   GK          FK M    ++P +  Y +LV AY
Sbjct: 60  IFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAY 119

Query: 372 SKAGLIMKVDSILRQVENS------------------DVILD----------TPFFNCII 403
             +G + +  + + Q++ +                    +LD          +   N II
Sbjct: 120 GYSGFLDEALAAVEQMKGAADCKPDGYTFSSRRFDLIPAVLDEMSYLGIECNSVIHNAII 179

Query: 404 SAYGQAGDVEKM-GELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
             YG+A   E+M G L   ++    VPD  T  ++I AY   G T+
Sbjct: 180 DGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTD 225



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYG 407
             +M + G++ NS+ + +++  Y KA +  +++  L   +E+   + D    N +I AYG
Sbjct: 160 LDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYG 219

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
             G  ++M + +   +     PD  TF   I++Y   GM
Sbjct: 220 NHGRTDEMEKSYSEFQLMGVEPDTKTFN--IKSYGKAGM 256


>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
 gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
          Length = 458

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 238/387 (61%), Gaps = 2/387 (0%)

Query: 66  KKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           +K  ++K   L P  +L+ L + I++ +W+ ALK+F LLR QQWYQ    T+ +L+ MLG
Sbjct: 9   RKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRLLEMLG 68

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           KCK+P++A+ LF+ ML+DG  PS + +TAL+SAY +S L+  A   +  M +   C PDV
Sbjct: 69  KCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDV 128

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +TYS+LIKSC    +      +LA+M+  GI+ + VTYN I+D Y K+   +++      
Sbjct: 129 FTYSLLIKSCCDCGQLSRASDLLADMTARGIQPNRVTYNIILDAYAKSGSLDKLHDLALQ 188

Query: 246 MVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           M++  S  C PD ++ N+++  +GN G+I +ME+W+          D  TL+ L  +Y +
Sbjct: 189 MLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAAYAK 248

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           A M+DKM +V+ ++ +  +    VTYNI+I  +G+AG   +M + F  MK  G++P+S+T
Sbjct: 249 AEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVT 308

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           YC+L++ Y K G+  K+  +L Q+    V  DT  +N ++ AY +A D+  +   F  M+
Sbjct: 309 YCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFAAMQ 368

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAA 450
           E+ C PD++T+  +IQAY + G+T+ A
Sbjct: 369 EQGCKPDHLTYNILIQAYRSQGLTDKA 395


>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
 gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
          Length = 458

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 237/387 (61%), Gaps = 2/387 (0%)

Query: 66  KKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           +K  ++K   L P  +L+ L + I++ +W+ ALK+F LLR QQWYQ    T+ +++ MLG
Sbjct: 9   RKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRMLEMLG 68

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           KCK+P++A+ LF+ ML+DG  PS + +TAL+SAY +S L+  A   +  M +   C PDV
Sbjct: 69  KCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDV 128

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +TYS+LIKSC    +      +LA+M+  GI+ + VTYN I+D Y K    +++      
Sbjct: 129 FTYSLLIKSCCDCGQLSRAADLLADMTARGIQPNRVTYNIILDAYAKCGSLDKLHDLALQ 188

Query: 246 MVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           M++  S  C PD ++ N+++  +GN G+I +ME+W+          D  TL+ L  +Y +
Sbjct: 189 MLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAAYAK 248

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           A M+DKM +V+ ++ +  +    VTYNI+I  +G+AG   +M + F  MK  G++P+S+T
Sbjct: 249 AEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVT 308

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           YC+L++ Y K G+  K+  +L Q+    V  DT  +N ++ AY +A D+  +   F  M+
Sbjct: 309 YCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFAAMQ 368

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAA 450
           E+ C PD++T+  +IQAY + G+T+ A
Sbjct: 369 EQGCKPDHLTYNILIQAYRSQGLTDKA 395


>gi|224099036|ref|XP_002311357.1| predicted protein [Populus trichocarpa]
 gi|222851177|gb|EEE88724.1| predicted protein [Populus trichocarpa]
          Length = 369

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 235/363 (64%), Gaps = 3/363 (0%)

Query: 100 IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           +F +L++Q +YQ +  T+ KL+V+LG+C QP++A  +F+ M+ +G++P+ + YTAL++AY
Sbjct: 1   MFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAY 60

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
            ++ L++E FS IN MK+V  C+PDVYTYS L+K+C    RF+LI+ +  EM    I  +
Sbjct: 61  CRNNLIEEGFSIINQMKTVPRCQPDVYTYSTLLKACVDASRFELIDILYQEMDERLISPN 120

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            VT N ++ G+GK   +++ME   S M+ES  C PD++T+N ++S +GN G+++ ME+WY
Sbjct: 121 TVTQNIVLSGFGKVGMYDQMERVLSGMLESKTCKPDVWTMNIILSVFGNKGHVDLMERWY 180

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            +F   G++ + +T NIL  +YG+  MYD M SVM++M+K  F  T  TYN VIE F   
Sbjct: 181 EKFRNFGIEPETRTFNILIGAYGKKRMYDNMSSVMEYMRKLQFPWTTSTYNNVIEAFADV 240

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  + ME  F +M+   MK ++ T+C L++ Y+ AGL  KV S ++     ++  +T  +
Sbjct: 241 GDAKNMEYTFDQMRAEDMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTSLY 300

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE---NK 456
             +ISA  +A D+ +M  +F  MK++ C+PD+ T++ M++AY   GM +    LE    K
Sbjct: 301 KAVISACAKADDLVEMERVFKQMKDKQCLPDSRTYSIMVEAYRKEGMNDKIYYLEQEKQK 360

Query: 457 MIA 459
           MIA
Sbjct: 361 MIA 363


>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 485

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 236/390 (60%), Gaps = 1/390 (0%)

Query: 77  WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           W   + E L   I ++ W +AL++F +LR+Q +YQ R  T+ KL+V+LGK  QP +A  L
Sbjct: 91  WVHSLPEVLSYRIHKRHWSIALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHEL 150

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  +  DG   S ++YTAL++A+ Q+ L+DEA S +++M ++  C+PD++TYS LIK+  
Sbjct: 151 FNSIHEDGCG-STELYTALIAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALV 209

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
              +F+++E +  +M+   I  +  T N I+ GYGKA +F++ME   S+M+E   C PD+
Sbjct: 210 DSLKFEMVELLFDKMAKRSIVPNTYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDV 269

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T+N++IS +G+ G I+ MEKWY++F   G++    T NIL  +YG   MYDKM SVM  
Sbjct: 270 WTMNTVISVFGDKGQIDIMEKWYDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQC 329

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++     T  TYN VIE F   G  E ME  F +M   G+K ++ T+C L++ Y+ AG+
Sbjct: 330 MRRVKCPWTTSTYNNVIEAFAAVGDAENMERAFDQMYAEGLKADTKTFCFLINGYANAGI 389

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             KV S +   E   + ++T F+N IISA  +   + +M   F  MKE+ C PDN T++ 
Sbjct: 390 FHKVISSVSLAEKLQIRVNTSFYNAIISACAKDDALTEMERFFKHMKEKECHPDNTTYSV 449

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENSGK 466
           MI+AY   GM +    LE +   M  +  K
Sbjct: 450 MIEAYRKEGMNDKIHYLEQEKRMMMSDDKK 479


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 221/374 (59%), Gaps = 8/374 (2%)

Query: 89  IKQKKWQLAL------KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           +K + W  A+      ++F L+R Q+WY A   T+ KL+ ML K KQ  +AS +F+ +L 
Sbjct: 3   LKPRPWGTAVNGVALWQVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLE 62

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           D L+P+  ++TAL++ + QS    +A      M+    C PD YTY+ +IK C +   + 
Sbjct: 63  DKLRPTTAIFTALLTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYV 122

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              KI  EM   G++ S VTYN +I GYGKA  F E+E   S M E+    PD  T N++
Sbjct: 123 QARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTM-EANNVAPDTVTWNTL 181

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  +G +  I +ME+ Y      G++ D+ TLN L  +YG AG+++KM SV  +MQ+  +
Sbjct: 182 IRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNY 241

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
             T +TYNI++E +G+AG +++MEE +K+MK   +KPNS T+CS++SAY + G    V+ 
Sbjct: 242 PMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEK 301

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++RQ    D   DT  +N  I A+ +A + E M ++F  MK +   PD++T++ +I AY 
Sbjct: 302 VMRQARYFDAA-DTAVYNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILIGAYE 360

Query: 443 ALGMTEAAQNLENK 456
            +   + A++L+ +
Sbjct: 361 RIRRVDKARDLQEE 374



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 30/236 (12%)

Query: 62  KNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGL--------------LRQQ 107
           + +E+ +S+ +  N+ P  V            W   +++FGL              LRQ 
Sbjct: 157 REVERVLSTMEANNVAPDTV-----------TWNTLIRVFGLNCKIPEMEQAYEGLLRQG 205

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
              Q    T   L+   G     E+   + + M       +   Y  ++ AYG++G++D+
Sbjct: 206 --LQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQ 263

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
              T   MK+    KP+  T+  ++ +  +   +  +EK++ +  Y     +AV YN  I
Sbjct: 264 MEETWKRMKA-EFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAADTAV-YNAAI 321

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           D + +A+ FE+ME  F  M +  G  PD  T + +I AY     ++K      E+N
Sbjct: 322 DAFQRAQNFEDMEKIFEEM-KLKGHAPDDVTYSILIGAYERIRRVDKARDLQEEWN 376


>gi|388521199|gb|AFK48661.1| unknown [Lotus japonicus]
          Length = 266

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 155/246 (63%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M+   I  + VT N ++ GYGKA KF++ME   S+M+ES  C PD++T+N+ IS +GN G
Sbjct: 1   MAARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTTISVFGNMG 60

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            I+ MEKWY +F   G++ + +T NIL  +YG+  MYDKM +VM++M+K  F  T  TYN
Sbjct: 61  QIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSTVMEYMRKLQFPWTTSTYN 120

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VIE F   G  + ME  F +M+  GMK +S T+C L++ ++ AGL  KV S ++  E  
Sbjct: 121 NVIEAFTDVGDAKTMEYAFDQMRAEGMKADSKTFCCLINGFANAGLFHKVISTVQLAEKF 180

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           ++ ++T F+N ++SA  +A D+ +M  +F  MK+  C PD+ T+  MI+AY   GM +  
Sbjct: 181 EIAVNTTFYNAVLSACTKAEDLMEMERVFKRMKDNQCPPDDTTYTIMIEAYRKEGMNDKI 240

Query: 451 QNLENK 456
             LE +
Sbjct: 241 YYLEQE 246



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 118/242 (48%), Gaps = 3/242 (1%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M +  + P+      ++S YG++G  D+    ++ M   + CKPDV+T +  I       
Sbjct: 1   MAARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTTISVFGNMG 60

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFT 258
           + D++EK   +    GIE    T+N +I  YGK + +++M +    M +     P    T
Sbjct: 61  QIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSTVMEYMRKLQ--FPWTTST 118

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N++I A+ + G+ + ME  +++    G+KAD +T   L   +  AG++ K+ S +   +
Sbjct: 119 YNNVIEAFTDVGDAKTMEYAFDQMRAEGMKADSKTFCCLINGFANAGLFHKVISTVQLAE 178

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           K         YN V+    KA  + +ME  FK+MK     P+  TY  ++ AY K G+  
Sbjct: 179 KFEIAVNTTFYNAVLSACTKAEDLMEMERVFKRMKDNQCPPDDTTYTIMIEAYRKEGMND 238

Query: 379 KV 380
           K+
Sbjct: 239 KI 240



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAG 375
           M  R   P  VT NIV+  +GKAG  ++ME+    M +    KP+  T  + +S +   G
Sbjct: 1   MAARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTTISVFGNMG 60

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I  ++    +  N  +  +T  FN +I AYG+    +KM  +   M++        T+ 
Sbjct: 61  QIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSTVMEYMRKLQFPWTTSTYN 120

Query: 436 TMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
            +I+A+  +G  +  +   ++M A    +  K   C
Sbjct: 121 NVIEAFTDVGDAKTMEYAFDQMRAEGMKADSKTFCC 156


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 195/377 (51%), Gaps = 2/377 (0%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
           ++E + E  +Q+KW+ A+ I+  + Q   ++     F  LM   G+ KQ  +A   F +M
Sbjct: 68  LMETVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLM 127

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
                 P+   +  L++AY + G L+ A   +++MK  S+C P + TY+  ++   K   
Sbjct: 128 KKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKE-SNCSPGLVTYNTYLEVLNKSGS 186

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           + L E +  EM   G+  +  T+  +I+ YGKA    + E  F +M     C P +FT  
Sbjct: 187 WQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSM-RKALCPPSLFTYT 245

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I+A+   GN  + E+ + E   +G   DI T N L ++Y R G     + V + M + 
Sbjct: 246 ALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEA 305

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                 V+YNI+I+ FG+AG I   +  +  MK  G KP   ++  L+SA+ KAG +   
Sbjct: 306 GVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDA 365

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ++ +R++E+  V  DT  FN ++ AYG +G ++KM  L+ +M+   C PD IT  T+I  
Sbjct: 366 ENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINV 425

Query: 441 YNALGMTEAAQNLENKM 457
           Y   G  E A+ + N +
Sbjct: 426 YAQGGYIERAEEIFNSL 442



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 174/342 (50%), Gaps = 6/342 (1%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           LE L+   K   WQLA  +F  + Q +       TFT ++ + GK     +A  LF+ M 
Sbjct: 178 LEVLN---KSGSWQLAEDVFREM-QNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMR 233

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
                PS+  YTAL++A+ + G    A     +++SV    PD+YTY+ L+++ ++    
Sbjct: 234 KALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFV-PDIYTYNALLEAYSRGGHP 292

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
              +++   M   G++   V+YN +ID +G+A    + ++ + +M +  G  P + +   
Sbjct: 293 AGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSM-KKVGFKPTMKSHIL 351

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++SA+  +G +   E +      MGV+ D    N L  +YG +G  DKM S+ + MQ   
Sbjct: 352 LLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSV 411

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P ++T N +I  + + G+IE+ EE F  ++ +G  P+ +++ SL+ AYSK  L  K  
Sbjct: 412 CKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCV 471

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           S+ +++  +  I D      ++S+      V+++ ++  T +
Sbjct: 472 SVYQKMLIAGCIPDRATAKVLLSSCRGPEQVKEVTDMIETQR 513



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 124/279 (44%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           KPDV  +++L+ +  +  ++   E     M       +  ++N ++  Y +  + E  E 
Sbjct: 98  KPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAER 157

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
               M ES  C P + T N+ +     SG+ +  E  + E    GV   + T  ++   Y
Sbjct: 158 VLHEMKESN-CSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIY 216

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+A    K   +   M+K    P++ TY  +I    + G+  + EE F +++  G  P+ 
Sbjct: 217 GKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDI 276

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY +L+ AYS+ G       +   +  + V  D   +N +I A+G+AG +     ++ +
Sbjct: 277 YTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDS 336

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           MK+    P   +   ++ A+   G    A+N   ++ +M
Sbjct: 337 MKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESM 375


>gi|357457969|ref|XP_003599265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488313|gb|AES69516.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 185

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 125/192 (65%), Gaps = 38/192 (19%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           ML +GLKP+VDV+ AL SAY              DMKSV+D K DVY YS+LI  C KF 
Sbjct: 1   MLFEGLKPTVDVFIALASAY--------------DMKSVADRKSDVYKYSVLISCCAKFR 46

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           RFDLIE++LA+MSYLGIEC+ VTYN+IIDGYGKA  FE+ME+S + M+E+  C PD+FTL
Sbjct: 47  RFDLIERVLADMSYLGIECNNVTYNSIIDGYGKADMFEKMENSLTDMIENENCQPDVFTL 106

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS+I +YGN                 G K D   +N         GMYDK+++V DFM++
Sbjct: 107 NSLIGSYGN-----------------GRKIDNDMINF-------TGMYDKIKTVTDFMER 142

Query: 320 RFFFPTVVTYNI 331
           RFF PT+VTY I
Sbjct: 143 RFFAPTIVTYEI 154



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           A  YD M+SV D          V  Y+++I    K    + +E     M + G++ N++T
Sbjct: 17  ASAYD-MKSVADRKSD------VYKYSVLISCCAKFRRFDLIERVLADMSYLGIECNNVT 69

Query: 364 YCSLVSAYSKAGLIMKV-DSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           Y S++  Y KA +  K+ +S+   +EN +   D    N +I +YG    ++ 
Sbjct: 70  YNSIIDGYGKADMFEKMENSLTDMIENENCQPDVFTLNSLIGSYGNGRKIDN 121


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 186/370 (50%), Gaps = 6/370 (1%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
           +L AL +A + ++ QL   +F  L+  +W      +++ L+  LG+  + E A  +   M
Sbjct: 15  LLNALAKAGQCEEAQL---LFEELKAAKW-TPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            + G KP++  Y  LV   G++G  DEA   + +M+  + C PDV TY+ LI +  K  R
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRD-NGCVPDVRTYNCLISTLGKAGR 129

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                 + AEM   G      TYN++I G GK  + ++       M E  GC PD+ T +
Sbjct: 130 LSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM-ERHGCPPDVMTYS 188

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+I+  G  G   K  K + E    G K D  T   L  + G+AG  D    ++D M++R
Sbjct: 189 SLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKER 248

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VVTYN +I  FGK G + +      +MK  G KP+ +TY  L++   KA  + + 
Sbjct: 249 GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEA 308

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L+++E      DT  +N +I+  G+AG +   G LF  MK + C PD +T++T+I A
Sbjct: 309 CQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITA 368

Query: 441 YNALGMTEAA 450
                  E+A
Sbjct: 369 LGKAARVESA 378



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 180/368 (48%), Gaps = 3/368 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  KW+ AL++   + Q +  +    T+  L+  LGK  Q ++A  L   M  +G  P V
Sbjct: 56  RAGKWEAALEVVAEM-QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDV 114

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+S  G++G L EAF+   +M+    C PD +TY+ LI    K  R     ++L 
Sbjct: 115 RTYNCLISTLGKAGRLSEAFTLFAEMRE-RGCVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G     +TY+++I G GK  +  +    F  M   G   PD  T  +++ A G +
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR-KPDSITFTALMDALGKA 232

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G ++   +  +E    GVK  + T N L   +G+ G   +  +++D M++    P VVTY
Sbjct: 233 GRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           + +I    KA  +++  +  KKM+  G  P++ITY +L++   KAGL+     +  ++++
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKS 352

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                D   ++ +I+A G+A  VE    LF  M+     PD  T+ ++I      G  + 
Sbjct: 353 KGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDD 412

Query: 450 AQNLENKM 457
           A  L ++M
Sbjct: 413 ADRLFSEM 420



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 161/323 (49%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  LGK  + ++A  L E M   G  P V  Y++L++  G+ G   +AF    +M
Sbjct: 151 TYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEM 210

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     KPD  T++ L+ +  K  R D   ++L EM   G++   VTYN +I G+GK   
Sbjct: 211 KRRGR-KPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD 269

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  +    M +  GC PD+ T + +I+    +  +++  +   +    G   D  T N
Sbjct: 270 LVEAYNLLDEM-KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYN 328

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L    G+AG+ +    + D M+ +   P VVTY+ +I   GKA  +E     F++M+  
Sbjct: 329 TLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV 388

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+  TYCS+++   KAG +   D +  ++    +  D   +N  +++ G+ G  ++ 
Sbjct: 389 GIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEA 448

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++F  MKE   +PD  T+  ++
Sbjct: 449 RKIFEDMKESGLLPDVATYDALL 471



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 164/309 (53%), Gaps = 3/309 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y +L++A  ++G  +EA     ++K+ +   PDV +YS LI S  +  +++   +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKA-AKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++AEM   G + +  TYNT++D  GKA +F+E     + M ++ GC PD+ T N +IS  
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN-GCVPDVRTYNCLISTL 124

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G +G + +    + E    G   D  T N L    G+ G   K   +++ M++    P V
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDV 184

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TY+ +I   GK G   K  + F++MK RG KP+SIT+ +L+ A  KAG +     +L +
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALG 445
           ++   V      +N +I+ +G+ GD+ +   L   MK   C PD +T++ +I     A  
Sbjct: 245 MKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ 304

Query: 446 MTEAAQNLE 454
           + EA Q L+
Sbjct: 305 LDEACQVLK 313



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 180/376 (47%), Gaps = 35/376 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT LM  LGK  + + A  L + M   G+KP V  Y AL++ +G+ G L EA++ +++M
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-- 233
           K  + CKPDV TYS LI    K  + D   ++L +M   G     +TYNT+I+G GKA  
Sbjct: 281 KR-NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGL 339

Query: 234 -----KKFEEMES--------SFSAMV-------------------ESGGCHPDIFTLNS 261
                + F+ M+S        ++S ++                   ES G  PD+FT  S
Sbjct: 340 LNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCS 399

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+  G +G ++  ++ ++E    G+  D+ T N    S GR G + + R + + M++  
Sbjct: 400 IITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESG 459

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P V TY+ ++    K   ++      K++  +G   +S+ +   +   +  G + +  
Sbjct: 460 LLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAH 519

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L+   +  +      +N +I A  +AG V +       +KE+   PD ++++++I A 
Sbjct: 520 ELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISAL 579

Query: 442 NALGMTEAAQNLENKM 457
              G  + A  L  +M
Sbjct: 580 GQTGQIDTAFELLEEM 595



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 165/340 (48%), Gaps = 6/340 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  LGK  +  +A  LF+ M   G KP    +TAL+ A G++G +D+A   +++M
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKA 233
           K     KP V TY+ LI    K    DL+E   +L EM   G +   VTY+ +I G  KA
Sbjct: 246 KE-RGVKPGVVTYNALIAGFGKVG--DLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKA 302

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + +E       M E  GC PD  T N++I+  G +G +    + ++     G   D+ T
Sbjct: 303 SQLDEACQVLKKM-EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVT 361

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + L  + G+A   +    + + M+     P + TY  +I   GKAG ++  +  F +M+
Sbjct: 362 YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMR 421

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G+ P+ ITY + +++  + G   +   I   ++ S ++ D   ++ ++    +  +V+
Sbjct: 422 GKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVD 481

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               L   + E+ C  D++ F   ++   + G  + A  L
Sbjct: 482 DACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHEL 521



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 100/205 (48%)

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P++ T NS+++A   +G  E+ +  + E        D+ + + L  S GRAG ++    
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V+  MQ +   P + TYN +++  GKAG  ++      +M+  G  P+  TY  L+S   
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           KAG + +  ++  ++     + DT  +N +I   G+ G  +K  EL   M+   C PD +
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 433 TFATMIQAYNALGMTEAAQNLENKM 457
           T++++I      G T  A  L  +M
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEM 210



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 35/174 (20%)

Query: 319 KRFFFPTVVTYN-----------------------------------IVIETFGKAGHIE 343
           K F  P VVTYN                                    +I + G+AG  E
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
              E   +M+ +G KPN  TY +LV    KAG   +   +L ++ ++  + D   +NC+I
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           S  G+AG + +   LF  M+ER CVPD  T+ ++I     +G ++ A  L  +M
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM 175



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 88/208 (42%), Gaps = 37/208 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ +LGK  Q + A  LF  M   GL P V  Y A +++ G+ G   EA     DM
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDM 455

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFD--------LIEKILAEMSYLGIEC--------- 218
           K  S   PDV TY  L+   +K    D        LIE+  A  S    EC         
Sbjct: 456 KE-SGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGN 514

Query: 219 ------------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                              A +YN +ID   KA +  E  ++   + E GG  PDI + +
Sbjct: 515 VDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG-KPDIVSYS 573

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           S+ISA G +G I+   +   E +  G+K
Sbjct: 574 SLISALGQTGQIDTAFELLEEMSKRGLK 601


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 192/381 (50%), Gaps = 11/381 (2%)

Query: 71  KKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP 130
           K  K L P  +   L E  +Q  W+  L++F   ++Q WY    + +T+L+  LG+  + 
Sbjct: 3   KHPKPLSPFDITCVLTELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRV 62

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS--DCKPDVYTY 188
             A+LLF+ ML +  +     YTALV+AYG++ + +EA +  + MK  +  +C+P+  T 
Sbjct: 63  HNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTC 122

Query: 189 SILIKSCTKFHRFDLIEKILAEMS------YLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           + LI +  K   +D   ++  +M         G E + +TYN +ID   K    +     
Sbjct: 123 NALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKV 182

Query: 243 FSAMVESG---GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              M +        P+  T N++I+A G  G  EK E+  +     GV+ D  T   L  
Sbjct: 183 LQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALID 242

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           +YG+AG+++   +    M+       V+ Y  +I+ +G+ G  +K EE FK M+H G++P
Sbjct: 243 AYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRP 302

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N +TY SL+ AY KAGL  +  ++   +  S    +   ++ +I AYG+AG+  +   + 
Sbjct: 303 NQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARML 362

Query: 420 LTMKERHCVPDNITFATMIQA 440
             M+   C P+ IT++ ++ +
Sbjct: 363 DMMRRAGCQPNLITYSAILSS 383



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 159/312 (50%), Gaps = 16/312 (5%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM----- 140
           K K ++ AL +F  +++    +  CQ    T   L+  L K    +QA  +F  M     
Sbjct: 93  KAKMFEEALAVFSHMKESN--EPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTN 150

Query: 141 -LSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            L  G +P+V  Y  L+ A  + GLLD   +    + D  +    +P+  TY+ LI +C 
Sbjct: 151 GLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACG 210

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K   ++  E+++  M   G++   +TY  +ID YGKA  +E  E++F  M +      D+
Sbjct: 211 KGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGM-KGTNVSVDV 269

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
               +MI AYG  G  +K E+ +      G++ +  T   L ++YG+AG+ ++ R+V + 
Sbjct: 270 MAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNI 329

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++  +   V+ Y+ +I+ +GKAG+  +       M+  G +PN ITY +++S+  K+  
Sbjct: 330 MRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNC 389

Query: 377 IMKVDSILRQVE 388
            ++   +LR+++
Sbjct: 390 WVEAQVLLRRLQ 401



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   ++  +Q A ++F ++ Q    +    T+  LM   GK   PE++  +F +M   G
Sbjct: 276 IDAYGREGLYQKAEEMFKMM-QHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESG 334

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            + +V +Y++L+ AYG++G   EA   + DM   + C+P++ TYS ++ SC K + +   
Sbjct: 335 YEGNVLIYSSLIDAYGKAGNYLEAARML-DMMRRAGCQPNLITYSAILSSCCKSNCWVEA 393

Query: 205 EKILAEMSYLG 215
           + +L  +   G
Sbjct: 394 QVLLRRLQVFG 404


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 187/364 (51%), Gaps = 3/364 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F  L++   Y+ +      ++ +LG+  +   A  +FE M   G+ PSV  YTAL+
Sbjct: 13  ALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALL 72

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-FHRFDLIEKILAEMSYLG 215
           S Y + GLL EA++    MK    C P+V TY+ LI +CTK  +R   +  +  EM   G
Sbjct: 73  SGYAKQGLLKEAWALFEAMKE-KGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAG 131

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           ++ + +TYN +++       F+        M ++  C P++ +  +MI++ G SG +++ 
Sbjct: 132 VQPNDITYNCMVNACVCLSLFDTASQILKEM-KAVNCLPNVISYTTMINSLGRSGRLDEA 190

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + + E   +G   +  T N L K+Y R G Y+K   +   M+     P + TYN VI+ 
Sbjct: 191 VELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDM 250

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            G+ G   + E  F +M+ +G  P+ +TY +++ AYSK     +   +L+ ++ +    D
Sbjct: 251 CGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPD 310

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +N ++ A G+AG   +  ++F  +K     P+ ++F+ +I  Y  LG  E A+    
Sbjct: 311 LWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWV 370

Query: 456 KMIA 459
           +M A
Sbjct: 371 EMRA 374



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 138/275 (50%), Gaps = 2/275 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LFE M   G++P+   Y  +V+A     L D A   + +MK+V +C P+V +Y+ +I S 
Sbjct: 123 LFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAV-NCLPNVISYTTMINSL 181

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  R D   ++  EM  LG   ++ TYN+++  Y +  ++E+    F  M E  GC PD
Sbjct: 182 GRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGM-EDEGCIPD 240

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           ++T N++I   G  G   + E  + E    G   D  T N +  +Y +     + R ++ 
Sbjct: 241 LYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLK 300

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M++    P + TYNI+++  GKAG   +  + F ++K  G  PN +++ +L++ Y + G
Sbjct: 301 TMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLG 360

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
              + +    ++  +  + +   +  ++++Y   G
Sbjct: 361 YFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHG 395



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 92/227 (40%), Gaps = 37/227 (16%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T ++  LG+  + ++A  LFE M   G  P+   Y +L+ AY + G  ++A      M
Sbjct: 173 SYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGM 232

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C PD+YTY+ +I  C +   F   E +  EM   G     VTYNT++D Y K  +
Sbjct: 233 ED-EGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSR 291

Query: 236 FEEMESSFSAMVESGGCHPDIFTLN----------------------------------- 260
                     M +  GC PD++T N                                   
Sbjct: 292 RGRARDLLKTM-KRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFS 350

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           ++I+ YG  G  E+ E+ + E    G   +      L  SY   GMY
Sbjct: 351 ALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMY 397



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I   G+ G +    E F+ M   G+ P+   Y +L+S Y+K GL+ +  ++   ++   
Sbjct: 36  IISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKG 95

Query: 392 VILDTPFFNCIISAYG-QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +   +N +I+A   +A  +  +  LF  MK+    P++IT+  M+ A   L + + A
Sbjct: 96  CSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTA 155

Query: 451 QNLENKMIAM 460
             +  +M A+
Sbjct: 156 SQILKEMKAV 165


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           + Q+ WQ AL+++  L  + WY    +    ++ +LGK  Q   A  +F       +  +
Sbjct: 190 VGQQNWQRALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIF-ARAESSVGDT 248

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEK 206
           V VY A++  Y ++G   +    ++ M+    C PD+ +++ LI +  K    +  L  +
Sbjct: 249 VQVYNAMMGVYARNGRFSKVKELLDLMRE-RGCVPDLVSFNTLINARMKSGAMEPNLALQ 307

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L E+   GI    +TYNT+I    +    EE  + FS M ES  C PD++T N+MIS Y
Sbjct: 308 LLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDM-ESHRCQPDLWTYNAMISVY 366

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G      K E+ + E    G   D  T N L  ++ R G  +K+R + + M KR F    
Sbjct: 367 GRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDE 426

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TYN +I  +GK G  ++  + ++ MK  G  P+++TY  L+ +  KA  + +  +++ +
Sbjct: 427 MTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSE 486

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + ++ V      ++ +I AY +AG  E+  E F  M+     PD + ++ M+  +     
Sbjct: 487 MLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNE 546

Query: 447 TEAAQNLENKMI 458
            + A  L ++MI
Sbjct: 547 MKKAMGLYHEMI 558



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 38/386 (9%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  + G LRQ+     R + +  L+         E+A  +F  M+ DG  P+V
Sbjct: 786  KLKIWQKAESLVGSLRQRCSKMDR-KVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTV 844

Query: 150  DVYTALVSA-----------------------------------YGQSGLLDEAFSTIND 174
            D    L+ A                                   + Q+G L E     N 
Sbjct: 845  DSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNG 904

Query: 175  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            MK+     P ++ Y I+++   K  R   +E +L EM   G +      N+I+  Y   +
Sbjct: 905  MKAAGYF-PTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIE 963

Query: 235  KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             F+ M   +   ++     PD  T N++I  Y      E+     N+   +G++  + T 
Sbjct: 964  DFKSMGIIYQK-IQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTY 1022

Query: 295  NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
              L  ++ +  MY++   + + ++   +      Y+++++T+  +G   K E     MK 
Sbjct: 1023 RSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKE 1082

Query: 355  RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             G++P   T   L+ +Y K+G   + +++L+ +  + V+LDT  ++ +I AY + GD + 
Sbjct: 1083 SGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKA 1142

Query: 415  MGELFLTMKERHCVPDNITFATMIQA 440
              E    MKE    PD+  +   I+A
Sbjct: 1143 GIEKLTEMKEAGIEPDHRIWTCFIRA 1168



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 3/293 (1%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           LAL++   +R+    +    T+  L+    +    E+A  +F  M S   +P +  Y A+
Sbjct: 304 LALQLLNEVRRSG-IRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAM 362

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           +S YG+     +A     +++S     PD  TY+ L+ + ++    + +  I  EM   G
Sbjct: 363 ISVYGRCARARKAEELFKELES-KGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRG 421

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
                +TYNTII  YGK  + ++    +  M +S G +PD  T   +I + G +  +E+ 
Sbjct: 422 FGQDEMTYNTIIHMYGKQGRHDQAMQIYRDM-KSSGRNPDAVTYTVLIDSLGKASKVEEA 480

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
               +E    GVK  + T + L  +Y +AG  ++     + M++    P  + Y+++++ 
Sbjct: 481 ANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDF 540

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           F +   ++K    + +M   G  P++  Y  ++ A  +  +   VD I+R +E
Sbjct: 541 FLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDME 593



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 143/329 (43%), Gaps = 2/329 (0%)

Query: 125  GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
            GK K  ++A  L   +     K    V+ AL+ AY  SG  + A +  N M       P 
Sbjct: 785  GKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR-DGPSPT 843

Query: 185  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
            V + + L+++     R + +  ++ E+  +G++ S  +    ++ + +A    E++  ++
Sbjct: 844  VDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYN 903

Query: 245  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             M ++ G  P +     M+        +  +E    E    G + D+Q  N + K Y   
Sbjct: 904  GM-KAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGI 962

Query: 305  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
              +  M  +   +Q     P   TYN +I  + +    E+      KM+  G++P   TY
Sbjct: 963  EDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTY 1022

Query: 365  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             SL++A++K  +  + + +  ++ ++   LD  F++ ++  Y  +GD  K   L   MKE
Sbjct: 1023 RSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKE 1082

Query: 425  RHCVPDNITFATMIQAYNALGMTEAAQNL 453
                P   T   ++ +Y   G  E A+N+
Sbjct: 1083 SGIEPTISTMHLLMVSYGKSGQPEEAENV 1111



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 49/383 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK  + E+A+ +   ML  G+KP++  Y+AL+ AY ++G  +EA  T N M
Sbjct: 463 TYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCM 522

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S  KPD   YS+++    +F+       +  EM   G       Y  ++    +   
Sbjct: 523 RR-SGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENM 581

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK-----WYN---------- 280
           ++ ++     M E  G +P +  ++S++   G   +  KM K      Y           
Sbjct: 582 WDVVDRIIRDMEELSGMNPQV--ISSVLVKGGCYDHAAKMLKVAISNGYELDHEIFLSIM 639

Query: 281 ----------------EFNLMGVKADIQTLN-----ILTKSYGRAGMYDKMRSVMDFMQK 319
                           EF+      DIQ +      IL K+       ++ RS  +  Q 
Sbjct: 640 SSYSSSARYSEACELLEFSREHAPNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQF 699

Query: 320 R--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           R    + +++   I  E F  A  I      F  M+  G++ +   Y  +VS Y +  L 
Sbjct: 700 RSCTMYESLIQECIQNELFDVASQI------FSDMRFNGVESSECLYQGMVSVYCRMDLP 753

Query: 378 MKVDSILRQVENSDVILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                +L   E + +ILD     +  I+  YG+    +K   L  ++++R    D   + 
Sbjct: 754 ETAHHLLYHAEKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWN 813

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
            +I AY   G  E A+ + N M+
Sbjct: 814 ALIHAYAFSGCYERARAIFNTMM 836



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 34/242 (14%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            YN ++  Y +  +F +++     M E G C PD+ + N++I+A   SG +E        
Sbjct: 251 VYNAMMGVYARNGRFSKVKELLDLMRERG-CVPDLVSFNTLINARMKSGAMEP------- 302

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            NL      +Q LN + +S  R                    P ++TYN +I    +  +
Sbjct: 303 -NLA-----LQLLNEVRRSGIR--------------------PDIITYNTLISACSRESN 336

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           +E+    F  M+    +P+  TY +++S Y +     K + + +++E+     D   +N 
Sbjct: 337 LEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNS 396

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           ++ A+ + G+ EK+ ++   M +R    D +T+ T+I  Y   G  + A  +   M +  
Sbjct: 397 LLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSG 456

Query: 462 EN 463
            N
Sbjct: 457 RN 458



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 38/310 (12%)

Query: 188  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
            Y  LI+ C +   FD+  +I ++M + G+E S   Y  ++  Y +     E         
Sbjct: 705  YESLIQECIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCRMD-LPETAHHLLYHA 763

Query: 248  ESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
            E  G     DI     ++  YG     +K E           K D +  N L  +Y  +G
Sbjct: 764  EKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSG 823

Query: 306  MYDKMRSVMDFMQKRFFFPTVVTYN----------------------------------- 330
             Y++ R++ + M +    PTV + N                                   
Sbjct: 824  CYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSIL 883

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            + +E F +AG++ ++++ +  MK  G  P    Y  ++    K   +  V+++L ++E +
Sbjct: 884  LTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEA 943

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
                D    N I+  Y    D + MG ++  +++    PD  T+ T+I  Y      E  
Sbjct: 944  GFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEG 1003

Query: 451  QNLENKMIAM 460
             +L NKM ++
Sbjct: 1004 FSLMNKMRSL 1013


>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 177/371 (47%), Gaps = 5/371 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  ++ KW   L++F  +++Q+WY A    ++KL+ ++GK  Q   A  LF  M + G
Sbjct: 103 FEELGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSG 162

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            +P   VY AL++A+     ++  L +A      MK +  C+P+V TY+IL+++  +   
Sbjct: 163 CRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARN 222

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            + +  +  ++    +     TYN ++D YGK     EMES  S M +S  C PDI T N
Sbjct: 223 VNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRM-KSNQCKPDIITFN 281

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG   + +KME+ +        +  + T N +  +YG+A   +   SV+  M K 
Sbjct: 282 LLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKMTKM 341

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            + P  +TY  +I  +G    + K  E F  M   G +    T  +++  Y   GL M+ 
Sbjct: 342 KYTPNFITYESLIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEA 401

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D +     N  ++ D+  +  +  AY +A   + + +L   M     +P+   F   + A
Sbjct: 402 DLLFDNARNVGLLPDSTTYKLLYKAYTKANMKKLVQKLLKHMDRDGIIPNKRFFLDALGA 461

Query: 441 YNALGMTEAAQ 451
           + +L  +   Q
Sbjct: 462 FKSLPASSGNQ 472



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 22/257 (8%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-----------GN 271
           Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S           G 
Sbjct: 135 YSKLISVMGKKGQTRMAMWLFSEMRNSG-CRPDSSVYNALITAHLHSKDKAKALIKALGY 193

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            EKM+       +   + ++ T NIL +++ +A   +++ ++   + +    P + TYN 
Sbjct: 194 FEKMK------GMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNG 247

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           V++ +GK G I +ME    +MK    KP+ IT+  L+ +Y K     K++ + + + +S 
Sbjct: 248 VMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSK 307

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
                P FN +I+ YG+A   E    +   M +    P+ IT+ ++I  Y        A+
Sbjct: 308 ERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAR 367

Query: 452 NLENKMIAMKENSGKKL 468
            + + MI     SGK++
Sbjct: 368 EIFDDMIE----SGKEV 380


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 191/406 (47%), Gaps = 36/406 (8%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E  ++  WQ +L++F  +++Q W +     +T ++ +LG+    E+   +F+ M S G+ 
Sbjct: 119 EFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVA 178

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
           PSV  +TAL++AYG++G    +   ++ MK      P + TY+ +I SC +    ++ + 
Sbjct: 179 PSVFSFTALINAYGRNGQYKSSLELLDRMKK-ERVSPSILTYNTVINSCARGGLDWEELL 237

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------- 246
            + A+M + GI+   VTYNT++    +    +E E  F  M                   
Sbjct: 238 GLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETF 297

Query: 247 ---------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
                          +ESGG  PDI + N ++ A+  SG+I++    + +    G   + 
Sbjct: 298 GKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNA 357

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T +IL   YGR G YD +R +   M+     P   TYNI+I  FG+ G+ +++   F  
Sbjct: 358 ATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHD 417

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M    ++PN  TY  L+ A  K GL      IL  +    V+  +  +  +I AYGQA  
Sbjct: 418 MVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAAL 477

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            E+    F TM E    P   T+ ++IQ +   G+ + ++ +  KM
Sbjct: 478 YEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKM 523



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 177/358 (49%), Gaps = 3/358 (0%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  L +F  +R +   QA   T+  L+    +    ++A ++F  M   G+ P +  Y+
Sbjct: 233 WEELLGLFAQMRHEG-IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYS 291

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            LV  +G+   L++    + +M+S     PD+ +Y++L+++  +         +  +M  
Sbjct: 292 YLVETFGKLNRLEKVSELLKEMES-GGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQG 350

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G   +A TY+ +++ YG+  +++++   F  M  S    P+  T N +I+ +G  G  +
Sbjct: 351 AGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSN-TEPNAATYNILINVFGEGGYFK 409

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           ++   +++     V+ +++T   L  + G+ G+++  + ++  M ++   P+   Y  VI
Sbjct: 410 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVI 469

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           E +G+A   E+    F  M   G KP   TY SL+  ++K GL  + ++IL ++  S V 
Sbjct: 470 EAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVA 529

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            +   FN +I A+ Q G  E+  + ++ M++  C PD  T   ++  Y   G+ E ++
Sbjct: 530 RNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESE 587



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 2/354 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK  + E+ S L + M S G  P +  Y  L+ A+ QSG + EA      M
Sbjct: 289 TYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 348

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C P+  TYSIL+    +  R+D +  +  EM     E +A TYN +I+ +G+   
Sbjct: 349 QG-AGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGY 407

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  MVE     P++ T   +I A G  G  E  +K     N  GV    +   
Sbjct: 408 FKEVVTLFHDMVEEN-VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYT 466

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + ++YG+A +Y++     + M +    PTV TYN +I+ F K G  ++ E    KM   
Sbjct: 467 GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 526

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  T+  ++ A+ + G   +      ++E +    D      ++S Y  AG VE+ 
Sbjct: 527 GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEES 586

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
            E F  +K    +P  + +  M+  Y      + A  L ++M   + ++  ++I
Sbjct: 587 EEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVI 640



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 154/314 (49%), Gaps = 2/314 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I    +    +  +
Sbjct: 107 KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQ 166

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +I  EM   G+  S  ++  +I+ YG+  +++        M +     P I T N++I++
Sbjct: 167 EIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKER-VSPSILTYNTVINS 225

Query: 266 YGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               G + E++   + +    G++ADI T N L  +  R G+ D+   V   M +    P
Sbjct: 226 CARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILP 285

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            + TY+ ++ETFGK   +EK+ E  K+M+  G  P+  +Y  L+ A++++G I +   + 
Sbjct: 286 DITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVF 345

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           RQ++ +  + +   ++ +++ YG+ G  + + +LFL MK  +  P+  T+  +I  +   
Sbjct: 346 RQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEG 405

Query: 445 GMTEAAQNLENKMI 458
           G  +    L + M+
Sbjct: 406 GYFKEVVTLFHDMV 419


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 195/407 (47%), Gaps = 38/407 (9%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E  ++  WQ +L++F  +++Q W +     +T ++ +LG+    ++   +F+ M S+G+ 
Sbjct: 109 EFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVA 168

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            +V VYTA+++AYG++G    +   +N MK      P + TY+ +I +C +    ++ + 
Sbjct: 169 RTVYVYTAVINAYGRNGQFHASLELLNGMKQ-ERVSPSILTYNTVINACARGGLDWEGLL 227

Query: 206 KILAEMSYLGIECSAVTYNTIIDG-----------------------------------Y 230
            + AEM + GI+   +TYNT++                                     +
Sbjct: 228 GLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF 287

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK  + E++      M ESGG  PDI + N ++ AY   G+I++    + +    G  A+
Sbjct: 288 GKLNRLEKVSELLREM-ESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVAN 346

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T ++L   YG+ G YD +R +   M+     P   TYNI+I+ FG+ G+ +++   F 
Sbjct: 347 AATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFH 406

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M    ++PN  TY  L+ A  K GL      IL  +    ++  +  +  +I A+GQA 
Sbjct: 407 DMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAA 466

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E+   +F TM E    P   T+ + I A+   G+ + A+ + ++M
Sbjct: 467 LYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRM 513



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 180/361 (49%), Gaps = 9/361 (2%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDGLKPSVD 150
           W+  L +F  +R +   Q    T+  L   LG C      ++A ++F  M   G+ P ++
Sbjct: 223 WEGLLGLFAEMRHEG-IQPDVITYNTL---LGACAHRGLGDEAEMVFRTMNESGIVPDIN 278

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y+ LV  +G+   L++    + +M+S  +  PD+ +Y++L+++  +         +  +
Sbjct: 279 TYSYLVQTFGKLNRLEKVSELLREMESGGNL-PDITSYNVLLEAYAELGSIKEAMDVFRQ 337

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   +A TY+ +++ YGK  +++++   F  M  S    PD  T N +I  +G  G
Sbjct: 338 MQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSN-TDPDAGTYNILIQVFGEGG 396

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             +++   +++     V+ +++T   L  + G+ G+Y+  + ++  M ++   P+   Y 
Sbjct: 397 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYT 456

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VIE FG+A   E+    F  M   G  P   TY S + A+++ GL  + ++IL ++  S
Sbjct: 457 GVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNES 516

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  D   FN +I A+ Q G  E+  + ++ M++ +C P+ +T   ++  Y + G+ + +
Sbjct: 517 GLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDES 576

Query: 451 Q 451
           +
Sbjct: 577 E 577



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 149/314 (47%), Gaps = 2/314 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I    +    D   
Sbjct: 97  KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCR 156

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++  EM   G+  +   Y  +I+ YG+  +F       + M +     P I T N++I+A
Sbjct: 157 EVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQER-VSPSILTYNTVINA 215

Query: 266 YGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               G + E +   + E    G++ D+ T N L  +    G+ D+   V   M +    P
Sbjct: 216 CARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVP 275

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            + TY+ +++TFGK   +EK+ E  ++M+  G  P+  +Y  L+ AY++ G I +   + 
Sbjct: 276 DINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVF 335

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           RQ++ +  + +   ++ +++ YG+ G  + + ++FL MK  +  PD  T+  +IQ +   
Sbjct: 336 RQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEG 395

Query: 445 GMTEAAQNLENKMI 458
           G  +    L + M+
Sbjct: 396 GYFKEVVTLFHDMV 409



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 133/262 (50%), Gaps = 2/262 (0%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           A   T++ L+ + GK  + +    +F  M      P    Y  L+  +G+ G   E  + 
Sbjct: 345 ANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTL 404

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            +DM    + +P++ TY  LI +C K   ++  +KIL  M+  GI  S+  Y  +I+ +G
Sbjct: 405 FHDMVE-ENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFG 463

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +A  +EE    F+ M E G  +P + T NS I A+   G  ++ E   +  N  G+K D+
Sbjct: 464 QAALYEEALVVFNTMNEVG-SNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDV 522

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            + N + K++ + G Y++       M+K    P  +T  +V+  +  AG +++ EE F++
Sbjct: 523 HSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQE 582

Query: 352 MKHRGMKPNSITYCSLVSAYSK 373
           +K  G+ P+ + YC +++ Y+K
Sbjct: 583 IKASGILPSVMCYCLMLALYAK 604



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 147/328 (44%), Gaps = 35/328 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+   GK  + E+ S L   M S G  P +  Y  L+ AY + G + EA      
Sbjct: 278 NTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQ 337

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++ + C  +  TYS+L+    K  R+D +  I  EM     +  A TYN +I  +G+  
Sbjct: 338 MQA-AGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGG 396

Query: 235 KFEEMESSFSAMVES------------------GGCHPD----IFTLN------------ 260
            F+E+ + F  MVE                   GG + D    +  +N            
Sbjct: 397 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYT 456

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I A+G +   E+    +N  N +G    ++T N    ++ R G+Y +  +++  M + 
Sbjct: 457 GVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNES 516

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                V ++N VI+ F + G  E+  + + +M+    +PN +T   ++S Y  AGL+ + 
Sbjct: 517 GLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDES 576

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQ 408
           +   ++++ S ++     +  +++ Y +
Sbjct: 577 EEQFQEIKASGILPSVMCYCLMLALYAK 604



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 2/203 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+  L+   GK    E A  +   M   G+ PS   YT ++ A+GQ+ L +EA    N 
Sbjct: 418 ETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNT 477

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M  V    P V TY+  I +  +   +   E IL+ M+  G++    ++N +I  + +  
Sbjct: 478 MNEVGS-NPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGG 536

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++EE   S+  M E   C P+  TL  ++S Y ++G +++ E+ + E    G+   +   
Sbjct: 537 QYEEAVKSYVEM-EKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCY 595

Query: 295 NILTKSYGRAGMYDKMRSVMDFM 317
            ++   Y +    +   +++D M
Sbjct: 596 CLMLALYAKNDRLNDAYNLIDEM 618


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 38/364 (10%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTI 172
              +T L+    +  +   A  +F+ M+  G++P++  Y  +  AY +  +   E  + +
Sbjct: 184 ASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALV 243

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           + MK     + D YTY+ LI  C +        ++  EM   G E   VT+N+++D YGK
Sbjct: 244 DSMKE-DGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGK 302

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A+K EE       M E+ GC P + T NS+ISAY   G +E+  +   E    G+K D+ 
Sbjct: 303 ARKHEEAIGVLKRM-ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 361

Query: 293 TL-----------------------------------NILTKSYGRAGMYDKMRSVMDFM 317
           T                                    N L K +G  G + +M +V D +
Sbjct: 362 TYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDL 421

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +   + P VVT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL 
Sbjct: 422 RSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLF 481

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   I +++  + +  D   +N ++SA  + G  E+  +LF  M +R C PD ++++++
Sbjct: 482 DQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSL 541

Query: 438 IQAY 441
           + AY
Sbjct: 542 LHAY 545



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 166/349 (47%), Gaps = 5/349 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+ + GK ++ E+A  + + M + G  PSV  Y +L+SAY + GLL+EA     +M
Sbjct: 292 TFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEM 351

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     KPDV TY+ LI    +  + D      +EM   G   +  TYN +I  +G   K
Sbjct: 352 E-FRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGK 410

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM + F  +  S G  PD+ T N+++S +G +G   ++   + E    G   +  T  
Sbjct: 411 FTEMMAVFDDL-RSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 469

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  SY R G++D+   +   M +   +P + TYN V+    + G  E+ E+ F +M  R
Sbjct: 470 SLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDR 529

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KP+ ++Y SL+ AY+ A  + K+ ++   +    +         ++    +  ++ + 
Sbjct: 530 DCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPET 589

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            + F  ++ R C  D      M+  Y   G  +  + +E  +  M ENS
Sbjct: 590 EKAFQELRRRRCSLDINVLNAMVSIY---GKNKMVKKVEEVLSLMMENS 635



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 172/366 (46%), Gaps = 4/366 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           + K+   + +F  LR    Y     T+  L+ + G+     + S +F+ M   G  P  D
Sbjct: 408 RGKFTEMMAVFDDLRSAG-YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERD 466

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y +L+S+Y + GL D+A      M   +   PD+ TY+ ++ +  +  R++  EK+ AE
Sbjct: 467 TYVSLISSYSRCGLFDQAMEIYKRMIE-AGIYPDISTYNAVLSALARGGRWEQAEKLFAE 525

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M     +   ++Y++++  Y  AKK ++M++  S  + +       + + +++       
Sbjct: 526 MVDRDCKPDELSYSSLLHAYANAKKLDKMKT-LSEDIYAERIERHNWLVKTLVLVNNKVN 584

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N+ + EK + E        DI  LN +   YG+  M  K+  V+  M +     +  TYN
Sbjct: 585 NLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYN 644

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++  + + G  EK E    ++K  GM+P+  +Y +++ AY + G + +   +  +++ S
Sbjct: 645 SLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 704

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA 449
            V  D   +N  I +Y      E+  +L   +  + C P+  TF +++Q Y+  G M EA
Sbjct: 705 GVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEA 764

Query: 450 AQNLEN 455
              L N
Sbjct: 765 KSFLSN 770



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 159/338 (47%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G   +  +   +F+ + S G  P V  +  L+S +GQ+GL  E      +M
Sbjct: 397 TYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEM 456

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P+  TY  LI S ++   FD   +I   M   GI     TYN ++    +  +
Sbjct: 457 KKAGYI-PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGR 515

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E+ E  F+ MV+   C PD  + +S++ AY N+  ++KM+    +     ++     + 
Sbjct: 516 WEQAEKLFAEMVDRD-CKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVK 574

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +     +       +++R     +   N ++  +GK   ++K+EE    M   
Sbjct: 575 TLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMEN 634

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +  ++ TY SL+  YS+ G   K +SIL ++++S +  D   +N +I AYG+ G +++ 
Sbjct: 635 SINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEA 694

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             LF  MK     PD +T+   I++Y A  M E A +L
Sbjct: 695 SRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDL 732



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           V    +  + ++G L EA + +    +     PD   Y+ L+ + ++  RF     +   
Sbjct: 155 VLPTAIRVFARAGCLAEASAILEAAPA-----PDASAYTALVSAFSRAGRFRDAVAVFQR 209

Query: 211 MSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           M   G++ + VTYN +   Y K +  ++E+ +   +M E  G   D +T N++IS     
Sbjct: 210 MVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKED-GIERDRYTYNTLISCCRRR 268

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G   +  + ++E    G + D  T N L   YG+A  +++   V+  M+     P+VVTY
Sbjct: 269 GLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTY 328

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I  + K G +E+  E  ++M+ RGMKP+ +TY +L+S   + G I    +   ++  
Sbjct: 329 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVR 388

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +    +   +N +I  +G  G   +M  +F  ++    VPD +T+ T++  +   G+
Sbjct: 389 NGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGL 445



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 35/271 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE-------- 167
           T+  ++  L +  + EQA  LF  M+    KP    Y++L+ AY  +  LD+        
Sbjct: 502 TYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDI 561

Query: 168 -----------------AFSTINDMKSVSD---------CKPDVYTYSILIKSCTKFHRF 201
                              + +N++              C  D+   + ++    K    
Sbjct: 562 YAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMV 621

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
             +E++L+ M    I  SA TYN+++  Y +    E+ ES  +  ++S G  PD ++ N+
Sbjct: 622 KKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTE-IKSSGMRPDRYSYNT 680

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I AYG  G +++  + ++E    GVK DI T NI  KSY    M+++   ++ ++  + 
Sbjct: 681 VIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQG 740

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             P   T+N +++ + + G + + + +   +
Sbjct: 741 CRPNERTFNSILQGYSRHGRMVEAKSFLSNL 771



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           + L    + + RAG   +  ++++        P    Y  ++  F +AG        F++
Sbjct: 154 RVLPTAIRVFARAGCLAEASAILEAAPA----PDASAYTALVSAFSRAGRFRDAVAVFQR 209

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           M   G++P  +TY  +  AYSK  +  K V +++  ++   +  D   +N +IS   + G
Sbjct: 210 MVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRG 269

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
              +  ++F  MK     PD +TF +++  Y      E A  +  +M    EN+G
Sbjct: 270 LHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRM----ENAG 320


>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 182/350 (52%), Gaps = 9/350 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++F   + +  ++A  + + K++   G+  QP+ A+ LF+ M   G+K +   + AL+ +
Sbjct: 1   QVFNWKKSKLGWEANPKEYAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHS 60

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           YG++    +A     DMK+ +DC+P + TY+ LI   ++    + ++K+  +    G   
Sbjct: 61  YGRNNEAHKALQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSP 120

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TYN +I GY +A +  +ME +F+ + ++G C  D+ T N+ I  Y  +  + KME  
Sbjct: 121 DRHTYNALIWGYMRAGQLSQMEETFNEL-QAGECKADVITYNAQIIGYARANAVNKMEAV 179

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV----VTYNIVIE 334
           ++     G+  +     IL + Y R   ++KM + +  M      P V      +++VIE
Sbjct: 180 FSSMQAAGIPINAMVGEILIEVYSRTKHFEKMENALKIMD---VTPGVQYGSRVHSMVIE 236

Query: 335 TFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           ++  A  +++ME    +M +++ M  +  +  +L+ AYS+AG   ++   +  V+ +  I
Sbjct: 237 SYADANKLDEMEAAISRMFQNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGWI 296

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L +  +N +IS YG+ G +++M ++F  M +  C P   TF  MI AY A
Sbjct: 297 LQSSIYNILISEYGKGGHLDRMEQVFREMMDASCPPSFETFQYMIDAYEA 346



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 2/260 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ +I    +  +  L   +  EM   GI+ +AV++N +I  YG+  +  +    F  M 
Sbjct: 19  YAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKALQLFEDMK 78

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            +  C P + T N++IS Y   G  E+M+K + +    G   D  T N L   Y RAG  
Sbjct: 79  ATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMRAGQL 138

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +M    + +Q       V+TYN  I  + +A  + KME  F  M+  G+  N++    L
Sbjct: 139 SQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVGEIL 198

Query: 368 VSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KER 425
           +  YS+     K+++ L+ ++    V   +   + +I +Y  A  +++M      M + +
Sbjct: 199 IEVYSRTKHFEKMENALKIMDVTPGVQYGSRVHSMVIESYADANKLDEMEAAISRMFQNK 258

Query: 426 HCVPDNITFATMIQAYNALG 445
                  +   +I AY+  G
Sbjct: 259 RMFSSPKSLHALIMAYSRAG 278



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-------MYDKMRSVM 314
           MIS  G     +     ++E    G+K    + N L  SYGR         +++ M++  
Sbjct: 22  MISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKALQLFEDMKATN 81

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D        PT+VTYN +I  + + G  E+M++ F   K  G  P+  TY +L+  Y +A
Sbjct: 82  DCQ------PTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMRA 135

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +++    +++  +   D   +N  I  Y +A  V KM  +F +M+      + +  
Sbjct: 136 GQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVG 195

Query: 435 ATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
             +I+ Y+    T+  + +EN +  M    G
Sbjct: 196 EILIEVYS---RTKHFEKMENALKIMDVTPG 223


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 198/411 (48%), Gaps = 23/411 (5%)

Query: 68  VSSKKYKNLW------PK------PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           ++ K ++++W      P+       ++E + E  + + W+  + I   + Q   ++    
Sbjct: 25  IAQKSHQDVWDVLDALPRGIGTWEAIMENVAELRRLRNWRSVILILEWILQGTMFKPDVG 84

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  L+   GK KQ  +A   F +M      P+   +  L++AY +   L++A    ++M
Sbjct: 85  CFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEM 144

Query: 176 KSVSDCKPD---------VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           K  S+  P          + TY+  ++   K  R    E    +M   GI  +  T+  +
Sbjct: 145 KE-SNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIM 203

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+ YGKA   ++ +  F +M     C P+++T  ++++A+   GN  + E+ + E   +G
Sbjct: 204 INIYGKAYYSDKADDLFRSM-RKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVG 262

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              D+ T N L ++Y R       + V   M +    P  V+YNI+I+ FG+AG     +
Sbjct: 263 FIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQ 322

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             +  MK  G KP   ++  L+S+Y+KAG + + + ++R++ENS V  DT  FN ++SAY
Sbjct: 323 AVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAY 382

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G +G +++M  L  +M      PD  T  T+I AY   G  E A+ + N +
Sbjct: 383 GNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSL 433



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 183/366 (50%), Gaps = 12/366 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K K+W+ A K F L++  Q       +F  L+    +  Q E+A  LF  M    
Sbjct: 90  IDAYGKSKQWREAEKTFHLMKDFQCLPTET-SFNVLLAAYSRGVQLEKAEKLFHEMKESN 148

Query: 145 LKPS---------VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
             P          +  Y   +   G+SG L +A  T  DM+      P V T++I+I   
Sbjct: 149 YSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQK-QGILPAVNTFTIMINIY 207

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K +  D  + +   M       +  TY  +++ + +       E  F A ++S G  PD
Sbjct: 208 GKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIF-AELQSVGFIPD 266

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           ++T N+++ AY    +    ++ +      GV+ D  + NIL  ++GRAG+    ++V D
Sbjct: 267 VYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYD 326

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M++  F PT+ ++ +++ ++ KAG + + E   +++++ G+KP++  + SL+SAY  +G
Sbjct: 327 SMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSG 386

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I +++S+L  + +S    D    N +I+AY Q G +EK  E+F +++ +   PD +++ 
Sbjct: 387 RIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWT 446

Query: 436 TMIQAY 441
           +++ AY
Sbjct: 447 SLMGAY 452



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 155/318 (48%), Gaps = 2/318 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+   + +LGK  +  QA   F  M   G+ P+V+ +T +++ YG++   D+A      M
Sbjct: 164 TYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSM 223

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C P++YTY+ L+ +  +       E+I AE+  +G      TYN +++ Y + + 
Sbjct: 224 RK-ALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEH 282

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
               +  F AMVE+G   PD  + N +I A+G +G     +  Y+     G K  +++  
Sbjct: 283 PTGAKEVFQAMVEAG-VRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHM 341

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L  SY +AG   +   ++  ++     P    +N ++  +G +G I++ME   + M   
Sbjct: 342 LLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSS 401

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KP+  T  +L++AY++ G I K + +   +E+  +  D   +  ++ AY Q     K 
Sbjct: 402 VAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKC 461

Query: 416 GELFLTMKERHCVPDNIT 433
             +F  M +  C+PD  T
Sbjct: 462 VSIFQKMVKAGCIPDRAT 479



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 164/321 (51%), Gaps = 6/321 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+Q       TFT ++ + GK    ++A  LF  M      P++  YTAL++A+ + G  
Sbjct: 189 QKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNC 248

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A     +++SV    PDVYTY+ L+++ ++       +++   M   G+    V+YN 
Sbjct: 249 VRAEEIFAELQSVGFI-PDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNI 307

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +ID +G+A    + ++ + +M E+G   P + +   ++S+Y  +G + + E+   E    
Sbjct: 308 LIDAFGRAGLTADAQAVYDSMKEAG-FKPTMKSHMLLLSSYAKAGKVTEAERLVREIENS 366

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GVK D    N L  +YG +G  D+M S+++ M      P + T N +I  + + G+IEK 
Sbjct: 367 GVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKA 426

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           EE F  ++ +G+ P+ +++ SL+ AY++  L  K  SI +++  +  I D       +S+
Sbjct: 427 EEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSS 486

Query: 406 YGQAGDVEKMGELFLTMKERH 426
                 V+++ +    M ERH
Sbjct: 487 CRSPEQVKEVTD----MIERH 503


>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 176/363 (48%), Gaps = 5/363 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  K  KW   L++F  +++Q+WY      ++KL+ ++GK  Q   A  LF  M + G
Sbjct: 104 FEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSG 163

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            +P   VY AL++A+     ++  L++    ++ MK +  C+P+V TY+IL+++  +  +
Sbjct: 164 CRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGK 223

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D +  +  ++    +     T+N ++D YGK    +EME+  + M  S  C PDI T N
Sbjct: 224 VDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFN 282

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG     EKME+ +        K  + T N +  +YG+A M DK   V   M   
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDM 342

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            + P+ +TY  +I  +G  G + +  E F+++        + T  +++  Y + GL ++ 
Sbjct: 343 NYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEA 402

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D +        V  D   +  +  AY +A   E++  L   M++   VP+   F   ++ 
Sbjct: 403 DKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEV 462

Query: 441 YNA 443
           + +
Sbjct: 463 FGS 465


>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2453; Flags: Precursor
 gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
 gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
 gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
 gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 563

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 176/363 (48%), Gaps = 5/363 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  K  KW   L++F  +++Q+WY      ++KL+ ++GK  Q   A  LF  M + G
Sbjct: 104 FEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSG 163

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            +P   VY AL++A+     ++  L++    ++ MK +  C+P+V TY+IL+++  +  +
Sbjct: 164 CRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGK 223

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D +  +  ++    +     T+N ++D YGK    +EME+  + M  S  C PDI T N
Sbjct: 224 VDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFN 282

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG     EKME+ +        K  + T N +  +YG+A M DK   V   M   
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDM 342

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            + P+ +TY  +I  +G  G + +  E F+++        + T  +++  Y + GL ++ 
Sbjct: 343 NYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEA 402

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D +        V  D   +  +  AY +A   E++  L   M++   VP+   F   ++ 
Sbjct: 403 DKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEV 462

Query: 441 YNA 443
           + +
Sbjct: 463 FGS 465


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 184/379 (48%), Gaps = 15/379 (3%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF---EVMLSD 143
           +++ Q  WQ AL+++  L  QQWY    +    ++ +LGK  Q   A  +F   E +++D
Sbjct: 203 KSVGQSSWQRALELYECLTMQQWYATNARMVATILSVLGKANQEGIAVEIFAKAESVIAD 262

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI----KSCTKFH 199
               +V VY A++  Y ++G  ++     N M+    C+PD+ +++ LI    KSC    
Sbjct: 263 ----TVQVYNAMMGVYARNGNFEKVNEMFNLMRE-RGCEPDIVSFNTLINAKVKSCATVS 317

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              +  ++L E+   G+    +TYNT+I    +    +E    FS M ES  C PD++T 
Sbjct: 318 GLAI--ELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHM-ESNRCQPDLWTY 374

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+MIS YG  G   K E  + +    G   D  T N L  ++ + G  +K+R + + M K
Sbjct: 375 NAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVK 434

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             F    +TYN +I  +GK G  ++    ++ MK  G  P+++TY  L+    KA  I +
Sbjct: 435 MGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEE 494

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              ++ ++ ++ V      ++ +I AY + G   +  E F  M+E     D++ ++ M+ 
Sbjct: 495 ASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLD 554

Query: 440 AYNALGMTEAAQNLENKMI 458
            +      + A  L  +MI
Sbjct: 555 FFLRFNEIKKAAALYQEMI 573



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 181/415 (43%), Gaps = 38/415 (9%)

Query: 81   VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
            +++ ++   K K WQ A  I   LRQ+     R + +  L+         E+A  +F  M
Sbjct: 792  IIDIIETYGKLKMWQSAESIVENLRQRCSKMDR-KVWNALIHAYAFSGCYERARAIFNTM 850

Query: 141  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK------------------ 182
            + +G  P+V+    L+ A    G L E +  I +++ + D K                  
Sbjct: 851  MREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDM-DLKISKSSILLMLEAFAQAGN 909

Query: 183  -----------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
                             P ++ Y ++I    +F R   +  +L+EM   G +     +N+
Sbjct: 910  LFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNS 969

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            ++  Y   ++F+ M   +  M++  G  PD  T N++I+ Y      E+     ++   +
Sbjct: 970  VLKLYSSIEEFQNMGVIYQ-MIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSL 1028

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G++    T   +  ++ +  +YD+   + + ++   +      Y+++++ +  +G  +K 
Sbjct: 1029 GLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKA 1088

Query: 346  EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E   + MK  G++PN+ T   L+ +Y K+G   + D IL+ +     +LDT  ++ +I A
Sbjct: 1089 ENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDA 1148

Query: 406  YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            Y + GD +   E    MKE    PD+  +   I+A +  G    A NL N + A+
Sbjct: 1149 YLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAV 1203



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 5/275 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    ++A  +F  M S+  +P +  Y A++S YG+ G   +A      +
Sbjct: 338 TYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKL 397

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           KS +   PD  TY+ L+ + +K    + +  I  EM  +G     +TYNTII  YGK  +
Sbjct: 398 KS-NGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGR 456

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    +  M +S G +PD  T   +I   G +  IE+  K  +E    GVK  + T +
Sbjct: 457 HDEALRLYRDM-KSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYS 515

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y + G   +     + M++       + Y+++++ F +   I+K    +++M   
Sbjct: 516 ALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEA 575

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           G  P++  Y  ++ A  +  +    D I R V+++
Sbjct: 576 GFTPDTGLYEVMLPALVRENM---GDVIERVVQDT 607



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 7/256 (2%)

Query: 113 RCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           RCQ    T+  ++ + G+C    +A  LFE + S+G  P    Y +L+ A+ + G  ++ 
Sbjct: 366 RCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKV 425

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
                +M  +   K D  TY+ +I    K  R D   ++  +M   G    AVTY  +ID
Sbjct: 426 RDISEEMVKMGFGK-DEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLID 484

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
             GKA K EE     S M+++G   P + T +++I AY   G   + E+ +N     G+K
Sbjct: 485 LLGKASKIEEASKVMSEMLDAG-VKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIK 543

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
           AD    +++   + R     K  ++   M +  F P    Y +++    +    + +E  
Sbjct: 544 ADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERV 603

Query: 349 FKKMKHRG-MKPNSIT 363
            +  K  G M P+ I+
Sbjct: 604 VQDTKELGSMNPHDIS 619



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 148/379 (39%), Gaps = 41/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+ +LGK  + E+AS +   ML  G+KP++  Y+AL+ AY + G   EA  T N M
Sbjct: 478 TYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRM 537

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S  K D   YS+++    +F+       +  EM   G       Y  ++    +   
Sbjct: 538 RE-SGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENM 596

Query: 236 FEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEK--MEKWYN------------ 280
            + +E       E G  +P DI ++      Y +   + K  +   Y             
Sbjct: 597 GDVIERVVQDTKELGSMNPHDISSVLVKGGCYDHGAKMLKVAISNGYELDREIFLSIMSS 656

Query: 281 --------------EFNLMGVKADIQTLN-----ILTKSYGRAGMYDKMRSVMDFMQKRF 321
                         EF       DIQ +      IL K+       ++ RS         
Sbjct: 657 YSSSARYSEACELVEFFREHAPDDIQMITEALIIILCKAGKLDAALEEYRSRGGLGT--- 713

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
            F +   Y  +I    K+   +   + F  M+  G++P+   Y S+VS Y + G      
Sbjct: 714 -FRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQ 772

Query: 382 SILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            +L   E +D+ILD  T     II  YG+    +    +   +++R    D   +  +I 
Sbjct: 773 HLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIH 832

Query: 440 AYNALGMTEAAQNLENKMI 458
           AY   G  E A+ + N M+
Sbjct: 833 AYAFSGCYERARAIFNTMM 851



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR--AGMYDKMRSVMDFM 317
           N+M+  Y  +GN EK+ + +N     G + DI + N L  +  +  A +      ++D +
Sbjct: 268 NAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEV 327

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            K    P ++TYN +I    +  ++++    F  M+    +P+  TY +++S Y + G  
Sbjct: 328 GKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFA 387

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
           +K + +  +++++    D   +N ++ A+ + G+ EK+ ++   M +     D +T+ T+
Sbjct: 388 LKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTI 447

Query: 438 IQAYNALGMTEAAQNLENKMIAMKEN 463
           I  Y   G  + A  L   M +   N
Sbjct: 448 IHMYGKHGRHDEALRLYRDMKSSGRN 473



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 136/347 (39%), Gaps = 45/347 (12%)

Query: 151  VYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  AL+    ++G LD   E + +   + +   C      Y  LI  CTK  +FD+  ++
Sbjct: 684  ITEALIIILCKAGKLDAALEEYRSRGGLGTFRSCT----MYESLIHECTKSEQFDIASQL 739

Query: 208  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN--SMISA 265
             ++M + G+E S   Y +++  Y +   F E         E      D  T++   +I  
Sbjct: 740  FSDMRFNGVEPSECLYQSMVSVYCRIG-FPETAQHLLYHAEKNDIILDNVTVHIIDIIET 798

Query: 266  YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
            YG     +  E           K D +  N L  +Y  +G Y++ R++ + M +    PT
Sbjct: 799  YGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPT 858

Query: 326  VVTYN-----------------------------------IVIETFGKAGHIEKMEEYFK 350
            V + N                                   +++E F +AG++ ++++ + 
Sbjct: 859  VESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYN 918

Query: 351  KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
             MK  G  P    Y  ++    +   +  V  +L ++  +    D   FN ++  Y    
Sbjct: 919  GMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIE 978

Query: 411  DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            + + MG ++  +++    PD  T+ T+I  Y      E   +L +KM
Sbjct: 979  EFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKM 1025


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 169/362 (46%), Gaps = 38/362 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIND 174
            +T L+    +  +   A  +F  M+  G++P++  Y  ++  Y +  +   E    +  
Sbjct: 174 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 233

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      PD YTY+ LI  C +   +    ++  EM   G E   VT+N+++D YGKA+
Sbjct: 234 MKE-HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKAR 292

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E       M E  GC P + T NS+IS+Y   G +E+      E  + G+K D+ T 
Sbjct: 293 RHDEAIEVIQEM-ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTY 351

Query: 295 -----------------------------------NILTKSYGRAGMYDKMRSVMDFMQK 319
                                              N L K +G  G + +M +V D ++ 
Sbjct: 352 TTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRS 411

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             F P +VT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL   
Sbjct: 412 AGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDL 471

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              I +++  + +  D   +N ++SA  + G  E+  +LF  M+ER C PD  ++++++ 
Sbjct: 472 AMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLH 531

Query: 440 AY 441
           AY
Sbjct: 532 AY 533



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 169/349 (48%), Gaps = 5/349 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+ + GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL++A +   +M
Sbjct: 280 TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 339

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V   KPDV TY+ LI    +  + D       EM   G + +  TYN +I  +G   K
Sbjct: 340 E-VKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGK 398

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM + F  +  S G  PDI T N++++ +G +G   ++   + E    G   +  T  
Sbjct: 399 FPEMMAVFDEL-RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  SY R G++D    +   M +   +P V TYN V+    + G  E+ E+ F +M+ R
Sbjct: 458 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER 517

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KP+  +Y SL+ AY+ A  + K+ ++   + +  +         ++    +  ++ + 
Sbjct: 518 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEA 577

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            + FL ++++ C  D      M+  Y   G     + +E  +  MKE++
Sbjct: 578 EKAFLELRQKRCSLDINVLNAMVSIY---GKNRMVRKVEKILSLMKESA 623



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 172/347 (49%), Gaps = 10/347 (2%)

Query: 116 TFTKLMVMLG-KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  L+ M G + K PE  ++ F+ + S G  P +  +  L++ +GQ+GL  E      +
Sbjct: 385 TYNALIKMHGVRGKFPEMMAV-FDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 443

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      P+  TY  LI S ++   FDL  +I   M   GI     TYN ++    +  
Sbjct: 444 MKKAGYI-PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGG 502

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---I 291
           ++E+ E  F+ M E   C PD ++ +S++ AY N+  ++KM+   ++     ++     +
Sbjct: 503 RWEQAEKLFAEM-EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLV 561

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +TL ++        + +  ++ ++  QKR     +   N ++  +GK   + K+E+    
Sbjct: 562 KTLVLVNSKVN--NLAEAEKAFLELRQKRCSL-DINVLNAMVSIYGKNRMVRKVEKILSL 618

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK   +  ++ TY SL+  YS+ G   K ++IL ++++S V  D   +N +I AYG+ G 
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +++   LF  MK     PD +T+   +++Y +  M E A  L   M+
Sbjct: 679 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 156/326 (47%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D A      M
Sbjct: 420 TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRM 479

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PDV TY+ ++ +  +  R++  EK+ AEM     +    +Y++++  Y  AK+
Sbjct: 480 ME-AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKR 538

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++M++  S  + S    P  + + +++       N+ + EK + E        DI  LN
Sbjct: 539 LDKMKA-LSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLN 597

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YG+  M  K+  ++  M++     +  TYN ++  + + G  EK E    ++K  
Sbjct: 598 AMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSS 657

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+  +Y +++ AY + G + +   +  +++ S +  D   +N  + +Y      E+ 
Sbjct: 658 GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEA 717

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            EL   M  + C P+  T+ ++++ Y
Sbjct: 718 IELVRYMVTQGCKPNERTYNSIVEGY 743



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +C   + A  +++ M+  G+ P V  Y A++SA  + G  ++A     +M
Sbjct: 455 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 514

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   DCKPD Y+YS L+ +     R D ++ +  ++    IE       T++    K   
Sbjct: 515 EE-RDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNN 573

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E +F  + +   C  DI  LN+M+S YG +  + K+EK  +      +     T N
Sbjct: 574 LAEAEKAFLELRQKR-CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYN 632

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y R G  +K  +++  ++     P   +YN VI  +G+ G +++    F +MK  
Sbjct: 633 SLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 692

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G+KP+ +TY   V +Y    +  +   ++R +       +   +N I+  Y + G
Sbjct: 693 GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 747



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           + LA++I+  + +   Y     T+  ++  L +  + EQA  LF  M     KP    Y+
Sbjct: 469 FDLAMQIYKRMMEAGIY-PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 154 ALVSAYGQSGLLDE-------------------------AFSTINDMKSVSD-------- 180
           +L+ AY  +  LD+                           S +N++             
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587

Query: 181 -CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C  D+   + ++    K      +EKIL+ M    I  SA TYN+++  Y +    E+ 
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E+  +  ++S G  PD ++ N++I AYG  G +++  + ++E    G+K D+ T NI  K
Sbjct: 648 ENILTE-IKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVK 706

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
           SY    M+++   ++ +M  +   P   TYN ++E + + G +
Sbjct: 707 SYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKL 749



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVM---LGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           KI  L+++         T+  LM M   LG C++ E  ++L E+  S G++P    Y  +
Sbjct: 614 KILSLMKESA-INLSAATYNSLMHMYSRLGDCEKCE--NILTEIK-SSGVRPDRYSYNTV 669

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG+ G + EA    ++MK  S  KPDV TY+I +KS      F+   +++  M   G
Sbjct: 670 IYAYGRKGQMKEASRLFSEMK-CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQG 728

Query: 216 IECSAVTYNTIIDGYGKAKKFEE 238
            + +  TYN+I++GY +  K  +
Sbjct: 729 CKPNERTYNSIVEGYCRNGKLTD 751



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGE 417
           P++  Y +LVSA+S+AG      ++ R++ +S V      +N ++  Y + A   +++ E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGM-TEAAQ 451
           L  +MKE    PD  T+ T+I       +  EAAQ
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQ 264


>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
 gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
          Length = 416

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 193/408 (47%), Gaps = 9/408 (2%)

Query: 32  KRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQ 91
           K+ P P  E    K   ++L ++L   F+ K    K  +K  K +  +      +E  K 
Sbjct: 11  KKRPVPTDE----KSEAQELVRVLVRSFSDKQPLVKTLNKYVKVMRTEHCFMLFEELGKT 66

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
            KW   L++F  +++Q+WY A    ++KL+ ++GK  Q   A  LF  M + G +P   V
Sbjct: 67  DKWLQCLEVFRWMQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSV 126

Query: 152 YTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           Y AL++A+     ++  L +A +    MKS+  C+P+V TY+I++++  +    + +  +
Sbjct: 127 YNALITAHLHSKDKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNAL 186

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             ++    +     TYN ++D YGK     EMES  S M +   C PDI T N +I +YG
Sbjct: 187 FKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRM-KIDQCKPDIITFNLLIDSYG 245

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              + EKME+ +        K  + T N +  +YG+A + DK  SV   M    + P+ +
Sbjct: 246 KKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFI 305

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T+  +I  +G    + K  + F  M   G +    T  ++++ Y   GL M+   +L   
Sbjct: 306 TFESLIMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENA 365

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +  V  ++  +  +  AY +A   E + +L   M +   +P+   F 
Sbjct: 366 RSIGVPPNSSTYKLLYRAYTKAKMKELVQKLLKHMDKDGIIPNKRFFV 413


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 188/375 (50%), Gaps = 3/375 (0%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E  ++  WQ +L++F  +++Q W +     +T ++ +LG+    E+ S +FE M + G+ 
Sbjct: 116 EFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVS 175

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            SV  YTAL+++YG++G  + +   +  MK      P + TY+ +I SC +    ++ + 
Sbjct: 176 RSVFSYTALINSYGRNGKYEVSLELLERMKK-ERVSPSILTYNTVINSCARGGLDWEGLL 234

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + AEM + GI+   VTYNT++         +E E  F  M E GG  PDI T   ++  
Sbjct: 235 GLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNE-GGVVPDITTYTYLVDT 293

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +G    ++K+ +   E    G   +I + N+L ++Y R G  +    V   MQ+    P 
Sbjct: 294 FGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPN 353

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TY+I++  +GK G  +++ E F +MK    +P++ TY +L+  + + G   +V ++  
Sbjct: 354 AETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFH 413

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            +   +V  +   +  +I A G+ G  +   ++ L M E+  +P +  +  +I+AY    
Sbjct: 414 DMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAA 473

Query: 446 MTEAAQNLENKMIAM 460
           M E A    N M  M
Sbjct: 474 MYEEALVTLNTMNEM 488



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  L +F  +R +   Q    T+  L+         ++A ++F  M   G+ P +  YT
Sbjct: 230 WEGLLGLFAEMRHEG-IQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYT 288

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            LV  +G+   LD+    + +M S  +  P++ +Y++L+++  +    +    +   M  
Sbjct: 289 YLVDTFGKLNRLDKVSELLKEMASTGNV-PEISSYNVLLEAYARIGNIEDATGVFRLMQE 347

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G   +A TY+ ++  YGK  +++E+   F  M  S    PD  T N++I  +G  G  +
Sbjct: 348 AGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSN-TEPDAATYNTLIDVFGEGGYFK 406

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           ++   +++     V+ +++T   L  + G+ G++D  + ++  M ++   P+   Y  VI
Sbjct: 407 EVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVI 466

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           E +G+A   E+       M   G KP   TY +L+  +++ GL  + ++IL ++ +  V 
Sbjct: 467 EAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVA 526

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +   FN +I  + Q G  E+  + ++ M++   VPD  T   ++  Y   G+ + +
Sbjct: 527 RERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDES 583



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 167/354 (47%), Gaps = 2/354 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+   GK  + ++ S L + M S G  P +  Y  L+ AY + G +++A      M
Sbjct: 286 TYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLM 345

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C P+  TYSIL+    K  R+D + ++  EM     E  A TYNT+ID +G+   
Sbjct: 346 QE-AGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGY 404

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  M E     P++ T   +I A G  G  +  +K     +  G+    +   
Sbjct: 405 FKEVVTLFHDMAEEN-VEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYT 463

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + ++YG+A MY++    ++ M +    PT+ TYN +I  F + G  ++ E    KM   
Sbjct: 464 GVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDF 523

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+     ++  ++  + + G   +      ++E S ++ D      ++S Y  AG V++ 
Sbjct: 524 GVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDES 583

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
            E F  +K    +P+ + +  M+  Y        A  L ++M+  + ++  ++I
Sbjct: 584 VEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVI 637



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 8/304 (2%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I   +   R  L+E
Sbjct: 104 KLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMI---SLLGREGLLE 160

Query: 206 K---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           K   I  EM   G+  S  +Y  +I+ YG+  K+E        M +     P I T N++
Sbjct: 161 KCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKE-RVSPSILTYNTV 219

Query: 263 ISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           I++    G + E +   + E    G++ DI T N L  +    G+ D+   V   M +  
Sbjct: 220 INSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGG 279

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P + TY  +++TFGK   ++K+ E  K+M   G  P   +Y  L+ AY++ G I    
Sbjct: 280 VVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDAT 339

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + R ++ +  + +   ++ ++  YG+ G  +++ ELFL MK  +  PD  T+ T+I  +
Sbjct: 340 GVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVF 399

Query: 442 NALG 445
              G
Sbjct: 400 GEGG 403



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +AK  E +  + S +VE G    D+ TL + +S+    G+I +        ++   K  +
Sbjct: 54  RAKPKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARC------LDVFKNKLSL 107

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFK 350
               ++ K + + G + +   +   MQ++ +  P    Y I+I   G+ G +EK  + F+
Sbjct: 108 NDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFE 167

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M   G+  +  +Y +L+++Y + G       +L +++   V      +N +I++  + G
Sbjct: 168 EMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGG 227

Query: 411 -DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            D E +  LF  M+     PD +T+ T++ A +  G+ + A+
Sbjct: 228 LDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAE 269


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 229/495 (46%), Gaps = 43/495 (8%)

Query: 1   MHLSNSIFTPPT---TATHLPKFYKEPVFRIQAIKRSP--GPIQELGIQKEAEKDLSKIL 55
           + LS+S  +P T    A+  P  + + +   ++  +SP  G ++ + +  E+++ L ++ 
Sbjct: 31  LKLSDSCTSPHTQFHIASPSPTQFFDEMPESESDNKSPKLGALESVEVDDESQERLGRLS 90

Query: 56  RTEFAIKNIEKKVSSKKYKN------------LWPKP---VLEALDEA------------ 88
           RT     N   K++ K+ K+            L  +P   V + LD++            
Sbjct: 91  RTRVKKMN---KLALKRAKDWRERVKFLTDRILGLRPDQFVADVLDDSKVQMTPTDFCFV 147

Query: 89  ---IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
              + Q+ WQ AL++F  L  + WY    +    ++ +LGK  Q   A  +F +     +
Sbjct: 148 VKWVGQENWQRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIF-IRAESTV 206

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DL 203
             +V VY A++  Y ++G  ++    ++ M+    C+PD+ +++ LI +  K      ++
Sbjct: 207 DNTVQVYNAMMGVYARTGRFNKVQGMLDLMRE-RGCEPDLVSFNTLINARLKAGAMTPNV 265

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++L E+   G+    +TYNT+I    +    EE    F  M E+  C PD++T N+MI
Sbjct: 266 AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDM-EAHYCQPDLWTYNAMI 324

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S YG  G   K E+ + E    G   D  T N L  ++ R G  DK++ + + M +  F 
Sbjct: 325 SVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFI 384

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
              +TYN +I  +GK G      + ++ MK  G  P++ITY  L+ +  KA  +++  ++
Sbjct: 385 RDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANV 444

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++ N  V      ++ +I  Y +AG   +  E F  M+     PD + ++ M+  +  
Sbjct: 445 MSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLR 504

Query: 444 LGMTEAAQNLENKMI 458
                 A  L  +M+
Sbjct: 505 FDEATKAMMLYREMV 519



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 3/290 (1%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LL EV  S GL+P +  Y  L+SA  +   L+EA    +DM++   C+PD++TY+ +I  
Sbjct: 269 LLNEVRRS-GLRPDIITYNTLISACSRESNLEEAVKVFDDMEA-HYCQPDLWTYNAMISV 326

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +       E++  E+   G    AVTYN+++  + +    ++++   + MV+ G    
Sbjct: 327 YGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR- 385

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D  T N++I  YG  G      + Y +  L G   D  T  +L  S G+A    +  +VM
Sbjct: 386 DEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVM 445

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M      PT+ TY+ +I  + +AG   + EE F  M+  G++P+ + Y  ++  + + 
Sbjct: 446 SEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRF 505

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
               K   + R++    +  D   +  ++   G+   VE +  +   M+E
Sbjct: 506 DEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEE 555



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 155/355 (43%), Gaps = 9/355 (2%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  + G LRQ+     R + +  L+         EQA  +F  M+ DG  P+V
Sbjct: 747  KLKLWQKAESLVGNLRQRCTNVDR-KVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTV 805

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI---EK 206
            D    L+ A    G L+E +    +   + D    +   SIL+     F R   I   +K
Sbjct: 806  DSINGLLQALIVDGRLEELYVVTQE---IQDMGFQISKSSILL-ILDAFARVSNIAEAKK 861

Query: 207  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            I   M   G   +   Y  +I    K K+  ++E+  + M E  G  PD+   NSM+  Y
Sbjct: 862  IYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEM-EEAGFRPDLSIWNSMLRLY 920

Query: 267  GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
                +  K  + Y      G++ D  T N L   Y R    ++  S+M  M++    P +
Sbjct: 921  TGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKL 980

Query: 327  VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
             TY  +I  FGK   +   EE F+++  +G K +   Y  ++  Y  +G   K + +L  
Sbjct: 981  DTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSM 1040

Query: 387  VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++++ V       + ++ +YG +G  ++  ++   +KE       + ++++I AY
Sbjct: 1041 MKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAY 1095



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 163/373 (43%), Gaps = 7/373 (1%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K+   ALK +   R+  W+   C  +  L+    + +   +AS +F  M  +G+KPS 
Sbjct: 640  KAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSK 699

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +Y ++V  Y + G  + A   I D+  +     D    SI +     + +  L +K  +
Sbjct: 700  SLYRSMVLMYCKMGFPETAHYLI-DLAEIEGMPFD--KISIDVAVIETYGKLKLWQKAES 756

Query: 210  EMSYLGIECSAV---TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
             +  L   C+ V    +N +I  Y  +  +E+  + F+ M+  G   P + ++N ++ A 
Sbjct: 757  LVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGP-SPTVDSINGLLQAL 815

Query: 267  GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
               G +E++     E   MG +    ++ ++  ++ R     + + +   M+   +FPT+
Sbjct: 816  IVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTM 875

Query: 327  VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
              Y I+I    K   +  +E    +M+  G +P+   + S++  Y+      K   I ++
Sbjct: 876  HLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQR 935

Query: 387  VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
            ++   +  D   +N +I  Y +    E+   L   M+     P   T+ ++I A+    +
Sbjct: 936  IKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQL 995

Query: 447  TEAAQNLENKMIA 459
               A+ L  ++++
Sbjct: 996  VVDAEELFEELLS 1008



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 131/303 (43%), Gaps = 2/303 (0%)

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            V+ AL+ AY  SG  ++A +  N M       P V + + L+++     R + +  +  E
Sbjct: 772  VWNALIQAYAASGCYEQARAVFNTMMR-DGPSPTVDSINGLLQALIVDGRLEELYVVTQE 830

Query: 211  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            +  +G + S  +   I+D + +     E +  +  M ++ G  P +     MI       
Sbjct: 831  IQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGM-KAAGYFPTMHLYRIMIGLLCKGK 889

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             +  +E    E    G + D+   N + + Y     + K   +   +++    P   TYN
Sbjct: 890  RVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYN 949

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  + +    E+      +M+  G++P   TY SL++A+ K  L++  + +  ++ + 
Sbjct: 950  TLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSK 1009

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               LD  F++ ++  Y  +G+  K  +L   MK+    P   T   ++ +Y + G  + A
Sbjct: 1010 GSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEA 1069

Query: 451  QNL 453
            + +
Sbjct: 1070 EKV 1072



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK-- 344
           V   +Q  N +   Y R G ++K++ ++D M++R   P +V++N +I    KAG +    
Sbjct: 206 VDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNV 265

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             E   +++  G++P+ ITY +L+SA S+   + +   +   +E      D   +N +IS
Sbjct: 266 AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS 325

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            YG+ G   K  +LF  ++ +   PD +T+ +++ A+   G  +  + + N+M+ M
Sbjct: 326 VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQM 381



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 158/378 (41%), Gaps = 39/378 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK  +  +A+ +   ML+ G+KP++  Y+AL+  Y ++G   EA  T + M
Sbjct: 424 TYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCM 483

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL---AEMSYLGIECSAVTYNTIIDGYGK 232
           +  S  +PD   YS+++     F RFD   K +    EM   GI      Y  ++   G+
Sbjct: 484 RR-SGIRPDQLAYSVMLDV---FLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGR 539

Query: 233 AKKFEEME--------------SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             K E+++               + ++++  G C+ D   +  +  +  +  + E +   
Sbjct: 540 ENKVEDIQRIIRDMEEVCGMNPQAIASILVKGECYEDAAGMLRLAISGSDEIDSENLLSI 599

Query: 279 YNEFNLMGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKR----------------F 321
            + ++  G +A+ +  L  L     ++       S++   + +                +
Sbjct: 600 LSSYSSSGRQAEALDLLQFLKGHVSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDW 659

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           F  +   Y  +I+   +     +  + F  M+  G+KP+   Y S+V  Y K G      
Sbjct: 660 FTGSCTMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAH 719

Query: 382 SILRQVENSDVILDTPFFN-CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            ++   E   +  D    +  +I  YG+    +K   L   +++R    D   +  +IQA
Sbjct: 720 YLIDLAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQA 779

Query: 441 YNALGMTEAAQNLENKMI 458
           Y A G  E A+ + N M+
Sbjct: 780 YAASGCYEQARAVFNTMM 797


>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
 gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 209/455 (45%), Gaps = 15/455 (3%)

Query: 3   LSNSIFTPPTTATHLPKFYKEPVFRIQAIK--RSPGPIQELGIQKEAEKDLSKILRTEFA 60
           L +S F  PT   HLP      V    + +  R PGP  +    K   ++L ++L   F 
Sbjct: 26  LPSSRFYKPTR-LHLPPRPSTTVVSCVSTRPRRKPGPKPD----KSEVEELVRVLMKNFG 80

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
            +       +K  K +  +      +E  K  KW   L++F  +++Q+WY A    ++KL
Sbjct: 81  GERPLISTLNKYVKVIRTEHCFRLFEELGKTDKWLQCLEVFRWMQKQRWYIADNGVYSKL 140

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMK 176
           + ++GK  Q   A  LF  M + G +P   VY AL++A+     +S  L +A    + MK
Sbjct: 141 ISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFDKMK 200

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +  CKP++ TY+IL+++  +    +    +  E++   +     T+N ++D YGK    
Sbjct: 201 GMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMI 260

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +EMES  S M +S  C PDI T N +I +YG     +KME+ +        K  + T N 
Sbjct: 261 KEMESVLSRM-KSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLPTFNS 319

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +  +YG+A + +K  +V   M    + P  +TY  +I  +G    I +  E F +M    
Sbjct: 320 MITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDEMMASK 379

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            +    T  +++  Y   GL M+ D +L +   +     +  +  +  AY +A   E + 
Sbjct: 380 KEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKLLYKAYTKADQKELLE 439

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +L   M     +P+   F   ++A  A G + A+Q
Sbjct: 440 KLLKLMDSDGILPNKRFF---LEALGAFGSSPASQ 471



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 23/308 (7%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV------------- 221
           MK+    +P + T +  +K     H F L E++     +L  +C  V             
Sbjct: 76  MKNFGGERPLISTLNKYVKVIRTEHCFRLFEELGKTDKWL--QCLEVFRWMQKQRWYIAD 133

Query: 222 --TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 278
              Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S +  K + K 
Sbjct: 134 NGVYSKLISVMGKKGQTRMAMWLFSEMRNSG-CRPDTSVYNALITAHLHSRDKSKALIKA 192

Query: 279 YNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              F+ M      K +I T NIL +++ +A   ++  ++   + +    P + T+N V++
Sbjct: 193 LGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMD 252

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +GK G I++ME    +MK    KP+ IT+  L+ +Y +     K++ + + +  S    
Sbjct: 253 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKP 312

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
             P FN +I+ YG+A   EK   +F  M +    P+ IT+ ++I  Y        A+ + 
Sbjct: 313 TLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIF 372

Query: 455 NKMIAMKE 462
           ++M+A K+
Sbjct: 373 DEMMASKK 380


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 193/435 (44%), Gaps = 71/435 (16%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +L++F  ++ Q+ Y+AR   +  ++ +  + ++ +QA  LF  M     KP V+ Y AL+
Sbjct: 70  SLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALM 129

Query: 157 SAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + +G++G    A    +DM ++     P   +Y+ LI +C    ++    +I   M+  G
Sbjct: 130 NVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNG 189

Query: 216 IECSAVTYNTIIDGY-----------------------------------GKAKKFEEME 240
           +    +TYN I+  +                                    K  +FE+  
Sbjct: 190 VGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAI 249

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           + F  M +  GC PD+ T N+++  Y   G I K ++ ++     G+   I T N L  +
Sbjct: 250 NLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGA 309

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y   GMY +   V+  + K  F P VV+Y+ ++  FGKAG+ EK +E F  MK R  KPN
Sbjct: 310 YASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPN 369

Query: 361 -----------------------------------SITYCSLVSAYSKAGLIMKVDSILR 385
                                               +T CSL +A ++A    KV  +  
Sbjct: 370 LVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFH 429

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           + +   + L+ P FN  I+AY +AG  ++   L   M+E++  P+ +TF  +I A  +LG
Sbjct: 430 EAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLG 489

Query: 446 MTEAAQNLENKMIAM 460
               A+ L +KM+ +
Sbjct: 490 DYREARTLYDKMVDL 504



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 181/392 (46%), Gaps = 13/392 (3%)

Query: 64  IEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM 123
           I KKV   +Y +     +L  L    K  +++ A+ +F  +R+    +    TF  L+ +
Sbjct: 221 ISKKVPLDRYSH---NIILNCL---TKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHV 274

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
              C Q  +A   F++M+ +G+ P++  +  L+ AY   G+  EA   +  +   +  +P
Sbjct: 275 YALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVK-AKFEP 333

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV +YS L+ +  K    +  +++   M     + + VT+N ++D Y  A K+E      
Sbjct: 334 DVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELL 393

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E+    P++ T+ S+ +A   +   EK+   ++E  +  +  ++   N    +Y  
Sbjct: 394 HDMAEA-RIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIE 452

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG +D+ +++++ M+++   P  VT+ ++I   G  G   +    + KM   G+ P ++ 
Sbjct: 453 AGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGI-PLTVE 511

Query: 364 YCS-LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            CS L++A++K G+  +  +I   +  +    +   +  ++ AY    D +   E    M
Sbjct: 512 PCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLACE---EM 568

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
                 PD+I F T+  A N    +E    +E
Sbjct: 569 VAAGITPDSIAFGTLFVALNKANRSEKVLQIE 600



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + AL+S   ++G L+ +    N MK+    +     Y+ +I    +  R D    +  EM
Sbjct: 54  FPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEM 113

Query: 212 SYLGIECSAVTYNTIIDGYGKAKK-------FEEM----------ESSFSAMVES----- 249
                +    TYN +++ +G+A +       F++M           SS++ ++ +     
Sbjct: 114 KVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSG 173

Query: 250 --------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                          G  PD+ T N ++SA+ + G       +Y+      V  D  + N
Sbjct: 174 QWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHN 233

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     + G ++   ++   M+K     P VVT+N ++  +   G I K +E F  M  
Sbjct: 234 IILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIG 293

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            GM P  +T+ +L+ AY+  G+  +   ++  +  +    D   ++ +++A+G+AG  EK
Sbjct: 294 EGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEK 353

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E+F  MK+R   P+ +TF  ++ AY + G  E A+ L + M
Sbjct: 354 AQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDM 396



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 153/357 (42%), Gaps = 55/357 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+   G      +A  L++ M+  G+  +V+  +AL++A+ + G+ +EA +  +DM
Sbjct: 477 TFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDM 536

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + CK +V TY+ L+     +  +D  +    EM   GI   ++ + T+     KA +
Sbjct: 537 RK-AGCKANVVTYTSLM---IAYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANR 592

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM-GVK------ 288
            E++     +    G    D+    ++++         +++ W     L  G+K      
Sbjct: 593 SEKVLQIEKSSRARGILFDDVAYTETLLAC-------SRLKDWETALFLYEGMKKRRLRL 645

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSV-MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
            +   +N+L+ + GR+G  D++  V ++  Q+  F PT+  YNI+I+++ +     K  E
Sbjct: 646 TNTMVINLLS-AVGRSGKLDRLHKVFLELQQQIGFVPTLQMYNILIDSYSRGLKWRKCLE 704

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
               +K   ++PN  TY  ++S  S             Q+E  +  L             
Sbjct: 705 VLGCIKKDILEPNWKTYEPILSCLS-------------QLELWETYL------------- 738

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
                E  GE+     E    PD       + AY +LGM E A   E ++  ++  +
Sbjct: 739 -----EIYGEVLAQGME----PDYNILKISVTAYTSLGMEEEASLTEARLQGLRRET 786


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 201/401 (50%), Gaps = 38/401 (9%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           WQ +L++F  +++Q W +     +T ++ +LG+    ++   +F+ M S G+  SV  YT
Sbjct: 121 WQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYT 180

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMS 212
           AL++AYG++G  + +   ++ MK+     P + TY+ +I +C +    ++ +  + AEM 
Sbjct: 181 ALINAYGRNGRYETSLELLDRMKN-DKISPSILTYNTVINACARGGLDWEGLLGLFAEMR 239

Query: 213 YLGIECSAVTYNTII--------------------DG---------------YGKAKKFE 237
           + GI+   VTYNT++                    DG               +GK ++ E
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLE 299

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           ++    S M  SGG  PDI + N ++ AY  SG+I++    +++    G   +  T ++L
Sbjct: 300 KVSDLLSEMA-SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
              +G++G YD +R +   M+     P   TYNI+IE FG+ G+ +++   F  M    +
Sbjct: 359 LNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENI 418

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           +P+  TY  ++ A  K GL      IL+ +  +D++  +  +  +I A+GQA   E+   
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALV 478

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            F TM E    P   T+ +++ ++   G+ + ++ + ++++
Sbjct: 479 AFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLV 519



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 43/345 (12%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 192
           LF  M  +G++P +  Y  L+SA    GL DEA   F T+ND   V    PD+ TYS L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIV----PDLTTYSHLV 289

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           ++  K  R + +  +L+EM+  G      +YN +++ Y K+   +E    F  M ++ GC
Sbjct: 290 ETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGC 348

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 302
            P+  T + +++ +G SG  + + + + E        D  T NIL + +G          
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408

Query: 303 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
                                    + G+++  R ++ +M      P+   Y  VIE FG
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           +A   E+    F  M   G  P+  TY SL+ ++++ GL+ + ++IL ++ +S +  +  
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRD 528

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            FN  I AY Q G  E+  + ++ M++  C PD  T   ++  Y+
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 162/315 (51%), Gaps = 3/315 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           KP+  +YT ++S  G+ GLLD+     ++M S    +  V++Y+ LI +  +  R++   
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRS-VFSYTALINAYGRNGRYETSL 196

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           ++L  M    I  S +TYNT+I+   +    +E +   F+ M    G  PDI T N+++S
Sbjct: 197 ELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLS 255

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A    G  ++ E  +   N  G+  D+ T + L +++G+    +K+  ++  M      P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLP 315

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            + +YN+++E + K+G I++    F +M+  G  PN+ TY  L++ + ++G    V  + 
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++++S+   D   +N +I  +G+ G  +++  LF  M E +  PD  T+  +I A    
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 445 GMTEAAQNLENKMIA 459
           G+ E A+ +   M A
Sbjct: 436 GLHEDARKILQYMTA 450



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 159/348 (45%), Gaps = 5/348 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK ++ E+ S L   M S G  P +  Y  L+ AY +SG + EA    + M
Sbjct: 284 TYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P+  TYS+L+    +  R+D + ++  EM     +  A TYN +I+ +G+   
Sbjct: 344 QAAG-CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  MVE     PD+ T   +I A G  G  E   K         +    +   
Sbjct: 403 FKEVVTLFHDMVEEN-IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYT 461

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + +++G+A +Y++     + M +    P++ TY+ ++ +F + G +++ E    ++   
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  T+ + + AY + G   +       +E S    D      ++S Y  A  V++ 
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            E F  MK    +P  + +  M+  Y   G TE   ++   +  M  N
Sbjct: 582 REQFEEMKASDILPSIMCYCMMLAVY---GKTERWDDVNELLEEMLSN 626



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 8/290 (2%)

Query: 102 GLLRQQQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           G+  Q Q   A C     T++ L+ + G+  + +    LF  M S    P    Y  L+ 
Sbjct: 338 GVFHQMQ--AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE 395

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            +G+ G   E  +  +DM    + +PD+ TY  +I +C K    +   KIL  M+   I 
Sbjct: 396 VFGEGGYFKEVVTLFHDMVE-ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            S+  Y  +I+ +G+A  +EE   +F+ M E G  +P I T +S++ ++   G +++ E 
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVG-SNPSIETYHSLLYSFARGGLVKESEA 513

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
             +     G+  +  T N   ++Y + G +++       M+K    P   T   V+  + 
Sbjct: 514 ILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            A  +++  E F++MK   + P+ + YC +++ Y K      V+ +L ++
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 107/227 (47%), Gaps = 8/227 (3%)

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + G  KAK  + +  + S  VE G    D+ +L + +S+    G+I +        ++  
Sbjct: 47  VAGKIKAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARC------LDIFK 100

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKM 345
            K  +    ++ K +   G + +   +  +MQ++ +  P    Y I+I   G+ G ++K 
Sbjct: 101 NKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKC 160

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E F +M  +G+  +  +Y +L++AY + G       +L +++N  +      +N +I+A
Sbjct: 161 LEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINA 220

Query: 406 YGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
             + G D E +  LF  M+     PD +T+ T++ A    G+ + A+
Sbjct: 221 CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 168/362 (46%), Gaps = 38/362 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIND 174
            +T L+    +  +   A  +F  M+  G++P++  Y  ++  Y +  +   E    +  
Sbjct: 156 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 215

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      PD YTY+ LI  C +   +    ++  EM   G E   VT+N+++D YGKA+
Sbjct: 216 MKE-HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKAR 274

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E       M E  GC P + T NS+IS+Y   G +E+      E  + G+K D+ T 
Sbjct: 275 RHDEAIEVIQEM-ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTY 333

Query: 295 -----------------------------------NILTKSYGRAGMYDKMRSVMDFMQK 319
                                              N L K +G  G + +M +V D  + 
Sbjct: 334 TTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRS 393

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             F P +VT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL   
Sbjct: 394 AGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDL 453

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              I +++  + +  D   +N ++SA  + G  E+  +LF  M+ER C PD  ++++++ 
Sbjct: 454 AMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLH 513

Query: 440 AY 441
           AY
Sbjct: 514 AY 515



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 168/349 (48%), Gaps = 5/349 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+ + GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL++A +   +M
Sbjct: 262 TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 321

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V   KPDV TY+ LI    +  + D       EM   G + +  TYN +I  +G   K
Sbjct: 322 E-VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGK 380

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM + F     S G  PDI T N++++ +G +G   ++   + E    G   +  T  
Sbjct: 381 FPEMMAVFDEF-RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 439

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  SY R G++D    +   M +   +P V TYN V+    + G  E+ E+ F +M+ R
Sbjct: 440 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER 499

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KP+  +Y SL+ AY+ A  + K+ ++   + +  +         ++    +  ++ + 
Sbjct: 500 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEA 559

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            + FL ++++ C  D      M+  Y   G     + +E  +  MKE++
Sbjct: 560 EKAFLELRQKRCSLDINVLNAMVSIY---GKNRMVRKVEKILSLMKESA 605



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 171/347 (49%), Gaps = 10/347 (2%)

Query: 116 TFTKLMVMLG-KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  L+ M G + K PE  ++ F+   S G  P +  +  L++ +GQ+GL  E      +
Sbjct: 367 TYNALIKMHGVRGKFPEMMAV-FDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 425

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      P+  TY  LI S ++   FDL  +I   M   GI     TYN ++    +  
Sbjct: 426 MKKAGYI-PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGG 484

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---I 291
           ++E+ E  F+ M E   C PD ++ +S++ AY N+  ++KM+   ++     ++     +
Sbjct: 485 RWEQAEKLFAEM-EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLV 543

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +TL ++        + +  ++ ++  QKR     +   N ++  +GK   + K+E+    
Sbjct: 544 KTLVLVNSKVN--NLAEAEKAFLELRQKRCSL-DINVLNAMVSIYGKNRMVRKVEKILSL 600

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK   +  ++ TY SL+  YS+ G   K ++IL ++++S V  D   +N +I AYG+ G 
Sbjct: 601 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 660

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +++   LF  MK     PD +T+   +++Y +  M E A  L   M+
Sbjct: 661 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 707



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 156/326 (47%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D A      M
Sbjct: 402 TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRM 461

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PDV TY+ ++ +  +  R++  EK+ AEM     +    +Y++++  Y  AK+
Sbjct: 462 ME-AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKR 520

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++M++  S  + S    P  + + +++       N+ + EK + E        DI  LN
Sbjct: 521 LDKMKA-LSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLN 579

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YG+  M  K+  ++  M++     +  TYN ++  + + G  EK E    ++K  
Sbjct: 580 AMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSS 639

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+  +Y +++ AY + G + +   +  +++ S +  D   +N  + +Y      E+ 
Sbjct: 640 GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEA 699

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            EL   M  + C P+  T+ ++++ Y
Sbjct: 700 IELVRYMVTQGCKPNERTYNSIVEGY 725



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +C   + A  +++ M+  G+ P V  Y A++SA  + G  ++A     +M
Sbjct: 437 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 496

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   DCKPD Y+YS L+ +     R D ++ +  ++    IE       T++    K   
Sbjct: 497 EE-RDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNN 555

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E +F  + +   C  DI  LN+M+S YG +  + K+EK  +      +     T N
Sbjct: 556 LAEAEKAFLELRQKR-CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYN 614

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y R G  +K  +++  ++     P   +YN VI  +G+ G +++    F +MK  
Sbjct: 615 SLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 674

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G+KP+ +TY   V +Y    +  +   ++R +       +   +N I+  Y + G
Sbjct: 675 GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 729



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           + LA++I+  + +   Y     T+  ++  L +  + EQA  LF  M     KP    Y+
Sbjct: 451 FDLAMQIYKRMMEAGIY-PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 509

Query: 154 ALVSAYGQSGLLDE-------------------------AFSTINDMKSVSD-------- 180
           +L+ AY  +  LD+                           S +N++             
Sbjct: 510 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 569

Query: 181 -CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C  D+   + ++    K      +EKIL+ M    I  SA TYN+++  Y +    E+ 
Sbjct: 570 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 629

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E+  +  ++S G  PD ++ N++I AYG  G +++  + ++E    G+K D+ T NI  K
Sbjct: 630 ENILTE-IKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVK 688

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
           SY    M+++   ++ +M  +   P   TYN ++E + + G +
Sbjct: 689 SYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKL 731



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVM---LGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           KI  L+++         T+  LM M   LG C++ E  ++L E+  S G++P    Y  +
Sbjct: 596 KILSLMKESA-INLSAATYNSLMHMYSRLGDCEKCE--NILTEIK-SSGVRPDRYSYNTV 651

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG+ G + EA    ++MK  S  KPDV TY+I +KS      F+   +++  M   G
Sbjct: 652 IYAYGRKGQMKEASRLFSEMK-CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQG 710

Query: 216 IECSAVTYNTIIDGYGKAKKFEE 238
            + +  TYN+I++GY +  K  +
Sbjct: 711 CKPNERTYNSIVEGYCRNGKLTD 733



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGE 417
           P++  Y +LVSA+S+AG      ++ R++ +S V      +N ++  Y + A   +++ E
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           L  +MKE    PD  T+ T+I       + + A  + ++M A
Sbjct: 212 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKA 253


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 168/362 (46%), Gaps = 38/362 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIND 174
            +T L+    +  +   A  +F  M+  G++P++  Y  ++  Y +  +   E    +  
Sbjct: 174 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 233

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      PD YTY+ LI  C +   +    ++  EM   G E   VT+N+++D YGKA+
Sbjct: 234 MKE-HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKAR 292

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E       M E  GC P + T NS+IS+Y   G +E+      E  + G+K D+ T 
Sbjct: 293 RHDEAIEVIQEM-ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTY 351

Query: 295 -----------------------------------NILTKSYGRAGMYDKMRSVMDFMQK 319
                                              N L K +G  G + +M +V D  + 
Sbjct: 352 TTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRS 411

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             F P +VT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL   
Sbjct: 412 AGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDL 471

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              I +++  + +  D   +N ++SA  + G  E+  +LF  M+ER C PD  ++++++ 
Sbjct: 472 AMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLH 531

Query: 440 AY 441
           AY
Sbjct: 532 AY 533



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 168/349 (48%), Gaps = 5/349 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+ + GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL++A +   +M
Sbjct: 280 TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 339

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V   KPDV TY+ LI    +  + D       EM   G + +  TYN +I  +G   K
Sbjct: 340 E-VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGK 398

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM + F     S G  PDI T N++++ +G +G   ++   + E    G   +  T  
Sbjct: 399 FPEMMAVFDEF-RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  SY R G++D    +   M +   +P V TYN V+    + G  E+ E+ F +M+ R
Sbjct: 458 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER 517

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KP+  +Y SL+ AY+ A  + K+ ++   + +  +         ++    +  ++ + 
Sbjct: 518 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEA 577

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            + FL ++++ C  D      M+  Y   G     + +E  +  MKE++
Sbjct: 578 EKAFLELRQKRCSLDINVLNAMVSIY---GKNRMVRKVEKILSLMKESA 623



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 171/347 (49%), Gaps = 10/347 (2%)

Query: 116 TFTKLMVMLG-KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  L+ M G + K PE  ++ F+   S G  P +  +  L++ +GQ+GL  E      +
Sbjct: 385 TYNALIKMHGVRGKFPEMMAV-FDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 443

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      P+  TY  LI S ++   FDL  +I   M   GI     TYN ++    +  
Sbjct: 444 MKKAGYI-PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGG 502

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---I 291
           ++E+ E  F+ M E   C PD ++ +S++ AY N+  ++KM+   ++     ++     +
Sbjct: 503 RWEQAEKLFAEM-EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLV 561

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +TL ++        + +  ++ ++  QKR     +   N ++  +GK   + K+E+    
Sbjct: 562 KTLVLVNSKVN--NLAEAEKAFLELRQKRCSL-DINVLNAMVSIYGKNRMVRKVEKILSL 618

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK   +  ++ TY SL+  YS+ G   K ++IL ++++S V  D   +N +I AYG+ G 
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +++   LF  MK     PD +T+   +++Y +  M E A  L   M+
Sbjct: 679 MKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 156/326 (47%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D A      M
Sbjct: 420 TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRM 479

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PDV TY+ ++ +  +  R++  EK+ AEM     +    +Y++++  Y  AK+
Sbjct: 480 ME-AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKR 538

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++M++  S  + S    P  + + +++       N+ + EK + E        DI  LN
Sbjct: 539 LDKMKA-LSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLN 597

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YG+  M  K+  ++  M++     +  TYN ++  + + G  EK E    ++K  
Sbjct: 598 AMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSS 657

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+  +Y +++ AY + G + +   +  +++ S +  D   +N  + +Y      E+ 
Sbjct: 658 GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEA 717

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            EL   M  + C P+  T+ ++++ Y
Sbjct: 718 IELVRYMVTQGCKPNERTYNSIVEGY 743



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +C   + A  +++ M+  G+ P V  Y A++SA  + G  ++A     +M
Sbjct: 455 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 514

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   DCKPD Y+YS L+ +     R D ++ +  ++    IE       T++    K   
Sbjct: 515 EE-RDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNN 573

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E +F  + +   C  DI  LN+M+S YG +  + K+EK  +      +     T N
Sbjct: 574 LAEAEKAFLELRQKR-CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYN 632

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y R G  +K  +++  ++     P   +YN VI  +G+ G +++    F +MK  
Sbjct: 633 SLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 692

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G+KP+ +TY   V +Y    +  +   ++R +       +   +N I+  Y + G
Sbjct: 693 GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 747



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           + LA++I+  + +   Y     T+  ++  L +  + EQA  LF  M     KP    Y+
Sbjct: 469 FDLAMQIYKRMMEAGIY-PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 154 ALVSAYGQSGLLDE-------------------------AFSTINDMKSVSD-------- 180
           +L+ AY  +  LD+                           S +N++             
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587

Query: 181 -CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C  D+   + ++    K      +EKIL+ M    I  SA TYN+++  Y +    E+ 
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E+  +  ++S G  PD ++ N++I AYG  G +++  + ++E    G+K D+ T NI  K
Sbjct: 648 ENILTE-IKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVK 706

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
           SY    M+++   ++ +M  +   P   TYN ++E + + G +
Sbjct: 707 SYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKL 749



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVM---LGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           KI  L+++         T+  LM M   LG C++ E  ++L E+  S G++P    Y  +
Sbjct: 614 KILSLMKESA-INLSAATYNSLMHMYSRLGDCEKCE--NILTEIK-SSGVRPDRYSYNTV 669

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG+ G + EA    ++MK  S  KPDV TY+I +KS      F+   +++  M   G
Sbjct: 670 IYAYGRKGQMKEASRLFSEMK-CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQG 728

Query: 216 IECSAVTYNTIIDGYGKAKKFEE 238
            + +  TYN+I++GY +  K  +
Sbjct: 729 CKPNERTYNSIVEGYCRNGKLTD 751



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGE 417
           P++  Y +LVSA+S+AG      ++ R++ +S V      +N ++  Y + A   +++ E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           L  +MKE    PD  T+ T+I       + + A  + ++M A
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKA 271


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 40/394 (10%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTI 172
              +T L+    +  +   A  +F  M+++G++P++  Y  ++  Y +  +   +  + +
Sbjct: 178 ASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALV 237

Query: 173 NDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           + MK+  D  P D YTY+ LI  C +   +    K+  EM   G E   VT+N+++D YG
Sbjct: 238 DSMKN--DGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYG 295

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY------------------------- 266
           KA+  +E       M E GGC P + T NS+IS+Y                         
Sbjct: 296 KARMHDEAIGVLKEM-ELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 267 ----------GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
                       +G I+     Y+E    G K ++ T N L K +G  G + +M +V D 
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDD 414

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           ++   F P VVT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL
Sbjct: 415 LRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 474

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             +   I +++  + +  D   +N ++SA  + G  E+  +LF  M+   C PD +++++
Sbjct: 475 FDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSS 534

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           ++ AY      +  + L   + A K  S   L++
Sbjct: 535 LLHAYANAKKLDKMKALSEDIYAEKIESHHGLVK 568



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 180/395 (45%), Gaps = 38/395 (9%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           ++ A K+F  +R   +   +  TF  L+ + GK +  ++A  + + M   G  PSV  Y 
Sbjct: 265 YKEAAKVFDEMRAAGFEPDKV-TFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYN 323

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           +L+S+Y + GLL EA     +M+ V   +PDV TY+ LI    +  + D       EM  
Sbjct: 324 SLISSYVKDGLLKEAAELKEEME-VKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLR 382

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G + +  TYN +I  +G   KF EM + F  +  S G  PD+ T N++++ +G +G   
Sbjct: 383 NGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDL-RSAGFVPDVVTWNTLLAVFGQNGLDS 441

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           ++   + E    G   +  T   L  SY R G++D+   +   M +   +P + TYN V+
Sbjct: 442 EVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVL 501

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA------------------- 374
               + G  E+ E+ F +M++   +P+ ++Y SL+ AY+ A                   
Sbjct: 502 SALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIE 561

Query: 375 ---GLIMKVDSILRQVEN-------------SDVILDTPFFNCIISAYGQAGDVEKMGEL 418
              GL+  +  +  +V N                 LD    N ++S YG+   V+K+ E+
Sbjct: 562 SHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEI 621

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              MK         T+ +++  Y+ LG  E  +N+
Sbjct: 622 LSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENI 656



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 160/331 (48%), Gaps = 12/331 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D++      M
Sbjct: 426 TWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRM 485

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +  R++  EK+ AEM  L      ++Y++++  Y  AKK
Sbjct: 486 IE-AGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKK 544

Query: 236 FEEM----ESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            ++M    E  ++  +ES  G    +  +NS ++      N+ + EK + E        D
Sbjct: 545 LDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVN------NLSETEKAFLELGRRRCSLD 598

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I  LN +   YG+  M  K+  ++  M+      +  TYN ++  + + G  EK E    
Sbjct: 599 INVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILT 658

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           ++K  G +P+  +Y +++ AY + G + +   +  ++++S +I D   +N  + +Y    
Sbjct: 659 EIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANS 718

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             E+  +L   M  R C P+  T+ +++Q Y
Sbjct: 719 MFEEAIDLVRYMVTRGCKPNERTYNSILQEY 749



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 175/378 (46%), Gaps = 37/378 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L +  + + A   ++ ML +G KP++  Y AL+  +G  G   E  +  +D+
Sbjct: 356 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDL 415

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S     PDV T++ L+    +      +  +  EM   G      TY ++I  Y +   
Sbjct: 416 RSAGFV-PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 474

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F++    +  M+E+G  +PDI T N+++SA    G  E+ EK + E   +  + D  + +
Sbjct: 475 FDQSMEIYKRMIEAG-IYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYS 533

Query: 296 ILTKSYGRAGMYDKMRSVMD---------------------------------FMQ--KR 320
            L  +Y  A   DKM+++ +                                 F++  +R
Sbjct: 534 SLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRR 593

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                +   N ++  +GK   ++K+EE    MK   +  ++ TY SL+  YS+ G   K 
Sbjct: 594 RCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKC 653

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ++IL ++++S    D   +N +I AYG+ G +++   LF  MK    +PD +T+   +++
Sbjct: 654 ENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKS 713

Query: 441 YNALGMTEAAQNLENKMI 458
           Y A  M E A +L   M+
Sbjct: 714 YVANSMFEEAIDLVRYMV 731


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 192/407 (47%), Gaps = 38/407 (9%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E  ++  WQ +L++F  +++Q W +     +T ++ +LG+    E+++ +FE M + G+ 
Sbjct: 115 EFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVP 174

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            SV  YTAL+++YG+ G  + +   +  MK      P + TY+ +I SC +    ++ + 
Sbjct: 175 RSVFSYTALINSYGRHGQYEVSLELLERMKK-EKVTPSILTYNTVINSCARGGLNWEGLL 233

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + AEM + GI+   +TYNT+++        +E E  F  M E GG  PDI T  +++  
Sbjct: 234 SLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNE-GGMVPDITTYRNLVET 292

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY------------------------ 301
           +G    +EK+ +   E    G   DI + N+L ++Y                        
Sbjct: 293 FGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPN 352

Query: 302 -----------GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
                      G  G YD +R +   M+     P V TYN++IE FG+ G+ +++   F 
Sbjct: 353 AVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFH 412

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M    ++PN  TY  L+ A  K GL      IL  ++   ++  T  +  +I AYGQA 
Sbjct: 413 DMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAA 472

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E+   +F TM E    P   T+ ++I  +   G+ + ++ +  KM
Sbjct: 473 SYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKM 519



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 2/346 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   GK  + E+ S L + M S G  P +  Y  L+ AY   G +  A      M
Sbjct: 285 TYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQM 344

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C P+  TYS+L+       R+D + ++  EM     E    TYN +I+ +G+   
Sbjct: 345 QE-ARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGY 403

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  MVE     P++ T   +I A G  G  E  +K     +  G+    +   
Sbjct: 404 FKEVVTLFHDMVEEN-VEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYT 462

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + ++YG+A  Y++   + + M +    PTV TYN +I  F + G  ++ E    KM   
Sbjct: 463 GVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGES 522

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  +  ++  ++  Y + G   +      ++E +    D   F  ++S Y  AG V++ 
Sbjct: 523 GVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDES 582

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            E F  ++    +P  + +  MI  Y      + A  + ++M+  K
Sbjct: 583 EEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNK 628



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I   +   R  L+E
Sbjct: 103 KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIII---SLLGREGLLE 159

Query: 206 K---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           K   I  EM   G+  S  +Y  +I+ YG+  ++E        M +     P I T N++
Sbjct: 160 KSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEK-VTPSILTYNTV 218

Query: 263 ISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           I++    G N E +   + E    G++ DI T N L  +    G+ D+   V   M +  
Sbjct: 219 INSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGG 278

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P + TY  ++ETFGK   +EK+ E  K+M+  G  P+  +Y  L+ AY+  G I    
Sbjct: 279 MVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAM 338

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + RQ++ +  + +   ++ +++ YG  G  + + ELFL MK  +  PD  T+  +I+ +
Sbjct: 339 GVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVF 398

Query: 442 NALGMTEAAQNLENKMI 458
              G  +    L + M+
Sbjct: 399 GEGGYFKEVVTLFHDMV 415



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 109/223 (48%), Gaps = 10/223 (4%)

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKAD 290
           +AK  E +  + S +VE G    D+ TL + +S+    G+I + +E + N+ +L      
Sbjct: 53  RAKTKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLEIFKNKLSL------ 106

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYF 349
                ++ K + + G + +   +  +MQ++ +  P    Y I+I   G+ G +EK  E F
Sbjct: 107 -NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIF 165

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M   G+  +  +Y +L+++Y + G       +L +++   V      +N +I++  + 
Sbjct: 166 EEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARG 225

Query: 410 G-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           G + E +  LF  M+     PD IT+ T++ A    G+ + A+
Sbjct: 226 GLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAE 268


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 18/456 (3%)

Query: 3   LSNSIFTPPTTATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIK 62
           LS    +  +TA  L K+  + V     ++  P  ++ELG + E E+          A++
Sbjct: 138 LSAPSMSGNSTALLLEKWSHQLV----GLEDFPYLLRELGNRGEWER----------ALQ 183

Query: 63  NIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMV 122
             E  V     ++ W K     +    +  K ++AL +F    Q+  +      ++ ++ 
Sbjct: 184 GYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDVFNRA-QKAGFGNNVYAYSAMVS 242

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDC 181
             G+  +  +A  +F+ M   G KP++  Y  ++ A G+ G+ L +A     +M+     
Sbjct: 243 AYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQK-EGV 301

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +PD  T++ LI  C++   ++  +++ AEM   GIE    TYNT+ID   K  + E   S
Sbjct: 302 EPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAAS 361

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
             S+M       P++ T ++MI  YG  G  E+    Y++    GV+ D  + N L   Y
Sbjct: 362 IMSSM-RLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIY 420

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G +D   +    M++      VVTYN +I+ +GK G  +     F KMK  G+ PN 
Sbjct: 421 AKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNV 480

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY +L+ AYSKAG+     SI  + + + +  D   ++ +I +  + G VE    L   
Sbjct: 481 LTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQE 540

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M +    P+ +T+ ++I AY   G  +  +  +  M
Sbjct: 541 MTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNM 576



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 154/337 (45%), Gaps = 45/337 (13%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+ + ++F  + Q++  +    T+  L+  + K  Q E A+ +   M    + P+V  Y+
Sbjct: 321 WEDSQRVFAEM-QRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYS 379

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++  YG+ G  +EA    +DMK  S  +PD  +Y+ LI    K  RFD       +M  
Sbjct: 380 TMIDGYGKLGCFEEAIGLYHDMKE-SGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMER 438

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G++   VTYN +ID YGK  K+++    F  M ++ G  P++ T +++I AY  +G  +
Sbjct: 439 VGLKADVVTYNALIDAYGKQGKYKDAAGLFDKM-KAEGLVPNVLTYSALIDAYSKAGMHQ 497

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                + EF   G+K D+   + L  S  + G+ +    ++  M +    P +VTYN +I
Sbjct: 498 DATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 557

Query: 334 ETFGKAGHIEKME------------------------------------------EYFKK 351
           + +G+ G ++ +E                                            F +
Sbjct: 558 DAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHE 617

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           M+  G+KPN +T+ ++++A S+   + +   +L Q+ 
Sbjct: 618 MQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMR 654



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SI+I +  +  + ++   +       G   +   Y+ ++  YG++ +  E    F AM +
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAM-K 261

Query: 249 SGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
             GC P++ T N++I A G  G +++K    + E    GV+ D  T N L     R  ++
Sbjct: 262 KAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLW 321

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +  + V   MQ+R     + TYN +I+   K G +E        M+ + + PN +TY ++
Sbjct: 322 EDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTM 381

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  Y K G   +   +   ++ S V  D   +N +I  Y + G  +        M+    
Sbjct: 382 IDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGL 441

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             D +T+  +I AY   G  + A  L +KM A
Sbjct: 442 KADVVTYNALIDAYGKQGKYKDAAGLFDKMKA 473


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 191/406 (47%), Gaps = 36/406 (8%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E  ++  WQ +L++F  +++Q W +      T ++ +LG+    ++   +F+ M S+G+ 
Sbjct: 107 EFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVV 166

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            +V  YTA+++AYG++G    +   +N MK      P + TY+ +I +C +    ++ + 
Sbjct: 167 RTVYSYTAIINAYGRNGQFHASLELLNGMKQ-ERVSPSILTYNTVINACARGGLDWEGLL 225

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------- 250
            + AEM + GI+   +TYNT++         +E E  F  M ESG               
Sbjct: 226 GLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF 285

Query: 251 -------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
                              G  PDI + N ++ AY   G+I++    + +    G  A+ 
Sbjct: 286 GKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANA 345

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T ++L   YG+ G YD +R +   M+     P   TYNI+I+ FG+ G+ +++   F  
Sbjct: 346 ATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHD 405

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M    ++PN  TY  L+ A  K GL      IL  +    V+  +  +  +I A+GQA  
Sbjct: 406 MAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAAL 465

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            E+   +F TM E    P   T+ ++I A+   G+ + A+ + ++M
Sbjct: 466 YEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRM 511



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 179/361 (49%), Gaps = 9/361 (2%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDGLKPSVD 150
           W+  L +F  +R +   Q    T+  L   LG C      ++A ++F  M   G+ P ++
Sbjct: 221 WEGLLGLFAEMRHEG-IQPDVITYNTL---LGACAHRGLGDEAEMVFRTMNESGIVPDIN 276

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y+ LV  +G+   L++    + +M+   +  PD+ +Y++L+++  +         +  +
Sbjct: 277 TYSYLVQTFGKLNRLEKVSELLREMECGGNL-PDITSYNVLLEAYAELGSIKEAMGVFRQ 335

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   +A TY+ +++ YGK  +++++   F  M  S    PD  T N +I  +G  G
Sbjct: 336 MQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSN-TDPDAGTYNILIQVFGEGG 394

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             +++   +++     V+ ++QT   L  + G+ G+Y+  + ++  M ++   P+   Y 
Sbjct: 395 YFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYT 454

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VIE FG+A   E+    F  M   G  P   TY SL+ A+++ GL  + ++IL ++  S
Sbjct: 455 GVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES 514

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  D   FN +I A+ Q G  E+  + ++ M++ +C P+ +T   ++  Y + G+ +  
Sbjct: 515 GLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEG 574

Query: 451 Q 451
           +
Sbjct: 575 E 575



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 2/347 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+   GK  + E+ S L   M   G  P +  Y  L+ AY + G + EA      
Sbjct: 276 NTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQ 335

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++ + C  +  TYS+L+    K  R+D +  +  EM     +  A TYN +I  +G+  
Sbjct: 336 MQA-AGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGG 394

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            F+E+ + F  M E     P++ T   +I A G  G  E  +K     N  GV    +  
Sbjct: 395 YFKEVVTLFHDMAEEN-VEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAY 453

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             + +++G+A +Y++   + + M +    PTV TYN +I  F + G  ++ E    +M  
Sbjct: 454 TGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNE 513

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+K +  ++  ++ A+ + G   +      ++E ++   +      ++S Y  AG V++
Sbjct: 514 SGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDE 573

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             E F  +K    +P  + +  M+  Y        A NL + MI M+
Sbjct: 574 GEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMR 620


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 165/308 (53%), Gaps = 2/308 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+T L+ + GK  +   A  LF  M+S   KP++  YTALV+A+ + GL ++A      
Sbjct: 261 ETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQ 320

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+     +PDVY Y+ L+++ ++        +I + M ++G E    +YN ++D YGKA 
Sbjct: 321 MQEAG-LEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAG 379

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             ++ E+ F  M +  G  P + +   ++SAY   G++ K E+  N+    G+K D   L
Sbjct: 380 FQDDAEAVFKDM-KRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVL 438

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +   YGR G + KM  V+  M+K  +   + TYNI+I  +G+AG IE+ME+ F+ +  
Sbjct: 439 NSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPS 498

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+KP+ +T+ S + AYSK  L +K   I  ++ +     D      +++A       E+
Sbjct: 499 KGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQ 558

Query: 415 MGELFLTM 422
           +  +  TM
Sbjct: 559 VTTVIRTM 566



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 159/349 (45%), Gaps = 35/349 (10%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++L    KP V  Y  L+ A+GQ  L  EA ST   +   + C P   TY++LIK+    
Sbjct: 145 ILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLE-ARCIPTEDTYALLIKAYCIS 203

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------ 246
              +  E + AEM   G+  SAV YN  I+G  K    ++ E  F  M            
Sbjct: 204 GLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETY 263

Query: 247 ----------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
                                 + S  C P+I T  ++++A+   G  EK E+ + +   
Sbjct: 264 TMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 323

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +GKAG  + 
Sbjct: 324 AGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDD 383

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            E  FK MK  G+ P   ++  L+SAYSK G + K + IL Q+  S + LDT   N +++
Sbjct: 384 AEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLN 443

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            YG+ G   KM E+   M++   V D  T+  +I  Y   G  E  ++L
Sbjct: 444 LYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDL 492



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 168/339 (49%), Gaps = 6/339 (1%)

Query: 108 QWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           Q  +ARC     T+  L+         E+A  +F  M + GL  S  VY A ++   + G
Sbjct: 180 QLLEARCIPTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGG 239

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
             D+A      MK  + CKP   TY++LI    K  +  +  K+  EM     + +  TY
Sbjct: 240 NSDKAEEIFKRMKKDA-CKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTY 298

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
             +++ + +    E+ E  F  M E+G   PD++  N+++ AY  +G      + ++   
Sbjct: 299 TALVNAFAREGLCEKAEEVFEQMQEAG-LEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQ 357

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
            MG + D  + NIL  +YG+AG  D   +V   M++    PT+ ++ +++  + K G + 
Sbjct: 358 HMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVN 417

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           K EE   +M   G+K ++    S+++ Y + G   K++ +LR +E    + D   +N +I
Sbjct: 418 KCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILI 477

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + YGQAG +E+M +LF  +  +   PD +T+ + I AY+
Sbjct: 478 NRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYS 516



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 108/236 (45%), Gaps = 2/236 (0%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           T   I+D   K  + E +  S   +  +     DIFT+   +       +I  + +W   
Sbjct: 88  TAQQILDYVEKGVESESIWGSLDMLPPTLDAWDDIFTVAVQLRMRKQWDSIISICRWI-- 145

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
                 K D+   N+L +++G+  +Y +  S    + +    PT  TY ++I+ +  +G 
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           +EK E  F +M++ G+  +++ Y + ++   K G   K + I ++++       T  +  
Sbjct: 206 LEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTM 265

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I+ YG+AG      +LF  M    C P+  T+  ++ A+   G+ E A+ +  +M
Sbjct: 266 LINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQM 321



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 37/239 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  LM    +   P  A+ +F +M   G +P    Y  LV AYG++G  D+A +   DM
Sbjct: 332 AYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDM 391

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV-------------- 221
           K V    P + ++ +L+ + +K    +  E+IL +M   G++                  
Sbjct: 392 KRVG-ITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQ 450

Query: 222 ---------------------TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                                TYN +I+ YG+A   E ME  F  ++ S G  PD+ T  
Sbjct: 451 FGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQ-LLPSKGLKPDVVTWT 509

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           S I AY       K  + + E    G   D  T  +L  +       +++ +V+  M K
Sbjct: 510 SRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHK 568



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y A   T+  L+   G+    E+   LF+++ S GLKP V  +T+ + AY +  L  +  
Sbjct: 466 YVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCL 525

Query: 170 STINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
               +M  + D C PD  T  +L+ +C+   + + +  ++  M
Sbjct: 526 EIFEEM--IDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTM 566


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 200/401 (49%), Gaps = 38/401 (9%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           WQ +L++F  +++Q W +     +T ++ +LG+    ++   +F+ M S G+  SV  YT
Sbjct: 121 WQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYT 180

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMS 212
           AL++AYG++G  + +   ++ MK+     P + TY+ +I +C +    ++ +  + AEM 
Sbjct: 181 ALINAYGRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMR 239

Query: 213 YLGIECSAVTYNTII--------------------DG---------------YGKAKKFE 237
           + GI+   VTYNT++                    DG               +GK ++ E
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLE 299

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           ++      M  SGG  PDI + N ++ AY  SG+I++    +++    G   +  T ++L
Sbjct: 300 KVCDLLGEMA-SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
              +G++G YD +R +   M+     P   TYNI+IE FG+ G+ +++   F  M    +
Sbjct: 359 LNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENI 418

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           +P+  TY  ++ A  K GL      IL+ +  +D++  +  +  +I A+GQA   E+   
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALV 478

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            F TM E    P   TF +++ ++   G+ + ++ + ++++
Sbjct: 479 AFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLV 519



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 43/345 (12%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 192
           LF  M  +G++P +  Y  L+SA    GL DEA   F T+ND   V    PD+ TYS L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIV----PDLTTYSHLV 289

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           ++  K  R + +  +L EM+  G      +YN +++ Y K+   +E    F  M ++ GC
Sbjct: 290 ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGC 348

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 302
            P+  T + +++ +G SG  + + + + E        D  T NIL + +G          
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408

Query: 303 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
                                    + G+++  R ++ +M      P+   Y  VIE FG
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           +A   E+    F  M   G  P+  T+ SL+ ++++ GL+ + ++IL ++ +S +  +  
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRD 528

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            FN  I AY Q G  E+  + ++ M++  C PD  T   ++  Y+
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 162/315 (51%), Gaps = 3/315 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           KP+  +YT ++S  G+ GLLD+     ++M S    +  V++Y+ LI +  +  R++   
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR-SVFSYTALINAYGRNGRYETSL 196

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           ++L  M    I  S +TYNT+I+   +    +E +   F+ M    G  PDI T N+++S
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLS 255

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A    G  ++ E  +   N  G+  D+ T + L +++G+    +K+  ++  M      P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP 315

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            + +YN+++E + K+G I++    F +M+  G  PN+ TY  L++ + ++G    V  + 
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++++S+   D   +N +I  +G+ G  +++  LF  M E +  PD  T+  +I A    
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 445 GMTEAAQNLENKMIA 459
           G+ E A+ +   M A
Sbjct: 436 GLHEDARKILQYMTA 450



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 158/348 (45%), Gaps = 5/348 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK ++ E+   L   M S G  P +  Y  L+ AY +SG + EA    + M
Sbjct: 284 TYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P+  TYS+L+    +  R+D + ++  EM     +  A TYN +I+ +G+   
Sbjct: 344 QAAG-CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  MVE     PD+ T   +I A G  G  E   K         +    +   
Sbjct: 403 FKEVVTLFHDMVEEN-IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYT 461

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + +++G+A +Y++     + M +    P++ T++ ++ +F + G +++ E    ++   
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  T+ + + AY + G   +       +E S    D      ++S Y  A  V++ 
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            E F  MK    +P  + +  M+  Y   G TE   ++   +  M  N
Sbjct: 582 REQFEEMKASDILPSIMCYCMMLAVY---GKTERWDDVNELLEEMLSN 626



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 102 GLLRQQQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           G+  Q Q   A C     T++ L+ + G+  + +    LF  M S    P    Y  L+ 
Sbjct: 338 GVFHQMQ--AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE 395

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            +G+ G   E  +  +DM    + +PD+ TY  +I +C K    +   KIL  M+   I 
Sbjct: 396 VFGEGGYFKEVVTLFHDMVE-ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            S+  Y  +I+ +G+A  +EE   +F+ M E G  +P I T +S++ ++   G +++ E 
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVG-SNPSIETFHSLLYSFARGGLVKESEA 513

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
             +     G+  +  T N   ++Y + G +++       M+K    P   T   V+  + 
Sbjct: 514 ILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
            A  +++  E F++MK   + P+ + YC +++ Y K      V+ +L ++ ++ V
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           KAK  + +  + S  VE G    D+ +L + +S+    G+I +        ++   K  +
Sbjct: 52  KAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARC------LDIFKNKLSL 105

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFK 350
               ++ K +   G + +   +  +MQ++ +  P    Y I+I   G+ G ++K  E F 
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  +G+  +  +Y +L++AY + G       +L +++N  +      +N +I+A  + G
Sbjct: 166 EMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGG 225

Query: 411 -DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            D E +  LF  M+     PD +T+ T++ A    G+ + A+
Sbjct: 226 LDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 40/394 (10%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTI 172
              +T L+  L +  +   A  +F  M+++G+ P++  Y  ++  Y +  +   E  + +
Sbjct: 176 ASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALV 235

Query: 173 NDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           + M+   D  P D YTY+ LI  C +   +    K+  EM   G E   VT N+++D YG
Sbjct: 236 DSMRK--DGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW------------- 278
           KA++++E       M E GGC P + T NS+IS+Y   G +E+  +              
Sbjct: 294 KARRYDEAIGVLKEM-EQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDV 352

Query: 279 ----------------------YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
                                 YNE    G K ++ T N L K +G  G + +M  V D 
Sbjct: 353 ITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDE 412

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           ++   F P VVT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL
Sbjct: 413 IRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 472

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             +   I +++  + +  D   +N ++SA  + G  E+  +LF  M+     PD +++++
Sbjct: 473 FDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSS 532

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           ++ AY      +  ++L   + A +  S   L++
Sbjct: 533 LLHAYANAKKLDKMKSLSEDIYAERIESHNGLVK 566



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 185/399 (46%), Gaps = 38/399 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  ++ A K+F  +R   +   +  T   L+ + GK ++ ++A  + + M   G  PSV
Sbjct: 259 RRALYKEAAKVFDEMRAAGFEPDKV-TLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSV 317

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +L+S+Y + GLL+EA     +M+ V   +PDV TY+ L+    +  + D       
Sbjct: 318 VTYNSLISSYVKDGLLEEATQLKEEME-VKGIEPDVITYTTLVSGLDRAGKIDAAIGTYN 376

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G + +  TYN +I  +G   KF EM   F   + S G  PD+ T N++++ +G +
Sbjct: 377 EMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDE-IRSAGFVPDVVTWNTLLAVFGQN 435

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G   ++   + E    G   +  T   L  SY R G++D+   +   M +    P + TY
Sbjct: 436 GLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTY 495

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA--------------- 374
           N V+    + G  E+ E+ F +M++   +P+ ++Y SL+ AY+ A               
Sbjct: 496 NAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYA 555

Query: 375 -------GLIMKVDSILRQVEN-SDV------------ILDTPFFNCIISAYGQAGDVEK 414
                  GL+  +  +  +V N SD              LD    N +IS YG+ G V+K
Sbjct: 556 ERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKK 615

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + E+   MKE        T+ +++  Y+ LG  E  +N+
Sbjct: 616 VEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENI 654



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 196/447 (43%), Gaps = 79/447 (17%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           LD   K +++  A+   G+L++ +  Q  C     T+  L+    K    E+A+ L E M
Sbjct: 289 LDVYGKARRYDEAI---GVLKEME--QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEM 343

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G++P V  YT LVS   ++G +D A  T N+M   + CKP++ TY+ LIK      +
Sbjct: 344 EVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLR-NGCKPNLCTYNALIKLHGVRGK 402

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---------- 250
           F  +  +  E+   G     VT+NT++  +G+     E+   F  M +SG          
Sbjct: 403 FPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVS 462

Query: 251 ------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
                                   G HPDI T N+++SA    G  E+ EK + E   + 
Sbjct: 463 LISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLD 522

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDF------------------------------ 316
            + D  + + L  +Y  A   DKM+S+ +                               
Sbjct: 523 SRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTE 582

Query: 317 -----MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                +++R     +   N +I  +GK G ++K+EE    MK   +  ++ TY SL+  Y
Sbjct: 583 KAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMY 642

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           S+ G   K ++IL ++++S    D   +N +I AYG+ G +++   LF  MK    VPD 
Sbjct: 643 SRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDI 702

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           +T+   +++Y A  M E A +L   M+
Sbjct: 703 VTYNIFVKSYVANSMFEEAIDLVRYMV 729



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D+A      M
Sbjct: 424 TWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRM 483

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +  R++  EK+ AEM  L      ++Y++++  Y  AKK
Sbjct: 484 IE-AGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKK 542

Query: 236 FEEM----ESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            ++M    E  ++  +ES  G    +  +NS ++      N+   EK + E        D
Sbjct: 543 LDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVN------NLSDTEKAFLELRRRRCSLD 596

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I  LN +   YG+ GM  K+  ++  M++     +  TYN ++  + + G  EK E    
Sbjct: 597 INVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILT 656

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           ++K    +P+  +Y +++ AY + G + +   +  +++ S ++ D   +N  + +Y    
Sbjct: 657 EIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANS 716

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             E+  +L   M    C P+  T+ T++Q Y + G
Sbjct: 717 MFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHG 751



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 43/315 (13%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMES 241
           PD   Y+ LI + ++  RF     +   M   G+  + VTYN ++  Y K A  ++E+ +
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
              +M    G   D +T N++IS        ++  K ++E    G + D  TLN L   Y
Sbjct: 234 LVDSM-RKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY 292

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+A  YD+   V+  M++    P+VVTYN +I ++ K G +E+  +  ++M+ +G++P+ 
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDV 352

Query: 362 ITYCSLVSAYSKAGLIMKVDS--------------------------------------I 383
           ITY +LVS   +AG   K+D+                                      +
Sbjct: 353 ITYTTLVSGLDRAG---KIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIV 409

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
             ++ ++  + D   +N +++ +GQ G   ++  +F  MK+   VP+  T+ ++I +Y+ 
Sbjct: 410 FDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSR 469

Query: 444 LGMTEAAQNLENKMI 458
            G+ + A  +  +MI
Sbjct: 470 CGLFDQAMEIYKRMI 484


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 167/342 (48%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK ++P++A  + + M S+  +PSV  Y +LVSAY + GLL++A      M
Sbjct: 287 TYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKM 346

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDVYTY+ L+       + +L  ++  EM  +G + +  T+N +I  YG   K
Sbjct: 347 VD-KGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGK 405

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FEEM   F   ++   C PDI T N++++ +G +G   ++   + E        +  T N
Sbjct: 406 FEEMVKVFKE-IKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFN 464

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +YGR G +D+  +    M +    P + TYN V+ T  + G  E+ E+   +MK  
Sbjct: 465 TLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDG 524

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G KPN +TY SL+ AY+    + +++++  ++ +  +         ++    +   + + 
Sbjct: 525 GCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVET 584

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              FL  ++R   PD  T   M+  Y    M   A  + N M
Sbjct: 585 ERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFM 626



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 174/352 (49%), Gaps = 4/352 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKPSV 149
            KK++ ALK+FG +++    +    T+  ++ + GK   P  +   L + M   GL P +
Sbjct: 192 NKKYRDALKVFGKMKEVGC-EPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDL 250

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+S      L +EA     ++K V+  +PD  TY+ L+    K  R     ++L 
Sbjct: 251 CTYNTLISCCRAGSLYEEALDLFEEIK-VAGFRPDAVTYNALLDVYGKSRRPKEAMEVLK 309

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M       S VTYN+++  Y +    E+       MV+ G   PD++T  +++S + N+
Sbjct: 310 QMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKG-IKPDVYTYTTLLSGFVNA 368

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G  E   + + E   +G K +I T N L K YG  G +++M  V   ++     P +VT+
Sbjct: 369 GKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTW 428

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++  FG+ G   ++   F++MK     P   T+ +L+SAY + G   +  +  +++  
Sbjct: 429 NTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLE 488

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           + V  D   +N +++   + G  E+  ++   MK+  C P+ +T+++++ AY
Sbjct: 489 AGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY 540



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 147/291 (50%), Gaps = 8/291 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A  LFE +   G +P    Y AL+  YG+S    EA   +  M+S S  +P V TY+ 
Sbjct: 267 EEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNS-FRPSVVTYNS 325

Query: 191 LIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           L+ +   + R  L+E  L    +M   GI+    TY T++ G+  A K E     F  M 
Sbjct: 326 LVSA---YVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM- 381

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
              GC P+I T N++I  YG+ G  E+M K + E  +     DI T N L   +G+ GM 
Sbjct: 382 RKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            ++  V + M++  F P   T+N +I  +G+ G  ++    +K+M   G+ P+  TY ++
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV 501

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           ++  ++ GL  + + +L ++++     +   ++ ++ AY    +VE+M  L
Sbjct: 502 LATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNAL 552



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 177/359 (49%), Gaps = 6/359 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +FE M      P  D +  L+SAYG+ G  D+A +    M
Sbjct: 427 TWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRM 486

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +   ++  EK+LAEM   G + + VTY++++  Y   ++
Sbjct: 487 LE-AGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGRE 545

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M ++ +  + SG        L +++        + + E+ + EF   G+  D+ T N
Sbjct: 546 VERM-NALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSN 604

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   +++FM +     ++ +YN ++  + +  +  K E+ F+++  +
Sbjct: 605 AMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDK 664

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+ I+Y  ++ AY +  ++ +   I+ +++    + D   +N  I+AY       + 
Sbjct: 665 GIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEA 724

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQ 470
            ++   M ++ C P++ T+ +++  Y  L + + A    QNL +    + E+   +L++
Sbjct: 725 IDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISEDEKSRLLE 783



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 166/371 (44%), Gaps = 5/371 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQA--RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
             K+ LAL +F  +R +    +         ++ +LGK  +  +A+ L   + +DG +  
Sbjct: 119 NNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVD 178

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKI 207
           V  YT+L++AY  +    +A      MK V  C+P + TY+ ++    K    +  I  +
Sbjct: 179 VYGYTSLITAYANNKKYRDALKVFGKMKEVG-CEPTLITYNAILNVYGKMGMPWAKIIAL 237

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           + +M   G+     TYNT+I        +EE    F   ++  G  PD  T N+++  YG
Sbjct: 238 VQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEE-IKVAGFRPDAVTYNALLDVYG 296

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            S   ++  +   +      +  + T N L  +Y R G+ +    +   M  +   P V 
Sbjct: 297 KSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVY 356

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  ++  F  AG  E   E F++M+  G KPN  T+ +L+  Y   G   ++  + +++
Sbjct: 357 TYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEI 416

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           +      D   +N +++ +GQ G   ++  +F  MK     P+  TF T+I AY   G  
Sbjct: 417 KVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSF 476

Query: 448 EAAQNLENKMI 458
           + A     +M+
Sbjct: 477 DQAMAAYKRML 487


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 5/371 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMV--MLGKCKQPEQASLLFEVMLSDGLKPS 148
            KK+ LAL  F    +Q+ YQ+        +V  MLGK  +   A+ LF  +  DG    
Sbjct: 148 HKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLD 207

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKI 207
           V  YT+L+SA+  SG   EA +    M+    CKP + TY++++    K    ++ I  +
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEE-EGCKPTLITYNVILNVFGKMGTPWNKITSL 266

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           + +M   GI   A TYNT+I    +    +E    F  M  +G  H D  T N+++  YG
Sbjct: 267 VEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSH-DKVTYNALLDVYG 325

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            S   ++  K  NE  L G    I T N L  +Y R GM D+   + + M ++   P V 
Sbjct: 326 KSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  ++  F +AG +E     F++M++ G KPN  T+ + +  Y   G  + +  I  ++
Sbjct: 386 TYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEI 445

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
               +  D   +N +++ +GQ G   ++  +F  MK    VP+  TF T+I AY+  G  
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505

Query: 448 EAAQNLENKMI 458
           E A  +  +M+
Sbjct: 506 EQAMTVYRRML 516



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 160/327 (48%), Gaps = 3/327 (0%)

Query: 116 TFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  ++ + GK   P  + + L E M SDG+ P    Y  L++   +  L  EA     +
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK+      D  TY+ L+    K HR     K+L EM   G   S VTYN++I  Y +  
Sbjct: 305 MKAAG-FSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDG 363

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +E     + M E G   PD+FT  +++S +  +G +E     + E    G K +I T 
Sbjct: 364 MLDEAMELKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTF 422

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N   K YG  G +  M  + D +      P +VT+N ++  FG+ G   ++   FK+MK 
Sbjct: 423 NAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P   T+ +L+SAYS+ G   +  ++ R++ ++ V  D   +N +++A  + G  E+
Sbjct: 483 AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
             ++   M++  C P+ +T+ +++ AY
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAY 569



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK  +P++A  +   M  +G  PS+  Y +L+SAY + G+LDEA    N M
Sbjct: 316 TYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM 375

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    +  + +    I  EM   G + +  T+N  I  YG   K
Sbjct: 376 AE-KGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F +M   F   +   G  PDI T N++++ +G +G   ++   + E    G   + +T N
Sbjct: 435 FVDMMKIFDE-INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFN 493

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G +++  +V   M      P + TYN V+    + G  E+ E+   +M+  
Sbjct: 494 TLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDG 553

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN +TYCSL+ AY+    I  + S+  +V +  +         ++    +   + + 
Sbjct: 554 RCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA 613

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              F  +KER   PD  T  +M+  Y    M   A  + + M
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYM 655



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 161/336 (47%), Gaps = 2/336 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  + +  L+SAY + G  ++A +    M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+
Sbjct: 516 LDAG-VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKE 574

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              M S  +  V SG   P    L +++        + + E+ ++E    G   DI TLN
Sbjct: 575 IGLMHS-LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   V+D+M++R F P++ TYN ++    ++    K EE  +++  +
Sbjct: 634 SMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+ I+Y +++ AY +   +     I  ++ +S ++ D   +N  I +Y      E+ 
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEA 753

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
             +   M +  C P+  T+ +++  Y  L   + A+
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 151/303 (49%), Gaps = 2/303 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    ++A+ +FE M + G       Y AL+  YG+S    EA   +N+M
Sbjct: 281 TYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEM 340

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + ++   P + TY+ LI +  +    D   ++  +M+  G +    TY T++ G+ +A K
Sbjct: 341 E-LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E   + F  M  + GC P+I T N+ I  YGN G    M K ++E N+ G+  DI T N
Sbjct: 400 VESAMNIFEEM-RNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWN 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +G+ GM  ++  V   M++  F P   T+N +I  + + G  E+    +++M   
Sbjct: 459 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDA 518

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+  TY ++++A ++ G+  + + +L ++E+     +   +  ++ AY    ++  M
Sbjct: 519 GVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLM 578

Query: 416 GEL 418
             L
Sbjct: 579 HSL 581



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 3/369 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  K + A+ IF  +R        C TF   + M G   +      +F+ +   GL P +
Sbjct: 396 RAGKVESAMNIFEEMRNAGCKPNIC-TFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDI 454

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L++ +GQ+G+  E      +MK      P+  T++ LI + ++   F+    +  
Sbjct: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYSRCGSFEQAMTVYR 513

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G+     TYNT++    +   +E+ E   + M E G C P+  T  S++ AY N 
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLHAYANG 572

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             I  M     E     ++     L  L     +  +  +       +++R F P + T 
Sbjct: 573 KEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTL 632

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++  +G+   + K  E    MK RG  P+  TY SL+  +S++    K + ILR++  
Sbjct: 633 NSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA 692

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  D   +N +I AY +   +     +F  M++   VPD IT+ T I +Y A  M E 
Sbjct: 693 KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEE 752

Query: 450 AQNLENKMI 458
           A  +   MI
Sbjct: 753 AIGVVRYMI 761



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 121/295 (41%), Gaps = 39/295 (13%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+    +C   EQA  ++  ML  G+ P +  Y  +++A  + G+ +++   + +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKA 233
           M+    CKP+  TY  L+ +        L+   LAE  Y G IE  AV   T++    K 
Sbjct: 550 MED-GRCKPNELTYCSLLHAYANGKEIGLMHS-LAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN------------------------- 268
               E E +FS + E G   PDI TLNSM+S YG                          
Sbjct: 608 DLLPEAERAFSELKERG-FSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMAT 666

Query: 269 ----------SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
                     S +  K E+   E    G+K DI + N +  +Y R         +   M+
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
                P V+TYN  I ++      E+     + M   G +PN  TY S+V  Y K
Sbjct: 727 DSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E   +  WQ +L++F  +++Q W +     +T ++ +LG+    E+ S +F+ M S G+ 
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            SV  YTAL++AYG++G  + +   +  MK      P++ TY+ +I +C +    ++ + 
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKR-ERVSPNILTYNTVINACARGDLDWEGLL 239

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + AEM + G++   VTYNT++         +E E  F  M+E GG  P+I T + ++  
Sbjct: 240 GLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIE-GGIVPEITTYSYIVET 298

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +G  G +EK+     E    G   DI + N+L +++ + G   +   V   MQ     P 
Sbjct: 299 FGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPN 358

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TY+I++  +GK G  + + E F +MK    +P++ TY  L+  + + G   +V ++  
Sbjct: 359 ASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFH 418

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + + ++  +   +  ++ A G+ G  E   ++   M  +  VP +  ++ +I+AY    
Sbjct: 419 DLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAA 478

Query: 446 MTEAA 450
           + + A
Sbjct: 479 LYDEA 483



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 171/354 (48%), Gaps = 2/354 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++   GK  + E+ ++L + M S+G  P +  Y  L+ A+ + G + EA      M
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++ + C P+  TYSIL+    K  R+D + ++  +M     E  A TYN +I  +G+   
Sbjct: 351 QA-AGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGY 409

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  +V+     P++ T   ++ A G  G  E  +K     N  G+    +  +
Sbjct: 410 FKEVVTLFHDLVDEN-IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L ++YG+A +YD+     + M +     T+ TYN +I TF + G  ++ E    +M+  
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N+ ++  ++  Y ++G   +      ++E     LD      ++  Y  AG V++ 
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
            E F+ +K    +P  + +  M+  Y   G  + A  L ++MI  + +S  ++I
Sbjct: 589 KEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVI 642



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 174/358 (48%), Gaps = 3/358 (0%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  L +F  +R +   Q    T+  L+         ++A ++F+ M+  G+ P +  Y+
Sbjct: 235 WEGLLGLFAEMRHEG-VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS 293

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            +V  +G+ G L++    + +M+S     PD+ +Y++LI++  K         +  +M  
Sbjct: 294 YIVETFGKLGKLEKVAMLLKEMES-EGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G   +A TY+ +++ YGK  +++++   F  M ES    PD  T N +I  +G  G  +
Sbjct: 353 AGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS-AEPDATTYNILIRVFGEGGYFK 411

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           ++   +++     +  +++T   L  + G+ G+++  + ++  M  +   P+   Y+ +I
Sbjct: 412 EVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLI 471

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           E +G+A   ++    F  M   G K    TY SL+  +++ GL  + ++IL ++    + 
Sbjct: 472 EAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGIS 531

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            +   F+ II  Y Q+G  E+  + F+ M++  C  D  T   ++  Y   G+ + ++
Sbjct: 532 RNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESK 589



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 107/209 (51%), Gaps = 1/209 (0%)

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+      +IS  G  G +EK  + ++E    GV   + +   L  +YGR G Y+   
Sbjct: 144 CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSL 203

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
            +++ M++    P ++TYN VI    +     E +   F +M+H G++P+ +TY +L+SA
Sbjct: 204 ELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSA 263

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            +  GL  + + + + +    ++ +   ++ I+  +G+ G +EK+  L   M+    +PD
Sbjct: 264 CAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIA 459
             ++  +I+A+  LG  + A ++  +M A
Sbjct: 324 ISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 186/372 (50%), Gaps = 3/372 (0%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E   +  WQ +L++F  +++Q W +     +T ++ +LG+    E+ S +F+ M S G+ 
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            SV  YTAL++AYG++G  + +   +  MK      P++ TY+ +I +C +    ++ + 
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKR-ERVSPNILTYNTVINACARGDLDWEGLL 239

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + AEM + G++   VTYNT++         +E E  F  M+E GG  P+I T + ++  
Sbjct: 240 GLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIE-GGIVPEITTYSYIVET 298

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +G  G +EK+     E    G   DI + N+L +++ + G   +   V   MQ     P 
Sbjct: 299 FGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPN 358

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TY+I++  +GK G  + + E F +MK    +P++ TY  L+  + + G   +V ++  
Sbjct: 359 ASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFH 418

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + + ++  +   +  ++ A G+ G  E   ++   M  +  VP +  ++ +I+AY    
Sbjct: 419 DLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAA 478

Query: 446 MTEAAQNLENKM 457
           + + A    N M
Sbjct: 479 LYDEALVAFNTM 490



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 171/354 (48%), Gaps = 2/354 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++   GK  + E+ ++L + M S+G  P +  Y  L+ A+ + G + EA      M
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++ + C P+  TYSIL+    K  R+D + ++  +M     E  A TYN +I  +G+   
Sbjct: 351 QA-AGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGY 409

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  +V+     P++ T   ++ A G  G  E  +K     N  G+    +  +
Sbjct: 410 FKEVVTLFHDLVDEN-IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYS 468

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L ++YG+A +YD+     + M +     T+ TYN +I TF + G  ++ E    +M+  
Sbjct: 469 GLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREY 528

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N+ ++  ++  Y ++G   +      ++E     LD      ++  Y  AG V++ 
Sbjct: 529 GISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDES 588

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
            E F+ +K    +P  + +  M+  Y   G  + A  L ++MI  + +S  ++I
Sbjct: 589 KEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVI 642



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 174/358 (48%), Gaps = 3/358 (0%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  L +F  +R +   Q    T+  L+         ++A ++F+ M+  G+ P +  Y+
Sbjct: 235 WEGLLGLFAEMRHEG-VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS 293

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            +V  +G+ G L++    + +M+S     PD+ +Y++LI++  K         +  +M  
Sbjct: 294 YIVETFGKLGKLEKVAMLLKEMES-EGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G   +A TY+ +++ YGK  +++++   F  M ES    PD  T N +I  +G  G  +
Sbjct: 353 AGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS-AEPDATTYNILIRVFGEGGYFK 411

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           ++   +++     +  +++T   L  + G+ G+++  + ++  M  +   P+   Y+ +I
Sbjct: 412 EVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLI 471

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           E +G+A   ++    F  M   G K    TY SL+  +++ GL  + ++IL ++    + 
Sbjct: 472 EAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGIS 531

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            +   F+ II  Y Q+G  E+  + F+ M++  C  D  T   ++  Y   G+ + ++
Sbjct: 532 RNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESK 589



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 107/209 (51%), Gaps = 1/209 (0%)

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+      +IS  G  G +EK  + ++E    GV   + +   L  +YGR G Y+   
Sbjct: 144 CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSL 203

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
            +++ M++    P ++TYN VI    +     E +   F +M+H G++P+ +TY +L+SA
Sbjct: 204 ELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSA 263

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            +  GL  + + + + +    ++ +   ++ I+  +G+ G +EK+  L   M+    +PD
Sbjct: 264 CAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIA 459
             ++  +I+A+  LG  + A ++  +M A
Sbjct: 324 ISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 186/396 (46%), Gaps = 38/396 (9%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E  ++  WQ AL++F  +++ QW +     +T ++ ++G+    ++AS LFE M  + ++
Sbjct: 47  EFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVE 106

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            +V  +TAL++AYG++G  + +   +  MK      P++ TY+ +I +C K    ++ + 
Sbjct: 107 WNVYSFTALINAYGRNGQHEASLHLLARMKR-EKVTPNLITYNTVINACAKGGLEWEGLL 165

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + A+M + GI+   +TYNT++         EE    F  M E+G   PD  T N+++  
Sbjct: 166 GLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAG-VVPDSITYNALVDI 224

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           YG +   E + +   E    G   D+   NIL ++YGRAG Y     +   MQ+    P 
Sbjct: 225 YGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPD 284

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-------------- 371
           VVT++ ++E +GK G  +++   F  MK RG +P+  TY +L+  +              
Sbjct: 285 VVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFW 344

Query: 372 ---------------------SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
                                 K GL      I R +  S V   T  F  +I+AYG A 
Sbjct: 345 DLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAA 404

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
              +    F +MKE  C PD  T+  +I A+   G+
Sbjct: 405 LYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGL 440



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 168/359 (46%), Gaps = 3/359 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W+  L +F  +R +   Q    T+  L+         E+A ++F  M   G+ P    Y
Sbjct: 160 EWEGLLGLFAQMRHEG-IQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITY 218

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            ALV  YGQ+   +     + +M+   +  PDV  Y+ILI++  +  ++    K+  +M 
Sbjct: 219 NALVDIYGQADRHEGVGELLREMEQAGNA-PDVVAYNILIEAYGRAGKYRAAAKMFKQMQ 277

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G     VT++T+++ YGK   ++E+   F+ M E G   PD+ T N++I  +G  G  
Sbjct: 278 EAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERG-TEPDVNTYNTLIQVFGQGGFF 336

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           ++    + +    GV+ D+ T   L  S G+ G++   + +   M + +  PT   +  +
Sbjct: 337 QESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGL 396

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I  +G A    +    F  MK  G KP+  TY +L+ A++  GL  +  S    + +  +
Sbjct: 397 ITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGI 456

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
             D   +N +I A+G+ G  +   E    M+E  C P+  T+  ++  Y   G+ + A+
Sbjct: 457 SADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAK 515



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 152/348 (43%), Gaps = 35/348 (10%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K +++ ++ +   + Q     +A      M+    CKP+ + Y+I+I    +    D   
Sbjct: 35  KLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKAS 94

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFE---------------------------- 237
           ++  +M    +E +  ++  +I+ YG+  + E                            
Sbjct: 95  ELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINAC 154

Query: 238 -----EMESSFS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
                E E      A +   G  PDI T N+++SA  + G +E+    +   N  GV  D
Sbjct: 155 AKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPD 214

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T N L   YG+A  ++ +  ++  M++    P VV YNI+IE +G+AG      + FK
Sbjct: 215 SITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFK 274

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M+  G  P+ +T+ +L+ AY K G   +V  +   ++      D   +N +I  +GQ G
Sbjct: 275 QMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGG 334

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ++   LF  + +    PD  T+A ++ +    G+ +AA+ +   M+
Sbjct: 335 FFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHML 382



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           +  K++ A K+F     +Q  +A C     TF+ L+   GK    ++  LLF  M   G 
Sbjct: 262 RAGKYRAAAKMF-----KQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGT 316

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V+ Y  L+  +GQ G   E+ +   D+      +PD+ TY+ L+ SC K       +
Sbjct: 317 EPDVNTYNTLIQVFGQGGFFQESINLFWDLLD-GGVEPDMSTYAGLLYSCGKGGLHKAAK 375

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           KI   M    +  +   +  +I  YG A  + E   +F++M ESG C PD+ T N++I A
Sbjct: 376 KIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESG-CKPDLETYNALIGA 434

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +   G   +    Y      G+ AD+ T N L +++GR G++D        M++    P 
Sbjct: 435 HAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPN 494

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
             TY  ++  +  AG  ++ +  F  ++  G  P+  +YC L+S  ++
Sbjct: 495 RHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCAR 542


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 181/374 (48%), Gaps = 5/374 (1%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           +++ Q+ W  AL+++  L  + WY    +  + ++ +LGK  Q   A  +F +       
Sbjct: 193 KSVGQESWHRALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVF-MRAEPSAG 251

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLI 204
            +V VY A++  Y + G  ++    ++ M+    CKPD+ +++ LI +  K      +L 
Sbjct: 252 NTVQVYNAMMGVYARRGRFNKVQELLDLMRE-RGCKPDLVSFNTLINARLKAGAMMPNLA 310

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L E+   G+    +TYNT+I    +A   EE    F  M E+  C PD++T N+MIS
Sbjct: 311 IELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDM-EAHHCQPDLWTYNAMIS 369

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            YG  G   K E+ +N+    G   D  + N L  ++ R G  +K++ + + M K  F  
Sbjct: 370 VYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGK 429

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             +TYN +I  +GK G  E   + ++ M+  G  P+++TY  L+ +  K   I +   ++
Sbjct: 430 DEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVM 489

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ N+ V      ++ +I  Y +AG   +  E F  M      PD++ ++ M+  +   
Sbjct: 490 SEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRF 549

Query: 445 GMTEAAQNLENKMI 458
              + A  L  +M+
Sbjct: 550 NEPKRAMTLYKEML 563



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 3/290 (1%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LL EV  S GL+P    Y  L+SA  ++  L+EA    +DM++   C+PD++TY+ +I  
Sbjct: 313 LLNEVRRS-GLRPDTITYNTLISACSRASNLEEAAKVFDDMEA-HHCQPDLWTYNAMISV 370

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +       E++  ++   G    AV+YN+++  + +    E+++  +  MV+ G    
Sbjct: 371 YGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIG-FGK 429

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D  T N+MI  YG  G  E   + Y +    G   D  T  +L  S G+     +   VM
Sbjct: 430 DEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVM 489

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M      PT+ TY+ +I  + KAG   + EE F  M   G++P+ + Y  ++  + + 
Sbjct: 490 SEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRF 549

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
               +  ++ +++ +  + LD   +  ++    +   VE +G +   M+E
Sbjct: 550 NEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEE 599



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 159/357 (44%), Gaps = 13/357 (3%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTK-----LMVMLGKCKQPEQASLLFEVMLSDG 144
            + K WQ A  + G LRQ      RC T  +     L+         E+A  +F  M+ DG
Sbjct: 790  RLKLWQKAESVAGNLRQ------RCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDG 843

Query: 145  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
              P+VD    L+ A    G LDE +  + +++ +   K    +  +++ +  +      +
Sbjct: 844  PSPTVDTINGLLQALIVDGRLDELYVVVQELQDMG-FKISKSSILLMLDAFARAGNIFEV 902

Query: 205  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +KI   M   G   +   Y  +     + K+  ++E+  S M E  G  PD+   NS++ 
Sbjct: 903  KKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEM-EEAGFKPDLSIWNSVLK 961

Query: 265  AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
             Y    +  K  + Y      G++ D  T N L   Y R    ++  S+M  M+     P
Sbjct: 962  MYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEP 1021

Query: 325  TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             + TY  ++ +FGK   +E+ EE F++++ +G K +   Y +++  Y  +G   K + + 
Sbjct: 1022 KLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLF 1081

Query: 385  RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              ++++ V       + ++ +YG +G  ++  ++   +KE       + ++++I AY
Sbjct: 1082 SMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAY 1138



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +A   +TI+   GKA +       F     S G    ++  N+M+  Y   G   K+++ 
Sbjct: 219 NARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQVY--NAMMGVYARRGRFNKVQEL 276

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAG--MYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
            +     G K D+ + N L  +  +AG  M +    +++ +++    P  +TYN +I   
Sbjct: 277 LDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISAC 336

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +A ++E+  + F  M+    +P+  TY +++S Y + GL  K + +   +E+     D 
Sbjct: 337 SRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDA 396

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N ++ A+ + G+VEK+ E++  M +     D +T+ TMI  Y   G  E A  L   
Sbjct: 397 VSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRD 456

Query: 457 MIAMKEN 463
           M +   N
Sbjct: 457 MQSSGRN 463



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            V+ AL+ AY  SG  + A +  N M       P V T + L+++     R D +  ++ E
Sbjct: 815  VWNALIEAYAASGCYERARAIFNTMMR-DGPSPTVDTINGLLQALIVDGRLDELYVVVQE 873

Query: 211  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            +  +G + S  +   ++D + +A    E++  +  M ++ G  P +     M        
Sbjct: 874  LQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGM-KAAGYFPTMHLYRVMARLLSRGK 932

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             +  +E   +E    G K D+   N + K Y     + K   V   +++    P   TYN
Sbjct: 933  QVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYN 992

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  + +    E+      +M+  G++P   TY SLV+++ K  L+ + + +  ++++ 
Sbjct: 993  TLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSK 1052

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               LD  F++ ++  Y  +G   K   LF  MK+    P   T   ++ +Y + G  + A
Sbjct: 1053 GCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEA 1112

Query: 451  QNL 453
            + +
Sbjct: 1113 EKV 1115



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 120/252 (47%), Gaps = 6/252 (2%)

Query: 123  MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-- 180
            +L + KQ      +   M   G KP + ++ +++  Y     +++   TI   + + +  
Sbjct: 927  LLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVA---IEDFRKTIQVYQRIKEDG 983

Query: 181  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             +PD  TY+ LI    + HR +    ++ EM   G+E    TY +++  +GK +  E+ E
Sbjct: 984  LEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAE 1043

Query: 241  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              F  + +S GC  D    ++M+  Y NSG+  K E+ ++     GV+  I T+++L  S
Sbjct: 1044 ELFEEL-QSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVS 1102

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
            YG +G   +   V+  +++     + + Y+ VI+ + + G      +   +MK  G++P+
Sbjct: 1103 YGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPD 1162

Query: 361  SITYCSLVSAYS 372
               +   + A S
Sbjct: 1163 HRIWTCFIRAAS 1174



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 118/290 (40%), Gaps = 37/290 (12%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           +  LI+ C +        ++ ++M + GI+ S   Y +++  Y K   F E         
Sbjct: 710 FESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMG-FPETAHHLIDFA 768

Query: 248 ESGGCHPDIFTLN-SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           ES G   +  +L  ++I AYG     +K E          +  D +  N L ++Y  +G 
Sbjct: 769 ESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGC 828

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYN-----------------------------------I 331
           Y++ R++ + M +    PTV T N                                   +
Sbjct: 829 YERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILL 888

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +++ F +AG+I ++++ +  MK  G  P    Y  +    S+   +  V+++L ++E + 
Sbjct: 889 MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAG 948

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              D   +N ++  Y    D  K  +++  +KE    PD  T+ T+I  Y
Sbjct: 949 FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMY 998



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 168/402 (41%), Gaps = 37/402 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ + +LAL+++  + Q         T+T L+  LGK  +  +A+ +   ML+ G+KP++
Sbjct: 443 KQGQNELALQLYRDM-QSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTL 501

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+AL+  Y ++G   EA  T + M   S  +PD   YS+++    +F+       +  
Sbjct: 502 KTYSALICGYAKAGKPVEAEETFDCMLR-SGIRPDHLAYSVMLDIHLRFNEPKRAMTLYK 560

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEE-------MES-------SFSAMVESGGCHPD 255
           EM + GI      Y  ++    K  K E+       ME        + S+++  G C+ +
Sbjct: 561 EMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISSILVKGECYDE 620

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT----KSYGRAGMYDKMR 311
              +  +  A  +   I++        +        + L++L      S   + M  +  
Sbjct: 621 AAKM--LRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITEAL 678

Query: 312 SVM-------DFMQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            VM       D   K +       F  +   +  +I+   +   I +  + F  M+  G+
Sbjct: 679 VVMLCKAQQLDAALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVFSDMRFCGI 738

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQAGDVEKMG 416
           K +   Y S+V  Y K G       ++   E+  ++L+    +  +I AYG+    +K  
Sbjct: 739 KASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAE 798

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +   +++R    D   +  +I+AY A G  E A+ + N M+
Sbjct: 799 SVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMM 840


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 168/338 (49%), Gaps = 4/338 (1%)

Query: 122 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           VM G CK    ++A  L  +M     KP+   YT ++ A+ + G+LD A S +N+MK  S
Sbjct: 184 VMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKS 243

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD++TYS LI +  K  +++ +  +  EM +L I  +  T+N++IDG  K  K E+ 
Sbjct: 244 -IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA 302

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E     M+E G   PD+ T N +I  YG  G +++  + ++      ++ DI + NIL  
Sbjct: 303 EEIMRYMIEKG-VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILIN 361

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y R    D+   V   + ++   P++VT N+++    + G  +  + +F +M   G  P
Sbjct: 362 GYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +  T+C+L+  Y K GL+ +  S   ++E      +   +  +I    + G ++K    F
Sbjct: 422 DLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATF 481

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +      PD IT+  MI  Y   G+ + A+++  KM
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 141/313 (45%), Gaps = 5/313 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-- 188
           + A  LF  M+     PSV  ++ L+ A      +    S ++  + +   +  V+ +  
Sbjct: 54  DDAFSLFRQMVRTKPLPSVASFSKLLKAMVH---MKHYSSVVSLFREIHKLRIPVHEFIL 110

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SI++ SC   HR DL   +LA     GI  + VT+ T+I G     K ++    F  +V 
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
              C P+     ++++     G+ +K             K + +T  I+  ++ + GM D
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLD 230

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              S+++ M+++   P + TY+ +I+   K    E +   F +M H  + PN  T+ S++
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               K G +   + I+R +    V  D   +N II  YG  G V++  E+F +M  +   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 429 PDNITFATMIQAY 441
           PD I++  +I  Y
Sbjct: 351 PDIISYNILINGY 363



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 142/303 (46%), Gaps = 3/303 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  +W+    +F  +     Y   C TF  ++  L K  + E A  +   M+  G
Sbjct: 255 IDALCKLSQWENVRTLFLEMIHLNIYPNVC-TFNSVIDGLCKEGKVEDAEEIMRYMIEKG 313

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P V  Y  ++  YG  G +D A    + M + S  +PD+ +Y+ILI    +  + D  
Sbjct: 314 VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKS-IEPDIISYNILINGYARQKKIDEA 372

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++  E+S  G++ S VT N ++ G  +  + +  ++ F  M+ +G   PD++T  +++ 
Sbjct: 373 MQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI-PDLYTHCTLLG 431

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            Y  +G +E+    +++        +IQ    +     + G  DK  +  + +      P
Sbjct: 432 GYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHP 491

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V+TY  +I  + + G +++ ++  +KM+  G   ++ TY  +V  + ++  + ++ + L
Sbjct: 492 DVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFL 551

Query: 385 RQV 387
            ++
Sbjct: 552 EEI 554



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 155/350 (44%), Gaps = 38/350 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           TFT L+  L    + + A  LF+ ++ + + +P+  +Y  +++   + G   +AF  +  
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+  S  KP+  TY+I+I +  K    D    +L EM    I     TY+T+ID   K  
Sbjct: 204 MEQGST-KPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLS 262

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++E + + F  M+     +P++ T NS+I      G +E  E+                 
Sbjct: 263 QWENVRTLFLEMIHLN-IYPNVCTFNSVIDGLCKEGKVEDAEE----------------- 304

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
                             +M +M ++   P V+TYN++I+ +G  G +++  E F  M +
Sbjct: 305 ------------------IMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           + ++P+ I+Y  L++ Y++   I +   + R++    +       N ++    + G  + 
Sbjct: 347 KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS 406

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
               F  M     +PD  T  T++  Y   G+ E A +  +K+   +E++
Sbjct: 407 AQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDT 456



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 105/256 (41%), Gaps = 35/256 (13%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           Q ++A  +F+ M++  ++P +  Y  L++ Y +   +DEA     ++ S    KP + T 
Sbjct: 333 QVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPSIVTC 391

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF----- 243
           ++L+    +  R    +    EM   G      T+ T++ GY K    EE  S F     
Sbjct: 392 NVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLER 451

Query: 244 --------------SAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEK 274
                           + ++G               G HPD+ T  +MIS Y   G +++
Sbjct: 452 RREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            +    +    G  AD +T N++ + + R+    +M++ ++ +  + F     T  ++++
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571

Query: 335 TFGKAGHIEKMEEYFK 350
              +   I +   + K
Sbjct: 572 IIAEDPSITRKMHWIK 587


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 176/359 (49%), Gaps = 34/359 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T L+       +  +A ++F+ +  +G +P++  Y  +++ YG+ G+     + + D  
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSM 282

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK- 235
             S   PD+YTY+ LI SC +   ++   ++  EM   G     VTYN ++D YGK+++ 
Sbjct: 283 KSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRP 342

Query: 236 ------FEEMESS------------FSAMVESG---------------GCHPDIFTLNSM 262
                  +EME+S             SA    G               G  PD+FT  ++
Sbjct: 343 REAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTL 402

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +S +  +G  +   K + E  + G + +I T N L K +G  G + +M  V + ++    
Sbjct: 403 LSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICEC 462

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P +VT+N ++  FG+ G   ++   FK+MK  G  P   T+ +L+SAYS+ G   +  +
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMA 522

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           I R++ ++ V  D   +N +++A  + G  E+  ++   MK+  C P+ +T+ +++ AY
Sbjct: 523 IYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY 581



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 162/340 (47%), Gaps = 2/340 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK ++P +A  + + M + G  PS+  Y +L+SAY + GLLDEA    + M
Sbjct: 328 TYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    K  + D   K+  EM   G + +  T+N +I  +G    
Sbjct: 388 VK-KGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN 446

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   ++   C PDI T N++++ +G +G   ++   + E    G   +  T N
Sbjct: 447 FVEMMKVFEE-IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 505

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G +D+  ++   M      P + TYN V+    + G  E+ E+   +MK  
Sbjct: 506 TLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDG 565

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN +TYCSL+ AY+    + ++ ++  ++ +  +         ++  Y ++  + + 
Sbjct: 566 RCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTET 625

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FL ++E+   PD  T   M+  Y    M      + N
Sbjct: 626 ERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILN 665



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 178/359 (49%), Gaps = 6/359 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D +  L+SAY + G  D+A +    M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+
Sbjct: 528 LD-AGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKE 586

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M S+ +  + SG   P    L +++  Y  S  + + E+ + E    G   DI TLN
Sbjct: 587 VERM-SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLN 645

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   +++F++   F P++ TYN ++  + +  H EK E+  +++  +
Sbjct: 646 AMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAK 705

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GMKP+ I++ +++ AY + G + +   I  ++++  +  D   +N  I++Y       + 
Sbjct: 706 GMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEA 765

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQ 470
            ++   M +  C P+  T+ ++I  +  L   + A     NL N   ++ ++  ++L++
Sbjct: 766 IDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEERRLLE 824



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 212/465 (45%), Gaps = 24/465 (5%)

Query: 12  TTATHLPKFYKEPVFRIQA-IKRSPGPIQ-----ELGIQKEAEKDLSKILRTEFAIKNIE 65
           +T  HLPK    P FR +  I RS  P +        +  + ++ L  +L  EF   +++
Sbjct: 70  STQPHLPK----PTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPEFDSSSLD 125

Query: 66  KKV-----SSKKYKNLWPKPV----LEALDEAIKQKKWQLALKIFGLLRQQQWYQA--RC 114
           + +     +S    N     V    L  +   +  KK +LAL +F  +R ++ + +    
Sbjct: 126 EILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASILSN 185

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
                ++ +LGK  +   A+ L   + +DG+   +  YT+L++AY  +G   EA      
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           ++    C+P + TY++++    K    +  I  ++  M   G+     TYNT+I    + 
Sbjct: 246 LEE-EGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRG 304

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             +EE    F  M ++ G  PD  T N+++  YG S    +  +   E    G    I T
Sbjct: 305 SLYEEAAEVFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  +Y R G+ D+   +   M K+   P V TY  ++  F K G  +   + F++M+
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G +PN  T+ +L+  +   G  +++  +  +++  + + D   +N +++ +GQ G   
Sbjct: 424 VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDS 483

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++  +F  MK    VP+  TF T+I AY+  G  + A  +  +M+
Sbjct: 484 EVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML 528


>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 215/462 (46%), Gaps = 22/462 (4%)

Query: 8   FTPPTTATHLPKFY--------KEPVFRIQAIKRSPGPIQELGI---QKEAEKDLSKILR 56
           FTP  +++ L + +        K    R+  I  S  P ++ G+   + EAE+ +  I+R
Sbjct: 13  FTPSYSSSQLSRLWLPLPSSIKKAVSTRVVCI--STRPSRKFGVKTDRSEAEELVRGIIR 70

Query: 57  TEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQT 116
             F+ K    K   K  + +  +      +E  K+ KW   L++F  +++Q+WY A    
Sbjct: 71  N-FSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGV 129

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTI 172
           ++KL+ ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +  S  
Sbjct: 130 YSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYF 189

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             MK +  CKP++ TY+IL ++  +  + D +  +  ++    +     TYN ++D YGK
Sbjct: 190 EKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGK 249

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               +EME   + M +S    PDI + N +I +YG     +KME+ +        +  + 
Sbjct: 250 NGNIKEMELMLARM-KSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLP 308

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N +  +YG+A + +K   V   M+   + P+ VT   +I  +G    + K  E F  M
Sbjct: 309 TFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGM 368

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            + G +    T  +++  Y   GL ++ D +     N  V  D+  +  +  AY +A   
Sbjct: 369 VNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKK 428

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           E + +L   M +   +P+   F   + A   +G ++  QNL+
Sbjct: 429 ELLEKLLKNMDKAGIIPNKRFF---LDALGTIGSSQENQNLQ 467



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 27/314 (8%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV------------- 221
           +++ SD +P + T    ++     H F L E++     +L  EC  V             
Sbjct: 69  IRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWL--ECLEVFRWMQKQRWYIAD 126

Query: 222 --TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 278
              Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S +  K + K 
Sbjct: 127 NGVYSKLISIMGKKGQIRMAMWLFSEMRNSG-CRPDTSVYNALITAHLHSKDKAKALVKV 185

Query: 279 YNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            + F  M      K +I T NILT+++ +A   D++ ++   + +      + TYN V++
Sbjct: 186 LSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMD 245

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +GK G+I++ME    +MK   +KP+ I++  L+ +Y K  L  K++ + + +  S    
Sbjct: 246 AYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERP 305

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
             P FN +I+ YG+A   EK  E+F  MK+    P  +T  ++I  Y        A+ + 
Sbjct: 306 TLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIF 365

Query: 455 NKMIAMKENSGKKL 468
           + M+    NSGK++
Sbjct: 366 DGMV----NSGKEV 375


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 176/359 (49%), Gaps = 34/359 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T L+       +  +A ++F+ +  +G +P++  Y  +++ YG+ G+     + + D  
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSM 282

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK- 235
             S   PD+YTY+ LI SC +   ++   ++  EM   G     VTYN ++D YGK+++ 
Sbjct: 283 KSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRP 342

Query: 236 ------FEEMESS------------FSAMVESG---------------GCHPDIFTLNSM 262
                  +EME+S             SA    G               G  PD+FT  ++
Sbjct: 343 REAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTL 402

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +S +  +G  +   K + E  + G + +I T N L K +G  G + +M  V + ++    
Sbjct: 403 LSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICEC 462

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P +VT+N ++  FG+ G   ++   FK+MK  G  P   T+ +L+SAYS+ G   +  +
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMA 522

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           I R++ ++ V  D   +N +++A  + G  E+  ++   MK+  C P+ +T+ +++ AY
Sbjct: 523 IYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY 581



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 162/340 (47%), Gaps = 2/340 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK ++P +A  + + M + G  PS+  Y +L+SAY + GLLDEA    + M
Sbjct: 328 TYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    K  + D   K+  EM   G + +  T+N +I  +G    
Sbjct: 388 VK-KGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN 446

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   ++   C PDI T N++++ +G +G   ++   + E    G   +  T N
Sbjct: 447 FVEMMKVFEE-IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 505

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G +D+  ++   M      P + TYN V+    + G  E+ E+   +MK  
Sbjct: 506 TLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDG 565

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN +TYCSL+ AY+    + ++ ++  ++ +  +         ++  Y ++  + + 
Sbjct: 566 RCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTET 625

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FL ++E+   PD  T   M+  Y    M      + N
Sbjct: 626 ERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILN 665



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 177/359 (49%), Gaps = 6/359 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D +  L+SAY + G  D+A +    M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+
Sbjct: 528 LDAG-VTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKE 586

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M S+ +  + SG   P    L +++  Y  S  + + E+ + E    G   DI TLN
Sbjct: 587 VERM-SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLN 645

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   +++F++   F P++ TYN ++  + +  H EK E+  +++  +
Sbjct: 646 AMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAK 705

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GMKP+ I++ +++ AY + G + +   I  ++++  +  D   +N  I++Y       + 
Sbjct: 706 GMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEA 765

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQ 470
            ++   M +  C P+  T+ ++I  +  L   + A     NL N   ++ ++  ++L++
Sbjct: 766 IDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSVTKDEERRLLE 824



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 212/465 (45%), Gaps = 24/465 (5%)

Query: 12  TTATHLPKFYKEPVFRIQA-IKRSPGPIQ-----ELGIQKEAEKDLSKILRTEFAIKNIE 65
           +T  HLPK    P FR +  I RS  P +        +  + ++ L  +L  EF   +++
Sbjct: 70  STQPHLPK----PTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPEFDSSSLD 125

Query: 66  KKV-----SSKKYKNLWPKPV----LEALDEAIKQKKWQLALKIFGLLRQQQWYQA--RC 114
           + +     +S    N     V    L  +   +  KK +LAL +F  +R ++ + +    
Sbjct: 126 EILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASILSN 185

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
                ++ +LGK  +   A+ L   + +DG+   +  YT+L++AY  +G   EA      
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           ++    C+P + TY++++    K    +  I  ++  M   G+     TYNT+I    + 
Sbjct: 246 LEE-EGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRG 304

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             +EE    F  M ++ G  PD  T N+++  YG S    +  +   E    G    I T
Sbjct: 305 SLYEEAAEVFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  +Y R G+ D+   +   M K+   P V TY  ++  F K G  +   + F++M+
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G +PN  T+ +L+  +   G  +++  +  +++  + + D   +N +++ +GQ G   
Sbjct: 424 VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDS 483

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++  +F  MK    VP+  TF T+I AY+  G  + A  +  +M+
Sbjct: 484 EVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML 528


>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 206/458 (44%), Gaps = 28/458 (6%)

Query: 10  PPT--TATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILR----TEFAIKN 63
           PP   + T  P F       ++A KRS      L  +++    +  ILR    ++ ++  
Sbjct: 13  PPCGFSPTRPPGFLPPRRLAVRAAKRS-----YLNAEQDVRPSVPSILRILNASQVSVVQ 67

Query: 64  IEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM 123
           I + +S       W    L  L+    Q KW L L++F  +++Q+WY      + KL+V+
Sbjct: 68  ILESLSPSMKLTDW----LSLLEGLANQSKWALTLEVFRWMQRQKWYNHDDGFYAKLIVI 123

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL----LDEAFSTINDMKSVS 179
            GK +    A  LF  +   G +P   +Y AL++AY  S       + A      MK   
Sbjct: 124 SGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHSRDKGRGFEAAMKLFEKMKQKP 183

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C+P++ TY+IL+++  +      +++   EM    I    VTYN +I  Y +A  + +M
Sbjct: 184 KCQPNLVTYNILLRASAQLGDVVQVDRFFKEMEAAKIYPDLVTYNGVIGAYAEAGDYVQM 243

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-----NLMGVKA----D 290
           E +   M       PD  T N++I AYG   +  KME+  + F     ++ G K+    D
Sbjct: 244 EMTLFVMRIQKHIKPDNVTSNTLIGAYGRGKDFVKMEQVVSLFTAVLKSMTGSKSKHRPD 303

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           ++T N+L  SY RA   + M      M++  F P   ++ I++  FG  G  EKM E F 
Sbjct: 304 LKTYNLLMSSYARAQDMENMLWSFSRMEEASFKPNFRSFEILMYGFGGVGDFEKMRECFH 363

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M    +KP + T  +++SAY K     + + +L++     +   T  +  I+ AY +  
Sbjct: 364 QMLEASIKPQTSTLNTMISAYCKHNFFEEAEELLKEALEWQIHPRTSSYLIILRAYARDN 423

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            +  M  L   M+     P + +F   ++ +     +E
Sbjct: 424 RLNDMERLIERMRIADVAPVSASFLKSLEHFGLANWSE 461


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 183/338 (54%), Gaps = 4/338 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +  + A++++  +++++  +   +T+T ++ + GK KQP  A  +F+ M S G
Sbjct: 56  LDGLLKARCAEKAVEVYQRMKRERC-RTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIG 114

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            K ++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++       
Sbjct: 115 CKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGFPQAA 173

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+A    E E+ F ++ +  G  P + +   +++
Sbjct: 174 SEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESL-KRQGMAPTMKSHMLLLA 232

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+  SGN+ + E+   + +  G+  D   LN +  +YGRAG  D M  ++  M++R    
Sbjct: 233 AHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGT-R 291

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V TYN+ +  +G+AG++E+ME  F  ++ RG+  + +T+ S + AY++     +   I 
Sbjct: 292 DVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIF 351

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            ++ ++    D      +++A      VE++  +  +M
Sbjct: 352 EEMVDAGCYPDAGTAKVLVAACSDERQVEQVTAIVRSM 389



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 169/335 (50%), Gaps = 7/335 (2%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+          +A  +   M   G+ PS  VY A +    ++   +
Sbjct: 7   EARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAE 66

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A      MK    C+ +  TY+++I    K  +     K+  EM  +G + +  TY  +
Sbjct: 67  KAVEVYQRMKR-ERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTAL 125

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  M ++G   PD++  N+++ AY  +G  +   + ++    MG
Sbjct: 126 VNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMG 184

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NIL  +YGRAG++ +  +V + ++++   PT+ ++ +++    ++G++ + E
Sbjct: 185 CEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCE 244

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E   ++   G+ P++I   ++++AY +AG +  ++ +L  +E      D   +N  ++AY
Sbjct: 245 EVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGT-RDVGTYNVAVNAY 303

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           G+AG +E+M   F +++ R    D +T+ + + AY
Sbjct: 304 GRAGYLERMEAAFASLERRGLAADVVTWTSRMGAY 338



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 7/328 (2%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++  +L     P+ D Y  L+ AY  +G L  A   I++M+      P    Y+  +   
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMRE-HGIPPSATVYNAYLDGL 59

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    +   ++   M       +  TY  +I+ YGK+K+       F  M +S GC  +
Sbjct: 60  LKARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEM-QSIGCKAN 118

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I T  ++++A+   G  EK E+ + E    G + D+   N L ++Y RAG       +  
Sbjct: 119 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFS 178

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ     P   +YNI+++ +G+AG   + E  F+ +K +GM P   ++  L++A++++G
Sbjct: 179 LMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSG 238

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + + + ++ Q+  S +  DT   N +++AYG+AG ++ M  L   M ER    D  T+ 
Sbjct: 239 NVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAM-ERRGTRDVGTYN 297

Query: 436 TMIQAYNALG----MTEAAQNLENKMIA 459
             + AY   G    M  A  +LE + +A
Sbjct: 298 VAVNAYGRAGYLERMEAAFASLERRGLA 325



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 153/317 (48%), Gaps = 3/317 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K +  E+A  +++ M  +  + + + YT +++ YG+S     A     +M+S+  CK 
Sbjct: 59  LLKARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIG-CKA 117

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A  F +  S  
Sbjct: 118 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG-FPQAASEI 176

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            ++++  GC PD  + N ++ AYG +G   + E  +      G+   +++  +L  ++ R
Sbjct: 177 FSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHAR 236

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G   +   VM  + K    P  +  N ++  +G+AG ++ ME     M+ RG + +  T
Sbjct: 237 SGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTR-DVGT 295

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y   V+AY +AG + ++++    +E   +  D   +   + AY +  +  +  E+F  M 
Sbjct: 296 YNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMV 355

Query: 424 ERHCVPDNITFATMIQA 440
           +  C PD  T   ++ A
Sbjct: 356 DAGCYPDAGTAKVLVAA 372



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 5/237 (2%)

Query: 84  ALDEAIKQKKW-QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           AL EA  +  + Q A +IF L++       R  ++  L+   G+     +A  +FE +  
Sbjct: 159 ALMEAYSRAGFPQAASEIFSLMQHMGCEPDR-ASYNILVDAYGRAGLHREAEAVFESLKR 217

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            G+ P++  +  L++A+ +SG +      +  +   S   PD    + ++ +  +  R D
Sbjct: 218 QGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHK-SGLAPDTIALNAMLNAYGRAGRLD 276

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            +E++LA M   G      TYN  ++ YG+A   E ME++F+++ E  G   D+ T  S 
Sbjct: 277 DMERLLAAMERRGTR-DVGTYNVAVNAYGRAGYLERMEAAFASL-ERRGLAADVVTWTSR 334

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + AY       +  + + E    G   D  T  +L  +       +++ +++  M K
Sbjct: 335 MGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQVTAIVRSMHK 391


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 191/403 (47%), Gaps = 43/403 (10%)

Query: 85  LDEAIKQKKWQLALKIFGL-LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           L E   + +W  A++ F   +R++Q    + +  + ++ +LG+  Q E A  +FE  L++
Sbjct: 155 LRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNE 214

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FH 199
           G   +V  ++AL+SAYG+SG  DEA      MKS S  KP++ TY+ +I +C K    F+
Sbjct: 215 GYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS-SGLKPNLVTYNAVIDACGKGGVDFN 273

Query: 200 R--------------------------------FDLIEKILAEMSYLGIECSAVTYNTII 227
           R                                ++    + +EM Y GIE    TYNT++
Sbjct: 274 RAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLL 333

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCH--PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           D   K     +M+ +F  M E    H  P++ T +++I  Y  +G +++    +NE    
Sbjct: 334 DAVCKGG---QMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFA 390

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            +  D  + N L   Y + G +++  +V   M+        VTYN ++  +GK G  E++
Sbjct: 391 SIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEV 450

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +  F++MK   + PN +TY +L+  YSK GL  +   + R+ + + +  D   ++ +I A
Sbjct: 451 KRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDA 510

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
             + G VE        M +    P+ +T+ ++I A+   G  E
Sbjct: 511 LCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAE 553



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 133/298 (44%), Gaps = 37/298 (12%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           S +I    +  + +L + +       G   +   ++ +I  YG++   +E    F  M +
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETM-K 247

Query: 249 SGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           S G  P++ T N++I A G  G +  +  + ++E    GV+ D  T N L    GR G++
Sbjct: 248 SSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLW 307

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +  R++   M  R     + TYN +++   K G ++   +   +M  + + PN +TY ++
Sbjct: 308 EAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTV 367

Query: 368 VSAYSKAGLI---------MKVDSI--------------------------LRQVENSDV 392
           +  Y+KAG +         MK  SI                           +++E+S +
Sbjct: 368 IDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGI 427

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             D   +N ++  YG+ G  E++  +F  MK     P+ +T++T+I  Y+  G+ + A
Sbjct: 428 KKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 213/456 (46%), Gaps = 15/456 (3%)

Query: 4   SNSIFTPPTTATHLPKFYKEP-VFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIK 62
           +  I + P+T  +      E    ++  ++  P  ++ELG + E E+          A++
Sbjct: 135 AQEILSAPSTPLNSTALLLEKWSHQLVGLEDFPYLLRELGNRGEWER----------ALQ 184

Query: 63  NIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMV 122
             E  V     ++ W K     +    +  K ++AL +F    Q+  +      ++ ++ 
Sbjct: 185 GYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIALDVFNRA-QKAGFGNNVYAYSAMVS 243

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDC 181
             G+  +  +A  +F+ M   G KP++  Y  ++ A G+ G+ L +A    ++M+     
Sbjct: 244 AYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQK-EGV 302

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +PD  T++ LI  C++   ++  +++ AEM   GIE    T+NT+ID   K  + E + +
Sbjct: 303 EPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQME-LAA 361

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           S    +      P++ T ++MI  YG  G  E+    Y++    GV+ D  + N L   Y
Sbjct: 362 SIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIY 421

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G +D        M++      VVTYN +I+ +GK G  +     F KMK  G+ PN 
Sbjct: 422 AKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNV 481

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY +L+ +YSKAG+   V ++  + + + +  D   ++ +I +  + G VE    L   
Sbjct: 482 LTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQE 541

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M +    P+ +T+ ++I AY   G  +  + ++  M
Sbjct: 542 MTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANM 577



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 157/409 (38%), Gaps = 81/409 (19%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+ + ++F  + Q++  +    TF  L+  + K  Q E A+ +   M    + P+V  Y+
Sbjct: 322 WEDSQRVFAEM-QRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYS 380

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++  YG+ G  +EA S  +DMK  S  +PD  +Y+ LI    K  RFD       +M  
Sbjct: 381 TMIDGYGKLGCFEEAISLYHDMKE-SGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMER 439

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G++   VTYN +ID YGK  K+++    F  M +  G  P++ T +++I +Y  +G  +
Sbjct: 440 VGLKADVVTYNALIDAYGKQGKYKDAACLFDKM-KGEGLVPNVLTYSALIDSYSKAGMHQ 498

Query: 274 KMEKWYNEFNLMGVKAD-----------------------------------IQTLNILT 298
            +   + EF   G+K D                                   I T N L 
Sbjct: 499 DVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 558

Query: 299 KSYGRAGMYDKMR-----------------------------------------SVMDFM 317
            +YGR G  DK+                                          SV   M
Sbjct: 559 DAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVFHEM 618

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           Q+    P VVT++ ++    +   +++     ++M+        I +  L+    +  + 
Sbjct: 619 QQFGLKPNVVTFSAILNACSRCASLQEASVLLEQMRFFDGWVYGIAHGLLMGLREQ--VW 676

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++   +  ++   D      F+N +       G  +   E+ +  K R 
Sbjct: 677 VEAQRLFDEISRMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKRRQ 725


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 186/388 (47%), Gaps = 39/388 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ K   A  I   LR+   +      +T L+       +   A L+F+ M  +G KP++
Sbjct: 194 KEGKVSAASSILNNLRKDG-FDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTL 252

Query: 150 DVYTALVSAYGQSGLLDEAFS-TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  +++ YG+ G+     S  ++ MKS S   PD YTY+ LI  C +   ++   ++ 
Sbjct: 253 ITYNVILNVYGKMGMPWSKISGLVHGMKS-SGVAPDDYTYNTLISCCRRGSLYEEAAQVF 311

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEME-SSFSA--------------- 245
            EM   G     VT+NT++D YGK+++        +EME S FS                
Sbjct: 312 EEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARD 371

Query: 246 ------------MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                       MVE G   PD+FT  +++S +  +G  E   + + E    G K +I T
Sbjct: 372 GLLREAMELKDQMVEKG-IKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICT 430

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L K +G  G + +M  V + ++     P +VT+N ++  FG+ G   ++   FK+MK
Sbjct: 431 FNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 490

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  P   T+ +L+SAYS+ G   +  ++ +++  + V  D   +N +++A  + G  E
Sbjct: 491 RAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWE 550

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAY 441
           +  ++F  MK+  C P+ +T+ +++ AY
Sbjct: 551 QSEKVFAEMKDGRCKPNELTYCSLLHAY 578



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 173/370 (46%), Gaps = 5/370 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQA--RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KK  +A+ +F  +R+++ +++   C     ++ MLGK  +   AS +   +  DG    V
Sbjct: 158 KKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDV 217

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKIL 208
             YT+L++AY  +G   +A      M+    CKP + TY++++    K    +  I  ++
Sbjct: 218 YAYTSLITAYASNGRYRDAVLVFKKMEE-EGCKPTLITYNVILNVYGKMGMPWSKISGLV 276

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   G+     TYNT+I    +   +EE    F  M  SG   PD  T N+++  YG 
Sbjct: 277 HGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSG-FSPDKVTFNTLLDVYGK 335

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           S   ++  +   E    G    I T N L  +Y R G+  +   + D M ++   P V T
Sbjct: 336 SRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFT 395

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  ++  F KAG  E     F +M+  G KPN  T+ +L+  +   G   ++  +  ++E
Sbjct: 396 YTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIE 455

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
             +   D   +N +++ +GQ G   ++  +F  MK    VP+  TF T+I AY+  G  +
Sbjct: 456 ICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQ 515

Query: 449 AAQNLENKMI 458
            A  +  +M+
Sbjct: 516 QAMAVYKRML 525



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 175/388 (45%), Gaps = 44/388 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+ + GK ++P++A  + + M   G  PS+  Y +L+SAY + GLL EA   + D 
Sbjct: 325 TFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAME-LKDQ 383

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    K    +   +I  EM   G + +  T+N +I  +G   +
Sbjct: 384 MVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGR 443

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   +E   C PDI T N++++ +G +G   ++   + E    G   +  T N
Sbjct: 444 FAEMMKVFEE-IEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 502

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G + +  +V   M +    P + +YN V+    + G  E+ E+ F +MK  
Sbjct: 503 TLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDG 562

Query: 356 GMKPNSITYCSLVSAYSK---------------AGLIMKVDSILRQV----ENSDVILDT 396
             KPN +TYCSL+ AY+                +GL   V  +L+ +       D++++T
Sbjct: 563 RCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMET 622

Query: 397 PF---------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                             N +I+ YG+   V K  E+   M E         F+  +  Y
Sbjct: 623 EHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNES-------GFSPSLATY 675

Query: 442 NALG-MTEAAQNLENKMIAMKENSGKKL 468
           N+L  M   ++N E     +KE   K L
Sbjct: 676 NSLMYMHSRSENFERSEEVLKEILAKGL 703



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 154/326 (47%), Gaps = 3/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D +  L+SAY + G   +A +    M
Sbjct: 465 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRM 524

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ +Y+ ++ +  +   ++  EK+ AEM     + + +TY +++  Y  +K+
Sbjct: 525 LE-AGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKE 583

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M +  +  + SG   P    L +++        + + E  + E    G   D+ TLN
Sbjct: 584 IERMHT-LAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLN 641

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   +++FM +  F P++ TYN ++    ++ + E+ EE  K++  +
Sbjct: 642 AMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAK 701

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+ I+Y +++ AY + G +     I   ++   ++ D   +N  +++Y      E  
Sbjct: 702 GLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDA 761

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             +   M +  C  +  T+ +++  Y
Sbjct: 762 IGVVRYMIKHGCKRNQNTYNSIVDGY 787



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 126/308 (40%), Gaps = 44/308 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    +C   +QA  +++ ML  G+ P +  Y A+++A  + GL +++     +M
Sbjct: 500 TFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEM 559

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTIIDGYGKAK 234
           K    CKP+  TY  L+ +       + +   LAE  Y G+ E   V   T++    K  
Sbjct: 560 KD-GRCKPNELTYCSLLHAYANSKEIERMH-TLAEEIYSGLTEPVPVLLKTLVLVNSKCD 617

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-------------------------- 268
              E E +F  + + G   PD+ TLN+MI+ YG                           
Sbjct: 618 LLMETEHAFEELKKKGS--PDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATY 675

Query: 269 ---------SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
                    S N E+ E+   E    G+K D+ + N +  +Y R G       +  +M+ 
Sbjct: 676 NSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKT 735

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AG 375
               P V+TYN  + ++      E      + M   G K N  TY S+V  Y K    A 
Sbjct: 736 YGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRAD 795

Query: 376 LIMKVDSI 383
            IM V S+
Sbjct: 796 AIMFVSSL 803



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 4/245 (1%)

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           + CS V    II   GK  K     S  + +    G   D++   S+I+AY ++G     
Sbjct: 180 LNCSVVA--VIITMLGKEGKVSAASSILNNL-RKDGFDLDVYAYTSLITAYASNGRYRDA 236

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              + +    G K  + T N++   YG+ GM + K+  ++  M+     P   TYN +I 
Sbjct: 237 VLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLIS 296

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              +    E+  + F++MK  G  P+ +T+ +L+  Y K+    +   +L+++E S    
Sbjct: 297 CCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSP 356

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
               +N +ISAY + G + +  EL   M E+   PD  T+ T++  +   GM E A  + 
Sbjct: 357 SIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIF 416

Query: 455 NKMIA 459
            +M A
Sbjct: 417 GEMRA 421


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 171/362 (47%), Gaps = 38/362 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIND 174
            +T L+    +  +   A  +F  M+  G++P++  Y  ++  Y +  +   E    ++ 
Sbjct: 187 AYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDS 246

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK     + D YTY+ LI  C +   +    ++  EM   G E   VT+N+++D YGKA+
Sbjct: 247 MKE-DGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKAR 305

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + EE       M E+ GC P + T NS+ISAY   G +E+  +   E    G+K D+ T 
Sbjct: 306 RHEEAIGVLKKM-ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTY 364

Query: 295 -----------------------------------NILTKSYGRAGMYDKMRSVMDFMQK 319
                                              N L K +G  G + +M  V D ++ 
Sbjct: 365 TTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRS 424

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P VVT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL  +
Sbjct: 425 AGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQ 484

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              I +++  + +  D   +N ++SA  + G   +  +LF  M++R C PD +++++++ 
Sbjct: 485 AMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLH 544

Query: 440 AY 441
           AY
Sbjct: 545 AY 546



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 170/337 (50%), Gaps = 6/337 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
            +A+ +F+ M + G +P    + +L+  YG++   +EA   +  M++ + C P V TY+ 
Sbjct: 273 REAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMEN-AGCTPSVVTYNS 331

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI +  K    +   ++  EM + G++   VTY T+I G  +  K +   +++S MV +G
Sbjct: 332 LISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNG 391

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C P++ T N++I  +G  G   +M   +++    G   D+ T N L   +G+ G+  ++
Sbjct: 392 -CSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEV 450

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V   M+K  + P   TY  +I ++ + G  ++  E +K+M   G+ P+  TY +++SA
Sbjct: 451 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 510

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            ++ G  ++ + +  ++E+ D   D   ++ ++ AY  A  ++KM  L   +  +   P 
Sbjct: 511 LARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPH 570

Query: 431 NITFATMI---QAYNALGMTEAA-QNLENKMIAMKEN 463
           N    T++      N+L  TE A Q L  +  ++  N
Sbjct: 571 NWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDIN 607



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 168/357 (47%), Gaps = 4/357 (1%)

Query: 100 IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           +F  LR    Y     T+  L+ + G+     + S +F+ M   G  P  D Y +L+S+Y
Sbjct: 418 VFDDLRSAG-YVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSY 476

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
            + GL D+A      M   +   PD+ TY+ ++ +  +  R+   EK+ AEM     +  
Sbjct: 477 SRCGLFDQAMEIYKRMIE-AGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPD 535

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            ++Y++++  Y  AKK ++M++  S  + +    P  + + +++       ++ + EK +
Sbjct: 536 ELSYSSLLHAYANAKKLDKMKA-LSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAF 594

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            E        DI  LN +   YG+  M  K+  V+  M++     +  TYN ++  + + 
Sbjct: 595 QELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRL 654

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  EK E    ++K  GM+P+  +Y +++ AY + G + +   +  +++ S V  D   +
Sbjct: 655 GDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTY 714

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 455
           N  I +Y      E+  +L   +  + C P+  T+ ++++ Y   G M EA   L N
Sbjct: 715 NIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSN 771



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 162/344 (47%), Gaps = 2/344 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ M G   +  +  ++F+ + S G  P V  +  L++ +GQ+GL  E      +M
Sbjct: 398 TYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEM 457

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P+  TY  LI S ++   FD   +I   M   GI     TYN ++    +  +
Sbjct: 458 KKAGYI-PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGR 516

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           + + E  F+ M E   C PD  + +S++ AY N+  ++KM+    +     ++     + 
Sbjct: 517 WVQAEKLFAEM-EDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVK 575

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +     +       +++R     +   N ++  +GK   ++K+EE    MK  
Sbjct: 576 TLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKEN 635

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +  ++ TY SL+  YS+ G   K ++IL ++++S +  D   +N +I AYG+ G +++ 
Sbjct: 636 SINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEA 695

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             LF  MK     PD +T+   I++Y A  M E A +L   ++A
Sbjct: 696 SRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVA 739



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 127/276 (46%), Gaps = 14/276 (5%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLL 136
           VL AL    +  +W  A K+F  +  +      C+    +++ L+      K+ ++   L
Sbjct: 507 VLSAL---ARGGRWVQAEKLFAEMEDRD-----CKPDELSYSSLLHAYANAKKLDKMKAL 558

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            E + +  ++P   +   LV    +   L E      +++    C  D+   + ++    
Sbjct: 559 SEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRR-RRCSLDINVLNAMVSIYG 617

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K      +E++L  M    I  SA TYN+++  Y +    E+ E+  +  ++S G  PD 
Sbjct: 618 KNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTE-IKSSGMRPDR 676

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           ++ N++I AYG  G +++  + ++E    GVK DI T NI  KSY    M+++   ++ +
Sbjct: 677 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRY 736

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           +  +   P   TYN ++E + + G + + + +   +
Sbjct: 737 LVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNL 772


>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
 gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 164/331 (49%), Gaps = 9/331 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  K  KW   L++F  +++Q+WY      ++KL+ ++GK  Q   A  LF  M + G
Sbjct: 104 FEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSG 163

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            +P   VY AL++A+     ++  L++     + MK +  C+P+V TY+IL+++  +  +
Sbjct: 164 CRPDASVYNALITAHLHTRDKAKALEKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGK 223

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D +  +  ++    +     T+N ++D YGK    +EME+  + M  S  C PDI T N
Sbjct: 224 VDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFN 282

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG     EKME+ +        K  + T N +  +YG+A M DK   V   M   
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDM 342

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCSLVSAYSKAGLIM 378
            + P+ +TY  +I  +G  G + +  E F+++    R +K +++   +++  Y + GL M
Sbjct: 343 NYMPSFITYECMIMMYGYCGSVSRAREIFEEVVDSERVLKASTLN--AMLEVYCRNGLYM 400

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           + D +        V  D   +  +  AY +A
Sbjct: 401 EADKLFHNASAFRVHPDASTYKFLYKAYTKA 431



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 39/249 (15%)

Query: 113 RCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           RCQ    T+  L+    +  + +Q + LF+ +    + P V  +  ++ AYG++G++ E 
Sbjct: 203 RCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEM 262

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
            + +  M+S ++CKPD+ T+++LI S  K   F+ +E+    +     + +  T+N++I 
Sbjct: 263 EAVLTRMRS-NECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMII 321

Query: 229 GYGKAKKFEEMESSFSAMVES----------------GGCHP-----DIF---------- 257
            YGKA+  ++ E  F  M +                 G C       +IF          
Sbjct: 322 NYGKARMIDKAEWVFKKMNDMNYMPSFITYECMIMMYGYCGSVSRAREIFEEVVDSERVL 381

Query: 258 ---TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
              TLN+M+  Y  +G   + +K ++  +   V  D  T   L K+Y +A M + ++ +M
Sbjct: 382 KASTLNAMLEVYCRNGLYMEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEHVQILM 441

Query: 315 DFMQKRFFF 323
             M+K   F
Sbjct: 442 KKMEKDGIF 450



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 61/271 (22%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M  +SD +P V T    +K     H F L E++                       GK+ 
Sbjct: 75  MSRISDKEPLVKTLDKYVKVVRCDHCFLLFEEL-----------------------GKSD 111

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW-YNEFNLMGVKADIQT 293
           K+ +    F  M +     PD    + +IS  G  G   +M  W ++E    G + D   
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQT-RMAMWLFSEMKNSGCRPDASV 170

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  ++                               + T  KA  +EK+  YF KMK
Sbjct: 171 YNALITAH-------------------------------LHTRDKAKALEKVRGYFDKMK 199

Query: 354 HRGM---KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
             GM   +PN +TY  L+ A++++G + +V+++ + ++ S V  D   FN ++ AYG+ G
Sbjct: 200 --GMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +++M  +   M+   C PD ITF  +I +Y
Sbjct: 258 MIKEMEAVLTRMRSNECKPDIITFNVLIDSY 288


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 179/371 (48%), Gaps = 5/371 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMV--MLGKCKQPEQASLLFEVMLSDGLKPS 148
            KK+ LAL+ F    +Q+ YQ+        ++  MLGK  +   A+ +F  +  DG    
Sbjct: 148 HKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLD 207

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKI 207
           V  YT+L+SA+  SG   EA +    M+    CKP + TY++++    K    ++ I  +
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEE-DGCKPTLITYNVILNVFGKMGTPWNKITSL 266

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           + +M   GI   A TYNT+I    +    +E    F  M  +G  + D  T N+++  YG
Sbjct: 267 VEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSY-DKVTYNALLDVYG 325

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            S   ++  K  NE  L G    I T N L  +Y R GM D+   + + M ++   P V 
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  ++  F +AG +E     F++M++ G KPN  T+ + +  Y   G   ++  I  ++
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
               +  D   +N +++ +GQ G   ++  +F  MK    VP+  TF T+I AY+  G  
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505

Query: 448 EAAQNLENKMI 458
           E A  +  +M+
Sbjct: 506 EQAMTVYRRML 516



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 160/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK  +P++A  +   M+ +G  PS+  Y +L+SAY + G+LDEA    N M
Sbjct: 316 TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM 375

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    +  + +    I  EM   G + +  T+N  I  YG   K
Sbjct: 376 AE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   +   G  PDI T N++++ +G +G   ++   + E    G   + +T N
Sbjct: 435 FTEMMKIFDE-INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFN 493

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G +++  +V   M      P + TYN V+    + G  E+ E+   +M+  
Sbjct: 494 TLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDG 553

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN +TYCSL+ AY+    I  + S+  +V +  +         ++    +   + + 
Sbjct: 554 RCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA 613

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              F  +KER   PD  T  +M+  Y    M   A  + + M
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYM 655



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 161/336 (47%), Gaps = 2/336 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  + +  L+SAY + G  ++A +    M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+
Sbjct: 516 LDAG-VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKE 574

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              M S  +  V SG   P    L +++        + + E+ ++E    G   DI TLN
Sbjct: 575 IGLMHS-LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   V+D+M++R F P++ TYN ++    ++    K EE  +++  +
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+ I+Y +++ AY +   +     I  ++ NS ++ D   +N  I +Y      E+ 
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEA 753

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
             +   M +  C P+  T+ +++  Y  L   + A+
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 3/369 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  K + A+ IF  +R        C TF   + M G   +  +   +F+ +   GL P +
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNIC-TFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDI 454

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L++ +GQ+G+  E      +MK      P+  T++ LI + ++   F+    +  
Sbjct: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYSRCGSFEQAMTVYR 513

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G+     TYNT++    +   +E+ E   + M E G C P+  T  S++ AY N 
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLHAYANG 572

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             I  M     E     ++     L  L     +  +  +       +++R F P + T 
Sbjct: 573 KEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTL 632

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++  +G+   + K       MK RG  P+  TY SL+  +S++    K + ILR++  
Sbjct: 633 NSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA 692

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  D   +N +I AY +   +     +F  M+    VPD IT+ T I +Y A  M E 
Sbjct: 693 KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEE 752

Query: 450 AQNLENKMI 458
           A  +   MI
Sbjct: 753 AIGVVRYMI 761



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 121/295 (41%), Gaps = 39/295 (13%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+    +C   EQA  ++  ML  G+ P +  Y  +++A  + G+ +++   + +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKA 233
           M+    CKP+  TY  L+ +        L+   LAE  Y G IE  AV   T++    K 
Sbjct: 550 MED-GRCKPNELTYCSLLHAYANGKEIGLMHS-LAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN------------------------- 268
               E E +FS + E G   PDI TLNSM+S YG                          
Sbjct: 608 DLLPEAERAFSELKERG-FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMAT 666

Query: 269 ----------SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
                     S +  K E+   E    G+K DI + N +  +Y R         +   M+
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
                P V+TYN  I ++      E+     + M   G +PN  TY S+V  Y K
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781


>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Brachypodium distachyon]
          Length = 519

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 176/361 (48%), Gaps = 5/361 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  +   W   L+IF  +++Q+WY A    ++KL+ ++GK  Q   A  LF  M + G
Sbjct: 83  FEELGRHDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGKKGQIRMAMWLFSQMRNSG 142

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            KP   VY +L+ A+     +S  L +A    + MK++  C+P++ TY+IL+++C +   
Sbjct: 143 CKPDTSVYNSLIGAHLHSRDKSKALAKALGYFDKMKTIERCQPNIVTYNILLRACARASD 202

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              +E +  ++    +     TYN +IDGYGK    +EMES    M +S  C PD+ T N
Sbjct: 203 AKQVEILFKDLDESLVTPDIYTYNGVIDGYGKNGMIKEMESVLVRM-KSKQCRPDVITFN 261

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG     +KME+ +        +    T N +  +YG+A + +K  SV++ M + 
Sbjct: 262 ILIDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLKEKAESVLEKMDEL 321

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P+ VT   +I  +     + K ++ F ++ +        +  +++ AY    L M+ 
Sbjct: 322 GFKPSYVTQECLIMMYAYCDCVSKAQQIFDELVNSQSTVPLSSLNAMLDAYCMNRLPMEA 381

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D +L       V+     +  +  AY +A D   + +L   M ++  VP+   F   ++A
Sbjct: 382 DRLLDAAIEKGVVPGASTYKLLYKAYTRANDKVLVQKLLGRMNKQGIVPNKKFFLDALEA 441

Query: 441 Y 441
           +
Sbjct: 442 F 442



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 281
           Y+ +I   GK  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 115 YSKLISVMGKKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKSKALAKALGY 173

Query: 282 FNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
           F+ M      + +I T NIL ++  RA    ++  +   + +    P + TYN VI+ +G
Sbjct: 174 FDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDGYG 233

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G I++ME    +MK +  +P+ IT+  L+ +Y +  +  K++ + + +  S      P
Sbjct: 234 KNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHP 293

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+ YG+A   EK   +   M E    P  +T   +I  Y        AQ + +++
Sbjct: 294 TFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMYAYCDCVSKAQQIFDEL 353

Query: 458 I 458
           +
Sbjct: 354 V 354


>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 203/449 (45%), Gaps = 54/449 (12%)

Query: 8   FTPPTTATHLPKFY--------KEPVFRIQAIKRSPGPIQELGI---QKEAEKDLSKILR 56
           FTP  +++ L + +        K    R+  I  S  P ++ G+   + EAE+ +  I+R
Sbjct: 13  FTPSYSSSQLSRLWLPLPSSIKKAVSTRVVCI--STRPSRKFGVKTDRSEAEELVRGIIR 70

Query: 57  TEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQT 116
             F+ K    K   K  + +  +      +E  K+ KW   L++F  +++Q+WY A    
Sbjct: 71  N-FSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGV 129

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTI 172
           ++KL+ ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +  S  
Sbjct: 130 YSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYF 189

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             MK +  CKP++                                   VTYN +   + +
Sbjct: 190 EKMKGMERCKPNI-----------------------------------VTYNILTRAFAQ 214

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A K +++ + F  + ES     DI+T N ++ AYG +GNI++ME          +K DI 
Sbjct: 215 AAKVDQVNTLFKDLDESV-VSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDII 273

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           + N+L  SYG+  ++DKM  V   + +    PT+ T+N +I  +GKA   EK EE F+KM
Sbjct: 274 SFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKM 333

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  G  P+ +T  SL+  Y     + K   I   + NS   +     N ++  Y   G  
Sbjct: 334 KDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLP 393

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   LF +       PD+ T+  + +AY
Sbjct: 394 LEADLLFESAGNMRVFPDSTTYKLLYKAY 422



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 27/314 (8%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV------------- 221
           +++ SD +P + T    ++     H F L E++     +L  EC  V             
Sbjct: 69  IRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWL--ECLEVFRWMQKQRWYIAD 126

Query: 222 --TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 278
              Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S +  K + K 
Sbjct: 127 NGVYSKLISIMGKKGQIRMAMWLFSEMRNSG-CRPDTSVYNALITAHLHSKDKAKALVKV 185

Query: 279 YNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            + F  M      K +I T NILT+++ +A   D++ ++   + +      + TYN V++
Sbjct: 186 LSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMD 245

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +GK G+I++ME    +MK   +KP+ I++  L+ +Y K  L  K++ + + +  S    
Sbjct: 246 AYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERP 305

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
             P FN +I+ YG+A   EK  E+F  MK+    P  +T  ++I  Y        A+ + 
Sbjct: 306 TLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIF 365

Query: 455 NKMIAMKENSGKKL 468
           + M+    NSGK++
Sbjct: 366 DGMV----NSGKEV 375


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 177/372 (47%), Gaps = 5/372 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           + Q  WQ AL+++  L  + WY    +    ++ +LGK  Q   A  +F          +
Sbjct: 195 VGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIF-ARAEAAXGNT 253

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIEK 206
           V VY A++  Y ++G   +    ++ M+S   C+PD+ +++ LI +  K      +L  +
Sbjct: 254 VQVYNAMMGVYARTGRFTKVQELLDLMRS-RGCEPDLVSFNTLINARLKSGTMVTNLAIE 312

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L E+   GI+   +TYNT+I    +    EE    ++ MV +  C PD++T N+MIS Y
Sbjct: 313 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMV-AHRCQPDLWTYNAMISVY 371

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G  G   +  + + +    G   D  T N L  ++ R G  DK++ + + M K  F    
Sbjct: 372 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 431

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TYN +I  +GK G  +   + +  MK  G  P+++TY  L+ +  KA +I +   ++ +
Sbjct: 432 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 491

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + N+ V      F+ +I  Y +AG   +  E F  M      PD++ ++ M+        
Sbjct: 492 MLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 551

Query: 447 TEAAQNLENKMI 458
           +  A  L  +M+
Sbjct: 552 SGKAMKLYQEMV 563



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 160/386 (41%), Gaps = 38/386 (9%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  + G LRQ+     R + +  L+         E+A  +F  M+ DG  P+V
Sbjct: 791  KLKLWQKAESLVGSLRQKCTMVDR-KVWNALIHAYAASGCYERARAIFNTMMRDGPSPTV 849

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            D    L+ A    G LDE +  I +++ +   K    + ++++ +         ++KI  
Sbjct: 850  DSVNGLMQALIVDGRLDELYVVIQELQDMG-FKISKSSITLMLDAFAHAGNIFEVKKIYQ 908

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   +   Y  +I    K K+  ++E+  S M E     PD+   NS++  Y   
Sbjct: 909  GMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM-EVAXFKPDLSIWNSVLKLYTGI 967

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
            G+ +K  + Y      G+K D  T N L   Y R    ++  S+M  M++    P + TY
Sbjct: 968  GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTY 1027

Query: 330  NIVIETFGKAGHIEKMEEYFKK-----------------------------------MKH 354
              +I  FGK   +E+ EE F+                                    MK 
Sbjct: 1028 KSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKE 1087

Query: 355  RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             G++P   T   L+ +YS +G   + + +L  ++   + L T  ++ +I AY + GD   
Sbjct: 1088 AGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNV 1147

Query: 415  MGELFLTMKERHCVPDNITFATMIQA 440
              +  + MK+    PD+  +   ++A
Sbjct: 1148 AIQKLMEMKKDGLEPDHRIWTCFVRA 1173



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 136/307 (44%), Gaps = 2/307 (0%)

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            V+ AL+ AY  SG  + A +  N M       P V + + L+++     R D +  ++ E
Sbjct: 816  VWNALIHAYAASGCYERARAIFNTMMR-DGPSPTVDSVNGLMQALIVDGRLDELYVVIQE 874

Query: 211  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            +  +G + S  +   ++D +  A    E++  +  M ++ G  P +     MI       
Sbjct: 875  LQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGM-KAAGYFPTMHLYRIMIGLLAKGK 933

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             +  +E   +E  +   K D+   N + K Y   G + K   V   +Q+    P   TYN
Sbjct: 934  RVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYN 993

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  + +    E+      +M+  G++P   TY SL+SA+ K  ++ + + +   + + 
Sbjct: 994  TLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSK 1053

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  LD  F++ ++  +  +G+  K  +L   MKE    P   T   ++ +Y+  G  E A
Sbjct: 1054 ECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEA 1113

Query: 451  QNLENKM 457
            + + + +
Sbjct: 1114 EKVLDNL 1120



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 158/381 (41%), Gaps = 45/381 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK    ++A+ +   ML+  +KP++  ++AL+  Y ++G   EA  T + M
Sbjct: 468 TYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCM 527

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S  KPD   YS+++    +F+      K+  EM     +     Y  ++   GK  +
Sbjct: 528 LR-SGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENR 586

Query: 236 FEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            E++      M E  G +  +  ++      + ++ N+ ++          G + D + L
Sbjct: 587 EEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAI------SQGCELDRENL 640

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEY----- 348
             +  SYG +G + + R ++DF+++       +    +I    KA  + + + EY     
Sbjct: 641 LSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARD 700

Query: 349 ------------------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                                         F  M+  G++P+   Y S+V  Y K G   
Sbjct: 701 FGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPE 760

Query: 379 KVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               ++ Q E   ++ D       +I AYG+    +K   L  +++++  + D   +  +
Sbjct: 761 TAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNAL 820

Query: 438 IQAYNALGMTEAAQNLENKMI 458
           I AY A G  E A+ + N M+
Sbjct: 821 IHAYAASGCYERARAIFNTMM 841



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 5/256 (1%)

Query: 119  KLMV-MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD-EAFSTINDMK 176
            ++M+ +L K K+      +   M     KP + ++ +++  Y  +G+ D +    +  + 
Sbjct: 923  RIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLY--TGIGDFKKTGQVYQLI 980

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
              +  KPD  TY+ LI    +  R +    ++ EM  +G+E    TY ++I  +GK +  
Sbjct: 981  QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1040

Query: 237  EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E+ E  F  ++ S  C  D    + M+  + NSGN  K EK        GV+  I T+++
Sbjct: 1041 EQAEELFEGLL-SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHL 1099

Query: 297  LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
            L  SY  +G  ++   V+D ++      + + Y+ VI+ + K G      +   +MK  G
Sbjct: 1100 LMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDG 1159

Query: 357  MKPNSITYCSLVSAYS 372
            ++P+   +   V A S
Sbjct: 1160 LEPDHRIWTCFVRAAS 1175



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 35/289 (12%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y  L+  C +   F    +I ++M + G+E S   Y +++  Y K    E          
Sbjct: 711 YESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAE 770

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E G    D+     +I AYG     +K E             D +  N L  +Y  +G Y
Sbjct: 771 EKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCY 830

Query: 308 DKMRSVMDFMQKRFFFPTVVTYN-----------------------------------IV 332
           ++ R++ + M +    PTV + N                                   ++
Sbjct: 831 ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLM 890

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ F  AG+I ++++ ++ MK  G  P    Y  ++   +K   +  V++++ ++E +  
Sbjct: 891 LDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXF 950

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             D   +N ++  Y   GD +K G+++  ++E    PD  T+ T+I  Y
Sbjct: 951 KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMY 999


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 177/372 (47%), Gaps = 5/372 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           + Q  WQ AL+++  L  + WY    +    ++ +LGK  Q   A  +F          +
Sbjct: 138 VGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIF-ARAEAASGNT 196

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIEK 206
           V VY A++  Y ++G   +    ++ M+S   C+PD+ +++ LI +  K      +L  +
Sbjct: 197 VQVYNAMMGVYARTGRFTKVQELLDLMRS-RGCEPDLVSFNTLINARLKSGTMVTNLAIE 255

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L E+   GI+   +TYNT+I    +    EE    ++ MV +  C PD++T N+MIS Y
Sbjct: 256 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMV-AHRCQPDLWTYNAMISVY 314

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G  G   +  + + +    G   D  T N L  ++ R G  DK++ + + M K  F    
Sbjct: 315 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 374

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TYN +I  +GK G  +   + +  MK  G  P+++TY  L+ +  KA +I +   ++ +
Sbjct: 375 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 434

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + N+ V      F+ +I  Y +AG   +  E F  M      PD++ ++ M+        
Sbjct: 435 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 494

Query: 447 TEAAQNLENKMI 458
           +  A  L  +M+
Sbjct: 495 SGKAMKLYQEMV 506



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 161/426 (37%), Gaps = 99/426 (23%)

Query: 113 RCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA---------- 158
           RCQ    T+  ++ + G+C    +A  LF+ + S G  P    Y +L+ A          
Sbjct: 299 RCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKV 358

Query: 159 -------------------------YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
                                    YG+ G  D AF   +DMK +S   PD  TY++LI 
Sbjct: 359 KEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMK-LSGRSPDAVTYTVLID 417

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV------ 247
           S  K +      ++++EM    ++ +  T++ +I GY KA K  E E +F  M+      
Sbjct: 418 SLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKP 477

Query: 248 ----------------ESGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWY 279
                           ESG               PD      M+   G     E + K  
Sbjct: 478 DHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVV 537

Query: 280 NEFN-LMGVKADI------------QTLNILTKSYGRA---GMYDKMRSVMDFMQKRFFF 323
            +   L G+ + +               N+L  +  +      Y K R    F      F
Sbjct: 538 KDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELF 597

Query: 324 PTVVT---------YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             +++         Y+I+++ F  +G+  K E+    MK  G++P   T   L+ +YS +
Sbjct: 598 EGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGS 657

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G   + + +L  ++   + L T  ++ +I AY + GD     +  + MK+    PD+  +
Sbjct: 658 GQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIW 717

Query: 435 ATMIQA 440
              ++A
Sbjct: 718 TCFVRA 723



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 33/286 (11%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS---AYGQSGLLDEAFST 171
           +TF+ L+    K  +  +A   F+ ML  G+KP    Y+ ++     + +SG   +A   
Sbjct: 445 RTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESG---KAMKL 501

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-----GIECS------- 219
             +M  +   KPD   Y ++++   K +R + + K++ +M  L      + CS       
Sbjct: 502 YQEM-VLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGEC 560

Query: 220 ----------AVTYNTIIDGYGKAKKFE---EMESSFSAMVESGGCHPDIFTLNSMISAY 266
                     A++    +D YGKA+ F      E  F  ++ S  C  D    + M+  +
Sbjct: 561 FDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLL-SKECKLDRSFYHIMMKMF 619

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            NSGN  K EK        GV+  I T+++L  SY  +G  ++   V+D ++      + 
Sbjct: 620 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLST 679

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           + Y+ VI+ + K G      +   +MK  G++P+   +   V A S
Sbjct: 680 LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAAS 725


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 165/342 (48%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK ++P++A  + + M ++G  P+   Y +L+SAY + GLL+EA      M
Sbjct: 301 TYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQM 360

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    K  + D   ++  EM  +G + +  T+N +I  +G   K
Sbjct: 361 VH-KGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGK 419

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   ++   C PDI T N++++ +G +G   ++   + E    G  A+  T N
Sbjct: 420 FAEMMKVFDD-IKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFN 478

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G +D+  +V   M +    P + TYN V+    + G  E+ E+   +M+  
Sbjct: 479 TLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDG 538

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN ++Y SL+ AY+    I ++++   ++ +  V         ++    ++  + + 
Sbjct: 539 RCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIET 598

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              FL ++ R   PD  T   M+  Y    M   A  + N M
Sbjct: 599 ERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFM 640



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 173/350 (49%), Gaps = 4/350 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKPSVDV 151
           +++ A+ +F  + QQ        T+  ++ + GK   P    + L E M S G+ P +  
Sbjct: 208 RYRDAVNLFNKM-QQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYT 266

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+S   +  L +EA      MK +    PD  TY+ L+    K  R     K+L EM
Sbjct: 267 YNTLISCCRRGSLYEEAVHLFQQMK-LEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEM 325

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G   ++VTYN++I  Y K    EE     + MV  G   PD+FT  +++S +  +G 
Sbjct: 326 EANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKG-IKPDVFTYTTLLSGFEKAGK 384

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +   + + E   +G K +I T N L K +G  G + +M  V D ++     P +VT+N 
Sbjct: 385 DDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNT 444

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++  FG+ G   ++   FK+MK  G      T+ +L+SAYS+ G   +  ++ + +  + 
Sbjct: 445 LLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAG 504

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           V+ D   +N +++A  + G  E+  ++   M++  C P+ +++++++ AY
Sbjct: 505 VVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAY 554



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 172/344 (50%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     Q S +F+ M   G     D +  L+SAY + G  D+A +    M
Sbjct: 441 TWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSM 500

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +   ++  EK+LAEM     + + ++Y++++  Y   K+
Sbjct: 501 LE-AGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKE 559

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M ++F+  + SG        L +++     S  + + E+ + E    G+  DI TLN
Sbjct: 560 IERM-NAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLN 618

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   +++FM +  F P++ TYN ++  + ++ + +K EE  +++  +
Sbjct: 619 AMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEK 678

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GMKP+ I+Y +++ AY + G + +   I  ++++S ++ D   +N  I+ Y       + 
Sbjct: 679 GMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEA 738

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLEN 455
            ++   M ++ C PD  T+ +++  Y  L     A    +NL N
Sbjct: 739 IDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSN 782



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 160/377 (42%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K  + + A  +F  M + G KP++  + AL+  +G  G   E     +D+
Sbjct: 371 TYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDI 430

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K + +C PD+ T++ L+    +      +  I  EM   G      T+NT+I  Y +   
Sbjct: 431 K-LCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGS 489

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
           F++  + + +M+E+G                                   C P+  + +S
Sbjct: 490 FDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSS 549

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++ AY N   IE+M  +  E     V+     L  L     ++ +  +       +++R 
Sbjct: 550 LLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRG 609

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P + T N ++  +G+   + K  E    M      P+  TY SL+  YS++    K +
Sbjct: 610 ISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSE 669

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ILR+V    +  D   +N +I AY + G +++   +F  MK+   VPD +T+ T I  Y
Sbjct: 670 EILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATY 729

Query: 442 NALGMTEAAQNLENKMI 458
            A  M   A ++   MI
Sbjct: 730 AADSMFAEAIDVVRYMI 746



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 166/372 (44%), Gaps = 11/372 (2%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTK-----LMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           K  LAL +F  +R      +    F+      ++ +LGK  +   A+ L   + +DG+  
Sbjct: 135 KCDLALAVFHWVRTNN---SNTNLFSSSAIPVIIKILGKAGRVSSAASLLLALQNDGVHI 191

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEK 206
            V  YT L++AY  SG   +A +  N M+    C P + TY++++    K    +  +  
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQ-DGCNPTLITYNVVLNVYGKMGMPWSNVTA 250

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++  M   G+     TYNT+I    +   +EE    F  M +  G  PD  T N+++  +
Sbjct: 251 LVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQM-KLEGFTPDKVTYNALLDVF 309

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G S   ++  K   E    G      T N L  +Y + G+ ++   +   M  +   P V
Sbjct: 310 GKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDV 369

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            TY  ++  F KAG  +   + F +M+  G KPN  T+ +L+  +   G   ++  +   
Sbjct: 370 FTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDD 429

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++  +   D   +N +++ +GQ G   ++  +F  MK    V +  TF T+I AY+  G 
Sbjct: 430 IKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGS 489

Query: 447 TEAAQNLENKMI 458
            + A  +   M+
Sbjct: 490 FDQAMAVYKSML 501



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 154/316 (48%), Gaps = 17/316 (5%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS---ILIKSC 195
           ++LSD   P+ D+   ++ A G S   D A +  + +++ ++   ++++ S   ++IK  
Sbjct: 111 LLLSDHPHPASDIL-GIIKALGFSNKCDLALAVFHWVRT-NNSNTNLFSSSAIPVIIKIL 168

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R      +L  +   G+      Y  +I+ Y  + ++ +  + F+ M +  GC+P 
Sbjct: 169 GKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKM-QQDGCNPT 227

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDK 309
           + T N +++ YG  G       W N   L+      GV  D+ T N L     R  +Y++
Sbjct: 228 LITYNVVLNVYGKMG-----MPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEE 282

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              +   M+   F P  VTYN +++ FGK+   ++  +  ++M+  G  P S+TY SL+S
Sbjct: 283 AVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLIS 342

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           AY+K GL+ +   +  Q+ +  +  D   +  ++S + +AG  +   ++FL M+   C P
Sbjct: 343 AYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKP 402

Query: 430 DNITFATMIQAYNALG 445
           +  TF  +I+ +   G
Sbjct: 403 NICTFNALIKMHGNRG 418



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 37/317 (11%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           + A   TF  L+    +C   +QA  +++ ML  G+ P +  Y A+++A  + GL +++ 
Sbjct: 470 FVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSE 529

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             + +M+    CKP+  +YS L+ +       + +     E+    +E  AV   T++  
Sbjct: 530 KVLAEMED-GRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLV 588

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN--------------------- 268
             K+    E E +F  +    G  PDI TLN+M+S YG                      
Sbjct: 589 NSKSDLLIETERAFLEL-RRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTP 647

Query: 269 --------------SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
                         S N +K E+   E    G+K D  + N +  +Y R G   +   + 
Sbjct: 648 SLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIF 707

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M+     P VVTYN  I T+       +  +  + M  +G KP+  TY S+V  Y K 
Sbjct: 708 SEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKL 767

Query: 375 GLIMKVDSILRQVENSD 391
               + +S ++ + N D
Sbjct: 768 DQRHEANSFVKNLSNLD 784


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 4/361 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +    WQ AL+++  L   +WY    +    ++ +LG+  QP  A  LF+   S  +   
Sbjct: 66  VANTSWQRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDRAES-SIGNC 124

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKI 207
           V VY +L+S Y + G  +     +  M+    C+PD+ T++I+IK+ T+   +  L   +
Sbjct: 125 VQVYNSLMSVYARHGDWNSVQQLLCRMQD-RGCRPDLVTFNIVIKARTRGGMQEGLASSL 183

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L ++   G+    +TYNT+I       +  +    F  M +  GC PDI+T N+MIS YG
Sbjct: 184 LQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEM-QRQGCDPDIWTYNAMISVYG 242

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            +G +E     +      G   D  T N +  ++ R G  +++  +   M+        +
Sbjct: 243 RAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEI 302

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TYN +I  +GKAG   K EE + +MK  G  P+S+T+  L+    KAG + +  ++   +
Sbjct: 303 TYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDM 362

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             S V      F+ +I AY +A         +  M      PD + ++ M+  +   GM 
Sbjct: 363 LKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMP 422

Query: 448 E 448
           E
Sbjct: 423 E 423



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 167/346 (48%), Gaps = 10/346 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           + +L VML K  +  +A        + G     D    LV++Y ++G+ DEA +   DM 
Sbjct: 544 YKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMT 603

Query: 177 SVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   +   +V   +++   C K   F   E ++  +    ++ SA+ +  II  YGK K 
Sbjct: 604 TEGLEMDAEVLQTAVMCY-CRKGFAFVAHELLIDCLHAFDVKDSAM-HVAIIASYGKLKL 661

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++  E  F  + +  G   +    ++++SAY  +GN E+  +  +     G++ +    N
Sbjct: 662 WQNAEIVFRDL-QQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCAN 720

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            + +++GRAG   K + + +F Q+       P   T+ ++   F + G++E+    +++M
Sbjct: 721 YVLEAFGRAG---KAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQM 777

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  G  P+   + +L++ YS+  + +  + +++ ++ + + LD   +N +IS Y + G  
Sbjct: 778 KEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSY 837

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                +F  M+E  C PD  TF T+I  Y+   M + AQ L  +MI
Sbjct: 838 RNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMI 883



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 2/255 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A L+FE M   G  P +  Y A++S YG++G + EA S+I  +       PD  TY+ ++
Sbjct: 215 AILIFEEMQRQGCDPDIWTYNAMISVYGRAGRV-EAASSIFRIMQEQGFTPDAVTYNSVL 273

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +  +  R + +E+I   M         +TYNT+I  YGKA    + E  +  M E G C
Sbjct: 274 HAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC 333

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PD  T   +I   G +G + +    + +     V+  +Q  + +  +Y +A M+     
Sbjct: 334 -PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEH 392

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
               M +    P ++ Y+++++ F KAG  EK    +K M   G+KP    Y  +V  + 
Sbjct: 393 TYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFY 452

Query: 373 KAGLIMKVDSILRQV 387
           +   + +++++ +++
Sbjct: 453 QKSSVAEIENLSKEM 467



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 146/351 (41%), Gaps = 35/351 (9%)

Query: 125  GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
            GK K  + A ++F  +   G   +   Y+AL+SAY ++G  + A   +++M + +  +P+
Sbjct: 657  GKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVA-AGLQPN 715

Query: 185  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
                + ++++  +  +   I +    +  +GI  ++ T+  I   + +    EE  S + 
Sbjct: 716  ATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYR 775

Query: 245  AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 270
             M E+G                                  G   DI   N MIS Y   G
Sbjct: 776  QMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLG 835

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +       +     +G   D  T N L   Y R  M  + ++++  M K    P + TY 
Sbjct: 836  SYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYT 895

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  +G+    E  E  FK +   G KP++  Y  +++ Y KAG   K++ I+ Q++  
Sbjct: 896  TLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVD 955

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                     + ++ +YG+ G   K  E+  T+ E    PD I + ++I ++
Sbjct: 956  GFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSH 1006



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 3/311 (0%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LL + + +  +K S  ++ A++++YG+  L   A     D++       +   YS L+ +
Sbjct: 633 LLIDCLHAFDVKDSA-MHVAIIASYGKLKLWQNAEIVFRDLQQ-HGFAGNTSAYSALLSA 690

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +   F+   + L  M   G++ +A   N +++ +G+A K +E+   F  + E G   P
Sbjct: 691 YAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMG-ISP 749

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +  T   +  A+  +GN+E+    Y +    G    IQ    L   Y R  +      ++
Sbjct: 750 NSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELV 809

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             ++K      +  YN +I  + K G        FK M+  G  P++ T+ +L+  YS+ 
Sbjct: 810 KDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRN 869

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
            ++ +  ++LR++  +    +   +  +ISAYG+    E    +F ++ E  C PD   +
Sbjct: 870 QMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAY 929

Query: 435 ATMIQAYNALG 445
             MI  Y   G
Sbjct: 930 NVMINVYRKAG 940



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/430 (19%), Positives = 165/430 (38%), Gaps = 76/430 (17%)

Query: 99  KIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           +I G++R      ARC     T+  ++ M GK     +A  L+  M  +G  P    +T 
Sbjct: 287 RIRGMMRD-----ARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTV 341

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+   G++G ++EA +   DM   S  +P +  +S +I +  K   F   E   + M   
Sbjct: 342 LIDTLGKAGFVNEAAAMFEDMLK-SQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRA 400

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+    + Y+ ++D + KA   E+    + AMV SG   P++     M+  +    ++ +
Sbjct: 401 GVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSG-LKPELSVYAIMVRVFYQKSSVAE 459

Query: 275 MEK-----------------------WYNEFNLM-------GVKADIQTLNILTKSYGRA 304
           +E                        +Y E  ++       GV   ++TLN +  ++  +
Sbjct: 460 IENLSKEMVQSSASLAALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEAS 519

Query: 305 GMYDKMR-----------SVMDFMQKRFF---------------FPTVVTYN-------- 330
           G     R           SV   + KR                   T  TY         
Sbjct: 520 GKLSDARDLVHAVSSIEPSVAAHLYKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFL 579

Query: 331 -IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            +++ ++ +AG  ++    F  M   G++ ++    + V  Y + G       +L    +
Sbjct: 580 KVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLH 639

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           +  + D+     II++YG+    +    +F  +++     +   ++ ++ AY   G  E 
Sbjct: 640 AFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFER 699

Query: 450 AQNLENKMIA 459
           A    + M+A
Sbjct: 700 ATRALDNMVA 709


>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 635

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 203/440 (46%), Gaps = 11/440 (2%)

Query: 11  PTTATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAE-KDLSKILRTEFAIKNIEKKVS 69
           P    H P +   P  RI  +  +P  I       ++E ++L ++L  + + K    K  
Sbjct: 15  PFPKIHYPPYITIPT-RISCVS-NPTRINRKQTTDQSETQELVRLLTRKISDKEPLLKTL 72

Query: 70  SKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ 129
           +K  K +  +      +E  K  KW   L++F  +++Q+WY A    ++KL+ ++GK  Q
Sbjct: 73  NKYVKLVRTEHCFLLFEELGKHDKWLQCLEVFRWMQRQRWYIADNGVYSKLISVMGKKGQ 132

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDV 185
              A  LF  M + G +P   VY +L+SA+     +S  L +A      MK+   CKP++
Sbjct: 133 IRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEKMKTTERCKPNI 192

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY+IL+++  +    + +  +  ++    +     T+N ++DGYGK     EMES    
Sbjct: 193 VTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVR 252

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +S     D+ T N +I +YG     +KME+ +   +    K  + T N +  +YG+A 
Sbjct: 253 M-KSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMILNYGKAR 311

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + DK  +V   M    + P+ VT+  +I  +G  G +    E F ++    +     T  
Sbjct: 312 LKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLN 371

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +++  Y   GL  + DS+  + ++  +  D   +  +  AY +A   E + +L   M + 
Sbjct: 372 AMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYTKANSKELLDKLLKQMDKD 431

Query: 426 HCVPDNITFATMIQAYNALG 445
             +P+   F   + A  A+G
Sbjct: 432 SVIPNKRFF---LDALGAIG 448


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 177/372 (47%), Gaps = 5/372 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           + Q  WQ AL+++  L  + WY    +    ++ +LGK  Q   A  +F          +
Sbjct: 163 VGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIF-ARAEAASGNT 221

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIEK 206
           V VY A++  Y ++G   +    ++ M+S   C+PD+ +++ LI +  K      +L  +
Sbjct: 222 VQVYNAMMGVYARTGRFTKVQELLDLMRS-RGCEPDLVSFNTLINARLKSGTMVTNLAIE 280

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L E+   GI+   +TYNT+I    +    EE    ++ MV +  C PD++T N+MIS Y
Sbjct: 281 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMV-AHRCQPDLWTYNAMISVY 339

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G  G   +  + + +    G   D  T N L  ++ R G  DK++ + + M K  F    
Sbjct: 340 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 399

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TYN +I  +GK G  +   + +  MK  G  P+++TY  L+ +  KA +I +   ++ +
Sbjct: 400 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 459

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + N+ V      F+ +I  Y +AG   +  E F  M      PD++ ++ M+        
Sbjct: 460 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 519

Query: 447 TEAAQNLENKMI 458
           +  A  L  +M+
Sbjct: 520 SGKAMKLYQEMV 531



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 160/386 (41%), Gaps = 38/386 (9%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  + G LRQ+     R + +  L+         E+A  +F  M+ DG  P+V
Sbjct: 759  KLKLWQKAESLVGSLRQKCTMVDR-KVWNALIHAYAASGCYERARAIFNTMMRDGPSPTV 817

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            D    L+ A    G LDE +  I +++ +   K    + ++++ +         ++KI  
Sbjct: 818  DSVNGLMQALIVDGRLDELYVVIQELQDMG-FKISKSSITLMLDAFAHAGNIFEVKKIYQ 876

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   +   Y  +I    K K+  ++E+  S M E     PD+   NS++  Y   
Sbjct: 877  GMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM-EVARFKPDLSIWNSVLKLYTGI 935

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
            G+ +K  + Y      G+K D  T N L   Y R    ++  S+M  M++    P + TY
Sbjct: 936  GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTY 995

Query: 330  NIVIETFGKAGHIEKMEEYFKK-----------------------------------MKH 354
              +I  FGK   +E+ EE F+                                    MK 
Sbjct: 996  KSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKE 1055

Query: 355  RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             G++P   T   L+ +YS +G   + + +L  ++   + L T  ++ +I AY + GD   
Sbjct: 1056 AGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNV 1115

Query: 415  MGELFLTMKERHCVPDNITFATMIQA 440
              +  + MK+    PD+  +   ++A
Sbjct: 1116 AIQKLMEMKKDGLEPDHRIWTCFVRA 1141



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 136/307 (44%), Gaps = 2/307 (0%)

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            V+ AL+ AY  SG  + A +  N M       P V + + L+++     R D +  ++ E
Sbjct: 784  VWNALIHAYAASGCYERARAIFNTMMR-DGPSPTVDSVNGLMQALIVDGRLDELYVVIQE 842

Query: 211  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            +  +G + S  +   ++D +  A    E++  +  M ++ G  P +     MI       
Sbjct: 843  LQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGM-KAAGYFPTMHLYRIMIGLLAKGK 901

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             +  +E   +E  +   K D+   N + K Y   G + K   V   +Q+    P   TYN
Sbjct: 902  RVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYN 961

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  + +    E+      +M+  G++P   TY SL+SA+ K  ++ + + +   + + 
Sbjct: 962  TLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSK 1021

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  LD  F++ ++  +  +G+  K  +L   MKE    P   T   ++ +Y+  G  E A
Sbjct: 1022 ECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEA 1081

Query: 451  QNLENKM 457
            + + + +
Sbjct: 1082 EKVLDNL 1088



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 158/381 (41%), Gaps = 45/381 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK    ++A+ +   ML+  +KP++  ++AL+  Y ++G   EA  T + M
Sbjct: 436 TYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCM 495

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S  KPD   YS+++    +F+      K+  EM     +     Y  ++   GK  +
Sbjct: 496 LR-SGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENR 554

Query: 236 FEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            E++      M E  G +  +  ++      + ++ N+ ++          G + D + L
Sbjct: 555 EEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAI------SQGCELDRENL 608

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEY----- 348
             +  SYG +G + + R ++DF+++       +    +I    KA  + + + EY     
Sbjct: 609 LSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARD 668

Query: 349 ------------------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                                         F  M+  G++P+   Y S+V  Y K G   
Sbjct: 669 FGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPE 728

Query: 379 KVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               ++ Q E   ++ D       +I AYG+    +K   L  +++++  + D   +  +
Sbjct: 729 TAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNAL 788

Query: 438 IQAYNALGMTEAAQNLENKMI 458
           I AY A G  E A+ + N M+
Sbjct: 789 IHAYAASGCYERARAIFNTMM 809



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 5/256 (1%)

Query: 119  KLMV-MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD-EAFSTINDMK 176
            ++M+ +L K K+      +   M     KP + ++ +++  Y  +G+ D +    +  + 
Sbjct: 891  RIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLY--TGIGDFKKTGQVYQLI 948

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
              +  KPD  TY+ LI    +  R +    ++ EM  +G+E    TY ++I  +GK +  
Sbjct: 949  QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1008

Query: 237  EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E+ E  F  ++ S  C  D    + M+  + NSGN  K EK        GV+  I T+++
Sbjct: 1009 EQAEELFEGLL-SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHL 1067

Query: 297  LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
            L  SY  +G  ++   V+D ++      + + Y+ VI+ + K G      +   +MK  G
Sbjct: 1068 LMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDG 1127

Query: 357  MKPNSITYCSLVSAYS 372
            ++P+   +   V A S
Sbjct: 1128 LEPDHRIWTCFVRAAS 1143



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 35/289 (12%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y  L+  C +   F    +I ++M + G+E S   Y +++  Y K    E          
Sbjct: 679 YESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAE 738

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E G    D+     +I AYG     +K E             D +  N L  +Y  +G Y
Sbjct: 739 EKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCY 798

Query: 308 DKMRSVMDFMQKRFFFPTVVTYN-----------------------------------IV 332
           ++ R++ + M +    PTV + N                                   ++
Sbjct: 799 ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLM 858

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ F  AG+I ++++ ++ MK  G  P    Y  ++   +K   +  V++++ ++E +  
Sbjct: 859 LDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARF 918

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             D   +N ++  Y   GD +K G+++  ++E    PD  T+ T+I  Y
Sbjct: 919 KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMY 967


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 169/338 (50%), Gaps = 4/338 (1%)

Query: 122 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           VM G CK    ++A  L  +M     KP+  +Y+ ++ A+ + G+LD A S +N+MK  S
Sbjct: 184 VMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKS 243

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD++TYS LI +  K  +++ +  +  EM +L I  +  T+N++IDG  K  K E+ 
Sbjct: 244 -IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA 302

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E     M+E G   PD+ T N +I  YG  G +++  + ++      ++ +I + NIL  
Sbjct: 303 EEIMRYMIEKG-VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILIN 361

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y R    D+   V   + ++   P++VT N+++    + G  +  + +F +M   G  P
Sbjct: 362 GYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +  T+C+L+  Y K GL+ +  S   ++E      +   +  +I    + G ++K    F
Sbjct: 422 DLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATF 481

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +      PD IT+  MI  Y   G+ + A+++  KM
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 5/313 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-- 188
           + A  LF  M+     PSV  ++ L+ A      +    S ++  + +   +  V+ +  
Sbjct: 54  DDAFSLFRQMVRTKPLPSVVSFSKLLKALVH---MKHYSSVVSLFREIHKLRIPVHEFIL 110

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SI++ SC   HR DL   +LA     GI  + V +NT++ G     K ++    F  +V 
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVR 170

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
              C P+     ++++     G+ +K             K +    +I+  ++ + GM D
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLD 230

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              S+++ M+++   P + TY+ +I+   K    E +   F +M H  + PN  T+ S++
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               K G +   + I+R +    V  D   +N II  YG  G V++  E+F +M  +   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 429 PDNITFATMIQAY 441
           P+ I++  +I  Y
Sbjct: 351 PNIISYNILINGY 363



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 142/303 (46%), Gaps = 3/303 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  +W+    +F  +     Y   C TF  ++  L K  + E A  +   M+  G
Sbjct: 255 IDALCKLSQWENVRTLFLEMIHLNIYPNVC-TFNSVIDGLCKEGKVEDAEEIMRYMIEKG 313

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P V  Y  ++  YG  G +D A    + M + S  +P++ +Y+ILI    +  + D  
Sbjct: 314 VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKS-IEPNIISYNILINGYARQKKIDEA 372

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++  E+S  G++ S VT N ++ G  +  + +  ++ F  M+ +G   PD++T  +++ 
Sbjct: 373 MQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI-PDLYTHCTLLG 431

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            Y  +G +E+    +++        +IQ    +     + G  DK  +  + +      P
Sbjct: 432 GYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHP 491

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V+TY  +I  + + G +++ ++  +KM+  G   ++ TY  +V  + ++  + ++ + L
Sbjct: 492 DVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFL 551

Query: 385 RQV 387
            ++
Sbjct: 552 EEI 554



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 152/349 (43%), Gaps = 38/349 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           F  L+  L    + + A  LF+ ++ + + +P+  +Y  +++   + G   +AF  +  M
Sbjct: 145 FNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLM 204

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S  KP+   YSI+I +  K    D    +L EM    I     TY+T+ID   K  +
Sbjct: 205 EQGST-KPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E + + F  M+     +P++ T NS+I      G +E  E+                  
Sbjct: 264 WENVRTLFLEMIHLN-IYPNVCTFNSVIDGLCKEGKVEDAEE------------------ 304

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                            +M +M ++   P V+TYN++I+ +G  G +++  E F  M ++
Sbjct: 305 -----------------IMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINK 347

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++PN I+Y  L++ Y++   I +   + R++    +       N ++    + G  +  
Sbjct: 348 SIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSA 407

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
              F  M     +PD  T  T++  Y   G+ E A +  +K+   +E++
Sbjct: 408 QNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDT 456



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 106/257 (41%), Gaps = 35/257 (13%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           Q ++A  +F+ M++  ++P++  Y  L++ Y +   +DEA     ++ S    KP + T 
Sbjct: 333 QVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPSIVTC 391

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF----- 243
           ++L+    +  R    +    EM   G      T+ T++ GY K    EE  S F     
Sbjct: 392 NVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLER 451

Query: 244 --------------SAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEK 274
                           + ++G               G HPD+ T  +MIS Y   G +++
Sbjct: 452 RREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            +    +    G  AD +T N++ + + R+    +M++ ++ +  + F     T  ++++
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571

Query: 335 TFGKAGHIEKMEEYFKK 351
              +   +  M   F +
Sbjct: 572 IIAEDPSLLNMIPEFHR 588


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 164/348 (47%), Gaps = 7/348 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            FT ++  L + K+ ++A  + E  +  G +P    Y   +    ++  +D+AF  +  M
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P   TY+ L+    K  R D    +L +M   G   +  TY  +IDG  KA +
Sbjct: 69  DE-KKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGR 127

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA----DI 291
            EE    F  M+   GC PD F   ++I     SG  E+    Y E N     A    D+
Sbjct: 128 VEEARRIFVDML-GNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDV 186

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDF-MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
            T   L     +AG   + R V D    +R F P  VTY  +I+   K G +E+  E F 
Sbjct: 187 VTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFH 246

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M++RG +P+++TY +L+  + KA +I K   + RQ+  S  ++ T  +N I+    +AG
Sbjct: 247 EMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAG 306

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            V +    FL M+ER CV   +T++ ++  + + G   AA  L  +M+
Sbjct: 307 RVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 6/350 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS---T 171
           +T+T ++  L K  + E+A  +F  ML +G +P   VYTAL+    +SG  +EA++    
Sbjct: 113 KTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKE 172

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA-EMSYLGIECSAVTYNTIIDGY 230
            N  K  +   PDV TY+ LI    K  R     ++   E    G    AVTY +IIDG 
Sbjct: 173 ANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGL 232

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  + EE    F  M  + G  PD  T  ++I  +  +  I K  + Y +    G    
Sbjct: 233 CKLGRVEEGCERFHEM-RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVS 291

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T NI+     +AG   +  +    M++R    TVVTY+ +++ F   G++    E F+
Sbjct: 292 TVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFR 351

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  RG +PN ++Y  ++    +AG + K      ++    +  D   FN  +    Q  
Sbjct: 352 RMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRL 411

Query: 411 DVEKMG-ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           D    G ELF +M  +   P+  +++ ++      G  E A  +  +M++
Sbjct: 412 DTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVS 461



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 5/329 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K  + ++A  + E M+  G  P++  YT ++    ++G ++EA     DM
Sbjct: 79  TYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDM 138

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
              + C+PD + Y+ LIK   K  +    + L ++  A   +       VTY ++IDG  
Sbjct: 139 LG-NGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLC 197

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           KA +  E    F       G  PD  T  S+I      G +E+  + ++E    G + D 
Sbjct: 198 KAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   + +A M  K   V   M +     + VTYNI+++   KAG + +    F  
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLA 317

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ RG     +TY +L+  +   G +     + R++ +     +   +N II    +AG 
Sbjct: 318 MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 377

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQA 440
           + K    F  + +R   PD  TF   +  
Sbjct: 378 LAKAYFYFEKLLQRRLCPDVYTFNAFLHG 406



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 148/351 (42%), Gaps = 40/351 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFE-VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+T L+  L K  +  +A  +F+   +  G  P    YT+++    + G ++E     ++
Sbjct: 188 TYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHE 247

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++    +PD  TY+ LI    K        ++  +M   G   S VTYN I+DG  KA 
Sbjct: 248 MRN-RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAG 306

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E  ++F AM E  GC   + T ++++  + + GN+    + +      G + ++ + 
Sbjct: 307 RVAEAYATFLAM-EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSY 365

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN------------------------ 330
           NI+ +   RAG   K     + + +R   P V T+N                        
Sbjct: 366 NIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMV 425

Query: 331 ------------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                       I+++   +AG +E   E F++M  RG+ P+ + + +L+     AG + 
Sbjct: 426 SQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVD 485

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           +   + R++E      D   +  ++    +   +E+   L   MK + C P
Sbjct: 486 EALEVFRELERRSAP-DAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAP 535



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%)

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           M    D+    ++     R    D+  SV++   +    P  VTYN+ I+   KA  ++ 
Sbjct: 1   MPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDD 60

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             +  KKM  +   P ++TY +LV    KAG + +  ++L Q+           +  +I 
Sbjct: 61  AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVID 120

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
              +AG VE+   +F+ M    C PD   +  +I+     G  E A  L  +  A K ++
Sbjct: 121 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180


>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 174/361 (48%), Gaps = 5/361 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  ++  W   L+IF  +++Q+WY A    ++KL+ ++G+  Q   A  LF  M + G
Sbjct: 93  FEELGRRDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSG 152

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            KP   VY +L+ A+     +S  L +A    + MK +  C+P++ TY+IL+++C +   
Sbjct: 153 CKPDTSVYNSLIGAHLHSRDKSKALVKALGYFDKMKGMERCQPNIVTYNILLRACARASD 212

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              ++ +  ++    +     TYN +IDGYGK     EMES    M +S  C PD+ T N
Sbjct: 213 TKQVDILFKDLDESIVSPDIYTYNGVIDGYGKNGMITEMESVLVRM-KSKQCRPDVITFN 271

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG     +KME+ +        +    T N +  +YG+A + +K  SV++ MQ+ 
Sbjct: 272 ILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAESVIEKMQEL 331

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P  VT   +I  +     + K ++ F ++          +  +++ AY    L M+ 
Sbjct: 332 GFKPNYVTQECLINMYAYCDCVSKAQQIFDELVSSQSTVPLSSLNAMLDAYCMNRLPMEA 391

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D +L       V+     +  +  AY +A D   + +L   M ++  VP+   F   ++A
Sbjct: 392 DRLLDTAIEKGVVPSASTYKLLYRAYTRANDKMLVQKLLQRMNKQGIVPNKKFFLDALEA 451

Query: 441 Y 441
           +
Sbjct: 452 F 452



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 281
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 125 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKSKALVKALGY 183

Query: 282 FNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
           F+ M      + +I T NIL ++  RA    ++  +   + +    P + TYN VI+ +G
Sbjct: 184 FDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYG 243

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G I +ME    +MK +  +P+ IT+  L+ +Y +     K++ + + +  S      P
Sbjct: 244 KNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 303

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        AQ + +++
Sbjct: 304 TFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDEL 363

Query: 458 IA 459
           ++
Sbjct: 364 VS 365


>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 175/365 (47%), Gaps = 15/365 (4%)

Query: 90  KQKKWQLALKI-FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           KQ KW L L++ F  +++Q+WY+      +KL+V +GK KQ   A   F+ +  +G +P 
Sbjct: 15  KQSKWTLILEVTFRWMQEQKWYRLDNGFHSKLIVTMGKAKQLRMAVWFFKEVKRNGHRPD 74

Query: 149 VDVYTALVSAYGQSG----LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             +Y AL++A+ Q+        +A     +MK+ ++CKPD+ TY+IL++   +      +
Sbjct: 75  TSLYNALITAHLQAEDKRIGFAKALQLFEEMKTKANCKPDLVTYNILLRGSAQVRDILQV 134

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           E+   EM    I  + ++YN +I  YGKA    +ME +   M       PD  T N++I 
Sbjct: 135 ERFFEEMEVEKIHPNLISYNGVIGAYGKAGDLVQMEKTLFTMRILKHIKPDTVTSNTLIE 194

Query: 265 AYGNSGNIEKMEKWYNEF----NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           +YG   +  KME+ +       N    + D +T NIL  SY R G   KM      M+  
Sbjct: 195 SYGYGRDFVKMEQVFKSMTAAKNKQTSRPDAKTYNILMASYARLGEVGKMEWSCSRMEAA 254

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F   + +Y I++  +G+ G I  M E F +M   GM+P   T  +++ AY K     + 
Sbjct: 255 NFKLNLRSYEILMTGYGEVGAIASMSECFYQMLQAGMQPQKSTLNAMLRAYCKHNCFEEA 314

Query: 381 DSILRQVENSDVILDTPFFNCIISAYG---QAGDVEKMGELFLTMKERHCVPDNITFATM 437
           + +L           T  +  ++ AY    ++ DVE + E    M +    P   TF   
Sbjct: 315 EELLNDALGWQTRPRTSSYLILLRAYAKERRSSDVEMLTE---RMAKVGIAPCAATFLEA 371

Query: 438 IQAYN 442
           +++++
Sbjct: 372 LESFS 376



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 1/142 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++   +++  LM   G+       S  F  ML  G++P      A++ AY +    +EA 
Sbjct: 256 FKLNLRSYEILMTGYGEVGAIASMSECFYQMLQAGMQPQKSTLNAMLRAYCKHNCFEEAE 315

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +ND       +P   +Y IL+++  K  R   +E +   M+ +GI   A T+   ++ 
Sbjct: 316 ELLNDALGWQ-TRPRTSSYLILLRAYAKERRSSDVEMLTERMAKVGIAPCAATFLEALES 374

Query: 230 YGKAKKFEEMESSFSAMVESGG 251
           +  +  +EE  +  +A  +S G
Sbjct: 375 FSLSCGYEEKLTESAAEAQSDG 396


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 174/355 (49%), Gaps = 7/355 (1%)

Query: 85   LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG--KCKQPEQASLLFEVMLS 142
            L   +K +K   AL+IF  L++         TF   +++ G  K  + ++A  L + M +
Sbjct: 675  LSSLVKDEKIDFALQIFNELQESSLVP---DTFVYNIMVNGLVKSNRVDEACKLVDSMKN 731

Query: 143  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
              + P +  YT+L+   G+SG L+EAF+    M      +PDV  Y+ L+    K  +  
Sbjct: 732  QNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH-EPDVVAYTSLMDVLGKGGKLS 790

Query: 203  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
                I   M+        VTY+++ID  GK  + EE    F   + S GC P++   +S+
Sbjct: 791  HALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSI-SKGCTPNVGVYSSL 849

Query: 263  ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
            I ++G  G +++  + + E        +I T N L     +AG  +    +++ M+K   
Sbjct: 850  IDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGC 909

Query: 323  FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
             P +VTYNI+I+  GK G +++ E YFK+MK +G+ P+ IT+ SL+ +  K   +++   
Sbjct: 910  VPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACE 969

Query: 383  ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   +E          +N +I   G+AG V +   +F  MK + C+PD IT   M
Sbjct: 970  LFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 169/374 (45%), Gaps = 37/374 (9%)

Query: 103 LLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+  +Q  +    T++ LM    K  Q E++  LF+ M+  G    V  Y+ +++   
Sbjct: 585 LLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLC 644

Query: 161 QSGLLDEAFSTINDMKS-----------------VSDCK-----------------PDVY 186
           +S  +D+A      MK                  V D K                 PD +
Sbjct: 645 KSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTF 704

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y+I++    K +R D   K++  M    I     TY +++DG GK+ + EE  + F+ M
Sbjct: 705 VYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E G   PD+    S++   G  G +      +          D+ T + L  S G+ G 
Sbjct: 765 TEEGH-EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGR 823

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            ++     +    +   P V  Y+ +I++FGK G +++  E F++M+ R   PN +TY +
Sbjct: 824 VEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNN 883

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+S  +KAG +   + +L ++E    + D   +N +I   G+ G V++    F  MKE+ 
Sbjct: 884 LLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKG 943

Query: 427 CVPDNITFATMIQA 440
            VPD ITF ++I++
Sbjct: 944 IVPDVITFTSLIES 957



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 217/477 (45%), Gaps = 32/477 (6%)

Query: 1   MHLSNSIFT---PPTTATHLPKFYKEPVFRIQAIKRSPGPIQEL-GIQKEAEKD----LS 52
           +HL+   FT        +H    Y   + R+   + +   +Q L  + KE  +     L+
Sbjct: 162 LHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLT 221

Query: 53  KILRTEFAIKNIEKKVSS-KKYKNLWPKP-------VLEALDEAIKQKKWQLALKIFGLL 104
            +LRT  +  N+   +    + K+    P       VLE L   +K   +  A+ +FG L
Sbjct: 222 SLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELL---VKGGFYHSAVIVFGKL 278

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
            Q +  Q   QTF   +    +  + + A+   + M+  G+ P V  +T L+ A  +SG 
Sbjct: 279 GQFR-IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN 337

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           +DEA    N MK++  C P+V TY+ L+    K  R +   ++  EM        A+ YN
Sbjct: 338 IDEACKFFNGMKNLR-CSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYN 396

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           T+IDG GKA + +     F  M + G   P++ T N MIS  G +G   +  + +++   
Sbjct: 397 TLIDGLGKAGEADMACGLFKEMKDRG-LVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKE 455

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G   D+ T N L    G+ G  DK+ +++  M ++           +I     AGH   
Sbjct: 456 QGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEK-------GGECIISRDSNAGHEGT 508

Query: 345 MEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           +E   + +++  +   S   ITY +L+SA+   G + +   +L  ++  + I     +  
Sbjct: 509 IEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTT 568

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++   G+AG +++   L   M+++ C P  +T+++++ ++      E + +L ++M+
Sbjct: 569 LVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMV 625



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 166/373 (44%), Gaps = 33/373 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  L+  LGK  + + A  LF+ M   GL P++  Y  ++S  G++G   EA+   +D+
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC----------------- 218
           K      PDV+TY+ LI    K  + D +  I+ EM   G EC                 
Sbjct: 454 KE-QGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGA 512

Query: 219 --------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                           +TYNT++  +      +E       M +   C P + T  +++ 
Sbjct: 513 DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVM-KKHECIPTVVTYTTLVD 571

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
             G +G +++      E    G +  + T + L  S+ +    ++  S+ D M ++    
Sbjct: 572 GLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVA 631

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V TY++VI    K+  +++  + F +MK  GM+P    Y +L+S+  K   I     I 
Sbjct: 632 DVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIF 691

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            +++ S ++ DT  +N +++   ++  V++  +L  +MK ++ +PD  T+ +++      
Sbjct: 692 NELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKS 751

Query: 445 GMTEAAQNLENKM 457
           G  E A N+  KM
Sbjct: 752 GRLEEAFNMFTKM 764



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 190/452 (42%), Gaps = 51/452 (11%)

Query: 18  PKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLW 77
           P+     +  ++A++RS G   +L       K ++ ++R       + K++   K+K L 
Sbjct: 97  PRLDVPEISNLEAVERSGGDKFKL-------KKINGVIRRRKWDAEMGKQLERLKFK-LN 148

Query: 78  PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF 137
           P  V    D  + QK   LA   F    QQ  Y     T+T ++  L   ++ +    + 
Sbjct: 149 PGLVC---DVVVNQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQIL 205

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
             M  +G + S+ + T+L+  +G +  +  A    N MKS   C P    Y+ +++    
Sbjct: 206 TAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFG-CNPSTNMYNFVLE---- 260

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                    +L +  +         Y++ +  +GK  +F                 PD  
Sbjct: 261 ---------LLVKGGF---------YHSAVIVFGKLGQFR--------------IQPDAQ 288

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T    + ++  SG ++   +   E    G+   + T  +L  +  ++G  D+     + M
Sbjct: 289 TFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGM 348

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +     P VVTY  ++    KAG +E+  E F +MK     P++I Y +L+    KAG  
Sbjct: 349 KNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEA 408

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                + +++++  ++ +   +N +IS  G+AG   +  +LF  +KE+  VPD  T+ T+
Sbjct: 409 DMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTL 468

Query: 438 IQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
           I      G  +    +  +M+   E  G+ +I
Sbjct: 469 IDVLGKGGQMDKVLAIIKEMV---EKGGECII 497



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 2/299 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+SA+  +G +DEA   +  MK   +C P V TY+ L+    K  R D    +L EM
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKK-HECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G E S VTY++++  + K  + EE  S F  MV  G C  D+ T + +I+    S +
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKG-CVADVSTYSLVINCLCKSDD 648

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++    +      G++  +     L  S  +    D    + + +Q+    P    YNI
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++    K+  +++  +    MK++ + P+  TY SL+    K+G + +  ++  ++    
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              D   +  ++   G+ G +     +F  M ++ CVPD +T++++I +    G  E A
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEA 827


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 178/374 (47%), Gaps = 5/374 (1%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           +++ Q+ W  A +++  L  + WY    +  + ++ +LGK  Q   A  +F       ++
Sbjct: 195 KSVGQESWHRAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVF-TRAEPSVE 253

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLI 204
            +V VY A++  Y +SG  ++    + D+     C+PD+ +++ LI +  K      +L 
Sbjct: 254 NTVKVYNAMMGVYARSGKFNKV-QELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLA 312

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L E+   G+    +TYNT+I    +A   EE  + F  MV +  C PD++T N+MIS
Sbjct: 313 IELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMV-AHHCEPDLWTYNAMIS 371

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            YG  G   K E+ +N+    G   D  + N    ++ R G  +K++ + + M K  F  
Sbjct: 372 VYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGK 431

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             +TYN +I  +GK G  +   + ++ MK  G  P+ ITY  L+ +  K   I +   ++
Sbjct: 432 DEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMM 491

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ N+ V      ++ +I  Y +AG   +  E F  M      PD + ++ M+  +   
Sbjct: 492 SEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRF 551

Query: 445 GMTEAAQNLENKMI 458
              + A     +MI
Sbjct: 552 NEPKRAMTFYKEMI 565



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 3/352 (0%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            + K WQ A  + G +RQ      R + +  L+         E+A  +F  M+ DG  P+V
Sbjct: 792  RLKLWQKAESVAGNMRQSCITVNR-KVWNALIEAYAASGCYERARAVFNTMMKDGPSPTV 850

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            D    L+ A    G L+E +  + +++ +   K    +  +++ +  +      ++KI  
Sbjct: 851  DSINGLLQALIVDGRLEELYVVVQELQDIG-FKISKSSILLMLDAFARAGNIFEVKKIYH 909

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   S   Y  +     + K+  ++E+  S M E  G  PD+   NS++  Y   
Sbjct: 910  GMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEM-EEAGFKPDLSIWNSVLKMYVAI 968

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +  K  + Y      G++ D  T NIL   Y R     +   +MD M+     P + TY
Sbjct: 969  DDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTY 1028

Query: 330  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
              ++ +FGK   +E+ EE F++++  G K +   Y  ++  Y  +G   K   +   +++
Sbjct: 1029 KSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKD 1088

Query: 390  SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              V       + ++ +YG +G  ++  ++   +KE       + ++++I AY
Sbjct: 1089 EGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAY 1140



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 120/252 (47%), Gaps = 6/252 (2%)

Query: 123  MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-- 180
            +L + KQ      +   M   G KP + ++ +++  Y     +D+   T    + + +  
Sbjct: 929  LLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVA---IDDFRKTTQIYQRIKEDG 985

Query: 181  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             +PD  TY+ILI    + HR      ++ EM  +G+E    TY +++  +GK +  E+ E
Sbjct: 986  LEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAE 1045

Query: 241  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              F  + +S GC  D    + M+  Y NSG+  K ++ ++     GV+  I T+++L  S
Sbjct: 1046 ELFEEL-QSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVS 1104

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
            YG +G   +   V+  +++     + + Y+ VI+ + + G      +  K++K  G++P+
Sbjct: 1105 YGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPD 1164

Query: 361  SITYCSLVSAYS 372
               +   + A S
Sbjct: 1165 HRIWTCFIRAAS 1176



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 37/290 (12%)

Query: 188  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
            +  LI+ C +   F    ++ ++M + GI+ S   Y +++  Y K   F E       + 
Sbjct: 712  FEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMG-FPETAHHLIDLT 770

Query: 248  ESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E+ G    +I     +I AYG     +K E          +  + +  N L ++Y  +G 
Sbjct: 771  ETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGC 830

Query: 307  YDKMRSVMDFMQKRFFFPTVVTYN-----------------------------------I 331
            Y++ R+V + M K    PTV + N                                   +
Sbjct: 831  YERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILL 890

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            +++ F +AG+I ++++ +  MK  G  P+   Y  +     +   +  V+++L ++E + 
Sbjct: 891  MLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAG 950

Query: 392  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
               D   +N ++  Y    D  K  +++  +KE    PD  T+  +I  Y
Sbjct: 951  FKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMY 1000



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 52/321 (16%), Positives = 123/321 (38%), Gaps = 7/321 (2%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           +P++A   ++ M+ DG+ P   +Y  ++   G +  +++    + DM+ V    P   +Y
Sbjct: 553 EPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISY 612

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            IL+K         ++ + +++   +  E      ++       +   + +E     +++
Sbjct: 613 -ILVKGDCYDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLE-----LLK 666

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
                       +++     +  ++   K Y+    +G          L +      ++ 
Sbjct: 667 EHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFT 726

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT-YCSL 367
           +   V   M+      +   Y  ++  + K G  E         +  G   N+I+ Y  +
Sbjct: 727 EASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDV 786

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           + AY +  L  K +S+   +  S + ++   +N +I AY  +G  E+   +F TM +   
Sbjct: 787 IEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGP 846

Query: 428 VPDNITFATMIQAYNALGMTE 448
            P   +   ++QA    G  E
Sbjct: 847 SPTVDSINGLLQALIVDGRLE 867


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 183/342 (53%), Gaps = 7/342 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +  + A++++  +++++  +   +T+T ++ + GK  QP  +  +F  M S G
Sbjct: 249 LDGLLKARCSEKAVEVYQRMKKERC-RTNTETYTLMINVYGKANQPMSSLRVFREMKSVG 307

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++       
Sbjct: 308 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGA 366

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D +G+A   +E E++F  + + G   P + +   ++S
Sbjct: 367 SEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQG-MRPTMKSHMLLLS 425

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR---- 320
           A+  SGN+ + E+   + +  G++ D   LN +  +YGRAG  D M  +   M++     
Sbjct: 426 AHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAI 485

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P   TYN+++  +G+AG++++ME  F+ +  RG+  + +T+ S + AY++     + 
Sbjct: 486 AGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQC 545

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
             +  ++ ++    D      +++A      VE++  +  +M
Sbjct: 546 LRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVKAIVRSM 587



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 39/345 (11%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           V+     +P +  Y  L+ AYGQ   L EA +    +   + C P   TY++L+++    
Sbjct: 162 VLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLE-ARCVPTEDTYALLLRAYCGS 220

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------ 246
            +    E +++EM   GI  +A  YN  +DG  KA+  E+    +  M            
Sbjct: 221 GQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETY 280

Query: 247 ----------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
                                 ++S GC P+I T  ++++A+   G  EK E+ + E   
Sbjct: 281 TLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G + D+   N L ++Y RAG+      +   M+     P   +YNI+++ FG+AG  ++
Sbjct: 341 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQE 400

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            E  F+++K +GM+P   ++  L+SA++++G + + + ++ Q+  S +  DT   N +++
Sbjct: 401 AEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 460

Query: 405 AYGQAGDVEKMGELFLTMKERH----CVPDNITFATMIQAYNALG 445
           AYG+AG ++ M  LF  M+         PD  T+  M+ AY   G
Sbjct: 461 AYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAG 505



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 172/339 (50%), Gaps = 10/339 (2%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+       Q  +A  +   M  +G+ P+  VY A +    ++   +
Sbjct: 200 EARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSE 259

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A      MK    C+ +  TY+++I    K ++     ++  EM  +G + +  TY  +
Sbjct: 260 KAVEVYQRMKK-ERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTAL 318

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  M ++G   PD++  N+++ AY  +G  +   + ++    MG
Sbjct: 319 VNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 377

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NIL  ++GRAG++ +  +    ++++   PT+ ++ +++    ++G++ + E
Sbjct: 378 CEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL----DTPFFNCI 402
           E   ++   G++P++    ++++AY +AG +  ++ +   +E  D  +    DT  +N +
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVM 497

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++AYG+AG +++M   F ++  R    D +T+ + I AY
Sbjct: 498 VNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAY 536



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 155/320 (48%), Gaps = 8/320 (2%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K +  E+A  +++ M  +  + + + YT +++ YG++     +     +MKSV  CKP++
Sbjct: 254 KARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVG-CKPNI 312

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     FS 
Sbjct: 313 CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSL 372

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M E  GC PD  + N ++ A+G +G  ++ E  + E    G++  +++  +L  ++ R+G
Sbjct: 373 M-EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSG 431

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----MKPN 360
              +   VM  + K    P     N ++  +G+AG ++ ME  F  M+ RG       P+
Sbjct: 432 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAME-RGDGAIAGAPD 490

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + TY  +V+AY +AG + ++++  R +    +  D   +   I AY +  +  +   +F 
Sbjct: 491 TSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFE 550

Query: 421 TMKERHCVPDNITFATMIQA 440
            M +  C PD  T   ++ A
Sbjct: 551 EMVDAGCYPDAGTAKVLLAA 570


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 184/346 (53%), Gaps = 15/346 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK---LMV-MLGKCKQPEQASLLFEVM 140
           LD  +K +  + A++++  ++++     RC+T T+   LM+ + GK  QP  +  +F  M
Sbjct: 249 LDGLLKARCSEKAVEVYQRMKKE-----RCRTNTZTYXLMINVYGKANQPMSSLRVFREM 303

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            S G KP++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++   
Sbjct: 304 KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGL 362

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                +I + M ++G E    +YN ++D +G+A   +E E++F  + + G   P + +  
Sbjct: 363 PQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQG-MRPTMKSHM 421

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK- 319
            ++SA+  SGN+ + E+   + +  G++ D   LN +  +YGRAG  D M  +   M++ 
Sbjct: 422 LLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERG 481

Query: 320 ---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
                  P   TYN+++  +G+AG++++ME  F+ +  RG+  + +T+ S + AY++   
Sbjct: 482 DGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKE 541

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
             +   +  ++ ++    D      +++A      VE++  +  +M
Sbjct: 542 YGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSM 587



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 163/345 (47%), Gaps = 39/345 (11%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           V+     +P +  Y  L+ AYGQ   L EA +    +   + C P   TY++L+++    
Sbjct: 162 VLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLE-ARCVPTEDTYALLLRAYCGS 220

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------ 246
            +    E +++EM   GI  +A  YN  +DG  KA+  E+    +  M            
Sbjct: 221 GQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTY 280

Query: 247 ----------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
                                 ++S GC P+I T  ++++A+   G  EK E+ + E   
Sbjct: 281 XLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G + D+   N L ++Y RAG+      +   M+     P   +YNI+++ FG+AG  ++
Sbjct: 341 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQE 400

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            E  F+++K +GM+P   ++  L+SA++++G + + + ++ Q+  S +  DT   N +++
Sbjct: 401 AEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 460

Query: 405 AYGQAGDVEKMGELFLTMKE----RHCVPDNITFATMIQAYNALG 445
           AYG+AG ++ M  LF  M+         PD  T+  ++ AY   G
Sbjct: 461 AYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAG 505



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 170/339 (50%), Gaps = 10/339 (2%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+       Q  +A  +   M  +G+ P+  VY A +    ++   +
Sbjct: 200 EARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSE 259

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A      MK    C+ +  TY ++I    K ++     ++  EM  +G + +  TY  +
Sbjct: 260 KAVEVYQRMKK-ERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTAL 318

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  M ++G   PD++  N+++ AY  +G  +   + ++    MG
Sbjct: 319 VNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMG 377

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NIL  ++GRAG++ +  +    ++++   PT+ ++ +++    ++G++ + E
Sbjct: 378 CEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL----DTPFFNCI 402
           E   ++   G++P++    ++++AY +AG +  ++ +   +E  D       DT  +N +
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVL 497

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++AYG+AG +++M   F ++  R    D +T+ + I AY
Sbjct: 498 VNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAY 536



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 154/320 (48%), Gaps = 8/320 (2%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K +  E+A  +++ M  +  + + + Y  +++ YG++     +     +MKSV  CKP++
Sbjct: 254 KARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVG-CKPNI 312

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     FS 
Sbjct: 313 CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSL 372

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M E  GC PD  + N ++ A+G +G  ++ E  + E    G++  +++  +L  ++ R+G
Sbjct: 373 M-EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSG 431

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----MKPN 360
              +   VM  + K    P     N ++  +G+AG ++ ME  F  M+ RG       P+
Sbjct: 432 NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAME-RGDGASAGAPD 490

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + TY  LV+AY +AG + ++++  R +    +  D   +   I AY +  +  +   +F 
Sbjct: 491 TSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFE 550

Query: 421 TMKERHCVPDNITFATMIQA 440
            M +  C PD  T   ++ A
Sbjct: 551 EMVDAGCYPDAGTAKVLLAA 570


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 186/382 (48%), Gaps = 11/382 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  +  I    +  +W+ A+ I   + Q+    +R  T+  L+   G      +A 
Sbjct: 167 KPDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSR-STYNNLINACGSSGNWREAL 225

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            L + M  +G+ P +  +  ++SAY       +A S    MK  ++ +PD  T +I+I  
Sbjct: 226 KLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKG-TNIRPDTTTLNIIIYC 284

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            TK  +++    I   M     EC    VT+ +II  Y    + E   + FS MV + G 
Sbjct: 285 LTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMV-AEGL 343

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY + G  ++    +N     G++ D+ +   L  SYGR+    K R 
Sbjct: 344 KPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKARE 403

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V + M++    P +V+YN +I+ +G  G + +  E  ++M+  G+ PN+++ C+L++A  
Sbjct: 404 VFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACG 463

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           +    + +D +L+  E   + L+T  +N  I +Y   G+ EK   ++ +M++   +PD +
Sbjct: 464 RCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAV 523

Query: 433 TFATMIQAYNALGMTEAAQNLE 454
           TF  +I       MT+  + LE
Sbjct: 524 TFTVLISG--CCKMTKYCEALE 543



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D+Y  ++  + +    D+A     +M+    CKPD  T + LI +  +  ++     I+ 
Sbjct: 136 DIYNMMIRLHARHNWTDQARGLFFEMQKWR-CKPDAETCNALINAHGRSGQWRWAMNIME 194

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    I  S  TYN +I+  G +  + E       M E+G   PD+ T N ++SAY   
Sbjct: 195 DMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENG-VGPDLVTHNIILSAYKTG 253

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVV 327
               K   ++       ++ D  TLNI+     + G Y+K   +   M+++     P VV
Sbjct: 254 AQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVV 313

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T+  +I  +   G IE     F  M   G+KPN ++Y +L+ AY+  G+  +  S+   +
Sbjct: 314 TFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAI 373

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           +NS +  D   +  ++++YG++   +K  E+F  MK     P+ +++  MI AY + G+ 
Sbjct: 374 KNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLL 433

Query: 448 EAAQNLENKM 457
             A  +  +M
Sbjct: 434 AEAVEVLREM 443



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 172/386 (44%), Gaps = 36/386 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  +++ A+ IF  +R+++   A C     TFT ++ +     Q E    +F  M+++GL
Sbjct: 287 KLGQYEKAIGIFKSMREKR---AECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGL 343

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           KP++  Y  L+ AY   G+  EA S  N +K+ S  +PDV +Y+ L+ S  +  +     
Sbjct: 344 KPNIVSYNTLMGAYASHGMNKEALSVFNAIKN-SGLRPDVVSYTSLLNSYGRSQQPKKAR 402

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++   M    ++ + V+YN +ID YG      E       M E  G +P+  ++ ++++A
Sbjct: 403 EVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREM-EQDGIYPNAVSICTLLAA 461

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
            G       ++          +K +    N    SY   G ++K  S+   M+K    P 
Sbjct: 462 CGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPD 521

Query: 326 VVTYNIVIETFGK---------------------------AGHIEKMEEYFKKMKHRGMK 358
            VT+ ++I    K                           +G I + E  F KMK  G  
Sbjct: 522 AVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCS 581

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+ +TY  ++ AY+ A    K  ++L+++E  ++  DT   + ++ A+ + GD  K+  L
Sbjct: 582 PDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLIL 641

Query: 419 FLTMKERHCVPDNITFATMIQAYNAL 444
              M+E+     +  F  M+ A + L
Sbjct: 642 AEFMREKEIPLSDAIFFEMVSACSLL 667



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 11/332 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  ++     +    ++T L+   G+ +QP++A  +FE+M  D LKP++  Y A++
Sbjct: 366 ALSVFNAIKNSG-LRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMI 424

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +GLL EA   + +M+      P+  +   L+ +C +  R   I+ +L       I
Sbjct: 425 DAYGSNGLLAEAVEVLREMEQ-DGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHI 483

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + + YN+ I  Y    +FE+  S + +M +S    PD  T   +IS         KM 
Sbjct: 484 KLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSK-VIPDAVTFTVLISGCC------KMT 536

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K+      +    D++    +TK    +G   +  S+ + M+     P VVTY +++  +
Sbjct: 537 KYCEALEFLSEMMDLKIP--MTKEAYSSGKITEAESMFNKMKMAGCSPDVVTYTMMLHAY 594

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             A H +K     ++M+   ++P++I   +L+ A++K G   KV  +   +   ++ L  
Sbjct: 595 NAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSD 654

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             F  ++SA     D     EL   M+    V
Sbjct: 655 AIFFEMVSACSLLRDWRTTIELIKLMESSFSV 686



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +      ++    + E      K D +T N L  ++GR+G +    ++M
Sbjct: 136 DIY--NMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIM 193

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M ++   P+  TYN +I   G +G+  +  +  KKM   G+ P+ +T+  ++SAY   
Sbjct: 194 EDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTG 253

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  S    ++ +++  DT   N II    + G  EK   +F +M+E+   C PD +
Sbjct: 254 AQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVV 313

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF ++I  Y+  G  E  + + + M+A
Sbjct: 314 TFTSIIHLYSVNGQIENCRAVFSTMVA 340



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 129/326 (39%), Gaps = 45/326 (13%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+   G+C +     ++ +      +K +   Y + + +Y   G  ++A S    M+  S
Sbjct: 458 LLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRK-S 516

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD  T+++LI  C K  ++    + L+EM  L I  +   Y++         K  E 
Sbjct: 517 KVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSS--------GKITEA 568

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           ES F+ M +  GC PD+ T   M+ AY  + + +K      E     ++ D    + L +
Sbjct: 569 ESMFNKM-KMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMR 627

Query: 300 SYGRAGMYDKMRSVMDFMQKR-------FFFPTVVT------YNIVIETF---------- 336
           ++ + G   K+  + +FM+++        FF  V        +   IE            
Sbjct: 628 AFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVV 687

Query: 337 ------------GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                       GK+G IE M + F K+   G + N  TY  L+      G   K   +L
Sbjct: 688 SIGLLNQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVL 747

Query: 385 RQVENSDVILDTPFFNCIISAYGQAG 410
             +E + V      +  IIS   ++G
Sbjct: 748 EWMEEARVQPSNGMYFDIISFAQKSG 773


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 160/350 (45%), Gaps = 37/350 (10%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           +M     +P V VY  L+ AYGQ  L  +  ST  ++   S C P   TY++L+K+  K 
Sbjct: 145 IMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLE-SHCIPTEDTYALLLKAYCKS 203

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 229
              +  E + AEM   G+  SA+ YN  IDG                             
Sbjct: 204 GLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTY 263

Query: 230 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
                 YGK  K    ++ F  M  +  C P+I T  ++++A    G  EK E+ + +  
Sbjct: 264 TMLINVYGKESKSHMAQNIFDEM-RTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQ 322

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G + D+   N L +SY RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 323 EAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 382

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             +  F++MK  G+ P   ++  L+SAYS AG + K + I+ Q+  S +  DT   N ++
Sbjct: 383 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 442

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + YG+ G   KM +LF TM++  C  D  T+  +I  Y   G  E  + L
Sbjct: 443 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEEL 492



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 172/326 (52%), Gaps = 3/326 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A++IF  +++    Q    T+T L+ + GK  +   A  +F+ M +   KP++  +TALV
Sbjct: 244 AVEIFHRMKRDGC-QPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALV 302

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +A  + GL ++A      M+  +  +PDVY Y+ L++S ++        +I + M ++G 
Sbjct: 303 NALAREGLCEKAEEIFEQMQE-AGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGC 361

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E    +YN ++D YG+A   E+ ++ F  M +  G  P + +   ++SAY ++GN+ K E
Sbjct: 362 EPDRASYNIMVDAYGRAGLHEDAQAVFEEM-KRIGITPTMKSHMLLLSAYSSAGNVAKCE 420

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               + +  G+K D   +N +   YGR G + KM  +   MQK      + TYNI+I  +
Sbjct: 421 DIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVY 480

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           G+AG +E+MEE F+ +  + ++P+ +T+ S + AYS+  L  +   +  ++ ++    D 
Sbjct: 481 GRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDG 540

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTM 422
                ++SA      +E++  +  TM
Sbjct: 541 GTAKVLLSACSSEEQIEQVTNVVRTM 566



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 171/343 (49%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K    E+A  +F  M   GL PS  VY A +    + G   +A    + M
Sbjct: 192 TYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRM 251

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C+P   TY++LI    K  +  + + I  EM     + +  T+  +++   +   
Sbjct: 252 KR-DGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGL 310

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+ E  F  M E+G   PD++  N+++ +Y  +G      + ++    MG + D  + N
Sbjct: 311 CEKAEEIFEQMQEAG-YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 369

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +YGRAG+++  ++V + M++    PT+ ++ +++  +  AG++ K E+   +M   
Sbjct: 370 IMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS 429

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP++    S+++ Y + G   K++ +   ++      D   +N +I+ YG+AG VE+M
Sbjct: 430 GLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERM 489

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  +  ++  PD +T+ + I AY+   + +    L  KMI
Sbjct: 490 EELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMI 532



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 155/326 (47%), Gaps = 2/326 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  +F  M  DG +P+ D YT L++ YG+      A +  ++M++   CKP++ T++ L
Sbjct: 243 KAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRT-QRCKPNICTFTAL 301

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           + +  +    +  E+I  +M   G E     YN +++ Y +A  F    +   ++++  G
Sbjct: 302 VNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAG-FPYGAAEIFSLMQHMG 360

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C PD  + N M+ AYG +G  E  +  + E   +G+   +++  +L  +Y  AG   K  
Sbjct: 361 CEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCE 420

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M K    P     N ++  +G+ G   KME+ F  M+    + +  TY  L++ Y
Sbjct: 421 DIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVY 480

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            +AG + +++ + + +   ++  D   +   I AY +    ++  ELF  M +  C PD 
Sbjct: 481 GRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDG 540

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
            T   ++ A ++    E   N+   M
Sbjct: 541 GTAKVLLSACSSEEQIEQVTNVVRTM 566



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 1/237 (0%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           + YN ++D YG+   ++++ES++  ++ES  C P   T   ++ AY  SG +EK E  + 
Sbjct: 156 IVYNLLMDAYGQRSLYKDVESTYLELLESH-CIPTEDTYALLLKAYCKSGLLEKAEAVFA 214

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E    G+       N       + G   K   +   M++    PT  TY ++I  +GK  
Sbjct: 215 EMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKES 274

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
                +  F +M+ +  KPN  T+ +LV+A ++ GL  K + I  Q++ +    D   +N
Sbjct: 275 KSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYN 334

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++ +Y +AG      E+F  M+   C PD  ++  M+ AY   G+ E AQ +  +M
Sbjct: 335 ALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEM 391



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 82/170 (48%)

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + D+   N+L  +YG+  +Y  + S    + +    PT  TY ++++ + K+G +EK E 
Sbjct: 152 RPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEA 211

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F +M+  G+ P++I Y + +    K G  +K   I  +++       T  +  +I+ YG
Sbjct: 212 VFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYG 271

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +         +F  M+ + C P+  TF  ++ A    G+ E A+ +  +M
Sbjct: 272 KESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQM 321



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%)

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M K  F P V+ YN++++ +G+    + +E  + ++      P   TY  L+ AY K+G
Sbjct: 145 IMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSG 204

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           L+ K +++  ++    +      +N  I    + G+  K  E+F  MK   C P   T+ 
Sbjct: 205 LLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYT 264

Query: 436 TMIQAYNALGMTEAAQNLENKM 457
            +I  Y     +  AQN+ ++M
Sbjct: 265 MLINVYGKESKSHMAQNIFDEM 286



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 3/223 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A +IF L++       R  ++  ++   G+    E A  +FE M   G+ P++  +  L+
Sbjct: 349 AAEIFSLMQHMGCEPDRA-SYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLL 407

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           SAY  +G + +    I  M   S  KPD +  + ++    +  +F  +E + + M     
Sbjct: 408 SAYSSAGNVAKCEDIIGQMHK-SGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPC 466

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN +I+ YG+A   E ME  F  ++ +    PD+ T  S I AY      ++  
Sbjct: 467 RADISTYNILINVYGRAGFVERMEELFQ-LLPAKNLEPDVVTWTSRIGAYSRKKLYKRCL 525

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + + +    G   D  T  +L  +       +++ +V+  M K
Sbjct: 526 ELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHK 568


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 181/379 (47%), Gaps = 4/379 (1%)

Query: 75  NLWPKPVLEALDEAIKQKKWQLAL--KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQ 132
           N  P  V  A+   I  ++ QL    ++F  LR++  Y      +T L+  L + ++ ++
Sbjct: 77  NFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEG-YPLDVYAYTSLISALSRNRKFKE 135

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A   FE M   G +PS+  Y  ++  YG+ G   E    + +       +PD YTY+  I
Sbjct: 136 ALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAI 195

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +C      +   ++  +M         VTYN ++D YGKA  + E  +    M ES GC
Sbjct: 196 TACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEM-ESAGC 254

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I T N ++SA+G +G      +  +     G++ D+ T   L  +Y RAG  ++   
Sbjct: 255 LPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAME 314

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           + + M+     P   T+N +I   GK  +  +M   F+ M+  G++P+ +T+ SL+ A+ 
Sbjct: 315 IYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFG 374

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           K G+  +V  + R ++ +    D   FN +I AYG+ G  ++   ++  M +  C PD  
Sbjct: 375 KNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLA 434

Query: 433 TFATMIQAYNALGMTEAAQ 451
           TF T++ A    G  E A+
Sbjct: 435 TFNTLLAALAREGRWEHAE 453



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 202/427 (47%), Gaps = 23/427 (5%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIE--KKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALK 99
           G+ +  E+ L KI+     + N E    V +    NL    +L  +    ++ +W  AL+
Sbjct: 12  GLTESGEELLRKIV----VLPNDECVSSVLTTSEPNLSSSELLSIMKGLGREGQWNKALE 67

Query: 100 IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           +F  +RQ   ++    T   ++ +LG+  Q    S LF+ +  +G    V  YT+L+SA 
Sbjct: 68  VFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISAL 127

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIEC 218
            ++    EA      MK     +P + TY+++I    K  R ++ I ++  EM   GI+ 
Sbjct: 128 SRNRKFKEALGFFEQMKEAGP-QPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQP 186

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TYNT I         EE    F+ M +S  C PD  T N+++  YG +G       W
Sbjct: 187 DEYTYNTAITACASGSLCEEATELFTQM-KSSNCTPDRVTYNALLDVYGKAG-------W 238

Query: 279 YNE-FNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           YNE  N++      G   +I T N L  ++GRAG+ +    + D M  +   P V TY  
Sbjct: 239 YNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTS 298

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++  + +AG +E+  E + +M+     PNS T+ +L+  + K     ++  I   ++   
Sbjct: 299 LLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACG 358

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           V  D   +N ++ A+G+ G   ++ ++F  MK+    PD  TF  +I+AY   G ++ A 
Sbjct: 359 VEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQAL 418

Query: 452 NLENKMI 458
           ++ + M+
Sbjct: 419 SIYDGML 425



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 164/337 (48%), Gaps = 2/337 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK     +A+ + + M S G  P++  Y  L+SA+G++GL + A    + M
Sbjct: 225 TYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    +PDV+TY+ L+ + ++  + +   +I  +M       ++ T+N +I  +GK K 
Sbjct: 285 VS-KGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKN 343

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F  M ++ G  PDI T NS++ A+G +G   ++ K +      G + D  T N
Sbjct: 344 FSEMMVIFEDM-QACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFN 402

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL ++YGR G  D+  S+ D M +    P + T+N ++    + G  E  E    ++   
Sbjct: 403 ILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRS 462

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN I Y S++ AY+  G + K+  ++  +    V          +  Y +   V++ 
Sbjct: 463 SYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEA 522

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
            + FL M+    + D  TF  MI  Y   GM + A +
Sbjct: 523 EDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATD 559



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 191/398 (47%), Gaps = 11/398 (2%)

Query: 71  KKYKNLWPKPVLEALDEAI-----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           ++ K   P+P L   +  I     K + W+  L++F  ++ Q   Q    T+   +    
Sbjct: 141 EQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQG-IQPDEYTYNTAITACA 199

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
                E+A+ LF  M S    P    Y AL+  YG++G  +EA + + +M+S + C P++
Sbjct: 200 SGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMES-AGCLPNI 258

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY+ L+ +  +    +   ++   M   GIE    TY +++  Y +A K E+    ++ 
Sbjct: 259 VTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQ 318

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M  S  C P+ FT N++I  +G + N  +M   + +    GV+ DI T N L  ++G+ G
Sbjct: 319 MRTSN-CTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNG 377

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           MY ++  V   M+K  F P   T+NI+IE +G+ G  ++    +  M   G  P+  T+ 
Sbjct: 378 MYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFN 437

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +L++A ++ G     + IL ++  S    +   +  ++ AY   G++EK+ E+  T+   
Sbjct: 438 TLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTI 497

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +     I   T +  Y+   + + A   E+  +AM+ +
Sbjct: 498 YVPFTKILLKTFVLVYSKCSLVDEA---EDAFLAMRHH 532



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 169/400 (42%), Gaps = 70/400 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+   G+      A+ + + M+S G++P V  YT+L+SAY ++G +++A    N M
Sbjct: 260 TYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQM 319

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++ S+C P+ +T++ LI    K   F  +  I  +M   G+E   VT+N+++  +GK   
Sbjct: 320 RT-SNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGM 378

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLN- 260
           + E+   F  M ++G                                  GC PD+ T N 
Sbjct: 379 YSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNT 438

Query: 261 ----------------------------------SMISAYGNSGNIEKMEKWYNEFNLMG 286
                                             SM+ AY N G +EK+++  +  + + 
Sbjct: 439 LLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIY 498

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V      L      Y +  + D+       M+   +     T+N +I  +GK G ++K  
Sbjct: 499 VPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKAT 558

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           + F  ++  G++P+ +TY  L+  Y + G+  K ++ LR+   +    D   +N +I +Y
Sbjct: 559 DTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSY 618

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
            + G +     +F  M      PD+ T+ T +  Y   GM
Sbjct: 619 SKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGM 658



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 3/326 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K   +   LK+F  +++   ++    TF  L+   G+C   +QA  +++ ML  G  P +
Sbjct: 375 KNGMYSEVLKVFRGMKKAG-FEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDL 433

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L++A  + G  + A   ++++   S  KP+   Y+ ++ +       + +++++ 
Sbjct: 434 ATFNTLLAALAREGRWEHAELILDELNR-SSYKPNDIAYASMLHAYANGGELEKLKEMVD 492

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            +  + +  + +   T +  Y K    +E E +F AM   G    D  T N+MIS YG  
Sbjct: 493 TLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLS-DTSTFNAMISMYGKK 551

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G ++K    +      G++ D+ T N L   YGR GMY K  + +         P +V+Y
Sbjct: 552 GMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSY 611

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N VI ++ K G +      F +M   G++P+S TY + V  Y   G+  +  S+++ +  
Sbjct: 612 NTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHK 671

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKM 415
           +    D   +  ++ AY + G  E++
Sbjct: 672 TGCKPDEVTYRTLVDAYCKIGKFEEV 697


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 182/379 (48%), Gaps = 12/379 (3%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF---EVMLSD 143
           +++ Q+ WQ AL++F  L  + W+    +    ++ +LG+  Q   A  +F   E  + D
Sbjct: 164 KSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD 223

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-- 201
                V VY A++  Y +SG   +A   ++ M+    C PD+ +++ LI +  K      
Sbjct: 224 ----RVQVYNAMMGVYSRSGKFSKAQELLDAMRQ-RGCVPDLISFNTLINARLKSGGLTP 278

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +L+ ++L  +   G+   A+TYNT++    +    E     F  M E+  C PD++T N+
Sbjct: 279 NLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDM-EAHRCQPDLWTYNA 337

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MIS YG  G   + E+ + E  L G   D  T N L  ++ R    +K++ V   MQK  
Sbjct: 338 MISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKV 380
           F    +TYN +I  +GK G ++   + +K MK   G  P++ITY  L+ +  KA   ++ 
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEA 457

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +++ ++ +  +      ++ +I  Y +AG  E+  + F  M      PDN+ ++ M+  
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDV 517

Query: 441 YNALGMTEAAQNLENKMIA 459
                 T  A  L   MI+
Sbjct: 518 LLRGNETRKAWVLYRDMIS 536



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 163/386 (42%), Gaps = 38/386 (9%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  + G LRQ        +T+  LM    +C   E+A  +F  M+ DG  P+V
Sbjct: 764  KLKLWQKAESVVGNLRQSG-RTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTV 822

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +    L+ A    G L+E +  + +++ +   K    +  +++ +  +      + KI +
Sbjct: 823  ESINKLLHALCVDGRLEELYVVVEELQDMG-FKISKSSILLMLDAFARAGNIFEVNKIYS 881

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   +   Y  +I+   K K+  + E   S M E      ++   NSM+  Y   
Sbjct: 882  SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEM-EEANFKVELAIWNSMLKMYTVI 940

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             + +K  + Y      G++ D  T N L   Y R    ++  S+M  M+     P + TY
Sbjct: 941  EDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTY 1000

Query: 330  NIVIETFGKAGHIEKMEEYFKK-----------------------------------MKH 354
              +I  FGK   +E+ E+ F++                                   MK+
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 355  RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             G++P   T   L+ +YS +G   + + +L  ++N++V L T  ++ +I AY ++ D + 
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKS 1120

Query: 415  MGELFLTMKERHCVPDNITFATMIQA 440
              E  L MK+    PD+  +   ++A
Sbjct: 1121 GIERLLEMKKEGLEPDHRIWTCFVRA 1146



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 135/310 (43%), Gaps = 36/310 (11%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +AS +F  +   G +PS  V  ++V  Y + G  + A+  +N                  
Sbjct: 699 EASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQ----------------- 741

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
                            AE       CS + Y  II+ YGK K +++ ES    + +SG 
Sbjct: 742 -----------------AETKGFHFACSPM-YTDIIEAYGKLKLWQKAESVVGNLRQSGR 783

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD+ T NS++SAY   G  E+    +N     G    ++++N L  +    G  +++ 
Sbjct: 784 T-PDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELY 842

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V++ +Q   F  +  +  ++++ F +AG+I ++ + +  MK  G  P    Y  ++   
Sbjct: 843 VVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   +   + ++ ++E ++  ++   +N ++  Y    D +K  +++  +KE    PD 
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDE 962

Query: 432 ITFATMIQAY 441
            T+ T+I  Y
Sbjct: 963 TTYNTLIIMY 972



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 151/348 (43%), Gaps = 6/348 (1%)

Query: 117  FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            +T ++   GK K  ++A  +   +   G  P +  + +L+SAY + G  + A +  N M 
Sbjct: 755  YTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMM 814

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                  P V + + L+ +     R + +  ++ E+  +G + S  +   ++D + +A   
Sbjct: 815  R-DGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873

Query: 237  EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             E+   +S+M ++ G  P I     MI        +   E   +E      K ++   N 
Sbjct: 874  FEVNKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 297  LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
            + K Y     Y K   V   +++    P   TYN +I  + +    E+     ++M++ G
Sbjct: 933  MLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLG 992

Query: 357  MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            + P   TY SL+SA+ K   + + + +  ++ +  + LD  F++ ++     +G   K  
Sbjct: 993  LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 417  ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAM 460
            +L   MK     P   T   ++ +Y++ G  + A+    NL+N  + +
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVEL 1100



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 118/273 (43%), Gaps = 1/273 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    E A  +FE M +   +P +  Y A++S YG+ GL  EA     ++
Sbjct: 299 TYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIEL 358

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +    PD  TY+ L+ +  +    + ++++  +M  +G     +TYNTII  YGK  +
Sbjct: 359 E-LKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQ 417

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     +  M    G +PD  T   +I + G +    +     +E   +G+K  +QT +
Sbjct: 418 LDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYS 477

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +AG  ++       M +    P  + Y+++++   +     K    ++ M   
Sbjct: 478 ALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISD 537

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           G  P+   Y  ++    K      V   +R +E
Sbjct: 538 GHTPSHSLYELMILGLMKENRSDDVQKTIRDME 570



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 168/407 (41%), Gaps = 44/407 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ +  LAL+++  ++          T+T L+  LGK  +  +A+ L   ML  G+KP++
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTL 473

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+AL+  Y ++G  +EA  T + M   S  KPD   YS+++    + +       +  
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLR-SGTKPDNLAYSVMLDVLLRGNETRKAWVLYR 532

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M   G   S   Y  +I G  K  + ++++ +   M E  G +P    ++S++   G  
Sbjct: 533 DMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEELCGMNP--LEISSVL-VKGEC 589

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ------KRFFF 323
            ++   +      N  G + +  TL  +  SY  +G + +   +++F++      KR   
Sbjct: 590 FDLAARQLKVAITN--GYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLIN 647

Query: 324 PTVVTYNIVIETFGKA-------------------------------GHIEKMEEYFKKM 352
             ++  +  +   G A                                H  +  + F ++
Sbjct: 648 EALIVLHCKVNNIGAALDEYLADPCVHGWCFGGSTMYETLLHCCVANEHYAEASQVFSEL 707

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD-TPFFNCIISAYGQAGD 411
           +  G +P+     S+V  Y K G       ++ Q E        +P +  II AYG+   
Sbjct: 708 RLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSPMYTDIIEAYGKLKL 767

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +K   +   +++    PD  T+ +++ AY   G  E A+ + N M+
Sbjct: 768 WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMM 814



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 348
           +Q  N +   Y R+G + K + ++D M++R   P ++++N +I    K+G +    + E 
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVEL 284

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +++ G++P++ITY +L+SA S+   +     +   +E      D   +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            G   +   LF+ ++ +   PD +T+ +++ A+     TE  + +  +M  M
Sbjct: 345 CGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 175/338 (51%), Gaps = 3/338 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D  +K    Q A++IF  +++    Q   +T+T L+ + GK  Q   A  LF  M S  
Sbjct: 225 IDGLMKAGNPQRAVEIFQRMKRD-CCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQK 283

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP++  YTALV+A+ + GL ++A      ++     +PDVY Y+ L+++ ++       
Sbjct: 284 CKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGH-EPDVYAYNALMEAYSRAGFPYGA 342

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+    E+ ++ F  M +  G  P + +   ++S
Sbjct: 343 AEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEM-KRLGITPTMKSHMLLLS 401

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AY  +G++ K E   NE +  G++ D   LN +   YGR G + KM  V+  M+   +  
Sbjct: 402 AYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYAT 461

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            + TYNI+I  +G+AG  EKME  F+ +  + +KP+ +T+ S + AYS+  L  K   I 
Sbjct: 462 DISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIF 521

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            ++ ++    D      ++S+      +E++  +  TM
Sbjct: 522 EEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTM 559



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 167/336 (49%), Gaps = 6/336 (1%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+         E+A  +F  M   GL PS  VY A +    ++G   
Sbjct: 176 EARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQ 235

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            A      MK    C+P   TY++LI    K  +  +  K+  EM     + +  TY  +
Sbjct: 236 RAVEIFQRMKR-DCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTAL 294

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  + E G   PD++  N+++ AY  +G      + ++    MG
Sbjct: 295 VNAFAREGLCEKAEEIFEQLQEDGH-EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMG 353

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NI+  +YGR G+++  ++V + M++    PT+ ++ +++  + KAG + K E
Sbjct: 354 CEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCE 413

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           +   ++   G++P++    S+++ Y + G   K++ +L  +E+     D   +N +I+ Y
Sbjct: 414 DIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIY 473

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           G+AG  EKM  LF ++  ++  PD +T+ + + AY+
Sbjct: 474 GRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYS 509



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 167/368 (45%), Gaps = 2/368 (0%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L L I   +  +  +Q+    F  ++   G+    + A   +  ++     P+ D 
Sbjct: 126 KKWDLILLICQWILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDT 185

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+ AY  SGLL++A +   +M+      P    Y+  I    K        +I   M
Sbjct: 186 YALLLKAYCTSGLLEKAEAIFAEMRKYG-LPPSAIVYNAYIDGLMKAGNPQRAVEIFQRM 244

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                + S  TY  +I+ +GKA +       F+ M  S  C P+I T  ++++A+   G 
Sbjct: 245 KRDCCQPSTETYTLLINLHGKASQSYMALKLFNEM-RSQKCKPNICTYTALVNAFAREGL 303

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            EK E+ + +    G + D+   N L ++Y RAG       +   MQ     P   +YNI
Sbjct: 304 CEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNI 363

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +++ +G+ G  E  +  F++MK  G+ P   ++  L+SAYSKAG + K + I+ ++  S 
Sbjct: 364 MVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESG 423

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +  DT   N +++ YG+ G   KM E+   M+      D  T+  +I  Y   G  E  +
Sbjct: 424 LEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKME 483

Query: 452 NLENKMIA 459
            L   + A
Sbjct: 484 GLFQSLAA 491



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 10/303 (3%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +ALK+F  +R Q+     C T+T L+    +    E+A  +FE +  DG +P V  Y AL
Sbjct: 271 MALKLFNEMRSQKCKPNIC-TYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNAL 329

Query: 156 VSAYGQSGL---LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           + AY ++G      E FS +  M     C+PD  +Y+I++ +  +    +  + +  EM 
Sbjct: 330 MEAYSRAGFPYGAAEIFSLMQHM----GCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMK 385

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
            LGI  +  ++  ++  Y KA    + E   + + ESG   PD F LNSM++ YG  G  
Sbjct: 386 RLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESG-LEPDTFVLNSMLNLYGRLGQF 444

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            KME+            DI T NIL   YGRAG ++KM  +   +  +   P VVT+   
Sbjct: 445 GKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSR 504

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV-ENSD 391
           +  + +     K  E F++M   G  P+  T   L+S+ S    I +V +++R + +N +
Sbjct: 505 LGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTMHKNME 564

Query: 392 VIL 394
            +L
Sbjct: 565 TVL 567



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEE--YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           F   V+ +N+VI+ +G+   + KM E  YF+ ++ R + P   TY  L+ AY  +GL+ K
Sbjct: 144 FQSDVMIFNLVIDAYGRKS-LYKMAETTYFELIEARCI-PTEDTYALLLKAYCTSGLLEK 201

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            ++I  ++    +      +N  I    +AG+ ++  E+F  MK   C P   T+  +I 
Sbjct: 202 AEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLIN 261

Query: 440 AYNALGMTEAAQNLENKMIAMK 461
            +     +  A  L N+M + K
Sbjct: 262 LHGKASQSYMALKLFNEMRSQK 283


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 179/354 (50%), Gaps = 4/354 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKP 147
           +   +++ A+ +F  + +++  +    T+  ++ + GK   P  +   LFE M + G+ P
Sbjct: 44  VSNGRYREAVMVFKKM-EEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLP 102

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
               Y  L++   +  L +EA +   DMKS+    PD  TY+ L+    K  R     ++
Sbjct: 103 DEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFV-PDKVTYNALLDVYGKSRRTKEAMEV 161

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EM   G   S VTYN++I  Y +    +E     + MVE GG + D+FT  +++S + 
Sbjct: 162 LREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVE-GGINLDVFTYTTLLSGFV 220

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            +G  E   + + E    G K +I T N L K +G  G + +M  V + ++     P +V
Sbjct: 221 RAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIV 280

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T+N ++  FG+ G   ++   FK+MK  G  P   TY +L+SAYS+ G   +   I +++
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRM 340

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             + +  D   +N +++A  + G  E+  ++F  MK+  C P+ +T+ +++ AY
Sbjct: 341 LEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAY 394



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y  L+SAY + G  D+A      M
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRM 340

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +   ++  EKI AEM     + + +TY +++  Y   K+
Sbjct: 341 LE-AGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKE 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              M  + +  + SG   P    L +++        + + E  + E    G   D+ TLN
Sbjct: 400 IGRM-LALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLN 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M+ K   +++FM +  F P++ TYN ++    ++ + E+ EE  K++  +
Sbjct: 459 AMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAK 518

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP++I+Y +++ AY + G + +   I  ++  S ++ D   +N  +++Y      E  
Sbjct: 519 GIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDA 578

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            ++   M +  C P+  T+ +++  Y
Sbjct: 579 IDVVRYMIKHGCKPNQNTYNSVVDGY 604



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 6/312 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    E+A+ +F+ M S G  P    Y AL+  YG+S    EA   + +M
Sbjct: 106 TYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREM 165

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V+ C P + TY+ LI +  +        ++  +M   GI     TY T++ G+ +A K
Sbjct: 166 E-VNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGK 224

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E     F+ M  + GC P+I T N++I  +GN G   +M K + E        DI T N
Sbjct: 225 DESAMRVFAEM-RAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWN 283

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +G+ GM  ++  V   M++  F P   TYN +I  + + G  ++  + +K+M   
Sbjct: 284 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEA 343

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+  TY ++++A ++ GL  + + I  ++++     +   +  ++ AY    ++ +M
Sbjct: 344 GITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRM 403

Query: 416 GELFLTMKERHC 427
               L + E  C
Sbjct: 404 ----LALAEEIC 411



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 160/340 (47%), Gaps = 3/340 (0%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ MLGK  +   A+ L   +  DG    V  YT+L++A   +G   EA      M+   
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE-E 62

Query: 180 DCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            CKP + TY++++    K    ++ I+ +   M   G+     TYNT+I    +    EE
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             + F  M +S G  PD  T N+++  YG S   ++  +   E  + G    I T N L 
Sbjct: 123 AAAVFKDM-KSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLI 181

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y R G+  +   + + M +      V TY  ++  F +AG  E     F +M+  G K
Sbjct: 182 SAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCK 241

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN  T+ +L+  +   G   ++  +  +++NS  + D   +N +++ +GQ G   ++  +
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGV 301

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           F  MK    VP+  T+ T+I AY+  G  + A ++  +M+
Sbjct: 302 FKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRML 341



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 166/370 (44%), Gaps = 3/370 (0%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           ++  K + A+++F  +R        C TF  L+ M G   +  +   +FE + +    P 
Sbjct: 220 VRAGKDESAMRVFAEMRAAGCKPNIC-TFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPD 278

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           +  +  L++ +GQ+G+  E      +MK      P+  TY+ LI + ++   FD    I 
Sbjct: 279 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERDTYNTLISAYSRCGSFDQAMDIY 337

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   GI     TYN ++    +   +E+ E  F+ M + G C P+  T  S++ AY N
Sbjct: 338 KRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEM-KDGRCKPNELTYCSLLHAYAN 396

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              I +M     E     ++     L  L     +  +  +       ++++ F P + T
Sbjct: 397 GKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLST 456

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            N ++  +G+     K  E    M   G  P+  TY SL+  +S++    + + +L+++ 
Sbjct: 457 LNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEIL 516

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +  DT  +N +I AY + G +++   +F  M+E   VPD IT+ T + +Y A  M E
Sbjct: 517 AKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFE 576

Query: 449 AAQNLENKMI 458
            A ++   MI
Sbjct: 577 DAIDVVRYMI 586



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 37/294 (12%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  L+    +C   +QA  +++ ML  G+ P +  Y A+++A  + GL +++     +
Sbjct: 315 DTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAE 374

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK    CKP+  TY  L+ +         +  +  E+    IE  AV   T++    K  
Sbjct: 375 MKD-GRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCD 433

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-------------------------- 268
              E E +F  + +  G  PD+ TLN+M+S YG                           
Sbjct: 434 LLVEAEVAFLEL-KRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATY 492

Query: 269 ---------SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
                    S N E+ E+   E    G+K D  + N +  +Y R G   +   +   M++
Sbjct: 493 NSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRE 552

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
               P V+TYN  + ++      E   +  + M   G KPN  TY S+V  Y K
Sbjct: 553 SGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCK 606



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSV 313
           D++   S+I+A  ++G   +    + +    G K  + T N++   YG+ GM ++K++ +
Sbjct: 32  DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGL 91

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            + M+     P   TYN +I    +    E+    FK MK  G  P+ +TY +L+  Y K
Sbjct: 92  FEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGK 151

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +    +   +LR++E +        +N +ISAY + G +++  EL   M E     D  T
Sbjct: 152 SRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFT 211

Query: 434 FATMIQAYNALGMTEAAQNLENKMIA 459
           + T++  +   G  E+A  +  +M A
Sbjct: 212 YTTLLSGFVRAGKDESAMRVFAEMRA 237



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 11/252 (4%)

Query: 94  WQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           W+ + KIF  ++       RC+    T+  L+      K+  +   L E + S  ++P  
Sbjct: 365 WEQSEKIFAEMKD-----GRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHA 419

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +   LV    +  LL EA     ++K      PD+ T + ++    +   F    +IL 
Sbjct: 420 VLLKTLVLVNSKCDLLVEAEVAFLELKR-KGFSPDLSTLNAMLSIYGRRQMFTKTNEILN 478

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M+  G   S  TYN+++  + +++ FE  E     ++ + G  PD  + N++I AY  +
Sbjct: 479 FMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEIL-AKGIKPDTISYNTVIFAYCRN 537

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++  + ++E    G+  D+ T N    SY    M++    V+ +M K    P   TY
Sbjct: 538 GRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTY 597

Query: 330 NIVIETFGKAGH 341
           N V++ + K  H
Sbjct: 598 NSVVDGYCKHNH 609



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 1/163 (0%)

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++    G+ G      S+++ + K  F   V  Y  +I      G   +    FKKM+  
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 356 GMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           G KP  ITY  +++ Y K G+   K+  +   ++N+ V+ D   +N +I+   +    E+
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              +F  MK    VPD +T+  ++  Y     T+ A  +  +M
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREM 165



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++I   GK G +         +   G   +   Y SL++A    G   +   + +++E  
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 391 DVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                   +N I++ YG+ G    K+  LF  MK    +PD  T+ T+I       + E 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 450 AQNLENKMIAM 460
           A  +   M +M
Sbjct: 123 AAAVFKDMKSM 133


>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 503

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 173/372 (46%), Gaps = 5/372 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  K   W   L++F  +++Q+WY A    ++KL+ ++GK  Q   A  LF  M + G
Sbjct: 80  FEELAKHDNWLQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTG 139

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            +P   VY AL++A+     ++  L +A      MK +  CKP++ TY+IL+++  +   
Sbjct: 140 CRPDTSVYNALITAHLHSRDKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARN 199

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            + +  +  ++    +     T+N ++D YGK     EME+  + M +S  C PD+ T N
Sbjct: 200 VEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARM-KSNQCKPDLITFN 258

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG      KME+ +        +A + T N +  +YG+A + DK   V   M   
Sbjct: 259 LLIDSYGKKQEFGKMEQVFKSLLRSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTDM 318

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            + P+ VT+  +I  +G    + +  + F ++          T  +++  Y   GL  + 
Sbjct: 319 GYTPSFVTHESLIYMYGFCDCVSRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQEA 378

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           DS+  +  +  +  D+  F  +  AY +A   E + +L   M +   VP+   F   + A
Sbjct: 379 DSLFERANSIKIYPDSSTFKLLYKAYTKANQKELLDKLLKHMDKDGIVPNKRFFLDALGA 438

Query: 441 YNALGMTEAAQN 452
             +L     + N
Sbjct: 439 VASLPANSESAN 450


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 178/386 (46%), Gaps = 38/386 (9%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           +W+  +K F  +  QQ  +++    T  ++  LG+  + + A L+F+  +  G   +V V
Sbjct: 99  QWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFV 158

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y++L+ AYG+SG L +A      MK V  CKP++  Y+ +I +C+K   +    +I  EM
Sbjct: 159 YSSLICAYGRSGKLAKAVEIFEAMKVV--CKPNLVVYNAVIDACSKGGDYPTALRIFREM 216

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------------- 250
              G+    +T+NT+I   G+A ++EE +  F+ M E G                     
Sbjct: 217 LEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQM 276

Query: 251 --------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                         G  P + T ++MI  Y   G   +    + E     V+ D    N 
Sbjct: 277 HLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNT 336

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   + R G +D+  S+   M++  F   +VTYN +++++GK G   +     ++MK RG
Sbjct: 337 MVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRG 396

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             PN +TY +L+ AY K G      ++ + V+ + +  D   ++ ++    + G  ++  
Sbjct: 397 ASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEAL 456

Query: 417 ELFLTMKERHCVPDNITFATMIQAYN 442
            L   M +    P+ IT+ +++ AY 
Sbjct: 457 ALLEEMADNGIRPNVITYNSLLDAYG 482



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 132/295 (44%), Gaps = 2/295 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K   +  AL+IF  + +Q     R  TF  L+   G+  + E+   +F  M   G
Sbjct: 197 IDACSKGGDYPTALRIFREMLEQGMSPDRI-TFNTLISAAGRANRWEECDRIFAEMEERG 255

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +      Y  L++ Y + G +    + +  M   S  +P V TYS +I    K       
Sbjct: 256 IARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEA 315

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  EM    +E   + YNT++D + +   F+E  S   AM E  G   DI T N+++ 
Sbjct: 316 IALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAM-EEAGFAKDIVTYNALLD 374

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +YG  G   +      E    G   +I T + L  +Y + G +    ++   ++K    P
Sbjct: 375 SYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 434

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
            VV Y+ +++   K G  ++     ++M   G++PN ITY SL+ AY +  L+++
Sbjct: 435 DVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVR 489



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 45/342 (13%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML-SD 143
           +  A +  +W+   +IF  + ++   +    T+  L+    +  Q    + L E M  S 
Sbjct: 232 ISAAGRANRWEECDRIFAEMEERGIARDDV-TYNTLIATYCRGGQMHLGAALMETMAKSS 290

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G++PSV  Y+ ++  Y + GL  EA +   +M++  + +PD   Y+ ++    +   FD 
Sbjct: 291 GIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRN-QNVEPDGICYNTMVDIHARLGNFDE 349

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              I   M   G     VTYN ++D YGK  KF E  S    M + G   P+I T +++I
Sbjct: 350 AHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGAS-PNILTYSALI 408

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AY   G        + +    G++ D+   + L     + G  D+  ++++ M      
Sbjct: 409 DAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIR 468

Query: 324 PTVVTYNIVIETFG-----------------------------------------KAGHI 342
           P V+TYN +++ +G                                         K   +
Sbjct: 469 PNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALV 528

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                 F++M   G+KPN +T+ S+++A S    +    S+L
Sbjct: 529 LAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLL 570


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 178/386 (46%), Gaps = 38/386 (9%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           +W+  +K F  +  QQ  +++    T  ++  LG+  + + A L+F+  +  G   +V V
Sbjct: 98  QWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFV 157

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y++L+ AYG+SG L +A      MK V  CKP++  Y+ +I +C+K   +    +I  EM
Sbjct: 158 YSSLICAYGRSGKLAKAVEIFEAMKVV--CKPNLVVYNAVIDACSKGGDYPTALRIFREM 215

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------------- 250
              G+    +T+NT+I   G+A ++EE +  F+ M E G                     
Sbjct: 216 LEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQM 275

Query: 251 --------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                         G  P + T ++MI  Y   G   +    + E     V+ D    N 
Sbjct: 276 HLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNT 335

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   + R G +D+  S+   M++  F   +VTYN +++++GK G   +     ++MK RG
Sbjct: 336 MVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRG 395

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             PN +TY +L+ AY K G      ++ + V+ + +  D   ++ ++    + G  ++  
Sbjct: 396 ASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEAL 455

Query: 417 ELFLTMKERHCVPDNITFATMIQAYN 442
            L   M +    P+ IT+ +++ AY 
Sbjct: 456 ALLEEMADNGIRPNVITYNSLLDAYG 481



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 161/386 (41%), Gaps = 22/386 (5%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K   +  AL+IF  + +Q     R  TF  L+   G+  + E+   +F  M   G
Sbjct: 196 IDACSKGGDYPTALRIFREMLEQGMSPDRI-TFNTLISAAGRANRWEECDRIFAEMEERG 254

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +      Y  L++ Y + G +    + +  M   S  +P V TYS +I    K       
Sbjct: 255 IARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEA 314

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  EM    +E   + YNT++D + +   F+E  S   AM E  G   DI T N+++ 
Sbjct: 315 IALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAM-EEAGFAKDIVTYNALLD 373

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +YG  G   +      E    G   +I T + L  +Y + G +    ++   ++K    P
Sbjct: 374 SYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 433

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM------ 378
            VV Y+ +++   K G  ++     ++M   G++PN ITY SL+ AY +  L++      
Sbjct: 434 DVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPK 493

Query: 379 -------KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
                  +V  +L+     D          ++    +   V     +F  M +    P+ 
Sbjct: 494 LRFFLLPRVTMLLKPSMQDDQ-------QSLVDPKQKQALVLAAARVFREMAKNGVKPNV 546

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
           +TF++++ A +     E A NL   M
Sbjct: 547 VTFSSILNACSHCASVEDASNLLEAM 572


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 185/362 (51%), Gaps = 9/362 (2%)

Query: 102 GLLRQQQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           GLL  +Q  +A+      TF  L+  L K  Q E+A  +F  M    + P V  YT L+ 
Sbjct: 84  GLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIR 143

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
           + G  G +D        M +   C+P+++TY  ++ +     R D    I  +M   G++
Sbjct: 144 SLGTIGRIDAVMKLFESM-TAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQ 202

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
             AVTYN +ID +GK     ++E +F  + +S     ++ T NS++S+ G  G+I+ + +
Sbjct: 203 PDAVTYNILIDAFGKTG---QLERAFDFVGKSRSFTNEV-TYNSLLSSLGRKGDIQGLME 258

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            + +    G+ ++  T  IL +  G AG  + +  +   M        +VT N V++   
Sbjct: 259 LFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLS 318

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           KAG +E   E F+ MK +G+  +++TY  L++   +AG +    ++L ++E +    +  
Sbjct: 319 KAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNII 378

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +N +IS+YG+  ++     LFL MKER   P+ ++++++I+ +   G T+AA +L  +M
Sbjct: 379 TYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREM 438

Query: 458 IA 459
            A
Sbjct: 439 KA 440



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 162/332 (48%), Gaps = 5/332 (1%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Q  Q    T+  +M   G   + ++A  +F+ M+  GL+P    Y  L+ A+G++G L+ 
Sbjct: 164 QGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLER 223

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           AF  +   +S ++      TY+ L+ S  +      + ++  +M   G+  + +TY  +I
Sbjct: 224 AFDFVGKSRSFTN----EVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILI 279

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +  G A + E++   +  MV++     DI T+N+++     +G +E   + + +    G+
Sbjct: 280 ERLGWAGRVEDVWQLYLEMVDND-IKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGL 338

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
            AD  T NIL    GRAG  D   +++  M++    P ++TYN +I ++GK  ++     
Sbjct: 339 NADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATR 398

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F +MK RG+ PN ++Y SL+  + KAG      S+ R+++      +   +N +I    
Sbjct: 399 LFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLI 458

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           +AG      E    M++  C    +T + +++
Sbjct: 459 RAGRFGAAMEYLREMRDAGCQMGKVTKSLLVR 490



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 43/380 (11%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ +LG  ++ +    L E M  D  K    ++  L+  YG++ ++++A  T+       
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTK-E 59

Query: 180 DCKPDVYTYS-----------------------------------ILIKSCTKFHRFDLI 204
             +P  YTYS                                   ILI S  K  + +  
Sbjct: 60  GGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEA 119

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  +M  L +     TY  +I   G   + + +   F +M    GC P++FT +S++ 
Sbjct: 120 CNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQ-GCQPNLFTYHSVMH 178

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+G++G +++    + +    G++ D  T NIL  ++G+ G   ++    DF+ K   F 
Sbjct: 179 AFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTG---QLERAFDFVGKSRSFT 235

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VTYN ++ + G+ G I+ + E F +MK +G+  N +TY  L+     AG +  V  + 
Sbjct: 236 NEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLY 295

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ ++D+  D    N ++    +AG VE   ELF  MK +    D +T+  +I      
Sbjct: 296 LEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRA 355

Query: 445 GMTEAAQNLENKMIAMKENS 464
           G  +AA  L   ++ M+EN 
Sbjct: 356 GKLDAAGAL---LLEMEENG 372


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 4/361 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +    WQ AL+++  L   +WY    +    ++ +LG+  QP  A  LF+   S  +   
Sbjct: 55  VANTSWQRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDRAES-SIGNC 113

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKI 207
           V VY +L+S Y + G  +     +  M+    C+PD+ T++I+IK+ T+   +  L   +
Sbjct: 114 VQVYNSLMSVYARHGDWNSVQQLLCRMQD-RGCRPDLVTFNIVIKARTRGGMQEGLASSL 172

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L ++   G+    +TYNT+I       +  +    F  M +  GC PDI+T N+MIS YG
Sbjct: 173 LQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEM-QRQGCDPDIWTYNAMISVYG 231

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            +G +E     +      G   D  T N +  ++ R G  +++  +   M+        +
Sbjct: 232 RAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEI 291

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TYN +I  +GKAG   K EE + +MK  G  P+S+T+  L+    KAG + +  ++   +
Sbjct: 292 TYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDM 351

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             S V      F+ +I AY +A         +  M      PD + ++ M+  +    M 
Sbjct: 352 LKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMP 411

Query: 448 E 448
           E
Sbjct: 412 E 412



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 165/343 (48%), Gaps = 4/343 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           + +L +ML K  +  +A        + G     D    LV++Y ++G+ DEA +   DM 
Sbjct: 533 YKRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMT 592

Query: 177 SVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   +   +V   +++   C K   F   E ++  +    ++ SA+ +  II  YGK K 
Sbjct: 593 TEGLEMDAEVLQTAVMCY-CRKGFAFVAHELLIDCLHAFEVKDSAM-HVAIIASYGKLKL 650

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++  E  F  + +  G   +    ++++SAY  +GN E+  +  +     G++ +    N
Sbjct: 651 WQNAEIVFRDL-QRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACAN 709

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + +++GRAG   ++      + +    P   T+ ++   F + G++E+    +++M+  
Sbjct: 710 YVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREA 769

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+   + +L++ YS+  + +  + +++ ++ + + LD   +N +IS Y + G   K 
Sbjct: 770 GFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKA 829

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M+E  C PD  TF T+I  Y+   M + AQ L  +MI
Sbjct: 830 ALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMI 872



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 2/255 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A L+FE M   G  P +  Y A++S YG++G + EA S+I  +       PD  TY+ ++
Sbjct: 204 AILIFEEMQRQGCDPDIWTYNAMISVYGRAGRV-EAASSIFRIMQEQGFTPDAVTYNSVL 262

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +  +  R + +E+I   M         +TYNT+I  YGKA    + E  +  M E G C
Sbjct: 263 HAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC 322

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PD  T   +I   G +G + +    + +     V+  +Q  + +  +Y +A M+     
Sbjct: 323 -PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEH 381

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
               M +    P ++ Y+++++ F KA   EK    +K M   G+KP    Y  +V  + 
Sbjct: 382 TYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFY 441

Query: 373 KAGLIMKVDSILRQV 387
           +   + +++++ +++
Sbjct: 442 QKSSLAEIENLSKEM 456



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 147/351 (41%), Gaps = 35/351 (9%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           GK K  + A ++F  +   G   +   Y+AL+SAY ++G  + A   +++M + +  +P+
Sbjct: 646 GKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVA-AGLQPN 704

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
               + ++++  +  +   + +    +  +GI  ++ T+  I   + +    EE  S + 
Sbjct: 705 AACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYR 764

Query: 245 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 270
            M E+G                                  G   D+   N MIS Y   G
Sbjct: 765 QMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLG 824

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           +  K    +     +G   D  T N L   Y R  M  + ++++  M K    P + TY 
Sbjct: 825 SYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYT 884

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I  +G+    E  E  FK +   G KP++  Y  +++ Y KAG   K++ ++ Q++  
Sbjct: 885 TLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKAD 944

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                    + ++ +YG+ G   K  E+  T+ E    PD I + ++I ++
Sbjct: 945 GFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSH 995



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 176/437 (40%), Gaps = 50/437 (11%)

Query: 46  EAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLR 105
           EA   LS       A+ +IE  V++  YK L           A+   K     +    +R
Sbjct: 506 EASGKLSDARDLVHAVSSIEPSVAAHLYKRL-----------ALMLAKAGRFSEAEEEMR 554

Query: 106 QQQWY-QARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
             Q Y QA+   F K++V    +    ++A   F  M ++GL+   +V    V  Y + G
Sbjct: 555 TSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKG 614

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
               A   + D     + K D   +  +I S  K   +   E +  ++   G   +   Y
Sbjct: 615 FAFVAHELLIDCLHAFEVK-DSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAY 673

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           + ++  Y +   FE    +   MV + G  P+    N ++ A+G +G  +++ ++Y    
Sbjct: 674 SALLSAYAETGNFERATRALDNMV-AAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLP 732

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT--------------- 328
            MG+  + +T  ++  ++ R G  ++ RS+   M++  F P++                 
Sbjct: 733 EMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEI 792

Query: 329 --------------------YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
                               YN +I  + K G   K    FK M+  G  P++ T+ +L+
Sbjct: 793 DAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLI 852

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             YS+  ++ +  ++LR++  +    +   +  +ISAYG+    E    +F ++ E  C 
Sbjct: 853 MLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCK 912

Query: 429 PDNITFATMIQAYNALG 445
           PD   +  MI  Y   G
Sbjct: 913 PDATAYNVMINVYRKAG 929



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/431 (19%), Positives = 168/431 (38%), Gaps = 78/431 (18%)

Query: 99  KIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           +I G++R      ARC     T+  ++ M GK     +A  L+  M  +G  P    +T 
Sbjct: 276 RIRGMMRD-----ARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTV 330

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+   G++G ++EA +   DM   S  +P +  +S +I +  K   F   E   + M   
Sbjct: 331 LIDTLGKAGFVNEAAAMFEDMLK-SQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRA 389

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+    + Y+ ++D + KA+  E+    + AMV SG   P++     M+  +    ++ +
Sbjct: 390 GVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSG-LKPELSVYAIMVRVFYQKSSLAE 448

Query: 275 MEK-----------------------WYNEFNLM-------GVKADIQTLNILTKSYGRA 304
           +E                        +Y E  ++       GV   ++TLN +  ++  +
Sbjct: 449 IENLSKEMVQSSASLAALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEAS 508

Query: 305 GMYDKMR-----------SVMDFMQKRFFF---------------PTVVTYN-------- 330
           G     R           SV   + KR                   T  TY         
Sbjct: 509 GKLSDARDLVHAVSSIEPSVAAHLYKRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSDFL 568

Query: 331 -IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            +++ ++ +AG  ++    F  M   G++ ++    + V  Y + G       +L    +
Sbjct: 569 KVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLH 628

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT-FATMIQAYNALGMTE 448
           +  + D+     II++YG+   + +  E+     +RH    N + ++ ++ AY   G  E
Sbjct: 629 AFEVKDSAMHVAIIASYGKL-KLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFE 687

Query: 449 AAQNLENKMIA 459
            A    + M+A
Sbjct: 688 RATRALDNMVA 698



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 159/406 (39%), Gaps = 76/406 (18%)

Query: 111 QARCQ---TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           + RC    TFT L+  LGK     +A+ +FE ML   ++P++  ++A++ AY ++ +  +
Sbjct: 319 EGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSD 378

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL---AEMSYLGIECSAVTYN 224
           A  T + M   +  +PD+  YS+++     F + ++ EK +     M   G++     Y 
Sbjct: 379 AEHTYSCMLR-AGVRPDLLAYSVMLDV---FFKAEMPEKCIILYKAMVGSGLKPELSVYA 434

Query: 225 TIIDGYGKAKKFEEMESSFSAMVES-------------GGCHPD---------------- 255
            ++  + +     E+E+    MV+S             GG + +                
Sbjct: 435 IMVRVFYQKSSLAEIENLSKEMVQSSASLAALSSTLAKGGFYAEAAVVLKISFAQGVAVK 494

Query: 256 IFTLNSMISAYGNSGNIEKME---------------KWYNEFNLMGVKA--------DIQ 292
           + TLN ++ A+  SG +                     Y    LM  KA        +++
Sbjct: 495 VETLNDVLGAFEASGKLSDARDLVHAVSSIEPSVAAHLYKRLALMLAKAGRFSEAEEEMR 554

Query: 293 T------------LNILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           T            L +L  SY RAGM D+ +   +D   +       V    V+  + + 
Sbjct: 555 TSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVM-CYCRK 613

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G      E      H     +S  + +++++Y K  L    + + R ++      +T  +
Sbjct: 614 GFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAY 673

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           + ++SAY + G+ E+       M      P+      +++A+   G
Sbjct: 674 SALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAG 719


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 170/347 (48%), Gaps = 2/347 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF+ LMV  GK +  E    L E M S GLKP++  YT  +   G++G +DEA   +  
Sbjct: 230 KTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKR 289

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+    C PDV TY++LI +     + D   ++  +M     +   VTY T++D +    
Sbjct: 290 MED-DGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCG 348

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               ++  +S M E+ G  PD+ T   +++A   +GNI++     +     GV  ++ T 
Sbjct: 349 DLGRVKEFWSEM-EADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTY 407

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     R    D    + + M+     PT  TY + I+ +GK+G  +K  E F+KMK 
Sbjct: 408 NTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKI 467

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ PN +   + + + ++ G + +   I  +++++ +  D+  +N ++  Y +AG V++
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDE 527

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             EL   M E  C PD I   ++I      G  + A  +  ++  MK
Sbjct: 528 AIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMK 574



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 167/356 (46%), Gaps = 3/356 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D      K   A+++F  ++       R  T+  ++     C    +    +  M +DG
Sbjct: 306 IDALCTAGKLDDAMELFVKMKASSHKPDRV-TYITMLDKFSDCGDLGRVKEFWSEMEADG 364

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V  +T LV+A  ++G +DEAF  ++ M+      P+++TY+ LI    + +R D  
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRK-QGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +   M  LG+  +A TY   ID YGK+ + ++   +F  M +  G  P+I   N+ + 
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKM-KIRGIAPNIVACNASLY 482

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +    G + + +  +N     G+  D  T N++ K Y +AG  D+   ++  M +    P
Sbjct: 483 SLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEP 542

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++  N +I T  KAG +++  + F ++K   + P  +TY +L++   K G + +   + 
Sbjct: 543 DIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELF 602

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +  +    +T  FN I+    +  +V+   ++   M   +C+PD +TF T+I  
Sbjct: 603 ASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHG 658



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 167/358 (46%), Gaps = 5/358 (1%)

Query: 80   PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
            P+++ L    K K+  +A  +F    ++   +   +++  L+         E A  LF  
Sbjct: 759  PIIKVL---CKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTE 815

Query: 140  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
            M + G  P V  Y  L+ A+G+SG ++E F     M   S CKP+  T++I+I +  K +
Sbjct: 816  MKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQM-ICSSCKPNTITHNIIIANLVKSN 874

Query: 200  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              D    +  ++       +  TY  ++DG  K+ + EE +  F  MV+ G C P+    
Sbjct: 875  SLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYG-CRPNNAIY 933

Query: 260  NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            N +I+ +G +G++    + +      G++ D+++   L      AG  D      + +++
Sbjct: 934  NILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQ 993

Query: 320  RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               +   + YN++I+  G++  IE+    + +M+ RG+ P+  TY SL+     AG++ +
Sbjct: 994  TGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQ 1053

Query: 380  VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               +  +++   +  +   +N +I  Y  +G+ +    ++  M    C P+  TFA +
Sbjct: 1054 AGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 5/278 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILA--EMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           K D+ TY I+ K    F R  L +   A  +M   G   +A +YN +I    ++    E 
Sbjct: 156 KRDLNTYLIIFKGL--FIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREA 213

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              +  MV  G   P + T ++++ A G   + E ++    E   +G+K +I T  I  +
Sbjct: 214 LEMYRRMVLEG-LKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIR 272

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
             GRAG  D+   +M  M+     P VVTY ++I+    AG ++   E F KMK    KP
Sbjct: 273 VLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKP 332

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + +TY +++  +S  G + +V     ++E      D   F  +++A  +AG++++   L 
Sbjct: 333 DRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLL 392

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             M+++  +P+  T+ T+I     +   + A +L N M
Sbjct: 393 DVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM 430



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 155/316 (49%), Gaps = 2/316 (0%)

Query: 144  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            G+KP+++ Y  L+  +      + A++   +MK+ + C PDV+TY++L+ +  K  + + 
Sbjct: 785  GVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKN-AGCAPDVFTYNLLLDAHGKSGKINE 843

Query: 204  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            + ++  +M     + + +T+N II    K+   ++    F  +V SG   P   T   ++
Sbjct: 844  LFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLV-SGDFSPTPCTYGPLL 902

Query: 264  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 SG +E+ ++ + E    G + +    NIL   +G+ G  +    +   M +    
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 324  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            P + +Y  ++    +AG ++    YF+K+K  G+  +SI Y  ++    ++  I +  ++
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 384  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              ++++  +  D   +N +I   G AG VE+ G+L+  ++     P+  T+  +I+ Y+ 
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSM 1082

Query: 444  LGMTEAAQNLENKMIA 459
             G +++A  +  +M+ 
Sbjct: 1083 SGNSDSAYAVYKRMMV 1098



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 38/287 (13%)

Query: 214  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            LG++ +  +YN +I+G+      E   + F+ M ++ GC PD+FT N ++ A+G SG I 
Sbjct: 784  LGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEM-KNAGCAPDVFTYNLLLDAHGKSGKIN 842

Query: 274  KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT----- 328
            ++ + Y +      K +  T NI+  +  ++   DK   +   +    F PT  T     
Sbjct: 843  ELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLL 902

Query: 329  ------------------------------YNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                                          YNI+I  FGK G +    E FK+M   G++
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 359  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            P+  +Y SLV    +AG +        +++ + + LD+  +N +I   G++  +E+   L
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 419  FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL--ENKMIAMKEN 463
            +  M+ R   PD  T+ ++I      GM E A  L  E + I ++ N
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPN 1069



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 157/376 (41%), Gaps = 40/376 (10%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+  L K  + ++A  +F  +    L P+V  Y  L++  G+ G +  A      M   +
Sbjct: 550 LINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTG-N 608

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C P+  T++ ++    K    DL  K+L +M+ +      +T+NTII G    K+  + 
Sbjct: 609 GCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDA 668

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTL---- 294
              F  M +     PD  TL +++     +G +E   K   +F + +GV  D +      
Sbjct: 669 IWLFHQMKKM--LTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLM 726

Query: 295 -NILTKS-------YGR---AGMYDKMRSVM---------------------DFMQKRFF 322
             ILT++       +G     G   K  SV+                      F ++   
Sbjct: 727 GGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGV 786

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            PT+ +YN +IE F    + E     F +MK+ G  P+  TY  L+ A+ K+G I ++  
Sbjct: 787 KPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFE 846

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  Q+  S    +T   N II+   ++  ++K  +LF  +      P   T+  ++    
Sbjct: 847 LYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLL 906

Query: 443 ALGMTEAAQNLENKMI 458
             G  E A+ L  +M+
Sbjct: 907 KSGRLEEAKELFEEMV 922



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 150/404 (37%), Gaps = 69/404 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF------ 169
           T+  L+  LGK  Q ++A  LF  M  +G  P+   +  ++    ++  +D A       
Sbjct: 581 TYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKM 640

Query: 170 STINDM----------------KSVSDC-----------KPDVYTYSILIKSCTK----- 197
           +T+N M                K VSD             PD  T   L+    K     
Sbjct: 641 TTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLME 700

Query: 198 ---------FHRFDL-IEKILAEMSYLGIECSAVTYNTIIDG------------------ 229
                     HR  + +++   E    GI   A T  TI+ G                  
Sbjct: 701 DAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPI 760

Query: 230 ---YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
                K K+    +S F    +  G  P + + N +I  +    N E     + E    G
Sbjct: 761 IKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAG 820

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              D+ T N+L  ++G++G  +++  + + M      P  +T+NI+I    K+  ++K  
Sbjct: 821 CAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKAL 880

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           + F  +      P   TY  L+    K+G + +   +  ++ +     +   +N +I+ +
Sbjct: 881 DLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGF 940

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G+ GDV    ELF  M      PD  ++ +++      G  + A
Sbjct: 941 GKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDA 984



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 282 FNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           FNLM    +K D+ T  I+ K     G   +       M++  F     +YN +I    +
Sbjct: 147 FNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQ 206

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           +G   +  E +++M   G+KP+  T+ +L+ A  K      V S+L ++E+  +  +   
Sbjct: 207 SGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYT 266

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +   I   G+AG +++   +   M++  C PD +T+  +I A    G  + A  L  KM 
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK 326

Query: 459 A 459
           A
Sbjct: 327 A 327


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 178/342 (52%), Gaps = 11/342 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D  +K    Q A++IF  +++      RCQ    T+T L+ + GK  +   A  +F  M
Sbjct: 245 IDGLMKGGDTQKAVEIFERMKRD-----RCQPSTATYTMLINLYGKASKSYMALKVFHEM 299

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            S   KP++  +TALV+A+ + GL ++A      ++  +  +PDVY Y+ L+++ ++   
Sbjct: 300 RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE-AGLEPDVYAYNALMEAYSRAGF 358

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                +I + M ++G E    +YN ++D YG+A   E+ ++ F  M +  G  P + +  
Sbjct: 359 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVM-KRLGITPTMKSHM 417

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            ++SAY  +G + K E+  N+ +  G+K D   LN +   YGR G ++KM  V+  M+K 
Sbjct: 418 LLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKG 477

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            +   + TYNI+I  +G+AG   +MEE F+ +  R + P+ +T+ S + AYS+     + 
Sbjct: 478 PYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRC 537

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
             +  ++ ++    D      ++SA      ++++  +  TM
Sbjct: 538 LEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 579



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 168/336 (50%), Gaps = 6/336 (1%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+         E+A  +F  M   G  PS  VY A +    + G   
Sbjct: 196 EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQ 255

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A      MK    C+P   TY++LI    K  +  +  K+  EM     + +  T+  +
Sbjct: 256 KAVEIFERMKR-DRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTAL 314

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  + E+G   PD++  N+++ AY  +G      + ++    MG
Sbjct: 315 VNAFAREGLCEKAEEIFEQLQEAG-LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMG 373

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NI+  +YGRAG+++  ++V + M++    PT+ ++ +++  + +AG + K E
Sbjct: 374 CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCE 433

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E   +M   G+KP++    S+++ Y + G   K++ +L  +E      D   +N +I+ Y
Sbjct: 434 EIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIY 493

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           G+AG   +M ELF ++  R+ +PD +T+ + I AY+
Sbjct: 494 GRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYS 529



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++      P V  Y  L+ AYGQ  L  +A ST  ++   + C P   TY++L+K+    
Sbjct: 158 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE-ARCVPTEDTYALLLKAYCTS 216

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 229
              +  E + AEM   G   SAV YN  IDG                             
Sbjct: 217 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 276

Query: 230 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
                 YGKA K       F  M  S  C P+I T  ++++A+   G  EK E+ + +  
Sbjct: 277 TMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 335

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 336 EAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 395

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             +  F+ MK  G+ P   ++  L+SAYS+AG + K + I+ Q+  S +  DT   N ++
Sbjct: 396 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 455

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           + YG+ G  EKM E+   M++     D  T+  +I  Y   G
Sbjct: 456 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 497



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 154/318 (48%), Gaps = 4/318 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K    ++A  +FE M  D  +PS   YT L++ YG++     A    ++M+S   CKP
Sbjct: 248 LMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRS-QKCKP 306

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ T++ L+ +  +    +  E+I  ++   G+E     YN +++ Y +A  F    +  
Sbjct: 307 NICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG-FPYGAAEI 365

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            ++++  GC PD  + N M+ AYG +G  E  +  +     +G+   +++  +L  +Y R
Sbjct: 366 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 425

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI- 362
           AG   K   +++ M K    P     N ++  +G+ G  EKMEE    M+ +G  P  I 
Sbjct: 426 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADIS 484

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L++ Y +AG   +++ + R +   ++I D   +   I AY +     +  E+F  M
Sbjct: 485 TYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEM 544

Query: 423 KERHCVPDNITFATMIQA 440
            +  C PD  T   ++ A
Sbjct: 545 IDAGCYPDGGTAKVLLSA 562



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 3/223 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A +IF L++       R  ++  ++   G+    E A  +FEVM   G+ P++  +  L+
Sbjct: 362 AAEIFSLMQHMGCEPDRA-SYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLL 420

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           SAY ++G + +    +N M   S  KPD +  + ++    +  +F+ +E++L  M     
Sbjct: 421 SAYSRAGKVAKCEEIVNQMHK-SGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPY 479

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN +I+ YG+A  F  ME  F ++  +    PD+ T  S I AY       +  
Sbjct: 480 PADISTYNILINIYGRAGFFARMEELFRSL-PARNLIPDVVTWTSRIGAYSRRKQYNRCL 538

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + + E    G   D  T  +L  +        ++ +V+  M K
Sbjct: 539 EVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHK 581


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 181/379 (47%), Gaps = 12/379 (3%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF---EVMLSD 143
           +++ Q+ WQ AL++F  L  + W+    +    ++ +LG+  Q   A  +F   E  + D
Sbjct: 164 KSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD 223

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-- 201
                V VY A++  Y +SG   +A   ++ M+    C PD+ +++ LI +  K      
Sbjct: 224 ----RVQVYNAMMGVYSRSGKFSKAQELVDAMRQ-RGCVPDLISFNTLINARLKSGGLTP 278

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +L  ++L  +   G+   A+TYNT++    +    +     F  M E+  C PD++T N+
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM-EAHRCQPDLWTYNA 337

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MIS YG  G   + E+ + E  L G   D  T N L  ++ R    +K++ V   MQK  
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKV 380
           F    +TYN +I  +GK G ++   + +K MK   G  P++ITY  L+ +  KA   ++ 
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +++ ++ +  +      ++ +I  Y +AG  E+  + F  M      PDN+ ++ M+  
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDV 517

Query: 441 YNALGMTEAAQNLENKMIA 459
                 T  A  L   MI+
Sbjct: 518 LLRGNETRKAWGLYRDMIS 536



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 160/352 (45%), Gaps = 3/352 (0%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            KQK WQ A  + G LRQ        +T+  LM    +C   E+A  +F  M+ DG  P+V
Sbjct: 764  KQKLWQKAESVVGNLRQSG-RTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTV 822

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +    L+ A    G L+E +  + +++ +   K    +  +++ +  +      ++KI +
Sbjct: 823  ESINILLHALCVDGRLEELYVVVEELQDMG-FKISKSSILLMLDAFARAGNIFEVKKIYS 881

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   +   Y  +I+   K K+  + E   S M E      ++   NSM+  Y   
Sbjct: 882  SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEM-EEANFKVELAIWNSMLKMYTAI 940

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             + +K  + Y      G++ D  T N L   Y R    ++   +M  M+     P + TY
Sbjct: 941  EDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000

Query: 330  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
              +I  FGK   +E+ E+ F+++  +G+K +   Y +++     +G   K + +L+ ++N
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 390  SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + +       + ++ +Y  +G+ ++  ++   +K+       + ++++I AY
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AE       CS + Y  II+ YGK K +++ ES    + +SG   PD+ T NS++SAY  
Sbjct: 742 AETKGFHFACSPM-YTDIIEAYGKQKLWQKAESVVGNLRQSGRT-PDLKTWNSLMSAYAQ 799

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  E+    +N     G    ++++NIL  +    G  +++  V++ +Q   F  +  +
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
             ++++ F +AG+I ++++ +  MK  G  P    Y  ++    K   +   + ++ ++E
Sbjct: 860 ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++  ++   +N ++  Y    D +K  +++  +KE    PD  T+ T+I  Y
Sbjct: 920 EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 148/337 (43%), Gaps = 2/337 (0%)

Query: 117  FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            +T ++   GK K  ++A  +   +   G  P +  + +L+SAY Q G  + A +  N M 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                  P V + +IL+ +     R + +  ++ E+  +G + S  +   ++D + +A   
Sbjct: 815  R-DGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873

Query: 237  EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             E++  +S+M ++ G  P I     MI        +   E   +E      K ++   N 
Sbjct: 874  FEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 297  LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
            + K Y     Y K   V   +++    P   TYN +I  + +    E+     ++M++ G
Sbjct: 933  MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992

Query: 357  MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            + P   TY SL+SA+ K   + + + +  ++ +  + LD  F++ ++     +G   K  
Sbjct: 993  LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 417  ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +L   MK     P   T   ++ +Y++ G  + A+ +
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 127/294 (43%), Gaps = 2/294 (0%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
            LA+++  ++R     +    T+  L+    +    + A  +FE M +   +P +  Y A
Sbjct: 279 NLAVELLDMVRNSG-LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNA 337

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++S YG+ GL  EA     +++ +    PD  TY+ L+ +  +    + ++++  +M  +
Sbjct: 338 MISVYGRCGLAAEAERLFMELE-LKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G     +TYNTII  YGK  + +     +  M    G +PD  T   +I + G +    +
Sbjct: 397 GFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVE 456

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
                +E   +G+K  +QT + L   Y +AG  ++       M +    P  + Y+++++
Sbjct: 457 AAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLD 516

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
              +     K    ++ M   G  P+   Y  ++    K      +   +R +E
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 50/374 (13%)

Query: 132  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---DCKPDVYTY 188
            +AS +F  +   G + S  V  ++V  Y + G  + A   +N  ++      C P    Y
Sbjct: 699  EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MY 755

Query: 189  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            + +I++  K   +   E ++  +   G      T+N+++  Y +   +E   + F+ M+ 
Sbjct: 756  TDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR 815

Query: 249  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
             G   P + ++N ++ A    G +E++     E   MG K    ++ ++  ++ RAG   
Sbjct: 816  DGP-SPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 309  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME---------------------- 346
            +++ +   M+   + PT+  Y ++IE   K   +   E                      
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 347  -------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SD 391
                         + ++++K  G++P+  TY +L+  Y +     +   +++Q+ N   D
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 392  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              LDT  +  +ISA+G+   +E+  +LF  +  +    D   + TM++     G    A+
Sbjct: 995  PKLDT--YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 452  NLENKMIAMKENSG 465
                K++ M +N+G
Sbjct: 1053 ----KLLQMMKNAG 1062



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 348
           +Q  N +   Y R+G + K + ++D M++R   P ++++N +I    K+G +      E 
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +++ G++P++ITY +L+SA S+   +     +   +E      D   +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            G   +   LF+ ++ +   PD +T+ +++ A+     TE  + +  +M  M
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 132/291 (45%), Gaps = 8/291 (2%)

Query: 110  YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
            Y    + +  ++ +L K K+   A ++   M     K  + ++ +++  Y     +++  
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTA---IEDYK 944

Query: 170  STINDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
             T+   + + +   +PD  TY+ LI    +  R +    ++ +M  LG++    TY ++I
Sbjct: 945  KTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004

Query: 228  DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
              +GK K  E+ E  F  ++ S G   D    ++M+    +SG+  K EK        G+
Sbjct: 1005 SAFGKQKCLEQAEQLFEELL-SKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGI 1063

Query: 288  KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
            +  + T+++L  SY  +G   +   V+  ++      T + Y+ VI+ + ++       E
Sbjct: 1064 EPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIE 1123

Query: 348  YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               +MK  G++P+   +   V A S +   ++V  +L+ +E  D+  D P 
Sbjct: 1124 RLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALE--DIGFDLPI 1172


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 178/342 (52%), Gaps = 11/342 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D  +K    Q A++IF  +++      RCQ    T+T L+ + GK  +   A  +F  M
Sbjct: 283 IDGLMKGGDTQKAVEIFERMKRD-----RCQPSTATYTMLINLYGKASKSYMALKVFHEM 337

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            S   KP++  +TALV+A+ + GL ++A      ++  +  +PDVY Y+ L+++ ++   
Sbjct: 338 RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE-AGLEPDVYAYNALMEAYSRAGF 396

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                +I + M ++G E    +YN ++D YG+A   E+ ++ F  M +  G  P + +  
Sbjct: 397 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVM-KRLGITPTMKSHM 455

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            ++SAY  +G + K E+  N+ +  G+K D   LN +   YGR G ++KM  V+  M+K 
Sbjct: 456 LLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKG 515

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            +   + TYNI+I  +G+AG   +MEE F+ +  R + P+ +T+ S + AYS+     + 
Sbjct: 516 PYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRC 575

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
             +  ++ ++    D      ++SA      ++++  +  TM
Sbjct: 576 LEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 617



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 168/336 (50%), Gaps = 6/336 (1%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+         E+A  +F  M   G  PS  VY A +    + G   
Sbjct: 234 EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQ 293

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A      MK    C+P   TY++LI    K  +  +  K+  EM     + +  T+  +
Sbjct: 294 KAVEIFERMKR-DRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTAL 352

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  + E+G   PD++  N+++ AY  +G      + ++    MG
Sbjct: 353 VNAFAREGLCEKAEEIFEQLQEAG-LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMG 411

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NI+  +YGRAG+++  ++V + M++    PT+ ++ +++  + +AG + K E
Sbjct: 412 CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCE 471

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E   +M   G+KP++    S+++ Y + G   K++ +L  +E      D   +N +I+ Y
Sbjct: 472 EIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIY 531

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           G+AG   +M ELF ++  R+ +PD +T+ + I AY+
Sbjct: 532 GRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYS 567



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++      P V  Y  L+ AYGQ  L  +A ST  ++   + C P   TY++L+K+    
Sbjct: 196 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE-ARCVPTEDTYALLLKAYCTS 254

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 229
              +  E + AEM   G   SAV YN  IDG                             
Sbjct: 255 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 314

Query: 230 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
                 YGKA K       F  M  S  C P+I T  ++++A+   G  EK E+ + +  
Sbjct: 315 TMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 373

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 374 EAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 433

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             +  F+ MK  G+ P   ++  L+SAYS+AG + K + I+ Q+  S +  DT   N ++
Sbjct: 434 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 493

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           + YG+ G  EKM E+   M++     D  T+  +I  Y   G
Sbjct: 494 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 535



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 154/318 (48%), Gaps = 4/318 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K    ++A  +FE M  D  +PS   YT L++ YG++     A    ++M+S   CKP
Sbjct: 286 LMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRS-QKCKP 344

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ T++ L+ +  +    +  E+I  ++   G+E     YN +++ Y +A  F    +  
Sbjct: 345 NICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG-FPYGAAEI 403

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            ++++  GC PD  + N M+ AYG +G  E  +  +     +G+   +++  +L  +Y R
Sbjct: 404 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 463

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI- 362
           AG   K   +++ M K    P     N ++  +G+ G  EKMEE    M+ +G  P  I 
Sbjct: 464 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADIS 522

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L++ Y +AG   +++ + R +   ++I D   +   I AY +     +  E+F  M
Sbjct: 523 TYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEM 582

Query: 423 KERHCVPDNITFATMIQA 440
            +  C PD  T   ++ A
Sbjct: 583 IDAGCYPDGGTAKVLLSA 600



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 3/223 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A +IF L++       R  ++  ++   G+    E A  +FEVM   G+ P++  +  L+
Sbjct: 400 AAEIFSLMQHMGCEPDRA-SYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLL 458

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           SAY ++G + +    +N M   S  KPD +  + ++    +  +F+ +E++L  M     
Sbjct: 459 SAYSRAGKVAKCEEIVNQMHK-SGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPY 517

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN +I+ YG+A  F  ME  F ++  +    PD+ T  S I AY       +  
Sbjct: 518 PADISTYNILINIYGRAGFFARMEELFRSL-PARNLIPDVVTWTSRIGAYSRRKQYNRCL 576

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + + E    G   D  T  +L  +        ++ +V+  M K
Sbjct: 577 EVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHK 619


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 168/355 (47%), Gaps = 6/355 (1%)

Query: 107 QQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           ++  Q  CQ     +  L+   G+  Q + A  +F  M   G +P    Y  LV+A G++
Sbjct: 89  KKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKA 148

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           G + EA S  + M       P++ TY++L+ +  K  + D+   + AEM   G + S VT
Sbjct: 149 GRVQEARSFFDAMLE-RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT 207

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN ++D    A +       F  M    GC PD +T +++++  G SG +E+  K + E 
Sbjct: 208 YNILLDALCSAGRVGAARKLFHKMT-GDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM 266

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              GV  D+   N L  +  +AG  D++  +M  M ++ F P   ++N +++  GKA   
Sbjct: 267 VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKP 326

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           +   E F +M   G KP+ I+Y  L+ +Y++ G   +   +L ++  +  I +T  +N +
Sbjct: 327 DAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSL 386

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           I      G V++   +   M+   C PD +T+  ++      G  + A  L  +M
Sbjct: 387 IHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQM 441



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 163/325 (50%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  LGK  + ++A   F+ ML  GL P++  Y  L+ A+ + G LD A     +M
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     +P V TY+IL+ +     R     K+  +M+  G    + TY+T+++G GK+ +
Sbjct: 197 KR-RGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGR 255

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE    F  MV+ G    D+   NS+++    +GN++++ K   E +  G   D  + N
Sbjct: 256 VEEAHKVFREMVDRG-VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFN 314

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  + G+A   D  R V   M +    P +++YNI+I+++ + G   +  +  ++M   
Sbjct: 315 TIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEA 374

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P + TY SL+   +  G + +  ++L ++E +    D   +N ++   G+ G+ ++ 
Sbjct: 375 GFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRA 434

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             LF  MK++   PD +++A  I  
Sbjct: 435 ARLFQQMKDKGVEPDTLSYAVRIDG 459



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 168/339 (49%), Gaps = 2/339 (0%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++V+L      +    L + M+++G     +    L++AYG+     +AF   N  +S +
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFA 60

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C P V+ ++ LI        F+  E +  ++   G +     YN +I  +G++ + +  
Sbjct: 61  -CSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSA 119

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M +  G  PD +T   +++A G +G +++   +++     G+  +I T N+L  
Sbjct: 120 MEMFREM-KIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMD 178

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           ++ + G  D    +   M++R F P+VVTYNI+++    AG +    + F KM   G  P
Sbjct: 179 AFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSP 238

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +S TY +LV+   K+G + +   + R++ +  V +D   +N +++   +AG+++++ +L 
Sbjct: 239 DSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLM 298

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M  +   PD  +F T++ A       +AA+ +  +M+
Sbjct: 299 KEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV 337



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 3/334 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  +  +AL +F  ++++  +Q    T+  L+  L    +   A  LF  M  DG
Sbjct: 177 MDAFRKVGQLDMALGLFAEMKRR-GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG 235

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    Y+ LV+  G+SG ++EA     +M        D+  Y+ L+ +  K    D +
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD-RGVAVDLVNYNSLLATLAKAGNMDRV 294

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K++ EMS  G    A ++NTI+D  GKA K +     F+ MVES GC PD+ + N +I 
Sbjct: 295 WKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVES-GCKPDLISYNILID 353

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +Y   G+  +  +   E    G   + +T N L       G  D+  +V++ M+     P
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            VVTYN +++  GK G  ++    F++MK +G++P++++Y   +   +    + +   + 
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLF 473

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           + ++     +D   +  +I A  +AGD E   +L
Sbjct: 474 KDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQL 507



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 160/346 (46%), Gaps = 2/346 (0%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
           R  T  KL+   G+  +   A  LF    S    P+V  +T L+     SG  + A    
Sbjct: 29  RPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVY 88

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             +     C+ D + Y++LI+   +  + D   ++  EM   G E    TY  +++  GK
Sbjct: 89  KKLVQ-KGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGK 147

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A + +E  S F AM+E G   P+I T N ++ A+   G ++     + E    G +  + 
Sbjct: 148 AGRVQEARSFFDAMLERG-LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVV 206

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T NIL  +   AG     R +   M      P   TY+ ++   GK+G +E+  + F++M
Sbjct: 207 TYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM 266

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             RG+  + + Y SL++  +KAG + +V  +++++       D   FN I+ A G+A   
Sbjct: 267 VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKP 326

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +   E+F  M E  C PD I++  +I +Y   G    A+ +  +M+
Sbjct: 327 DAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMV 372



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +LM MLGK  + ++A+ LF+ M   G++P    Y   +        LDEA     DM
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
           K+V  C  D   Y ILI++  +    +L  ++  E  ++ +E
Sbjct: 477 KAVG-CPVDKAMYRILIRAAHRAGDTELEAQLKHESQFMPVE 517


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 175/343 (51%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +  +  + + A+     M   GL P   +YT ++  + ++GL+ EA    ++M
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +   C PDV TY+ L+    K  R    E++L EM   G+     T+ T+I GY +   
Sbjct: 361 VAFG-CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGN 419

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  + +     PDI T N++I      G++ K  + +++ +   +  +  T +
Sbjct: 420 IEKALQFFDTISDQR-LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYS 478

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL  S+   G  D   + +D M  +   P ++TYN +I+ + ++G++ K +++  KM+H 
Sbjct: 479 ILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD 538

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+ ITY +L+  Y K G + +  ++L+ +EN +V  D   +N IIS +   G++++ 
Sbjct: 539 KVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEA 598

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ++  M  R   PD  T+ +MI  +   G ++ +  L ++M+
Sbjct: 599 DWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEML 641



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 174/372 (46%), Gaps = 16/372 (4%)

Query: 102 GLLRQQQWYQAR--------------CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GLLR  +W +AR               ++F  L+    +  + E+A   ++ M    + P
Sbjct: 238 GLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTP 297

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            V  ++ L+  + + G +D A   + +M+      PD   Y+++I    +        ++
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMREFG-LMPDGVIYTMVIGGFCRAGLMLEALRV 356

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             EM   G     VTYNT+++G  K ++  + E   + M E G   PD+ T  ++I  Y 
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG-VPPDLCTFTTLIHGYC 415

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             GNIEK  ++++  +   ++ DI T N L     R G   K   + D M  R  FP  V
Sbjct: 416 RDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHV 475

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY+I+I++  + G ++    +  +M ++G+ PN +TY S++  Y ++G + K    L ++
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            +  V+ D   +N +I  Y + G + +   L   M+  +  PD +T+  +I  ++  G  
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595

Query: 448 EAAQNLENKMIA 459
           + A  +  KM A
Sbjct: 596 QEADWVYKKMGA 607



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 143/312 (45%), Gaps = 2/312 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P V  +  +V A  ++G ++ A + I+ M S    KP + TY+ ++K   +  R+D   +
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVS-KGIKPGLVTYNSVLKGLLRNGRWDKARE 250

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +   M   G+     ++N +I G+ +A + EE    +  M       PD+ + + +I  +
Sbjct: 251 VFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM-RGRRVTPDVVSFSCLIGLF 309

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G ++   ++  E    G+  D     ++   + RAG+  +   V D M      P V
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTYN ++    K   +   EE   +MK RG+ P+  T+ +L+  Y + G I K       
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +  +  D   +N +I    + GD+ K  EL+  M  R   P+++T++ +I ++   G 
Sbjct: 430 ISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489

Query: 447 TEAAQNLENKMI 458
            + A    ++M+
Sbjct: 490 VDNAFAFLDEMV 501



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 134/272 (49%), Gaps = 1/272 (0%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S+ + + YT +I++ S  K  +F  ++ +++EM    +    VT+N ++D   +A   E 
Sbjct: 153 SNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEA 212

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             +   +MV S G  P + T NS++     +G  +K  + +   +  GV  D+++ N+L 
Sbjct: 213 AMALIDSMV-SKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLI 271

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             + RAG  ++       M+ R   P VV+++ +I  F + G ++   EY ++M+  G+ 
Sbjct: 272 GGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLM 331

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+ + Y  ++  + +AGL+++   +  ++     + D   +N +++   +   +    EL
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEEL 391

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              MKER   PD  TF T+I  Y   G  E A
Sbjct: 392 LNEMKERGVPPDLCTFTTLIHGYCRDGNIEKA 423



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           TLNI+  SY +   + ++ +V+  M+KR  FP VVT+N++++   +AG +E        M
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G+KP  +TY S++    + G   K   + R ++   V  D   FN +I  + +AG++
Sbjct: 221 VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 454
           E+    +  M+ R   PD ++F+ +I  +   G M  AA+ L 
Sbjct: 281 EEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 181/379 (47%), Gaps = 12/379 (3%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF---EVMLSD 143
           +++ Q+ WQ AL++F  L  + W+    +    ++ +LG+  Q   A  +F   E  + D
Sbjct: 164 KSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD 223

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-- 201
                V VY A++  Y +SG   +A   ++ M+    C PD+ +++ LI +  K      
Sbjct: 224 ----RVQVYNAMMGVYSRSGKFSKAQELVDAMRQ-RGCVPDLISFNTLINARLKSGGLTP 278

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +L  ++L  +   G+   A+TYNT++    +    +     F  M E+  C PD++T N+
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM-EAHRCQPDLWTYNA 337

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MIS YG  G   + E+ + E  L G   D  T N L  ++ R    +K++ V   MQK  
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKV 380
           F    +TYN +I  +GK G ++   + +K MK   G  P++ITY  L+ +  KA   ++ 
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +++ ++ +  +      ++ +I  Y +AG  E+  + F  M      PDN+ ++ M+  
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDV 517

Query: 441 YNALGMTEAAQNLENKMIA 459
                 T  A  L   MI+
Sbjct: 518 LLRGNETRKAWGLYRDMIS 536



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 160/352 (45%), Gaps = 3/352 (0%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            KQK WQ A  + G LRQ        +T+  LM    +C   E+A  +F  M+ DG  P+V
Sbjct: 764  KQKLWQKAESVVGNLRQSG-RTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTV 822

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +    L+ A    G L+E +  + +++ +   K    +  +++ +  +      ++KI +
Sbjct: 823  ESINILLHALCVDGRLEELYVVVEELQDMG-FKISKSSILLMLDAFARAGNIFEVKKIYS 881

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   +   Y  +I+   K K+  + E   S M E      ++   NSM+  Y   
Sbjct: 882  SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEM-EEANFKVELAIWNSMLKMYTAI 940

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             + +K  + Y      G++ D  T N L   Y R    ++   +M  M+     P + TY
Sbjct: 941  EDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000

Query: 330  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
              +I  FGK   +E+ E+ F+++  +G+K +   Y +++     +G   K + +L+ ++N
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 390  SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + +       + ++ +Y  +G+ ++  ++   +K+       + ++++I AY
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AE       CS + Y  II+ YGK K +++ ES    + +SG   PD+ T NS++SAY  
Sbjct: 742 AETKGFHFACSPM-YTDIIEAYGKQKLWQKAESVVGNLRQSGRT-PDLKTWNSLMSAYAQ 799

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  E+    +N     G    ++++NIL  +    G  +++  V++ +Q   F  +  +
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
             ++++ F +AG+I ++++ +  MK  G  P    Y  ++    K   +   + ++ ++E
Sbjct: 860 ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++  ++   +N ++  Y    D +K  +++  +KE    PD  T+ T+I  Y
Sbjct: 920 EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 148/337 (43%), Gaps = 2/337 (0%)

Query: 117  FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            +T ++   GK K  ++A  +   +   G  P +  + +L+SAY Q G  + A +  N M 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                  P V + +IL+ +     R + +  ++ E+  +G + S  +   ++D + +A   
Sbjct: 815  R-DGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873

Query: 237  EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             E++  +S+M ++ G  P I     MI        +   E   +E      K ++   N 
Sbjct: 874  FEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 297  LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
            + K Y     Y K   V   +++    P   TYN +I  + +    E+     ++M++ G
Sbjct: 933  MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992

Query: 357  MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            + P   TY SL+SA+ K   + + + +  ++ +  + LD  F++ ++     +G   K  
Sbjct: 993  LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 417  ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +L   MK     P   T   ++ +Y++ G  + A+ +
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 2/293 (0%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           LA+++  ++R     +    T+  L+    +    + A  +FE M +   +P +  Y A+
Sbjct: 280 LAVELLDMVRNSG-LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           +S YG+ GL  EA     +++ +    PD  TY+ L+ +  +    + ++++  +M  +G
Sbjct: 339 ISVYGRCGLAAEAERLFMELE-LKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
                +TYNTII  YGK  + +     +  M    G +PD  T   +I + G +    + 
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
               +E   +G+K  +QT + L   Y +AG  ++       M +    P  + Y+++++ 
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDV 517

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
             +     K    ++ M   G  P+   Y  ++    K      +   +R +E
Sbjct: 518 LLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 50/374 (13%)

Query: 132  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---DCKPDVYTY 188
            +AS +F  +   G + S  V  ++V  Y + G  + A   +N  ++      C P    Y
Sbjct: 699  EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MY 755

Query: 189  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            + +I++  K   +   E ++  +   G      T+N+++  Y +   +E   + F+ M+ 
Sbjct: 756  TDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR 815

Query: 249  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
             G   P + ++N ++ A    G +E++     E   MG K    ++ ++  ++ RAG   
Sbjct: 816  DGP-SPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 309  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME---------------------- 346
            +++ +   M+   + PT+  Y ++IE   K   +   E                      
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 347  -------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SD 391
                         + ++++K  G++P+  TY +L+  Y +     +   +++Q+ N   D
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 392  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              LDT  +  +ISA+G+   +E+  +LF  +  +    D   + TM++     G    A+
Sbjct: 995  PKLDT--YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 452  NLENKMIAMKENSG 465
                K++ M +N+G
Sbjct: 1053 ----KLLQMMKNAG 1062



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 348
           +Q  N +   Y R+G + K + ++D M++R   P ++++N +I    K+G +      E 
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +++ G++P++ITY +L+SA S+   +     +   +E      D   +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            G   +   LF+ ++ +   PD +T+ +++ A+     TE  + +  +M  M
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 132/291 (45%), Gaps = 8/291 (2%)

Query: 110  YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
            Y    + +  ++ +L K K+   A ++   M     K  + ++ +++  Y     +++  
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTA---IEDYK 944

Query: 170  STINDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
             T+   + + +   +PD  TY+ LI    +  R +    ++ +M  LG++    TY ++I
Sbjct: 945  KTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004

Query: 228  DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
              +GK K  E+ E  F  ++ S G   D    ++M+    +SG+  K EK        G+
Sbjct: 1005 SAFGKQKCLEQAEQLFEELL-SKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGI 1063

Query: 288  KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
            +  + T+++L  SY  +G   +   V+  ++      T + Y+ VI+ + ++       E
Sbjct: 1064 EPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIE 1123

Query: 348  YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               +MK  G++P+   +   V A S +   ++V  +L+ +E  D+  D P 
Sbjct: 1124 RLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALE--DIGFDLPI 1172


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 178/362 (49%), Gaps = 3/362 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F  L+Q + Y      +T L+ +L + ++ ++   LFE M  +G + +   Y  ++
Sbjct: 196 ALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVML 255

Query: 157 SAYGQSG-LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
             YG+ G   D   S   +MK + +  PD YTY+ +I +C +        ++  EM   G
Sbjct: 256 DLYGKRGDSWDRIQSLFQEMKDL-EISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAG 314

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              + VTYN ++D YGK    +E  S     +E+ G  P+I T N +I+AY  +G  ++ 
Sbjct: 315 CCPNRVTYNALLDVYGKGGMHKEA-SELLVEMEAAGISPNIVTYNELIAAYARAGLCDEA 373

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                     G+  D  T   L  ++ RA  Y+K       M+K    P +VTYNI+I+ 
Sbjct: 374 AALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDI 433

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +G+   ++ M + FK M+ +   P+ +T+ SL+ ++   G++ +V ++ R+++ +  +  
Sbjct: 434 YGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPG 493

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FN +I  YG+ G V+   +++  +      P   TFA ++ +    G  +  + +  
Sbjct: 494 VDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQ 553

Query: 456 KM 457
           +M
Sbjct: 554 EM 555



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 176/369 (47%), Gaps = 37/369 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q KW+ AL++F  +R+   ++ R      ++ +LG  +Q   A  LFE +  D      
Sbjct: 153 RQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQD------ 206

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
                            E++S             DVY Y+ LI   ++  RFD    +  
Sbjct: 207 -----------------ESYSL------------DVYAYTSLISILSRARRFDEGITLFE 237

Query: 210 EMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            M   G   +AVTYN ++D YGK    ++ ++S F  M +     PD +T N+MI+A   
Sbjct: 238 TMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLE-ISPDDYTYNTMITACIQ 296

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           + + ++  + + E    G   +  T N L   YG+ GM+ +   ++  M+     P +VT
Sbjct: 297 NSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVT 356

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I  + +AG  ++     K +  +G+ P+  TYC+L+SA+++A    K      ++ 
Sbjct: 357 YNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMR 416

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            ++   +   +N +I  YG+   ++ M ++F  M+E++C PD +T+ ++++++   GM  
Sbjct: 417 KTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLT 476

Query: 449 AAQNLENKM 457
              N+  +M
Sbjct: 477 EVSNVFREM 485



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 189/444 (42%), Gaps = 74/444 (16%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           I+    Q AL++F  +++      R  T+  L+ + GK    ++AS L   M + G+ P+
Sbjct: 295 IQNSHCQEALRLFQEMKEAGCCPNRV-TYNALLDVYGKGGMHKEASELLVEMEAAGISPN 353

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           +  Y  L++AY ++GL DEA +    + S   C PD +TY  LI +  +  R++   +  
Sbjct: 354 IVTYNELIAAYARAGLCDEAAALKKSLLSKGLC-PDEFTYCTLISAFNRAERYEKALETF 412

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM       + VTYN +ID YG+ +K ++M   F  M E   C PD+ T NS++ ++GN
Sbjct: 413 TEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKN-CTPDLVTWNSLLKSFGN 471

Query: 269 SGNIEKMEKWYNE------------FNLM-----------------------GVKADIQT 293
            G + ++   + E            FN++                       G++  + T
Sbjct: 472 CGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPT 531

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L  S  R G + +   V   M +     +   +  +I ++  +G   ++ +Y  +++
Sbjct: 532 FAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELE 591

Query: 354 HRGMKPNS--------ITYC----------------------------SLVSAYSKAGLI 377
               +P S        + YC                            +++S  +K G I
Sbjct: 592 KSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWI 651

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   +L ++  + +  D   +NC++S YG+ G   K  E+   M+     P+ IT+ T+
Sbjct: 652 ERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTL 711

Query: 438 IQAYNALGMTEAAQNLENKMIAMK 461
           + +Y   G  + A  +   M+A +
Sbjct: 712 LYSYTKHGRMDDAARVFGDMVAAR 735



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 144/327 (44%), Gaps = 1/327 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G C    + S +F  M   G  P VD +  L+  YG+ G +D +      +
Sbjct: 461 TWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGL 520

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  +P V T++ L+ S  +  R+   EK+  EM+  G++ S   +  +I  Y  + +
Sbjct: 521 LR-TGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQ 579

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F ++      + +S           + + AY   G   + +   N+    G   DI+  N
Sbjct: 580 FFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFN 639

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +     + G  ++   +++ ++K    P  VTYN ++  +G+ G   K EE   +M+  
Sbjct: 640 AMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRA 699

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN ITY +L+ +Y+K G +     +   +  + V  D   FN ++ +Y   G  ++ 
Sbjct: 700 GKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEA 759

Query: 416 GELFLTMKERHCVPDNITFATMIQAYN 442
             +   M E  C P  ITF  ++  YN
Sbjct: 760 LSVIEYMTEHGCQPTQITFKALLDGYN 786



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 176/371 (47%), Gaps = 22/371 (5%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + ++++ AL+ F  +R+         T+  L+ + G+ ++ +    +F+ M      P +
Sbjct: 401 RAERYEKALETFTEMRKTNC-TPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDL 459

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             + +L+ ++G  G+L E  +   +MK      P V T++ILI+   +    D    I  
Sbjct: 460 VTWNSLLKSFGNCGMLTEVSNVFREMKRAG-YMPGVDTFNILIECYGRCGYVDYSVDIYK 518

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-----GCHPDIFTLNSMIS 264
            +   G++ +  T+  ++    +  ++++ E     M E+G      CH        +I 
Sbjct: 519 GLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHA------GLIH 572

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLN-ILTKS----YGRAGMYDKMRSVMDFMQK 319
           +Y NSG   ++ K+ +E      K+  Q L+ IL K+    Y + GM ++ +  ++ +  
Sbjct: 573 SYANSGQFFQLRKYIDELE----KSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYD 628

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P +  +N +I    K G IE+  +  ++++   +KP+ +TY  L+S Y + G+  K
Sbjct: 629 NGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYK 688

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            + ++ ++  +    +   +N ++ +Y + G ++    +F  M      PDN TF T++ 
Sbjct: 689 AEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVG 748

Query: 440 AYNALGMTEAA 450
           +Y++LG+ + A
Sbjct: 749 SYSSLGLYKEA 759



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IEKMEEY 348
           D+     L     RA  +D+  ++ + MQ+       VTYN++++ +GK G   ++++  
Sbjct: 212 DVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSL 271

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK   + P+  TY ++++A  +     +   + ++++ +    +   +N ++  YG+
Sbjct: 272 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGK 331

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G  ++  EL + M+     P+ +T+  +I AY   G+ + A  L+  +++
Sbjct: 332 GGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLS 382


>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35130-like [Glycine max]
          Length = 357

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 157/286 (54%), Gaps = 8/286 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+T L+ + GK  +   A +LF  M +   KP++  YTALV+A+ + GL ++A      
Sbjct: 42  ETYTMLINLYGKAGKSFMALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQ 101

Query: 175 MKSVSDCKPDVYTYSILIKS---CTKFHRFDL---IEKILAEMSYLGIECSAVTYNTIID 228
           M+  +  +PDVY Y+ L+++    + F R        +I + M ++G E    +YN ++D
Sbjct: 102 MQE-AGLEPDVYAYNALMETYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVD 160

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            YGKA   ++ E+ F  M +  G  P + +   + SAY   GN+ K E+  N+    G+K
Sbjct: 161 AYGKAGFQDDAEAVFKDM-KRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLK 219

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            +   L  +   YGR G + KM  V+  M+K  +   + TYNI+I  +G+AG IE+ME++
Sbjct: 220 LNTYVLKSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDF 279

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           F+ +  +G+KP+ +T+ S + AYS   L +K   I  +  ++ V+L
Sbjct: 280 FQLLPSKGLKPDVVTWTSRMGAYSXKKLYLKCLEIFEETIDAKVLL 325



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 151/319 (47%), Gaps = 31/319 (9%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K    ++A  +F+ M  D  K + + YT L++ YG++G    A    ++M +   CKP
Sbjct: 16  LMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALILFHEM-TTHKCKP 74

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ TY+ L+ +  +    +  E++  +M   G+E     YN +++ Y  +  F      +
Sbjct: 75  NICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSPFSRAGYPY 134

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            A         +IF+L                         MG + D  + NIL  +YG+
Sbjct: 135 GA--------AEIFSL----------------------MQHMGCEPDRASYNILVDAYGK 164

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG  D   +V   M++    PT+ ++ ++   + K G++ K EE   +M   G+K N+  
Sbjct: 165 AGFQDDAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYV 224

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
             S+++ Y + G   K++ +LR +E    + D   +N +I+ YGQAG +E+M + F  + 
Sbjct: 225 LKSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLP 284

Query: 424 ERHCVPDNITFATMIQAYN 442
            +   PD +T+ + + AY+
Sbjct: 285 SKGLKPDVVTWTSRMGAYS 303



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 17/282 (6%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P    Y+  I    K    D  E+I   M     + +  TY  +I+ YGKA K      S
Sbjct: 4   PSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGK------S 57

Query: 243 FSAMV-----ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           F A++      +  C P+I T  ++++A+   G  EK E+ + +    G++ D+   N L
Sbjct: 58  FMALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNAL 117

Query: 298 TKSY------GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            ++Y       RAG       +   MQ     P   +YNI+++ +GKAG  +  E  FK 
Sbjct: 118 METYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKD 177

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G+ P   ++  L SAYSK G + K + IL Q+  S + L+T     +++ YG+ G 
Sbjct: 178 MKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQ 237

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             KM E+   M++   V D  T+  +I  Y   G  E  ++ 
Sbjct: 238 FGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDF 279



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
           +P     N+ I+     GN +K E+ +        K+  +T  +L   YG+AG       
Sbjct: 3   NPSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALI 62

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY- 371
           +   M      P + TY  ++  F + G  EK EE F++M+  G++P+   Y +L+  Y 
Sbjct: 63  LFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYK 122

Query: 372 -----SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
                S+AG       I   +++     D   +N ++ AYG+AG  +    +F  MK   
Sbjct: 123 FSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVG 182

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             P   +   +  AY+ +G     + + N+M
Sbjct: 183 ITPTMKSHMVLQSAYSKMGNVNKCEEILNQM 213


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 171/354 (48%), Gaps = 3/354 (0%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L + +   +  +  ++     +  L+   GK +Q  +A  ++  +L     P+ D 
Sbjct: 153 KKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDT 212

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+ AY  +G L  A   I++M+      P+   Y+  +    K    +   ++   M
Sbjct: 213 YALLLRAYCNAGSLHRAEGVISEMRE-HGIPPNATVYNAYLDGLLKARCTEKAVEVYQRM 271

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                  +  T+  +I+ YGKAK+       F+ M +S GC P+I T  ++++A+   G 
Sbjct: 272 KRERCRANTETFTLMINVYGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAFAREGL 330

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            EK E+ + E    G + D+   N L ++Y RAG+      +   MQ     P   +YNI
Sbjct: 331 CEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNI 390

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +++ +G+AG  E  E  F+++K RGM P   ++  L++A++++G   + + ++ Q+  S 
Sbjct: 391 LVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSG 450

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           +  DT   N +++AY +AG ++ M  LF  M ER    D  T+   + AY   G
Sbjct: 451 LTPDTFALNAMLNAYARAGRLDDMERLFAAM-ERRGDADVGTYNVAVNAYGRAG 503



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 182/341 (53%), Gaps = 4/341 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +  + A++++  +++++  +A  +TFT ++ + GK KQP  +  +F  M S G
Sbjct: 252 LDGLLKARCTEKAVEVYQRMKRERC-RANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG 310

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++       
Sbjct: 311 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGA 369

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+A   E+ E+ F  + + G   P + +   +++
Sbjct: 370 SEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRG-MSPTMKSHMLLLA 428

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+  SGN  + E+   + +  G+  D   LN +  +Y RAG  D M  +   M++R    
Sbjct: 429 AHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGD-A 487

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V TYN+ +  +G+AG++ +ME  F  +  RG+  + +T+ + + AY++     +   ++
Sbjct: 488 DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMV 547

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            ++ ++    D      +++A      VE++  +  +M ++
Sbjct: 548 EEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKK 588



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 2/315 (0%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++     +P +  Y  L+ +YG+   L++A S    +   + C P   TY++L+++    
Sbjct: 165 ILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLE-AQCVPTEDTYALLLRAYCNA 223

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
                 E +++EM   GI  +A  YN  +DG  KA+  E+    +  M +   C  +  T
Sbjct: 224 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRM-KRERCRANTET 282

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
              MI+ YG +       K +NE   +G K +I T   L  ++ R G+ +K   V + MQ
Sbjct: 283 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 342

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 343 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHE 402

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             +++  +++   +         +++A+ ++G+  +  E+   + +    PD      M+
Sbjct: 403 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 462

Query: 439 QAYNALGMTEAAQNL 453
            AY   G  +  + L
Sbjct: 463 NAYARAGRLDDMERL 477



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 3/317 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K +  E+A  +++ M  +  + + + +T +++ YG++     +    N+MKS+  CKP
Sbjct: 255 LLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKP 313

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 314 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 373

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M +  GC PD  + N ++ AYG +G  E  E  + E    G+   +++  +L  ++ R
Sbjct: 374 SLM-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 432

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G   +   VM  + K    P     N ++  + +AG ++ ME  F  M+ RG   +  T
Sbjct: 433 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGT 491

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y   V+AY +AG + ++++    V    +  D   +   + AY +  +  +   +   M 
Sbjct: 492 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 551

Query: 424 ERHCVPDNITFATMIQA 440
           +  C PD  T   ++ A
Sbjct: 552 DAGCYPDAGTARVLLAA 568



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%)

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + DI   N+L +SYG+    +K  S+   + +    PT  TY +++  +  AG + + E 
Sbjct: 172 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 231

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
              +M+  G+ PN+  Y + +    KA    K   + ++++      +T  F  +I+ YG
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 291

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +A       ++F  MK   C P+  T+  ++ A+   G+ E A+ +  +M
Sbjct: 292 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEM 341


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 173/362 (47%), Gaps = 38/362 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIND 174
            +T ++       +  +A ++F+ M   G KP++  Y  +++ YG+ G+  ++    ++ 
Sbjct: 202 AYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDR 261

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS +   PD YTY+ LI  C + + ++    +L EM   G     VTYN ++D YGK++
Sbjct: 262 MKS-AGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSR 320

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---- 290
           + +E       M E  GC P I T NS+ISAY   G +E   +  N+    G+K D    
Sbjct: 321 RSKEAMEVLQEM-EGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTY 379

Query: 291 -------------------------------IQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
                                          I T N L K +G  G + +M  V + ++ 
Sbjct: 380 TTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT 439

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P +VT+N ++  FG+ G   ++   FK+MK  G  P   T+ +L+S+YS+ G   +
Sbjct: 440 FQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQ 499

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++ +++  + V  D   +N +++A  + G  ++  ++   MK+  C P+ +T+ +++ 
Sbjct: 500 AMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLH 559

Query: 440 AY 441
           AY
Sbjct: 560 AY 561



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 164/342 (47%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK ++ ++A  + + M  +G  PS+  Y +L+SAY + GLL++A    N M
Sbjct: 308 TYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQM 367

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPDV+TY+ L+    K  +     +I  EM   G + +  T+N +I  +G   K
Sbjct: 368 VE-KGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGK 426

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   +++  C PDI T N+++S +G +G   ++   + E    G   +  T N
Sbjct: 427 FTEMMKVFED-IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 485

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  SY R G +D+  +V   M +    P + +YN V+    + G  ++ E+   +MK  
Sbjct: 486 TLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDG 545

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN +TYCSL+ AY+    I ++ ++  ++ +  +         ++    +   + + 
Sbjct: 546 RCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMET 605

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              FL +++R   PD  T   M+  Y    M   A  + + M
Sbjct: 606 ERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCM 647



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 172/370 (46%), Gaps = 5/370 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQA--RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KK   AL++F  +R ++  +          ++ +LGK  +   A+ L   +  DG    V
Sbjct: 141 KKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDV 200

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKIL 208
             YT++++A+  +G   EA      M+ V  CKP + TY++++    K    ++ +  ++
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVG-CKPTLITYNVILNVYGKMGMPWNKMVGLV 259

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   GI   + TYNT+I    +   +EE       M +  G  PD  T N+++  YG 
Sbjct: 260 DRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEM-KLAGFSPDKVTYNALLDVYGK 318

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           S   ++  +   E    G    I T N L  +Y R G+ +    + + M ++   P V T
Sbjct: 319 SRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFT 378

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  ++  F KAG  +   + F++M++ G KPN  T+ +L+  +   G   ++  +   ++
Sbjct: 379 YTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIK 438

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
                 D   +N ++S +GQ G   ++  +F  MK    VP+  TF T+I +Y+  G  +
Sbjct: 439 TFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFD 498

Query: 449 AAQNLENKMI 458
            A  +  +M+
Sbjct: 499 QAMAVYKRML 508



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 163/342 (47%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D +  L+S+Y + G  D+A +    M
Sbjct: 448 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 507

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ +Y+ ++ +  +   +   EK+LAEM     + + +TY +++  Y   K+
Sbjct: 508 LE-AGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKE 566

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M  + +  + SG   P    L +++        + + E+ + E    G   DI TLN
Sbjct: 567 IERM-CALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLN 625

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   ++D M++  F P++ TYN ++  + ++ + E+ EE  +++  +
Sbjct: 626 AMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAK 685

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+ I+Y +++ AY + G +     +L ++  S    D   +N  I++Y       + 
Sbjct: 686 GIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEA 745

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++   M +  C P+  T+ +++  Y  L   + A    N +
Sbjct: 746 IDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 787



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 163/355 (45%), Gaps = 23/355 (6%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L+L + G+++   +Y+ +C T  ++   +   K+ E        +L +G      +   +
Sbjct: 126 LSLDVLGIVKGLGFYK-KCDTALRVFEWVRNRKESE--------LLLNG-----SIIAVI 171

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKP----DVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +S  G+ G +  A S ++++     CK     DVY Y+ +I + T   R+     +  +M
Sbjct: 172 ISILGKGGRVSAAASLLHNL-----CKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKM 226

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             +G + + +TYN I++ YGK              ++S G  PD +T N++IS       
Sbjct: 227 EEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNL 286

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            E+      E  L G   D  T N L   YG++    +   V+  M+     P++VTYN 
Sbjct: 287 YEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNS 346

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I  + + G +E   E   +M  +G+KP+  TY +L+S + KAG       I  ++ N  
Sbjct: 347 LISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEG 406

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
              +   FN +I  +G  G   +M ++F  +K   C PD +T+ T++  +   GM
Sbjct: 407 CKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGM 461



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 11/266 (4%)

Query: 97  ALKIFGLLRQQQWYQA-----RCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           AL   GL +Q +   A     RC+    T+  L+      K+ E+   L E + S  ++P
Sbjct: 525 ALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEP 584

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
              +   LV    +  LL E      +++      PD+ T + ++    +        +I
Sbjct: 585 RAVLLKTLVLVNSKCDLLMETERAFLELRQ-RGFSPDITTLNAMVSIYGRRQMVAKANEI 643

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L  M   G   S  TYN+++  Y ++  FE  E     ++ + G  PDI + N++I AY 
Sbjct: 644 LDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREIL-AKGIRPDIISYNTVIYAYC 702

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            +G +    +  +E    G   DI T N    SY    M+ +   V+ +M K    P   
Sbjct: 703 RNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQS 762

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMK 353
           TYN +++ + K    ++   +   ++
Sbjct: 763 TYNSIVDWYCKLNRRDEASMFVNNLR 788


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 168/336 (50%), Gaps = 6/336 (1%)

Query: 111 QARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +ARC     T+  L+         E+A  +F  M   G  PS  VY A +    + G   
Sbjct: 126 EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQ 185

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A      MK    C+P   TY++LI    K  +  +  K+  EM     + +  T+  +
Sbjct: 186 KAVEIFERMKR-DRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTAL 244

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ++ + +    E+ E  F  + E+G   PD++  N+++ AY  +G      + ++    MG
Sbjct: 245 VNAFAREGLCEKAEEIFEQLQEAG-LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMG 303

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + D  + NI+  +YGRAG+++  ++V + M++    PT+ ++ +++  + +AG + K E
Sbjct: 304 CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCE 363

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E   +M   G+KP++    S+++ Y + G   K++ +L  +E      D   +N +I+ Y
Sbjct: 364 EIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIY 423

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           G+AG   +M ELF ++  R+ +PD +T+ + I AY+
Sbjct: 424 GRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYS 459



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++      P V  Y  L+ AYGQ  L  +A ST  ++   + C P   TY++L+K+    
Sbjct: 88  ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE-ARCVPTEDTYALLLKAYCTS 146

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 229
              +  E + AEM   G   SAV YN  IDG                             
Sbjct: 147 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 206

Query: 230 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
                 YGKA K       F  M  S  C P+I T  ++++A+   G  EK E+ + +  
Sbjct: 207 TMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 265

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 266 EAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 325

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             +  F+ MK  G+ P   ++  L+SAYS+AG + K + I+ Q+  S +  DT   N ++
Sbjct: 326 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 385

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           + YG+ G  EKM E+   M++     D  T+  +I  Y   G
Sbjct: 386 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 427



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K    ++A  +FE M  D  +PS   YT L++ YG++     A    ++M+S   CKP
Sbjct: 178 LMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRS-QKCKP 236

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ T++ L+ +  +    +  E+I  ++   G+E     YN +++ Y +A  F    +  
Sbjct: 237 NICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG-FPYGAAEI 295

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            ++++  GC PD  + N M+ AYG +G  E  +  +     +G+   +++  +L  +Y R
Sbjct: 296 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 355

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI- 362
           AG   K   +++ M K    P     N ++  +G+ G  EKMEE    M+ +G  P  I 
Sbjct: 356 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADIS 414

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L++ Y +AG   +++ + R +   ++I D   +   I AY +     +  E+F  M
Sbjct: 415 TYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEM 474

Query: 423 KERHCVPDNIT 433
            +  C PD  T
Sbjct: 475 IDAGCYPDGGT 485


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 179/357 (50%), Gaps = 19/357 (5%)

Query: 18  PKFYKEPVFRIQAIKR--SPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKN 75
           P+  K PV R+ + +R  S G I E         +++ ILR        E+ +++  Y +
Sbjct: 295 PRETKMPVVRVPSTRRFASNGHIVE---------NVAHILRQIRWGPAAEEALANLNY-S 344

Query: 76  LWPKPVLEALDEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           + P       ++ +KQ +   +AL  F  L++Q  +     T+T ++ +LG+ KQ    +
Sbjct: 345 MDPYQA----NQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAIN 400

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            L + M+ DG +P+V  Y  L+ +YG++  L++A    N+M+ V  C+PD  TY  LI  
Sbjct: 401 KLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVG-CEPDRVTYCTLIDI 459

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K    D   ++   M   G+     TY+ II+  GKA         F  MVE G C P
Sbjct: 460 HAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQG-CVP 518

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           ++ T N MI+    + N +   K Y +    G + D  T +I+ +  G  G  D+  +V 
Sbjct: 519 NLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVF 578

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             M+++ + P    Y ++++ +GKAG++EK  ++++ M + G++PN  T  SL+SA+
Sbjct: 579 SEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAF 635



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 136/280 (48%), Gaps = 1/280 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +TY+ ++    +  +F  I K+L +M   G + + VTYN +I  YG+A    +    F
Sbjct: 379 DGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVF 438

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           + M +  GC PD  T  ++I  +  +G ++   + Y      G+  D  T +++    G+
Sbjct: 439 NEM-QRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGK 497

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG       +   M ++   P +VTYNI+I    KA + +   + ++ M+  G +P+ +T
Sbjct: 498 AGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVT 557

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  ++      G + + +++  +++  + + D P +  ++  +G+AG+VEK  + + TM 
Sbjct: 558 YSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTML 617

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
                P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 618 NTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLN 657



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G   D  T   +    GRA  +  +  ++D M K    P VVTYN +I ++G+A ++   
Sbjct: 375 GFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDA 434

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F +M+  G +P+ +TYC+L+  ++KAG +     + ++++ + +  DT  ++ II+ 
Sbjct: 435 VDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINC 494

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
            G+AG +    +LF  M E+ CVP+ +T+  MI
Sbjct: 495 LGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMI 527



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 99/207 (47%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G + D  T  +M+   G +     + K  ++    G + ++ T N L  SYGRA   +  
Sbjct: 375 GFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDA 434

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V + MQ+    P  VTY  +I+   KAG ++   E +++M+  G+ P++ TY  +++ 
Sbjct: 435 VDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINC 494

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             KAG +     +  ++     + +   +N +I+   +A + +   +L+  M+     PD
Sbjct: 495 LGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPD 554

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            +T++ +++     G  + A+ + ++M
Sbjct: 555 KVTYSIVMEVLGHCGYLDEAEAVFSEM 581



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 53/119 (44%)

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           H   +  ++   +  G   +  TY ++V    +A     ++ +L Q+       +   +N
Sbjct: 360 HTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYN 419

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I +YG+A  +    ++F  M+   C PD +T+ T+I  +   G  + A  +  +M A
Sbjct: 420 RLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQA 478


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 178/362 (49%), Gaps = 3/362 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F  L+Q + Y      +T L+ +L + ++ ++   LFE M  +G + +   Y  ++
Sbjct: 57  ALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVML 116

Query: 157 SAYGQSG-LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
             YG+ G   D   S   +MK + +  PD YTY+ +I +C +        ++  EM   G
Sbjct: 117 DLYGKRGDSWDRIQSLFQEMKDL-EISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAG 175

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              + VTYN ++D YGK    +E  S     +E+ G  P+I T N +I+AY  +G  ++ 
Sbjct: 176 CCPNRVTYNALLDVYGKGGMHKE-ASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEA 234

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                     G+  D  T   L  ++ RA  Y+K       M+K    P +VTYNI+I+ 
Sbjct: 235 AALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDI 294

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +G+   ++ M + FK M+ +   P+ +T+ SL+ ++   G++ +V ++ R+++ +  +  
Sbjct: 295 YGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPG 354

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FN +I  YG+ G V+   +++  +      P   TFA ++ +    G  +  + +  
Sbjct: 355 VDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQ 414

Query: 456 KM 457
           +M
Sbjct: 415 EM 416



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 176/369 (47%), Gaps = 37/369 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q KW+ AL++F  +R+   ++ R      ++ +LG  +Q   A  LFE +  D      
Sbjct: 14  RQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQD------ 67

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
                            E++S             DVY Y+ LI   ++  RFD    +  
Sbjct: 68  -----------------ESYSL------------DVYAYTSLISILSRARRFDEGITLFE 98

Query: 210 EMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            M   G   +AVTYN ++D YGK    ++ ++S F  M +     PD +T N+MI+A   
Sbjct: 99  TMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLE-ISPDDYTYNTMITACIQ 157

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           + + ++  + + E    G   +  T N L   YG+ GM+ +   ++  M+     P +VT
Sbjct: 158 NSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVT 217

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I  + +AG  ++     K +  +G+ P+  TYC+L+SA+++A    K      ++ 
Sbjct: 218 YNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMR 277

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            ++   +   +N +I  YG+   ++ M ++F  M+E++C PD +T+ ++++++   GM  
Sbjct: 278 KTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLT 337

Query: 449 AAQNLENKM 457
              N+  +M
Sbjct: 338 EVSNVFREM 346



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/444 (23%), Positives = 189/444 (42%), Gaps = 74/444 (16%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           I+    Q AL++F  +++      R  T+  L+ + GK    ++AS L   M + G+ P+
Sbjct: 156 IQNSHCQEALRLFQEMKEAGCCPNRV-TYNALLDVYGKGGMHKEASELLVEMEAAGISPN 214

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           +  Y  L++AY ++GL DEA +    + S   C PD +TY  LI +  +  R++   +  
Sbjct: 215 IVTYNELIAAYARAGLCDEAAALKKSLLSKGLC-PDEFTYCTLISAFNRAERYEKALETF 273

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM       + VTYN +ID YG+ +K ++M   F  M E   C PD+ T NS++ ++GN
Sbjct: 274 TEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKN-CTPDLVTWNSLLKSFGN 332

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G + ++   + E    G    + T NIL + YGR G  D    +   + +    PTV T
Sbjct: 333 CGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPT 392

Query: 329 YNIV-----------------------------------IETFGKAGHIEKMEEYFKKMK 353
           +  +                                   I ++  +G   ++ +Y  +++
Sbjct: 393 FAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELE 452

Query: 354 HRGMKPNS--------ITYC----------------------------SLVSAYSKAGLI 377
               +P S        + YC                            +++S  +K G I
Sbjct: 453 KSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWI 512

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   +L ++  + +  D   +NC++S YG+ G   K  E+   M+     P+ IT+ T+
Sbjct: 513 ERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTL 572

Query: 438 IQAYNALGMTEAAQNLENKMIAMK 461
           + +Y   G  + A  +   M+A +
Sbjct: 573 LYSYTKHGRMDDAARVFGDMVAAR 596



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 165/340 (48%), Gaps = 6/340 (1%)

Query: 122 VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
            M+  C Q    ++A  LF+ M   G  P+   Y AL+  YG+ G+  EA   + +M++ 
Sbjct: 150 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 209

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               P++ TY+ LI +  +    D    +   +   G+     TY T+I  + +A+++E+
Sbjct: 210 G-ISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEK 268

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
              +F+ M ++  C P+I T N +I  YG    ++ M K +          D+ T N L 
Sbjct: 269 ALETFTEMRKTN-CTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLL 327

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           KS+G  GM  ++ +V   M++  + P V T+NI+IE +G+ G+++   + +K +   G++
Sbjct: 328 KSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQ 387

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P   T+ +L+++ ++ G   + + + +++  + + L       +I +Y  +G   ++ + 
Sbjct: 388 PTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKY 447

Query: 419 FLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKM 457
              +++    P   I   T + AY    M   AQ   N++
Sbjct: 448 IDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQL 487



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 1/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G C    + S +F  M   G  P VD +  L+  YG+ G +D +      +
Sbjct: 322 TWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGL 381

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  +P V T++ L+ S  +  R+   EK+  EM+  G++ S   +  +I  Y  + +
Sbjct: 382 LR-TGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQ 440

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F ++      + +S           + + AY       + +   N+    G   DI+  N
Sbjct: 441 FFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFN 500

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +     + G  ++   +++ ++K    P  VTYN ++  +G+ G   K EE   +M+  
Sbjct: 501 AMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRA 560

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN ITY +L+ +Y+K G +     +   +  + V  D   FN ++ +Y   G  ++ 
Sbjct: 561 GKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEA 620

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             +   M E  C P  ITF  ++  Y
Sbjct: 621 LSVIEYMTEHGCQPTQITFKALLDGY 646



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/406 (20%), Positives = 168/406 (41%), Gaps = 73/406 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    ++A+ L + +LS GL P    Y  L+SA+ ++   ++A  T  +M
Sbjct: 217 TYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEM 276

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  ++C P++ TY+ILI    +  + D + K+   M         VT+N+++  +G    
Sbjct: 277 RK-TNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGM 335

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E+ + F  M +  G  P + T N +I  YG  G ++     Y      G++  + T  
Sbjct: 336 LTEVSNVFREM-KRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFA 394

Query: 296 IL-----------------------------------TKSYGRAGMYDKMRSVMDFMQKR 320
            L                                     SY  +G + ++R  +D ++K 
Sbjct: 395 ALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKS 454

Query: 321 ------------FFF------------------------PTVVTYNIVIETFGKAGHIEK 344
                       F                          P +  +N +I    K G IE+
Sbjct: 455 AKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIER 514

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             +  ++++   +KP+ +TY  L+S Y + G+  K + ++ ++  +    +   +N ++ 
Sbjct: 515 AVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLY 574

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +Y + G ++    +F  M      PDN TF T++ +Y++LG+ + A
Sbjct: 575 SYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEA 620



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IEKMEEY 348
           D+     L     RA  +D+  ++ + MQ+       VTYN++++ +GK G   ++++  
Sbjct: 73  DVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSL 132

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK   + P+  TY ++++A  +     +   + ++++ +    +   +N ++  YG+
Sbjct: 133 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGK 192

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G  ++  EL + M+     P+ +T+  +I AY   G+ + A  L+  +++
Sbjct: 193 GGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLS 243


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 179/395 (45%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L +   + ++  Y      +  ++  + + KQ E A  LFE M    L P  
Sbjct: 131 REPDWQRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDR 190

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L++ +G+ G+ D A S +  M+       D+  YS LI+   K   +     I +
Sbjct: 191 YTYSTLITHFGKEGMFDSALSWLQKMEQ-DRVSGDLVLYSNLIELSRKLCDYSKAISIFS 249

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEME-------------------SSFSAMVESG 250
            +   GI    V YN++I+ +GKAK F E                     +  S  VE+G
Sbjct: 250 RLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENG 309

Query: 251 G---------------CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                           C  D+ T N MI  YG     ++ ++ +     MG++  I + N
Sbjct: 310 KYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYN 369

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ++     VVTYN +I+ +GK+   EK     ++M++R
Sbjct: 370 TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNR 429

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +   + +++ +S + +D   +  +I AY +AG V   
Sbjct: 430 GIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHA 489

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 490 KRLLHELKR----PDNIPRETAITILAGAGRIEEA 520



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 151/373 (40%), Gaps = 44/373 (11%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ-TFTKLMVML---GKCKQPEQASLLFEVMLSDG 144
           ++  K+  AL +F  + +      RC    T   VM+   G+    ++A  LF  M   G
Sbjct: 306 VENGKYVEALSVFSEMNE-----VRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMG 360

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P +  Y  L+  YG++ L  EA      M+   D + +V TY+ +IK   K    +  
Sbjct: 361 IEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQR-KDIEQNVVTYNTMIKIYGKSLEHEKA 419

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             ++ EM   GIE +A+TY+TII  + KA K +     F  +  S G   D     +MI 
Sbjct: 420 TNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKL-RSSGIEIDQVLYQTMIV 478

Query: 265 AYGNSGNIEKMEKWYNE--------------------------------FNLMGVKADIQ 292
           AY  +G +   ++  +E                                F+   VK DI 
Sbjct: 479 AYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVK-DIT 537

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
               +   + R   +  +  V D M+   +FP      +V+   GK    EK +  +K+M
Sbjct: 538 VFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEM 597

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G   +   +  ++S Y   G    VDS+  ++++   I        + S Y +A  +
Sbjct: 598 EEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHLVVASIYERANRL 657

Query: 413 EKMGELFLTMKER 425
               ++   M+ER
Sbjct: 658 NDASQIMNRMRER 670



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+V  YN+VI    +A   E     F++M+ R + P+  TY +L++ + K G+     
Sbjct: 151 YSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSAL 210

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           S L+++E   V  D   ++ +I    +  D  K   +F  +K     PD + + +MI  +
Sbjct: 211 SWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVF 270

Query: 442 NALGMTEAAQNLENKMIA 459
               +   A+ L  +M A
Sbjct: 271 GKAKLFREARLLLPEMRA 288


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 2/317 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+KP+V  Y  +++ Y   G  + A      MK   + KPD YTY+  I    K  R + 
Sbjct: 247 GVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKD-KNLKPDCYTYNSFISRLCKERRIEE 305

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +L ++   G+  +AVTYN +IDG       ++  +    M+  G     +FT N +I
Sbjct: 306 ASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIV-ASVFTYNLLI 364

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A      IE+ E    E    GV+ D+ T NI    Y R G   K  S+ D M ++   
Sbjct: 365 HALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIR 424

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PTV TY  +I+ FGK   + + EE FKK    GM P+ I + +L+  +   G I +   +
Sbjct: 425 PTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQL 484

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L++++N+ V+ D   FN ++  Y +   VE+  +L   MKER   PD+I++ T+I  Y+ 
Sbjct: 485 LKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSK 544

Query: 444 LGMTEAAQNLENKMIAM 460
            G  + A  + ++M+++
Sbjct: 545 RGDMKDALEVFDEMLSL 561



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 165/354 (46%), Gaps = 36/354 (10%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           K++ A KIF  ++ +   +  C T+   +  L K ++ E+AS +   +L  GL P+   Y
Sbjct: 267 KFEAASKIFKTMKDKNL-KPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTY 325

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+      G LD+AF+  ++M +       V+TY++LI +     R +  E ++ EM 
Sbjct: 326 NALIDGCCNKGDLDKAFAYRDEMMN-RGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMR 384

Query: 213 YLGIECSAVTYNTIIDGY---GKAKK----FEEM-ESSFSAMVES--------------- 249
             G+E   VTYN  I+GY   G AKK    F+EM E +    VE+               
Sbjct: 385 EKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMS 444

Query: 250 -----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                       G  PDI   N++I  +  +GNI++  +   E +   V  D  T N L 
Sbjct: 445 EAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLM 504

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           + Y R    ++ + ++D M++R   P  ++YN +I  + K G ++   E F +M   G  
Sbjct: 505 QGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFD 564

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           P  +TY +L+  YSK G     + +LR++++  +  D   +  +I A     D+
Sbjct: 565 PTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDL 618



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 3/302 (0%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           V+  L+SAY Q    DEA   +N MK  ++  P   T + L+    K ++  +   +  E
Sbjct: 149 VFDLLLSAYCQFRKPDEALECLNLMKE-NEIIPKTETCNSLLSLLLKLNKIKMAWFVYEE 207

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M  + I+ S VT+N +I+   +  K+++ +  F   +E  G  P++ T N++I+ Y   G
Sbjct: 208 MVKMNIKSSIVTFNIMINILCREGKWKKAKD-FIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             E   K +       +K D  T N       +    ++   V+  + +    P  VTYN
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+     G ++K   Y  +M +RG+  +  TY  L+ A      I + + +++++   
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA 449
            V  D   +N  I+ Y + G+ +K   LF  M E++  P   T+ ++I  +     M+EA
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEA 446

Query: 450 AQ 451
            +
Sbjct: 447 EE 448



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%)

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I T N MI+     G  +K + +     + GVK ++ T N +   Y   G ++    +  
Sbjct: 217 IVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFK 276

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ +   P   TYN  I    K   IE+      K+   G+ PN++TY +L+      G
Sbjct: 277 TMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKG 336

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + K  +   ++ N  ++     +N +I A      +E+  ++   M+E+   PD +T+ 
Sbjct: 337 DLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYN 396

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
             I  Y   G  + A +L ++M+
Sbjct: 397 IQINGYCRCGNAKKALSLFDEMV 419



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 80/179 (44%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y E   M +K+ I T NI+     R G + K +  +  M+     P VVTYN VI  +  
Sbjct: 205 YEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCL 264

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  E   + FK MK + +KP+  TY S +S   K   I +   +L ++  S ++ +   
Sbjct: 265 RGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVT 324

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +N +I      GD++K       M  R  V    T+  +I A       E A+++  +M
Sbjct: 325 YNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM 383


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 188/386 (48%), Gaps = 4/386 (1%)

Query: 53  KILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA 112
           K+ R + A   +E+ V      N+    VL  LD   K  K + A+ +  ++  ++ Y  
Sbjct: 302 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVL--LDAFCKCGKAEDAIGLVEVM-VEKGYVP 358

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
              T+  L+ M  K  + E+A  L   M+  G  P+V  Y  +++   ++  + E    +
Sbjct: 359 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 418

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             M S ++C PD+ T++ +I +  K +R D+  ++   +   G   + VTYN+++ G  K
Sbjct: 419 EQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           +++F++ E     M    GC PDI T N++I     S  +++  K + +    G+  D  
Sbjct: 478 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 537

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T +I+  S  +    D+  +V++ M K  F P  +TY  +I+ F K G+++K  E  + +
Sbjct: 538 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 597

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+ +T+   +   SK G + +   +L  +  + ++ DT  +N ++  +  A   
Sbjct: 598 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRT 657

Query: 413 EKMGELFLTMKERHCVPDNITFATMI 438
           E   +LF  M++  C PDN T+ T++
Sbjct: 658 EDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 3/328 (0%)

Query: 115 QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             F+   V+ G CK  + E A  L E M+  G  P V  YT +++   +   +DEA   +
Sbjct: 78  NVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVM 137

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           + M     C+P+V TY  L+    +    D   +++ +M+  G   +A+TYN I+ G   
Sbjct: 138 DKMIQ-RGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCS 196

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            +K +     F  M ESG C PD+FT ++++ +   SG ++   +        G   ++ 
Sbjct: 197 GRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVV 256

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + L     +AG  D+  +++  M +    P +VTYN +I+   K G I++     ++M
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G +PN +TY  L+ A+ K G       ++  +     + +   +N ++  + +  +V
Sbjct: 317 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEV 376

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQA 440
           E+  +L  +M ++ CVP+ +++ T+I  
Sbjct: 377 ERACQLLSSMIQKGCVPNVVSYNTVIAG 404



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 158/334 (47%), Gaps = 1/334 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q+  Q    T+  L+    +    + A  L   M   G +P+   Y  ++        LD
Sbjct: 142 QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLD 201

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            A     +M+    C PDV+TYS ++ S  K  + D   +++  M   G   + VTY+++
Sbjct: 202 SALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSL 261

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + G  KA K +E  +    M  SG C P+I T N++I  +   G I++      E    G
Sbjct: 262 LHGLCKAGKLDEATALLQRMTRSG-CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 320

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + ++ T  +L  ++ + G  +    +++ M ++ + P + TYN +++ F K   +E+  
Sbjct: 321 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 380

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           +    M  +G  PN ++Y ++++   KA  + +   +L Q+ +++ + D   FN II A 
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 440

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +   V+   ELF  ++E  C P+ +T+ +++  
Sbjct: 441 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 172/368 (46%), Gaps = 3/368 (0%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           +K   AL++F  + +         T++ ++  L K  + + A  L E M+S G  P+V  
Sbjct: 198 RKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVT 257

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y++L+    ++G LDEA + +  M + S C P++ TY+ +I    K  R D    +L EM
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRM-TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G + + VTY  ++D + K  K E+       MVE G   P++FT NS++  +     
Sbjct: 317 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYV-PNLFTYNSLLDMFCKKDE 375

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +E+  +  +     G   ++ + N +     +A    +   +++ M      P +VT+N 
Sbjct: 376 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 435

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV-ENS 390
           +I+   K   ++   E F  ++  G  PN +TY SLV    K+    + + +LR++    
Sbjct: 436 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 495

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               D   +N +I    ++  V++  +LFL M      PD++T++ +I +       + A
Sbjct: 496 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 555

Query: 451 QNLENKMI 458
            N+   M+
Sbjct: 556 NNVLELML 563



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 172/379 (45%), Gaps = 38/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K  + ++A+ L + M   G  P++  Y  ++  + + G +DEA+  + +M
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 176 KSVSDCKPDVYTYSILIKS---CTK-----------------------------FHRFDL 203
                C+P+V TY++L+ +   C K                             F + D 
Sbjct: 317 VD-GGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDE 375

Query: 204 IEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           +E+   +L+ M   G   + V+YNT+I G  KA K  E       M+ S  C PDI T N
Sbjct: 376 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML-SNNCVPDIVTFN 434

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM-DFMQK 319
           ++I A   +  ++   + +N     G   ++ T N L     ++  +D+   ++ +  +K
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 494

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           +   P ++TYN VI+   K+  +++  + F +M   G+ P+ +TY  ++S+  K   + +
Sbjct: 495 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDE 554

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            +++L  +  +        +  +I  + + G+++K  E+   +  +   PD +TF+  I 
Sbjct: 555 ANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFID 614

Query: 440 AYNALGMTEAAQNLENKMI 458
             +  G    A  L   M+
Sbjct: 615 WLSKRGRLRQAGELLETML 633



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 147/351 (41%), Gaps = 39/351 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GLK    V+ +++     +G   +A     +M     C PD  TY+ +I   +K  R D 
Sbjct: 5   GLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT--CPPDSVTYNTMINGLSKSDRLDD 62

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++L EM   G   +  +YNT++ G+ KA + E        MV  G C PD+ +  ++I
Sbjct: 63  AIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG-CPPDVVSYTTVI 121

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +       +++  +  ++    G + ++ T   L   + R G  D    ++  M +R + 
Sbjct: 122 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181

Query: 324 PTVVTYN------------------------------------IVIETFGKAGHIEKMEE 347
           P  +TYN                                     ++++  K+G ++    
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             + M  +G  PN +TY SL+    KAG + +  ++L+++  S    +   +N II  + 
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 301

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + G +++   L   M +  C P+ +T+  ++ A+   G  E A  L   M+
Sbjct: 302 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV 352


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 182/387 (47%), Gaps = 37/387 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ K  +A  +   L  +  ++     +T L+       +  +A ++F+ M  +G KP++
Sbjct: 10  KEGKVSVAASLLNNL-HKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTL 68

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  +++ YG+ G+     + + +    +   PD YTY+ LI  C +   ++    +  
Sbjct: 69  ITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFE 128

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M  +G     VTYNT++D YGK+++ +E       M E  GC P I T NS+ISAY   
Sbjct: 129 DMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREM-EVNGCSPSIVTYNSLISAYARD 187

Query: 270 GNIEK-ME----------------------------------KWYNEFNLMGVKADIQTL 294
           G +E+ ME                                  + + E    G K +I T 
Sbjct: 188 GLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTF 247

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K +G  G + +M  V + ++     P +VT+N ++  FG+ G   ++   FK+MK 
Sbjct: 248 NALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 307

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P   TY +L+SAYS+ G   +  ++ +++ ++ +  D   +N +++A  + G  E+
Sbjct: 308 VGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQ 367

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
             ++   M++  C P+ +T  +++ AY
Sbjct: 368 SEKILAEMQDGMCKPNELTHCSLLHAY 394



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 160/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + GK ++ ++A  +   M  +G  PS+  Y +L+SAY + GLL+EA    N M
Sbjct: 141 TYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQM 200

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 K DV+TY+ ++    +  + +   ++  EM   G + +  T+N +I  +G   K
Sbjct: 201 VE-RGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGK 259

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F EM   F   ++   C PDI T N++++ +G +G   ++   + E   +G   +  T N
Sbjct: 260 FAEMMKVFEE-IKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYN 318

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y R G +D+  ++   M      P + TYN V+    + G  E+ E+   +M+  
Sbjct: 319 TLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDG 378

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
             KPN +T+CSL+ AY+    I ++ ++  ++ +  +         ++    +   + + 
Sbjct: 379 MCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEA 438

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              FL +K +   PD  T   MI  Y    M      + N M
Sbjct: 439 ERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFM 480



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 164/335 (48%), Gaps = 2/335 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D Y  L+SAY + G  D+A +    M
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRM 340

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD+ TY+ ++ +  +   ++  EKILAEM     + + +T+ +++  Y   K+
Sbjct: 341 LD-TGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKE 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              M  + +  + SG   P    L +++        + + E+ + E    G   D+ TLN
Sbjct: 400 IGRM-LALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLN 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   +++FM++  F P++ TYN ++    ++ + E+ EE  K++  +
Sbjct: 459 AMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAK 518

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+ I+Y +++ AY + G + +   I  ++  S +I D   +N  +++Y      E+ 
Sbjct: 519 GIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEA 578

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            ++   M +  C P+  T+ ++I  Y  L   + A
Sbjct: 579 IDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDA 613



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 3/337 (0%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           MLGK  +   A+ L   +  DG +P V  YT+L++A   +G   EA      M+    CK
Sbjct: 7   MLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE-EGCK 65

Query: 183 PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           P + TY++++    K    ++ I  +   M   GI     TYNT+I    +   +EE  +
Sbjct: 66  PTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAA 125

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M +S G  PD  T N+++  YG S  I++  +   E  + G    I T N L  +Y
Sbjct: 126 VFEDM-KSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAY 184

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R G+ ++   + + M +R     V TY  ++  F + G  E     F++M+  G KPN 
Sbjct: 185 ARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNI 244

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            T+ +L+  +   G   ++  +  +++    + D   +N +++ +GQ G   ++  +F  
Sbjct: 245 CTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 304

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           MK    VP+  T+ T+I AY+  G  + A  +  +M+
Sbjct: 305 MKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRML 341



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 1/198 (0%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+  G  G +       N  +  G + D+     L  +    G Y +   V   M++  
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 322 FFPTVVTYNIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
             PT++TYN+++  +GK G    K+   F+ MK+ G+ P+  TY +L++   +  L  + 
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEA 123

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            ++   +++   + D   +N ++  YG++  +++  E+   M+   C P  +T+ ++I A
Sbjct: 124 AAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISA 183

Query: 441 YNALGMTEAAQNLENKMI 458
           Y   G+ E A  L+N+M+
Sbjct: 184 YARDGLLEEAMELKNQMV 201



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 1/147 (0%)

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++    G+ G      S+++ + K  F P V  Y  +I      G   +    FKKM+  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 356 GMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           G KP  ITY  +++ Y K G+   K+  +   ++N+ ++ D   +N +I+   +    E+
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
              +F  MK    VPD +T+ T++  Y
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVY 149



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM M  + +  E++  + + +L+ G+KP +  Y  ++ AY ++G + EA    ++M
Sbjct: 491 TYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEM 550

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV TY+  + S      F+    ++  M   G + +  TYN++IDGY K  +
Sbjct: 551 RE-SGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNR 609

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
            ++     S++ E          L+  IS       +E++ KW
Sbjct: 610 RDDAIKFISSLHE----------LDPHISREDECRLLERLTKW 642



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++I   GK G +         +   G +P+   Y SL++A    G   +   + +++E  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 391 DVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                   +N I++ YG+ G    K+  LF  MK    +PD  T+ T+I       + E 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 450 AQNLENKMIAM 460
           A  +   M +M
Sbjct: 123 AAAVFEDMKSM 133


>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
 gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
 gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 499

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 172/361 (47%), Gaps = 5/361 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +E  ++  W   L +F  +++Q+WY A    ++KL+ ++G+  Q   A  LF  M + G
Sbjct: 95  FEELGRRDAWLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSG 154

Query: 145 LKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            KP   VY +L+ A+     ++  L +A      MK +  C+P + TY+IL+++  +   
Sbjct: 155 CKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGD 214

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              ++ +  ++    +     TYN ++D YGK    +EMES    M +S  C PD+ T N
Sbjct: 215 TKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRM-KSTQCRPDVITFN 273

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I +YG     +KME+ +        +    T N +  +YGRA + +K  SV++ M++ 
Sbjct: 274 ILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEEL 333

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P  VT   +I  +     + K  + F ++     K +  +  S++ AY   GL  + 
Sbjct: 334 GFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEA 393

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D +L       V+ +   +  +  AY +A D   + +L   M ++  VP+   F   ++A
Sbjct: 394 DRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEA 453

Query: 441 Y 441
           +
Sbjct: 454 F 454



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 281
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 127 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKTKALAKALGY 185

Query: 282 FNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
           F  M      +  I T NIL +++ +AG   ++  +   + +    P V TYN V++ +G
Sbjct: 186 FEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYG 245

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G I++ME    +MK    +P+ IT+  L+ +Y +     K++ + + +  S      P
Sbjct: 246 KNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 305

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        A+ + +++
Sbjct: 306 TFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDEL 365

Query: 458 I 458
           +
Sbjct: 366 V 366


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 188/386 (48%), Gaps = 4/386 (1%)

Query: 53   KILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA 112
            K+ R + A   +E+ V      N+    VL  LD   K  K + A+ +  ++  ++ Y  
Sbjct: 1030 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVL--LDAFCKCGKAEDAIGLVEVM-VEKGYVP 1086

Query: 113  RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
               T+  L+ M  K  + E+A  L   M+  G  P+V  Y  +++   ++  + E    +
Sbjct: 1087 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 1146

Query: 173  NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
              M S ++C PD+ T++ +I +  K +R D+  ++   +   G   + VTYN+++ G  K
Sbjct: 1147 EQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 233  AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            +++F++ E     M    GC PDI T N++I     S  +++  K + +    G+  D  
Sbjct: 1206 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 1265

Query: 293  TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            T +I+  S  +    D+  +V++ M K  F P  +TY  +I+ F K G+++K  E  + +
Sbjct: 1266 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 1325

Query: 353  KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              +G  P+ +T+   +   SK G + +   +L  +  + ++ DT  +N ++  +  A   
Sbjct: 1326 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLT 1385

Query: 413  EKMGELFLTMKERHCVPDNITFATMI 438
            E   +LF  M++  C PDN T+ T++
Sbjct: 1386 EDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 175/358 (48%), Gaps = 6/358 (1%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++ Y+    T+  +M +  +    E+A  + ++M+  G  P    Y+ ++S + ++G L 
Sbjct: 363 ERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLR 422

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYN 224
           EA   +  M     C+PDV   S LI +  K    D  +++L  MS +G++C+   V Y+
Sbjct: 423 EAHDLLEQMIR-RGCRPDVACLSTLIDALCKAAAIDSAQELL-RMS-IGMDCAPDVVAYS 479

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I    KAK+  E ES    MV++  C+PD+ T NS++     S  I      ++    
Sbjct: 480 ILIHALCKAKRLPEAESWLDVMVKNR-CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRA 538

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            GV  D+ T +I+  S+ +    D    +++ M++    P VVTY+ +I    KAG ++K
Sbjct: 539 AGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDK 598

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             + F++M   G  PN +TY +L+    K   + +   +L  +       D+  + C+I+
Sbjct: 599 AFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLIN 658

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
               A  +E+   +   MK++ C+PD +T+ T+++A       E  + L  +M A +E
Sbjct: 659 GLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEE 716



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 160/325 (49%), Gaps = 1/325 (0%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            TFT L+  L +      A  L + M   G+  +V ++  ++     +  LD A     +M
Sbjct: 879  TFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEM 938

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +    C PDV+TYS ++ S  K  + D   +++ +M   G   + VTY++++ G  KA K
Sbjct: 939  EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGK 998

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +E  +    M  SG C P+I T N++I  +   G I++      E    G + ++ T  
Sbjct: 999  LDEATALLQRMTRSG-CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYT 1057

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +L  ++ + G  +    +++ M ++ + P + TYN +++ F K   +E+  +    M  +
Sbjct: 1058 VLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK 1117

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            G  PN ++Y ++++   KA  + +   +L Q+ +++ + D   FN II A  +   V+  
Sbjct: 1118 GCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIA 1177

Query: 416  GELFLTMKERHCVPDNITFATMIQA 440
             ELF  ++E  C P+ +T+ +++  
Sbjct: 1178 YELFNLIQESGCTPNLVTYNSLVHG 1202



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 172/368 (46%), Gaps = 3/368 (0%)

Query: 92   KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
            +K   AL++F  + +         T++ ++  L K  + + A  L E M+S G  P+V  
Sbjct: 926  RKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVT 985

Query: 152  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            Y++L+    ++G LDEA + +  M + S C P++ TY+ +I    K  R D    +L EM
Sbjct: 986  YSSLLHGLCKAGKLDEATALLQRM-TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 1044

Query: 212  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               G + + VTY  ++D + K  K E+       MVE G   P++FT NS++  +     
Sbjct: 1045 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYV-PNLFTYNSLLDMFCKKDE 1103

Query: 272  IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +E+  +  +     G   ++ + N +     +A    +   +++ M      P +VT+N 
Sbjct: 1104 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 1163

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV-ENS 390
            +I+   K   ++   E F  ++  G  PN +TY SLV    K+    + + +LR++    
Sbjct: 1164 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 1223

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
                D   +N +I    ++  V++  +LFL M      PD++T++ +I +       + A
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 451  QNLENKMI 458
             N+   M+
Sbjct: 1284 NNVLELML 1291



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 159/356 (44%), Gaps = 4/356 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L+  +K  ++  A  +F    + QW      T++ L+    +  +   A  LF+ M   G
Sbjct: 133 LNVLVKAHQYSQAHDLFRSRIEGQW-GGDTVTYSTLISGFIRAGKILPAYELFDEMNRKG 191

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LK    V+ +++     +G   +A     +M     C PD  TY+ +I   +K  R D  
Sbjct: 192 LKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT--CPPDSVTYNTMINGLSKSDRLDDA 249

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L EM   G   +  +YNT++ G+ KA + E        MV + GC PD+ +  ++I+
Sbjct: 250 IRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMV-TRGCPPDVVSYTTVIN 308

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                  +++  +  ++    G + ++ T   L   + R G  D    ++  M +R + P
Sbjct: 309 GLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRP 368

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             +TYN ++  F +   +E+  +  + M   G  P++I Y +++S + KAG + +   +L
Sbjct: 369 NAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLL 428

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            Q+       D    + +I A  +A  ++   EL        C PD + ++ +I A
Sbjct: 429 EQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHA 484



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 129/258 (50%)

Query: 181  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
            C P+++T++ILI    +        ++L EM   G+  + + +N +I G   A+K +   
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 241  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              F  M ESG C PD+FT ++++ +   SG ++   +   +    G   ++ T + L   
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
              +AG  D+  +++  M +    P +VTYN +I+   K G I++     ++M   G +PN
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 361  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             +TY  L+ A+ K G       ++  +     + +   +N ++  + +  +VE+  +L  
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS 1112

Query: 421  TMKERHCVPDNITFATMI 438
            +M ++ CVP+ +++ T+I
Sbjct: 1113 SMIQKGCVPNVVSYNTVI 1130



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 172/379 (45%), Gaps = 38/379 (10%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T++ L+  L K  + ++A+ L + M   G  P++  Y  ++  + + G +DEA+  + +M
Sbjct: 985  TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 1044

Query: 176  KSVSDCKPDVYTYSILIKS---CTK-----------------------------FHRFDL 203
                 C+P+V TY++L+ +   C K                             F + D 
Sbjct: 1045 VD-GGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDE 1103

Query: 204  IEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            +E+   +L+ M   G   + V+YNT+I G  KA K  E       M+ S  C PDI T N
Sbjct: 1104 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML-SNNCVPDIVTFN 1162

Query: 261  SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QK 319
            ++I A   +  ++   + +N     G   ++ T N L     ++  +D+   ++  M +K
Sbjct: 1163 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 1222

Query: 320  RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
            +   P ++TYN VI+   K+  +++  + F +M   G+ P+ +TY  ++S+  K   + +
Sbjct: 1223 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDE 1282

Query: 380  VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +++L  +  +        +  +I  + + G+++K  E+   +  +   PD +TF+  I 
Sbjct: 1283 ANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFID 1342

Query: 440  AYNALGMTEAAQNLENKMI 458
              +  G    A  L   M+
Sbjct: 1343 WLSKRGRLRQAGELLETML 1361



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 159/353 (45%), Gaps = 27/353 (7%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T++ ++  L K +  ++A+ + E+ML +G  P    Y  L+  + ++G LD+A   +  +
Sbjct: 1266 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 1325

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             S     PDV T+SI I   +K  R     ++L  M   G+    VTYNT++ G+  A  
Sbjct: 1326 LSKGS-YPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASL 1384

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMIS------------AYGNSGNIEKMEKWYNEFN 283
             E+    F  M + G C PD  T  +++             A  +   ++   K  +E +
Sbjct: 1385 TEDAVDLFEVMRQCG-CEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELS 1443

Query: 284  L-----MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                  + V+AD++    +   +G+ G     R V + M +R     VV ++ ++  +  
Sbjct: 1444 SKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR----NVVLWSAMLGVYVF 1499

Query: 339  AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENSDVILDTP 397
                E+    ++ M   G++P+++T+ SL++    AGL+   VD  +    +  +     
Sbjct: 1500 HKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVD 1559

Query: 398  FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             F+C+I   G+ G V +  +L L M    C P   T+  ++ AY   G  E A
Sbjct: 1560 HFSCVIDLLGRLGLVNEAEDLMLGMP---CKPSAATWNCLLSAYKICGDFERA 1609



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 252  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            C P++FT   +I     +G+I    +   E    GV  ++   N++ K    A   D   
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 312  SVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M++    P  V TY+ ++++  K+G ++      + M  +G  PN +TY SL+  
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 371  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
              KAG + +  ++L+++  S    +   +N II  + + G +++   L   M +  C P+
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 431  NITFATMIQAYNALGMTEAAQNLENKMI 458
             +T+  ++ A+   G  E A  L   M+
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMV 1080


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 158/299 (52%), Gaps = 2/299 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M +DG  P V  +T L+ A  + G +DEAF T++ MK      P+++TY+ LI    + +
Sbjct: 358 MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKK-QGVAPNLHTYNTLICGLLRLN 416

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R D   ++   M  LG+E +A TY   ID YGK+ +  +   +F  M ++ G  P+I   
Sbjct: 417 RLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKM-KTNGIVPNIVAC 475

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+ + +    G +E+ ++++N     G+  D  T NIL + YG+AG  D    ++  M++
Sbjct: 476 NASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE 535

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P VV  N +I+T  KA  +++  + F++MK   + P  +TY +L++   K G + +
Sbjct: 536 NGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQE 595

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             ++ + +   D   +T  FN ++    + G+V+   ++   M E +C PD +T+ T+I
Sbjct: 596 ATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVI 654



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 169/380 (44%), Gaps = 37/380 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV LGK +  E    L + M S GL+P++  +T  +   G++G +DEA+  +  
Sbjct: 228 KTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKR 287

Query: 175 MKSVSDCKPDVYTYSILIKSC-----------------------------TKFHRF---- 201
           M   + C PDV TY++LI +                              T   +F    
Sbjct: 288 MDD-AGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHG 346

Query: 202 --DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             D I++  +EM   G     VT+  +ID   K  K +E   +   M +  G  P++ T 
Sbjct: 347 DLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM-KKQGVAPNLHTY 405

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N++I        +++  + +N    +G++    T  +    YG++G   K     + M+ 
Sbjct: 406 NTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKT 465

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P +V  N  + +  + G +E+ +E+F  +K  G+ P++ITY  L+  Y KAG +  
Sbjct: 466 NGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDD 525

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +L ++E +    +    N +I    +A  V++  ++F  MKE    P  +T+ T++ 
Sbjct: 526 AIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLA 585

Query: 440 AYNALGMTEAAQNLENKMIA 459
                G  + A  L   MIA
Sbjct: 586 GLGKEGRVQEATALFKGMIA 605



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 2/348 (0%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K  K   A  +F  L +        + +  L+  L K +  E A  LF  M + G  P V
Sbjct: 764  KHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDV 823

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
              Y   + A G+SG + E F    +M     CKP+  T++I+I    K +  D    +  
Sbjct: 824  FTYNLFLDALGKSGKIKELFDLYEEM-LFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYY 882

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            ++       +  TY  +IDG  K  + EE +  F  M++ G C P+    N +++ +G  
Sbjct: 883  DLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYG-CMPNCPLYNILMNGFGKQ 941

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
            G++E   + +      G++ D+++ +I+       G  D      + ++     P +V Y
Sbjct: 942  GDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCY 1001

Query: 330  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            N++I   G++  +E+    F +M++RG+ P+  TY +L+     AG++ +   +  +++ 
Sbjct: 1002 NLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQL 1061

Query: 390  SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
              +  +   +N +I  +  +G+ ++   ++  M    C P+  TFA +
Sbjct: 1062 KGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 169/397 (42%), Gaps = 37/397 (9%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           + GLL++ +    R    TFT  + +LG+  + ++A  + + M   G  P V  YT L+ 
Sbjct: 246 VMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLID 305

Query: 158 AYGQSGLLDEA-------------------------FSTINDMKSVSDC---------KP 183
           A   +G L+ A                         FS   D+ ++ +           P
Sbjct: 306 ALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLP 365

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV T++ILI +  K  + D     L  M   G+  +  TYNT+I G  +  + +E    F
Sbjct: 366 DVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELF 425

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           ++M ES G     +T    I  YG SG   K  K + +    G+  +I   N    S   
Sbjct: 426 NSM-ESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAE 484

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G  ++ +   + ++K    P  +TYNI++  +GKAG ++   +   +M+  G  P  + 
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
             SL+    KA  + +   + ++++   +      +N +++  G+ G V++   LF  M 
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              C P+ I+F T++      G  + A  +  +M  M
Sbjct: 605 ADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEM 641



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 158/323 (48%), Gaps = 4/323 (1%)

Query: 145  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            + PS++ Y +L+    ++ L + A+     MK+ + C PDV+TY++ + +  K  +   +
Sbjct: 784  ITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKN-AGCTPDVFTYNLFLDALGKSGKIKEL 842

Query: 205  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
              +  EM + G + + +T+N +I G  K+   ++    +  ++ SG   P  +T   +I 
Sbjct: 843  FDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLM-SGDFSPTPWTYGPLID 901

Query: 265  AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                 G +E+ ++++ E    G   +    NIL   +G+ G  +    +   M K    P
Sbjct: 902  GLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRP 961

Query: 325  TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             + +Y+I+++     G ++    YF+++K  G+ P+ + Y  +++   ++  + +  S+ 
Sbjct: 962  DLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLF 1021

Query: 385  RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             ++ N  +  D   +N +I   G AG VE+ G+++  ++ +   P+  T+  +I+ ++  
Sbjct: 1022 DEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMS 1081

Query: 445  GMTEAAQNLENKMI--AMKENSG 465
            G  + A  +  KM+    + N+G
Sbjct: 1082 GNPDRAYAVYKKMMVGGCRPNTG 1104



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 160/389 (41%), Gaps = 37/389 (9%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           L Q+Q  +    T+  +  +L       +A +  E M   G   +   Y  L+    +SG
Sbjct: 147 LMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSG 206

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
              EA      M S    KP + TYS L+ +  K    + +  +L EM  LG+  +  T+
Sbjct: 207 FCREALKVYRRMVS-EGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTF 265

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-------------- 269
              I   G+A K +E       M +  GC PD+ T   +I A  N+              
Sbjct: 266 TICIRILGRAGKIDEAYGILKRM-DDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMK 324

Query: 270 ---------------------GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
                                G+++ ++++++E    G   D+ T  IL  +  + G  D
Sbjct: 325 ASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVD 384

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           +    +D M+K+   P + TYN +I    +   +++  E F  M+  G++  + TY   +
Sbjct: 385 EAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFI 444

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             Y K+G   K      +++ + ++ +    N  + +  + G +E+  E F  +K+    
Sbjct: 445 DYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLA 504

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
           PD IT+  +++ Y   G  + A  L ++M
Sbjct: 505 PDAITYNILMRCYGKAGRVDDAIKLLSEM 533



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 70/136 (51%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P++ TY+ ++   GK   IE +    ++M+  G++PN  T+   +    +AG I +   I
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGI 284

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L++++++    D   +  +I A   AG +    ELFL MK     PD +T+ T++  ++ 
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSD 344

Query: 444 LGMTEAAQNLENKMIA 459
            G  +A +   ++M A
Sbjct: 345 HGDLDAIKEFWSEMEA 360



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 273 EKMEKWYNEFNLMG---VKADIQT-LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            ++E     FNLM    +K  I T L I    Y R G+ +     ++ M+K  F     +
Sbjct: 136 RRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREA-PVALEKMRKVGFVLNGYS 194

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I    K+G   +  + +++M   G+KP+  TY +L+ A  K   I  V  +L+++E
Sbjct: 195 YIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEME 254

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +  +  +   F   I   G+AG +++   +   M +  C PD +T+  +I A    G   
Sbjct: 255 SLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLN 314

Query: 449 AAQNLENKMIA 459
            A+ L  KM A
Sbjct: 315 NAKELFLKMKA 325


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 166/342 (48%), Gaps = 8/342 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  L+   G+    ++ + +   M   G++P +  YT L+ A+G++G L   +    DM+
Sbjct: 101 FDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMR 160

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKA 233
                +P+V  Y+ +I +  K      +E+  AEM   S  G+E +  TYN ++  YG+ 
Sbjct: 161 E-QGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQ 219

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +  ++ME+    M    G   D FT +++++A+  +G ++K  + ++     G +  +  
Sbjct: 220 QMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHA 279

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              +    G AG  D+M   +D M++    P+   YN +I  FGKA +I  M + FK M+
Sbjct: 280 WTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMR 339

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDS--ILRQVENSDVILDTPFFNCIISAYGQAGD 411
             G+  +  TY +L+  ++K G  ++ +   +L + E     + T     ++ AY +A  
Sbjct: 340 RDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYT--IASLMDAYTRADQ 397

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            EK+  L   MK+    PDN+ F  +I  Y  +G  E A+ +
Sbjct: 398 FEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKV 439



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 144/311 (46%), Gaps = 40/311 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  ++   G+ +  ++   L E M +D GL      ++A+V+A+ ++G +D+A    + 
Sbjct: 208 TYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDS 267

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           + + +  +P ++ ++ ++       R D + + L +M  LG++ S   YNTII+ +GKA+
Sbjct: 268 I-AATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKAR 326

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               M  +F AM    G   D+ T N++I  +  +G   + EK+Y      G++  + T+
Sbjct: 327 NIHSMMDTFKAM-RRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTI 385

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-------------- 340
             L  +Y RA  ++K+  ++  M+K    P  V +N++I+T+G+ G              
Sbjct: 386 ASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMK 445

Query: 341 ----------------------HIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAGLI 377
                                 +++K EE+  +M      KP+  T  +L+S    A  +
Sbjct: 446 EYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKTLTTLLSFCIPAADV 505

Query: 378 MKVDSILRQVE 388
            +   ++  +E
Sbjct: 506 KRGRRVIHMIE 516


>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
 gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
          Length = 519

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 189/432 (43%), Gaps = 42/432 (9%)

Query: 32  KRSPGPIQELGIQKEAEKD--LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAI 89
           +R  G   E G+ + AE    +  +LR     K     V  +  + +  +      +E  
Sbjct: 39  RRGAGAAGEEGVDEAAEAAELVRSVLRRTAGGKERLVPVLDRHVRGVRTEHCFLLFEELG 98

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  W   L++F  +++Q+WY A    ++KL+ ++G+  Q   A  LF  M + G KP  
Sbjct: 99  RRDAWLQCLEVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDT 158

Query: 150 DVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
            VY +L+ A+     +S  L +A      MK ++ C+P +                    
Sbjct: 159 SVYNSLIGAHLHSRDKSKALAKALGYFEKMKCIARCQPTI-------------------- 198

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
                          VTYN ++  + +A   ++++  F  + ES    PDI+T N ++ A
Sbjct: 199 ---------------VTYNILLRAFAQAGDTKQVDILFKDLDESV-VSPDIYTYNGVLDA 242

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           YG +G I++ME           + D+ T NIL  SYGR  ++DKM  V   + +    PT
Sbjct: 243 YGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPT 302

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             T+N +I  +GKA   EK E   KKM+  G KPN +T   L+  Y+    + K   +  
Sbjct: 303 HPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVFD 362

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++ +S   +     N ++ AY   G   +  +L  T  ++  VP+  T+  + +AY    
Sbjct: 363 ELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTYKLLYKAYTRAN 422

Query: 446 MTEAAQNLENKM 457
                Q L  +M
Sbjct: 423 DKVLVQKLLKRM 434



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 6/242 (2%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 281
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 126 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKSKALAKALGY 184

Query: 282 FNLMGVKADIQ----TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
           F  M   A  Q    T NIL +++ +AG   ++  +   + +    P + TYN V++ +G
Sbjct: 185 FEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYG 244

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G I++ME    +MK +  +P+ IT+  L+ +Y +  +  K++ + + +  S      P
Sbjct: 245 KNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHP 304

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        A+ + +++
Sbjct: 305 TFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVFDEL 364

Query: 458 IA 459
           ++
Sbjct: 365 VS 366


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 179/395 (45%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L +   + ++  Y      +  ++  + + KQ + A  LF+ M    L P  
Sbjct: 131 RENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDR 190

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L++++G+ G+ D A S +  M+       D+  YS LI+   +   +     I +
Sbjct: 191 YTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDLVLYSNLIELSRRLCDYSKAISIFS 249

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------- 250
            +   GI    V YN++I+ YGKAK F E       M E+G                   
Sbjct: 250 RLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENH 309

Query: 251 ---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                           C  D+ T N MI  YG    +++ ++ +     M ++ ++ + N
Sbjct: 310 KFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 369

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + + YG A ++ +   +   MQ++     VVTYN +I+ +GK    EK     ++M+ R
Sbjct: 370 TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 429

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +  ++ +++ +S V +D   +  +I AY + G +   
Sbjct: 430 GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHA 489

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K    +PDNI   T I      G TE A
Sbjct: 490 KRLLHELK----LPDNIPRETAITILAKAGRTEEA 520



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 8/361 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK--PSVDVYTALV 156
           ++F LL     Y+ R Q   + MV L   +   Q SL     + +  K  PSV  Y  ++
Sbjct: 107 ELFSLLST---YKDR-QLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVL 162

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               ++   D A    ++M+  +   PD YTYS LI S  K   FD     L +M    +
Sbjct: 163 RNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRV 221

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
               V Y+ +I+   +   + +  S FS +  SG   PD+   NSMI+ YG +    +  
Sbjct: 222 SGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSG-ITPDLVAYNSMINVYGKAKLFREAR 280

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E N  GV  +  + + L   Y     + +  SV   M++      + T NI+I+ +
Sbjct: 281 LLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY 340

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           G+   +++ +  F  ++   ++PN ++Y +++  Y +A L  +   + R ++  D+  + 
Sbjct: 341 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNV 400

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I  YG+  + EK   L   M+ R   P+ IT++T+I  +   G  + A  L  K
Sbjct: 401 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 460

Query: 457 M 457
           +
Sbjct: 461 L 461



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 37/334 (11%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+    ++A  LF  +    ++P+V  Y  ++  YG++ L  EA      M+   D + +
Sbjct: 341 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 399

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +   + F 
Sbjct: 400 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 459

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 284
            +  S G   D     +MI AY   G +   ++  +E  L                    
Sbjct: 460 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTE 518

Query: 285 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                       G   DI     +   Y R   Y  +  V + M+   +FP      +V+
Sbjct: 519 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVL 578

Query: 334 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
             +GK    EK +  +++M+  G + P+ + +  ++S YS       V+S+ +++E SD 
Sbjct: 579 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFQRLE-SDP 636

Query: 393 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 425
            +++   + +++A Y +A  +     +   M+ER
Sbjct: 637 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 670


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 185/345 (53%), Gaps = 10/345 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +  + A++++  +++++  +   +T+T ++ + GK KQP  +  +F  M + G
Sbjct: 242 LDGLLKARCSEKAVEVYQRMKKER-CRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIG 300

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++       
Sbjct: 301 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGA 359

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+A   +E E++F  + + G   P + +   ++S
Sbjct: 360 SEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQG-MRPTMKSHMLLLS 418

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF- 323
           A+  SGN+ + E+   + +  G++ D   LN +  +YGRAG  D M  ++  M++     
Sbjct: 419 AHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDD 478

Query: 324 ------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
                 P   TYN+++  +G+AG++++ME  F+ +  RG+  + +T+ S + AY++    
Sbjct: 479 AGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEY 538

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +   I  ++ ++    D      +++A      VE++  +  +M
Sbjct: 539 GRCLEIFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSM 583



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 181/378 (47%), Gaps = 10/378 (2%)

Query: 75  NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           +LW   V  A+   +  ++W+  + +   +  +  ++     +  L+   G+ +Q  +A 
Sbjct: 127 DLWDDIVNVAVQLRL-NRQWEPIITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAE 185

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            ++  +L     P+ D Y  L+ AY  SG L  A   I++M+  +   P    Y+  +  
Sbjct: 186 SIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQK-NGLPPTATVYNAYLDG 244

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K    +   ++   M       +  TY  +I+ YGKAK+       F+ M ++ GC P
Sbjct: 245 LLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEM-KTIGCKP 303

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +I T  ++++A+   G  EK E+ + E    G + D+   N L ++Y RAG+      + 
Sbjct: 304 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 363

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M+     P   +YNI+++ +G+AG  ++ E  F+++K +GM+P   ++  L+SA++K+
Sbjct: 364 SLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKS 423

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-------RHC 427
           G + + + ++ Q+  S +  DT   N +++AYG+AG ++ M  L   M+           
Sbjct: 424 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGA 483

Query: 428 VPDNITFATMIQAYNALG 445
            PD  T+  ++  Y   G
Sbjct: 484 APDTSTYNVLVNVYGRAG 501



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 150/319 (47%), Gaps = 2/319 (0%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++     +P +  Y  L+ AYGQ   L++A S    +   + C P   TY++L+++    
Sbjct: 155 ILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLE-AHCVPTEDTYALLLRAYCNS 213

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
            +    E +++EM   G+  +A  YN  +DG  KA+  E+    +  M +   C  +  T
Sbjct: 214 GQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKER-CRTNTET 272

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
              MI+ YG +       K +NE   +G K +I T   L  ++ R G+ +K   V + MQ
Sbjct: 273 YTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 332

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 333 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQ 392

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           + ++  ++++   +         ++SA+ ++G+V +  E+   + +    PD      M+
Sbjct: 393 EAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAML 452

Query: 439 QAYNALGMTEAAQNLENKM 457
            AY   G  +  + L   M
Sbjct: 453 NAYGRAGRLDDMERLLGAM 471



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 164/333 (49%), Gaps = 9/333 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+       Q  +A  +   M  +GL P+  VY A +    ++   ++A      M
Sbjct: 202 TYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRM 261

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C+ +  TY+++I    K  +     K+  EM  +G + +  TY  +++ + +   
Sbjct: 262 KK-ERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGL 320

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+ E  F  M ++G   PD++  N+++ AY  +G  +   + ++    MG + D  + N
Sbjct: 321 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYN 379

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL  +YGRAG++ +  +    ++++   PT+ ++ +++    K+G++ + EE   ++   
Sbjct: 380 ILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKS 439

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-------DTPFFNCIISAYGQ 408
           G++P++    ++++AY +AG +  ++ +L  +E             DT  +N +++ YG+
Sbjct: 440 GLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGR 499

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           AG +++M   F  +  R    D +T+ + I AY
Sbjct: 500 AGYLDRMEAAFRALAARGLAADVVTWTSRIGAY 532



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 155/324 (47%), Gaps = 9/324 (2%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K +  E+A  +++ M  +  + + + YT +++ YG++     +    N+MK++  CKP
Sbjct: 245 LLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIG-CKP 303

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 304 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 363

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M E  GC PD  + N ++ AYG +G  ++ E  + E    G++  +++  +L  ++ +
Sbjct: 364 SLM-EHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAK 422

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK----- 358
           +G   +   VM  + K    P     N ++  +G+AG ++ ME     M+  G       
Sbjct: 423 SGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGG 482

Query: 359 --PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             P++ TY  LV+ Y +AG + ++++  R +    +  D   +   I AY +  +  +  
Sbjct: 483 AAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCL 542

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           E+F  M +  C PD  T   ++ A
Sbjct: 543 EIFEEMVDAGCYPDAGTAKVLLAA 566


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 182/367 (49%), Gaps = 7/367 (1%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
            L   ++ KKW LA  +F  +RQ+     R  T++ L+   GK    +++    + M  D
Sbjct: 140 VLRNVLRAKKWDLAHGLFDEMRQRALSPDRY-TYSTLITSFGKAGMFDESLFWLQQMEQD 198

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            +   + +Y+ L+    +     +A S    +K  S   PD+  Y+ +I    K   F  
Sbjct: 199 RVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKR-SGITPDLVAYNSMINVFGKARLFRE 257

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              ++ EM  +G+    V+Y+T++  Y + +KF E  S F+ M E+  C  D+ T N MI
Sbjct: 258 ARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAN-CSLDLMTCNIMI 316

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             YG    +++ ++ +     MG++ ++ + N L K YG A ++ +   +   MQ++   
Sbjct: 317 DVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIE 376

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             VVTYN +I+ +GK+   EK     ++M+ RG++PN+ITY +++S + KAG + +   +
Sbjct: 377 QNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAML 436

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            +++ +S V +D   +  +I AY +AG V     L   +K   C PD I   T I+    
Sbjct: 437 FQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLK---C-PDIIPRDTAIKILAR 492

Query: 444 LGMTEAA 450
            G  E A
Sbjct: 493 AGRIEEA 499



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 173/364 (47%), Gaps = 2/364 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L +   + +   Y      +  ++  + + K+ + A  LF+ M    L P  
Sbjct: 110 QEADWQRSLALLDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDR 169

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L++++G++G+ DE+   +  M+       D+  YS LI+   K   +     I  
Sbjct: 170 YTYSTLITSFGKAGMFDESLFWLQQMEQ-DRVSGDLVLYSNLIELSRKLCDYSKAISIFM 228

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            +   GI    V YN++I+ +GKA+ F E       M E G   PD  + ++++S Y  +
Sbjct: 229 RLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVG-VLPDTVSYSTLLSVYVEN 287

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
               +    + E N      D+ T NI+   YG+  M  +   +   M+K    P VV+Y
Sbjct: 288 EKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSY 347

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++ +G+A    +    F+ M+ + ++ N +TY +++  Y K+    K  +++++++ 
Sbjct: 348 NTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQK 407

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  +   ++ IIS +G+AG +++   LF  ++      D + + TMI AY   G+   
Sbjct: 408 RGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAH 467

Query: 450 AQNL 453
           A+ L
Sbjct: 468 AKRL 471



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 152/337 (45%), Gaps = 34/337 (10%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +VS   Q      + + ++ +  V+   P V+ Y++++++  +  ++DL   +  EM   
Sbjct: 104 MVSLISQEADWQRSLALLDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQR 163

Query: 215 GIECSAVTYNTIIDGYGKAKKFEE-------MESS--------FSAMVE----------- 248
            +     TY+T+I  +GKA  F+E       ME          +S ++E           
Sbjct: 164 ALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKA 223

Query: 249 --------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                     G  PD+   NSMI+ +G +    +     +E   +GV  D  + + L   
Sbjct: 224 ISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSV 283

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y     + +  SV   M +      ++T NI+I+ +G+   +++ +  F  M+  G++PN
Sbjct: 284 YVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPN 343

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+  Y +A L  +   + R ++  ++  +   +N +I  YG++ + EK   L  
Sbjct: 344 VVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQ 403

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M++R   P+ IT++T+I  +   G  + A  L  K+
Sbjct: 404 EMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKL 440



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 22/320 (6%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+    ++A  LF  M   G++P+V  Y  L+  YG++ L  EA      M+   + + +
Sbjct: 320 GQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQR-KEIEQN 378

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +     F 
Sbjct: 379 VVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQ 438

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            +  S G   D     +MI AY  +G +   ++  ++        DI   +   K   RA
Sbjct: 439 KL-RSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKC----PDIIPRDTAIKILARA 493

Query: 305 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           G  ++     R   D  + +     +  +  +IE F +      + E F+KM+  G  P+
Sbjct: 494 GRIEEATWVFRQAFDAGEVK----DISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPD 549

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 419
           S     +++AY K     K D++ R+++  + +        ++S YG   D   +  LF 
Sbjct: 550 SDVIALVLNAYGKLREFEKADAVYREMQEEECVFPDEVHFQMLSLYGARKDFIMVESLFE 609

Query: 420 -------LTMKERHCVPDNI 432
                  +  KE H V  +I
Sbjct: 610 KLDSDPNINKKELHLVVASI 629


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 169/362 (46%), Gaps = 7/362 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV----MLSDGLKPSVDVYTALV 156
           F LL Q        +  T  +++ G CK+ E  +    V    M+  GL P V  + +++
Sbjct: 156 FSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               +   + +A +          C+P+V TYS LI   +K  + D   ++LA+M  LG 
Sbjct: 216 DGLCKEQRILDAHNVFKRALE-RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGC 274

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + VTY+T++DG  K  + E+       M ++G C PD  T N++I  +     + +  
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG-CLPDAVTYNTLIDGFFKRQRLREAV 333

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E    G    + T   L     R+G +D+   ++D+M  R   P  +TY+ +++  
Sbjct: 334 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 393

Query: 337 GKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            KAG + +   YF+KM +   + P+ I Y +L+    KAG I +    L ++  +  I D
Sbjct: 394 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD 453

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              F+ +I+    AG ++   ELF  M ER CVPD +T+AT++         + A +L  
Sbjct: 454 VVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQ 513

Query: 456 KM 457
           +M
Sbjct: 514 QM 515



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 174/382 (45%), Gaps = 14/382 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +K   A+ +F  +  +  Y     T+  L+  LGK ++ ++A  LFE   + G
Sbjct: 2   IDGLCKSRKVDKAITLFKQMVDKAIYPD-VVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+V  Y  ++    + G ++ A +  +DM      +P V TYS LI    + H  D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 205 EKILAEMSYLGIECSAVTYNTIID---GYGKAKKFEEMESSFSAM--VESGGCHPDIFTL 259
            K+L EM+  G   +AVTYNT+++   G G++K+      +FS +  + + GC P++ T 
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE------AFSLLEQMAANGCPPELITF 174

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             +I      G IE   +  +E  ++  G+  D+ T N +     +        +V    
Sbjct: 175 GLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 234

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +R   P VVTY+ +I+   K   +++  +   KM   G + N++TY ++V    K G +
Sbjct: 235 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 294

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                +LRQ+ ++  + D   +N +I  + +   + +   L   M E    P  +T+ T+
Sbjct: 295 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 354

Query: 438 IQAYNALGMTEAAQNLENKMIA 459
                  G  + A  + + M A
Sbjct: 355 CHGLCRSGRFDEAVEILDYMAA 376



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 10/346 (2%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G CK+     A  +F+  L  G +P+V  Y+ L+    +   +DEA   +  M  + 
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C+ +  TYS ++    K  R +    +L +M   G    AVTYNT+IDG+ K ++  E 
Sbjct: 274 -CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                 M+E+G  HP + T  ++      SG  ++  +  +     G   +  T + +  
Sbjct: 333 VGLLREMLEAG-FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD 391

Query: 300 SYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              +AG   +     + M +     P V+ Y+ +I+   KAG I++  E+ ++M   G  
Sbjct: 392 GLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI 451

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+ +T+  L++    AG I     + R +     + D   +  ++    +A  V++  +L
Sbjct: 452 PDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDL 511

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           F  M+     PD  T  TMI      G+ E  ++ + K I  +ENS
Sbjct: 512 FQQMRSDGLSPDRSTRRTMIH-----GLLEVNRDEDAKRIQDEENS 552



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 2/284 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  K   AL++   +  +   +A   T++ ++  L K  + E A ++   M   G
Sbjct: 250 IDGLSKMAKMDEALQLLAKM-VELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG 308

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    Y  L+  + +   L EA   + +M       P V TY+ L     +  RFD  
Sbjct: 309 CLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG-FHPSVVTYTTLCHGLCRSGRFDEA 367

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +IL  M+  G   +A+TY++I+DG  KA +  E    F  M       P +   +++I 
Sbjct: 368 VEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALID 427

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +G I++  ++       G   D+ T +IL      AG  D    +   M +R   P
Sbjct: 428 GLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVP 487

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
            +VTY  +++   +A  +++  + F++M+  G+ P+  T  +++
Sbjct: 488 DMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMI 531



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 10/276 (3%)

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    K  + D    +  +M    I    VTY  +IDG GK ++ +E    F     + 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEE-ARAK 59

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQTLNILTKSYGRAGMYDK 309
           GCHP + T N+MI      G IE     Y++  +  G +  + T + L     R    DK
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              +++ M  R   P  VTYN ++      G  ++     ++M   G  P  IT+  ++ 
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIK 179

Query: 370 AYSKAGLIMKVDSILRQVEN-----SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
              K G   ++++  R V+      S +  D   FN ++    +   +     +F    E
Sbjct: 180 GLCKEG---EIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALE 236

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           R C P+ +T++T+I   + +   + A  L  KM+ +
Sbjct: 237 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 272


>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
 gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
          Length = 451

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 134/261 (51%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PS+  Y  L  A  Q+GL D+A +   ++    D KPD YT++ ++ +  K   +  +E 
Sbjct: 169 PSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRDMEY 228

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            L EMS  G+    VT+N +ID YG+A  F +ME ++ ++V   GC P   T NSM+++Y
Sbjct: 229 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 288

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G S  + KME+     ++ G+  D+ T N L  SYGRAG  D MR   D M +    P V
Sbjct: 289 GQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQV 348

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T ++++  + + G +++ E  F       +KP   +Y  L  AY +   + K+  ++ +
Sbjct: 349 STLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLDKMTVLMSK 408

Query: 387 VENSDVILDTPFFNCIISAYG 407
           +E S V     F    + +Y 
Sbjct: 409 MEQSGVESGQEFLLQALESYA 429



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 181/384 (47%), Gaps = 28/384 (7%)

Query: 61  IKNIEKKVSSK-----KYKNLWPKPVLEAL-DEAIKQKKWQLALKIFGLLRQQQWYQARC 114
           +  ++ K SSK     KY    P     AL DE  +   W LAL +F  L++ +   AR 
Sbjct: 36  LHELQDKKSSKSHVLDKYARHIPVDGFMALVDEIGRLNDWALALALFKWLQKNE---ARL 92

Query: 115 Q------TFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQ----SG 163
                     K++  +GK  Q   AS +F ++ LS    P   V  A++ A+ +    + 
Sbjct: 93  SNRDLEVAHAKIIDTMGKQGQLRLASWIFSQLQLSSRTTP---VLNAIIMAHLRCKNVAR 149

Query: 164 LLDEAFSTINDMK-SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAV 221
            LD A      MK SV  C P + TY++L ++C +    D  E +  E+     ++  A 
Sbjct: 150 ALDSALDHFGHMKTSVHSC-PSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAY 208

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           T+N I+D Y K   + +ME     M E G   PD+ T N +I AYG +G+  KME+ Y  
Sbjct: 209 TFNGIMDAYAKKGLYRDMEYKLKEMSEHG-VRPDLVTFNVLIDAYGRAGDFVKMERTYKS 267

Query: 282 F-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
             NL G K    T N +  SYG++    KM  V+  M      P + T+N ++ ++G+AG
Sbjct: 268 LVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAG 327

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            ++ M + F KM    +KP   T   L+ AY++ GL+ + +++       D+      + 
Sbjct: 328 ELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYL 387

Query: 401 CIISAYGQAGDVEKMGELFLTMKE 424
            +  AYG+   ++KM  L   M++
Sbjct: 388 ILFKAYGEERQLDKMTVLMSKMEQ 411


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 178/390 (45%), Gaps = 40/390 (10%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           +R   W      T+  L   L K    + A  +FE M SDG+ P+  +   LVS++ + G
Sbjct: 99  IRHSFW------TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKG 152

Query: 164 --------------------LLDEAFSTINDMKSVSD-------------CKPDVYTYSI 190
                               +++   +T+  +  V D             C  D  T++I
Sbjct: 153 KLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCN-DTKTFNI 211

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI+      + +   ++L  MS  G     VTYNT+I G+ K+ + ++    F  +  S 
Sbjct: 212 LIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSS 271

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC PD+ T  SMIS Y  +G +++     ++   +G+     T N+L   Y +AG     
Sbjct: 272 GCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTA 331

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M     FP VVT+  +I+ + + G + +    +++M  RGM PN+ TY  L++A
Sbjct: 332 EEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINA 391

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K   ++K   +L Q+ + D+I     +N +I  + +AG V +   +   M+++ C PD
Sbjct: 392 LCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPD 451

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAM 460
            ITF  +I  +   G    A ++ +KM+A+
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAI 481


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 169/352 (48%), Gaps = 4/352 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG  ++ + Y      FT   ++ G CK+  P+QA  L + M   GL P+V VY+ L+  
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G  DEAF  + +M S +  +P+  TY  LI+   K  R     +IL +M+ +G   
Sbjct: 358 FMRQGNADEAFKIVKEM-SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMA 416

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             +TYN +I+G+ +    EE     + M   GG  P+++T + +I+     G  E+    
Sbjct: 417 DTMTYNLVIEGHLRQHNKEEAFLLLNEM-RKGGISPNVYTYSIIINGLCQIGESERASGL 475

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +    G+K +      L   Y R G +      +  M +    P +  YN +I     
Sbjct: 476 LEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSN 535

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +++  EY+ +M  +G +PN  TY  L+  YS AG + K + +L Q+ NS +  +   
Sbjct: 536 VGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFI 595

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +  I+  Y ++ ++EK+     +M E+  +PDN  +  +I   ++ G  +AA
Sbjct: 596 YAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAA 647



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K +  E A  + E M   G   +V  Y  L+    ++G ++EAF    +M
Sbjct: 245 TYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEM 304

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PD +TY  +I    K  R D  + +L EMS  G+  + V Y+T+IDG+ +   
Sbjct: 305 EDYG-LVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGN 363

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       M  + G  P+  T +++I      G + +  +   +   +G  AD  T N
Sbjct: 364 ADEAFKIVKEM-SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYN 422

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ + + R    ++   +++ M+K    P V TY+I+I    + G  E+     ++M   
Sbjct: 423 LVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIAD 482

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN+  Y  L+S Y + G        L+++   ++  D   +N +I      G +++ 
Sbjct: 483 GLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEA 542

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            E +  M E+   P++ T+  +I  Y+  G  E A+ L ++M+    NSG
Sbjct: 543 IEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML----NSG 588



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 160/361 (44%), Gaps = 4/361 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +        +T  +++ G C+  + E+AS L E M++DGLKP+  VY  L+S 
Sbjct: 438 FLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISG 497

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G    A  T+  M +  +  PD+Y Y+ LI   +   + D   +   EM   G + 
Sbjct: 498 YCREGSFSLACETLKKM-TRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQP 556

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +  TY  +I GY  A   E+ E     M+ SG  +P+ F    ++  Y  S N+EK+   
Sbjct: 557 NDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSG-LNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                  G+  D +   I+  +   +G      SV+  ++K    P  + Y  +I  F K
Sbjct: 616 LKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCK 675

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           A  +EK      +M  +G++P    Y +L+  + K+  I    +I   +    +  +   
Sbjct: 676 AADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVT 735

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +I  Y +AGD+    +L+  M      PD   ++ +    +  G  + A  +  +MI
Sbjct: 736 YTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMI 795

Query: 459 A 459
           A
Sbjct: 796 A 796



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 165/359 (45%), Gaps = 6/359 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           +L+Q         T T  +V+ G  +Q   E+A LL   M   G+ P+V  Y+ +++   
Sbjct: 405 ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLC 464

Query: 161 QSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
           Q G  + A   +  M  ++D  KP+ + Y+ LI    +   F L  + L +M+   +   
Sbjct: 465 QIGESERASGLLEQM--IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPD 522

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
              YN++I G     K +E    +  M+E G   P+ FT   +I  Y  +GN+EK E+  
Sbjct: 523 LYCYNSLIIGLSNVGKMDEAIEYYDEMLEKG-FQPNDFTYGGLIHGYSMAGNLEKAEQLL 581

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           ++    G+  +      + + Y ++   +K+ S +  M ++   P    Y IVI     +
Sbjct: 582 HQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSS 641

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           GH++        ++  G+ P+S+ Y SL+S + KA  + K   +L ++    +      +
Sbjct: 642 GHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCY 701

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           N +I  + ++ D+     +F ++  +   P+ +T+ T+I  Y   G    A +L N+M+
Sbjct: 702 NALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEML 760



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 4/316 (1%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           V   LV  Y ++G + +    +  MK +    P +   + L+K   +    DL+ K+   
Sbjct: 175 VLDVLVDTYKKTGRVRDGAEVVLLMKDLG-LAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   GI     TY+T+I+ Y K +  E  +     M E+G C  ++ T N++I     +G
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETG-CSLNVVTYNTLIGGLCRAG 292

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            IE+   +  E    G+  D  T   +     + G  D+ + ++D M      P VV Y+
Sbjct: 293 AIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+ F + G+ ++  +  K+M   G++PN ITY +L+    K G + +   IL+Q+   
Sbjct: 353 TLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKI 412

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             + DT  +N +I  + +  + E+   L   M++    P+  T++ +I     +G +E A
Sbjct: 413 GYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERA 472

Query: 451 QNLENKMIA--MKENS 464
             L  +MIA  +K N+
Sbjct: 473 SGLLEQMIADGLKPNA 488



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIF 101
           G  K A+ + +  L  E A K IE  +S   Y  L        +D   K      A  IF
Sbjct: 672 GFCKAADMEKAVGLLDEMAKKGIEPGISC--YNAL--------IDGFCKSDDISHARNIF 721

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
             +   +     C T+T L+    K      A  L+  ML++G+ P   VY+ L +    
Sbjct: 722 NSI-ICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSN 780

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           SG L +A     +M  ++     + +++ L+    K  +     K L  M    I  S +
Sbjct: 781 SGDLQQALFITEEM--IARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLL 838

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           T   I+ G G+A K  E  + F  + +    H D   L+S+ +   N G
Sbjct: 839 TVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQG 887


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 169/340 (49%), Gaps = 4/340 (1%)

Query: 103 LLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL + +WY  R   + +  L+    +  Q +Q   +  ++   G+  +   Y  L+ AY 
Sbjct: 304 LLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYA 363

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++GL+D   +   +M+   D +P+ Y Y+ +I       ++    K+L EM   G+   A
Sbjct: 364 RAGLMDRLEALYQEMRDC-DIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDA 422

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             YN II+ +G+ ++ E+   +F  M + GG  PD+ + NS+I A   +G   +  K Y 
Sbjct: 423 HVYNVIINTFGRTRQLEQARIAFFKM-QDGGIEPDVVSWNSLIDACCKAGQPLEARKLYY 481

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +    G     QT NI+    G    ++ +  +++ M+ +  FP VVTY  +++ + +A 
Sbjct: 482 KMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQAR 541

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             +   E  + MK  GM P+   Y +L +AY++ G+  +   +L+ +E  ++ ++    N
Sbjct: 542 LFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLN 601

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +I+A+  AG  ++   +F  +KE     D IT+ T+++A
Sbjct: 602 LLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKA 641



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 154/312 (49%), Gaps = 11/312 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE-----K 206
           Y ALV AY Q+    +A  T++ MK++    PDV +Y+ +I++C    R  +++     +
Sbjct: 179 YNALVGAYAQNRDYGKALETLSKMKTLG-FPPDVVSYTHVIQAC----RHGVVDIYTGFR 233

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G++     YN +I   G+A K  E    F   +++ G   D  +  S++ + 
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNE-GMFFLEKLQASGLVADRDSYISLMLSL 292

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G  G   + E    E    G++ +++  N L   Y R G   ++ +V   ++        
Sbjct: 293 GKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINK 352

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TY ++I+ + +AG ++++E  +++M+   ++PN+  Y  +++ Y   G   K   +LR+
Sbjct: 353 ITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLRE 412

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++ + V  D   +N II+ +G+   +E+    F  M++    PD +++ ++I A    G 
Sbjct: 413 MQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQ 472

Query: 447 TEAAQNLENKMI 458
              A+ L  KM+
Sbjct: 473 PLEARKLYYKMV 484



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 158/358 (44%), Gaps = 4/358 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  Q   + +  L+   G+  +P +     E + + GL    D Y +L+ + G+ G  
Sbjct: 239 QAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRT 298

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA + + +MK     +P++  Y+ L+   ++  +   I+ +   +   G+  + +TY  
Sbjct: 299 AEAEALLEEMKWYG-LRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCL 357

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +ID Y +A   + +E+ +  M +     P+ +    MI+ Y ++G  +K  K   E    
Sbjct: 358 LIDAYARAGLMDRLEALYQEMRDC-DIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQA 416

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GV  D    N++  ++GR    ++ R     MQ     P VV++N +I+   KAG   + 
Sbjct: 417 GVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEA 476

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + + KM + G  P + T+  ++    +      V+ ++ ++ +  +  +   +  ++  
Sbjct: 477 RKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDV 536

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           Y QA   +   E   TMKE    P    ++ +  AY  LGM E  Q L       KEN
Sbjct: 537 YAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCE--QTLHVLQTMEKEN 592



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 145/306 (47%), Gaps = 2/306 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF+ M ++G++    VY  L+ A GQ+   +E    +  +++ S    D  +Y  L+ S 
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQA-SGLVADRDSYISLMLSL 292

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R    E +L EM + G+  +   YNT++ GY +  + +++++    ++   G   +
Sbjct: 293 GKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDT-VKTLLRDTGMSIN 351

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T   +I AY  +G ++++E  Y E     ++ +      +   Y   G + K   ++ 
Sbjct: 352 KITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLR 411

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ+    P    YN++I TFG+   +E+    F KM+  G++P+ +++ SL+ A  KAG
Sbjct: 412 EMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAG 471

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
             ++   +  ++ N         FN +I   G+      + E+   M+ +   P+ +T+ 
Sbjct: 472 QPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYT 531

Query: 436 TMIQAY 441
           T++  Y
Sbjct: 532 TLVDVY 537



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 135/286 (47%), Gaps = 17/286 (5%)

Query: 93  KWQLALKIFGLLR--QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           +WQ  +K   LLR  QQ         +  ++   G+ +Q EQA + F  M   G++P V 
Sbjct: 402 QWQKGVK---LLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVV 458

Query: 151 VYTALVSAYGQSGLLDEA----FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
            + +L+ A  ++G   EA    +  +ND      C P   T++I+I    +  R++ + +
Sbjct: 459 SWNSLIDACCKAGQPLEARKLYYKMVND-----GCAPTAQTFNIVIHGLGEHKRWNDVNE 513

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISA 265
           ++ EM   G+  + VTY T++D Y +A+ F++       M E G G  P  ++  ++ +A
Sbjct: 514 MVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYS--ALANA 571

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           Y   G  E+            ++ ++  LN+L  ++  AG   +  +V +++++      
Sbjct: 572 YAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTAD 631

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +TY  +++   +A  ++++   F +M   G +P+      L SA+
Sbjct: 632 KITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKAKDMLRSAF 677


>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
 gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
          Length = 449

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 134/261 (51%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PS+  Y  L  A  Q+GL D+A +   ++    D KPD YT++ ++ +  K   +  +E 
Sbjct: 167 PSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLYRDMEY 226

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            L EMS  G+    VT+N +ID YG+A  F +ME ++ ++V   GC P   T NSM+++Y
Sbjct: 227 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 286

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G S  + KME+     ++ G+  D+ T N L  SYGRAG  D MR   D M +    P V
Sbjct: 287 GQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQV 346

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T ++++  + + G +++ E  F       +KP   +Y  L  AY +   + K+  ++ +
Sbjct: 347 STLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLDKMTVLMSK 406

Query: 387 VENSDVILDTPFFNCIISAYG 407
           +E S V     F    + +Y 
Sbjct: 407 MEQSGVESGQEFLLQALESYA 427



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 182/384 (47%), Gaps = 28/384 (7%)

Query: 61  IKNIEKKVSSK-----KYKNLWPKPVLEAL-DEAIKQKKWQLALKIFGLLRQQQWYQARC 114
           +  ++ K SSK     KY    P     AL DE  +   W LAL +F  L++ +   AR 
Sbjct: 34  LHELQDKKSSKSHVLDKYARHIPVDGFMALVDEIGRLNDWALALALFKWLQKNE---ARL 90

Query: 115 Q------TFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQ----SG 163
                     K++  +GK  Q   AS +F ++ LS    P   V+ A++ A+ +    + 
Sbjct: 91  SNRDLEVAHAKIIDTMGKQGQLRLASWIFSQLQLSSRTTP---VFNAIIMAHLRCKNVAR 147

Query: 164 LLDEAFSTINDMK-SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAV 221
            LD A      MK SV  C P + TY++L ++C +    D  E +  E+     ++  A 
Sbjct: 148 ALDSALDHFGHMKTSVHSC-PSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAY 206

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           T+N I+D Y K   + +ME     M E G   PD+ T N +I AYG +G+  KME+ Y  
Sbjct: 207 TFNGIMDAYAKKGLYRDMEYKLKEMSEHG-VRPDLVTFNVLIDAYGRAGDFVKMERTYKS 265

Query: 282 F-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
             NL G K    T N +  SYG++    KM  V+  M      P + T+N ++ ++G+AG
Sbjct: 266 LVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAG 325

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            ++ M + F KM    +KP   T   L+ AY++ GL+ + +++       D+      + 
Sbjct: 326 ELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYL 385

Query: 401 CIISAYGQAGDVEKMGELFLTMKE 424
            +  AYG+   ++KM  L   M++
Sbjct: 386 ILFKAYGEERQLDKMTVLMSKMEQ 409


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 170/355 (47%), Gaps = 3/355 (0%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
            KKW L + +   +  +  ++     +  L+   GK +Q  +A  ++  +L     P+ D
Sbjct: 295 NKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTED 354

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L+ AY  +G L  A   I++M+      P+   Y+  +    K    +   ++   
Sbjct: 355 TYALLLRAYCNAGSLHRAEGVISEMRE-HGIPPNATVYNAYLDGLLKARCTEKAVEVYQR 413

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M       +  T+  +I+ YGKAK+       F+ M +S GC P+I T  ++++A+   G
Sbjct: 414 MKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAFAREG 472

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             EK E+ + E    G + D+   N L ++Y RAG+      +   MQ     P   +YN
Sbjct: 473 LCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYN 532

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I+++ +G+AG  E  E  F+++K RGM P   ++  L++A++++G   + + ++ Q+  S
Sbjct: 533 ILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKS 592

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            +  DT   N +++AY +AG ++ M  L   M ER    D  T+   + AY   G
Sbjct: 593 GLTPDTFALNAMLNAYARAGRLDDMERLLAAM-ERRGDADVGTYNVAVNAYGRAG 646



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 183/341 (53%), Gaps = 4/341 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +  + A++++  +++++  +A  +TFT ++ + GK KQP  +  +F  M S G
Sbjct: 395 LDGLLKARCTEKAVEVYQRMKRER-CRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG 453

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++       
Sbjct: 454 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGA 512

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+A   E+ E+ F  + + G   P + +   +++
Sbjct: 513 SEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRG-MSPTMKSHMLLLA 571

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+  SGN  + E+   + +  G+  D   LN +  +Y RAG  D M  ++  M++R    
Sbjct: 572 AHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRGD-A 630

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V TYN+ +  +G+AG++ +ME  F  +  RG+  + +T+ + + AY++     +   ++
Sbjct: 631 DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMV 690

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            ++ ++    D      +++A      VE++  +  +M ++
Sbjct: 691 EEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKK 731



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 151/324 (46%), Gaps = 5/324 (1%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++     +P +  Y  L+ +YG+   L++A S    +   + C P   TY++L+++    
Sbjct: 308 ILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLE-AQCVPTEDTYALLLRAYCNA 366

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
                 E +++EM   GI  +A  YN  +DG  KA+  E+    +  M +   C  +  T
Sbjct: 367 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRM-KRERCRANTET 425

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
              MI+ YG +       K +NE   +G K +I T   L  ++ R G+ +K   V + MQ
Sbjct: 426 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 485

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 486 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHE 545

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             +++  +++   +         +++A+ ++G+  +  E+   + +    PD      M+
Sbjct: 546 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 605

Query: 439 QAYNALGMTEAAQNLENKMIAMKE 462
            AY   G  +   ++E  + AM+ 
Sbjct: 606 NAYARAGRLD---DMERLLAAMER 626



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 148/317 (46%), Gaps = 3/317 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K +  E+A  +++ M  +  + + + +T +++ YG++     +    N+MKS+  CKP
Sbjct: 398 LLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKP 456

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 457 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 516

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M +  GC PD  + N ++ AYG +G  E  E  + E    G+   +++  +L  ++ R
Sbjct: 517 SLM-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 575

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G   +   VM  + K    P     N ++  + +AG ++ ME     M+ RG   +  T
Sbjct: 576 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRG-DADVGT 634

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y   V+AY +AG + ++++    V    +  D   +   + AY +  +  +   +   M 
Sbjct: 635 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 694

Query: 424 ERHCVPDNITFATMIQA 440
           +  C PD  T   ++ A
Sbjct: 695 DAGCYPDAGTARVLLAA 711


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 171/353 (48%), Gaps = 2/353 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q ++      +F+ L+ +  +  + + A      M   GL P   +YT ++  + ++G +
Sbjct: 289 QHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA    ++M     C PDV TY+ L+    K HR    EK+L EM   G+     T+ T
Sbjct: 349 SEALRVRDEMVGFG-CLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I GY +   FE     F  ++      PD+ T NS+I      G++ K  + +++ +  
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQR-LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR 466

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            +  +  T +IL  S+   G  +     +D M K+   P + TYN +I+ + ++G+++K 
Sbjct: 467 EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKG 526

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +++ +KM+   + P+ IT+ +L+  Y K   +    ++   +E   V  D   +N II+ 
Sbjct: 527 QQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIING 586

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + + G+++  G +F  M +    PD  T+ ++I  +   G ++ A  L ++MI
Sbjct: 587 FSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMI 639



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 150/326 (46%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K ++ ++A  +F  M    + P V  +  L+  + + G + EA     +M
Sbjct: 229 TYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEM 288

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PDV ++S LI   ++    D     L EM  LG+    V Y  +I G+ +A  
Sbjct: 289 QH-RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E       MV   GC PD+ T N++++       +   EK  NE    GV  D+ T  
Sbjct: 348 MSEALRVRDEMV-GFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFT 406

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y R G ++    + D + ++   P VVTYN +I+   + G + K  E +  M  R
Sbjct: 407 TLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR 466

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + PN ITY  L+ ++ + G +      L ++     + +   +N II  Y ++G+V+K 
Sbjct: 467 EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKG 526

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            +    M++ +  PD ITF T+I  Y
Sbjct: 527 QQFLQKMRQDNVFPDLITFNTLIHGY 552



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 173/386 (44%), Gaps = 7/386 (1%)

Query: 78  PKPVLEALDEAIK----QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA 133
           P P  +  D  I+     +K + A + F LL   +           L+ +L +   P  A
Sbjct: 83  PTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHR-VPVPASASNALLAVLSRAGWPHLA 141

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
              + ++LS   + +      +V +Y ++   D A + I++M+      PDV T+++LI 
Sbjct: 142 QEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRC-VFPDVVTHNVLID 200

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
           +  +    D    ++  M+  G++   VTYN+++ G  K ++F++ +  F  M +     
Sbjct: 201 ARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTM-DQCSVA 259

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD+ + N +I  +   G +++  K+Y E     V  D+ + + L   + R G  D   + 
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +  M+     P  V Y +VI  F +AG + +      +M   G  P+ +TY +L++   K
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCK 379

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
              ++  + +L ++E   V  D   F  +I  Y + G+ E   +LF T+  +   PD +T
Sbjct: 380 QHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVT 439

Query: 434 FATMIQAYNALGMTEAAQNLENKMIA 459
           + ++I      G    A  L + M A
Sbjct: 440 YNSLIDGMCRKGDLAKANELWDDMHA 465



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 157/350 (44%), Gaps = 8/350 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFST 171
           Q F  L+    + ++P +A   F ++L   +        AL++   ++G   L  EA+  
Sbjct: 88  QVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRL 147

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +      SD + + YT +I++ S  K   FD  + +++EM    +    VT+N +ID   
Sbjct: 148 VLS----SDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +A   +   +   +M   G   P I T NS++         +K ++ +   +   V  D+
Sbjct: 204 RAGDVDAAIALVDSMANRG-LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDV 262

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           ++ NIL   + R G   +       MQ R+  P VV+++ +I  F + G ++    Y ++
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE 322

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G+ P+ + Y  ++  + +AG + +   +  ++     + D   +N +++   +   
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHR 382

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +    +L   M+ER   PD  TF T+I  Y   G  E A  L + ++  +
Sbjct: 383 LLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQR 432


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 157/319 (49%), Gaps = 3/319 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           A  LF  M+ DG + +V  YT ++  Y  Q   LD A   +  MK  S  KPD   Y+ L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKE-SGKKPDEILYNCL 59

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +       R +  EKIL +M    +  + VTY  +I  Y  A + ++    F  M + G 
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGE 119

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+ +T N++I  YG  G  ++  + Y+E + +G   D+ T NI    YG+ G+ + M 
Sbjct: 120 -SPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDME 178

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++D M  +   P  VTYN +++ + K  +  K  E  ++M   G +PN  TY  ++S+ 
Sbjct: 179 RLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSA 238

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   +++  V+ +   ++ ++S YG+ G   +  +L+  M E  C+P  
Sbjct: 239 RKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCI 298

Query: 432 ITFATMIQAYNALGMTEAA 450
           I ++ +I++Y   GM + A
Sbjct: 299 IAYSGLIESYGHHGMYQEA 317



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  L EVM   G KP   +Y  LV+    SG L+ A   ++DMK       ++ TY+ 
Sbjct: 35  DHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQ-DKVSANLVTYTN 93

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LIK      R     K+  EM   G   ++ TYN +I GYG+   F+E    +  M +  
Sbjct: 94  LIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM-DGV 152

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC  D+ T N  I+ YG  G +E ME+  +E +  GV  D  T N L   Y +   + K 
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKA 212

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M +  + P + TYNI++ +  K   + +  + F+ +K +G+ PN +TY +++S 
Sbjct: 213 HEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL 272

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y + GL  +   +  ++  +  I     ++ +I +YG  G  ++    F  M++   VPD
Sbjct: 273 YGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPD 332

Query: 431 NITFATMIQAYNALGMTEAAQNL 453
              +  ++ AY   G    A+ L
Sbjct: 333 TKIYTALMDAYGKAGRCREAELL 355



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 155/322 (48%), Gaps = 3/322 (0%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +   + + A KI   ++Q +   A   T+T L+       + +    LF+ M   G  P+
Sbjct: 64  VNSGRLEAAEKILDDMKQDK-VSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPN 122

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              Y AL+  YG+ GL  EA    ++M  V  C  DV+TY+I I    K    + +E++L
Sbjct: 123 SWTYNALIQGYGRKGLFKEALELYDEMDGVG-CAKDVHTYNIAIAMYGKRGLLEDMERLL 181

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM   G+    VTYNT++D Y K   F +       M E+ G  P+I+T N M+S+   
Sbjct: 182 DEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEA-GYRPNIWTYNIMLSSARK 240

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
             ++ +  + +      GV  +I T + +   YGR G+Y +   + D M +    P ++ 
Sbjct: 241 EQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIA 300

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y+ +IE++G  G  ++    F+ M+  G+ P++  Y +L+ AY KAG   + + +  ++ 
Sbjct: 301 YSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMT 360

Query: 389 NSDVILDTPFFNCIISAYGQAG 410
               + D   +  ++ A+  AG
Sbjct: 361 KEGFVPDGITYGILVRAFANAG 382



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 2/228 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+   + M GK    E    L + M + G+ P    Y  L+  Y +     +A   + +
Sbjct: 159 HTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILRE 218

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M      +P+++TY+I++ S  K        ++   +   G+  + VTY+ ++  YG+  
Sbjct: 219 MTEAG-YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHG 277

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E    +  M+E+G C P I   + +I +YG+ G  ++    + +    G+  D +  
Sbjct: 278 LYTEAAKLWDEMIEAG-CIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIY 336

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
             L  +YG+AG   +   +   M K  F P  +TY I++  F  AG +
Sbjct: 337 TALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G  PSV  Y A++ A   + L   A   ++ M       P+VYTY+IL+++     R + 
Sbjct: 113 GYAPSVPAYNAVLLALSDASL-PSARRFLSSMLR-HGVAPNVYTYNILVRALCARGRLEE 170

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              ++ +M   G   +AVTYNT++  + +A + +  E   S M E G   P++ T NSM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +    +G +E   K ++E    G+  D+ + N L   Y + G   +  +V   M +R   
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT+  +I    KAG++E+      +M+ RG++ N +T+ +L+  + K G +      
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++    +      +N +I+ Y + G ++   EL   M+ +   PD +T++T+I  Y  
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 444 LGMTEAAQNLENKMI 458
           +G  ++A  L  KM+
Sbjct: 411 VGNLDSAFQLNQKML 425



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 165/343 (48%), Gaps = 1/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    + E+A  +   M   G  P+   Y  LV+A+ ++G LD A   ++ M
Sbjct: 154 TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 213

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   + KP++ T++ ++    K  R +   K+  EM   G+    V+YNT++ GY K   
Sbjct: 214 REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGC 273

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  + FS M + G   PD+ T  S+I A   +GN+E+      +    G++ +  T  
Sbjct: 274 LHESLAVFSEMTQRG-LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 332

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  D     ++ M+K    P+VV YN +I  + K G ++   E  ++M+ +
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +KP+ +TY +++S Y K G +     + +++    V+ D   ++ +I    +   +   
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  M +    PD  T+ T+I  +   G  E A +L ++MI
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++  L+R++   +    TF  ++  L K  + E A  +F+ M+ +GL P V  Y  L+
Sbjct: 206 AERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 265

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S Y + G L E+ +  ++M       PDV T++ LI +  K    +    ++A+M   G+
Sbjct: 266 SGYCKVGCLHESLAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + VT+  +IDG+ K    ++   +   M + G   P +   N++I+ Y   G ++   
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG-IQPSVVCYNALINGYCKLGRMDLAR 383

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +   E     VK D+ T + +   Y + G  D    +   M K+   P  +TY+ +I   
Sbjct: 384 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +   +    E F+ M   G++P+  TY +L+  + K G + K  S+  ++    V+ D 
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 503

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             ++ +I+   ++   ++   L   +     VPDNI +  ++
Sbjct: 504 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 17/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+    K    EQA  L   M   GL+ +   +TAL+  + + G LD+A   + +M
Sbjct: 295 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 354

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +P V  Y+ LI    K  R DL  +++ EM    ++   VTY+TII GY K   
Sbjct: 355 RKCG-IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        M++ G   PD  T +S+I        +    + +     +GV+ D  T  
Sbjct: 414 LDSAFQLNQKMLKKG-VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 472

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  +K  S+ D M ++   P VVTY+++I    K+   ++      K+ H 
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE 532

Query: 356 GMKPNSITYCSLVSAYSKA---------------GLIMKVDSILRQVENSDVILDTPFFN 400
              P++I Y +L+   SKA               GL+ + D + + + + +  LD   ++
Sbjct: 533 DPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYS 592

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
            +I  + + G+V K       M      P++ +  ++++     GM   A N
Sbjct: 593 ILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 644



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 153/368 (41%), Gaps = 56/368 (15%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           TFT L+   G CK+   + A L  E M   G++PSV  Y AL++ Y + G +D A   I 
Sbjct: 330 TFTALID--GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M++    KPDV TYS +I    K    D   ++  +M   G+   A+TY+++I G  + 
Sbjct: 388 EMEA-KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 446

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K+  +    F  M++ G   PD FT  ++I  +   GN+EK    ++E    GV  D+ T
Sbjct: 447 KRLNDACELFENMLQLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505

Query: 294 LNILT--------------------------------------------------KSYGR 303
            ++L                                                   K +  
Sbjct: 506 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCM 565

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G+  +   V   M  R +      Y+I+I    + G++ K   + K+M   G  PNS +
Sbjct: 566 KGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
             SLV    + G++++ D+ ++ +     + D      +I    + G+V+ + ++   M 
Sbjct: 626 TISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMA 685

Query: 424 ERHCVPDN 431
               +P +
Sbjct: 686 RDGLLPSS 693


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G  PSV  Y A++ A   + L   A   ++ M       P+VYTY+IL+++     R + 
Sbjct: 113 GYAPSVPAYNAVLLALSDASL-PSARRFLSSMLR-HGVAPNVYTYNILVRALCARGRLEE 170

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              ++ +M   G   +AVTYNT++  + +A + +  E   S M E G   P++ T NSM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +    +G +E   K ++E    G+  D+ + N L   Y + G   +  +V   M +R   
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT+  +I    KAG++E+      +M+ RG++ N +T+ +L+  + K G +      
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++    +      +N +I+ Y + G ++   EL   M+ +   PD +T++T+I  Y  
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 444 LGMTEAAQNLENKMI 458
           +G  ++A  L  KM+
Sbjct: 411 VGNLDSAFQLNQKML 425



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 165/343 (48%), Gaps = 1/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    + E+A  +   M   G  P+   Y  LV+A+ ++G LD A   ++ M
Sbjct: 154 TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 213

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   + KP++ T++ ++    K  R +   K+  EM   G+    V+YNT++ GY K   
Sbjct: 214 REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGC 273

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  + FS M + G   PD+ T  S+I A   +GN+E+      +    G++ +  T  
Sbjct: 274 LHESLAVFSEMTQRG-LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 332

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  D     ++ M+K    P+VV YN +I  + K G ++   E  ++M+ +
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +KP+ +TY +++S Y K G +     + +++    V+ D   ++ +I    +   +   
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  M +    PD  T+ T+I  +   G  E A +L ++MI
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++  L+R++   +    TF  ++  L K  + E A  +F+ M+ +GL P V  Y  L+
Sbjct: 206 AERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 265

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S Y + G L E+ +  ++M       PDV T++ LI +  K    +    ++A+M   G+
Sbjct: 266 SGYCKVGCLHESLAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + VT+  +IDG+ K    ++   +   M + G   P +   N++I+ Y   G ++   
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG-IQPSVVCYNALINGYCKLGRMDLAR 383

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +   E     VK D+ T + +   Y + G  D    +   M K+   P  +TY+ +I   
Sbjct: 384 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +   +    E F+ M   G++P+  TY +L+  + K G + K  S+  ++    V+ D 
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 503

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             ++ +I+   ++   ++   L   +     VPDNI +  ++
Sbjct: 504 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 17/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+    K    EQA  L   M   GL+ +   +TAL+  + + G LD+A   + +M
Sbjct: 295 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 354

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +P V  Y+ LI    K  R DL  +++ EM    ++   VTY+TII GY K   
Sbjct: 355 RKCG-IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        M++ G   PD  T +S+I        +    + +     +GV+ D  T  
Sbjct: 414 LDSAFQLNQKMLKKG-VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 472

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  +K  S+ D M ++   P VVTY+++I    K+   ++      K+ H 
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE 532

Query: 356 GMKPNSITYCSLVSAYSKA---------------GLIMKVDSILRQVENSDVILDTPFFN 400
              P++I Y +L+   SKA               GL+ + D + + + + +  LD   ++
Sbjct: 533 DPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYS 592

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
            +I  + + G+V K       M      P++ +  ++++     GM   A N
Sbjct: 593 ILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 644



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 56/324 (17%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           TFT L+   G CK+   + A L  E M   G++PSV  Y AL++ Y + G +D A   I 
Sbjct: 330 TFTALID--GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M++    KPDV TYS +I    K    D   ++  +M   G+   A+TY+++I G  + 
Sbjct: 388 EMEA-KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 446

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K+  +    F  M++ G   PD FT  ++I  +   GN+EK    ++E    GV  D+ T
Sbjct: 447 KRLNDACELFENMLQLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505

Query: 294 LNILT--------------------------------------------------KSYGR 303
            ++L                                                   K +  
Sbjct: 506 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCM 565

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G+  +   V   M  R +      Y+I+I    + G++ K   + K+M   G  PNS +
Sbjct: 566 KGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625

Query: 364 YCSLVSAYSKAGLIMKVDSILRQV 387
             SLV    + G++++ D+ ++ +
Sbjct: 626 TISLVRGLFEEGMVVEADNAIQDL 649


>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 313

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 154/286 (53%), Gaps = 1/286 (0%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++F   + +  ++   + + K++   G+  QP+ A+ LF+ M   G+K +   Y AL+ +
Sbjct: 1   QVFNWKKSKLRWEVNPKEYAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHS 60

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           YG++    +A      MK   DC+P + TY+ LI   ++    + ++KI  + +      
Sbjct: 61  YGRNNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVP 120

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TYN +I GY +A +  EME +F+ + ++   + D+ T N++I  Y  +  ++KME  
Sbjct: 121 DRHTYNALIWGYMRAGQLNEMEVTFNEL-QAKKFNADVITYNALIIGYARANAVDKMEVV 179

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
            +    +G+  +   L+ L  +Y RAG YD++   M+ ++   +     TYNI+I  +GK
Sbjct: 180 LSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKTMEVVKDAGWMLQPATYNILISEYGK 239

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            G+++KME+ F++M +  +KP+  T+  +++AY  A    +VD IL
Sbjct: 240 VGYLDKMEQAFREMMNASVKPSFETFQYMINAYEAADNETQVDRIL 285



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 129/256 (50%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ +I    + ++  L   +  EM   GI+ +AV+YN +I  YG+  + ++    F  M 
Sbjct: 19  YAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKALQLFEYMK 78

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            +  C P + T N++IS Y   G  E+M+K + +        D  T N L   Y RAG  
Sbjct: 79  VTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQL 138

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           ++M    + +Q + F   V+TYN +I  + +A  ++KME     M+  G+  N++   +L
Sbjct: 139 NEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHAL 198

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           + AYS+AG   ++   +  V+++  +L    +N +IS YG+ G ++KM + F  M     
Sbjct: 199 IMAYSRAGTYDRLAKTMEVVKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMMNASV 258

Query: 428 VPDNITFATMIQAYNA 443
            P   TF  MI AY A
Sbjct: 259 KPSFETFQYMINAYEA 274



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I   G+    +   + F +M+ RG+K  +++Y +L+ +Y +     K    L+  E
Sbjct: 19  YAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKA---LQLFE 75

Query: 389 NSDVILDTP----FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
              V +D       +N +IS Y + G  E+M ++FL   E   VPD  T+  +I  Y   
Sbjct: 76  YMKVTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRA 135

Query: 445 GMTEAAQNLENKMIAMKENS 464
           G     +   N++ A K N+
Sbjct: 136 GQLNEMEVTFNELQAKKFNA 155


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 190/389 (48%), Gaps = 9/389 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP +E  +  I    +  +W+ A  I   + +     +R  TF  L+   G C    +A 
Sbjct: 62  KPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSR-STFNNLINACGSCGNWREAL 120

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY       +A S    MK  ++ +PD  T +I+I  
Sbjct: 121 RVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKG-TNIRPDTTTLNIVIHC 179

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
             K  ++    +I + M     EC    VT+ +II  Y    + E+ ++ FS M+ + G 
Sbjct: 180 LIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTML-AEGI 238

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N++ISAY + G  ++    ++E    G   D+ +   L  ++GR+    + R 
Sbjct: 239 KPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARARE 298

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V D M++    P +V+YN +++ +G  G++ +  +  ++M+  G+ PN ++ C+L++A  
Sbjct: 299 VFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACG 358

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + G  + +DS+L   E   + L+T   N  I +Y   G+ EK   L+ +M+ +   PD++
Sbjct: 359 RFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSV 418

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIAMK 461
           TF  +I     +   E A     +M+ ++
Sbjct: 419 TFTILISGCCRMSKYEEALCFFKEMLDLR 447



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 179/358 (50%), Gaps = 9/358 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           IK K++  A++IF  +R+++   + C+    TFT ++ +     Q E    +F  ML++G
Sbjct: 181 IKVKQYGQAIEIFSSMREKR---SECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEG 237

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +KP++  Y AL+SAY   G+  EAFS  ++MK    C PDV +Y+ LI +  +  +    
Sbjct: 238 IKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC-PDVVSYTSLISTFGRSQQPARA 296

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M     + + V+YN ++D YG      +       M E  G HP++ ++ ++++
Sbjct: 297 REVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM-EQDGIHPNVVSICTLLA 355

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A G  G    ++   +   L G+  +    N    SY   G Y+K  ++   M+ +   P
Sbjct: 356 ACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKP 415

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VT+ I+I    +    E+   +FK+M    +  +S  Y S++ AYSK G ++K +S+ 
Sbjct: 416 DSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLF 475

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             ++ S    D   +  +I+AY  +   EK+  L+  M+  +   D+I  + +++A+N
Sbjct: 476 NSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFN 533



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 133/307 (43%), Gaps = 38/307 (12%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+++I+   + +R D    +  EM     +    TYN +I+ +G+A ++    +    M+
Sbjct: 33  YNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDML 92

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            +    P   T N++I+A G+ GN  +  +   +    GV  D+ T NI+  +Y     Y
Sbjct: 93  RAA-IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQY 151

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIET------FGKA---------------------- 339
            K  S  + M+     P   T NIVI        +G+A                      
Sbjct: 152 SKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFT 211

Query: 340 ---------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
                    G IE  +  F  M   G+KPN ++Y +L+SAY+  G+  +  S+  +++ S
Sbjct: 212 SIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRS 271

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               D   +  +IS +G++    +  E+F  MK   C P+ +++  ++ AY + G    A
Sbjct: 272 GFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQA 331

Query: 451 QNLENKM 457
            ++  +M
Sbjct: 332 VDILREM 338



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 145/339 (42%), Gaps = 37/339 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T L+   G+ +QP +A  +F++M  +  KP++  Y AL+ AYG +G L +A   + +M
Sbjct: 279 SYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 338

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P+V +   L+ +C +F +   I+ +L+     GI  + +  N+ I  Y    +
Sbjct: 339 EQ-DGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE 397

Query: 236 FEEMESSFSAMVESGGCHPDIFTL-----------------------------------N 260
           +E+  + + +M E+    PD  T                                    +
Sbjct: 398 YEKAINLYRSM-ENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYS 456

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           SMI AY   G + K E  +N     G   D+ T   +  +Y  + M++K+ ++   M+  
Sbjct: 457 SMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 516

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                 +  + +++ F K      +    + MK +G+  N   +  ++SA S      K 
Sbjct: 517 NIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKA 576

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
             ++  +E S  ++     N ++   G++G  E M +LF
Sbjct: 577 TDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLF 615



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     I++    + E      K D++T N L  ++GRAG +    ++M
Sbjct: 31  DIY--NMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIM 88

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M +    P+  T+N +I   G  G+  +     KKM   G+ P+ +T+  ++SAY   
Sbjct: 89  EDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSG 148

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  S    ++ +++  DT   N +I    +     +  E+F +M+E+   C PD +
Sbjct: 149 AQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVV 208

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF ++I  Y+  G  E  + + + M+A
Sbjct: 209 TFTSIIHLYSVRGQIEDCKAVFSTMLA 235



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 154/398 (38%), Gaps = 74/398 (18%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFST- 171
           ++  LM   G      QA  +   M  DG+ P+V     L++A   +GQ   +D   S  
Sbjct: 314 SYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAA 373

Query: 172 ----------------------------INDMKSVSD--CKPDVYTYSILIKSCTKFHRF 201
                                       IN  +S+ +   KPD  T++ILI  C +  ++
Sbjct: 374 ELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKY 433

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +       EM  L I  S+  Y+++I  Y K  +  + ES F+++ +  GC PD+ T  +
Sbjct: 434 EEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSL-KGSGCCPDLVTYTA 492

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM--------------- 306
           MI+AY  S   EK+   Y E     ++ D    + L K++ +                  
Sbjct: 493 MINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKG 552

Query: 307 --------------------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
                               + K   +++ M+  F   ++ T N +++  GK+G  E M 
Sbjct: 553 IPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMI 612

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           + F +    G   N  TY  L+     AG   K   +L+ + ++ +      +N I+   
Sbjct: 613 KLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFA 672

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
              GD E        +KER  +   I+  +++ A N L
Sbjct: 673 QHCGDAEYAA----VIKERVGMRLCISLISVVLARNNL 706


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 163/343 (47%), Gaps = 6/343 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F  + Q      +  T   +++ LG   +  +A  LFE +  +GL+P    Y AL+  Y 
Sbjct: 263 FLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYV 322

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L +A   +++M+  +  KPD  TYS+LI       R++    +L EM    ++ ++
Sbjct: 323 RTGSLKDAEFVVSEMEK-AGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNS 381

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             ++ I+  Y   +   E + SF  +  ++S G  PD    N MI  +G    ++     
Sbjct: 382 YVFSRILANY---RDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMAT 438

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +      G+  DI T N L   + ++G +D    +   MQ+R + P + TYNI+I + G+
Sbjct: 439 FERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGE 498

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               E++  +  KM+ +G++PNSITY +LV  Y K+G        L  ++++     +  
Sbjct: 499 QQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTM 558

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +N +I+AY Q G  E     F  M      P  +   ++I A+
Sbjct: 559 YNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAF 601



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 9/343 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +  +   L      Y AL+ A  ++G +++A + ++ M+
Sbjct: 142 YSILINALGRSEKLYEAFLLSQRQVLTPL-----TYNALIGACARNGDVEKALNLMSKMR 196

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                +PD   YS +I+  T+ ++ D  +++K+ AE+    IE      N II G+ KA 
Sbjct: 197 R-DGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAG 255

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                   F AM +S G +P   TL ++I A GNSG   + E  + E    G++   +  
Sbjct: 256 D-PTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAY 314

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y R G       V+  M+K    P   TY+++I+ +  AG  E      K+M+ 
Sbjct: 315 NALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEA 374

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++PNS  +  +++ Y   G   K   +L+ +++S V  D  F+N +I  +G+   ++ 
Sbjct: 375 SNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDH 434

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               F  M      PD +T+ T+I  +   G  + A+ L ++M
Sbjct: 435 AMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEM 477



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 151/333 (45%), Gaps = 2/333 (0%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++V   K   P +A     +  S+GL P      A++ A G SG   EA +   +++  +
Sbjct: 247 IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRE-N 305

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             +P    Y+ L+K   +       E +++EM   G++    TY+ +ID Y  A ++E  
Sbjct: 306 GLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESA 365

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                 M E+    P+ +  + +++ Y + G  +K  +   +    GV+ D    N++  
Sbjct: 366 RIVLKEM-EASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMID 424

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           ++G+    D   +  + M      P +VT+N +I+   K+G  +  EE F +M+ RG  P
Sbjct: 425 TFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSP 484

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
              TY  ++++  +     +V + L ++++  +  ++  +  ++  YG++G      E  
Sbjct: 485 CITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECL 544

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             +K     P +  +  +I AY   G++E A N
Sbjct: 545 EVLKSTGFKPTSTMYNALINAYAQRGLSELAVN 577



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 163/337 (48%), Gaps = 10/337 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT++ L+ +     + E A ++ + M +  ++P+  V++ +++ Y   G   ++F  + D
Sbjct: 347 QTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKD 406

Query: 175 MKSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           MKS S  +PD + Y+++I +  K+    H     E++L+E    GI    VT+NT+ID +
Sbjct: 407 MKS-SGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSE----GIPPDIVTWNTLIDCH 461

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K+ + +  E  FS M +  G  P I T N MI++ G     E++  + ++    G++ +
Sbjct: 462 CKSGRHDMAEELFSEM-QQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPN 520

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   L   YG++G +      ++ ++   F PT   YN +I  + + G  E     F+
Sbjct: 521 SITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFR 580

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M   G+ P+ +   SL++A+ +     +  ++L+ ++ +++  D   +  ++ A  +  
Sbjct: 581 LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVE 640

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             +K+  ++  M    C PD    A +  A   +  T
Sbjct: 641 KFQKVPAVYEEMVASGCTPDRKARAMLRSALRYMKQT 677


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 189/417 (45%), Gaps = 24/417 (5%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVL-EALDEAI-KQKKWQLALKIFGLLRQQQ 108
           LSK  R   A++  +    S + + L P  V+  AL   + K +K   AL++       Q
Sbjct: 136 LSKAGRIGAAVRIFK----SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA-----Q 186

Query: 109 WYQARC--QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
             +A C   T T  +++ G CK    E A   F+ ML  G KP V  Y  L+S + ++G 
Sbjct: 187 MKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 246

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSA 220
            D A  ++    +++ C  D++TY+ ++    K  + +    L+EKI A     G   + 
Sbjct: 247 TDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITAN----GCTPTI 302

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
            TYN +++G  K  + EE       +V++G C PD+ T  S+I   G      +  K + 
Sbjct: 303 ATYNALLNGLCKMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKLFK 361

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E  L G+  D      L +   + G   +  SV   M      P VVT + +I+   KAG
Sbjct: 362 EMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG 421

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            I      FK M+ RG+ PN + Y +L+    KA  +     +L Q++ +    DT  +N
Sbjct: 422 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYN 481

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I    ++GDVE     F  M E  C PD  T+  +I  +   G T+AA  + + M
Sbjct: 482 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 162/380 (42%), Gaps = 38/380 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK K+  +A  LF+ M   GL      YTAL+    Q+G + +A S    M
Sbjct: 58  TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 117

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV T S +I   +K  R     +I   M   G+  + V Y+ +I G  KA+K
Sbjct: 118 TS-HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 176

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +      + M +   C PD  T N +I     SG++E    +++E    G K D+ T N
Sbjct: 177 MDCALEMLAQM-KKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 235

Query: 296 ILTKSYGRAGMYD---------------------------------KMRSVMDFMQK--- 319
           IL   + +AG  D                                 K+   +  M+K   
Sbjct: 236 ILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITA 295

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K     +
Sbjct: 296 NGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 355

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              + +++    + LDT  +  +I    Q G + +   ++ TM    CVPD +T +TMI 
Sbjct: 356 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 415

Query: 440 AYNALGMTEAAQNLENKMIA 459
             +  G   AA  +   M A
Sbjct: 416 GLSKAGRIGAAVRIFKSMEA 435



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 145/313 (46%), Gaps = 6/313 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T ++  L K K+ E+A  L E + ++G  P++  Y AL++   + G L+EA   I+ 
Sbjct: 268 HTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDL 324

Query: 175 MKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++ + D  C PDV TY+ LI    K  R     K+  EM+  G+    V Y  +I    +
Sbjct: 325 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQ 384

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             K  +  S +  M  S GC PD+ TL++MI     +G I    + +      G+  +  
Sbjct: 385 TGKIPQASSVYKTMT-SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 443

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             + L     +A   D    ++  M+K F  P  +TYNI+I+   K+G +E    +F +M
Sbjct: 444 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 503

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G KP+  TY  L+S + KAG       +   + +S    +   +  +IS   +   +
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQL 563

Query: 413 EKMGELFLTMKER 425
            K    F  MKER
Sbjct: 564 TKASLYFQHMKER 576



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 150/331 (45%), Gaps = 7/331 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTY 188
           E+A  L E + ++G  P++  Y AL++   + G L+EA   I+ ++ + D  C PDV TY
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDLLRKIVDNGCTPDVVTY 59

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + LI    K  R     K+  EM+  G+    V Y  +I    +  K  +  S +  M  
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT- 118

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S GC PD+ TL++MI     +G I    + +      G+  +    + L     +A   D
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
               ++  M+K F  P  +TYN++I+   K+G +E    +F +M   G KP+  TY  L+
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 238

Query: 369 SAYSKAGLIMKVD-SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           S + KAG       S+ ++   +   +D   +  I+    +   +E+   L   +    C
Sbjct: 239 SGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            P   T+  ++     +G  E A +L  K++
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIV 329



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 111/241 (46%), Gaps = 2/241 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK K+  +A  LF+ M   GL      YTAL+    Q+G + +A S    M
Sbjct: 339 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 398

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV T S +I   +K  R     +I   M   G+  + V Y+ +I G  KA+K
Sbjct: 399 TS-HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 457

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +      + M +   C PD  T N +I     SG++E    +++E    G K D+ T N
Sbjct: 458 MDCALEMLAQM-KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 516

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   + +AG  D    V D M        VVTY  +I    K   + K   YF+ MK R
Sbjct: 517 ILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKER 576

Query: 356 G 356
           G
Sbjct: 577 G 577



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K     +   +
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            +++    + LDT  +  +I    Q G + +   ++ TM    CVPD +T +TMI   + 
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 444 LGMTEAAQNLENKMIA 459
            G   AA  +   M A
Sbjct: 139 AGRIGAAVRIFKSMEA 154



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVT 328
           IE+      +    G    I T N L     + G   ++   +D ++K       P VVT
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMG---RLEEAIDLLRKIVDNGCTPDVVT 58

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I+  GK     +  + FK+M  RG+  +++ Y +L+    + G I +  S+ + + 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 118

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +   + D    + +I    +AG +     +F +M+ R   P+ + ++ +I  
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 170


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 189/377 (50%), Gaps = 30/377 (7%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW   + +   + ++  +Q     F  L+   G+  + ++A  L+  +L     P+ D 
Sbjct: 146 KKWDSIILVCEWILRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDT 205

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK---IL 208
           YT L+ AY  +GL+++A + + +M++     P V  Y+  I+   K  R    E+   + 
Sbjct: 206 YTLLIKAYCMAGLIEKAEAVLIEMQN-HHVSPSVTVYNAYIEGLMK--RKGNTEQAIDVF 262

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M     + +  TYN +I+ YGKA K       F  M  S  C P+I T  ++++A+  
Sbjct: 263 QRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEM-RSHQCKPNICTYTALVNAFAR 321

Query: 269 SGNIEKMEKWYNE--------------------FNLM---GVKADIQTLNILTKSYGRAG 305
            G  EK E+ + +                    F+LM   G + D  + NI+  +YGRAG
Sbjct: 322 EGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAG 381

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           ++    +V + M++    PT+ ++ +++  + +A  + K E   K+M   G++P++    
Sbjct: 382 LHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLN 441

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           S+++ Y + G   K++ IL ++EN     D   +N +I+ YG+AG +E++ ELF+ +KER
Sbjct: 442 SMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKER 501

Query: 426 HCVPDNITFATMIQAYN 442
           +  PD +T+ + I AY+
Sbjct: 502 NFKPDVVTWTSRIGAYS 518



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 154/318 (48%), Gaps = 31/318 (9%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           EQA  +F+ M  D  KP+ + Y  +++ YG++     ++    +M+S   CKP++ TY+ 
Sbjct: 256 EQAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRS-HQCKPNICTYTA 314

Query: 191 LIKSCTKFHRFDLIEK--------------------------ILAEMSYLGIECSAVTYN 224
           L+ +   F R  L EK                          I + M ++G E    +YN
Sbjct: 315 LVNA---FAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYN 371

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            ++D YG+A    + E+ F  M +  G  P + +   ++SAY  + ++ K E    E + 
Sbjct: 372 IMVDAYGRAGLHSDAEAVFEEM-KRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSE 430

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            GV+ D   LN +   YGR G + KM  ++  M+       + TYNI+I  +GKAG +E+
Sbjct: 431 NGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLER 490

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
           +EE F ++K R  KP+ +T+ S + AYS+  L +K   I  ++ +S    D      ++S
Sbjct: 491 IEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLS 550

Query: 405 AYGQAGDVEKMGELFLTM 422
           A      VE++  +  TM
Sbjct: 551 ACSSEDQVEQVTSVLRTM 568



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 3/231 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A +IF L++       R  ++  ++   G+      A  +FE M   G+ P++  +  L+
Sbjct: 351 AAEIFSLMQHMGCEPDRA-SYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLL 409

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           SAY ++  + +  + + +M S +  +PD +  + ++    +  +F  +EKILAEM     
Sbjct: 410 SAYSRARDVTKCEAIVKEM-SENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPC 468

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN +I+ YGKA   E +E  F  + E     PD+ T  S I AY       K  
Sbjct: 469 TADISTYNILINIYGKAGFLERIEELFVELKERN-FKPDVVTWTSRIGAYSRKKLYVKCL 527

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           + + E    G   D  T  +L  +       +++ SV+  M K     ++V
Sbjct: 528 EIFEEMIDSGCAPDGGTAKVLLSACSSEDQVEQVTSVLRTMHKGVSVSSLV 578



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           +I+  + ILR+   S    D   FN +I AYGQ    ++   L++ + E  CVP   T+ 
Sbjct: 151 IILVCEWILRR---SSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYT 207

Query: 436 TMIQAYNALGMTEAAQ 451
            +I+AY   G+ E A+
Sbjct: 208 LLIKAYCMAGLIEKAE 223



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           A   T+  L+ + GK    E+   LF  +     KP V  +T+ + AY +  L  +    
Sbjct: 470 ADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEI 529

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
             +M   S C PD  T  +L+ +C+   + + +  +L  M + G+  S++  N
Sbjct: 530 FEEMID-SGCAPDGGTAKVLLSACSSEDQVEQVTSVLRTM-HKGVSVSSLVPN 580


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 179/396 (45%), Gaps = 40/396 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L I   + +   Y      +  ++  + + KQ + A  LF+ ML  GL P  
Sbjct: 136 REPDWQRSLAILDWMNEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDK 195

Query: 150 DVYTALVSAYGQSGLLDEAF-----------------------------------STIND 174
             Y+ L++ + + GL D +F                                   S  N 
Sbjct: 196 YTYSTLITHFSKQGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNA 255

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K   +  PD+   +++I    K   F     +L EM   G+  S  +Y+T++  Y   +
Sbjct: 256 LKGSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQ 315

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           KF E  S FS M E   C  D+ T N MI  YG    I++ + ++     MG++ ++ + 
Sbjct: 316 KFVEAVSLFSEMNEVE-CPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSY 374

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N + + YG AG++ +   +   MQ +     VVTYN +I  +GK+   +K     ++M+ 
Sbjct: 375 NTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQS 434

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG++PN+ITY +++S + KAG + +   +  ++  S V +D   +  +I AY +AG V  
Sbjct: 435 RGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAH 494

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              L   +K+    PDN++  T I      G  + A
Sbjct: 495 AKRLLNELKQ----PDNVSRETAITILARAGKVDEA 526



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 22/320 (6%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+ +  ++A   F  M   G++P+V  Y  ++  YG++GL  EA    + M+ +     +
Sbjct: 347 GQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQ-MKGVPQN 405

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +I    K    D    ++ EM   GI+ +A+TY+TII  + KA K +     F 
Sbjct: 406 VVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFH 465

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            +  + G   D     +MI AY  +G +   ++  NE       +    + IL     RA
Sbjct: 466 KL-RTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSRETAITIL----ARA 520

Query: 305 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           G  D+     R   D  + +     +  +  +I+ F +      + E F+KM+  G  P+
Sbjct: 521 GKVDEAMWVFRQAFDAGEVK----DISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPD 576

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 419
           S     +++A+ K     + D++ +Q+     +        ++  YG   D   +  LF 
Sbjct: 577 SNVIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQMLGLYGARMDFNMVESLFE 636

Query: 420 -------LTMKERHCVPDNI 432
                  +  KE H V  NI
Sbjct: 637 KLDSHPNINKKELHFVVANI 656


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 166/377 (44%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  +++ L     P  A  L   ML DG+ P+V  Y  LV A    G  +EA   + D 
Sbjct: 122 AYNAVLLALSDASLP-SARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDD 180

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C P+V TY+ L+ +  +    D  E+++  M   G+  S VT+NT+++G  KA +
Sbjct: 181 MRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGR 240

Query: 236 FEEMESSFSAMVESG------------------GC-H---------------PDIFTLNS 261
            E+    F  M   G                  GC H               PD+ T  S
Sbjct: 241 MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTS 300

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I A   +GN+E+      +    G++ +  T   L   + R G  D     M  M++  
Sbjct: 301 LIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECR 360

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P+VV YN++I  + K G +++  E   +M+ +GMKP+ +TY +++S Y K G      
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + R++    V+ D   ++ +I    +   +    ELF  M +    PD  T+ T+I  +
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 442 NALGMTEAAQNLENKMI 458
              G  + A +L ++MI
Sbjct: 481 CKEGNVQKALSLHDEMI 497



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 202
           G  PS+  Y A++ A   + L   A   +  M       P+VYTY+IL+++ C +  R +
Sbjct: 115 GYAPSLLAYNAVLLALSDASL-PSARRLLASMLR-DGVAPNVYTYNILVRALCARGQREE 172

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            +  +  +M   G   + VTYNT++  + +A + +  E     M E GG  P + T N++
Sbjct: 173 ALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMRE-GGVRPSLVTFNTV 231

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++    +G +E   K ++E    G+  D  + N L   Y +AG   +  +V   M ++  
Sbjct: 232 VNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVT+  +I    +AG++E+      +M+ RG++ N  T+ +L+  + + G +     
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            ++++    +      +N +I+ Y + G +++  EL   M+ +   PD +T++T++  Y 
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 443 ALGMTEAAQNLENKMI 458
            +G T++A  L  KM+
Sbjct: 412 KIGDTDSAFELNRKML 427



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 158/345 (45%), Gaps = 7/345 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++ G++R+    +    TF  ++  L K  + E A  +F+ M  +GL P    Y  LV
Sbjct: 209 AERLVGVMREG-GVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLV 267

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S Y ++G L EA +   +M       PDV T++ LI +  +    +    ++ +M   G+
Sbjct: 268 SGYCKAGCLHEALAVFAEMAQ-KGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGL 326

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNIEK 274
             +  T+  +IDG+ +   F  ++ +  AM E   C   P +   N +I+ Y   G +++
Sbjct: 327 RMNEFTFTALIDGFCR-NGF--LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDE 383

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             +  +E    G+K D+ T + +   Y + G  D    +   M K+   P  +TY+ +I 
Sbjct: 384 ARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIR 443

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              +   +    E F+KM   G++P+  TY +L+  + K G + K  S+  ++    V+ 
Sbjct: 444 GLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLP 503

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           D   ++ +I    ++   ++   L   +     VPDNI +  ++ 
Sbjct: 504 DVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMH 548



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 124/258 (48%), Gaps = 6/258 (2%)

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++LA M   G+  +  TYN ++       + EE        +   GC P++ T N++++
Sbjct: 139 RRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVA 198

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+  +G ++  E+        GV+  + T N +     +AG  +  R + D M +    P
Sbjct: 199 AFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTP 258

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V+YN ++  + KAG + +    F +M  +G+ P+ +T+ SL+ A  +AG + +  +++
Sbjct: 259 DGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALV 318

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RHCV--PDNITFATMIQAY 441
            Q+    + ++   F  +I  + + G ++   +  L MKE R C   P  + +  +I  Y
Sbjct: 319 GQMRERGLRMNEFTFTALIDGFCRNGFLD---DALLAMKEMRECRIQPSVVCYNVLINGY 375

Query: 442 NALGMTEAAQNLENKMIA 459
             LG  + A+ L ++M A
Sbjct: 376 CKLGRMDEARELIHEMEA 393



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 151/359 (42%), Gaps = 57/359 (15%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKP 147
           +    + A+ + G +R++     R   FT   ++ G C+    + A L  + M    ++P
Sbjct: 307 RAGNLERAVALVGQMRERGL---RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           SV  Y  L++ Y + G +DEA   I++M++    KPDV TYS ++    K    D   ++
Sbjct: 364 SVVCYNVLINGYCKLGRMDEARELIHEMEA-KGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             +M   G+   A+TY+++I G  + ++  +    F  M++ G   PD FT  ++I  + 
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG-LQPDEFTYTTLIDGHC 481

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILT----------------------------- 298
             GN++K    ++E    GV  D+ T ++L                              
Sbjct: 482 KEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNI 541

Query: 299 ---------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
                                K +   G+ ++   V   M  R +      Y+++I    
Sbjct: 542 KYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHC 601

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           + G+I K   + K++   G  PNS +  SLV    + G+ ++ D++++++ N   + D 
Sbjct: 602 RGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADA 660


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 186/398 (46%), Gaps = 42/398 (10%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F L+R+ +    R +  + ++  LG+  + E A  +FE  LS+G   +V  ++AL+SAYG
Sbjct: 175 FALVREGR-KNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYG 233

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECS 219
           +SG  DEA      MK VS  KP++ TY+ +I +C K    F  + +I  EM   G++  
Sbjct: 234 KSGYFDEAIKVFESMK-VSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPD 292

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA-------------- 265
            +TYN+++    +   +E   + F+ M++ G    D+FT N+++ A              
Sbjct: 293 RITYNSLLAVCSRGGLWEAARNLFNEMIDRG-IDQDVFTYNTLLDAVCKGGQMDLAYEIM 351

Query: 266 ---------------------YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
                                Y  +G +E     YNE   +G+  D  + N L   Y + 
Sbjct: 352 LEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKL 411

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G ++    V   M        VVTYN +++ +GK G   ++   FK+MK   + PN +TY
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+  YSK  L  +   + R+ + + +  D   ++ +I+A  + G V+    L   M +
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTK 531

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
               P+ +T+ ++I A+   G +  A+ L + + A  E
Sbjct: 532 EGIRPNVVTYNSIIDAF---GRSTTAEFLVDGVGASNE 566


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 186/398 (46%), Gaps = 42/398 (10%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F L+R+ +    R +  + ++  LG+  + E A  +FE  LS+G   +V  ++AL+SAYG
Sbjct: 175 FALVREGR-KNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYG 233

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECS 219
           +SG  DEA      MK VS  KP++ TY+ +I +C K    F  + +I  EM   G++  
Sbjct: 234 KSGYFDEAIKVFESMK-VSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPD 292

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA-------------- 265
            +TYN+++    +   +E   + F+ M++ G    D+FT N+++ A              
Sbjct: 293 RITYNSLLAVCSRGGLWEAARNLFNEMIDRG-IDQDVFTYNTLLDAVCKGGQMDLAYEIM 351

Query: 266 ---------------------YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
                                Y  +G +E     YNE   +G+  D  + N L   Y + 
Sbjct: 352 LEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKL 411

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G ++    V   M        VVTYN +++ +GK G   ++   FK+MK   + PN +TY
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+  YSK  L  +   + R+ + + +  D   ++ +I+A  + G V+    L   M +
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTK 531

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
               P+ +T+ ++I A+   G +  A+ L + + A  E
Sbjct: 532 EGIRPNVVTYNSIIDAF---GRSTTAEFLVDGVGASNE 566


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 1/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    +QA+ + E M + G +P +  Y  L +   Q+G +DEAF   ++M
Sbjct: 282 TYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEM 341

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +S   PDV TY+ L+ +C K+ R      +L EM   G++ S VT+N ++ G  +  +
Sbjct: 342 EHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQ 401

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE       M E G   PD+ T N++I AY  + N+ K     +E    G+K D  TLN
Sbjct: 402 LEEALGRLKMMTEEG-LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLN 460

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  +   Y++   ++    +R F P  V+Y  V+  + K    E     + +M  R
Sbjct: 461 TLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKR 520

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+  TY +L+      G + +    L ++    ++ D   +N II AY + GD+EK 
Sbjct: 521 KLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKA 580

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +    M E +  PD +T  T++      G  E A  L
Sbjct: 581 FQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKL 618



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 175/366 (47%), Gaps = 5/366 (1%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE-QASL-LFEVMLSDGLKPSVDVY 152
            LA ++    R++   +   Q    ++  L +      QASL +F  +++  L P+   +
Sbjct: 154 HLAAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTF 213

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             LV  +   G L +A ST++ M+      PDV TY+ L+K+  +         +LA M 
Sbjct: 214 NLLVHTHCSKGTLADALSTLSTMQGFG-LSPDVVTYNTLLKAHCRKGMLGEARTLLARMK 272

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             GI  +  TYNT++  Y +    ++  +   AM  + G  PD++T N + +    +G +
Sbjct: 273 KEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMT-AFGFEPDLWTYNVLAAGLCQAGKV 331

Query: 273 EKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++  K  +E  +L  V  D+ T N L  +  +        ++++ M+ +    ++VT+NI
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNI 391

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           V++   + G +E+     K M   G+ P+ ITY +L+ AY KA  + K   ++ ++  S 
Sbjct: 392 VVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSG 451

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           + +DT   N ++    +    E+  EL  +  +R  VPD +++ T++ AY      E A 
Sbjct: 452 LKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPAL 511

Query: 452 NLENKM 457
            L ++M
Sbjct: 512 YLWDEM 517



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 6/269 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFT--KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F L+ +      +  TFT   L+  L K K+ E+A  L       G  P    Y  ++
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVM 498

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLG 215
           +AY +    + A    ++M S     P +YTY+ LIK  CT     + I+K L E+   G
Sbjct: 499 AAYFKENKPEPALYLWDEM-SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDK-LNELMKKG 556

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TYN II  Y K    E+     + M+E+    PD+ T N++++     G +EK 
Sbjct: 557 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENY-FKPDVVTCNTLMNGLCLHGKLEKA 615

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K +  +   G K D+ T N L ++  + G  D        M+ R   P   TYN+V+  
Sbjct: 616 IKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSA 675

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
             +AG  E+ +    K+   G      +Y
Sbjct: 676 LSEAGRSEEAQNMLHKLDESGKLSERFSY 704


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 179/395 (45%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L +   + ++  Y      +  ++  + + KQ   A  LF+ M    L P  
Sbjct: 133 RENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDR 192

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L++++G+ G+ D A S +  M+       D+  YS LI+   +   +     I +
Sbjct: 193 YTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDLVLYSNLIELSRRLCDYSKAISIFS 251

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------- 250
            +   GI    V YN++I+ YGKAK F+E       M E+G                   
Sbjct: 252 RLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENH 311

Query: 251 ---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                           C  D+ T N MI  YG    +++ ++ +     M ++ ++ + N
Sbjct: 312 KFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 371

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + + YG A ++ +   +   MQ++     VVTYN +I+ +GK    EK     ++M+ R
Sbjct: 372 TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 431

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +  ++ +++ +S V +D   +  +I AY + G +   
Sbjct: 432 GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHA 491

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K    +PDNI   T I      G TE A
Sbjct: 492 KRLLHELK----LPDNIPRETAITILAKAGSTEEA 522



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 37/334 (11%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+    ++A  LF  +    ++P+V  Y  ++  YG++ L  EA      M+   D + +
Sbjct: 343 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 401

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +   + F 
Sbjct: 402 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 461

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 284
            +  S G   D     +MI AY   G +   ++  +E  L                    
Sbjct: 462 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTE 520

Query: 285 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                       G   DI     +   Y R   Y  +  V + M+   +FP      +V+
Sbjct: 521 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVL 580

Query: 334 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
             +GK    EK +  +++M+  G + P+ + +  ++S YS       V+S+  ++E SD 
Sbjct: 581 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFERLE-SDP 638

Query: 393 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 425
            +++   + +++A Y +A  +     +   M+ER
Sbjct: 639 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 672


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 177/391 (45%), Gaps = 39/391 (9%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           WQ +L +   + ++  Y      +  ++  + + KQ + A  LF+ M    L P    Y+
Sbjct: 3   WQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYS 62

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            L++++G+ G+ D A S +  M+       D+  YS LI+   +   +     I + +  
Sbjct: 63  TLITSFGKEGMFDSALSWLQKMEQ-DRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 121

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------------------- 250
            GI    V YN++I+ YGKAK F E       M E+G                       
Sbjct: 122 SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 181

Query: 251 -----------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                       C  D+ T N MI  YG    +++ ++ +     M ++ ++ + N + +
Sbjct: 182 ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILR 241

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            YG A ++ +   +   MQ++     VVTYN +I+ +GK    EK     ++M+ RG++P
Sbjct: 242 VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEP 301

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N+ITY +++S + KAG + +  ++ +++ +S V +D   +  +I AY + G +     L 
Sbjct: 302 NAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLL 361

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             +K    +PDNI   T I      G TE A
Sbjct: 362 HELK----LPDNIPRETAITILAKAGRTEEA 388



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PSV  Y  ++    ++   D A    ++M+  +   PD YTYS LI S  K   FD    
Sbjct: 21  PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALS 79

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            L +M    +    V Y+ +I+   +   + +  S FS +  SG   PD+   NSMI+ Y
Sbjct: 80  WLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSG-ITPDLVAYNSMINVY 138

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G +    +      E N  GV  +  + + L   Y     + +  SV   M++      +
Sbjct: 139 GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDL 198

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T NI+I+ +G+   +++ +  F  ++   ++PN ++Y +++  Y +A L  +   + R 
Sbjct: 199 TTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRL 258

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++  D+  +   +N +I  YG+  + EK   L   M+ R   P+ IT++T+I  +   G 
Sbjct: 259 MQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGK 318

Query: 447 TEAAQNLENKM 457
            + A  L  K+
Sbjct: 319 LDRAATLFQKL 329



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 37/334 (11%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+    ++A  LF  +    ++P+V  Y  ++  YG++ L  EA      M+   D + +
Sbjct: 209 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 267

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +   + F 
Sbjct: 268 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 327

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 284
            +  S G   D     +MI AY   G +   ++  +E  L                    
Sbjct: 328 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTE 386

Query: 285 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                       G   DI     +   Y R   Y  +  V + M+   +FP      +V+
Sbjct: 387 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVL 446

Query: 334 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
             +GK    EK +  +++M+  G + P+ + +  ++S YS       V+S+ +++E SD 
Sbjct: 447 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFQRLE-SDP 504

Query: 393 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 425
            +++   + +++A Y +A  +     +   M+ER
Sbjct: 505 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 538


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 165/338 (48%), Gaps = 15/338 (4%)

Query: 63  NIEKKVSSKKYKNLWPKPVLEAL------------DEAIKQ-KKWQLALKIFGLLRQQQW 109
           +I + VSS   +  W     EAL            ++ +KQ   +  AL  F  L++Q  
Sbjct: 417 HIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG 476

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    T+T ++  LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA 
Sbjct: 477 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAM 536

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +  N M+  + CKPD  TY  LI    K    D+   +   M   G+     TY+ II+ 
Sbjct: 537 NVFNQMQE-AGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 595

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            GKA         F  MV+  GC P++ T N M+  +  + N +   K Y +    G + 
Sbjct: 596 LGKAGHLPAAHKLFCEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 654

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T +I+ +  G  G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  +++
Sbjct: 655 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 714

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           + M H G++PN  T  SL+S + +   I +   +L+ +
Sbjct: 715 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 752



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 478 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 537

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 538 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 596

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 597 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 656

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 657 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 716

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M      P+  T  +++  +  +     A  L   M+A+
Sbjct: 717 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 755



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 476 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 534

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 535 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 594

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 595 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 654

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 655 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 714

Query: 455 NKMI 458
             M+
Sbjct: 715 QAML 718



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 112/247 (45%), Gaps = 9/247 (3%)

Query: 214 LGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           LG+   A   N ++   + YG A  F      F  +    G   D  T  +M+   G + 
Sbjct: 442 LGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKHDGHTYTTMVGNLGRAK 495

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
               + K  +E    G + +  T N L  SYGRA   ++  +V + MQ+    P  VTY 
Sbjct: 496 QFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYC 555

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+   KAG ++   + +++M+  G+ P++ TY  +++   KAG +     +  ++ + 
Sbjct: 556 TLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ 615

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               +   +N ++  + +A + +   +L+  M+     PD +T++ +++     G  E A
Sbjct: 616 GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEA 675

Query: 451 QNLENKM 457
           + +  +M
Sbjct: 676 EAVFTEM 682



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 473 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 532

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 533 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 579



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           EA+   ++QK W     ++GLL                + + GK    E+A   ++ ML 
Sbjct: 676 EAVFTEMQQKNWIPDEPVYGLL----------------VDLWGKAGNVEKAWQWYQAMLH 719

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            GL+P+V    +L+S + +   + EA+  + +M ++   +P + TY++L+  CT
Sbjct: 720 AGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG-LRPSLQTYTLLLSCCT 772


>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 580

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 204/458 (44%), Gaps = 17/458 (3%)

Query: 1   MHLSNSIFTPPTTATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFA 60
           +H S    T P  A         P+ RI      P   ++  +  EA+ +L ++L ++  
Sbjct: 67  LHASYGTITHPRAA---------PLSRISCGGPRPPKSKKSNLNSEAQ-ELVRLLTSKIR 116

Query: 61  IKNIEK--KVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
             + E   K  +K  K +  +      +E  K   W   L++F  +++Q+WY A    ++
Sbjct: 117 SNDKEVLLKTLNKYVKQVRTQHCFLLFEELGKHDNWLQCLEVFRWMQKQRWYIADNGIYS 176

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS----GLLDEAFSTIND 174
           KL+ ++GK  Q   A  LF  M + G +P   VY AL++A+ +S      L +A      
Sbjct: 177 KLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLRSRDKIKALAKAIGYFQK 236

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK +  CKP++ TY+IL+++  +    + +  +  ++    +     T+N ++D YGK  
Sbjct: 237 MKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNG 296

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              EME+  + M +S  C PD+ T N +I +YG      KME+ +        +  + T 
Sbjct: 297 MIREMEAVLARM-KSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPSLPTF 355

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +YG+A + DK   V   M    +  + VT+  +I  +G    + +  + F ++  
Sbjct: 356 NSMILNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYGFCDCVSRAAQLFDELVE 415

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             +     T  +++  Y   GL  + DS+  +  +  +  D+  F  +  AY +A   E 
Sbjct: 416 SKVHIKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSSTFKLLYKAYTKANQKEL 475

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
           + +L   M +   +P+   F   + A  +L     + N
Sbjct: 476 LDKLLKHMDKDGIIPNKRFFLDALGAVASLPANSESAN 513


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 165/338 (48%), Gaps = 15/338 (4%)

Query: 63  NIEKKVSSKKYKNLWPKPVLEAL------------DEAIKQ-KKWQLALKIFGLLRQQQW 109
           +I + VSS   +  W     EAL            ++ +KQ   +  AL  F  L++Q  
Sbjct: 300 HIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG 359

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    T+T ++  LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA 
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAM 419

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +  N M+  + CKPD  TY  LI    K    D+   +   M   G+     TY+ II+ 
Sbjct: 420 NVFNQMQE-AGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            GKA         F  MV+  GC P++ T N M+  +  + N +   K Y +    G + 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T +I+ +  G  G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  +++
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           + M H G++PN  T  SL+S + +   I +   +L+ +
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M      P+  T  +++  +  +     A  L   M+A+
Sbjct: 600 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 455 NKMI 458
             M+
Sbjct: 598 QAML 601



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 254
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           + +++     G  E A+ +  +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A  +F  ++Q+ W       +  L+ + GK    E+A   ++ ML  GL+P+V    +L+
Sbjct: 558 AEAVFTEMQQKNWIPDE-PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLL 616

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           S + +   + EA+  + +M ++   +P + TY++L+  CT
Sbjct: 617 STFLRVNKIAEAYELLQNMLALG-LRPSLQTYTLLLSCCT 655


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 146/287 (50%), Gaps = 3/287 (1%)

Query: 86  DEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ +KQ   +  AL  F  L++Q  ++    T+T ++  LG+ KQ    + L + M+ DG
Sbjct: 320 NQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDG 379

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP+   Y  L+ +YG++  L+EA +    M+  + C+PD  TY  LI    K    D+ 
Sbjct: 380 CKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQE-AGCEPDRVTYCTLIDIHAKAGFLDIA 438

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +   M   G+     TY+ II+  GKA         F  MV  G C P++ T N MI+
Sbjct: 439 MDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMIA 497

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  + N E   K Y +    G + D  T +I+ +  G  G  ++   V   MQ++ + P
Sbjct: 498 LHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVP 557

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
               Y ++++ +GKAG++EK  +++++M H G++PN  T  SL+S +
Sbjct: 558 DEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTF 604



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 135/279 (48%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ ++ +  +  +F  I ++L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 346 KHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMN 405

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 406 VFKQMQEAG-CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCL 464

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M  +   P +VT+NI+I    KA + E   + ++ M++ G +P+ 
Sbjct: 465 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 524

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G + + + +  +++  + + D P +  ++  +G+AG+VEK  + +  
Sbjct: 525 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQE 584

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M      P+  T  +++  +  +     A NL   M+A+
Sbjct: 585 MLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL 623



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T++   G+AK+F  +      MV+ G C P+  T N +I +YG +  + +
Sbjct: 344 GFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDG-CKPNTVTYNRLIHSYGRANYLNE 402

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               + +    G + D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 403 AMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIIN 462

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAGH+      F +M  +G  PN +T+  +++ ++KA        + R ++N+    
Sbjct: 463 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 522

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +E+   +F  M+ ++ VPD   +  ++  +   G  E A    
Sbjct: 523 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWY 582

Query: 455 NKMI 458
            +M+
Sbjct: 583 QEML 586



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 11/210 (5%)

Query: 263 ISAYGNSGNIEKMEKWYNEFNLM-------GVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + AY  +  +++M+ + N            G K D  T   +  + GRA  +  +  ++D
Sbjct: 314 MDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLD 373

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M K    P  VTYN +I ++G+A ++ +    FK+M+  G +P+ +TYC+L+  ++KAG
Sbjct: 374 EMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAG 433

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +     + ++++ + +  DT  ++ II+  G+AG +     LF  M  + C P+ +TF 
Sbjct: 434 FLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 493

Query: 436 TMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            MI  +      E A  L   M    +N+G
Sbjct: 494 IMIALHAKARNYETALKLYRDM----QNAG 519



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 6/231 (2%)

Query: 107 QQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           +Q  +A C+    T+  L+ +  K    + A  +++ M + GL P    Y+ +++  G++
Sbjct: 408 KQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKA 467

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           G L  A     +M     C P++ T++I+I    K   ++   K+  +M   G +   VT
Sbjct: 468 GHLPAAHRLFCEMVG-QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVT 526

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y+ +++  G     EE E  F+ M       PD      ++  +G +GN+EK  +WY E 
Sbjct: 527 YSIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVEKAWQWYQEM 585

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
              G++ ++ T N L  ++ R     +  +++  M      P++ TY +++
Sbjct: 586 LHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 636



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + ++ ALK++  + Q   +Q    T++ +M +LG C   E+A  +F  M      P  
Sbjct: 501 KARNYETALKLYRDM-QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDE 559

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  LV  +G++G +++A+    +M   +  +P+V T + L+ +  + HR      +L 
Sbjct: 560 PVYGLLVDLWGKAGNVEKAWQWYQEMLH-AGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQ 618

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
            M  LG+  S  TY  ++     A+   +M      M  SG  HP
Sbjct: 619 SMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMAVSG--HP 661


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 165/338 (48%), Gaps = 15/338 (4%)

Query: 63  NIEKKVSSKKYKNLWPKPVLEAL------------DEAIKQ-KKWQLALKIFGLLRQQQW 109
           +I + VSS   +  W     EAL            ++ +KQ   +  AL  F  L++Q  
Sbjct: 300 HIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPG 359

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    T+T ++  LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA 
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAM 419

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +  N M+  + CKPD  TY  LI    K    D+   +   M   G+     TY+ II+ 
Sbjct: 420 NVFNQMQE-AGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            GKA         F  MV+  GC P++ T N M+  +  + N +   K Y +    G + 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T +I+ +  G  G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  +++
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           + M H G++PN  T  SL+S + +   I +   +L+ +
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M      P+  T  +++  +  +     A  L   M+A+
Sbjct: 600 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 455 NKMI 458
             M+
Sbjct: 598 QAML 601



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 254
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           + +++     G  E A+ +  +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           EA+   ++QK W     ++GLL                + + GK    E+A   ++ ML 
Sbjct: 559 EAVFTEMQQKNWIPDEPVYGLL----------------VDLWGKAGNVEKAWQWYQAMLH 602

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            GL+P+V    +L+S + +   + EA+  + +M ++   +P + TY++L+  CT
Sbjct: 603 AGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG-LRPSLQTYTLLLSCCT 655


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 173/379 (45%), Gaps = 38/379 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+  G++ Q      +  T   ++  LG C +  +A  +FE M  +GLKP    Y AL+
Sbjct: 289 ALEFLGVV-QGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALL 347

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE----------- 205
             Y ++GLL +A   +++M+  S   P+  TYS LI +     R++              
Sbjct: 348 RGYVKAGLLKDAEFVVSEMER-SGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNV 406

Query: 206 ------------------------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
                                   ++L EM   G+    V YN +ID +GK    +   +
Sbjct: 407 QPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMA 466

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           +F  M+ S G  PD  T N++I  +  +G  ++ E+ + E    G      T NI+  S+
Sbjct: 467 TFDRML-SEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSF 525

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G    +D +++++  M+ +   P  VTY  +I+ +GK+G      E    MK  G+KP+S
Sbjct: 526 GDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSS 585

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L++AY++ GL  +  S  R +    +       N +I+A+G+     +   +   
Sbjct: 586 TMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQY 645

Query: 422 MKERHCVPDNITFATMIQA 440
           MKE    PD +T+ T+++A
Sbjct: 646 MKENDLKPDVVTYTTLMKA 664



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 166/345 (48%), Gaps = 11/345 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+SA  ++  L++A + I  M+
Sbjct: 171 YSILIHALGQSEKLYEAFLLSQ---RQNLTPLT--YNALISACARNNDLEKALNLITRMR 225

Query: 177 SVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              D  P D   YS++I+S  + +R D  +++K+  E+    +E      N II G+ KA
Sbjct: 226 Q--DGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKA 283

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               +    F  +V+  G      TL ++I A GN G   + E  + E    G+K   + 
Sbjct: 284 GDLSK-ALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRA 342

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L + Y +AG+      V+  M++    P   TY+ +I+ +G AG  E      K+M+
Sbjct: 343 YNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEME 402

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
              ++PN+  +  ++S+Y   G   K   +LR++ENS V  D  F+N +I  +G+   ++
Sbjct: 403 ASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLD 462

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                F  M      PD +T+ T+I  +   G  + A+ L  +M+
Sbjct: 463 HAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMM 507


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           A  LF  M+ DG + +V  YT ++  Y  Q   LD A   +  MK  S  KPD   Y+ L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKE-SGKKPDEILYNCL 59

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +       R +  EKIL +M    +  + VTY  +I  Y    + ++    F  M + G 
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGE 119

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+ +T N++I  YG  G  ++  + Y+E + +G   D+ T NI    YG+ G+ + M 
Sbjct: 120 -SPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDME 178

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++D M  +   P  VTYN +++ + K  +  K  E  ++M   G +PN  TY  ++S+ 
Sbjct: 179 RLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSA 238

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   +++  V+ +   ++ ++S YG+ G   +  +L+  M E  C+P  
Sbjct: 239 RKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCI 298

Query: 432 ITFATMIQAYNALGMTEAA 450
           I ++ +I++Y   GM + A
Sbjct: 299 IAYSGLIESYGHHGMYQEA 317



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  L EVM   G KP   +Y  LV+    SG L+ A   ++DMK       ++ TY+ 
Sbjct: 35  DHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKR-DKVSANLVTYTN 93

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LIK      R     K+  EM   G   ++ TYN +I GYG+   F+E    +  M +  
Sbjct: 94  LIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM-DGV 152

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC  D+ T N  I+ YG  G +E ME+  +E +  GV  D  T N L   Y +   + K 
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKA 212

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M +  + P + TYNI++ +  K   + +  + F+ +K +G+ PN +TY +++S 
Sbjct: 213 HEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL 272

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y + GL  +   +  ++  +  I     ++ +I +YG  G  ++    F  M++   VPD
Sbjct: 273 YGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPD 332

Query: 431 NITFATMIQAYNALGMTEAAQNL 453
              +  ++ AY   G    A+ L
Sbjct: 333 TKIYTALMDAYGKAGRCREAELL 355



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 155/322 (48%), Gaps = 3/322 (0%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +   + + A KI   +++ +   A   T+T L+       + +    LF+ M   G  P+
Sbjct: 64  VNSGRLEAAEKILDDMKRDK-VSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPN 122

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              Y AL+  YG+ GL  EA    ++M  V  C  DV+TY+I I    K    + +E++L
Sbjct: 123 SWTYNALIQGYGRKGLFKEALELYDEMDGVG-CAKDVHTYNIAIAMYGKRGLLEDMERLL 181

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM   G+    VTYNT++D Y K   F +       M E+ G  P+I+T N M+S+   
Sbjct: 182 DEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEA-GYRPNIWTYNIMLSSARK 240

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
             ++ +  + +      GV  +I T + +   YGR G+Y +   + D M +    P ++ 
Sbjct: 241 EQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIA 300

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y+ +IE++G  G  ++    F+ M+  G+ P++  Y +L+ AY KAG   + + +  ++ 
Sbjct: 301 YSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMT 360

Query: 389 NSDVILDTPFFNCIISAYGQAG 410
               + D   +  ++ A+  AG
Sbjct: 361 KEGFVPDGITYGILVRAFANAG 382



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 2/228 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+   + M GK    E    L + M + G+ P    Y  L+  Y +     +A   + +
Sbjct: 159 HTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILRE 218

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M      +P+++TY+I++ S  K        ++   +   G+  + VTY+ ++  YG+  
Sbjct: 219 MTEAG-YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHG 277

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E    +  M+E+G C P I   + +I +YG+ G  ++    + +    G+  D +  
Sbjct: 278 LYTEAAKLWDEMIEAG-CIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIY 336

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
             L  +YG+AG   +   +   M K  F P  +TY I++  F  AG +
Sbjct: 337 TALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)

Query: 98  LKIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +K   +LR+  +  Y+    T+  ++    K +   +A+ LFE + S G+ P++  Y+A+
Sbjct: 210 VKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAM 269

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           +S YG+ GL  EA    ++M     C P +  YS LI+S      +        +M   G
Sbjct: 270 LSLYGRHGLYTEAAKLWDEMIEAG-CIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSG 328

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
           I      Y  ++D YGKA +  E E  +  M + G   PD  T   ++ A+ N+G +
Sbjct: 329 IVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFV-PDGITYGILVRAFANAGRL 384


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 167/346 (48%), Gaps = 2/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF+ LMV  GK +  +    L E M S GL+P++  YT  +   G+ G +DEA+  +  
Sbjct: 230 KTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKR 289

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M     C PDV TY++LI +     + D    +  +M     +   VTY T++D +    
Sbjct: 290 MDD-DGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCG 348

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +++E  ++ M E+ G  PD+ T   +++A   +G I +     +     GV  ++ T 
Sbjct: 349 HLDKVEKIWTEM-EADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTY 407

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     RA   D    +   M+     PT  TY ++I+  GK+GH  K  E F+KMK 
Sbjct: 408 NTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA 467

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ PN +   + + + ++ G + +  ++  ++++S +  D+  +N ++  Y + G V++
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDE 527

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             +L   M +  C PD I   ++I      G  E A  +  +M  M
Sbjct: 528 AIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 160/326 (49%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+     C   ++   ++  M +DG  P V  +T LV+A  ++G ++EAF  ++ M
Sbjct: 336 TYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM 395

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P+++TY+ LI    + +R D    + + M  LG+E +A TY  +ID +GK+  
Sbjct: 396 RK-QGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGH 454

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +   +F  M ++ G  P+I   N+ + +    G + + +  +NE    G+  D  T N
Sbjct: 455 PGKALETFEKM-KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K Y + G  D+   ++  M K    P V+  N +I+T  KAG +E+  + F +M+  
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P  +TY  L++   K G I K   +   +       +T  FN ++    +  +V+  
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            ++F  M   +C PD +TF T+I  +
Sbjct: 634 LKMFYKMTTMNCRPDVLTFNTIIHGF 659



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 169/358 (47%), Gaps = 5/358 (1%)

Query: 80   PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
            P+++ L    K KK  +A  +F    ++   +   + +  L+    +    E A  LFE 
Sbjct: 759  PIIKVL---CKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEE 815

Query: 140  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
            M S G  P    Y +L+ A+G+SG ++E F   ++M +   CKP+  TY+++I +  K +
Sbjct: 816  MKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLT-RGCKPNTITYNMVISNLVKSN 874

Query: 200  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
            R D    +   +       +  T+  +IDG  K+ + ++    F  MV   GC P+    
Sbjct: 875  RLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHY-GCRPNSAIY 933

Query: 260  NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            N +++ YG  G+++   +++      G++ D+++  IL      AG  D      + +++
Sbjct: 934  NILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQ 993

Query: 320  RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                P +V YN++I   G++   E+    F +M++RG+ P+  TY SL+      G+I +
Sbjct: 994  AGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEE 1053

Query: 380  VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               I  +++   +  +   +N +I  Y  +G+ E    ++  M    C P+  TFA +
Sbjct: 1054 AGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 144  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            G+KP++ VY  L+  + +   ++ A++   +MKS + C PD +TY+ LI +  K  + + 
Sbjct: 785  GVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKS-AGCAPDTFTYNSLIDAHGKSGKINE 843

Query: 204  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            +  +  EM   G + + +TYN +I    K+ + ++    +  +V SG   P   T   +I
Sbjct: 844  LFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV-SGDFSPTPCTFGPLI 902

Query: 264  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 SG ++   + ++     G + +    NIL   YG+ G  D        M K    
Sbjct: 903  DGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR 962

Query: 324  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            P + +Y I+++    AG ++    YF+K+K  G+ P+ + Y  +++   ++    +  S+
Sbjct: 963  PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSL 1022

Query: 384  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              +++N  ++ D   +N +I   G  G +E+ G+++  ++     P+  T+  +I+ Y  
Sbjct: 1023 FHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTL 1082

Query: 444  LGMTEAAQNLENKMIA 459
             G +E A  +  KM+ 
Sbjct: 1083 SGNSELAYGIYKKMMV 1098



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 142/321 (44%), Gaps = 40/321 (12%)

Query: 181  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMS-YLGIECSAVTYNTIIDGYGKAKKFEEM 239
            CK D     I IK   K  +  +   +  + +  LG++ +   YN +IDG+ +    E  
Sbjct: 751  CKDDSVLIPI-IKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVA 809

Query: 240  ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI--- 296
             + F  M +S GC PD FT NS+I A+G SG I ++   Y+E    G K +  T N+   
Sbjct: 810  WNLFEEM-KSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868

Query: 297  -LTKS------------------------YG-------RAGMYDKMRSVMDFMQKRFFFP 324
             L KS                        +G       ++G  D    + D M      P
Sbjct: 869  NLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRP 928

Query: 325  TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                YNI++  +GK GH++   E+FK+M   G++P+  +Y  LV     AG +       
Sbjct: 929  NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYF 988

Query: 385  RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             +++ + +  D   +N +I+  G++   E+   LF  M+ R  VPD  T+ ++I     +
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIV 1048

Query: 445  GMTEAAQNL--ENKMIAMKEN 463
            GM E A  +  E + I +K N
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPN 1069



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 9/265 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   GK   P +A   FE M + G+ P++    A + +  + G L EA +  N++
Sbjct: 441 TYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNEL 500

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           KS S   PD  TY++++K  +K  + D   K+L+EMS +  E   +  N++ID   KA +
Sbjct: 501 KS-SGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGR 559

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE    F  M E     P + T N +++  G  G I+K  + +   N  G   +  T N
Sbjct: 560 VEEAWQMFCRM-EEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFN 618

Query: 296 ILTKSYGRAGMYD---KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            L     +    D   KM   M  M  R   P V+T+N +I  F K   I+     F +M
Sbjct: 619 TLLDCLCKNDEVDLALKMFYKMTTMNCR---PDVLTFNTIIHGFIKQNQIKNAIWLFHQM 675

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLI 377
           K + ++P+ +T C+L+    K+G I
Sbjct: 676 K-KLLRPDHVTLCTLLPGVIKSGQI 699



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 11/277 (3%)

Query: 172 INDMKSVSDC------KPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTY 223
           + DM  V D       + +V TY I+ KS   F R  L +    L +M   G   +A +Y
Sbjct: 140 VEDMAFVFDLMQRQIIRRNVDTYLIIFKSL--FIRGGLRQAPSALEKMREAGFVLNAYSY 197

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           N +I    ++   +E    +  MV S G  P + T ++++ A G   NI+ +     E  
Sbjct: 198 NGLIHFLLQSGFCKEALEVYRRMV-SEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEME 256

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
            MG++ +I T  I  +  GR G  D+   +M  M      P VVTY ++I+    A  ++
Sbjct: 257 SMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLD 316

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
                F KMK    KP+ +TY +L+  +S  G + KV+ I  ++E      D   F  ++
Sbjct: 317 DAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILV 376

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +A  +AG + +  +L  TM+++  +P+  T+ T+I  
Sbjct: 377 NALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISG 413



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 120/268 (44%), Gaps = 2/268 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           ++Q       T+  L+  L +  + + A  LF  M S G++P+   Y  L+  +G+SG  
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHP 455

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            +A  T   MK+     P++   +  + S  +  R    + +  E+   G+   +VTYN 
Sbjct: 456 GKALETFEKMKA-RGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNM 514

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++  Y K  + +E     S M +   C PD+  +NS+I     +G +E+  + +     M
Sbjct: 515 MMKCYSKVGQVDEAIKLLSEMSKVQ-CEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            +   + T NIL    G+ G   K   + + M      P  +T+N +++   K   ++  
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            + F KM     +P+ +T+ +++  + K
Sbjct: 634 LKMFYKMTTMNCRPDVLTFNTIIHGFIK 661



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 89/200 (44%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N M+        +E M   ++      ++ ++ T  I+ KS    G   +  S ++ M
Sbjct: 126 TCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKM 185

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++  F     +YN +I    ++G  ++  E +++M   G+KP+  T+ +L+ A  K   I
Sbjct: 186 REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNI 245

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +L ++E+  +  +   +   I   G+ G +++   +   M +  C PD +T+  +
Sbjct: 246 KTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVL 305

Query: 438 IQAYNALGMTEAAQNLENKM 457
           I A       + A  L  KM
Sbjct: 306 IDALCTARKLDDAMCLFTKM 325



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 36/224 (16%)

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  S+   M E+G    + ++ N +I     SG  ++  + Y      G+K  ++T +
Sbjct: 175 LRQAPSALEKMREAGFV-LNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFS 233

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  + G+      +  +++ M+     P + TY I I   G+ G I++     K+M   
Sbjct: 234 ALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDD 293

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+ +TY  L+ A   A    K+D  +                C              
Sbjct: 294 GCGPDVVTYTVLIDALCTA---RKLDDAM----------------C-------------- 320

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             LF  MK     PD +T+ T++  ++  G  +  + +  +M A
Sbjct: 321 --LFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEA 362


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 168/331 (50%), Gaps = 2/331 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+   +T   L+    +    EQ   L +     GLK S   Y  L+ AY ++G LD+A 
Sbjct: 250 YKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAK 309

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +  ++MK V +   + + YS L+ +     ++D   ++L +M    I+ +   +N +ID 
Sbjct: 310 AAFHNMK-VENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDT 368

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           YGK  +  +   +F+ M +  G  PD+ T NS+I A+  +G I +      +        
Sbjct: 369 YGKFGRLPQAMRTFAQM-DKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVP 427

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            + T NI+  + G    + +M  ++D M+ +   P VVTY  +++++G +    +  EY 
Sbjct: 428 SLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYL 487

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K+MK +G++P++  YC+L ++Y+K GL  +   + + +E   V L+    N +I+A+G A
Sbjct: 488 KQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVA 547

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           G   +   +F  + E    PD +T+ T+++A
Sbjct: 548 GKYVEAFSVFDYILEVGMSPDVVTYTTLMKA 578



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 148/299 (49%), Gaps = 2/299 (0%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           +GL+    +Y  +++AY ++G  D+AF  +  M++  D  PDV +YS LI++     R D
Sbjct: 178 EGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQAC-DLVPDVRSYSSLIETLVVVRRLD 236

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E   AEM     + +  T N ++  Y +    E++E       E  G     F+   +
Sbjct: 237 DAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQD-AEDAGLKLSTFSYGLL 295

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I AY  +G +++ +  ++   +  V A+    + L  +Y  A  +D    ++  M     
Sbjct: 296 IDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNI 355

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P    +NI+I+T+GK G + +    F +M   G KP+ +T+ SL+ A+ +AGLI +   
Sbjct: 356 KPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALD 415

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +L+Q++  + +     +N I++A G     ++M  L   M+ +   P+ +T+ T++ +Y
Sbjct: 416 LLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSY 474



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 135/254 (53%), Gaps = 2/254 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  L+   GK  +  QA   F  M  +G KP V  + +L+ A+ ++GL+ EA   +  M+
Sbjct: 362 FNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQ 421

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
              +C P ++TY+I++ +    +R+  +  +L EM + G++ + VTY T++D YG +K++
Sbjct: 422 E-RECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRY 480

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E  S +   ++S G  P      ++ ++Y   G  E+  + +      GV+ ++  LN+
Sbjct: 481 RE-ASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNL 539

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  ++G AG Y +  SV D++ +    P VVTY  +++   KA  ++++ + +++M   G
Sbjct: 540 LINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAG 599

Query: 357 MKPNSITYCSLVSA 370
             P+ +    L SA
Sbjct: 600 CTPDDMAKDMLRSA 613



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 2/271 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +++LMV     +Q +    L + M +  +KP+  ++  L+  YG+ G L +A  T   M 
Sbjct: 327 YSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMD 386

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                KPDV T++ LI++  +         +L +M       S  TYN I++  G   ++
Sbjct: 387 K-EGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRW 445

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +EM      M    G  P++ T  +++ +YG S    +  ++  +    G++        
Sbjct: 446 KEMALLLDEM-RFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCA 504

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  SY + G+ ++   V   M+K      +   N++I  FG AG   +    F  +   G
Sbjct: 505 LANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVG 564

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           M P+ +TY +L+ A  KA  + +V  +  Q+
Sbjct: 565 MSPDVVTYTTLMKALIKAEQLDQVPDVYEQM 595



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 157/374 (41%), Gaps = 81/374 (21%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K  + E+A LLF+ +   G+ P    Y A+V    +   L+ A   +N M+  S  +P
Sbjct: 88  LSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRG-SGFQP 146

Query: 184 DVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA----KKFEE 238
           D   Y+++ ++C K     D+I ++ A +   G+E     YN +I+ Y +A    K F+ 
Sbjct: 147 DNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQY 206

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
           M      ++++    PD+ + +S+I        ++  E  Y E      K +++TLN L 
Sbjct: 207 M-----GLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALL 261

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y R  +                                   +E++E+  +  +  G+K
Sbjct: 262 SAYTRKSL-----------------------------------LEQVEKLMQDAEDAGLK 286

Query: 359 PNSITYCSLVSAYSKAGLI---------MKVDSI-------------------------- 383
            ++ +Y  L+ AYS+AG +         MKV+++                          
Sbjct: 287 LSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRL 346

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L+ +  S++  +   FN +I  YG+ G + +    F  M +    PD +T+ ++I+A+  
Sbjct: 347 LKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCR 406

Query: 444 LGMTEAAQNLENKM 457
            G+   A +L  +M
Sbjct: 407 AGLITEALDLLKQM 420


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 162/316 (51%), Gaps = 5/316 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 202
           G  PSV  Y A++ A   + L   A    + M S     P+VYTY+IL+++ C + HR +
Sbjct: 118 GYAPSVLAYNAVLLALSDASL-PSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRKE 175

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            +  +L +M   G + +AVTYNT++  + +A + +  E     M E GG  P++ T NS+
Sbjct: 176 AL-SVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMRE-GGLKPNLVTFNSV 233

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++    +G +E   K ++E    G+  D  + N L   Y + G   +  SV   M ++  
Sbjct: 234 VNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVT+  +I    KAG++E+     ++M+ RG++ N IT+ +L+  + K G +     
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            +R++    +      +N +I+ Y   G +++  EL   M+ +   PD +T++T++ AY 
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413

Query: 443 ALGMTEAAQNLENKMI 458
             G T +A  L  +M+
Sbjct: 414 KNGDTHSAFQLNQQML 429



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 36/383 (9%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y      +  +++ L     P  A   F+ MLSDG+ P+V  Y  LV A    G   EA 
Sbjct: 119 YAPSVLAYNAVLLALSDASLP-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           S + DM+  + C P+  TY+ L+ +  +    D  E+++  M   G++ + VT+N++++G
Sbjct: 178 SVLRDMRG-AGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 230 YGKAKKFEEMESSFSAMVESG------------------GCH----------------PD 255
             KA + E+    F  MV+ G                  GC                 PD
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T  S+I     +GN+E+      E    G++ +  T   L   + + G  D     + 
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M++    P+VV YN +I  +   G +++  E  ++M+ +G+KP+ +TY +++SAY K G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                  + +Q+  + V+ D   ++ +I    +   +     LF  M      PD +T+ 
Sbjct: 417 DTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYT 476

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           ++I  +   G  E A +L ++M+
Sbjct: 477 SLIDGHCKEGNVERALSLHDEMV 499



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 6/326 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  + K  + E A  +F+ M+ +GL P    Y  LV  Y + G   EA S   +M
Sbjct: 229 TFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEM 288

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     PDV T++ LI    K    +    ++ EM   G++ + +T+  +IDG+ K K 
Sbjct: 289 -TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCK-KG 346

Query: 236 FEEMESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           F  ++ +  A+ E   C   P +   N++I+ Y   G +++  +   E    GVK D+ T
Sbjct: 347 F--LDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT 404

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + +  +Y + G       +   M +    P  +TY+ +I    +   +      FK M 
Sbjct: 405 YSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMI 464

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++P+ +TY SL+  + K G + +  S+  ++  + V+ D   ++ +I+   ++   +
Sbjct: 465 SLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTK 524

Query: 414 KMGELFLTMKERHCVPDNITFATMIQ 439
           +   L   +     VP NI +  +++
Sbjct: 525 EAQRLLFKLYHEEPVPANIKYDALMR 550



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 155/358 (43%), Gaps = 17/358 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+ ++ K    E+A  L   M   GL+ +   +TAL+  + + G LD+A   + +M
Sbjct: 299 TFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREM 358

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +P V  Y+ LI       R D   +++ EM   G++   VTY+TI+  Y K   
Sbjct: 359 RQCR-IQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGD 417

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                     M+E+G   PD  T +S+I        +      +     +G++ D  T  
Sbjct: 418 THSAFQLNQQMLENG-VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYT 476

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  ++  S+ D M K    P VVTY+++I    K+   ++ +    K+ H 
Sbjct: 477 SLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE 536

Query: 356 GMKPNSITY-----C----------SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
              P +I Y     C          +L+  +   GL+ + D + + + + +  LD   ++
Sbjct: 537 EPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYS 596

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +I  + + G+V K       M +    P++ +  ++I+     GM   A  +  +++
Sbjct: 597 VLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLL 654



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 141/314 (44%), Gaps = 17/314 (5%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  L   M + G+KP V  Y+ ++SAY ++G    AF  +N     +   PD  TYS 
Sbjct: 384 DEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ-LNQQMLENGVLPDAITYSS 442

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI+   +  R      +   M  LG++   VTY ++IDG+ K    E   S    MV++G
Sbjct: 443 LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAG 502

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKW---------------YNEFNLMGVKADIQTLN 295
              PD+ T + +I+    S   ++ ++                Y+        A+++++ 
Sbjct: 503 -VLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVL 561

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K +   G+ ++   V   +  R +      Y+++I    + G++ K   + K+M   
Sbjct: 562 ALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQC 621

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PNS +  SL+    + G++++ D +++Q+ N   + D      +I    + G+V+ +
Sbjct: 622 GFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAV 681

Query: 416 GELFLTMKERHCVP 429
            ++   M     +P
Sbjct: 682 LDVLHGMARDGLLP 695


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 156/349 (44%), Gaps = 35/349 (10%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++L    K  V  Y  L+ A+GQ  L  EA ST   +   + C P+  TY++LIK+    
Sbjct: 152 ILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLE-ARCIPNEDTYALLIKAYCLS 210

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------- 250
              +  E +  EM   G+  SAV YN+ I+G  K     + E  F  M   G        
Sbjct: 211 GLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETY 270

Query: 251 --------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
                                      C P+I T  ++++A+   G  EK E+ + +   
Sbjct: 271 TMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 330

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G++ D+ + N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG +  
Sbjct: 331 AGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLND 390

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            E  F+ MK  G+ P   ++  L+SA+SK G + K + IL Q+  S + LDT   N +++
Sbjct: 391 AEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLN 450

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            YG+ G   KM E+   M+   C  D  T+  +I  Y   G  +  + L
Sbjct: 451 LYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGL 499



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 37/296 (12%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K   P +A  +F  M  DG KPS + YT L++ YG+ G    A    N+M S   CKP
Sbjct: 242 LMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLS-HKCKP 300

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++ TY+ L+ +   F R  L EK  AE                       + FE+M+ + 
Sbjct: 301 NICTYTALVNA---FAREGLCEK--AE-----------------------EVFEQMQEA- 331

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
                  G  PD+++ N+++ AY  +G      + ++    MG + D  + NIL  +YGR
Sbjct: 332 -------GLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGR 384

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG  +   +V + M++    PT+ ++ +++  F K G++ K E+   +M   G+K ++  
Sbjct: 385 AGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFV 444

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
             S+++ Y + G   K++ +L  +EN     D   +N +I+ YGQAG ++KM  LF
Sbjct: 445 LNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 40/380 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+  G++ Q      +  T   ++  LG C + E+A  +FE M  +GL+P    Y AL+
Sbjct: 290 ALEFLGVV-QGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALL 348

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD-------------- 202
             Y ++GLL +A   +++M+  S   P+  TYS+LI +     R++              
Sbjct: 349 RGYVKAGLLRDAEFVVSEMER-SGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNV 407

Query: 203 -----LIEKILA----------------EMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
                +  +ILA                EM   G+    + YN +ID +GK    +   +
Sbjct: 408 QPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMA 467

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           +F  M+ S G  PD  T N+++  +  +G  ++ E+ + E    G      T NI+  S+
Sbjct: 468 TFDRML-SEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSF 526

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G    +D +++++  M+ +   P  VTY  +I+ +GK+G  +   E    MK  G+KP+S
Sbjct: 527 GDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSS 586

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGELFL 420
             Y +L++AY++ GL  +  S    + +  +       N +I+A+G+   DVE    +  
Sbjct: 587 TMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAF-VVLQ 645

Query: 421 TMKERHCVPDNITFATMIQA 440
            MKE    PD +T+ T+++A
Sbjct: 646 YMKENDLKPDVVTYTTLMKA 665



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 169/345 (48%), Gaps = 11/345 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+SA  ++  +++A + I  M+
Sbjct: 172 YSILIHALGQSEKLYEAFLLSQ---KQNLTPLT--YNALISACARNNDIEKALNLICRMR 226

Query: 177 SVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              D  P D+  YS++I+S  K +R +  +++KI  E+    +E     +N II G+ KA
Sbjct: 227 E--DGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKA 284

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
              ++    F  +V+  G      TL ++I   GN G  E+ E  + E    G++   + 
Sbjct: 285 GDLDK-ALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRA 343

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L + Y +AG+      V+  M++    P   TY+++I+ +G A   E      K+M+
Sbjct: 344 YNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEME 403

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
              ++PN+  +  ++++Y   G   K   +LR++E+S V  D  F+N +I  +G+   ++
Sbjct: 404 ASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLD 463

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                F  M      PD IT+ T++  +   G  + A+ L  +M+
Sbjct: 464 HAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMM 508



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 2/308 (0%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           D L+  V ++  ++  + ++G LD+A   +  ++  S       T   +I       R +
Sbjct: 265 DKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQG-SGLSVKTATLVTVIWGLGNCGRTE 323

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E I  EM   G++     YN ++ GY KA    + E   S M E  G  P+  T + +
Sbjct: 324 EAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEM-ERSGVLPNEQTYSLL 382

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I AYGN+   E       E     V+ +    + +  SY   G + K   V+  M+    
Sbjct: 383 IDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGV 442

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  + YN++I+TFGK   ++     F +M   G++P++IT+ +LV  + KAG   + + 
Sbjct: 443 RPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEE 502

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  ++     +     FN +I+++G     + +  L   M+ +  +P+ +T+ T+I  Y 
Sbjct: 503 LFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYG 562

Query: 443 ALGMTEAA 450
             G  + A
Sbjct: 563 KSGRFDDA 570


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 171/368 (46%), Gaps = 7/368 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           +  W L  ++F L  +   Y     TF  ++ +L K  + ++A      M + G+KP++ 
Sbjct: 203 EAAWVLYAEMFRLRIKSSVY-----TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIV 257

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  +V  Y  SG ++ A + +  MK     +PD +TY  LI    K  R +   KI  E
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTMKR-QKIEPDSFTYGSLISGMCKQGRLEEASKIFEE 316

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G+  SAV YNT+IDG+      + M S++   +   G  P + T NS+I A     
Sbjct: 317 MVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLKKGISPTMSTYNSLIHALFMEQ 375

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             ++ E    E    G+  D  T NIL   Y R     K   + D M      PT  TY 
Sbjct: 376 RTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYT 435

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++    K   +++ ++ FKK+   G+ P++I + +L+  +     +     +L+ ++  
Sbjct: 436 SLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRM 495

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V  D   FN I+  + + G VE+  ELF  MK R   PD+I+F T+I  Y+  G  + A
Sbjct: 496 KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDA 555

Query: 451 QNLENKMI 458
             + N+M+
Sbjct: 556 FRVRNEML 563



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 24/349 (6%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           +FT   ++ G CKQ   E+AS +FE M+  GL+PS  +Y  L+  +   G LD A +  +
Sbjct: 291 SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 174 DM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +M  K +S   P + TY+ LI +     R D  E ++ E+   GI   A+TYN +I+GY 
Sbjct: 351 EMLKKGIS---PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYC 407

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +    ++       M+ SG   P   T  S++        +++ +  + +    GV  D 
Sbjct: 408 RCANAKKAFLLHDEMLASG-IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDA 466

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
              N L   +           ++  M +    P  VT+N +++   + G +E+  E F +
Sbjct: 467 IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISA 405
           MK RG+KP+ I++ +L+S YS+ G I     +  +      +LDT F      +N ++  
Sbjct: 527 MKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE------MLDTGFNPTVLTYNALVQG 580

Query: 406 Y--GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
               Q GD+ +  EL   M  +   PD+ T+ T+I+    + + +  +N
Sbjct: 581 LCKNQEGDLAE--ELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKN 627



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 177/418 (42%), Gaps = 41/418 (9%)

Query: 78  PKPVLEALDEAIKQKKWQLALKIFGLL---RQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           PKP L  L +A+         +IF  L   R +  +++    F  L+       + ++A 
Sbjct: 113 PKPALHLLRQALGGGTTNSIREIFEFLAASRDRLGFKSSI-VFDYLIKSCCDMNRADEAF 171

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
             F  M   G+ P+++   +L+S + +    + A+    +M  +   K  VYT++I+I  
Sbjct: 172 ECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR-IKSSVYTFNIMINV 230

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K  +    +  +  M   G++ + VTYNTI+ GY  + + E  ++  + M +     P
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM-KRQKIEP 289

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D FT  S+IS     G +E+  K + E    G++      N L   +   G  D   +  
Sbjct: 290 DSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYK 349

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 371
           D M K+   PT+ TYN +I         ++ E   K+++ +G+ P++ITY  L++ Y   
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRC 409

Query: 372 --------------------------------SKAGLIMKVDSILRQVENSDVILDTPFF 399
                                           SK   + + D + +++ +  V+ D   F
Sbjct: 410 ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMF 469

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +I  +    +V+   EL   M      PD +TF T++Q +   G  E A+ L ++M
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 1/272 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           +  LIKSC   +R D   +    M   G+  +  T N+++  + K  + E     ++ M 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
                   ++T N MI+     G ++K + +       GVK +I T N +   Y  +G  
Sbjct: 214 RLR-IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +   +++  M+++   P   TY  +I    K G +E+  + F++M  +G++P+++ Y +L
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  +   G +    +   ++    +      +N +I A       ++   +   ++E+  
Sbjct: 333 IDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGI 392

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            PD IT+  +I  Y      + A  L ++M+A
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLA 424



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL+     +      T   +M G C++   E+A  LF+ M   G+KP    +  L+S 
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISG 545

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G + +AF   N+M   +   P V TY+ L++   K    DL E++L EM   G+  
Sbjct: 546 YSRRGDIKDAFRVRNEMLD-TGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 219 SAVTYNTIIDGYGK 232
              TY T+I+G  K
Sbjct: 605 DDTTYFTLIEGIAK 618


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 184/390 (47%), Gaps = 39/390 (10%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
            KKW   + +   + ++  +Q     F  L+   G+  Q ++A  L+  +L     P+ D
Sbjct: 132 NKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTED 191

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKS--------------------------------- 177
            Y  L+ AY  +GL++ A   + +M++                                 
Sbjct: 192 TYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDV 251

Query: 178 -----VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
                   CKP   TY+++I    K  +  +  K+  EM     + +  TY  +++ + +
Sbjct: 252 FQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAR 311

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               E+ E  F  + E G   PD++  N+++ +Y  +G      + ++    MG + D  
Sbjct: 312 EGLCEKAEEIFEQLQEDG-LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRA 370

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           + NI+  +YGRAG++    +V + M++    PT+ ++ +++  + KA  + K E   K+M
Sbjct: 371 SYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 430

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G++P++    S+++ Y + G   K++ IL ++EN     D   +N +I+ YG+AG +
Sbjct: 431 SENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFL 490

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYN 442
           E++ ELF+ +KE++  PD +T+ + I AY+
Sbjct: 491 ERIEELFVELKEKNFRPDVVTWTSRIGAYS 520



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 165/320 (51%), Gaps = 6/320 (1%)

Query: 107 QQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           Q+  + RC    +T+  ++ + GK  +   +  L+  M S   KP++  YTALV+A+ + 
Sbjct: 253 QRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFARE 312

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           GL ++A      ++     +PDVY Y+ L++S ++        +I + M ++G E    +
Sbjct: 313 GLCEKAEEIFEQLQE-DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRAS 371

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN ++D YG+A    + E+ F  M +  G  P + +   ++SAY  + ++ K E    E 
Sbjct: 372 YNIMVDAYGRAGLHSDAEAVFEEM-KRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 430

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
           +  GV+ D   LN +   YGR G + KM  ++  M+       + TYNI+I  +GKAG +
Sbjct: 431 SENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFL 490

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E++EE F ++K +  +P+ +T+ S + AYS+  L +K   +  ++ +S    D      +
Sbjct: 491 ERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVL 550

Query: 403 ISAYGQAGDVEKMGELFLTM 422
           +SA      VE++  +  TM
Sbjct: 551 LSACSSEEQVEQVTSVLRTM 570


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 8/327 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K  +   ASL+ E M+  G  P+V  Y  L++ + + G +DEA    N M
Sbjct: 238 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S C PDV+TY+ILI    K  R     K+L EM   G E + +TYNT++D   K+ K
Sbjct: 298 LENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGK 356

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQ 292
           + +   + + M+    C P  FT N MI  +   G   +++  Y  F LM   G   DI 
Sbjct: 357 YID-AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVG---QLDLAYELFQLMTDRGCLPDIY 412

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T NI+     RA   D  R +++ M +    P VVTYN ++    KA  +++  E ++ +
Sbjct: 413 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 472

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           ++ G   + +T  +L+    K+  +   + +LR++E +    D   +  +I  + +A  +
Sbjct: 473 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 532

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQ 439
           +K    F  M ++ CVP  IT++ +I 
Sbjct: 533 DKSLAFFSEMLDKGCVPTVITYSIVID 559



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 170/374 (45%), Gaps = 14/374 (3%)

Query: 89  IKQKKWQLALKIF-----GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           +++KK Q A  +F     GL            T++ L+    K +  +QA  L + M   
Sbjct: 143 VRKKKAQEAYDLFKNHRCGLCSPDSI------TYSTLINGFCKARDFQQAYRLLDEMEKR 196

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ P   VY  ++     +G +D A     DM+   +C P V TY+IL+ +  K  R   
Sbjct: 197 GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR--NCAPSVITYTILVDALCKSARISD 254

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              IL +M   G   + VTYNT+I+G+ K    +E    F+ M+E+  C PD+FT N +I
Sbjct: 255 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILI 313

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             Y      +   K   E    G + +  T N L  S  ++G Y    ++   M +R   
Sbjct: 314 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 373

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P+  T+N++I+ F K G ++   E F+ M  RG  P+  TY  ++S   +A  I     +
Sbjct: 374 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 433

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L ++  +    D   +N I+S   +A  V++  E++  ++      D +T +T+I     
Sbjct: 434 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 493

Query: 444 LGMTEAAQNLENKM 457
               + A+ L  +M
Sbjct: 494 SRRLDDAEKLLREM 507



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 162/361 (44%), Gaps = 11/361 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D   KQ++ Q   K+      Q+  +  C+    T+  LM  L K  +   A  L ++M
Sbjct: 313 IDGYCKQERPQDGAKLL-----QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 367

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           L    KPS   +  ++  + + G LD A+     M     C PD+YTY+I+I    + +R
Sbjct: 368 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD-RGCLPDIYTYNIMISGACRANR 426

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D   ++L  M+  G     VTYN+I+ G  KA + +E    +  +  +GG   D+ T +
Sbjct: 427 IDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL-RNGGYFLDVVTCS 485

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I     S  ++  EK   E    G   D+    IL   + +A   DK  +    M  +
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              PTV+TY+IVI+   K+  +       K M  RG+ P++I Y S++    K+    + 
Sbjct: 546 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             + + ++ +        +N ++    +   +++   L   M+   C+PD +T+ ++   
Sbjct: 606 YELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDG 665

Query: 441 Y 441
           +
Sbjct: 666 F 666



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 152/327 (46%), Gaps = 4/327 (1%)

Query: 115 QTFTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             FT  +++ G CKQ  P+  + L + M+  G +P+   Y  L+ +  +SG   +AF+ +
Sbjct: 305 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN-L 363

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             M    DCKP  +T++++I    K  + DL  ++   M+  G      TYN +I G  +
Sbjct: 364 AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACR 423

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A + ++       M E+G C PD+ T NS++S    +  +++  + Y      G   D+ 
Sbjct: 424 ANRIDDARQLLERMTEAG-CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVV 482

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + L     ++   D    ++  M++    P VV Y I+I  F KA  ++K   +F +M
Sbjct: 483 TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM 542

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P  ITY  ++    K+  +     +L+ +    V  D   +  +I    ++   
Sbjct: 543 LDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSY 602

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQ 439
           ++  EL+  MK+  C P  +T+  ++ 
Sbjct: 603 DEAYELYKLMKQTGCAPTVVTYNVLVD 629



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 132/314 (42%), Gaps = 3/314 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G K S      L+SA+ +     EA+    + +    C PD  TYS LI    K   F  
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHR-CGLCSPDSITYSTLINGFCKARDFQQ 185

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++L EM   GI      YNTII G     + +     +  M  +  C P + T   ++
Sbjct: 186 AYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN--CAPSVITYTILV 243

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A   S  I        +    G   ++ T N L   + + G  D+   + + M +    
Sbjct: 244 DALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCS 303

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V TYNI+I+ + K    +   +  ++M   G +PN ITY +L+ +  K+G  +   ++
Sbjct: 304 PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNL 363

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            + +   D       FN +I  + + G ++   ELF  M +R C+PD  T+  MI     
Sbjct: 364 AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACR 423

Query: 444 LGMTEAAQNLENKM 457
               + A+ L  +M
Sbjct: 424 ANRIDDARQLLERM 437



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 7/293 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLS 142
           +D   K  +  LA ++F L+  +         +T  +++ G C+  + + A  L E M  
Sbjct: 383 IDMFCKVGQLDLAYELFQLMTDRGCLP---DIYTYNIMISGACRANRIDDARQLLERMTE 439

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            G  P V  Y ++VS   ++  +DEA+     +++      DV T S LI    K  R D
Sbjct: 440 AGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRN-GGYFLDVVTCSTLIDGLCKSRRLD 498

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             EK+L EM   G     V Y  +I G+ KA + ++  + FS M++ G C P + T + +
Sbjct: 499 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG-CVPTVITYSIV 557

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I     S  +             GV  D      +     ++  YD+   +   M++   
Sbjct: 558 IDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGC 617

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            PTVVTYN++++   K   +++     + M+  G  P+++TY S+   + K+ 
Sbjct: 618 APTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSA 670



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 2/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G + S  T N ++  + + KK +E    F      G C PD  T +++I+ +  + + ++
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNH-RCGLCSPDSITYSTLINGFCKARDFQQ 185

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             +  +E    G+       N + K     G  D        MQ R   P+V+TY I+++
Sbjct: 186 AYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RNCAPSVITYTILVD 244

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              K+  I       + M   G  PN +TY +L++ + K G + +   +  Q+  +    
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSP 304

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   +N +I  Y +    +   +L   M +  C P+ IT+ T++ +    G    A NL 
Sbjct: 305 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLA 364

Query: 455 NKMI 458
             M+
Sbjct: 365 QMML 368



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 40/160 (25%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G CK    ++A  L+++M   G  P+V  Y  LV    +   LDEA   +  M+S  
Sbjct: 592 VIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMES-D 650

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C PD                                     TYN++ DG+ K+ + ++ 
Sbjct: 651 GCLPDTV-----------------------------------TYNSVFDGFWKSAEHDKA 675

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 278
              F AM +S GC P  F  + +++       +++ ME W
Sbjct: 676 FRLFQAM-KSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW 714


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 176/409 (43%), Gaps = 48/409 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +   + +    +     ++ ++  L K  +   A  L+  M   G+ P +  Y  ++
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             +  SG   EA   + +M       P+V TYS LI +  K  +F   E++  EM   GI
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLE-RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGI 350

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + +TYN++IDG+ K  + +  E  F  M  + GC PD+FT N++I  Y  +  I+   
Sbjct: 351 IPNTITYNSMIDGFCKQNRLDAAEHMFYVMA-TKGCSPDVFTFNTLIDGYCGAKRIDDGT 409

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAG------------------------------- 305
           +  +E    G+ AD  T N L   +   G                               
Sbjct: 410 ELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 469

Query: 306 -----------MYDKM-RSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFK 350
                      M+  M +S MD    R F    P V TYNI+I      G   + EE +K
Sbjct: 470 CDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYK 529

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M HRG+ PN+ITY S+++   K   + +   +   + +     D   FN ++S Y +AG
Sbjct: 530 EMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAG 589

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            V+   ELF  M  R  V D IT+ T+I  +  +G    A ++  +MI+
Sbjct: 590 RVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMIS 638



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 7/362 (1%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q  C   +F  L+     C +   A   F  +   G +P V  ++ L+ 
Sbjct: 96  VISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLH 155

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA    + M     C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 156 GLCVEDRVSEALDLFHQM-----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 210

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + +TY TI+DG  K        +    M E     P++   +++I      G       
Sbjct: 211 PNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHN 270

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            Y E    G+  D+ T N +   +  +G + + + ++  M +R   P VVTY+ +I  + 
Sbjct: 271 LYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYV 330

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K     + EE + +M  RG+ PN+ITY S++  + K   +   + +   +       D  
Sbjct: 331 KERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVF 390

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I  Y  A  ++   EL   M E   V D  T+ T+I  +  +G   AA +L  +M
Sbjct: 391 TFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQM 450

Query: 458 IA 459
           I+
Sbjct: 451 IS 452



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 169/371 (45%), Gaps = 23/371 (6%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           K   AL  FG +  +  +Q    TF+ L+  L    +  +A  LF  M     +P+V  +
Sbjct: 127 KLPFALSTFGKI-TKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMC----RPNVVTF 181

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKF----HRFDLIEKI 207
           T L++   + G + EA + ++ M  V D  +P+  TY  ++    K        +L+ K 
Sbjct: 182 TTLMNGLCREGRVVEAVALLDRM--VEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRK- 238

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           + EMS+  I+ + V Y+ IIDG  K  +  +  + ++ M E G   PD+FT N MI  + 
Sbjct: 239 MEEMSH--IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKG-IFPDLFTYNCMIDGFC 295

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           +SG   + ++   E     +  ++ T + L  +Y +   + +   + D M  R   P  +
Sbjct: 296 SSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTI 355

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TYN +I+ F K   ++  E  F  M  +G  P+  T+ +L+  Y  A  I     +L ++
Sbjct: 356 TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY------ 441
             + ++ DT  +N +I  +   GD+    +L   M      PD +T  T++         
Sbjct: 416 TETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 475

Query: 442 -NALGMTEAAQ 451
            +AL M +A Q
Sbjct: 476 KDALEMFKAMQ 486



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 153/358 (42%), Gaps = 49/358 (13%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D      +W  A ++   + +++       T++ L+    K ++  +A  L++ ML  G
Sbjct: 291 IDGFCSSGRWSEAQRLLQEMLERK-INPNVVTYSALINAYVKERKFFEAEELYDEMLPRG 349

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+   Y +++  + +   LD A      M +   C PDV+T++ LI       R D  
Sbjct: 350 IIPNTITYNSMIDGFCKQNRLDAAEHMFYVM-ATKGCSPDVFTFNTLIDGYCGAKRIDDG 408

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L EM+  G+     TYNT+I G+               M+ SG C PDI T N+++ 
Sbjct: 409 TELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVC-PDIVTCNTLLD 467

Query: 265 AYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKSYGRAGMY------ 307
              ++G ++        M+K   + +      GV+ D+QT NIL       G +      
Sbjct: 468 GLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEEL 527

Query: 308 -----------------------------DKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                                        D+   + D M  + F P VVT+N ++  + K
Sbjct: 528 YKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCK 587

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           AG ++   E F +M  RG+  ++ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 588 AGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDT 645



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 122/288 (42%), Gaps = 7/288 (2%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  ++ L+    +  R DL+  +  +M   
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVR-SRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERK 106

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++N +I  +    K     S+F  + +  G  PD+ T ++++        + +
Sbjct: 107 QIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKL-GFQPDVVTFSTLLHGLCVEDRVSE 165

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +++      + ++ T   L     R G   +  +++D M +    P  +TY  +++
Sbjct: 166 ALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 221

Query: 335 TFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
              K G         +KM+    +KPN + Y +++    K G      ++  +++   + 
Sbjct: 222 GMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIF 281

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            D   +NC+I  +  +G   +   L   M ER   P+ +T++ +I AY
Sbjct: 282 PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAY 329



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 18/181 (9%)

Query: 281 EFN-LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +FN LMGV   ++  +++   Y +             M+++     V ++NI+I+ F   
Sbjct: 79  DFNKLMGVVVRMERPDLVISLYQK-------------MERKQIPCDVYSFNILIKCFCSC 125

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             +      F K+   G +P+ +T+ +L+        + +   +  Q+   +V+     F
Sbjct: 126 SKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVT----F 181

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             +++   + G V +   L   M E    P+ IT+ T++     +G T +A NL  KM  
Sbjct: 182 TTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEE 241

Query: 460 M 460
           M
Sbjct: 242 M 242


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 174/348 (50%), Gaps = 4/348 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+   G C    +A  + + M  +G+ P +  +  ++SAY       +A S    M
Sbjct: 7   TFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELM 66

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKA 233
           K  ++ +PD  T +I+I    K  ++    +I + M     EC    VT+ +II  Y   
Sbjct: 67  KG-TNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVR 125

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + E+ ++ FS M+ + G  P+I + N++ISAY + G  ++    ++E    G   D+ +
Sbjct: 126 GQIEDCKAVFSTML-AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVS 184

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L  ++GR+    + R V D M++    P +V+YN +++ +G  G++ +  +  ++M+
Sbjct: 185 YTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREME 244

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+ PN ++ C+L++A  + G  + +DS+L   E   + L+T   N  I +Y   G+ E
Sbjct: 245 QDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYE 304

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           K   L+ +M+ +   PD++TF  +I     +   E A     +M+ ++
Sbjct: 305 KAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLR 352



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 179/358 (50%), Gaps = 9/358 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           IK K++  A++IF  +R+++   + C+    TFT ++ +     Q E    +F  ML++G
Sbjct: 86  IKVKQYGQAIEIFSSMREKR---SECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEG 142

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +KP++  Y AL+SAY   G+  EAFS  ++MK    C PDV +Y+ LI +  +  +    
Sbjct: 143 IKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC-PDVVSYTSLISTFGRSQQPARA 201

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M     + + V+YN ++D YG      +       M E  G HP++ ++ ++++
Sbjct: 202 REVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM-EQDGIHPNVVSICTLLA 260

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A G  G    ++   +   L G+  +    N    SY   G Y+K  ++   M+ +   P
Sbjct: 261 ACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKP 320

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VT+ I+I    +    E+   +FK+M    +  +S  Y S++ AYSK G ++K +S+ 
Sbjct: 321 DSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLF 380

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             ++ S    D   +  +I+AY  +   EK+  L+  M+  +   D+I  + +++A+N
Sbjct: 381 NSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFN 438



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 145/339 (42%), Gaps = 37/339 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T L+   G+ +QP +A  +F++M  +  KP++  Y AL+ AYG +G L +A   + +M
Sbjct: 184 SYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 243

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P+V +   L+ +C +F +   I+ +L+     GI  + +  N+ I  Y    +
Sbjct: 244 EQ-DGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE 302

Query: 236 FEEMESSFSAMVESGGCHPDIFTL-----------------------------------N 260
           +E+  + + +M E+    PD  T                                    +
Sbjct: 303 YEKAINLYRSM-ENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYS 361

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           SMI AY   G + K E  +N     G   D+ T   +  +Y  + M++K+ ++   M+  
Sbjct: 362 SMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 421

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                 +  + +++ F K      +    + MK +G+  N   +  ++SA S      K 
Sbjct: 422 NIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKA 481

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
             ++  +E S  ++     N ++   G++G  E M +LF
Sbjct: 482 TDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLF 520



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 37/241 (15%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P   T N++I+A G+ GN  +  +   +    GV  D+ T NI+  +Y     Y K  S 
Sbjct: 3   PSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSY 62

Query: 314 MDFMQKRFFFPTVVTYNIVIET------FGKA---------------------------- 339
            + M+     P   T NIVI        +G+A                            
Sbjct: 63  FELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLY 122

Query: 340 ---GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G IE  +  F  M   G+KPN ++Y +L+SAY+  G+  +  S+  +++ S    D 
Sbjct: 123 SVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV 182

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +  +IS +G++    +  E+F  MK   C P+ +++  ++ AY + G    A ++  +
Sbjct: 183 VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILRE 242

Query: 457 M 457
           M
Sbjct: 243 M 243



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 156/399 (39%), Gaps = 75/399 (18%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++F ++++ +  +    ++  LM   G      QA  +   M  DG+ P+V     L+
Sbjct: 201 AREVFDMMKRNKC-KPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL 259

Query: 157 SA---YGQSGLLDEAFST-----------------------------INDMKSVSD--CK 182
           +A   +GQ   +D   S                              IN  +S+ +   K
Sbjct: 260 AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTK 319

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD  T++ILI  C +  +++       EM  L I  S+  Y+++I  Y K  +  + ES 
Sbjct: 320 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 379

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+++ +  GC PD+ T  +MI+AY  S   EK+   Y E     ++ D    + L K++ 
Sbjct: 380 FNSL-KGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFN 438

Query: 303 RAGM-----------------------------------YDKMRSVMDFMQKRFFFPTVV 327
           +                                      + K   +++ M+  F   ++ 
Sbjct: 439 KGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLG 498

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T N +++  GK+G  E M + F +    G   N  TY  L+     AG   K   +L+ +
Sbjct: 499 TINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQWM 558

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
            ++ +      +N I+      GD E        +KER+
Sbjct: 559 NDAGIQPSHAMYNNILFFAQHCGDAEYAA----VIKERN 593


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 184/390 (47%), Gaps = 39/390 (10%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
            KKW   + +   + ++  +Q     F  L+   G+  Q ++A  L+  +L     P+ D
Sbjct: 154 NKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTED 213

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKS--------------------------------- 177
            Y  L+ AY  +GL++ A   + +M++                                 
Sbjct: 214 TYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDV 273

Query: 178 -----VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
                   CKP   TY+++I    K  +  +  K+  EM     + +  TY  +++ + +
Sbjct: 274 FQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAR 333

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               E+ E  F  + E G   PD++  N+++ +Y  +G      + ++    MG + D  
Sbjct: 334 EGLCEKAEEIFEQLQEDG-LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRA 392

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           + NI+  +YGRAG++    +V + M++    PT+ ++ +++  + KA  + K E   K+M
Sbjct: 393 SYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 452

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G++P++    S+++ Y + G   K++ IL ++EN     D   +N +I+ YG+AG +
Sbjct: 453 SENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFL 512

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYN 442
           E++ ELF+ +KE++  PD +T+ + I AY+
Sbjct: 513 ERIEELFVELKEKNFRPDVVTWTSRIGAYS 542



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 165/320 (51%), Gaps = 6/320 (1%)

Query: 107 QQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           Q+  + RC    +T+  ++ + GK  +   +  L+  M S   KP++  YTALV+A+ + 
Sbjct: 275 QRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFARE 334

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           GL ++A      ++     +PDVY Y+ L++S ++        +I + M ++G E    +
Sbjct: 335 GLCEKAEEIFEQLQE-DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRAS 393

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN ++D YG+A    + E+ F  M +  G  P + +   ++SAY  + ++ K E    E 
Sbjct: 394 YNIMVDAYGRAGLHSDAEAVFEEM-KRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 452

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
           +  GV+ D   LN +   YGR G + KM  ++  M+       + TYNI+I  +GKAG +
Sbjct: 453 SENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFL 512

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E++EE F ++K +  +P+ +T+ S + AYS+  L +K   +  ++ +S    D      +
Sbjct: 513 ERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVL 572

Query: 403 ISAYGQAGDVEKMGELFLTM 422
           +SA      VE++  +  TM
Sbjct: 573 LSACSSEEQVEQVTSVLRTM 592


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 2/341 (0%)

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
           R + W      T+  L+  L +C++ ++A  L + M+     P   VY  L++   + G 
Sbjct: 83  RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGK 142

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           +D A + +  M   S C PDV TY+ LI  C + +  D   K++ +M   G+    V YN
Sbjct: 143 IDAARNVLKMMLERS-CVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYN 201

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +++G  K  + EE+      MVE+G   PD F+ N++++    SG  E+  K   +   
Sbjct: 202 ALLNGLCKQNQLEEVSKLLEEMVEAGR-EPDTFSYNTVVACLCESGKYEEAGKILEKMIE 260

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                D+ T N L   + +    D+   +++ M  R   PTV+TY  +I  F +A  +  
Sbjct: 261 KKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLAD 320

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                + M   G+ P+ +TY  L+    KAG + +   +L  +   D   D   ++ +++
Sbjct: 321 AYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVN 380

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
              + G V+    L   M ER C P+ +TF TMI  +   G
Sbjct: 381 GLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAG 421



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 14/338 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  +   A  + E M   G+ P +  Y  L+    ++G L+EA   +  M
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVM 363

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               DC PDV TYSIL+    K  + D    +L  M   G + + VT+NT+IDG+ KA K
Sbjct: 364 VE-KDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK 422

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       M E   C PD+ T +++I  Y       K  +  + F ++G+  D  + +
Sbjct: 423 VDEGHKVLELMKEVS-CTPDVVTYSTLIDGYC------KANRMQDAFAILGISPDKASYS 475

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK---M 352
            + +     G  ++ + VMD M K+   PT   Y ++I   G    +E+ +E  K    M
Sbjct: 476 SMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALII---GGLCDVERGDEALKMLQVM 532

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             RG +PN  TY  L++   K   +    ++L  +     + D   +  +I  + +   +
Sbjct: 533 SERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKM 592

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +   + F TM++  C PD + +  +I  +   G  E A
Sbjct: 593 DAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKA 630



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 159/342 (46%), Gaps = 8/342 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+V   +    ++A  L E M   GL P    Y AL++   +   L+E    + +M
Sbjct: 164 TYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEM 223

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 +PD ++Y+ ++    +  +++   KIL +M         VTYN+++DG+ K  K
Sbjct: 224 VEAGR-EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSK 282

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E E     MV    C P + T  ++I  +  +  +    +   +    G+  D+ T N
Sbjct: 283 MDEAERLLEDMV-GRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYN 341

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +AG  ++   +++ M ++   P VVTY+I++    K G ++      + M  R
Sbjct: 342 CLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER 401

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G +PN +T+ +++  + KAG + +   +L  ++      D   ++ +I  Y +A    +M
Sbjct: 402 GCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKA---NRM 458

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            + F  +      PD  ++++M++   + G  E AQ + + M
Sbjct: 459 QDAFAILGIS---PDKASYSSMLEGLCSTGKVEEAQEVMDLM 497



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 159/396 (40%), Gaps = 66/396 (16%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG------------------------- 163
           +P +    F    SD  KPS   Y AL++ + ++G                         
Sbjct: 4   RPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHN 63

Query: 164 LLDEAFSTINDM-KSVSD------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            + +A+  I D+ +++S       C P  +TY ILI    +  R D   ++L EM     
Sbjct: 64  TILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDC 123

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES--------------GGCH--------- 253
              A  YN +I G  K  K +   +    M+E               G C          
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 254 -----------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                      PD    N++++       +E++ K   E    G + D  + N +     
Sbjct: 184 LMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLC 243

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            +G Y++   +++ M ++   P VVTYN +++ F K   +++ E   + M  R   P  I
Sbjct: 244 ESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVI 303

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L+  +S+A  +     ++  +  + +  D   +NC++    +AG +E+  EL   M
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVM 363

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            E+ C PD +T++ ++     LG  + A+ L   M+
Sbjct: 364 VEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 124/280 (44%), Gaps = 3/280 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           KP   TY  LI   ++     ++ +I  EM         +T+NTI+  Y +    +   S
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F   +    C P  FT   +I        I++  +  +E        D    N L    
Sbjct: 81  HFRGKM---WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGL 137

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G  D  R+V+  M +R   P V+TY  +I    +   +++  +  +KMK  G+ P++
Sbjct: 138 CKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDT 197

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           + Y +L++   K   + +V  +L ++  +    DT  +N +++   ++G  E+ G++   
Sbjct: 198 VAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEK 257

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           M E+ C PD +T+ +++  +  +   + A+ L   M+  +
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 35/254 (13%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++  Q    TF  ++    K  + ++   + E+M      P V  Y+ L+  Y ++  + 
Sbjct: 400 ERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQ 459

Query: 167 EAFSTIN----------------------------DMKSVSDCKPDVYTYSILIKSCTKF 198
           +AF+ +                             D+ +   C P    Y+++I      
Sbjct: 460 DAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDV 519

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
            R D   K+L  MS  G E +  TY+ +I+G  K K+ E+  +    M+E  GC PD+ T
Sbjct: 520 ERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEK-GCVPDVAT 578

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             S+I  +     I KM+  Y  F  M   G + D    NIL   + ++G  +K   VM 
Sbjct: 579 YTSLIDGF---CKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQ 635

Query: 316 FMQKRFFFPTVVTY 329
            M ++   P   TY
Sbjct: 636 LMLEKGCNPDAATY 649


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 159/343 (46%), Gaps = 14/343 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY--------TALVSAYGQSGLLDE 167
               L+  L K     +A  LF+ +   GL  S D+Y        T ++S  G    L  
Sbjct: 156 ALAALLKELNKSGHVRRAQELFDWL--RGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRR 213

Query: 168 AFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           A   + +M+S    C  +V+TYS L+  C K +  DL   +  +M   G   + VTYNT+
Sbjct: 214 ALELVAEMRSRGIQC--NVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTL 271

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ID YGK   +EE      A+ E  G  P+I T N++I A   SG  ++  + Y      G
Sbjct: 272 IDVYGKTGAWEEAIRVLDAL-ERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAG 330

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            +    T   L  +YG+ G  D+   +   M +R     V+TY+ +I    KAG  E   
Sbjct: 331 AQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELAL 390

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M   G +PN +TY SL++A ++     K   +  Q+++     D   F  +I+AY
Sbjct: 391 ELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAY 450

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            +AG   +    F  MK  +C PD++ + T++ A    G+  A
Sbjct: 451 DRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLVWA 493



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 144/287 (50%), Gaps = 3/287 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           Q++ + AL++   +R +   Q    T++ LM +  K  + + A  ++  ML++G  P++ 
Sbjct: 208 QQQLRRALELVAEMRSRG-IQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLV 266

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L+  YG++G  +EA   ++ ++      P++ TY+ +I +C    +     +I   
Sbjct: 267 TYNTLIDVYGKTGAWEEAIRVLDALER-QGIDPEIRTYNTVIIACNMSGQAQEALRIYER 325

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G + +A TY  +I  YGK  + +     F  MV   GC  ++ T +S+ISA   +G
Sbjct: 326 MLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRR-GCERNVITYSSLISACEKAG 384

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             E   + + E +  G + ++ T N L  +  +   ++K + + + MQ R   P  VT+ 
Sbjct: 385 RWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFG 444

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +I  + +AGH  +    F++MK    +P+S+ Y ++V A  K GL+
Sbjct: 445 GLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLV 491



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 3/217 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K   W+ A+++   L ++Q      +T+  +++      Q ++A  ++E ML+ G +P+ 
Sbjct: 277 KTGAWEEAIRVLDAL-ERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTA 335

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YTAL+SAYG++G LD A     DM     C+ +V TYS LI +C K  R++L  ++  
Sbjct: 336 TTYTALISAYGKNGQLDRALQIFQDMVR-RGCERNVITYSSLISACEKAGRWELALELFR 394

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G   + VTYN++I    +  ++E+ +  F  M +  GC PD  T   +I+AY  +
Sbjct: 395 EMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM-QHRGCKPDAVTFGGLIAAYDRA 453

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           G+  +    + +      + D    N +  +  + G+
Sbjct: 454 GHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGL 490



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 90/210 (42%), Gaps = 6/210 (2%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL-NILTKS--YGRAGMYDKMR 311
           D   L +++     SG++ + ++ ++    +    D+  L N +T +    + G   ++R
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 312 SVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
             ++    M+ R     V TY+ ++    K   ++   + +++M   G  PN +TY +L+
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             Y K G   +   +L  +E   +  +   +N +I A   +G  ++   ++  M      
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQ 332

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMI 458
           P   T+  +I AY   G  + A  +   M+
Sbjct: 333 PTATTYTALISAYGKNGQLDRALQIFQDMV 362



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 6/176 (3%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQ----KRFFFP--TVVTYNIVIETFGKAGHIE 343
           D   L  L K   ++G   + + + D+++        +P    +TY  +I   G    + 
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +  E   +M+ RG++ N  TY +L++   K   +     + RQ+       +   +N +I
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             YG+ G  E+   +   ++ +   P+  T+ T+I A N  G  + A  +  +M+A
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLA 328


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 2/326 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E  +++ E MLS G  P +  Y  L+    + G L  A   +N+M+ +  C+P+V TY+I
Sbjct: 389 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTI 447

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K  R +    +L EMS  G+  +AV YN +I    K +K ++  + F  M  S 
Sbjct: 448 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSK 506

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC PDIFT NS+I         E+    Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 507 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 566

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M  R      +TYN +I+   +AG+IEK    F+ M  +G+ PN+I+   L++ 
Sbjct: 567 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 626

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G I      LR + +  +  D   +N +I+   + G  ++   LF  ++     PD
Sbjct: 627 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686

Query: 431 NITFATMIQAYNALGMTEAAQNLENK 456
            IT+ T+I  +   GM + A  L ++
Sbjct: 687 AITYNTLISWHCKEGMFDDAHLLLSR 712



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 2/298 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K  + E+A  + + M   GL  +   Y  L+SA  +   + +A +   DM
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 503

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   CKPD++T++ LI    K ++F+    +  +M   G+  + +TYNT+I  + +   
Sbjct: 504 SS-KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 562

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     + M+  G C  D  T N +I A   +GNIEK    + +    G+  +  + N
Sbjct: 563 MQEALKLVNDMLFRG-CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCN 621

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     R G        +  M  R   P +VTYN +I    K G  ++    F K++  
Sbjct: 622 ILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE 681

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           G+ P++ITY +L+S + K G+      +L +  +S  I +   +  ++S + + GD E
Sbjct: 682 GICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 157/375 (41%), Gaps = 32/375 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  +M  L    + + A  L + M   G  P+  VY  L+ A  + G ++E    + +M
Sbjct: 237 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEM 296

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY------------ 223
             +  C PDV T++  I    K  R     K++  M   G   ++ TY            
Sbjct: 297 LLMG-CIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK 355

Query: 224 -------------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                              NT+I+GY    + +E ++     + S GC PDIFT N++I 
Sbjct: 356 VDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 415

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G +    +  NE  + G + ++ T  IL   + + G  ++ R+V+D M  +    
Sbjct: 416 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 475

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V YN +I    K   ++     F  M  +G KP+  T+ SL+    K     +   + 
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           + +    VI +T  +N +I A+ + G +++  +L   M  R C  D+IT+  +I+A    
Sbjct: 536 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 595

Query: 445 GMTEAAQNLENKMIA 459
           G  E    L   M++
Sbjct: 596 GNIEKGLALFEDMMS 610



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 164/429 (38%), Gaps = 68/429 (15%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++++F     Q+ Y      +  L+  LG   + +    L   M  +G+     ++  ++
Sbjct: 112 SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIM 171

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCK---------------------------------- 182
             YG++GL  +A   + DM+ V  C+                                  
Sbjct: 172 KHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGI 231

Query: 183 -PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P VYT+ +++K+    +  D    +L +M+  G   +A+ Y T+I    K  +  E+  
Sbjct: 232 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLK 291

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
               M+   GC PD+ T N  I        I +  K  +   L G   +  T  +L    
Sbjct: 292 LLEEMLLM-GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGL 350

Query: 302 GRAGMYDKMRSVMD----------------------------FMQKRFFF----PTVVTY 329
            R G  D+ R +++                             M +        P + TY
Sbjct: 351 CRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 410

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I    K G++    E   +M+ +G +PN ITY  L+  + K G + +  ++L ++  
Sbjct: 411 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 470

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             + L+   +NC+ISA  +   V+    +F  M  + C PD  TF ++I     +   E 
Sbjct: 471 KGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEE 530

Query: 450 AQNLENKMI 458
           A  L   M+
Sbjct: 531 ALGLYQDML 539


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYT 153
           + +K  GLL  +  Y          +++ G CK    ++A+ + E+M  + L P V  Y 
Sbjct: 267 MDMKSRGLLPNRNTYN---------ILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            L++     G ++EAF   ++M+++    PDV +Y+ LI  C ++ +     K+L EMS 
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEMENLK-LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSE 376

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G++ +AVT+N ++  Y K  K ++  ++ + M ESG   PD  T N++I+ Y  +GN+ 
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG-FSPDCVTYNTLINGYCKAGNMG 435

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           +  +  +E     +K D  TLN + ++  R    ++   ++   +KR +F   V+Y  +I
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
             + K G++++  + + +MK + + P+++TY  ++    + G   +  S L ++  S ++
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N I+  Y + GDVEK  +    M E    PD  T   +++     GM E A  L
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKL 615

Query: 454 ENKMIA 459
            N  ++
Sbjct: 616 FNTWVS 621



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 46/335 (13%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFDL 203
           PS  +    + AY QSG    AF     MK +   +P++ T + L+ S  ++   H    
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLR-LRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             +   +   LGI  +  T+N +I GY    KF++     + M +   C PD  T N+++
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYN-CSPDNVTYNTIL 250

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A    G +        +    G+  +  T NIL   Y + G   +  +V++ M +    
Sbjct: 251 DALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 324 PTVVTYNIVIETFGKAGHIE--------------------------------KMEEYFK- 350
           P V TYN++I      G IE                                K+ E FK 
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 351 --KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M  +G+KPN++T+  +V  Y K G +    + + ++E S    D   +N +I+ Y +
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 409 AGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 440
           AG+   MGE F TM E   ++   D++T  T+++ 
Sbjct: 431 AGN---MGEAFRTMDEMGRKNMKMDSVTLNTILRT 462



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 147/342 (42%), Gaps = 4/342 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVD 150
           +W    + F LL +      +    T  +++   CK+   + AS     M   G  P   
Sbjct: 360 EWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCV 419

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L++ Y ++G + EAF T+++M    + K D  T + ++++  +  + +   K+L+ 
Sbjct: 420 TYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKMDSVTLNTILRTLCREKKLEEAYKLLSS 478

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
               G     V+Y T+I GY K    +     +  M E     P   T N +I      G
Sbjct: 479 ARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE-IIPSTVTYNCIIGGLCQCG 537

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             E+     NE    G+  D  T N +   Y R G  +K     + M +  F P V T N
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I++      G +EK  + F     +G   +++TY +L+++  K G +    ++L ++E  
Sbjct: 598 ILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++  D   +N II+A   +G + +  E    M E+  +P  +
Sbjct: 658 ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQV 699



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 11/215 (5%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P    L++ I AY  SG      + + +   + ++ ++ T N L  S  R   Y    SV
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR---YPSSHSV 189

Query: 314 MDFMQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             F ++ F         P V T+NIVI  +      +   E+   M      P+++TY +
Sbjct: 190 -SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++ A  K G +     +L  +++  ++ +   +N ++  Y + G +++   +   M + +
Sbjct: 249 ILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +PD  T+  +I      G  E A  L ++M  +K
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 168/352 (47%), Gaps = 3/352 (0%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K W++AL +F  L+ +Q +     T+  ++ +L + +Q E +  + E M++ G++P    
Sbjct: 21  KSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNIT 80

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ L+S   +    D A +  + M   + C PD  TYS +I    K  ++D    +   +
Sbjct: 81  YSTLISCANRCNYQDAAMAWFDRMHD-AQCVPDAVTYSTMIDVYGKVGKYDEAVALYESV 139

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G +   VTY T++  +G+A       S F  M +  G  P     N MIS  G +G 
Sbjct: 140 KKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEM-KGSGIQPGSVVYNIMISCLGRAGR 198

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +    K + E    GVK +  TL+ + + Y R+G   +   +   M++      +V YN 
Sbjct: 199 MGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDLACDIIV-YNA 257

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           VI+   +AG + + E+Y ++M   G +PN  TY +++S Y+K G+ ++   +  Q+  + 
Sbjct: 258 VIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAG 317

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              D   +  ++  YG A D EK+ E+   M   +C PD   +  ++   +A
Sbjct: 318 YQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLLDA 369



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 2/291 (0%)

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A S    +++  +   ++YTY++++K   +  +++L ++I  +M   GI    +TY+T+I
Sbjct: 26  ALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLI 85

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
               +    +   + F  M     C PD  T ++MI  YG  G  ++    Y      G 
Sbjct: 86  SCANRCNYQDAAMAWFDRM-HDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGW 144

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           K D  T   + + +GRAG      S+ D M+     P  V YNI+I   G+AG +    +
Sbjct: 145 KPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALK 204

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F++MK  G+KPN++T  +++  YS++G +M+   I   +   D+  D   +N +I    
Sbjct: 205 VFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQ-DLACDIIVYNAVIKMCR 263

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +AG V +  +    M E    P++ T+  MI  Y   GM   AQ + ++++
Sbjct: 264 EAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLV 314


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 2/326 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E  +++ E MLS G  P +  Y  L+    + G L  A   +N+M+ +  C+P+V TY+I
Sbjct: 371 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTI 429

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K  R +    +L EMS  G+  +AV YN +I    K +K ++  + F  M  S 
Sbjct: 430 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSK 488

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC PDIFT NS+I         E+    Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 489 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 548

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M  R      +TYN +I+   +AG+IEK    F+ M  +G+ PN+I+   L++ 
Sbjct: 549 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 608

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G I      LR + +  +  D   +N +I+   + G  ++   LF  ++     PD
Sbjct: 609 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668

Query: 431 NITFATMIQAYNALGMTEAAQNLENK 456
            IT+ T+I  +   GM + A  L ++
Sbjct: 669 AITYNTLISWHCKEGMFDDAHLLLSR 694



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 2/298 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K  + E+A  + + M   GL  +   Y  L+SA  +   + +A +   DM
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 485

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   CKPD++T++ LI    K ++F+    +  +M   G+  + +TYNT+I  + +   
Sbjct: 486 SS-KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 544

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     + M+  G C  D  T N +I A   +GNIEK    + +    G+  +  + N
Sbjct: 545 MQEALKLVNDMLFRG-CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCN 603

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     R G        +  M  R   P +VTYN +I    K G  ++    F K++  
Sbjct: 604 ILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE 663

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           G+ P++ITY +L+S + K G+      +L +  +S  I +   +  ++S + + GD E
Sbjct: 664 GICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 157/375 (41%), Gaps = 32/375 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  +M  L    + + A  L + M   G  P+  VY  L+ A  + G ++E    + +M
Sbjct: 219 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEM 278

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY------------ 223
             +  C PDV T++  I    K  R     K++  M   G   ++ TY            
Sbjct: 279 LLMG-CIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK 337

Query: 224 -------------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                              NT+I+GY    + +E ++     + S GC PDIFT N++I 
Sbjct: 338 VDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 397

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G +    +  NE  + G + ++ T  IL   + + G  ++ R+V+D M  +    
Sbjct: 398 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 457

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V YN +I    K   ++     F  M  +G KP+  T+ SL+    K     +   + 
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 517

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           + +    VI +T  +N +I A+ + G +++  +L   M  R C  D+IT+  +I+A    
Sbjct: 518 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 577

Query: 445 GMTEAAQNLENKMIA 459
           G  E    L   M++
Sbjct: 578 GNIEKGLALFEDMMS 592



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 164/429 (38%), Gaps = 68/429 (15%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++++F     Q+ Y      +  L+  LG   + +    L   M  +G+     ++  ++
Sbjct: 94  SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIM 153

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCK---------------------------------- 182
             YG++GL  +A   + DM+ V  C+                                  
Sbjct: 154 KHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGI 213

Query: 183 -PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P VYT+ +++K+    +  D    +L +M+  G   +A+ Y T+I    K  +  E+  
Sbjct: 214 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLK 273

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
               M+   GC PD+ T N  I        I +  K  +   L G   +  T  +L    
Sbjct: 274 LLEEMLLM-GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGL 332

Query: 302 GRAGMYDKMRSVMD----------------------------FMQKRFFF----PTVVTY 329
            R G  D+ R +++                             M +        P + TY
Sbjct: 333 CRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 392

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I    K G++    E   +M+ +G +PN ITY  L+  + K G + +  ++L ++  
Sbjct: 393 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 452

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             + L+   +NC+ISA  +   V+    +F  M  + C PD  TF ++I     +   E 
Sbjct: 453 KGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEE 512

Query: 450 AQNLENKMI 458
           A  L   M+
Sbjct: 513 ALGLYQDML 521


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 8/327 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K  +   ASL+ E M+  G  P+V  Y  L++ + + G +DEA    N M
Sbjct: 104 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 163

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S C PDV+TY+ILI    K  R     K+L EM   G E + +TYNT++D   K+ K
Sbjct: 164 LENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGK 222

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQ 292
           + +   + + M+    C P  FT N MI  +   G   +++  Y  F LM   G   DI 
Sbjct: 223 YID-AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVG---QLDLAYELFQLMTDRGCLPDIY 278

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T NI+     RA   D  R +++ M +    P VVTYN ++    KA  +++  E ++ +
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 338

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           ++ G   + +T  +L+    K+  +   + +LR++E +    D   +  +I  + +A  +
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 398

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQ 439
           +K    F  M ++ CVP  IT++ +I 
Sbjct: 399 DKSLAFFSEMLDKGCVPTVITYSIVID 425



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 169/374 (45%), Gaps = 14/374 (3%)

Query: 89  IKQKKWQLALKIF-----GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           +++KK Q A  +F     GL            T++ L+    K +  +QA  L + M   
Sbjct: 9   VRKKKAQEAYDLFKNHLCGLCSPDSI------TYSTLINGFCKARDFQQAYRLLDEMEKR 62

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ P   VY  ++     +G +D A     DM+    C P V TY+IL+ +  K  R   
Sbjct: 63  GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR--HCAPSVITYTILVDALCKSARISD 120

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              IL +M   G   + VTYNT+I+G+ K    +E    F+ M+E+  C PD+FT N +I
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILI 179

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             Y      +   K   E    G + +  T N L  S  ++G Y    ++   M +R   
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P+  T+N++I+ F K G ++   E F+ M  RG  P+  TY  ++S   +A  I     +
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L ++  +    D   +N I+S   +A  V++  E++  ++      D +T +T+I     
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 359

Query: 444 LGMTEAAQNLENKM 457
               + A+ L  +M
Sbjct: 360 SRRLDDAEKLLREM 373



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 125/277 (45%), Gaps = 11/277 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D   KQ++ Q   K+      Q+  +  C+    T+  LM  L K  +   A  L ++M
Sbjct: 179 IDGYCKQERPQDGAKLL-----QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 233

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           L    KPS   +  ++  + + G LD A+     M     C PD+YTY+I+I    + +R
Sbjct: 234 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD-RGCLPDIYTYNIMISGACRANR 292

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D   ++L  M+  G     VTYN+I+ G  KA + +E    +  +  +GG   D+ T +
Sbjct: 293 IDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL-RNGGYFLDVVTCS 351

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I     S  ++  EK   E    G   D+    IL   + +A   DK  +    M  +
Sbjct: 352 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 411

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
              PTV+TY+IVI+   K+  +       K M  RG+
Sbjct: 412 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 2/235 (0%)

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           N ++  + + KK +E    F   +  G C PD  T +++I+ +  + + ++  +  +E  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHL-CGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G+       N + K     G  D        MQ R   P+V+TY I+++   K+  I 
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSARIS 119

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
                 + M   G  PN +TY +L++ + K G + +   +  Q+  +    D   +N +I
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 179

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             Y +    +   +L   M +  C P+ IT+ T++ +    G    A NL   M+
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 234


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 169/334 (50%), Gaps = 23/334 (6%)

Query: 144 GLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSD-----CKPDVYTYSILIKSCTK 197
           GLKP++  Y A++ A G+ G+  + A    ++M   S+      + D++TY+ L+ +  K
Sbjct: 165 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCK 224

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             + DL  +I++EM    I  + VTY+T+IDGY KA + +E  + F+ M +      D  
Sbjct: 225 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM-KFASIGLDRV 283

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + N+++S Y   G  E+      E    G+K D  T N L   YG+ G Y++++ V + M
Sbjct: 284 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM 343

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +    FP ++TY+ +I+ + K G  ++  E F++ K  G+K + + Y +L+ A  K GL+
Sbjct: 344 KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLV 403

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               S L ++    +  +   +N II A+G++G VE   E  +  KE     DN     +
Sbjct: 404 ESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKE-----DN----QI 454

Query: 438 IQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           I+ +  L         E    A KEN G++ I C
Sbjct: 455 IKIFGQLAA-------EKTCHAKKENRGRQEILC 481



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 2/232 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  + K  Q + A  +   M    + P+V  Y+ ++  Y ++G LDEA +  N+M
Sbjct: 214 TYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM 273

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S    D  +Y+ L+    K  RF+    +  EM   GI+  AVTYN ++ GYGK  K
Sbjct: 274 KFAS-IGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGK 332

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +EE++  F  M ++    P++ T +++I  Y   G  ++  + + EF   G+KAD+   +
Sbjct: 333 YEEVKRVFEEM-KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYS 391

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
            L  +  + G+ +   S +D M K    P VVTYN +I+ FG++G +E   E
Sbjct: 392 ALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE 443


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 7/368 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           +  W L  ++F L  +   Y     TF  ++ +L K  + ++A      M + G+KP++ 
Sbjct: 203 EAAWVLYAEMFRLRIKSSVY-----TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIV 257

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  +V  Y  SG ++ A + +  MK     +PD +TY  LI    K  R +   KI  E
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTMKR-QKIEPDSFTYGSLISGMCKQGRLEEASKIFEE 316

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G+  SAV YNT+IDG+      + M S++   +   G  P + T NS+I A     
Sbjct: 317 MVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLKKGISPTMSTYNSLIHALFMEQ 375

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             ++ E    E    G+  D  T NIL   Y R     K   + D M      PT  TY 
Sbjct: 376 RTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYT 435

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++    K   +++ ++ FKK+   G+ P+ I + +L+  +     +     +L+ ++  
Sbjct: 436 SLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRM 495

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V  D   FN I+  + + G VE+  ELF  MK R   PD+I+F T+I  Y+  G  + A
Sbjct: 496 KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDA 555

Query: 451 QNLENKMI 458
             + N+M+
Sbjct: 556 FRVRNEML 563



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 165/349 (47%), Gaps = 24/349 (6%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           +FT   ++ G CKQ   E+AS +FE M+  GL+PS  +Y  L+  +   G LD A +  +
Sbjct: 291 SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 174 DM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +M  K +S   P + TY+ LI +     R D  E ++ E+   GI   A+TYN +I+GY 
Sbjct: 351 EMLKKGIS---PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYC 407

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +    ++       M+ SG   P   T  S++        +++ +  + +    GV  D+
Sbjct: 408 RCANAKKAFLLHDEMLASG-IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDV 466

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
              N L   +           ++  M +    P  VT+N +++   + G +E+  E F +
Sbjct: 467 IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISA 405
           MK RG+KP+ I++ +L+S YS+ G I     +  +      +LDT F      +N ++  
Sbjct: 527 MKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE------MLDTGFNPTVLTYNALVQG 580

Query: 406 Y--GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
               Q GD+ +  EL   M  +   PD+ T+ T+I+    + + +  +N
Sbjct: 581 LCKNQEGDLAE--ELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKN 627



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 177/418 (42%), Gaps = 41/418 (9%)

Query: 78  PKPVLEALDEAIKQKKWQLALKIFGLL---RQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           PKP L  L +A+         +IF  L   R +  +++    F  L+       + ++A 
Sbjct: 113 PKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSI-VFDYLIKSCCDMNRADEAF 171

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
             F  M   G+ P+++   +L+S + +    + A+    +M  +   K  VYT++I+I  
Sbjct: 172 ECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR-IKSSVYTFNIMINV 230

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K  +    +  +  M   G++ + VTYNTI+ GY  + + E  ++  + M +     P
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM-KRQKIEP 289

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D FT  S+IS     G +E+  K + E    G++      N L   +   G  D   +  
Sbjct: 290 DSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYK 349

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 371
           D M K+   PT+ TYN +I         ++ E   K+++ +G+ P++ITY  L++ Y   
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRC 409

Query: 372 --------------------------------SKAGLIMKVDSILRQVENSDVILDTPFF 399
                                           SK   + + D + +++ +  V+ D   F
Sbjct: 410 ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMF 469

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +I  +    +V+   EL   M      PD +TF T++Q +   G  E A+ L ++M
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 1/272 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           +  LIKSC   +R D   +    M   G+  +  T N+++  + K  + E     ++ M 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
                   ++T N MI+     G ++K + +       GVK +I T N +   Y  +G  
Sbjct: 214 RLR-IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +   +++  M+++   P   TY  +I    K G +E+  + F++M  +G++P+++ Y +L
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  +   G +    +   ++    +      +N +I A       ++   +   ++E+  
Sbjct: 333 IDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGI 392

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            PD IT+  +I  Y      + A  L ++M+A
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLA 424



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL+     +      T   +M G C++   E+A  LF+ M   G+KP    +  L+S 
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISG 545

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G + +AF   N+M   +   P V TY+ L++   K    DL E++L EM   G+  
Sbjct: 546 YSRRGDIKDAFRVRNEMLD-TGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 219 SAVTYNTIIDGYGK 232
              TY T+I+G  K
Sbjct: 605 DDTTYFTLIEGIAK 618


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 179/395 (45%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ AL +   +  +  Y      +  L+  + + KQ   A  LF+ M   GL P  
Sbjct: 111 REPDWQRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDR 170

Query: 150 DVYTALVSAYGQSGLLDEA------------------FSTINDM-KSVSD---------- 180
             Y+ L++++G+ GL D +                  +S + D+ + +SD          
Sbjct: 171 YTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSR 230

Query: 181 -----CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+  Y+ +I    K   F     +L EM    ++   V+Y+T++  Y   +K
Sbjct: 231 LKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQK 290

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S F  M E+  C  D+ T N MI  YG     ++ ++ +     MG++ ++ + N
Sbjct: 291 FVEALSLFFEMNEAK-CPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYN 349

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ +     VVTYN +I  +GK    EK     ++MK R
Sbjct: 350 TLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKR 409

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +   + +++ +S V +D   +  +I AY +AG V   
Sbjct: 410 GIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHA 469

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 470 KRLLHELKR----PDNIPRDTAIGILARAGRIEEA 500



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 136/320 (42%), Gaps = 22/320 (6%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+   P++A  LF  M   G++P+V  Y  L+  YG++ L  EA      M+S  D + +
Sbjct: 321 GQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQS-KDVQQN 379

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +I    K    +    ++ EM   GIE +A+TY+TII  + KA K +     F 
Sbjct: 380 VVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQ 439

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            +  S G   D     +MI AY  +G +   ++  +E            + IL     RA
Sbjct: 440 KL-RSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGIL----ARA 494

Query: 305 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           G  ++     R   D  + +     +  +  +I  F K      + E F+KM+  G  P+
Sbjct: 495 GRIEEATWVFRQAFDAREVK----DISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPD 550

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 419
           S     +++A+ K     K D++ RQ+     +        ++S YG   D   +  LF 
Sbjct: 551 SDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFE 610

Query: 420 -------LTMKERHCVPDNI 432
                  +  KE H V  +I
Sbjct: 611 KLDSNPNINKKELHLVVASI 630


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 171/353 (48%), Gaps = 9/353 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           A+ IF  +++++   + C     TFT ++ +   C Q E     F  ML++GLKP++  Y
Sbjct: 321 AIDIFNSMKEKR---SECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSY 377

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+  EAFS  N++K  +   PDV +Y+ L+ +  K  + +   K+   M 
Sbjct: 378 NALIGAYASHGMDKEAFSVFNEIKK-NGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMR 436

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
               + + V+YN +ID YG      E       M E  G  P+I ++ ++++A G  G  
Sbjct: 437 RNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM-ERNGVQPNIVSICTLLAACGRCGQK 495

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K++   +   L G+K +    N    SY   G YDK  S+   M+ +   P  VTYN++
Sbjct: 496 VKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVL 555

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I    K     +   +  +M    +  +   Y S++ AYSK G + + +S+  +++    
Sbjct: 556 ISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGC 615

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             D   +  +I AY  A + EK   LFL M+     PD+I  +++++A+N  G
Sbjct: 616 RPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGG 668



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 177/368 (48%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  +  I    +  +W+ A+ I   + +     +R  T+  L+   G     ++A 
Sbjct: 194 KPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSR-STYNNLINACGSSGNWKEAL 252

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY +     +  S    MK  ++ +PD  T +I+I  
Sbjct: 253 NVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKG-TNIRPDTTTLNIVIYC 311

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
             K  +      I   M     EC    VT+ TII  Y    + E  +++F+ M+ + G 
Sbjct: 312 LVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTML-AEGL 370

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N++I AY + G  ++    +NE    G   D+ +   L  +YG++G  +K   
Sbjct: 371 KPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMK 430

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V + M++    P +V+YN +I+ +G  G + +  E   +M+  G++PN ++ C+L++A  
Sbjct: 431 VFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACG 490

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + G  +K+ S+L   E   + L+T  +N  I +Y   G+ +K   L+  M+ +   PD +
Sbjct: 491 RCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPV 550

Query: 433 TFATMIQA 440
           T+  +I  
Sbjct: 551 TYNVLISG 558



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 161/358 (44%), Gaps = 38/358 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A  +F  +++   +     ++T L+   GK  +PE+A  +FE+M  +  KP++  Y AL+
Sbjct: 393 AFSVFNEIKKNG-FHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALI 451

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG  GLL EA   +++M+  +  +P++ +   L+ +C +  +   I+ +L+     GI
Sbjct: 452 DAYGSKGLLTEAVEILHEMER-NGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGI 510

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS------------ 264
           + +   YN+ I  Y    ++++  S + AM  +    PD  T N +IS            
Sbjct: 511 KLNTTAYNSAIGSYLSVGEYDKALSLYRAM-RTKKVKPDPVTYNVLISGCCKMSKYGEAL 569

Query: 265 -----------------------AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
                                  AY   G + + E  + +  ++G + D+ T   +  +Y
Sbjct: 570 GFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAY 629

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
             A  ++K  ++   M+     P  +  + ++  F K G   K+    + M+ + +  N+
Sbjct: 630 DVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNN 689

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            ++  +VSA S      ++  +++ +E S  ++     N ++   G++G +E M +LF
Sbjct: 690 SSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLF 747



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     +++    + E      K D +T N L  ++GRAG +    ++M
Sbjct: 163 DIY--NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIM 220

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  ++SAY + 
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRG 280

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               KV S    ++ +++  DT   N +I    + G   K  ++F +MKE+   C PD +
Sbjct: 281 NQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVV 340

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF T+I  Y+  G  E  Q   N M+A
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTMLA 367



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 134/317 (42%), Gaps = 37/317 (11%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    +   L+   G+C Q  +   +       G+K +   Y + + +Y   G  D+A S
Sbjct: 476 QPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALS 535

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               M++    KPD  TY++LI  C K  ++      L EM  L I  S   Y+++I  Y
Sbjct: 536 LYRAMRT-KKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAY 594

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  +  E ES F+ M +  GC PD+ T  +MI AY  + N EK    + E     V+ D
Sbjct: 595 SKQGQVTEAESMFTKM-KMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPD 653

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFF-------------------- 323
               + L +++ + G   K+  + +FM+++        FF                    
Sbjct: 654 SIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIK 713

Query: 324 ---PTVVTYNI-----VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
              P++   +I     ++   GK+G IE M + F K+   G + N  TY  L+     AG
Sbjct: 714 LMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAG 773

Query: 376 LIMKVDSILRQVENSDV 392
              K   +L+ +E + +
Sbjct: 774 NWRKYIEVLQWMEEAGL 790


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 171/353 (48%), Gaps = 9/353 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           A+ IF  +++++   + C     TFT ++ +   C Q E     F  ML++GLKP++  Y
Sbjct: 321 AIDIFNSMKEKR---SECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSY 377

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+  EAFS  N++K  +   PDV +Y+ L+ +  K  + +   K+   M 
Sbjct: 378 NALIGAYASHGMDKEAFSVFNEIKK-NGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMR 436

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
               + + V+YN +ID YG      E       M E  G  P+I ++ ++++A G  G  
Sbjct: 437 RNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM-ERNGVQPNIVSICTLLAACGRCGQK 495

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K++   +   L G+K +    N    SY   G YDK  S+   M+ +   P  VTYN++
Sbjct: 496 VKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVL 555

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I    K     +   +  +M    +  +   Y S++ AYSK G + + +S+  +++    
Sbjct: 556 ISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGC 615

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             D   +  +I AY  A + EK   LFL M+     PD+I  +++++A+N  G
Sbjct: 616 RPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGG 668



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 177/368 (48%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  +  I    +  +W+ A+ I   + +     +R  T+  L+   G     ++A 
Sbjct: 194 KPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSR-STYNNLINACGSSGNWKEAL 252

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY +     +  S    MK  ++ +PD  T +I+I  
Sbjct: 253 NVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKG-TNIRPDTTTLNIVIYC 311

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
             K  +      I   M     EC    VT+ TII  Y    + E  +++F+ M+ + G 
Sbjct: 312 LVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTML-AEGL 370

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N++I AY + G  ++    +NE    G   D+ +   L  +YG++G  +K   
Sbjct: 371 KPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMK 430

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V + M++    P +V+YN +I+ +G  G + +  E   +M+  G++PN ++ C+L++A  
Sbjct: 431 VFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACG 490

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + G  +K+ S+L   E   + L+T  +N  I +Y   G+ +K   L+  M+ +   PD +
Sbjct: 491 RCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPV 550

Query: 433 TFATMIQA 440
           T+  +I  
Sbjct: 551 TYNVLISG 558



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 161/358 (44%), Gaps = 38/358 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A  +F  +++   +     ++T L+   GK  +PE+A  +FE+M  +  KP++  Y AL+
Sbjct: 393 AFSVFNEIKKNG-FHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALI 451

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG  GLL EA   +++M+  +  +P++ +   L+ +C +  +   I+ +L+     GI
Sbjct: 452 DAYGSKGLLTEAVEILHEMER-NGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGI 510

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS------------ 264
           + +   YN+ I  Y    ++++  S + AM  +    PD  T N +IS            
Sbjct: 511 KLNTTAYNSAIGSYLSVGEYDKALSLYRAM-RTKKVKPDPVTYNVLISGCCKMSKYGEAL 569

Query: 265 -----------------------AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
                                  AY   G + + E  + +  ++G + D+ T   +  +Y
Sbjct: 570 GFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAY 629

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
             A  ++K  ++   M+     P  +  + ++  F K G   K+    + M+ + +  N+
Sbjct: 630 DVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNN 689

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            ++  +VSA S      ++  +++ +E S  ++     N ++   G++G +E M +LF
Sbjct: 690 SSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLF 747



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 150/357 (42%), Gaps = 43/357 (12%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    +   L+   G+C Q  +   +       G+K +   Y + + +Y   G  D+A S
Sbjct: 476 QPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALS 535

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               M++    KPD  TY++LI  C K  ++      L EM  L I  S   Y+++I  Y
Sbjct: 536 LYRAMRT-KKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAY 594

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  +  E ES F+ M +  GC PD+ T  +MI AY  + N EK    + E     V+ D
Sbjct: 595 SKQGQVTEAESMFTKM-KMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPD 653

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFF-------------------- 323
               + L +++ + G   K+  + +FM+++        FF                    
Sbjct: 654 SIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIK 713

Query: 324 ---PTVVTYNI-----VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
              P++   +I     ++   GK+G IE M + F K+   G + N  TY  L+     AG
Sbjct: 714 LMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAG 773

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIIS-AYGQAGDVEKMGELFLTMKERHCVPDN 431
              K   +L+ +E + +      +  I S A  ++G      E    ++ER  +PDN
Sbjct: 774 NWRKYIEVLQWMEEAGLQPSVGMYRSISSFAQNRSG-----AEYAAVIQERIGMPDN 825



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     +++    + E      K D +T N L  ++GRAG +    ++M
Sbjct: 163 DIY--NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIM 220

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  ++SAY + 
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRG 280

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               KV S    ++ +++  DT   N +I    + G   K  ++F +MKE+   C PD +
Sbjct: 281 NQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVV 340

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF T+I  Y+  G  E  Q   N M+A
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTMLA 367


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 2/291 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL  F  L++Q  ++    T+T ++  LG+ KQ    + L + M+ DG +P+   Y  L+
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 406

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +YG++  L+EA +  N M+  + CKPD  TY  LI    K    D+   +   M   G+
Sbjct: 407 HSYGRANYLNEAMNVFNQMQE-AGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGL 465

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TY+ II+  GKA         F  MV+  GC P++ T N M+  +  + N +   
Sbjct: 466 SPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ-GCTPNLVTYNIMMDLHAKARNYQSAL 524

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K Y +    G + D  T +I+ +  G  G  ++  +V   MQ++ + P    Y ++++ +
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           GKAG++EK  ++++ M H G+ PN  T  SL+S + +   I +   +L+ +
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDK 539

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M     +P+  T  +++  +  +     A  L   M+A+
Sbjct: 600 MLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEP 537

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 455 NKMI 458
             M+
Sbjct: 598 QAML 601



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G   D +  N ++    + GN      W       G K D  T   +  + GRA  +  +
Sbjct: 326 GLRIDAYQANQVLKQMNDYGNALGFFYWLKR--QPGFKHDGHTYTTMVGNLGRAKQFGAI 383

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++D M +    P  VTYN +I ++G+A ++ +    F +M+  G KP+ +TYC+L+  
Sbjct: 384 NKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDI 443

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           ++KAG +     + ++++   +  DT  ++ II+  G+AG +    +LF  M ++ C P+
Sbjct: 444 HAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPN 503

Query: 431 NITFATMIQAY 441
            +T+  M+  +
Sbjct: 504 LVTYNIMMDLH 514



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 254
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTY 542

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           + +++     G  E A+ +  +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 17/114 (14%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           EA+   ++QK W     ++GLL                + + GK    E+A   ++ ML 
Sbjct: 559 EAVFTEMQQKNWIPDEPVYGLL----------------VDLWGKAGNVEKAWQWYQAMLH 602

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            GL P+V    +L+S + +   + EA+  + +M ++   +P + TY++L+  CT
Sbjct: 603 AGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG-LRPSLQTYTLLLSCCT 655


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 164/353 (46%), Gaps = 10/353 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T ++  L K K+ + A  L E + ++G  P++  Y AL++   + G L+EA   I+ 
Sbjct: 166 HTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDL 222

Query: 175 MKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++ + D  C PDV TY+ LI    K  R     K+  EM+  G+    V Y  +I G  +
Sbjct: 223 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQ 282

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A K  +  S +  M  S GC PD+ TL++MI     +G I    + +      G+  +  
Sbjct: 283 AGKIPQASSVYKTMT-SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEV 341

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             + L     +A   D    ++  M+K F  P  +TYNI+I+   K+G +E    +F +M
Sbjct: 342 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 401

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G KP+  TY  LVS + KAG       +   + +S    +   +  +IS   +   +
Sbjct: 402 LEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQL 461

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            K    F  MKER C PD+  +++++      G  E    L ++M    E SG
Sbjct: 462 TKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM----ERSG 510



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 128/277 (46%), Gaps = 2/277 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK K+  +A  LF+ M   GL      YTAL+    Q+G + +A S    M
Sbjct: 237 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTM 296

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV T S +I    K  R     +I   M   G+  + V Y+ +I G  KA+K
Sbjct: 297 TS-QGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 355

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +      + M +   C PD  T N +I     SG++E    +++E    G K D+ T N
Sbjct: 356 MDCALEMLAQM-KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 414

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   + +AG  D    V D M      P VVTY  +I    K   + K   YF+ MK R
Sbjct: 415 ILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKER 474

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           G  P+S  Y SLV    K+G +     +  ++E S V
Sbjct: 475 GCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 511



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 172/406 (42%), Gaps = 45/406 (11%)

Query: 92  KKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           K   LA ++F  L   ++ +Q    T   L+ +  + K+  +A  L +  L+    P V+
Sbjct: 36  KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVE 95

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMK---------------------------------- 176
            +  L++ Y  +   +EAF+ I +M+                                  
Sbjct: 96  TWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFET 155

Query: 177 -SVSDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            + + C  D++TY+ ++    K  +      L+EKI A     G   +  TYN +++G  
Sbjct: 156 TTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITAN----GCTPTIATYNALLNGLC 211

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + EE       +V++G C PD+ T  S+I   G      +  K + E  L G+  D 
Sbjct: 212 KMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDT 270

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
                L +   +AG   +  SV   M  +   P VVT + +I+   KAG I      FK 
Sbjct: 271 VCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKS 330

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ RG+ PN + Y +L+    KA  +     +L Q++ +    DT  +N +I    ++GD
Sbjct: 331 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 390

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           VE     F  M E  C PD  T+  ++  +   G T+AA  + + M
Sbjct: 391 VEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 6/266 (2%)

Query: 196 TKFHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
           TK HR   +L++  LA      +E    T+N +I GY  A++ EE  +    M E  G  
Sbjct: 72  TKRHREAGNLLKNELATTFLPDVE----TWNVLITGYCLAREPEEAFAVIREMEEDYGVA 127

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P + T N ++     SG +      +      G   DI T   +     +        ++
Sbjct: 128 PSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVAL 187

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           M+ +      PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K
Sbjct: 188 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 247

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
                +   + +++    ++LDT  +  +I    QAG + +   ++ TM  + CVPD +T
Sbjct: 248 EKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 307

Query: 434 FATMIQAYNALGMTEAAQNLENKMIA 459
            +TMI      G   AA  +   M A
Sbjct: 308 LSTMIDGLCKAGRIGAAVRIFKSMEA 333



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 99/243 (40%), Gaps = 48/243 (19%)

Query: 70  SKKYKNLWPKPVL-EALDEAI-KQKKWQLALKIFGLLRQQQWYQARC--QTFTKLMVMLG 125
           S + + L P  V+  AL   + K +K   AL++       Q  +A C   T T  +++ G
Sbjct: 330 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA-----QMKKAFCTPDTITYNILIDG 384

Query: 126 KCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
            CK    E A   F+ ML  G KP V  Y  LVS + ++G  D A    +DM S S C P
Sbjct: 385 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSS-SHCSP 443

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------F 236
           +V TY  LI    K  +          M   G    +  Y++++DG  K+ K       F
Sbjct: 444 NVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLF 503

Query: 237 EEMESS---------------------------FSAMVESGGCHPDIFTLNSMISAYGNS 269
           +EME S                           F+A+ + G  HP  +  NS+IS    S
Sbjct: 504 DEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP--YAYNSIISTLIKS 561

Query: 270 GNI 272
             +
Sbjct: 562 AKV 564


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 167/332 (50%), Gaps = 3/332 (0%)

Query: 86  DEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ +KQ +   +AL  F  L+Q   ++    T+T ++ +LG+ KQ    + L + M+ DG
Sbjct: 309 NQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDG 368

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P+V  Y  L+ +YG++  L++A    N M+  + C+PD  TY  LI    K    +  
Sbjct: 369 CQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQK-AGCEPDRVTYCTLIDIHAKAGFLNFA 427

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G+     TY+ +I+  GKA      +  F  M+E G C P++ T N MI+
Sbjct: 428 MEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQG-CVPNLVTYNIMIA 486

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               + N +   K Y +    G + D  T +I+ +  G +G  D+  ++   M+++ + P
Sbjct: 487 LQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVP 546

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
               Y ++++ +GKAG++EK  E+++ M H G+ PN  T  SL+SA+ +   +    ++L
Sbjct: 547 DEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLL 606

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + + N  +      +  ++S   +A     MG
Sbjct: 607 QSMLNLGLNPSLQTYTLLLSCCTEARSPYDMG 638



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 140/289 (48%), Gaps = 1/289 (0%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K +   K D YTY+ ++    +  +F  I K+L +M   G + + VTYN +I  YG+A 
Sbjct: 328 LKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRAN 387

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              +    F+ M +  GC PD  T  ++I  +  +G +    + Y      G+  D  T 
Sbjct: 388 YLNDAVEVFNQM-QKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTY 446

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +++    G+AG       +   M ++   P +VTYNI+I    KA + +   + ++ M++
Sbjct: 447 SVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQN 506

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +P+ +TY  ++     +G + + ++I  +++  + + D P +  ++  +G+AG+VEK
Sbjct: 507 AGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEK 566

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
             E +  M      P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 567 AWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLN 615



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 8/206 (3%)

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           CH D +  N ++    +         W  +  L G K D  T   +    GRA  +  + 
Sbjct: 301 CHMDAYQANQVLKQLQDHTVALGFFHWLKQ--LPGFKHDGYTYTTMVGILGRAKQFVAIN 358

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++D M +    PTVVTYN +I ++G+A ++    E F +M+  G +P+ +TYC+L+  +
Sbjct: 359 KLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIH 418

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           +KAG +     + ++++ + +  DT  ++ +I+  G+AG +    +LF  M E+ CVP+ 
Sbjct: 419 AKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNL 478

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
           +T+  MI       +   A+N +N +
Sbjct: 479 VTYNIMI------ALQAKARNYQNAL 498



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 146/323 (45%), Gaps = 13/323 (4%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKF----HRF 201
           S+   ++L S    S   D+  +    +K+  + +P  D    +++ +S  +F    H  
Sbjct: 217 SIAADSSLDSHSLPSDAFDKRRTIPQRLKAQPNRRPSRDTKMPAVVARSARQFVSTGHVV 276

Query: 202 DLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESS------FSAMVESGGCHP 254
           + + +IL ++ +    E + V  N  +D Y   +  ++++        F  + +  G   
Sbjct: 277 ENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKH 336

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D +T  +M+   G +     + K  ++    G +  + T N L  SYGRA   +    V 
Sbjct: 337 DGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVF 396

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + MQK    P  VTY  +I+   KAG +    E +++M+  G+ P++ TY  +++   KA
Sbjct: 397 NQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKA 456

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +   D +  ++     + +   +N +I+   +A + +   +L+  M+     PD +T+
Sbjct: 457 GHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTY 516

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           + +++     G  + A+ + ++M
Sbjct: 517 SIVMEVLGHSGYLDEAEAIFSEM 539



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 4/298 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +++ M + GL P    Y+ +++  G++G L  A     +M     C P++ TY+I+I   
Sbjct: 430 MYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIE-QGCVPNLVTYNIMIALQ 488

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K   +    K+  +M   G E   VTY+ +++  G +   +E E+ FS M       PD
Sbjct: 489 AKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWV-PD 547

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
                 ++  +G +GN+EK  +WY      G+  ++ T N L  ++ R        +++ 
Sbjct: 548 EPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQ 607

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA- 374
            M      P++ TY +++    +A     M  Y + M   G  P  +   SL SA     
Sbjct: 608 SMLNLGLNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTG-HPAHMFLSSLPSAGPDGQ 666

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
            +   V   L  + + D        + ++    ++G  E+ G ++    +R+  PD +
Sbjct: 667 NVRHHVSKFLDMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAV 724


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  D  I    +  +W+ A+ +   + +     +R  T+  L+   G      QA 
Sbjct: 175 KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSR-STYNNLINACGSSGNWRQAL 233

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I  
Sbjct: 234 EVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYC 292

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +K  +      +   M     EC    VT+ +I+  Y    + E   + F AM+ + G 
Sbjct: 293 LSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAML-AEGL 351

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY   G  E     + +    G+  D+ +   L  SYGR+    K + 
Sbjct: 352 KPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKE 411

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V   M+K    P VVTYN +I+ +G  G + +  E F++M+  G KPN ++ C+L++A S
Sbjct: 412 VFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACS 471

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++   + V+++L   ++  + L+T  +N  I +Y  A ++EK   L+ TM+++    D++
Sbjct: 472 RSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSV 531

Query: 433 TFATMIQA 440
           TF  +I  
Sbjct: 532 TFTILISG 539



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 164/351 (46%), Gaps = 44/351 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           AL +F  +R ++   A C+    TFT +M +     + E    +FE ML++GLKP++  Y
Sbjct: 302 ALDVFNSMRDKR---AECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSY 358

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+ + A S   D+K  +   PDV                           
Sbjct: 359 NALMGAYAVHGMSENALSVFGDIKR-NGIVPDV--------------------------- 390

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                   V+Y ++++ YG++++  + +  F  M+      P++ T N++I AYG++G +
Sbjct: 391 --------VSYTSLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  + + +    G K ++ ++  L  +  R+     + +V+   Q R        YN  
Sbjct: 442 AEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSA 501

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I ++  A  +EK    ++ M+ + +K +S+T+  L+S   +     +  S L+++E+  +
Sbjct: 502 IGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            L    ++ ++ AY + G V +   +F  MK   C PD I + +M+ AYNA
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNA 612



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 180/394 (45%), Gaps = 11/394 (2%)

Query: 67  KVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126
           +V + +++  W   V E +D  +   +W+   ++ G+L       AR + F  L+  L +
Sbjct: 66  RVENDRFQKDWS--VSEVVDRLMALNRWE---EVDGVLNSWVGRFAR-KNFPVLIRELSR 119

Query: 127 CKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
               E    +F+ M S        D+Y  ++  + +   +D+A     +M+  S CKPD 
Sbjct: 120 RGCIELCVNVFKWMKSQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDA 178

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY  LI +  +  ++     ++ +M    I  S  TYN +I+  G +  + +       
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKK 238

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M ++G   PD+ T N ++SAY +     K   ++       V+ D  T NI+     + G
Sbjct: 239 MTDNG-VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 306 MYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              +   V + M+ +     P VVT+  ++  +   G IE     F+ M   G+KPN ++
Sbjct: 298 QSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVS 357

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L+ AY+  G+     S+   ++ + ++ D   +  ++++YG++    K  E+FL M+
Sbjct: 358 YNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMR 417

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +    P+ +T+  +I AY + G    A  +  +M
Sbjct: 418 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     +++    + E      K D +T + L  ++GRAG +    ++M
Sbjct: 144 DIY--NMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLM 201

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+  +  E  KKM   G+ P+ +T+  ++SAY   
Sbjct: 202 DDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSG 261

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  S    ++ + V  DT  FN II    + G   +  ++F +M+++   C PD +
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVV 321

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF +++  Y+  G  E  + +   M+A
Sbjct: 322 TFTSIMHLYSVRGEIENCRAVFEAMLA 348



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 140/352 (39%), Gaps = 38/352 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A++IF  + +Q   +    +   L+    + K+      +     S G+  +   Y + +
Sbjct: 444 AVEIFRQM-EQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAI 502

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +Y  +  L++A +    M+     K D  T++ILI    +  ++      L EM  L I
Sbjct: 503 GSYINAAELEKAIALYQTMRK-KKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +   Y++++  Y K  +  E ES F+ M +  GC PD+    SM+ AY  S    K  
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCKPDVIAYTSMLHAYNASEKWGKAC 620

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFPTVVTY 329
           + + E    G++ D    + L +++ + G    +  +MD M+++        FF      
Sbjct: 621 ELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSAC 680

Query: 330 NIVIE----------------------------TFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           N + E                             FGK+G +E M + F K+   G++ N 
Sbjct: 681 NTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLYLFGKSGKVEAMMKLFYKIIASGVEINF 740

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            TY  L+      G   K   +L  + ++ +      +  IIS   ++  +E
Sbjct: 741 KTYAILLEHLLAVGNWRKYIEVLEWMSDAGIQPSNQMYRDIISFGERSAGIE 792


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 180/373 (48%), Gaps = 7/373 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           +K W L  ++F     +   ++   TF  ++ +L K  + ++A     +M + G+KP+V 
Sbjct: 173 EKAWVLYAEMF-----RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVV 227

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  ++  Y   G ++ A   I D+      KPD YTY   I    K  + +    +L +
Sbjct: 228 TYNTIIHGYCSRGRVEGA-RMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEK 286

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M  +G+  +AVTYNT+IDGY      E        MV  G   P + T N +I A     
Sbjct: 287 MKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREG-LMPTVSTYNMLIHALFLDC 345

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++ +    E +  G+  D  T NIL   Y R G   K  ++ D M  +   PT VTY 
Sbjct: 346 KMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYT 405

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I    K G +++ ++ F+K+  +G+ P+ I + +L+  +   G + +  ++L++++  
Sbjct: 406 SLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQM 465

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V+ D   FN ++    + G VE   EL   MK R   PD+I++ T+I  Y+  G  + A
Sbjct: 466 KVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDA 525

Query: 451 QNLENKMIAMKEN 463
             + ++M+++  N
Sbjct: 526 FRVRDEMLSIGFN 538



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 2/332 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K  + E+A +L+  M    +K SV  +  +++   + G L +A   I  M+++   KP+V
Sbjct: 168 KSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALG-IKPNV 226

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY+ +I       R +    I   M   G++  + TY + I G  K  K EE       
Sbjct: 227 VTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEK 286

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M E G   P   T N++I  Y N GN+E    + ++    G+   + T N+L  +     
Sbjct: 287 MKEIG-LRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D+   ++  M ++   P  VTYNI+I  + + G+++K      +M  +G++P  +TY 
Sbjct: 346 KMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYT 405

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           SL+   SK G + + D +  ++    +  D   FN +I  +   G++++   +   M + 
Sbjct: 406 SLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQM 465

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             VPD +TF T++Q     G  EAA+ L  +M
Sbjct: 466 KVVPDEVTFNTLMQGRCREGKVEAARELIEEM 497



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 153/318 (48%), Gaps = 9/318 (2%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+K  V +Y  L+ A  +    D+AF   + MK      P V+  + ++    K +R + 
Sbjct: 117 GIKTYV-LYDLLIRACCELKRGDDAFECFDMMKG-KGVIPHVHACNDMLSLFLKSNRTEK 174

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              + AEM  + I+ S VT+N +I+     GK KK +E    F  ++E+ G  P++ T N
Sbjct: 175 AWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKE----FIGLMEALGIKPNVVTYN 230

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  Y + G +E     ++     GVK D  T         + G  ++   +++ M++ 
Sbjct: 231 TIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEI 290

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              PT VTYN +I+ +   G++E   +Y  KM   G+ P   TY  L+ A      + + 
Sbjct: 291 GLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEA 350

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D I++++    ++ D+  +N +I+ Y + G+V+K   L   M  +   P  +T+ ++I  
Sbjct: 351 DGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYV 410

Query: 441 YNALGMTEAAQNLENKMI 458
            +  G  + A +L  K++
Sbjct: 411 LSKRGRMKQADDLFEKIV 428



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 137/325 (42%), Gaps = 40/325 (12%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+   E+AS + E M   GL+P+   Y  L+  Y   G L+ AF   + M       
Sbjct: 270 GMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVR-EGLM 328

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P V TY++LI +     + D  + I+ EMS  G+   +VTYN +I+GY +    ++  + 
Sbjct: 329 PTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTL 388

Query: 243 FSAMVESG----------------------------------GCHPDIFTLNSMISAYGN 268
              M+  G                                  G  PD+   N++I  +  
Sbjct: 389 HDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCA 448

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +GN+++      E + M V  D  T N L +   R G  +  R +++ M+ R   P  ++
Sbjct: 449 NGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHIS 508

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I  + K G ++       +M   G  P  +TY +L+    K       + +L+++ 
Sbjct: 509 YNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMI 568

Query: 389 NSDVILDTPFFNCIISAYGQAGDVE 413
           +  +   TP  N  +S     G+VE
Sbjct: 569 SKGI---TPNDNTYLSLIEGIGNVE 590



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 37/281 (13%)

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           LGI+ + V Y+ +I    + K+ ++    F  M++  G  P +   N M+S +  S   E
Sbjct: 116 LGIK-TYVLYDLLIRACCELKRGDDAFECFD-MMKGKGVIPHVHACNDMLSLFLKSNRTE 173

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           K    Y E   M +K+ + T NI+     + G   K +  +  M+     P VVTYN +I
Sbjct: 174 KAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTII 233

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
             +   G +E     F  MK RG+KP+S TY S +S   K G + +   +L +++   + 
Sbjct: 234 HGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLR 293

Query: 394 LDTPFFNCIISAYGQAGDVE--------------------------------KMGE---L 418
                +N +I  Y   G++E                                KM E   +
Sbjct: 294 PTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGI 353

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              M E+  VPD++T+  +I  Y   G  + A  L ++MI+
Sbjct: 354 IKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS 394


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 172/351 (49%), Gaps = 2/351 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++V   + +   +A  +F  ML  G+ P +  ++++V  + ++G L  A +    M
Sbjct: 331 TFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM 390

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K V    PD   Y+ILI    +        K+  EM   G     VTYNT+++G  + K 
Sbjct: 391 KGVG-LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKM 449

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++ +  F  MVE G   PD +TL ++I  Y   GN+ K    +    L  +K D+ T N
Sbjct: 450 LDDADELFKEMVERG-VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYN 508

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  +K + +   M  R  FP+ ++++I+I  F   G + +    + +MK +
Sbjct: 509 TLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEK 568

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP  +T  +++  Y +AG + K +  L  + +  V  D   +N +I+++ +  + ++ 
Sbjct: 569 GIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRA 628

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466
             L   M+ER  +P+ +T+  ++  ++  G  + A+ + +KMI    N  K
Sbjct: 629 FFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDK 679



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 167/370 (45%), Gaps = 39/370 (10%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           + ++  + S  F+++   G   S++   AL+ A  + G +D A+    D     +   +V
Sbjct: 166 QARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNI-VNV 224

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YT +I++ +  K  + D +   L+EM   G+    VTYNT+++ Y +     E       
Sbjct: 225 YTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN-ILTKSYGRA 304
           M    G  P +FT N++I+     G+ E+ ++  +E   +G+  +  T N +L +S  + 
Sbjct: 285 MA-GKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKE 343

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            +++  R V + M +R   P +++++ ++  F + G + +   YF+KMK  G+ P+++ Y
Sbjct: 344 DVWEAER-VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402

Query: 365 CSLVSAYSK----------------AGLIMKV-------------------DSILRQVEN 389
             L++ Y +                 G +M V                   D + +++  
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  D      +I  Y + G++ K   LF TM  R   PD +T+ T++  +  +G  E 
Sbjct: 463 RGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEK 522

Query: 450 AQNLENKMIA 459
           A+ L   MI+
Sbjct: 523 AKELWYDMIS 532



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 149/350 (42%), Gaps = 21/350 (6%)

Query: 128 KQPEQASLLFEVMLSDGLK-------------------PSVDVYTALVSAYGQSGLLDEA 168
           K PE  SLL  ++   G+                     +V V+  L+  Y Q+  L E 
Sbjct: 114 KLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVVFDLLIRTYVQARKLREG 173

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
                 ++    C   +   + L+ +  K    DL  K+  +    G   +  T N +++
Sbjct: 174 SEAFQLLRKRGFC-VSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVN 232

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
              K  K + +    S M E  G + D+ T N++++AY   G + +     +     G+K
Sbjct: 233 ALCKDGKLDNVGVYLSEM-EEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLK 291

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
             + T N L     + G Y++ + V+D M      P   T+N ++    +   + + E  
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERV 351

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F +M  RG+ P+ I++ S+V  +S+ G + +  +   +++   ++ DT  +  +I+ Y +
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR 411

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             DV    ++   M ER CV D +T+ T++       M + A  L  +M+
Sbjct: 412 NDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMV 461



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T  K  +  G      +A+     M+S+G+ P    Y  L++++ +    D AF  IN
Sbjct: 577 CNTIIKGYLRAGNL---SKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLIN 633

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M+      P++ TY+ ++   ++  R    E +L +M   GI     TY ++I+GY   
Sbjct: 634 NMEE-RGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSK 692

Query: 234 KKFEEMESSFSAMVESGGCHPDIF 257
              +E       M++ G    D F
Sbjct: 693 DNMKEAFRVHDEMLQRGFVPDDKF 716



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 73/170 (42%)

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +   ++L ++Y +A    +       ++KR F  ++   N ++    K G ++   + ++
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
                G   N  T   +V+A  K G +  V   L ++E   V  D   +N +++AY + G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            V +   L   M  +   P   T+  +I      G  E A+ + ++M+ +
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGV 323


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 141/276 (51%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+VYTY+IL+++     R +    ++ +M   G   +AVTYNT++  + +A + +  E  
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
            S M E G   P++ T NSM++    +G +E   K ++E    G+  D+ + N L   Y 
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G   +  +V   M +R   P VVT+  +I    KAG++E+      +M+ RG++ N +
Sbjct: 128 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 187

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T+ +L+  + K G +      + ++    +      +N +I+ Y + G ++   EL   M
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 247

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + +   PD +T++T+I  Y  +G  ++A  L  KM+
Sbjct: 248 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 283



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 165/343 (48%), Gaps = 1/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    + E+A  +   M   G  P+   Y  LV+A+ ++G LD A   ++ M
Sbjct: 12  TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 71

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   + KP++ T++ ++    K  R +   K+  EM   G+    V+YNT++ GY K   
Sbjct: 72  REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGC 131

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  + FS M + G   PD+ T  S+I A   +GN+E+      +    G++ +  T  
Sbjct: 132 LHESLAVFSEMTQRG-LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 190

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  D     ++ M+K    P+VV YN +I  + K G ++   E  ++M+ +
Sbjct: 191 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 250

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +KP+ +TY +++S Y K G +     + +++    V+ D   ++ +I    +   +   
Sbjct: 251 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 310

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  M +    PD  T+ T+I  +   G  E A +L ++MI
Sbjct: 311 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 353



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M+  G+ P+V  Y  LV A    G L+EA   + DM+  + C P+  TY+ L+ +  +  
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRG-AGCAPNAVTYNTLVAAFCRAG 59

Query: 200 RFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
             D  E++++ M   G  + + VT+N++++G  KA + E     F  MV   G  PD+ +
Sbjct: 60  ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPDVVS 118

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N+++S Y   G + +    ++E    G+  D+ T   L  +  +AG  ++  +++  M+
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +R      VT+  +I+ F K G ++      ++M+  G++P+ + Y +L++ Y K G + 
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               ++R++E   V  D   ++ IIS Y + G+++   +L   M ++  +PD IT++++I
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298

Query: 439 QA 440
           + 
Sbjct: 299 RG 300



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++  L+R++   +    TF  ++  L K  + E A  +F+ M+ +GL P V  Y  L+
Sbjct: 64  AERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 123

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S Y + G L E+ +  ++M       PDV T++ LI +  K    +    ++A+M   G+
Sbjct: 124 SGYCKVGCLHESLAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 182

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + VT+  +IDG+ K    ++   +   M + G   P +   N++I+ Y   G ++   
Sbjct: 183 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG-IQPSVVCYNALINGYCKLGRMDLAR 241

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +   E     VK D+ T + +   Y + G  D    +   M K+   P  +TY+ +I   
Sbjct: 242 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 301

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +   +    E F+ M   G++P+  TY +L+  + K G + K  S+  ++    V+ D 
Sbjct: 302 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 361

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             ++ +I+   ++   ++   L   +     VPDNI +  ++
Sbjct: 362 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 17/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+    K    EQA  L   M   GL+ +   +TAL+  + + G LD+A   + +M
Sbjct: 153 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 212

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +P V  Y+ LI    K  R DL  +++ EM    ++   VTY+TII GY K   
Sbjct: 213 RKCG-IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 271

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        M++ G   PD  T +S+I        +    + +     +GV+ D  T  
Sbjct: 272 LDSAFQLNQKMLKKG-VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 330

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G  +K  S+ D M ++   P VVTY+++I    K+   ++      K+ H 
Sbjct: 331 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE 390

Query: 356 GMKPNSITYCSLVSAYSKA---------------GLIMKVDSILRQVENSDVILDTPFFN 400
              P++I Y +L+   SKA               GL+ + D + + + + +  LD   ++
Sbjct: 391 DPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYS 450

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
            +I  + + G+V K       M      P++ +  ++++     GM   A N
Sbjct: 451 ILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 502



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 152/366 (41%), Gaps = 56/366 (15%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           TFT L+   G CK+   + A L  E M   G++PSV  Y AL++ Y + G +D A   I 
Sbjct: 188 TFTALID--GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M++    KPDV TYS +I    K    D   ++  +M   G+   A+TY+++I G  + 
Sbjct: 246 EMEA-KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE 304

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K+  +    F  M++ G   PD FT  ++I  +   GN+EK    ++E    GV  D+ T
Sbjct: 305 KRLNDACELFENMLQLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 363

Query: 294 LNILT--------------------------------------------------KSYGR 303
            ++L                                                   K +  
Sbjct: 364 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCM 423

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G+  +   V   M  R +      Y+I+I    + G++ K   + K+M   G  PNS +
Sbjct: 424 KGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 483

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
             SLV    + G++++ D+ ++ +     + D      +I    + G+V+ + ++   M 
Sbjct: 484 TISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMA 543

Query: 424 ERHCVP 429
               +P
Sbjct: 544 RDGLLP 549



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+ PN  TY  LV A    G + +   ++  +  +    +   +N +++A+ +AG+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 412 VEKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++    +   M+E  +  P+ +TF +M+      G  E A+ + ++M+
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV 108


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 181/368 (49%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP +E  +  I    +  +W+ A+ I   + +     +R  T+  L+   G     ++A 
Sbjct: 183 KPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSR-STYNNLINACGSSGNWKEAL 241

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SA+       +A S    MK  +  +PD  T +I+I  
Sbjct: 242 NVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKG-THIRPDTTTLNIVIHC 300

Query: 195 CTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
             K  ++D   +I   M     EC+   VT+ +II  Y    + E  E++F+ M+ + G 
Sbjct: 301 LVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMI-AEGL 359

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N++I AY   G   +   ++NE    G + DI +   L  +YGR+    K R 
Sbjct: 360 KPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQ 419

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           + D M++    P +V+YN +I+ +G  G +    +  ++M+  G++PN ++ C+L++A  
Sbjct: 420 IFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACG 479

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           +    +K+D++L   E   + L+T  +N  I +    G+ +K   L+ +M+++    D++
Sbjct: 480 RCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSV 539

Query: 433 TFATMIQA 440
           T+  +I  
Sbjct: 540 TYTVLISG 547



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 172/375 (45%), Gaps = 44/375 (11%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +K +++  A++IF  +R+++   + C     TFT ++ +   C Q E     F +M+++G
Sbjct: 302 VKLRQYDKAIEIFNSMREKK---SECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEG 358

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LKP++  Y AL+ AY   G+ +EA    N++K  +  +PD+                   
Sbjct: 359 LKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQ-NGFRPDI------------------- 398

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                           V+Y ++++ YG+++K  +    F  M +     P++ + N++I 
Sbjct: 399 ----------------VSYTSLLNAYGRSQKPHKARQIFDRM-KRNKLKPNLVSYNALID 441

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AYG++G +    K   E    G++ ++ ++  L  + GR     K+ +V+   + R    
Sbjct: 442 AYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKL 501

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V YN  I +    G  +K    +K M+ + +K +S+TY  L+S   K     +  S +
Sbjct: 502 NTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFM 561

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ +  + L    ++  I AY + G + +    F  MK   C PD +T+  M+ AYNA 
Sbjct: 562 EEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAA 621

Query: 445 GMTEAAQNLENKMIA 459
              E A  L  +M A
Sbjct: 622 ENWEKAYALFEEMEA 636



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 143/332 (43%), Gaps = 36/332 (10%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+    Q G ++        +K+  + +     Y+++I+   + +R D    +  EM   
Sbjct: 121 LIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEW 180

Query: 215 GIECSAVTYNTIIDGYGKAKKF-------EEM--------ESSFSAMVES---------- 249
             +    TYN II+ +G+A ++       ++M         S+++ ++ +          
Sbjct: 181 RCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 240

Query: 250 ---------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                     G  PD+ T N ++SA+ +     K   ++       ++ D  TLNI+   
Sbjct: 241 LNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHC 300

Query: 301 YGRAGMYDKMRSVMDFMQ--KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             +   YDK   + + M+  K    P VVT+  +I  +   G +E  E  F  M   G+K
Sbjct: 301 LVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLK 360

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN ++Y +L+ AY+  G+  +      +++ +    D   +  +++AYG++    K  ++
Sbjct: 361 PNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQI 420

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           F  MK     P+ +++  +I AY + G+   A
Sbjct: 421 FDRMKRNKLKPNLVSYNALIDAYGSNGLLADA 452



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 38/331 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+KI   + +Q+  Q    +   L+   G+C +  +   +       G+K +   Y A +
Sbjct: 452 AIKILREM-EQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAI 510

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +    G  D+A      M+     K D  TY++LI  C K  ++      + E+ +L +
Sbjct: 511 GSCMNVGEYDKAIGLYKSMRK-KKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKL 569

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S   Y++ I  Y K  +  E ES+F+ M +S GC+PD+ T  +M+ AY  + N EK  
Sbjct: 570 PLSKEVYSSAICAYSKQGQIVEAESTFNLM-KSSGCYPDVVTYTAMLDAYNAAENWEKAY 628

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFPTVVTY 329
             + E     +K D      L +S+ + G   ++ S+ + M+++        FF  V   
Sbjct: 629 ALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSAC 688

Query: 330 NIV----------------------------IETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           +I+                            + + GK+G IE M + F KM   G   N 
Sbjct: 689 SILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNL 748

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
            TY  L+     +G   K   +L+ +E++ +
Sbjct: 749 NTYSILLKNLLSSGNWRKYLEVLQWMEDAGI 779



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +      ++    + E      K D++T N +  ++GRAG +    ++M
Sbjct: 152 DIY--NMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIM 209

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  ++SA+   
Sbjct: 210 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSG 269

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNI 432
               K  S    ++ + +  DT   N +I    +    +K  E+F +M+E+   C PD +
Sbjct: 270 AQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVV 329

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF ++I  Y+  G  E  +   N MIA
Sbjct: 330 TFTSIIHLYSVCGQVENCEAAFNMMIA 356


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 176/349 (50%), Gaps = 4/349 (1%)

Query: 117 FTKLMVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T  +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   
Sbjct: 156 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQ 215

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  
Sbjct: 216 MKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 274

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+     S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  
Sbjct: 275 QLEKCFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 333

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +
Sbjct: 334 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN 393

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             + P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +
Sbjct: 394 HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE 453

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           M  L+  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 454 MEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 502



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 72  LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 130

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 189

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 190 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 249

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 250 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 309

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 310 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 369

Query: 436 TMIQA 440
            +I+ 
Sbjct: 370 LLIKG 374



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 2/272 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K ++   A  L   M  +G+ P+V+ +  L+ AYG++G L++ F  +++M
Sbjct: 227 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM 286

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  +  KP+V +Y  ++ +  K  +      IL +M +  +  +A  YN IID Y +   
Sbjct: 287 QE-NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGP 345

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       M +S G  P I T N +I    N   I + E+  N  +   +  D  + N
Sbjct: 346 NDQAFILVEKM-KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 404

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +    G  DK   +   M K     TV TY+ +I   G AG + +ME  ++KM   
Sbjct: 405 TLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQN 464

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            + P++  +  +V AYSK G  +K + + +++
Sbjct: 465 NVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 2/247 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q        +TF  L+   G+  Q E+  ++   M  +GLKP+V  Y ++V+A+ ++G +
Sbjct: 252 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 311

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA + ++DM    D  P+   Y+ +I +  +    D    ++ +M   GI  S VTYN 
Sbjct: 312 PEAVAILDDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 370

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I G     +  E E   +++  +    PD  + N++ISA    GNI+K        +  
Sbjct: 371 LIKGLCNQSQISEAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 429

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+K+ ++T + L    G AG  ++M  +   M +    P+   +NI++E + K G+  K 
Sbjct: 430 GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKA 489

Query: 346 EEYFKKM 352
           E+  K+M
Sbjct: 490 EDLRKEM 496



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 4/246 (1%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +A +YN +I G  +A +  +    F  M E     P+  T N+MI  +   G++E   + 
Sbjct: 14  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
            ++    G+K +  T N+L     RAG   +  +++D M  +   P   TY+I+ +   +
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  + M   F K    G+     T   L++   K G +   + +L+ + N+ ++     
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +N +I+ Y Q G++E     F  MK RH  PD+IT+  +I   N L   E   N ++ ++
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLM 249

Query: 459 AMKENS 464
            M++N 
Sbjct: 250 EMQDNG 255



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 34/293 (11%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+ ++Y+++I    +  R     ++  EM+   +  + +TYNT+IDG+ K    E     
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 243 FSAMV--------------ESGGCH--------------------PDIFTLNSMISAYGN 268
              MV               SG C                     PD FT + +      
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G+ + M   + ++   GV     T +IL     + G       V+  +      PT V 
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I  + + G +E     F +MK R +KP+ ITY +L++   KA  I     +L +++
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++ V      FN +I AYG+ G +EK   +   M+E    P+ +++ +++ A+
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 162/343 (47%), Gaps = 6/343 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F  + Q      +  T   +++ LG   +  +A  LFE +  +G +P    Y AL+  Y 
Sbjct: 279 FLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYV 338

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L +A   +++M+  +  KPD  TYS+LI +     R++    +L EM    +E ++
Sbjct: 339 KTGSLKDAEFVVSEMEK-AGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNS 397

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             Y+ I+  Y   +   E + SF  +  ++S G  PD    N MI  +G    ++     
Sbjct: 398 YVYSRILASY---RDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMAT 454

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +      G++ D  T N L   + ++G ++    +   MQ+R + P + TYNI+I + G+
Sbjct: 455 FERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGE 514

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               E++  +  KM+ +G+ PNSITY +LV  Y K+G        L  ++++     +  
Sbjct: 515 QQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTM 574

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +N +I+AY Q G  E     F  M      P  +   ++I A+
Sbjct: 575 YNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAF 617



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 9/343 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +  +   L      Y AL+ A  ++G +++A + ++ M+
Sbjct: 158 YSILINALGRSEKLYEAFLLSQRQVLTPL-----TYNALIGACARNGDVEKALNLMSKMR 212

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                +PD   YS +I+  T+ ++ D  +++K+  E+    IE      N II G+ KA 
Sbjct: 213 R-DGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAG 271

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                   F AM +S G +P   TL ++I A GNSG   + E  + E    G +   +  
Sbjct: 272 D-PTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAY 330

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y + G       V+  M+K    P   TY+++I+ +  AG  E      K+M+ 
Sbjct: 331 NALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEA 390

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++PNS  Y  ++++Y   G   K   +L+ ++++ V  D  F+N +I  +G+   ++ 
Sbjct: 391 SNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDH 450

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               F  M      PD +T+ T+I  +   G    A+ L  +M
Sbjct: 451 AMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEM 493



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 150/333 (45%), Gaps = 4/333 (1%)

Query: 122 VMLG--KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++LG  K   P +A     +  S+GL P      A++ A G SG   EA +   +++  +
Sbjct: 263 IILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRE-N 321

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             +P    Y+ L+K   K       E +++EM   G++    TY+ +ID Y  A ++E  
Sbjct: 322 GSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESA 381

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                 M E+    P+ +  + ++++Y + G  +K  +   +    GV+ D    N++  
Sbjct: 382 RIVLKEM-EASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMID 440

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           ++G+    D   +  + M      P  VT+N +I    K+G     EE F +M+ RG  P
Sbjct: 441 TFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSP 500

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
              TY  ++++  +     +V   L ++++  ++ ++  +  ++  YG++G      E  
Sbjct: 501 CITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECL 560

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             +K     P +  +  +I AY   G++E A N
Sbjct: 561 EVLKSTGFKPTSTMYNALINAYAQRGLSELAVN 593



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 155/320 (48%), Gaps = 10/320 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT++ L+       + E A ++ + M +  ++P+  VY+ ++++Y   G   ++F  + D
Sbjct: 363 QTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKD 422

Query: 175 MKSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           MKS +  +PD + Y+++I +  K+    H     E++L+E    GI    VT+NT+I+ +
Sbjct: 423 MKS-NGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSE----GIRPDTVTWNTLINCH 477

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K+ +    E  F  M +  G  P I T N MI++ G     E++  + ++    G+  +
Sbjct: 478 CKSGRHNMAEELFGEM-QQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPN 536

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   L   YG++G +      ++ ++   F PT   YN +I  + + G  E     F+
Sbjct: 537 SITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFR 596

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M   G+ P+ +   SL++A+ +     +  ++L+ ++ +++  D   +  ++ A  +  
Sbjct: 597 LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVE 656

Query: 411 DVEKMGELFLTMKERHCVPD 430
             +K+  ++  M    C PD
Sbjct: 657 KFQKVPAVYEEMVTSGCTPD 676


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 178/406 (43%), Gaps = 40/406 (9%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQ--WYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           A+    +  +W+   ++ GLLR+           T+  ++   GK  Q ++A  +   M 
Sbjct: 221 AIKACGRGGQWE---RVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMS 277

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           + GL P    Y   + A G+SG   EA   +  M+S     PDV +Y   IK+C    ++
Sbjct: 278 AKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMES-QGVTPDVISYDAAIKACGGGGQW 336

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM-------------------ESS 242
           +    +L EM+  G+  + + +N+ I   GK  ++E+                     S+
Sbjct: 337 ETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSA 396

Query: 243 FSAMVESGG---------------CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            +A  +SG                  PD  + NS I A G  G  E   +   +    G+
Sbjct: 397 IAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGL 456

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             ++ + NI  ++ G  G + +   ++  M  +   P V+TYN  I+T GK G  EK  +
Sbjct: 457 TPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALD 516

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
              KMK   M P+SITY S ++A SK G   +  ++LR++    +  D   +   I AYG
Sbjct: 517 LLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYG 576

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + G  E+  EL   M  +   P+ IT+ ++I+A    G  E A +L
Sbjct: 577 KNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDL 622



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 179/377 (47%), Gaps = 5/377 (1%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA-SLLFEVMLS 142
           AL EA    KW+ AL I   +++     A   ++T  +   G+  Q E+A  LL E+   
Sbjct: 116 ALREAATTGKWREALGILDEMKEGGVVCA--HSYTTAITTCGRQGQWEKALELLREIPEQ 173

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           +G+ P+V  Y + + A G     + A S + +M    +  PD  +Y+  IK+C +  +++
Sbjct: 174 EGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMAD-REVVPDEISYNSAIKACGRGGQWE 232

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            +  +L EM  +G+   A+TYN++I G GK  +++E  S  + M  + G  P+  + N  
Sbjct: 233 RVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEM-SAKGLTPETISYNMA 291

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I A G SG  ++  +   +    GV  D+ + +   K+ G  G ++    ++D M  R  
Sbjct: 292 IRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGV 351

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  + +N  I   GK G  EK  E  +++   G+ P++ ++ S ++A +K+G   +   
Sbjct: 352 APNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALE 411

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L+++    +  D   +N  I A G+ G  E   EL   M  +   P+ I+    I+A  
Sbjct: 412 LLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACG 471

Query: 443 ALGMTEAAQNLENKMIA 459
             G  +    L  +M A
Sbjct: 472 ERGRWQEGLELLRQMPA 488



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 163/343 (47%), Gaps = 2/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F   +V  GK  Q E+A  L   + + GL P    + + ++A  +SG   EA   + +M 
Sbjct: 358 FNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMP 417

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +    KPD  +Y+  I++C K  ++++  ++  +M   G+  + ++ N  I   G+  ++
Sbjct: 418 A-KRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRW 476

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +E       M  + G  P++ T NS I   G  G  EK      +   + +  D  T N 
Sbjct: 477 QEGLELLRQM-PAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNS 535

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
              +  + G + +  +++  M  +   P V++Y   I+ +GK G  E+  E  ++M  +G
Sbjct: 536 AIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKG 595

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + PN ITY S++ A  + G   K   +L++++ + V  D   +N  ISA G+ G  E+  
Sbjct: 596 LTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEAL 655

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +L   M      PD I++ + I+A NA G  E A  L N M A
Sbjct: 656 DLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGA 698



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 175/372 (47%), Gaps = 7/372 (1%)

Query: 90  KQKKWQLALKIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           +  +W+ A+++   LRQ   Q       ++   +   G   Q E +  L + M   G+ P
Sbjct: 297 RSGRWKEAVEV---LRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAP 353

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           +   + + + A G+ G  ++A   + ++ ++    PD  +++  I +CTK  R+    ++
Sbjct: 354 NTIHFNSAIVACGKGGQWEKAVELLREVTALG-LTPDATSFNSAIAACTKSGRWKEALEL 412

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EM    ++  A++YN+ I+  GK  ++E M       + + G  P++ + N  I A G
Sbjct: 413 LKEMPAKRLKPDAISYNSAIEACGKGGQWE-MALELRRQMPTKGLTPNVISSNIAIRACG 471

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G  ++  +   +    G+  ++ T N   K+ G+ G ++K   ++  M++    P  +
Sbjct: 472 ERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSI 531

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TYN  I    K G  ++     ++M  +G+ P+ I+Y + + AY K G   +   +LRQ+
Sbjct: 532 TYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQM 591

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
               +  +   +N +I A G+ G+ EK  +L   +KE    PD +++   I A    G  
Sbjct: 592 PTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRW 651

Query: 448 EAAQNLENKMIA 459
           E A +L  +M A
Sbjct: 652 EEALDLLREMPA 663



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 165/357 (46%), Gaps = 3/357 (0%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           A+    K  +W+ AL++   +  ++  +    ++   +   GK  Q E A  L   M + 
Sbjct: 396 AIAACTKSGRWKEALELLKEMPAKR-LKPDAISYNSAIEACGKGGQWEMALELRRQMPTK 454

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P+V      + A G+ G   E    +  M +     P+V TY+  IK+C K  +++ 
Sbjct: 455 GLTPNVISSNIAIRACGERGRWQEGLELLRQMPA-QGLTPNVITYNSAIKTCGKGGQWEK 513

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +LA+M  L +   ++TYN+ I    K  +++E  +    M   G   PD+ +  + I
Sbjct: 514 ALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQG-LTPDVISYTAAI 572

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AYG +G  E+  +   +    G+  ++ T N + K+ GR G ++K   ++  +++    
Sbjct: 573 DAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVA 632

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P +++YN+ I   GK G  E+  +  ++M   G+ P+ I+Y S + A +  G   K   +
Sbjct: 633 PDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGL 692

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           L  +    V      ++  I A G+ G  E+   L   M +R     NI+ + +++A
Sbjct: 693 LNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLIVEA 749



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 151/342 (44%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F   +    K  + ++A  L + M +  LKP    Y + + A G+ G  + A      M
Sbjct: 392 SFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQM 451

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     P+V + +I I++C +  R+    ++L +M   G+  + +TYN+ I   GK  +
Sbjct: 452 PT-KGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQ 510

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E+     + M E     PD  T NS I+A    G  ++      E    G+  D+ +  
Sbjct: 511 WEKALDLLAKMKELA-MTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYT 569

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               +YG+ G +++   ++  M  +   P V+TYN VI+  G+ G  EK  +  K++K  
Sbjct: 570 AAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKET 629

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+ ++Y   +SA  K G   +   +LR++    +  D   +   I A    G+ EK 
Sbjct: 630 AVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKA 689

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             L   M      P   +++  I+A    G  E A  L  +M
Sbjct: 690 LGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREM 731



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 6/302 (1%)

Query: 162 SGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECS 219
           +G   EA   +++MK     C    ++Y+  I +C +  +++   ++L E+    G+  +
Sbjct: 123 TGKWREALGILDEMKEGGVVC---AHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPN 179

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
              YN+ I+  G   ++E   S    M +     PD  + NS I A G  G  E++    
Sbjct: 180 VFCYNSAIEACGSGDQWEIAVSLLREMADRE-VVPDEISYNSAIKACGRGGQWERVIGLL 238

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            E   +G+  D  T N +    G+ G + +  SV+  M  +   P  ++YN+ I   G++
Sbjct: 239 REMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRS 298

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  ++  E  ++M+ +G+ P+ I+Y + + A    G       +L ++    V  +T  F
Sbjct: 299 GRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHF 358

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N  I A G+ G  EK  EL   +      PD  +F + I A    G  + A  L  +M A
Sbjct: 359 NSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA 418

Query: 460 MK 461
            +
Sbjct: 419 KR 420



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  +W+ AL +   L++         ++   +   GK  + E+A  L   M ++GL P V
Sbjct: 612 RGGEWEKALDLLKELKETA-VAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDV 670

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT+ + A    G  ++A   +N M       P   +YS+ I++C K  R +    ++ 
Sbjct: 671 ISYTSAIRACNAEGEWEKALGLLNLM-GAHGVSPTATSYSLAIEACGKGGRREEAVCLVR 729

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKK 235
           EM+  G+    ++ + I++  G   K
Sbjct: 730 EMAQRGLSHRNISNSLIVEALGDDAK 755


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 176/349 (50%), Gaps = 4/349 (1%)

Query: 117 FTKLMVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T  +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   
Sbjct: 341 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQ 400

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  
Sbjct: 401 MKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 459

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+     S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  
Sbjct: 460 QLEKCFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 518

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +
Sbjct: 519 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN 578

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             + P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +
Sbjct: 579 HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE 638

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           M  L+  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 639 MEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 687



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 257 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 315

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 316 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 374

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 375 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 434

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 435 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 494

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 495 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 554

Query: 436 TMIQA 440
            +I+ 
Sbjct: 555 LLIKG 559



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 240
           +PD + ++  +++C           +L  M   G    +A +YN +I G  +A +  +  
Sbjct: 161 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 220

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M E     P+  T N+MI  +   G++E   +  ++    G+K +  T N+L   
Sbjct: 221 EVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSG 279

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             RAG   +  +++D M  +   P   TY+I+ +   + G  + M   F K    G+   
Sbjct: 280 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 339

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             T   L++   K G +   + +L+ + N+ ++     +N +I+ Y Q G++E     F 
Sbjct: 340 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 399

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            MK RH  PD+IT+  +I   N L   E   N ++ ++ M++N 
Sbjct: 400 QMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLMEMQDNG 440



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 2/272 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K ++   A  L   M  +G+ P+V+ +  L+ AYG++G L++ F  +++M
Sbjct: 412 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM 471

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  +  KP+V +Y  ++ +  K  +      IL +M +  +  +A  YN IID Y +   
Sbjct: 472 QE-NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGP 530

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       M +S G  P I T N +I    N   I + E+  N  +   +  D  + N
Sbjct: 531 NDQAFILVEKM-KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 589

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +    G  DK   +   M K     TV TY+ +I   G AG + +ME  ++KM   
Sbjct: 590 TLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQN 649

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            + P++  +  +V AYSK G  +K + + +++
Sbjct: 650 NVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 2/247 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q        +TF  L+   G+  Q E+  ++   M  +GLKP+V  Y ++V+A+ ++G +
Sbjct: 437 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 496

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA + ++DM    D  P+   Y+ +I +  +    D    ++ +M   GI  S VTYN 
Sbjct: 497 PEAVAILDDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 555

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I G     +  E E   +++  +    PD  + N++ISA    GNI+K        +  
Sbjct: 556 LIKGLCNQSQISEAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 614

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+K+ ++T + L    G AG  ++M  +   M +    P+   +NI++E + K G+  K 
Sbjct: 615 GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKA 674

Query: 346 EEYFKKM 352
           E+  K+M
Sbjct: 675 EDLRKEM 681


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 180/369 (48%), Gaps = 9/369 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KK   AL+ F L++++  +    +T  +++ +  K  + + A +L+  M    ++ S+  
Sbjct: 160 KKPNEALECFYLIKEK-GFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYT 218

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  +++   + G L +A   I  M+++   KP+V TY+ +I       +F     I   M
Sbjct: 219 FNIMINVLCKEGKLKKAKEFIGHMETLG-VKPNVVTYNTIIHGHCLRGKFQRARVIFQTM 277

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+E    TYN+ I G  K  + EE       M+E GG  P+  T N++I  Y N G+
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLE-GGLVPNAVTYNALIDGYCNKGD 336

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSY---GRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           ++K   + +E    G+ A + T N+   +    GR G  D M   +  M+++   P  VT
Sbjct: 337 LDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNM---IKEMREKGMMPDAVT 393

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           +NI+I  + + G  ++      +M  +G++P  +TY SL+    K   + + D++  +++
Sbjct: 394 HNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQ 453

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              ++ D   FN +I  +   G++++  +L   M     +PD IT+ T++Q Y   G  E
Sbjct: 454 QEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVE 513

Query: 449 AAQNLENKM 457
            A+ L ++M
Sbjct: 514 EARQLLDEM 522



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 157/355 (44%), Gaps = 36/355 (10%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           K+Q A  IF  ++ +   +  C T+   +  L K  + E+AS L   ML  GL P+   Y
Sbjct: 266 KFQRARVIFQTMKDKGL-EPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY 324

Query: 153 TALVSAYGQSGLLDEAFSTINDMKS----------------------VSDCK-------- 182
            AL+  Y   G LD+A++  ++M S                      + D          
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384

Query: 183 ----PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               PD  T++ILI    +         +L EM   GI+ + VTY ++I   GK  + +E
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE 444

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            ++ FS  ++  G  PDI   N++I  +  +GNI++  +   E + M V  D  T N L 
Sbjct: 445 ADALFSK-IQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLM 503

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           + Y R G  ++ R ++D M++R   P  ++YN +I  + K G ++       +M   G  
Sbjct: 504 QGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFD 563

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           P  +TY +L+    K       + +L+++ +  +  D   +  II A     D+E
Sbjct: 564 PTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 279 YNEFNLMGVKADIQT---LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           ++E  L   + D +T    ++L ++Y      ++       ++++ F P + T N ++  
Sbjct: 131 FDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSL 190

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           F K    +     + +M    ++ +  T+  +++   K G + K    +  +E   V  +
Sbjct: 191 FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPN 250

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +N II  +   G  ++   +F TMK++   PD  T+ + I      G  E A  L  
Sbjct: 251 VVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLIC 310

Query: 456 KMI 458
           KM+
Sbjct: 311 KML 313


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 178/395 (45%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ AL +   +  +  Y+     +  L+  + + KQ   A  LF+ M   GL P  
Sbjct: 120 REPDWQRALALLDWINDKALYRPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDR 179

Query: 150 DVYTALVSAYGQSGLLDEA------------------FSTINDM-KSVSD---------- 180
             Y+ L++ +G+ GL D +                  +S + D+ + +SD          
Sbjct: 180 YTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSR 239

Query: 181 -----CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+  Y+ +I    K   F     +L EM    ++   V+Y+T++  Y   +K
Sbjct: 240 LKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQK 299

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S FS M E+  C  D+ T N MI  YG     ++ ++ +     MG++ ++ + N
Sbjct: 300 FVEALSLFSEMNEAK-CPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYN 358

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ +     VVTYN +I  +GK    EK     ++M  R
Sbjct: 359 TLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKR 418

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +   + +++ +S V +D   +  +I AY + G V   
Sbjct: 419 GIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHA 478

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 479 KRLLHELKR----PDNIPRDTAIAILARAGRIEEA 509



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 31/360 (8%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ---TFTKLMV-MLGKCKQPEQASLLFEVMLSDG 144
           +  +K+  AL +F  + +     A+C    T   +M+ + G+   P++A  LF  M   G
Sbjct: 295 VDNQKFVEALSLFSEMNE-----AKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMG 349

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P+V  Y  L+  YG++ L  EA      M+S  D + +V TY+ +I    K    +  
Sbjct: 350 IQPNVISYNTLLRVYGEADLFGEAIHLFRLMQS-KDVQQNVVTYNTMINIYGKTLEHEKA 408

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             ++ EM+  GIE +A+TY+TII  + KA K +     F  +  S G   D     +MI 
Sbjct: 409 TNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKL-RSSGVRIDEVLYQTMIV 467

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK----MRSVMDFMQKR 320
           AY  +G +   ++  +E      + D    +       RAG  ++     R   D  + +
Sbjct: 468 AYERTGLVAHAKRLLHELK----RPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVK 523

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                +  +  +I  F K      + E F+KM+  G  P+S     +++A+ K     K 
Sbjct: 524 ----DISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKA 579

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF--------LTMKERHCVPDNI 432
           D++ RQ+     +        ++S YG   D   +  LF        +  KE H V  +I
Sbjct: 580 DALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASI 639


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 3/287 (1%)

Query: 86  DEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ +KQ   +  AL  F  L++Q  ++    T+T ++  LG+ KQ  + + L + M+ DG
Sbjct: 330 NQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDG 389

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP+   Y  L+ +YG++  L EA +  N M+  + C+PD  TY  LI    K    D+ 
Sbjct: 390 CKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQE-AGCEPDRVTYCTLIDIHAKAGFLDIA 448

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +   M   G+     TY+ II+  GKA         F  MV  G C P++ T N MI+
Sbjct: 449 MDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMIA 507

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  + N E   K Y +    G + D  T +I+ +  G  G  ++   V   MQ++ + P
Sbjct: 508 LHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVP 567

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
               Y ++++ +GKAG+++K  ++++ M   G++PN  T  SL+S +
Sbjct: 568 DEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTF 614



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A   +E  +
Sbjct: 356 KHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMN 415

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 416 VFNQMQEAG-CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL 474

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M  +   P +VT+NI+I    KA + E   + ++ M++ G +P+ 
Sbjct: 475 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 534

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G + + + +  +++  + + D P +  ++  +G+AG+V+K  + +  
Sbjct: 535 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQA 594

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M +    P+  T  +++  +  +     A NL   M+A+
Sbjct: 595 MLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL 633



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T++   G+AK+F E+      MV  G C P+  T N +I +YG +  +++
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDG-CKPNTVTYNRLIHSYGRANYLKE 412

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +N+    G + D  T   L   + +AG  D    +   MQ+    P   TY+++I 
Sbjct: 413 AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAGH+      F +M  +G  PN +T+  +++ ++KA        + R ++N+    
Sbjct: 473 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 532

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +E+   +F  M+ ++ VPD   +  ++  +   G  + A    
Sbjct: 533 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWY 592

Query: 455 NKMI 458
             M+
Sbjct: 593 QAML 596



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 263 ISAYGNSGNIEKMEKWYNEFNLM-------GVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + AY  +  +++M+ + N            G K D  T   +  + GRA  + ++  ++D
Sbjct: 324 MDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLD 383

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P  VTYN +I ++G+A ++++    F +M+  G +P+ +TYC+L+  ++KAG
Sbjct: 384 EMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +     + ++++ + +  DT  ++ II+  G+AG +     LF  M  + C P+ +TF 
Sbjct: 444 FLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 503

Query: 436 TMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            MI  +      E A  L   M    +N+G
Sbjct: 504 IMIALHAKARNYETALKLYRDM----QNAG 529



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + ++ ALK++  + Q   +Q    T++ +M +LG C   E+A  +F  M      P  
Sbjct: 511 KARNYETALKLYRDM-QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDE 569

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  LV  +G++G +D+A+     M   +  +P+V T + L+ +  + HR      +L 
Sbjct: 570 PVYGLLVDLWGKAGNVDKAWQWYQAMLQ-AGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQ 628

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
            M  LG+  S  TY  ++     A+   +M      M  SG  HP
Sbjct: 629 SMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMAVSG--HP 671


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 176/390 (45%), Gaps = 40/390 (10%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           +R   W      T+  L   L K    + A  +FE M SDG+ P+  +   LVS++ + G
Sbjct: 99  IRHSFW------TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKG 152

Query: 164 -------LLDEAF-------------STINDMKSVSD-------------CKPDVYTYSI 190
                  LL ++F             +T+  +  V D             C  D  T++I
Sbjct: 153 KLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNI 211

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI+      + +   ++L  MS  G E   VTYNT+I G+ K+ +  +    F  +    
Sbjct: 212 LIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C PD+ T  SMIS Y  +G + +     ++   +G+     T N+L   Y +AG     
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTA 331

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M     FP VVT+  +I+ + + G + +    +++M  RGM PN+ TY  L++A
Sbjct: 332 EEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
                 ++K   +L Q+ + D+I     +N +I  + +AG V +   +   M+++ C PD
Sbjct: 392 LCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPD 451

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAM 460
            ITF  +I  +   G    A ++ +KM+A+
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAI 481


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 176/349 (50%), Gaps = 4/349 (1%)

Query: 117 FTKLMVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T  +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   
Sbjct: 204 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQ 263

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  
Sbjct: 264 MKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 322

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+     S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  
Sbjct: 323 QLEKCFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 381

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +
Sbjct: 382 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN 441

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             + P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +
Sbjct: 442 HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE 501

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           M  L+  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 502 MEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 550



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 120 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 178

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 237

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 238 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 297

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 298 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 357

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 358 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 417

Query: 436 TMIQA 440
            +I+ 
Sbjct: 418 LLIKG 422



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 37/355 (10%)

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           ++ LG+     +A   F ++ S G +P    +   V A   +G L EA   +  M     
Sbjct: 2   LLSLGRHADVRRA---FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGA 58

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             P+ ++Y+++I    +  R     ++  EM+   +  + +TYNT+IDG+ K    E   
Sbjct: 59  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 118

Query: 241 SSFSAMV--------------ESGGCH--------------------PDIFTLNSMISAY 266
                MV               SG C                     PD FT + +    
Sbjct: 119 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 178

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +G+ + M   + ++   GV     T +IL     + G       V+  +      PT 
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 238

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V YN +I  + + G +E     F +MK R +KP+ ITY +L++   KA  I     +L +
Sbjct: 239 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 298

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++++ V      FN +I AYG+ G +EK   +   M+E    P+ +++ +++ A+
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 353



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 240
           +PD + ++  +++C           +L  M   G    +A +YN +I G  +A +  +  
Sbjct: 24  RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 83

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M E     P+  T N+MI  +   G++E   +  ++    G+K +  T N+L   
Sbjct: 84  EVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSG 142

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             RAG   +  +++D M  +   P   TY+I+ +   + G  + M   F K    G+   
Sbjct: 143 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 202

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             T   L++   K G +   + +L+ + N+ ++     +N +I+ Y Q G++E     F 
Sbjct: 203 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 262

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            MK RH  PD+IT+  +I   N L   E   N ++ ++ M++N 
Sbjct: 263 QMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLMEMQDNG 303



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 2/272 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K ++   A  L   M  +G+ P+V+ +  L+ AYG++G L++ F  +++M
Sbjct: 275 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM 334

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  +  KP+V +Y  ++ +  K  +      IL +M +  +  +A  YN IID Y +   
Sbjct: 335 QE-NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGP 393

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       M +S G  P I T N +I    N   I + E+  N  +   +  D  + N
Sbjct: 394 NDQAFILVEKM-KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 452

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +    G  DK   +   M K     TV TY+ +I   G AG + +ME  ++KM   
Sbjct: 453 TLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQN 512

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            + P++  +  +V AYSK G  +K + + +++
Sbjct: 513 NVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 544



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 2/247 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q        +TF  L+   G+  Q E+  ++   M  +GLKP+V  Y ++V+A+ ++G +
Sbjct: 300 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 359

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA + ++DM    D  P+   Y+ +I +  +    D    ++ +M   GI  S VTYN 
Sbjct: 360 PEAVAILDDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 418

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I G     +  E E   +++  +    PD  + N++ISA    GNI+K        +  
Sbjct: 419 LIKGLCNQSQISEAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKY 477

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+K+ ++T + L    G AG  ++M  +   M +    P+   +NI++E + K G+  K 
Sbjct: 478 GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKA 537

Query: 346 EEYFKKM 352
           E+  K+M
Sbjct: 538 EDLRKEM 544


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 173/339 (51%), Gaps = 5/339 (1%)

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +++ G C    +A  +++ M+S+G+KPS+  Y+AL+ A G+ G   +  + + +MKS+  
Sbjct: 210 LLLPGFC---NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIG- 265

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
            +P++YTY+I I++  +  R D    I  EM   G     +TY  +ID    A K ++ +
Sbjct: 266 LRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAK 325

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             +  M  S    PD  T  +++  +G  G++E +++++NE  + G   D+ T  IL ++
Sbjct: 326 ELYVKMRASSH-SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEA 384

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             ++G  D+   ++D M  +  FP + TYN +I    KA  +++  E  + M+  G+KP 
Sbjct: 385 LCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPT 444

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + +Y   +  Y K+G   K       ++   ++      N  +    + G + +  ++F 
Sbjct: 445 AFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFN 504

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + +    PD++T+  +++ Y+  G  + A  L ++MI+
Sbjct: 505 DLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMIS 543



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM   GK    E     +  M  DG  P V  YT L+ A  +SG +D AF  + D+
Sbjct: 342 TYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDML-DV 400

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     P+++TY+ +I    K  R D   ++L  M  LG++ +A +Y   ID YGK+  
Sbjct: 401 MTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGD 460

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +   +F  M +  G  P I   N+ +     +G I + E  +N+ +  G+  D  T N
Sbjct: 461 PAKAIDTFETM-KKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYN 519

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L K Y +AG  DK   ++  M  +   P V+  N +I T  KAG ++   + F ++K+ 
Sbjct: 520 MLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNL 579

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P  +TY  L++   K G I+K   +   +  S    +T  FN ++    +   V+  
Sbjct: 580 KLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLA 639

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++F  M   +C PD +T+ T+I
Sbjct: 640 LKMFCRMTMMNCNPDVLTYNTII 662



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 171/349 (48%), Gaps = 6/349 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV LG+     +   L E M S GL+P++  YT  + A G++  +D+A+    +
Sbjct: 236 KTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKE 295

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M     C PDV TY++LI +     + D  +++  +M         VTY T++D +GK  
Sbjct: 296 MDD-EGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVG 354

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             E ++  ++ M E  G  PD+ T   +I A   SG++++     +     G+  ++ T 
Sbjct: 355 DLETVKRFWNEM-EVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTY 413

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +     +A   D+   +++ M+     PT  +Y + I+ +GK+G   K  + F+ MK 
Sbjct: 414 NTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKK 473

Query: 355 RGMKPNSITYCSLVSAYSKA--GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           RG+ P SI  C+  S Y+ A  G I + + I   +    +  D+  +N ++  Y +AG +
Sbjct: 474 RGIMP-SIAACN-ASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQI 531

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +K  +L   M  + C PD +   ++I      G  +AA  +  ++  +K
Sbjct: 532 DKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLK 580



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 175/372 (47%), Gaps = 11/372 (2%)

Query: 80   PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
            P+++ L    K+KK   A  +F    +        +++  LM  L      E+A  LFE 
Sbjct: 765  PLIKVL---CKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFED 821

Query: 140  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
            M S G  P+   Y  L+ A+G+S  +++ +   ++M+S   C+P+  T++I+I +  K +
Sbjct: 822  MKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRS-RGCEPNAITHNIIISALVKSN 880

Query: 200  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              +    +  E+       +  TY  +IDG  KA + E+    F  M++  GC P+    
Sbjct: 881  NLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDY-GCGPNSVIY 939

Query: 260  NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            N +I+ +G SG I+   + + +    G++ D+++  IL +     G  D+     + ++ 
Sbjct: 940  NILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKL 999

Query: 320  RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                P  V+YN +I   GK+  +++    F +MK+RG+ P+  TY +L+     AG   K
Sbjct: 1000 TGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAG---K 1056

Query: 380  VDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
            VD  ++  E   ++   P    +N +I  +  +G+ ++   +F  M    C P+  TFA 
Sbjct: 1057 VDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQ 1116

Query: 437  MIQAYNALGMTE 448
            +   Y   G+  
Sbjct: 1117 LPNKYPRAGLVH 1128



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 172/362 (47%), Gaps = 8/362 (2%)

Query: 66   KKVSSKKYKNLWPKPVLEA----LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLM 121
            + V  K  KNL   P LE+    +D  +     + AL++F  ++    +     T+  L+
Sbjct: 780  QNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNF-TYNLLL 838

Query: 122  VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
               GK K+  +   L+  M S G +P+   +  ++SA  +S  L++A     ++ S  D 
Sbjct: 839  DAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMS-GDF 897

Query: 182  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
             P   TY  LI    K  R +   KI  EM   G   ++V YN +I+G+GK+ + +    
Sbjct: 898  SPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACE 957

Query: 242  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
             F  MV+ G   PD+ +   ++     +G I++  +++ E  L G+  D  + N +    
Sbjct: 958  LFKKMVKEG-IRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGL 1016

Query: 302  GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            G++   D+  S+   M+ R   P + TYN +I   G AG ++   + +++++  G++P+ 
Sbjct: 1017 GKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSV 1076

Query: 362  ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK-MGELFL 420
             TY +L+  +S +G   +  S+ +++       +T  F  + + Y +AG V    G +F+
Sbjct: 1077 FTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPFGAVFI 1136

Query: 421  TM 422
             +
Sbjct: 1137 GL 1138



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 164/342 (47%), Gaps = 3/342 (0%)

Query: 120  LMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
            L+ +L K K+   A  +F+    + G+ P+++ Y  L+     S   ++A     DMKS 
Sbjct: 766  LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKS- 824

Query: 179  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            +   P+ +TY++L+ +  K  R + +  + +EM   G E +A+T+N II    K+    +
Sbjct: 825  AGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNK 884

Query: 239  MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                +  ++ SG   P   T   +I     +G  E+  K + E    G   +    NIL 
Sbjct: 885  ALDLYYELM-SGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILI 943

Query: 299  KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              +G++G  D    +   M K    P + +Y I++E     G I++  +YF+++K  G+ 
Sbjct: 944  NGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLD 1003

Query: 359  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            P++++Y  +++   K+  + +  S+  +++N  +  D   +N +I   G AG V+   ++
Sbjct: 1004 PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKM 1063

Query: 419  FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +  ++     P   T+  +I+ ++  G  + A ++  KM+ +
Sbjct: 1064 YEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVV 1105



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 14/269 (5%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  ++  L K ++ ++A  L E M S G+KP+   Y   +  YG+SG   +A  T   
Sbjct: 411 HTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFET 470

Query: 175 MK------SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
           MK      S++ C   +YT +       +  R    E I  ++   G+   +VTYN ++ 
Sbjct: 471 MKKRGIMPSIAACNASLYTLA-------ETGRISEAEDIFNDLHKCGLSPDSVTYNMLMK 523

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            Y KA + ++     S M+ S GC PD+  +NS+I+    +G ++   K +     + + 
Sbjct: 524 CYSKAGQIDKATQLLSEMI-SKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLA 582

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
             + T NIL    G+ G   K   +   M +    P  +T+N +++   K   ++   + 
Sbjct: 583 PTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKM 642

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           F +M      P+ +TY +++    + G I
Sbjct: 643 FCRMTMMNCNPDVLTYNTIIYGLIREGRI 671



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 42/356 (11%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L +  +  +A  +F  +   GL P    Y  L+  Y ++G +D+A   +++M S   C+P
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMIS-KGCEP 548

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV   + LI +  K  R D   K+   +  L +  + VTYN ++ G GK  K  +    F
Sbjct: 549 DVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELF 608

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            +M ESG C P+  T NS++     +  ++   K +    +M    D+ T N +     R
Sbjct: 609 GSMTESG-CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667

Query: 304 AGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNS 361
            G  D   +   F Q K+F  P  VT   +I    + G +E   +   +  H+  ++ NS
Sbjct: 668 EGRID--YAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNS 725

Query: 362 -----ITYCSLVSAYSKAGL--------------------IMKVDSILRQVENSDVILD- 395
                +  C L  A  +  +                    ++KV    ++  ++  + D 
Sbjct: 726 QFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDK 785

Query: 396 ----------TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                        +NC++     +   EK  ELF  MK     P+N T+  ++ A+
Sbjct: 786 FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAH 841



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 34/186 (18%)

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-------EKMEEY------------ 348
           + M  V D MQK+  +  + TY  + +     G I        KM E             
Sbjct: 148 EDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGL 207

Query: 349 ---------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
                          +K+M   GMKP+  TY +L+ A  + G   K+ ++L ++++  + 
Sbjct: 208 IHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLR 267

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +   +   I A G+A  ++    +F  M +  C PD IT+  +I A  A G  + A+ L
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 454 ENKMIA 459
             KM A
Sbjct: 328 YVKMRA 333


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYT 153
           + +K  GLL  +  Y          +++ G CK    ++A+ + E+M  + L P V  Y 
Sbjct: 267 MDMKSRGLLPNRNTYN---------ILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            L++     G ++EAF   ++M+++    PDV +Y+ LI  C ++ +     K+L EMS 
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEMENLK-LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSE 376

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G++ +AVT+N ++  Y K  K ++  ++ + M ESG   PD  T N++I+ Y  +GN+ 
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG-FSPDCVTYNTLINGYCKAGNMG 435

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           +  +  +E     +K D  TLN + ++  R    ++   ++   +KR +F   V+Y  +I
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
             + K G++++  + + +MK + + P+++TY  ++    + G   +  S L ++  S ++
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N I+  Y + GDVEK  +    M E    PD  T   +++     G+ E A  L
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKL 615

Query: 454 ENKMIA 459
            N  ++
Sbjct: 616 FNTWVS 621



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 46/335 (13%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFDL 203
           PS  +    + AY QSG    AF     MK +   +P++ T + L+ S  ++   H    
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLR-LRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             +   +   LGI  +  T+N +I GY    KF++     + M +   C PD  T N+++
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYN-CSPDNVTYNTIL 250

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 G +        +    G+  +  T NIL   Y + G   +  +V++ M +    
Sbjct: 251 DTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 324 PTVVTYNIVIETFGKAGHIE--------------------------------KMEEYFK- 350
           P V TYN++I      G IE                                K+ E FK 
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 351 --KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M  +G+KPN++T+  +V  Y K G +    + + ++E S    D   +N +I+ Y +
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 409 AGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 440
           AG+   MGE F TM E   ++   D++T  T+++ 
Sbjct: 431 AGN---MGEAFRTMDEMGRKNMKMDSVTLNTILRT 462



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 4/342 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVD 150
           +W    + F LL +      +    T  +++   CK+   + AS     M   G  P   
Sbjct: 360 EWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCV 419

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L++ Y ++G + EAF T+++M    + K D  T + ++++  +  + +   K+L+ 
Sbjct: 420 TYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKMDSVTLNTILRTLCREKKLEEAYKLLSS 478

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
               G     V+Y T+I GY K    +     +  M E     P   T N +I      G
Sbjct: 479 ARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE-IIPSTVTYNCIIGGLCQCG 537

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             E+     NE    G+  D  T N +   Y R G  +K     + M +  F P V T N
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I++      G +EK  + F     +G   +++TY +L+++  K G +    ++L ++E  
Sbjct: 598 ILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++  D   +N II+A   +G + +  E    M E+  +PD +
Sbjct: 658 ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQV 699



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P    L++ I AY  SG      + + +   + ++ ++ T N L  S  R   Y    SV
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR---YPSSHSV 189

Query: 314 MDFMQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             F ++ F         P V T+NIVI  +      +   E+   M      P+++TY +
Sbjct: 190 -SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++    K G +     +L  +++  ++ +   +N ++  Y + G +++   +   M + +
Sbjct: 249 ILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +PD  T+  +I      G  E A  L ++M  +K
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 176/390 (45%), Gaps = 40/390 (10%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           +R   W      T+  L   L K    + A  +FE M SDG+ P+  +   LVS++ + G
Sbjct: 99  IRHSFW------TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKG 152

Query: 164 -------LLDEAF-------------STINDMKSVSD-------------CKPDVYTYSI 190
                  LL ++F             +T+  +  V D             C  D  T++I
Sbjct: 153 KLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNI 211

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI+      + +   ++L  MS  G E   VTYNT+I G+ K+ +  +    F  +    
Sbjct: 212 LIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C PD+ T  SMIS Y  +G + +     ++   +G+     T N+L   Y +AG     
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTA 331

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M     FP VVT+  +I+ + + G + +    +++M  RGM PN+ TY  L++A
Sbjct: 332 EEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
                 ++K   +L Q+ + D+I     +N +I  + +AG V +   +   M+++ C PD
Sbjct: 392 LCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPD 451

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAM 460
            ITF  +I  +   G    A ++ +KM+A+
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAI 481



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 145/354 (40%), Gaps = 5/354 (1%)

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
            LL Q    +  C     L+  L K  + E A  LF+  L          +  L+     
Sbjct: 159 ALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCG 218

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-- 219
            G  ++A   +  M     C+PD+ TY+ LI+   K +  +   ++  ++   G  CS  
Sbjct: 219 VGKAEKALELLGVMSGFG-CEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS-GSVCSPD 276

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            VTY ++I GY KA K  E  S    M+  G  +P   T N ++  Y  +G +   E+  
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLG-IYPTNVTFNVLVDGYAKAGEMLTAEEIR 335

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            +    G   D+ T   L   Y R G   +   + + M  R  FP   TY+I+I      
Sbjct: 336 GKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNE 395

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             + K  E   ++  + + P    Y  ++  + KAG + + + I+ ++E      D   F
Sbjct: 396 NRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITF 455

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +I  +   G + +   +F  M    C PD IT ++++      GM + A +L
Sbjct: 456 TILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 178/369 (48%), Gaps = 9/369 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++   A K F +++++     + +T   ++ +  K  + E A +L+  M    +  +V  
Sbjct: 171 RRADEAFKCFYMMKEKGIV-PKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYT 229

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  +V+   + G L +A   I  M+ +   KP+V +Y+ +I   +     +   +IL  M
Sbjct: 230 FNIMVNVLCKEGKLKKAREFIGFMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDAM 288

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              GIE  + TY ++I G  K  + EE    F  MVE G   P+  T N++I  Y N G+
Sbjct: 289 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG-LVPNAVTYNTLIDGYCNKGD 347

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSY---GRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +E+   + +E    G+   + T N+L  +    GR G  D M   +  M+K+   P  +T
Sbjct: 348 LERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM---IKEMRKKGIIPDAIT 404

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+I  + + G+ +K  +   +M  +G++P  +TY SL+   S+   + + D +  ++ 
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 464

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +  V  D   FN ++  +   G+VE+   L   M  +   PD +TF T++Q     G  E
Sbjct: 465 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVE 524

Query: 449 AAQNLENKM 457
            A+ L ++M
Sbjct: 525 EARMLLDEM 533



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 11/382 (2%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W L  ++F L      Y     TF  ++ +L K  + ++A      M   G KP+V  Y 
Sbjct: 212 WVLYAEMFRLRISSTVY-----TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYN 266

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++  Y   G ++ A   ++ M+ V   +PD YTY  LI    K  R +    +  +M  
Sbjct: 267 TIIHGYSSRGNIEGARRILDAMR-VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 325

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G+  +AVTYNT+IDGY      E   S    MV+ G   P + T N ++ A    G + 
Sbjct: 326 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG-IMPSVSTYNLLVHALFMEGRMG 384

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           + +    E    G+  D  T NIL   Y R G   K   + + M  +   PT VTY  +I
Sbjct: 385 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
               +   +++ ++ F+K+  +G+ P+ I + ++V  +   G + +   +L++++   V 
Sbjct: 445 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVP 504

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   FN ++    + G VE+   L   MK R   PD+I++ T+I  Y   G  + A  +
Sbjct: 505 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 564

Query: 454 ENKMIAMKEN----SGKKLIQC 471
            ++M+++  N    +   LI+C
Sbjct: 565 RDEMLSIGFNPTLLTYNALIKC 586



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 165/365 (45%), Gaps = 26/365 (7%)

Query: 115 QTFTKLMVMLGKCKQPEQA-SLLFEVM---------LSDGLKPSVD--------VYTALV 156
           +++   +V+L +   P+ A  LL +VM         L D L  S D        V+  LV
Sbjct: 105 KSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLV 164

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               +    DEAF     MK      P + T + ++    K +R ++   + AEM  L I
Sbjct: 165 RVCCELRRADEAFKCFYMMKE-KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRI 223

Query: 217 ECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             +  T+N +++     GK KK  E    F   +E  G  P++ + N++I  Y + GNIE
Sbjct: 224 SSTVYTFNIMVNVLCKEGKLKKARE----FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 279

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
              +  +   + G++ D  T   L     + G  ++   + D M +    P  VTYN +I
Sbjct: 280 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + +   G +E+   Y  +M  +G+ P+  TY  LV A    G + + D +++++    +I
Sbjct: 340 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 399

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I+ Y + G+ +K  +L   M  +   P ++T+ ++I   +     + A +L
Sbjct: 400 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 459

Query: 454 ENKMI 458
             K++
Sbjct: 460 FEKIL 464



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 137/328 (41%), Gaps = 74/328 (22%)

Query: 115 QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            ++T   ++ G CK+   E+AS LF+ M+  GL P+   Y  L+  Y   G L+ AFS  
Sbjct: 296 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 355

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-- 230
           ++M       P V TY++L+ +     R    + ++ EM   GI   A+TYN +I+GY  
Sbjct: 356 DEMVK-KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 414

Query: 231 -GKAKK--------------------------------FEEMESSFSAMVESGGCHPDIF 257
            G AKK                                 +E +  F  +++ G   PD+ 
Sbjct: 415 CGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG-VSPDVI 473

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             N+M+  +  +GN+E+      E +   V  D  T N L +   R G  ++ R ++D M
Sbjct: 474 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 533

Query: 318 QKRF-----------------------------------FFPTVVTYNIVIETFGKAGHI 342
           ++R                                    F PT++TYN +I+   K    
Sbjct: 534 KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 593

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           +  EE  K+M ++G+ P+  TY SL+  
Sbjct: 594 DLAEELLKEMVNKGISPDDSTYLSLIEG 621



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 122/273 (44%), Gaps = 1/273 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            + +L++ C +  R D   K    M   GI     T N ++  + K  + E     ++ M
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
                    ++T N M++     G ++K  ++      +G K ++ + N +   Y   G 
Sbjct: 219 FRLR-ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 277

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            +  R ++D M+ +   P   TY  +I    K G +E+    F KM   G+ PN++TY +
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+  Y   G + +  S   ++    ++     +N ++ A    G + +  ++   M+++ 
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 397

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +PD IT+  +I  Y+  G  + A +L N+M++
Sbjct: 398 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLS 430



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           + F LL++           T   +M G+C++   E+A +L + M   G+KP    Y  L+
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 549

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S YG+ G + +AF   ++M S+    P + TY+ LIK   K    DL E++L EM   GI
Sbjct: 550 SGYGRRGDIKDAFRVRDEMLSIG-FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 608

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESS 242
                TY ++I+G G      E  +S
Sbjct: 609 SPDDSTYLSLIEGMGNVDTLVEDNAS 634


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 177/395 (44%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L I   + ++  Y      +  ++  + + KQ E A  LF+ M    L    
Sbjct: 135 RESDWQRSLAILDWINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADR 194

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L++ +G+ G+ D A S +  M+       D+  YS LI+   K   +     I +
Sbjct: 195 YTYSTLITYFGKEGMFDAALSWLQKMEQ-DRVSGDLVLYSNLIELSRKLCDYSKAISIFS 253

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEME---------------SSFSAMV------- 247
            +   GI    V YNT+I+ +GKAK F E                  S+S ++       
Sbjct: 254 RLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENE 313

Query: 248 ------------ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                       +   C  D+ T N MI  YG    +++ ++ +     +G++ ++ + N
Sbjct: 314 KFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYN 373

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + + YG A ++ +   +   MQ++     VVTYN +I+ +GK    EK     + M+ R
Sbjct: 374 TILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKR 433

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +   + +++ +S   +D   +  +I AY +AG V   
Sbjct: 434 GIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHA 493

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K+    PDNI   T I      G  E A
Sbjct: 494 KRLLHELKQ----PDNIPRTTAITILAKAGRIEEA 524



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 191/443 (43%), Gaps = 75/443 (16%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK----------CKQPEQ- 132
            L   ++ K+W+LA  +F  +RQ+     R  T++ L+   GK           ++ EQ 
Sbjct: 165 VLRNVLRAKQWELAHGLFDEMRQRALAADRY-TYSTLITYFGKEGMFDAALSWLQKMEQD 223

Query: 133 ------------------------ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
                                   A  +F  +   G+ P +  Y  +++ +G++ L  EA
Sbjct: 224 RVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGKAKLFREA 283

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              + +M++V D  PD  +YS L+    +  +F     +++EM  +       T N +ID
Sbjct: 284 RFLLKEMRAV-DVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMID 342

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-- 286
            YG+    +E +  F  M    G  P++ + N+++  YG +   E   +  + F LM   
Sbjct: 343 VYGQLDMVKEADRLFWRM-RKIGIEPNVVSYNTILRVYGEA---ELFGEAIHLFRLMQRK 398

Query: 287 -VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            +K ++ T N + K YG+   ++K  +++  MQKR   P  +TY+ +I  +GKAG +++ 
Sbjct: 399 EIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRS 458

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI------------ 393
              F+K++  G + + + Y +++ AY KAGL+     +L +++  D I            
Sbjct: 459 AMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRTTAITILAKA 518

Query: 394 -------------------LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
                               D   F C+I  + +    + + E+F  M+     P++   
Sbjct: 519 GRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVI 578

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           A ++ AY  L   + A  L  +M
Sbjct: 579 ALVLNAYGKLRDFDTADALYMEM 601



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 14/316 (4%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+    ++A  LF  M   G++P+V  Y  ++  YG++ L  EA      M+   + K +
Sbjct: 345 GQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KEIKQN 403

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ +IK   K    +    ++ +M   GIE +A+TY+TII  +GKA K +     F 
Sbjct: 404 VVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQ 463

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            +  S G   D     +MI AY  +G +   ++  +E            + IL K    A
Sbjct: 464 KL-RSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRTTAITILAK----A 518

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G  ++   V            +  +  +I+ F +    + + E F+KM++ G  PNS   
Sbjct: 519 GRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVI 578

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF----- 419
             +++AY K       D++  +++    +        ++S YG   D +++  LF     
Sbjct: 579 ALVLNAYGKLRDFDTADALYMEMQEEGCVFTDEVHFQMLSLYGARNDYKRLESLFERLDS 638

Query: 420 ---LTMKERHCVPDNI 432
              +  KE H V  +I
Sbjct: 639 DPNINKKELHLVVASI 654



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 302 GRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
            R   + +  +++D++ ++  + P+V  YN+V+    +A   E     F +M+ R +  +
Sbjct: 134 SRESDWQRSLAILDWINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAAD 193

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             TY +L++ + K G+     S L+++E   V  D   ++ +I    +  D  K   +F 
Sbjct: 194 RYTYSTLITYFGKEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFS 253

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +K     PD + + TMI  +    +   A+ L  +M A+
Sbjct: 254 RLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAV 293


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 178/369 (48%), Gaps = 9/369 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++   A K F +++++     + +T   ++ +  K  + E A +L+  M    +  +V  
Sbjct: 193 RRADEAFKCFYMMKEKGIV-PKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYT 251

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  +V+   + G L +A   I  M+ +   KP+V +Y+ +I   +     +   +IL  M
Sbjct: 252 FNIMVNVLCKEGKLKKAREFIGFMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDAM 310

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              GIE  + TY ++I G  K  + EE    F  MVE G   P+  T N++I  Y N G+
Sbjct: 311 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG-LVPNAVTYNTLIDGYCNKGD 369

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSY---GRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +E+   + +E    G+   + T N+L  +    GR G  D M   +  M+K+   P  +T
Sbjct: 370 LERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM---IKEMRKKGIIPDAIT 426

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+I  + + G+ +K  +   +M  +G++P  +TY SL+   S+   + + D +  ++ 
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 486

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +  V  D   FN ++  +   G+VE+   L   M  +   PD +TF T++Q     G  E
Sbjct: 487 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVE 546

Query: 449 AAQNLENKM 457
            A+ L ++M
Sbjct: 547 EARMLLDEM 555



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 11/382 (2%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W L  ++F L      Y     TF  ++ +L K  + ++A      M   G KP+V  Y 
Sbjct: 234 WVLYAEMFRLRISSTVY-----TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYN 288

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++  Y   G ++ A   ++ M+ V   +PD YTY  LI    K  R +    +  +M  
Sbjct: 289 TIIHGYSSRGNIEGARRILDAMR-VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 347

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G+  +AVTYNT+IDGY      E   S    MV+ G   P + T N ++ A    G + 
Sbjct: 348 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG-IMPSVSTYNLLVHALFMEGRMG 406

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           + +    E    G+  D  T NIL   Y R G   K   + + M  +   PT VTY  +I
Sbjct: 407 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
               +   +++ ++ F+K+  +G+ P+ I + ++V  +   G + +   +L++++   V 
Sbjct: 467 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVP 526

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   FN ++    + G VE+   L   MK R   PD+I++ T+I  Y   G  + A  +
Sbjct: 527 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 586

Query: 454 ENKMIAMKEN----SGKKLIQC 471
            ++M+++  N    +   LI+C
Sbjct: 587 RDEMLSIGFNPTLLTYNALIKC 608



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 165/365 (45%), Gaps = 26/365 (7%)

Query: 115 QTFTKLMVMLGKCKQPEQA-SLLFEVM---------LSDGLKPSVD--------VYTALV 156
           +++   +V+L +   P+ A  LL +VM         L D L  S D        V+  LV
Sbjct: 127 KSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLV 186

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               +    DEAF     MK      P + T + ++    K +R ++   + AEM  L I
Sbjct: 187 RVCCELRRADEAFKCFYMMKE-KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRI 245

Query: 217 ECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             +  T+N +++     GK KK  E    F   +E  G  P++ + N++I  Y + GNIE
Sbjct: 246 SSTVYTFNIMVNVLCKEGKLKKARE----FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 301

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
              +  +   + G++ D  T   L     + G  ++   + D M +    P  VTYN +I
Sbjct: 302 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + +   G +E+   Y  +M  +G+ P+  TY  LV A    G + + D +++++    +I
Sbjct: 362 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 421

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I+ Y + G+ +K  +L   M  +   P ++T+ ++I   +     + A +L
Sbjct: 422 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 481

Query: 454 ENKMI 458
             K++
Sbjct: 482 FEKIL 486



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 137/328 (41%), Gaps = 74/328 (22%)

Query: 115 QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            ++T   ++ G CK+   E+AS LF+ M+  GL P+   Y  L+  Y   G L+ AFS  
Sbjct: 318 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 377

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-- 230
           ++M       P V TY++L+ +     R    + ++ EM   GI   A+TYN +I+GY  
Sbjct: 378 DEMVK-KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 436

Query: 231 -GKAKK--------------------------------FEEMESSFSAMVESGGCHPDIF 257
            G AKK                                 +E +  F  +++ G   PD+ 
Sbjct: 437 CGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG-VSPDVI 495

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             N+M+  +  +GN+E+      E +   V  D  T N L +   R G  ++ R ++D M
Sbjct: 496 MFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 555

Query: 318 QKRF-----------------------------------FFPTVVTYNIVIETFGKAGHI 342
           ++R                                    F PT++TYN +I+   K    
Sbjct: 556 KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 615

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           +  EE  K+M ++G+ P+  TY SL+  
Sbjct: 616 DLAEELLKEMVNKGISPDDSTYLSLIEG 643



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 122/273 (44%), Gaps = 1/273 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            + +L++ C +  R D   K    M   GI     T N ++  + K  + E     ++ M
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
                    ++T N M++     G ++K  ++      +G K ++ + N +   Y   G 
Sbjct: 241 FRLR-ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 299

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            +  R ++D M+ +   P   TY  +I    K G +E+    F KM   G+ PN++TY +
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+  Y   G + +  S   ++    ++     +N ++ A    G + +  ++   M+++ 
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 419

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +PD IT+  +I  Y+  G  + A +L N+M++
Sbjct: 420 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLS 452



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           + F LL++           T   +M G+C++   E+A +L + M   G+KP    Y  L+
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S YG+ G + +AF   ++M S+    P + TY+ LIK   K    DL E++L EM   GI
Sbjct: 572 SGYGRRGDIKDAFRVRDEMLSIG-FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 630

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESS 242
                TY ++I+G G      E  +S
Sbjct: 631 SPDDSTYLSLIEGMGNVDTLVEDNAS 656


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 39/380 (10%)

Query: 97  ALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           ALKIF G +++   +     T+  L+    K  + ++A  + + M+S+ L P V  Y +L
Sbjct: 64  ALKIFDGAVKR--GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSL 121

Query: 156 VSAYGQSGLLDEA---------------FSTI-----NDMKSVSDC------------KP 183
           V+   ++G +DEA               +ST+      +++ VS+             +P
Sbjct: 122 VNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEP 181

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V TY+ILI    K  R +   ++ + +   G+E  A+TY   IDG  KA + E+     
Sbjct: 182 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLML 241

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E G C PD+ + N++I+       +++ E   +     G   +  + N L     R
Sbjct: 242 KDMDEKG-CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---GHIEKMEEYFKKMKHRGMKPN 360
           AG + K  +    M KR   PTVVTYNI+++   KA   G I++    F  M  +G  P+
Sbjct: 301 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 360

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY +L+    KAG +     +L  +E    I +   +N +IS       V++  ELF+
Sbjct: 361 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFV 420

Query: 421 TMKERHCVPDNITFATMIQA 440
            M E+ CVPD IT+ T+I A
Sbjct: 421 AMVEKGCVPDTITYGTIISA 440



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G  P+   Y AL+S     G + +A +    M   +   PDV TY+ L+    K  
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVG 59

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             D   KI       G     VTYN +I+G+ KA K +E +     MV S    PD+ T 
Sbjct: 60  ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV-SENLVPDVVTY 118

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ- 318
           NS+++    +G ++       E  ++ V       N++T S   +G+  ++R V + ++ 
Sbjct: 119 NSLVNGLCKNGRVD-------EARMLIVDKGFSP-NVITYSTLISGLCRELRGVSEALKL 170

Query: 319 -----KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
                K+ + P V TYNI+I+   K   + +  E F  +   G++P++ITY   +    K
Sbjct: 171 FGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 230

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           AG +     +L+ ++    + D    N +I+   +   V++   L   M+ + C P+ I+
Sbjct: 231 AGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAIS 290

Query: 434 FATMI 438
           F T+I
Sbjct: 291 FNTLI 295



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 165/391 (42%), Gaps = 37/391 (9%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           +R+  ++  R  T+  L+  L    +   A  L+E M+  G  P V  Y  L+  + + G
Sbjct: 1   MRKHGFWPNRI-TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVG 59

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
            LDEA   I D        PDV TY+ LI    K  + D  ++IL  M    +    VTY
Sbjct: 60  ELDEALK-IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTY 118

Query: 224 NTIIDGYGKAKKFEE-----MESSFS------AMVESGGCH------------------- 253
           N++++G  K  + +E     ++  FS      + + SG C                    
Sbjct: 119 NSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQG 178

Query: 254 --PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P++ T N +I        + +  + ++     G++ D  T  +      +AG  +   
Sbjct: 179 YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDAL 238

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M ++   P VV++N VI    K   +++ E     M+ +G  PN+I++ +L+   
Sbjct: 239 LMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQ 298

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA---GDVEKMGELFLTMKERHCV 428
            +AG   K  +  +++    V      +N ++    +A   G +++   LF  M E+  V
Sbjct: 299 CRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV 358

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           PD +T++ +I      G  + A+ L   M A
Sbjct: 359 PDVVTYSALIDGLGKAGKLDDARRLLGAMEA 389


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 176/349 (50%), Gaps = 4/349 (1%)

Query: 117 FTKLMVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T  +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   
Sbjct: 337 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQ 396

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  
Sbjct: 397 MKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTG 455

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+     S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  
Sbjct: 456 QLEKCFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 514

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +
Sbjct: 515 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN 574

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             + P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +
Sbjct: 575 HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIE 634

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           M  L+  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 635 MEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 683



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 253 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 311

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 370

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 371 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 430

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 431 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 490

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 491 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 550

Query: 436 TMIQA 440
            +I+ 
Sbjct: 551 LLIKG 555



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 128/284 (45%), Gaps = 5/284 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 240
           +PD + ++  +++C           +L  M   G    +A +YN +I G  +A +  +  
Sbjct: 157 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 216

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M E     P+  T N+MI  +   G++E      ++    G+K +  T N+L   
Sbjct: 217 EVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSG 275

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             RAG   +  +++D M  +   P   TY+I+ +   + G  + M   F K    G+   
Sbjct: 276 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIG 335

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             T   L++   K G +   + +L+ + N+ ++     +N +I+ Y Q G++E     F 
Sbjct: 336 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 395

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            MK RH  PD+IT+  +I   N L   E   N ++ ++ M++N 
Sbjct: 396 QMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLMEMQDNG 436


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 1/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    +QA+ + E M + G +P +  Y  L +   Q+G +DEAF   ++M
Sbjct: 281 TYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEM 340

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +    PDV TY+ L+ +C K  R      +L EM   G++ S VT+N I+ G  +  +
Sbjct: 341 EQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQ 400

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE       M E G   PD+ T N++I A   +GN+ K     +E    G+K D  TLN
Sbjct: 401 LEEALGRLEMMTEEG-LTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLN 459

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  +   Y++   ++    +R F P  V+Y  V+  + K    E     + +M  R
Sbjct: 460 TLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKR 519

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+  TY +L+   S  G + +    L ++    ++ D   +N II AY + GD+EK 
Sbjct: 520 KLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKA 579

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +    M E    PD +T  T++      G  E A  L
Sbjct: 580 FQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKL 617



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 177/381 (46%), Gaps = 5/381 (1%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE-QASL-LFEVML 141
           AL    + +   LA ++    R++   +   Q    ++  L +      QASL  F  ++
Sbjct: 142 ALSTYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLI 201

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           +  L P+   +  LV  +   G L +A ST++ M+      PD  TY+ L+ +  +    
Sbjct: 202 ALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFG-LSPDAVTYNTLLNAHCRKGML 260

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                +LA M   GI  +  TYNT++  Y +    ++      AM  + G  PD++T N 
Sbjct: 261 GEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMT-AFGFEPDLWTYNV 319

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           + +    +G +++  K  +E   +G V  D+ T N L  +  +        ++++ M+++
Sbjct: 320 LAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREK 379

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
               ++VT+NI+++   + G +E+     + M   G+ P+ ITY +L+ A  KAG + K 
Sbjct: 380 GVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKA 439

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             ++ ++  S + +DT   N ++    +    E+  EL     +R  VPD +++ T++ A
Sbjct: 440 FVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAA 499

Query: 441 YNALGMTEAAQNLENKMIAMK 461
           Y      E A  L ++MI  K
Sbjct: 500 YFKEYKPEPALCLWDEMIKRK 520



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 162/390 (41%), Gaps = 18/390 (4%)

Query: 75  NLWPKPVLEA-------LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC 127
           +LW   VL A       +DEA K K     L I               T+  L+    KC
Sbjct: 313 DLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVS---------PDVVTYNTLVDACFKC 363

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           ++   A  L E M   G+K S+  +  +V    + G L+EA   + +M +     PDV T
Sbjct: 364 QRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRL-EMMTEEGLTPDVIT 422

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ LI +  K         ++ EM   G++    T NT++    K K++EE E    A  
Sbjct: 423 YNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPP 482

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           + G   PD  +  ++++AY      E     ++E     +   I T N L K     G  
Sbjct: 483 QRGFV-PDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKL 541

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +    ++ + +    P   TYNI+I  + K G +EK  ++  KM     KP+ +T  +L
Sbjct: 542 TEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTL 601

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++     G + K   +          +D   +N +I A  +  DV+     F  M+ R  
Sbjct: 602 MNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGL 661

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKM 457
            PD  T+  ++ A +  G +  AQ + +K+
Sbjct: 662 QPDVFTYNVLLSALSEAGRSVEAQKMLHKL 691



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 3/318 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P    Y  L++A+ + G+L EA + +  MK      P   TY+ L+ +  +      
Sbjct: 239 GLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKK-EGIVPTRATYNTLVSAYARLGWIKQ 297

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              ++  M+  G E    TYN +  G  +A K +E       M + G   PD+ T N+++
Sbjct: 298 ATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLV 357

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A               E    GVK+ + T NI+ K   R G  ++    ++ M +    
Sbjct: 358 DACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLT 417

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V+TYN +I+   KAG++ K      +M   G+K ++ T  +L+    K     + + +
Sbjct: 418 PDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEEL 477

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LR       + D   +  +++AY +    E    L+  M +R   P   T+ T+I+  + 
Sbjct: 478 LRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLST 537

Query: 444 LG-MTEAAQNLENKMIAM 460
           +G +TEA   L N+++ M
Sbjct: 538 MGKLTEAIDKL-NELMEM 554



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 154/350 (44%), Gaps = 39/350 (11%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVD 150
           K Q +     LL + +    +    T  +++ G C+  Q E+A    E+M  +GL P V 
Sbjct: 362 KCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVI 421

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA- 209
            Y  L+ A  ++G + +AF  +++M   S  K D +T + L+ +  K  R++  E++L  
Sbjct: 422 TYNTLIDASCKAGNVAKAFVLMDEMVR-SGLKMDTFTLNTLLYNLCKEKRYEEAEELLRA 480

Query: 210 ---------EMSYLGIEC-------------------------SAVTYNTIIDGYGKAKK 235
                    E+SY  +                           S  TYNT+I G     K
Sbjct: 481 PPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGK 540

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E     + ++E G   PD  T N +I AY   G++EK  +++N+      K D+ T N
Sbjct: 541 LTEAIDKLNELMEMGLV-PDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCN 599

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L       G  +K   + +   ++     V+TYN +I+   K   ++    +F  M+ R
Sbjct: 600 TLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVR 659

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           G++P+  TY  L+SA S+AG  ++   +L ++  S  +    F+  I S+
Sbjct: 660 GLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSS 709



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 43/322 (13%)

Query: 90  KQKKWQLALKIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           K+K+++ A +   LLR   Q+ +     ++  +M    K  +PE A  L++ M+   L P
Sbjct: 467 KEKRYEEAEE---LLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTP 523

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           S+  Y  L+      G L EA   +N++  +    PD  TY+I+I +  K    +   + 
Sbjct: 524 SISTYNTLIKGLSTMGKLTEAIDKLNELMEMG-LVPDDTTYNIIIHAYCKEGDLEKAFQF 582

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             +M     +   VT NT+++G     + E+    F + VE G    D+ T N++I A  
Sbjct: 583 HNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGK-KVDVITYNTLIQALC 641

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK------RF 321
              +++   +++ +  + G++ D+ T N+L  +   AG   + + ++  + +      RF
Sbjct: 642 KDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRF 701

Query: 322 FFPTV------------------------------VTYNIVIETFGKAGHIEKMEEYFKK 351
           F+P++                               +YN  I+     G +++ +    +
Sbjct: 702 FYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDE 761

Query: 352 MKHRGMKPNSITYCSLVSAYSK 373
           M  +GM  ++ TY +L+    K
Sbjct: 762 MMQKGMSVDNSTYITLMEGLIK 783


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 39/395 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L +   +     Y      +  ++  + + KQ + A  LF+ M +  L P  
Sbjct: 83  RESDWQRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDR 142

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------------- 177
             Y+ L++ +G++G+ D +   +  M+                                 
Sbjct: 143 YTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMR 202

Query: 178 --VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   PD+  Y+ +I    K   F   + ++ EM  +G+    V+Y+T++  Y + +K
Sbjct: 203 LKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEK 262

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S F+ M E+  C  D+ T N MI  YG     ++ ++ +     MG++ ++ + N
Sbjct: 263 FVEALSVFAEMNEAK-CPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYN 321

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG   ++ +   +   MQK+     VVTYN +I+ +GK+   EK     ++M++R
Sbjct: 322 TLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNR 381

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + KAG + +   + +++ +S V +D   +  +I AY ++G V   
Sbjct: 382 GIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHA 441

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PD+I   T I+     G  E A
Sbjct: 442 KRLLHELKH----PDSIPRETAIKILARAGRIEEA 472



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 175/389 (44%), Gaps = 43/389 (11%)

Query: 107 QQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           QQ  Q R       ++ L+ +  K     +A  +F  +   G+ P +  Y ++++ +G++
Sbjct: 166 QQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKA 225

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
            L  EA   + +M+ V    PD  +YS L+    +  +F     + AEM+         T
Sbjct: 226 KLFREAKLLMKEMREVG-VMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTT 284

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
            N +ID YG+    +E +  F +M    G  P++ + N+++  YG +   E   +  + F
Sbjct: 285 CNVMIDVYGQLDMAKEADRLFWSM-RKMGIEPNVVSYNTLLRVYGET---ELFGEAIHLF 340

Query: 283 NLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            LM    ++ ++ T N + K YG++  ++K  ++M  MQ R   P  +TY+ +I  +GKA
Sbjct: 341 RLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKA 400

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL----- 394
           G +++    F+K++  G++ + + Y +++ AY ++GL+     +L ++++ D I      
Sbjct: 401 GKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAI 460

Query: 395 --------------------------DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
                                     D   F C++  + +      + E+F  M+     
Sbjct: 461 KILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYF 520

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
           PD+   A ++ AY  L   E A  L  +M
Sbjct: 521 PDSNVIALVLNAYGKLHEFEKADALYKEM 549



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 147/337 (43%), Gaps = 34/337 (10%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +VS   +      + + ++ +  ++   P V+ Y++++++  +  ++D    +  EM   
Sbjct: 77  MVSVISRESDWQRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNR 136

Query: 215 GIECSAVTYNTIIDGYGKAKKFE-------EMESS--------FSAMVE----------- 248
            +     TY+T+I  +GKA  F+       +ME          +S ++E           
Sbjct: 137 ALAPDRYTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKA 196

Query: 249 --------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                     G  PD+   NSMI+ +G +    + +    E   +GV  D  + + L   
Sbjct: 197 ISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSV 256

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y     + +  SV   M +      + T N++I+ +G+    ++ +  F  M+  G++PN
Sbjct: 257 YVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPN 316

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+  Y +  L  +   + R ++  D+  +   +N +I  YG++ + EK   L  
Sbjct: 317 VVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQ 376

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M+ R   P+ IT++T+I  +   G  + A  L  K+
Sbjct: 377 EMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKL 413



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 153/356 (42%), Gaps = 23/356 (6%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ-TFTKLMVML---GKCKQPEQASLLFEVMLSDG 144
           ++ +K+  AL +F      +  +A+C    T   VM+   G+    ++A  LF  M   G
Sbjct: 258 VENEKFVEALSVFA-----EMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMG 312

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P+V  Y  L+  YG++ L  EA      M+   D + +V TY+ +IK   K    +  
Sbjct: 313 IEPNVVSYNTLLRVYGETELFGEAIHLFRLMQK-KDIEQNVVTYNTMIKVYGKSLEHEKA 371

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             ++ EM   GIE +A+TY+TII  +GKA K +     F  +  S G   D     +MI 
Sbjct: 372 TNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKL-RSSGVEIDQVLYQTMIV 430

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AY  SG +   ++  +E        D        K   RAG  ++   V           
Sbjct: 431 AYERSGLVAHAKRLLHELK----HPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVK 486

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  +  +++ F +      + E F+KM+  G  P+S     +++AY K     K D++ 
Sbjct: 487 DISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALY 546

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF--------LTMKERHCVPDNI 432
           ++++  + +        ++S YG   D   +  LF        +  KE H V  +I
Sbjct: 547 KEMQEEECVFPDEVHFQMLSLYGARKDFMMIEALFERLDSDPNINKKELHLVVASI 602


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 173/366 (47%), Gaps = 15/366 (4%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIN 173
           + +T ++  L    + E+A  LF  +  +G+ P+  +Y  ++  YG+ G    +  + + 
Sbjct: 188 RAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLE 247

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M++ +  +PD +T S +I +C +    D       ++   G     VTYN ++  +GKA
Sbjct: 248 EMRA-AGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKA 306

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             + E       M ESG C PD  T N +  +Y  +G  E+  K  +     G+  +  T
Sbjct: 307 GNYMEALRVLKEMEESG-CKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFT 365

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +  +YG AG  D+  ++ D+M+K  F P V TYN+++   GK      M E   +M 
Sbjct: 366 YNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMS 425

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PN +T+ ++++   K G+   V  +L ++++  V L    FN +ISAYG+ G   
Sbjct: 426 RSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRA 485

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK------ 467
              +++  M      P   T+  ++   +  G   AAQ++ NKM    +N G K      
Sbjct: 486 NAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKM----KNEGFKPNDMSY 541

Query: 468 --LIQC 471
             L+QC
Sbjct: 542 SLLLQC 547



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 164/395 (41%), Gaps = 70/395 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T + ++   G+    ++A   FE + S G  P V  Y AL+  +G++G   EA   + +M
Sbjct: 260 TASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEM 319

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S CKPD  TY+ L  S  +   ++   K L  M   GI  +A TYNTI+  YG A K
Sbjct: 320 EE-SGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGK 378

Query: 236 FEEM----------------------------ESSFSAMVE------SGGCHPDIFTLNS 261
            +E                             +S F+ M+E        GC P+  T N+
Sbjct: 379 VDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNT 438

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           M++  G  G    + +        GV+    T N L  +YGR G       + D M    
Sbjct: 439 MLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAG 498

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           F P + TYN ++    + G     +    KMK+ G KPN ++Y  L+  ++K G    ++
Sbjct: 499 FTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIE 558

Query: 382 SILRQVEN-----SDVIL------------------------------DTPFFNCIISAY 406
           +I ++V       S VIL                              D   FN ++S Y
Sbjct: 559 AIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMY 618

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + G   K GE+F ++K+    PD IT+ +M+  Y
Sbjct: 619 AKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMY 653



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           +V    + G  D     +++M  +    P  DV  Y+ ++ + +   R++   ++ AE+ 
Sbjct: 155 VVRTLAREGQHDAVCDLLDEMLPLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELK 214

Query: 213 YLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             G+  + V YN ++D YG+  + + ++ +    M  + G  PD FT +++I+A G  G 
Sbjct: 215 REGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEM-RAAGVEPDGFTASTVIAACGRDGL 273

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++   ++ +    G    + T N L + +G+AG Y +   V+  M++    P  VTYN 
Sbjct: 274 VDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNE 333

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +  ++ +AG  E+  +    M  +G+ PN+ TY ++++AY  AG + +  ++   ++ + 
Sbjct: 334 LAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNG 393

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
            I     +N I+   G+      M E+   M    C P+ +T+ TM+      GM
Sbjct: 394 FIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGM 448



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 177/380 (46%), Gaps = 3/380 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ ++ + L++ G + +      R  T+  ++ + GK       + + E M S G++   
Sbjct: 410 KKSRFNVMLEMLGEMSRSGCTPNRV-TWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCR 468

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D +  L+SAYG+ G    AF   ++M + +   P + TY+ L+   ++   +   + I+ 
Sbjct: 469 DTFNTLISAYGRCGSRANAFKMYDEM-TAAGFTPCLTTYNALLSVLSRQGDWTAAQSIIN 527

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M   G + + ++Y+ ++  + K      +E+     V  G   P    L +++ +    
Sbjct: 528 KMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEA-IEKEVYEGTVFPSWVILRTLVISNFKC 586

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +E +E+ + E    G K D+   N +   Y + GMY K   + D +++    P ++TY
Sbjct: 587 RRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITY 646

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++ + K+    + E+  K++K   +KP+ ++Y ++++ + K GLI +   IL ++  
Sbjct: 647 NSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIA 706

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V      ++ ++  Y       +  E+   M +R+  P  +T+  ++ +Y      + 
Sbjct: 707 DGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDE 766

Query: 450 AQNLENKMIAMKENSGKKLI 469
           A+    ++     NS +KL+
Sbjct: 767 ARGFLYEIAETDRNSDQKLL 786


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 189/400 (47%), Gaps = 49/400 (12%)

Query: 100 IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           +F  ++ Q+ Y AR   +  ++ +  +  + +QA  LF  M     KP  + Y AL++A+
Sbjct: 136 VFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAH 195

Query: 160 GQSGLLDEAFSTINDM--------------------------KSVSDCK--------PDV 185
           G++G    A + ++DM                          ++++ CK        PD+
Sbjct: 196 GRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDL 255

Query: 186 YTYSILI---KSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            T++I++   KS T++ +    F+LI+          I     T+N II    K K++++
Sbjct: 256 VTHNIMLTAFKSGTQYSKALSYFELIKGT-------HIRPDTTTHNIIIHCLVKLKQYDK 308

Query: 239 MESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
               F++M E    CHPD+ T  SMI  Y   G+IE  E  +N     G+K +I + N L
Sbjct: 309 AVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNAL 368

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             +Y   GM ++   V + +++  F P VV+Y  ++  +G++   +K  E FK +K   +
Sbjct: 369 LGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNL 428

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           KPN ++Y +L+ AY   GL+     ILR++E   +  +      +++A G+ G   K+  
Sbjct: 429 KPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDT 488

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +    + R    + + + + I +Y  +G  + A +L N M
Sbjct: 489 VLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSM 528



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 179/368 (48%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  +  I    +  +W+ A+ I   + +     +R  T+  L+   G     ++A 
Sbjct: 182 KPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSR-STYNNLINACGSSGNWKEAL 240

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  +++A+       +A S    +K  +  +PD  T++I+I  
Sbjct: 241 NVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKG-THIRPDTTTHNIIIHC 299

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
             K  ++D    I   M     EC    VT+ ++I  Y      E  E++F+ M+ + G 
Sbjct: 300 LVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMML-AEGL 358

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY   G   +  + +NE    G + D+ +   L  +YGR+    K R 
Sbjct: 359 KPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKARE 418

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           +   +++    P +V+YN +I+ +G  G +E   E  ++M+   + PN ++ C+L++A  
Sbjct: 419 IFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACG 478

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + G  +K+D++L   E   + L+T  +N  I +Y   G+ +K  +L+ +M+++    D++
Sbjct: 479 RCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSV 538

Query: 433 TFATMIQA 440
           T+  +I  
Sbjct: 539 TYTVLISG 546



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 180/395 (45%), Gaps = 48/395 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +K K++  A+ IF  +++++   + C     TFT ++ +   C   E     F +ML++G
Sbjct: 301 VKLKQYDKAVDIFNSMKEKK---SECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEG 357

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LKP++  Y AL+ AY   G+ +EA    N++K  +  +PDV +Y+ L+ +  +  +    
Sbjct: 358 LKPNIVSYNALLGAYAARGMENEALQVFNEIKQ-NGFRPDVVSYTSLLNAYGRSRKPQKA 416

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I   +    ++ + V+YN +ID YG     E+       M E    HP++ ++ ++++
Sbjct: 417 REIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREM-EQDKIHPNVVSICTLLA 475

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A G  G   K++   +   + G+K +    N    SY   G YDK   + + M+K+    
Sbjct: 476 ACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKS 535

Query: 325 TVVTYNIVIE------TFGKA---------------------------------GHIEKM 345
             VTY ++I        FG+A                                 G I + 
Sbjct: 536 DSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEA 595

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           E  F  MK  G  P+ +TY +++ AY+ A    K+ ++  ++E +DV LDT     ++ A
Sbjct: 596 ESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRA 655

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + + G   ++  L  +M+E+     +  F  M+ A
Sbjct: 656 FNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSA 690



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 148/332 (44%), Gaps = 36/332 (10%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+    Q G ++      + MK+  +       Y+++I+   + +R D    +  EM   
Sbjct: 120 LIRELTQRGSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKC 179

Query: 215 GIECSAVTYNTIIDGYGKAKKF-------EEM--------ESSFSAMVES---------- 249
             +  A TYN +I+ +G+A ++       ++M         S+++ ++ +          
Sbjct: 180 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 239

Query: 250 ---------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                     G  PD+ T N M++A+ +     K   ++       ++ D  T NI+   
Sbjct: 240 LNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHC 299

Query: 301 YGRAGMYDKMRSVMDFM--QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             +   YDK   + + M  +K    P VVT+  +I  +   GHIE  E  F  M   G+K
Sbjct: 300 LVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLK 359

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN ++Y +L+ AY+  G+  +   +  +++ +    D   +  +++AYG++   +K  E+
Sbjct: 360 PNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREI 419

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           F  +K  +  P+ +++  +I AY + G+ E A
Sbjct: 420 FKMIKRNNLKPNIVSYNALIDAYGSNGLLEDA 451



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 157/320 (49%), Gaps = 9/320 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F  ++Q   ++    ++T L+   G+ ++P++A  +F+++  + LKP++  Y AL+
Sbjct: 381 ALQVFNEIKQNG-FRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALI 439

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +GLL++A   + +M+      P+V +   L+ +C +  +   I+ +L+     GI
Sbjct: 440 DAYGSNGLLEDAIEILREMEQ-DKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGI 498

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V YN+ I  Y    ++++    +++M        D  T   +IS         +  
Sbjct: 499 KLNTVAYNSAIGSYINVGEYDKAIDLYNSM-RKKKIKSDSVTYTVLISGCCKMSKFGEAL 557

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  E   + +    +  + +  +Y +     G   +  S  + M+     P VVTY  +
Sbjct: 558 SFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAM 617

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ +  A   EK+   F++M+   +K ++I   +L+ A++K G   +V S+ + +   D+
Sbjct: 618 LDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDI 677

Query: 393 IL-DTPFFNCIISAYGQAGD 411
            L DT FF  ++SA G   D
Sbjct: 678 PLSDTIFFE-MVSACGLLHD 696



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +      ++    + E      K D +T N L  ++GRAG +    ++M
Sbjct: 151 DIY--NMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIM 208

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  +++A+   
Sbjct: 209 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSG 268

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNI 432
               K  S    ++ + +  DT   N II    +    +K  ++F +MKE+   C PD +
Sbjct: 269 TQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVV 328

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF +MI  Y+  G  E  +   N M+A
Sbjct: 329 TFTSMIHLYSVCGHIENCEAAFNMMLA 355



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 124/299 (41%), Gaps = 41/299 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +   L+   G+C Q  +   +       G+K +   Y + + +Y   G  D+A    N M
Sbjct: 469 SICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSM 528

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK- 234
           +     K D  TY++LI  C K  +F      + EM +L +  S   Y++II  Y K   
Sbjct: 529 RK-KKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQAS 587

Query: 235 ---KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
              +  E ES+F+ M +S GC PD+ T  +M+ AY  +   EK+   + E     VK D 
Sbjct: 588 ALGQIIEAESTFNLM-KSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDT 646

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFPTV---------------VTY 329
                L +++ + G   ++ S+   M+++        FF  V               + Y
Sbjct: 647 IACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKY 706

Query: 330 -------------NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                        N+ + + GK+G IE M + F KM   G + N  TY  L+     +G
Sbjct: 707 MEPSLPVISSGCLNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILLKNLLSSG 765


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 2/316 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           + E MLS G  P +  Y  L+    + G L  A   +N+M+ +  C+P+V TY+ILI   
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTILIDRF 59

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R +    +L EMS  G+  +AV YN +I    K +K ++  + F  M  S GC PD
Sbjct: 60  CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSKGCKPD 118

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           IFT NS+I         E+    Y +  L GV A+  T N L  ++ R G   +   +++
Sbjct: 119 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  R      +TYN +I+   +AG+IEK    F+ M  +G+ PN+I+   L++   + G
Sbjct: 179 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 238

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I      LR + +  +  D   +N +I+   + G  ++   LF  ++     PD IT+ 
Sbjct: 239 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYN 298

Query: 436 TMIQAYNALGMTEAAQ 451
           T+I  +   GM + A 
Sbjct: 299 TLISWHCKEGMFDDAH 314



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 155/327 (47%), Gaps = 4/327 (1%)

Query: 117 FTKLMVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++LG CK+    S   L   M   G +P+V  YT L+  + + G L+EA + +++
Sbjct: 15  FTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDE 74

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M S      +   Y+ LI +  K  +      +  +MS  G +    T+N++I G  K  
Sbjct: 75  M-SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 133

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           KFEE    +  M+   G   +  T N++I A+   G +++  K  N+    G   D  T 
Sbjct: 134 KFEEALGLYQDMLLE-GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITY 192

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K+  RAG  +K  ++ + M  +   P  ++ NI+I    + G+I+   E+ + M H
Sbjct: 193 NGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIH 252

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ P+ +TY SL++   K G   +  ++  +++   +  D   +N +IS + + G  + 
Sbjct: 253 RGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDD 312

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
              L     +   +P+ +T+  ++  +
Sbjct: 313 AHLLLSRGVDSGFIPNEVTWYILVSNF 339



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 2/298 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K  + E+A  + + M   GL  +   Y  L+SA  +   + +A +   DM
Sbjct: 51  TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 110

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   CKPD++T++ LI    K ++F+    +  +M   G+  + +TYNT+I  + +   
Sbjct: 111 SS-KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 169

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     + M+  G C  D  T N +I A   +GNIEK    + +    G+  +  + N
Sbjct: 170 MQEALKLVNDMLFRG-CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCN 228

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     R G        +  M  R   P +VTYN +I    K G  ++    F K++  
Sbjct: 229 ILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVE 288

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           G+ P++ITY +L+S + K G+      +L +  +S  I +   +  ++S + + GD E
Sbjct: 289 GICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%)

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S GC PDIFT N++I      G +    +  NE  + G + ++ T  IL   + + G  +
Sbjct: 7   SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 66

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           + R+V+D M  +      V YN +I    K   ++     F  M  +G KP+  T+ SL+
Sbjct: 67  EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 126

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               K     +   + + +    VI +T  +N +I A+ + G +++  +L   M  R C 
Sbjct: 127 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCP 186

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            D+IT+  +I+A    G  E    L   M++
Sbjct: 187 LDDITYNGLIKALCRAGNIEKGLALFEDMMS 217


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 2/353 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           QQ+       +F+ L+ +     + + A+     M   GL P   +YT ++  + ++G +
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA    ++M  +  C PDV TY+ L+    K HR    E++L EM   G+     T+ T
Sbjct: 349 SEALRVRDEMVGLG-CLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I GY +   FE+    F  ++      PD+   NS+I      G++ K  + +++ +  
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQR-LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAR 466

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            +  +  T +IL  S+   G  ++    +D M  +   P ++TYN +I+ + ++G+++K 
Sbjct: 467 EIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKG 526

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +++ +KM    + P+ IT+ +L+  Y K   +    ++   +E   V  D   +N II+ 
Sbjct: 527 QQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIING 586

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + + G++E+ G +F  M      PD  T+ ++I  +   G ++ A  L ++M+
Sbjct: 587 FSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMM 639



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 180/394 (45%), Gaps = 5/394 (1%)

Query: 68  VSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           V S   K L P  V     L    K +++  A ++F  +  Q       ++F  L+    
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM-DQCSVAPDVRSFNILIGGFC 273

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           +  + E+A   ++ M   G+ P V  ++ L+  +   G +D A + + +MK +    PD 
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLG-LVPDG 332

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
             Y+++I    +        ++  EM  LG     VTYNT+++G  K  +  + E   + 
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNE 392

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M E G   PD+ T  ++I  Y   GN EK  + ++      ++ D+   N L     R G
Sbjct: 393 MKERG-VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKG 451

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              K   + D M  R  FP  VTY+I+I++  + G +E+   +  +M  +G  PN +TY 
Sbjct: 452 DLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYN 511

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           S++  Y ++G + K    L+++   +++ D   FN +I  Y +  ++     +F  M++ 
Sbjct: 512 SIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE 571

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              PD +T+  +I  ++  G  E A  +  KM A
Sbjct: 572 MVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGA 605



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 147/317 (46%), Gaps = 10/317 (3%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P V  +  L+ A  ++G +D A + ++ M +    KP + T++ ++K   K  RFD  ++
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMAN-KGLKPGIVTFNSVLKGLCKHRRFDKAKE 248

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +   M    +     ++N +I G+ +  + EE    +  M +  G  PD+ + + +I  +
Sbjct: 249 VFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM-QQRGVTPDVVSFSCLIGLF 307

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G ++    +  E   +G+  D     ++   + RAG   +   V D M      P V
Sbjct: 308 STRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV----DS 382
           VTYN ++    K   +   EE   +MK RG+ P+  T+ +L+  Y + G   K     D+
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT 427

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L Q    DV+     +N +I    + GD+ K  EL+  M  R   P+++T++ +I ++ 
Sbjct: 428 LLHQRLRPDVVA----YNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHC 483

Query: 443 ALGMTEAAQNLENKMIA 459
             G  E A    ++M++
Sbjct: 484 EKGQVEEAFGFLDEMVS 500



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 1/163 (0%)

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           TLNI+  SY ++  +DK  +V+  M+KR  FP VVT+N++I+   +AG ++        M
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            ++G+KP  +T+ S++    K     K   + R ++   V  D   FN +I  + + G+V
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 454
           E+  + +  M++R   PD ++F+ +I  ++  G M  AA  L 
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLR 321



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 98/215 (45%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           +V S     + +TLN M+ +Y  S   +K +   +E     V  D+ T N+L  +  RAG
Sbjct: 147 LVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAG 206

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D   +++D M  +   P +VT+N V++   K    +K +E F+ M    + P+  ++ 
Sbjct: 207 DVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFN 266

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+  + + G + +     ++++   V  D   F+C+I  +   G ++        MK  
Sbjct: 267 ILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGL 326

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             VPD + +  +I  +   G    A  + ++M+ +
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGL 361



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G  K+ +Q     + M+ D + P +  +  L+  Y +   +  AF+  N M+     +PD
Sbjct: 521 GNVKKGQQ---FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEK-EMVQPD 576

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             TY+++I   ++    +   ++  +M   GIE    TY ++I+G+  A   +E      
Sbjct: 577 AVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHD 636

Query: 245 AMVESGGCHPDIF 257
            M+  G    D F
Sbjct: 637 EMMHRGFAPDDKF 649


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 174/362 (48%), Gaps = 3/362 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ALKI+  +R +   +    +F+ L+ +  +  + + A      M   GL P   +YT ++
Sbjct: 219 ALKIYKEMRHRG-IKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 277

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             + ++GL+ +A    ++M     C PDV TY+ L+    K  R    E +L EM   G+
Sbjct: 278 GGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV 336

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                T+ T+I GY    K ++    F  M+      PDI T N++I      G+++K  
Sbjct: 337 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             +++ +   +  +  T +IL  S+   G  +     +D M  +   P ++TYN +I+ +
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            ++G++ K +++ +KM    + P+ ITY +L+  Y K   +     +L  +E   V  D 
Sbjct: 456 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 515

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I+ +   G+V++ G +F  M  +   PD  T+ +MI  +   G ++ A  L ++
Sbjct: 516 VTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDE 575

Query: 457 MI 458
           M+
Sbjct: 576 ML 577



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 16/372 (4%)

Query: 102 GLLRQQQWYQA--------------RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R   W +A                ++FT L+    +  + E+A  +++ M   G+KP
Sbjct: 174 GLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKP 233

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  ++ L+  + + G +D A + + +M+      PD   Y+++I    +        ++
Sbjct: 234 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFG-LVPDGVIYTMVIGGFCRAGLMSDALRV 292

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             EM   G     VTYNT+++G  K ++  + E   + M E G   PD+ T  ++I  Y 
Sbjct: 293 RDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG-VPPDLCTFTTLIHGYC 351

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G ++K  + ++      ++ DI T N L     R G  DK   + D M  R  FP  V
Sbjct: 352 IEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV 411

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY+I+I++  + G +E    +  +M ++G+ PN +TY S++  Y ++G + K    L+++
Sbjct: 412 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 471

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             + V  D   +N +I  Y +   +    +L   M++    PD +T+  +I  ++  G  
Sbjct: 472 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNV 531

Query: 448 EAAQNLENKMIA 459
           + A  +  KM A
Sbjct: 532 QEAGWIFEKMCA 543



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G C+    ++A  +F+ M   G+ P V  +T L+  + + G ++EA     +M+   
Sbjct: 171 VLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH-R 229

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             KPD+ ++S LI    +  + D     L EM   G+    V Y  +I G+ +A    + 
Sbjct: 230 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 289

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                 MV   GC PD+ T N++++       +   E   NE    GV  D+ T   L  
Sbjct: 290 LRVRDEMVGC-GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 348

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y   G  DK   + D M  +   P +VTYN +I+   + G ++K  + +  M  R + P
Sbjct: 349 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 408

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N +TY  L+ ++ + G +      L ++ N  ++ +   +N II  Y ++G+V K  +  
Sbjct: 409 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 468

Query: 420 LTMKERHCVPDNITFATMIQAY 441
             M      PD IT+ T+I  Y
Sbjct: 469 QKMMVNKVSPDLITYNTLIHGY 490



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 36/314 (11%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S+ + + YT +I++ +  K   FD ++ +++EM    +    VT+N ++D   +A   E 
Sbjct: 89  SNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA 148

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             +   +MV S G  P I T NS++     SG  +K  + + E +  GV  D+++  IL 
Sbjct: 149 AMALVDSMV-SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 207

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             + R G  ++   +   M+ R   P +V+++ +I  F + G ++    Y ++M+  G+ 
Sbjct: 208 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 267

Query: 359 PNSITYCSLVSAYSKAGL-----------------------------------IMKVDSI 383
           P+ + Y  ++  + +AGL                                   ++  + +
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L ++    V  D   F  +I  Y   G ++K  +LF TM  +   PD +T+ T+I     
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 387

Query: 444 LGMTEAAQNLENKM 457
            G  + A +L + M
Sbjct: 388 QGDLDKANDLWDDM 401



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 2/331 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  L + M+S GLKP +  Y +++    +SG+ D+A+    +M       PDV +++I
Sbjct: 147 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFG-VAPDVRSFTI 205

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +    +   KI  EM + GI+   V+++ +I  + +  K +   +    M    
Sbjct: 206 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM-RCF 264

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD      +I  +  +G +    +  +E    G   D+ T N L     +       
Sbjct: 265 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 324

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M++R   P + T+  +I  +   G ++K  + F  M ++ ++P+ +TY +L+  
Sbjct: 325 EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 384

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G + K + +   + + ++  +   ++ +I ++ + G VE        M  +  +P+
Sbjct: 385 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 444

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +T+ ++I+ Y   G     Q    KM+  K
Sbjct: 445 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 475



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 42/293 (14%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLS 142
           L+   K+++   A  +   +R++      C TFT L+   G C +   ++A  LF+ ML+
Sbjct: 312 LNGLCKERRLLDAEGLLNEMRERGVPPDLC-TFTTLI--HGYCIEGKLDKALQLFDTMLN 368

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             L+P +  Y  L+    + G LD+A    +DM S  +  P+  TYSILI S  +  + +
Sbjct: 369 QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS-REIFPNHVTYSILIDSHCEKGQVE 427

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
                L EM   GI  + +TYN+II GY ++    + +     M+ +    PD+ T N++
Sbjct: 428 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK-VSPDLITYNTL 486

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  Y       K +K ++ F L                             ++ M+K   
Sbjct: 487 IHGY------IKEDKMHDAFKL-----------------------------LNMMEKEKV 511

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            P VVTYN++I  F   G++++    F+KM  +G++P+  TY S+++ +  AG
Sbjct: 512 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 564



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           +V S     + +TLN M+  Y  +   +K++   +E     V  D+ T N++  +  RAG
Sbjct: 85  LVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAG 144

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             +   +++D M  +   P +VTYN V++   ++G  +K  E FK+M   G+ P+  ++ 
Sbjct: 145 DAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFT 204

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+  + + G I +   I +++ +  +  D   F+C+I  + + G   KM      ++E 
Sbjct: 205 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG---KMDHAMAYLREM 261

Query: 426 HC---VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            C   VPD + +  +I  +   G+   A  + ++M+ 
Sbjct: 262 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 298


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 169/352 (48%), Gaps = 1/352 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + KK +LAL +F   R +  Y     +F+ ++  LG+  +  +A  L   M   GL+P++
Sbjct: 202 RLKKIELALDLFEESRTRG-YGNTVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNL 260

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y A++ A  +  L  E      +    + C PD  TY+ L+K+C    R+ L   +LA
Sbjct: 261 VTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLA 320

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM + GI     TYNT +D   K  + +    +    + +    P++ T +++++ Y  +
Sbjct: 321 EMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGYSKA 380

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
              E     Y+E   + ++ D  + N L   Y   G +++       M+       VVTY
Sbjct: 381 ERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTY 440

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +IE +G+     ++++ F +MK R + PN +TY +L+  Y+K  +  +   + R+++ 
Sbjct: 441 NALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQ 500

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +  D  F++ +I A  + G +E    L   M E+   P+ +T+ ++I A+
Sbjct: 501 EGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAF 552



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G+  +  +   LF+ M +  + P+   Y+ L+  Y +  +  EA     ++
Sbjct: 439 TYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYREL 498

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     K DV  YS LI +  K    +   ++L  M+  G   + VTYN+IID +   ++
Sbjct: 499 KQ-EGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFKIGQQ 557

Query: 236 FEEMESS 242
              +E +
Sbjct: 558 LPALECA 564


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 155/329 (47%), Gaps = 5/329 (1%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           ++ E A  L E M+ +G KP +  Y AL+    +   + EA      +      +P+V T
Sbjct: 237 RRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLR-QGYEPEVPT 295

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ILI    K  R +   ++ + +   G+E  A+TY   IDG  KA + E+       M 
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 355

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E G C PD+ + N++I+       +++ E   +     G   +  + N L     RAG +
Sbjct: 356 EKG-CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 414

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---GHIEKMEEYFKKMKHRGMKPNSITY 364
            K  +    M KR   PTVVTYNI+++   KA   G I++    F  M  +G  P+ +TY
Sbjct: 415 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 474

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+    KAG +     +L  +E    I +   +N +IS       V++  ELF+ M E
Sbjct: 475 SALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVE 534

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + CVPD IT+ T+I A     M + A  L
Sbjct: 535 KGCVPDTITYGTIISALCKQEMVDKALAL 563



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 7/343 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A  +F  +R+  ++  R  T+  L+  L    +   A  L+E M+  G  P V  Y  L+
Sbjct: 69  AQTVFDGMRKHGFWPNRI-TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLL 127

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             + + G LDEA   I D        PDV TY+ LI    K  + D  ++IL  M    +
Sbjct: 128 HGFCKVGKLDEALK-IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESL 186

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-GNIEKM 275
               VTYN++++G  K  + +E       ++   G  P++ T +++IS        +E  
Sbjct: 187 VPDVVTYNSLVNGLCKNGRVDEAR----MLIVDKGFSPNVITYSTLISGLCRELRRLESA 242

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            +   +  L G K DI + N L     R     +   +   + ++ + P V TYNI+I+ 
Sbjct: 243 RQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDG 302

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K   + +  E F  +   G++P++ITY   +    KAG +     +L+ ++    + D
Sbjct: 303 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 362

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               N +I+   +   V++   L   M+ + C P+ I+F T+I
Sbjct: 363 VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 405



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 5/341 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L + +   +A  LF  +L  G +P V  Y  L+    +   ++EAF   + +
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 +PD  TY++ I    K  R +    +L +M   G     V++N +I+G  K K+
Sbjct: 320 VK-HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 378

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E E   S M E+ GC P+  + N++I     +G  +K    + E    GVK  + T N
Sbjct: 379 VDEAEVLLSGM-EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 437

Query: 296 ILTKSYGRA---GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           IL     +A   G   +  ++ D M ++   P VVTY+ +I+  GKAG ++        M
Sbjct: 438 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 497

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + +G  PN  TY SL+S       + +   +   +     + DT  +  IISA  +   V
Sbjct: 498 EAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMV 557

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +K   LF    E   VP +  + ++I    A+   + A  L
Sbjct: 558 DKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKL 598



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 173/375 (46%), Gaps = 12/375 (3%)

Query: 90  KQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           K  K   ALKIF G +++   +     T+  L+    K  + ++A  + + M+S+ L P 
Sbjct: 132 KVGKLDEALKIFDGAVKR--GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPD 189

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 207
           V  Y +LV+   ++G +DEA   I D K  S   P+V TYS LI   C +  R +   ++
Sbjct: 190 VVTYNSLVNGLCKNGRVDEARMLIVD-KGFS---PNVITYSTLISGLCRELRRLESARQL 245

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L +M   G +   V+YN +I G  + +   E    F +++  G   P++ T N +I    
Sbjct: 246 LEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQG-YEPEVPTYNILIDGLL 304

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
               + +  + ++     G++ D  T  +      +AG  +    ++  M ++   P VV
Sbjct: 305 KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVV 364

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           ++N VI    K   +++ E     M+ +G  PN+I++ +L+    +AG   K  +  +++
Sbjct: 365 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM 424

Query: 388 ENSDVILDTPFFNCIISAYGQA---GDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
               V      +N ++    +A   G +++   LF  M E+  VPD +T++ +I      
Sbjct: 425 LKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKA 484

Query: 445 GMTEAAQNLENKMIA 459
           G  + A+ L   M A
Sbjct: 485 GKLDDARRLLGAMEA 499



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 19/275 (6%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YT  IL++S  K  + +   + + ++   G+ C   T+N  I G  +A +  + ++ 
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTV 72

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M + G   P+  T N+++S   N G +   +  Y      G   D+ T N L   + 
Sbjct: 73  FDGMRKHG-FWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G  D+   + D   KR F P VVTYN +I  F KA  +++ +   ++M    + P+ +
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAYG-QAGDVEKM 415
           TY SLV+   K G   +VD      E   +I+D  F      ++ +IS    +   +E  
Sbjct: 192 TYNSLVNGLCKNG---RVD------EARMLIVDKGFSPNVITYSTLISGLCRELRRLESA 242

Query: 416 GELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 449
            +L   M    C PD +++  +I       G++EA
Sbjct: 243 RQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 143/334 (42%), Gaps = 52/334 (15%)

Query: 97  ALKIFG-LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           ALK+FG +LRQ   Y+    T+  L+  L K  +  +A  LF  ++  GL+P    YT  
Sbjct: 277 ALKLFGSVLRQ--GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVF 334

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA------ 209
           +    ++G +++A   + DM     C PDV +++ +I    K  R D  E +L+      
Sbjct: 335 IDGLCKAGRVEDALLMLKDMDE-KGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 210 -----------------------------EMSYLGIECSAVTYNTIIDGYGKAK---KFE 237
                                        EM   G++ + VTYN ++DG  KA+   + +
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E  + F AM+E G   PD+ T +++I   G +G ++   +        G   ++ T N L
Sbjct: 454 EAITLFDAMIEKGRV-PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSL 512

Query: 298 TKSYGRAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
               G  G+ DK+   ++    M ++   P  +TY  +I    K   ++K    F     
Sbjct: 513 IS--GLCGL-DKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLE 569

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            G+ P S  Y SL+        + +VD  L+ ++
Sbjct: 570 AGVVPTSGMYFSLIDGLCA---VARVDEALKLLQ 600



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 1/200 (0%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD +T+  ++ +   SG IEK  ++  +  + G+  DI T NI      RA      ++V
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTV 72

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            D M+K  F+P  +TYN ++      G +   +  +++M   G  P+ +TY +L+  + K
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G + +   I         + D   +N +I+ + +A  +++   +   M     VPD +T
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192

Query: 434 FATMIQAYNALGMTEAAQNL 453
           + +++      G  + A+ L
Sbjct: 193 YNSLVNGLCKNGRVDEARML 212



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 3/171 (1%)

Query: 290 DIQTLNILTKSYGRAGMYDKM-RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
           D  T+ IL +S  ++G  +K  R V   + K      + T+NI I    +A  I   +  
Sbjct: 15  DAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC--DISTFNIYISGLCRASRIGDAQTV 72

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F  M+  G  PN ITY +L+S     G +    ++  ++  +    D   +N ++  + +
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G +++  ++F    +R  VPD +T+  +I  +      + AQ +  +M++
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 183


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 5/316 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 202
           G  PSV  Y A++ A   + L   A    + M S     P+VYTY+IL+++ C + HR +
Sbjct: 151 GYVPSVLAYNAVLLALSDASL-TSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRKE 208

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            +  IL +M   G   + VTYNT++  + +A + +  E     M+  GG  P++ T NSM
Sbjct: 209 ALS-ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAER-LVGMMREGGLKPNLVTFNSM 266

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++    +G +E   K ++E    G+  D  + N L   Y +AG   +  SV   M ++  
Sbjct: 267 VNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVT+  +I    KAG++E+     ++M+ RG++ N +T+ +L+  + K G +     
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 386

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            +R ++   +      +N +I+ Y   G +++  EL   M+ +   PD +T++T+I AY 
Sbjct: 387 AVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446

Query: 443 ALGMTEAAQNLENKMI 458
               T +A  L  +M+
Sbjct: 447 KNCDTHSAFELNQQML 462



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 155/307 (50%), Gaps = 2/307 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A   F+ MLSDG+ P+V  Y  LV A    G   EA S + DM+  + C P+V TY+ L+
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRG-AGCGPNVVTYNTLV 232

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +  +    D  E+++  M   G++ + VT+N++++G  KA K E+    F  MV  G  
Sbjct: 233 AAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREG-L 291

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PD  + N+++  Y  +G   +    + E    G+  D+ T   L     +AG  ++  +
Sbjct: 292 APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVT 351

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  M++R      VT+  +I+ F K G ++      + MK   +KP+ + Y +L++ Y 
Sbjct: 352 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYC 411

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
             G + +   +L ++E   +  D   ++ IISAY +  D     EL   M E+  +PD I
Sbjct: 412 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 471

Query: 433 TFATMIQ 439
           T++++I+
Sbjct: 472 TYSSLIR 478



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 159/377 (42%), Gaps = 18/377 (4%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +  Q+       TFT L+ ++ K    E+A  L   M   GL+ +   +TAL+
Sbjct: 314 ALSVFAEM-TQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALI 372

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             + + G LD+A   +  MK     KP V  Y+ LI       R D   ++L EM   G+
Sbjct: 373 DGFCKKGFLDDALLAVRGMKQCR-IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 431

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           +   VTY+TII  Y K             M+E G   PD  T +S+I        +    
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG-VLPDAITYSSLIRVLCGEKRLSDAH 490

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             +     +G++ D  T   L   + + G  +   S+ D M K    P VVTY+++I   
Sbjct: 491 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGL 550

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA---------------GLIMKVD 381
            K+    + ++   K+ H    P +  Y +L+    KA               GL+ + D
Sbjct: 551 SKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEAD 610

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + + + + +  LD   ++ +I  + +AG+V K       M +    P++ +  ++I+  
Sbjct: 611 KVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGL 670

Query: 442 NALGMTEAAQNLENKMI 458
              GM   A  +  +++
Sbjct: 671 FENGMVVEADQVIQQLL 687



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 152/345 (44%), Gaps = 7/345 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++ G++R+    +    TF  ++  + K  + E A  +F+ M+ +GL P    Y  LV
Sbjct: 244 AERLVGMMREG-GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLV 302

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y ++G   EA S   +M       PDV T++ LI    K    +    ++ +M   G+
Sbjct: 303 GGYCKAGCSHEALSVFAEMTQ-KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL 361

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH--PDIFTLNSMISAYGNSGNIEK 274
           + + VT+  +IDG+ K    ++   +   M +   C   P +   N++I+ Y   G +++
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQ---CRIKPSVVCYNALINGYCMVGRMDE 418

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             +  +E    G+K D+ T + +  +Y +         +   M ++   P  +TY+ +I 
Sbjct: 419 ARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 478

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
                  +      FK M   G++P+  TY SL+  + K G +    S+  ++  + V+ 
Sbjct: 479 VLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLP 538

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           D   ++ +I+   ++    +  +L   +     +P N  +  ++ 
Sbjct: 539 DVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMH 583



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 164/385 (42%), Gaps = 66/385 (17%)

Query: 103 LLRQ--QQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           L+RQ  ++  Q    TFT L+   G CK+   + A L    M    +KPSV  Y AL++ 
Sbjct: 352 LVRQMRERGLQMNEVTFTALID--GFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALING 409

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI----KSCTKFHRFDLIEKILAEMSYL 214
           Y   G +DEA   +++M++    KPDV TYS +I    K+C     F+L +++L +    
Sbjct: 410 YCMVGRMDEARELLHEMEA-KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK---- 464

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+   A+TY+++I      K+  +    F  M++ G   PD FT  S+I  +   GN+E 
Sbjct: 465 GVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLG-LQPDEFTYTSLIDGHCKEGNVES 523

Query: 275 MEKWYNEFNLMGVKADIQTLNILT------------------------------------ 298
               +++    GV  D+ T ++L                                     
Sbjct: 524 ALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMH 583

Query: 299 --------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                         K +   G+ ++   V   M  R +      Y+++I    +AG++ K
Sbjct: 584 CCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMK 643

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
              + K+M   G  PNS +  SL+    + G++++ D +++Q+ N   + D      +I 
Sbjct: 644 ALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALID 703

Query: 405 AYGQAGDVEKMGELFLTMKERHCVP 429
                G+V+ + ++   M +   +P
Sbjct: 704 LNLNEGNVDAVLDVLHGMAKDGLLP 728


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 164/367 (44%), Gaps = 8/367 (2%)

Query: 103 LLRQQQWYQARCQTFT--KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL + Q  + R  +F    L+ +L K  Q  +A  LF+  L     P    +  L+    
Sbjct: 130 LLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLC 189

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           + G +D AF    DM+S   C PDV TY+ LI    K +      ++  E+     +CS 
Sbjct: 190 RVGGVDRAFEVFKDMESFG-CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRS-DCSP 247

Query: 221 --VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             VTY +II G+ K+ K +E  + F  M+ SG   P++ T N +I  +G  GNI + E  
Sbjct: 248 DIVTYTSIISGFCKSGKMKEASNLFEEMMRSG-IQPNVITFNVLIDGFGKIGNIAEAEAM 306

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +       AD+ T   L   Y RAG  +      + M+ R   PTV TY ++I    K
Sbjct: 307 YRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCK 366

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              + +  ++  ++K+  + P    Y  ++  + KAG + + + IL+++E      D   
Sbjct: 367 ENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVT 426

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           F  +I  +   G + +   +F  M    C PDNIT  ++I      GM   A  +  KM 
Sbjct: 427 FTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIR-KMA 485

Query: 459 AMKENSG 465
               N G
Sbjct: 486 LEDRNLG 492



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 152/349 (43%), Gaps = 70/349 (20%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE---- 238
           PD      L+    +   FD+++K+LAE+    +  ++  YN ++    K  +  E    
Sbjct: 106 PDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYL 165

Query: 239 ------MES-----SFSAMV-------------------ESGGCHPDIFTLNSMISAYGN 268
                 M+S     +F+ ++                   ES GC PD+ T N++I+    
Sbjct: 166 FKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCK 225

Query: 269 SGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           +  +++  + + E  +      DI T   +   + ++G   +  ++ + M +    P V+
Sbjct: 226 ANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVI 285

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---------IM 378
           T+N++I+ FGK G+I + E  ++KM +     + +T+ SL+  Y +AG          +M
Sbjct: 286 TFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVM 345

Query: 379 KVDSI--------------------------LRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  ++                          L Q++NS +I     +N +I  + +AG+V
Sbjct: 346 KTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNV 405

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           ++   +   M+E+ C PD +TF  +I  +   G    A N+ N+M+A +
Sbjct: 406 DEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATR 454



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY++L++S  +    DL+  +   M   G    +     ++    +A  F+ M     A 
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFD-MVKKLLAE 133

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           V+      + F  N+++S       + +    + E+ +M    D  T NIL +   R G 
Sbjct: 134 VQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGG 193

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYC 365
            D+   V   M+     P VVTYN +I    KA  +++  E FK+++ R    P+ +TY 
Sbjct: 194 VDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYT 253

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           S++S + K+G + +  ++  ++  S +  +   FN +I  +G+ G++ +   ++  M   
Sbjct: 254 SIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYF 313

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            C  D +TF ++I  Y   G         N M
Sbjct: 314 DCSADVVTFTSLIDGYCRAGQVNHGLKFWNVM 345


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 174/362 (48%), Gaps = 3/362 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ALKI+  +R +   +    +F+ L+ +  +  + + A      M   GL P   +YT ++
Sbjct: 280 ALKIYKEMRHRG-IKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 338

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             + ++GL+ +A    ++M     C PDV TY+ L+    K  R    E +L EM   G+
Sbjct: 339 GGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV 397

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                T+ T+I GY    K ++    F  M+      PDI T N++I      G+++K  
Sbjct: 398 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             +++ +   +  +  T +IL  S+   G  +     +D M  +   P ++TYN +I+ +
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            ++G++ K +++ +KM    + P+ ITY +L+  Y K   +     +L  +E   V  D 
Sbjct: 517 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 576

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I+ +   G+V++ G +F  M  +   PD  T+ +MI  +   G ++ A  L ++
Sbjct: 577 VTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDE 636

Query: 457 MI 458
           M+
Sbjct: 637 ML 638



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 16/372 (4%)

Query: 102 GLLRQQQWYQA--------------RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R   W +A                ++FT L+    +  + E+A  +++ M   G+KP
Sbjct: 235 GLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKP 294

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  ++ L+  + + G +D A + + +M+      PD   Y+++I    +        ++
Sbjct: 295 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFG-LVPDGVIYTMVIGGFCRAGLMSDALRV 353

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             EM   G     VTYNT+++G  K ++  + E   + M E G   PD+ T  ++I  Y 
Sbjct: 354 RDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG-VPPDLCTFTTLIHGYC 412

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G ++K  + ++      ++ DI T N L     R G  DK   + D M  R  FP  V
Sbjct: 413 IEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV 472

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY+I+I++  + G +E    +  +M ++G+ PN +TY S++  Y ++G + K    L+++
Sbjct: 473 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             + V  D   +N +I  Y +   +    +L   M++    PD +T+  +I  ++  G  
Sbjct: 533 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNV 592

Query: 448 EAAQNLENKMIA 459
           + A  +  KM A
Sbjct: 593 QEAGWIFEKMCA 604



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G C+    ++A  +F+ M   G+ P V  +T L+  + + G ++EA     +M+   
Sbjct: 232 VLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH-R 290

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             KPD+ ++S LI    +  + D     L EM   G+    V Y  +I G+ +A    + 
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                 MV   GC PD+ T N++++       +   E   NE    GV  D+ T   L  
Sbjct: 351 LRVRDEMV-GCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 409

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y   G  DK   + D M  +   P +VTYN +I+   + G ++K  + +  M  R + P
Sbjct: 410 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 469

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N +TY  L+ ++ + G +      L ++ N  ++ +   +N II  Y ++G+V K  +  
Sbjct: 470 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 529

Query: 420 LTMKERHCVPDNITFATMIQAY 441
             M      PD IT+ T+I  Y
Sbjct: 530 QKMMVNKVSPDLITYNTLIHGY 551



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 36/314 (11%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S+ + + YT +I++ +  K   FD ++ +++EM    +    VT+N ++D   +A   E 
Sbjct: 150 SNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA 209

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             +   +MV S G  P I T NS++     SG  +K  + + E +  GV  D+++  IL 
Sbjct: 210 AMALVDSMV-SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 268

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             + R G  ++   +   M+ R   P +V+++ +I  F + G ++    Y ++M+  G+ 
Sbjct: 269 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 359 PNSITYCSLVSAYSKAGL-----------------------------------IMKVDSI 383
           P+ + Y  ++  + +AGL                                   ++  + +
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L ++    V  D   F  +I  Y   G ++K  +LF TM  +   PD +T+ T+I     
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 444 LGMTEAAQNLENKM 457
            G  + A +L + M
Sbjct: 449 QGDLDKANDLWDDM 462



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 2/331 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  L + M+S GLKP +  Y +++    +SG+ D+A+    +M       PDV +++I
Sbjct: 208 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFG-VAPDVRSFTI 266

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +    +   KI  EM + GI+   V+++ +I  + +  K +   +    M    
Sbjct: 267 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM-RCF 325

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD      +I  +  +G +    +  +E    G   D+ T N L     +       
Sbjct: 326 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 385

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M++R   P + T+  +I  +   G ++K  + F  M ++ ++P+ +TY +L+  
Sbjct: 386 EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 445

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G + K + +   + + ++  +   ++ +I ++ + G VE        M  +  +P+
Sbjct: 446 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 505

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +T+ ++I+ Y   G     Q    KM+  K
Sbjct: 506 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 536



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           +V S     + +TLN M+  Y  +   +K++   +E     V  D+ T N++  +  RAG
Sbjct: 146 LVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAG 205

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             +   +++D M  +   P +VTYN V++   ++G  +K  E FK+M   G+ P+  ++ 
Sbjct: 206 DAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFT 265

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+  + + G I +   I +++ +  +  D   F+C+I  + + G   KM      ++E 
Sbjct: 266 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG---KMDHAMAYLREM 322

Query: 426 HC---VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            C   VPD + +  +I  +   G+   A  + ++M+ 
Sbjct: 323 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 359



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M+ + + P +  Y  L+  Y +   + +AF  +N M+     +PDV TY++LI   +   
Sbjct: 532 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGFSVHG 590

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                  I  +M   GIE    TY ++I+G+  A   +E       M++ G    D F
Sbjct: 591 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648


>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
 gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 386

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY---- 159
           +++Q+WY A    ++KL+ ++G+  Q   A  LF  M + G KP   VY +L+ A+    
Sbjct: 1   MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 60

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
            ++  L +A      MK +  C+P + TY+IL+++  +      ++ +  ++    +   
Sbjct: 61  DKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPD 120

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
             TYN ++D YGK    +EMES    M +S  C PD+ T N +I +YG     +KME+ +
Sbjct: 121 VYTYNGVLDAYGKNGMIKEMESVLVRM-KSTQCRPDVITFNILIDSYGRKQTFDKMEQVF 179

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
                   +    T N +  +YGRA + +K  SV++ M++  F P  VT   +I  +   
Sbjct: 180 KSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHC 239

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             + K  + F ++     K +  +  S++ AY   GL  + D +L       V+ +   +
Sbjct: 240 DCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTY 299

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +  AY +A D   + +L   M ++  VP+   F   ++A+
Sbjct: 300 KLLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAF 341



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 281
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 14  YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKTKALAKALGY 72

Query: 282 FNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
           F  M      +  I T NIL +++ +AG   ++  +   + +    P V TYN V++ +G
Sbjct: 73  FEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYG 132

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G I++ME    +MK    +P+ IT+  L+ +Y +     K++ + + +  S      P
Sbjct: 133 KNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 192

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        A+ + +++
Sbjct: 193 TFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDEL 252

Query: 458 I 458
           +
Sbjct: 253 V 253


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 158/309 (51%), Gaps = 5/309 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L++ M+  G+ PSV V+   + A+  +G L EA     +M+ + +   +V  Y+ILI + 
Sbjct: 161 LYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKL-NVPFNVVIYNILIDAY 219

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK---KFEEMESSFSAMVESGGC 252
            +  + +  E ++ EM   GI+ +  TYN +I GY +AK   +F   E     M E+ G 
Sbjct: 220 GRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEM-EASGL 278

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
           +PD+ T   ++ AYG+ G  E+ E+ +N     GV+ +  +   L  +Y      +K   
Sbjct: 279 YPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAAR 338

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
             + ++K+   PTV TY  +++ + +AG +E ++  +K MK  G     +TY +++ A+ 
Sbjct: 339 AFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQ 398

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           K G   +   ++ + +N     D   +N ++++Y + G   K  ++ L MK    +PD+ 
Sbjct: 399 KQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSF 458

Query: 433 TFATMIQAY 441
           T+ T+I  +
Sbjct: 459 TYCTLIYGF 467



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 179/389 (46%), Gaps = 17/389 (4%)

Query: 72  KYKNLWPKPVLEAL--DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ 129
           K+ N+    +LEAL  D+  +Q      L  F  +R  +      ++FT L   LG+   
Sbjct: 31  KFSNVQANIILEALCGDDLTEQ-----VLSFFRWVRLHEPCLCDPRSFTILFTFLGRMAM 85

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD-EAFSTINDMKSVSDCKPDVYTY 188
           P+QA + F ++  D    SV VY  L++        D E +  +    +  +  PD  T+
Sbjct: 86  PDQALVFFGMLPKDKQFHSVHVYNTLITCLTNCNRYDLELYHNL----AFYEVFPDSVTF 141

Query: 189 SILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           S+L+ S  K       +  +  +M   GI  S   + T I  +  A + +E     + M 
Sbjct: 142 SVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEM- 200

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-- 305
           E      ++   N +I AYG  G +E+ E    E    G++ ++ T N L   Y  A   
Sbjct: 201 EKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPK 260

Query: 306 -MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
             +     +++ M+    +P VVT+ +++  +G  G  E+ E+ F +MK RG++PNS +Y
Sbjct: 261 RQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSY 320

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L++AY++     K       +    V      +  ++ AY +AGD+E +  ++ +MK 
Sbjct: 321 TALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKV 380

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNL 453
             CV   +T+ T++ A+   G  + A++L
Sbjct: 381 EGCVATRVTYMTILDAFQKQGRYKEARDL 409


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 184/389 (47%), Gaps = 37/389 (9%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q   Q    T+ +L     +    E+A+   + M S GL P+   Y  +++AYG  G +
Sbjct: 306 EQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKV 365

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           DEA +  + MK  S C P+V TY+ ++    K  RF ++ ++L EMS  G   + VT+NT
Sbjct: 366 DEALALFDQMKK-SGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNT 424

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++   GK +  E+  +     ++S G      T N++I+AYG  G+     K YNE    
Sbjct: 425 MLAVCGK-RGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSA 483

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---- 341
           G    + T N L     R G +   +S++  M+ + F P   +Y+++++ + K G+    
Sbjct: 484 GFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGI 543

Query: 342 --IEK-----------------------------MEEYFKKMKHRGMKPNSITYCSLVSA 370
             IEK                             +E+ F+++K RG  P+ + + S++S 
Sbjct: 544 DAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSM 603

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y+K G+  KV  I   ++ S +  D   +N ++  Y +  +  +  ++   +K     PD
Sbjct: 604 YAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPD 663

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIA 459
            +++ T+I  +   G+ + AQ + ++MIA
Sbjct: 664 VVSYNTVINGFCKQGLIKEAQRILSEMIA 692



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 158/361 (43%), Gaps = 5/361 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +T ++  L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + D
Sbjct: 174 RAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLD 233

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               +  +PD +T S +I +C +    D       ++   G     VTYN ++  +GKA 
Sbjct: 234 EMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAG 293

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E       M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T 
Sbjct: 294 NYTEALRVLKEM-EQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTY 352

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +YG  G  D+  ++ D M+K    P V TYN ++   GK      M E   +M  
Sbjct: 353 NTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSR 412

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +T+ ++++   K G+   V  +L  +++  V L    +N +I+AYG+ G    
Sbjct: 413 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTN 472

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQ 470
             +++  M      P   T+  ++   +  G    AQ++ +KM        + S   L+Q
Sbjct: 473 AFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQ 532

Query: 471 C 471
           C
Sbjct: 533 C 533



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 176/430 (40%), Gaps = 72/430 (16%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           +I  LL + +        FT   V+   C+    ++A   FE + + G  P V  Y AL+
Sbjct: 227 RIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALL 286

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             +G++G   EA   + +M+    C+PD  TY+ L  +  +   ++   K L  M+  G+
Sbjct: 287 QVFGKAGNYTEALRVLKEMEQ-DGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGL 345

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------------------------- 250
             +A TYNT++  YG   K +E  + F  M +SG                          
Sbjct: 346 LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLE 405

Query: 251 --------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC P+  T N+M++  G  G  + + +        GV+    T N L  +YG
Sbjct: 406 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYG 465

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G       + + M    F P + TYN ++    + G     +    KM+ +G KPN  
Sbjct: 466 RCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQ 525

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVIL----------------------- 394
           +Y  L+  Y+K G I  +D+I ++V       S VIL                       
Sbjct: 526 SYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEV 585

Query: 395 -------DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
                  D   FN ++S Y + G   K+ E+F ++K+    PD IT+ +++  Y     +
Sbjct: 586 KARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSES 645

Query: 448 EAAQNLENKM 457
             A+ + N++
Sbjct: 646 WEAEKILNQL 655



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 145/294 (49%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +V A G+ G  D   + +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 143 VVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQ 202

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A    G +++
Sbjct: 203 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDE 262

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              ++ +    G    + T N L + +G+AG Y +   V+  M++    P  VTYN +  
Sbjct: 263 AVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAG 322

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY   G + +  ++  Q++ S  + 
Sbjct: 323 TYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVP 382

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   +N I+   G+      M E+   M    C P+ +T+ TM+      GM +
Sbjct: 383 NVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMED 436



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 37/315 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G+C     A  ++  M S G  P +  Y AL++   + G    A S ++ M
Sbjct: 456 TYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKM 515

Query: 176 KSVSDCKPDVYTYSILIKSCTK-----------------------------------FHR 200
           ++    KP+  +YS+L++   K                                     R
Sbjct: 516 RT-KGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRR 574

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              IEK   E+   G     V +N+++  Y K   + ++   F ++ +SG   PD+ T N
Sbjct: 575 LGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSG-LSPDLITYN 633

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S++  Y       + EK  N+     VK D+ + N +   + + G+  + + ++  M   
Sbjct: 634 SLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIAD 693

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VVTY+ ++  +       +  E    M    +KP  +TY  +V +Y KA    + 
Sbjct: 694 GMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEA 753

Query: 381 DSILRQVENSDVILD 395
            S L +V  +D   D
Sbjct: 754 RSFLSEVSETDPNFD 768


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 37/345 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +  ++L +++ S G+ P V  Y +L+  Y + GL+  A   ++DM++   CKP+VY+Y+I
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRN-KGCKPNVYSYTI 429

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+    K  + D    +L EMS  G++ + V +N +I  + K  +  E    F  M   G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489

Query: 251 GCHPDIFTLNSMIS-----------------------------------AYGNSGNIEKM 275
            C PD++T NS+IS                                   A+   G I++ 
Sbjct: 490 -CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K  NE    G   D  T N L K   RAG  DK RS+ + M +    P+ ++ NI+I  
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             ++G +E+  E+ K+M  RG  P+ +T+ SL++   +AG I    ++ R+++   +  D
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           T  FN ++S   + G V     L     E   VP++ T++ ++Q+
Sbjct: 669 TVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 5/342 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  L+  L KC +  +A  L E M   G  P  + +  ++    +   ++EA   +N M 
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +    PD  TY  L+    K  R D  + +   +    I    V +NT+I G+    + 
Sbjct: 315 -IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRL 369

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++ ++  S MV S G  PD+ T NS+I  Y   G +    +  ++    G K ++ +  I
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G  D+  +V++ M      P  V +N +I  F K   I +  E F++M  +G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            KP+  T+ SL+S   +   I     +LR + +  V+ +T  +N +I+A+ + G++++  
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 549

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +L   M  +    D IT+ ++I+     G  + A++L  KM+
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/364 (17%), Positives = 156/364 (42%), Gaps = 6/364 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++++F     Q  Y+     +  L+  LG   + +    L   M  +G+     ++ +++
Sbjct: 94  SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y ++G   +    + +M++V  C+P   +Y+++++     +   +   +  +M    I
Sbjct: 154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 213

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +  T+  ++  +    + +   S    M + G C P+     ++I +      + +  
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG-CVPNSVIYQTLIHSLSKCNRVNEAL 272

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +   E  LMG   D +T N +     +    ++   +++ M  R F P  +TY  ++   
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILD 395
            K G ++  ++ F    +R  KP  + + +L+  +   G +    ++L  +  S  ++ D
Sbjct: 333 CKIGRVDAAKDLF----YRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 388

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +N +I  Y + G V    E+   M+ + C P+  ++  ++  +  LG  + A N+ N
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448

Query: 456 KMIA 459
           +M A
Sbjct: 449 EMSA 452


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 160/316 (50%), Gaps = 2/316 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ P +  Y  L+SAY   GL++EAF  ++ M S     P VYTY+ +I    K  +++ 
Sbjct: 255 GVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPS-KGFSPGVYTYNTVINGLCKHGKYER 313

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            +++ AEM   G+   + TY +++    K     E E+ FS M  S    PD+   +SM+
Sbjct: 314 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDM-RSRDVVPDLVCFSSMM 372

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S +  SGN++K   ++N     G+  D     IL + Y R GM  +  ++ + M ++   
Sbjct: 373 SLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCA 432

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             VVTYN ++    K   + + ++ F +M  RG+ P+S T   L+  + K G +     +
Sbjct: 433 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMEL 492

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            ++++   + LD   +N ++  +G+ GD++   E++  M  +  +P  I+F+ ++ A  +
Sbjct: 493 FKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCS 552

Query: 444 LGMTEAAQNLENKMIA 459
            G    A  + ++MI+
Sbjct: 553 KGHLSEAFRVWDEMIS 568



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 114/212 (53%)

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           +   G   +++TLN M++A    G +EK+  + +E    GV  DI T N L  +Y   G+
Sbjct: 216 ISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGL 275

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            ++   +M  M  + F P V TYN VI    K G  E+ +E F +M   G+ P+S TY S
Sbjct: 276 MEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 335

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    K G  ++ ++I   + + DV+ D   F+ ++S + ++G+++K    F ++KE  
Sbjct: 336 LLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 395

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +PDN+ +  +IQ Y   GM   A NL N+M+
Sbjct: 396 LIPDNVIYTILIQGYCRKGMISEAMNLRNEML 427



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 159/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  L+    + ++  +A   F ++ S G   S+D   AL+ +  + G ++ A+    ++
Sbjct: 157 VFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEI 216

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S S    +VYT +I++ +  K  + + +   L+E+   G+    VTYNT+I  Y     
Sbjct: 217 -SRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGL 275

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE      AM  S G  P ++T N++I+     G  E+ ++ + E    G+  D  T  
Sbjct: 276 MEEAFELMHAM-PSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 334

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     + G   +  ++   M+ R   P +V ++ ++  F ++G+++K   YF  +K  
Sbjct: 335 SLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 394

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+++ Y  L+  Y + G+I +  ++  ++      +D   +N I+    +   + + 
Sbjct: 395 GLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 454

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +LF  M ER   PD+ T   +I  +  LG  + A  L  KM
Sbjct: 455 DKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKM 496



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 169/372 (45%), Gaps = 7/372 (1%)

Query: 90  KQKKWQLALKIFG-LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           K  K++ A ++F  +LR          T+  L++   K     +   +F  M S  + P 
Sbjct: 307 KHGKYERAKEVFAEMLRSG--LSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPD 364

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           +  +++++S + +SG LD+A    N +K  +   PD   Y+ILI+   +         + 
Sbjct: 365 LVCFSSMMSLFTRSGNLDKALMYFNSVKE-AGLIPDNVIYTILIQGYCRKGMISEAMNLR 423

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM   G     VTYNTI+ G  K K   E +  F+ M E G   PD +TL  +I  +  
Sbjct: 424 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERG-LFPDSYTLTILIDGHCK 482

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            GN++   + + +     +K D+ T N L   +G+ G  D  + +   M  +   PT ++
Sbjct: 483 LGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPIS 542

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           ++I++      GH+ +    + +M  + +KP  +   S++  Y ++G     +  L ++ 
Sbjct: 543 FSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMI 602

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNITFATMIQAYNALGM 446
           +   + D   +N +I  + +  ++ K   L   M+E+    VPD  T+ +++  +     
Sbjct: 603 SEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQ 662

Query: 447 TEAAQNLENKMI 458
            + A+ +  KMI
Sbjct: 663 MKEAEAVLRKMI 674



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 39/352 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ +M +  +    ++A + F  +   GL P   +YT L+  Y + G++ EA +  N+M 
Sbjct: 368 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEML 427

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--------------------- 215
               C  DV TY+ ++    K       +K+  EM+  G                     
Sbjct: 428 Q-QGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNL 486

Query: 216 --------------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                         I+   VTYNT++DG+GK    +  +  ++ MV S    P   + + 
Sbjct: 487 QNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISFSI 545

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++A  + G++ +  + ++E     +K  +   N + K Y R+G        ++ M    
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCSLVSAYSKAGLIMK 379
           F P  ++YN +I  F K  ++ K     KKM  K  G+ P+  TY S++  + +   + +
Sbjct: 606 FVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKE 665

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            +++LR++    V  D   +  +I+ +    ++ +       M +R   PD+
Sbjct: 666 AEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 111/256 (43%), Gaps = 18/256 (7%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN------- 271
           ++++ + +I    ++ +  + +S    M+   G    +  +NS++S Y N G+       
Sbjct: 102 TSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGV-SRVEIVNSLVSTYSNCGSNDSVFDL 160

Query: 272 -------IEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
                    K+ + Y  F L+   G    I   N L  S  R G  +    +   + +  
Sbjct: 161 LIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSG 220

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
               V T NI++    K G +EK+  +  +++ +G+ P+ +TY +L+SAYS  GL+ +  
Sbjct: 221 VGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAF 280

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++  + +         +N +I+   + G  E+  E+F  M      PD+ T+ +++   
Sbjct: 281 ELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 340

Query: 442 NALGMTEAAQNLENKM 457
              G     +N+ + M
Sbjct: 341 CKKGDAVETENIFSDM 356



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDC 181
           G C+        +  E M+S+G  P    Y  L+  + +   + +AF  +  M+      
Sbjct: 584 GYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGL 643

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            PDV+TY+ ++    + ++    E +L +M   G+     TY ++I+G+       E   
Sbjct: 644 VPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFR 703

Query: 242 SFSAMVESGGCHPDIF 257
               M++ G    D F
Sbjct: 704 FHDEMLQRGFSPDDKF 719


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 172/365 (47%), Gaps = 3/365 (0%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E   +  W  AL++F  +++QQW +     +T ++ ++G+    E+ S +FE M  + +K
Sbjct: 55  EFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVK 114

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            +V  +TAL++AYG++G  + +   +  MK     +P++ TY+ ++ +C+K    ++ + 
Sbjct: 115 WNVYAFTALINAYGRNGQYEASLHLLARMKK-ERVEPNLITYNTVLNACSKGGLDWEGLL 173

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + A+M + GI+   +TYNT++         E+    F  M ESG    D  T  S++  
Sbjct: 174 NLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESG-VVADAVTYKSLVDT 232

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +  S  + ++E+   E    G   DI   N L ++Y  AG       V   MQ+    P 
Sbjct: 233 FAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPD 292

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TY+ ++  +G  G  E++   F  MK     P   TY SL+  + + G   +  ++  
Sbjct: 293 VETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFH 352

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + +S V  D   ++ ++S  G+ G   +  ++   M      P     A +I +Y  + 
Sbjct: 353 DMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMA 412

Query: 446 MTEAA 450
           M + A
Sbjct: 413 MYKDA 417



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 7/372 (1%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  L +F  +R +   Q    T+  L+         EQA+++F+ M   G+      Y 
Sbjct: 169 WEGLLNLFAQMRHEG-IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYK 227

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           +LV  +  S  L      + +M+   +  PD+  Y+ LI++            +  +M  
Sbjct: 228 SLVDTFAGSNQLGRVEELLREMEDEGN-SPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR 286

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G      TY+T++  YG    FE++ S FS M E     P + T NS+I  +G  G  +
Sbjct: 287 GGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELS-TPPTVATYNSLIQVFGEGGYFQ 345

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           +    +++    GVK D  T + L    GR G+  +   +   M      P++     +I
Sbjct: 346 ESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLI 405

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
            ++GK    +     + +++  G+ P    Y +L+  Y+K GL ++  S L  +  +   
Sbjct: 406 SSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQ 465

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQN 452
                 N ++ AY + G  ++  E F  ++++     D  T  T++  Y  +G+ E A+ 
Sbjct: 466 APVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAK- 524

Query: 453 LENKMIAMKENS 464
              + + +KE S
Sbjct: 525 --EEFVIIKETS 534



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 7/347 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+       Q  +   L   M  +G  P +  Y +L+ AY  +G +  A      M
Sbjct: 225 TYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQM 284

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C PDV TYS L++       F+ +  + ++M  L    +  TYN++I  +G+   
Sbjct: 285 QR-GGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGY 343

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E  + F  MV+SG   PD  T ++++S  G  G   +  K +           ++   
Sbjct: 344 FQESINLFHDMVDSG-VKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASA 402

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  SYG+  MY         +++    P V  Y+ +I+ + K G   +       M   
Sbjct: 403 GLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKA 462

Query: 356 GMKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           G +    +  S++ AYSK GL    ++  S L+Q E S+V  D      ++  Y   G +
Sbjct: 463 GFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEV--DERTHETLLGVYCDMGLL 520

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           E+  E F+ +KE   VP    +  ++         + A  L ++MIA
Sbjct: 521 EEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLLDEMIA 567


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 166/351 (47%), Gaps = 3/351 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T LM +L K      A  LFE M     +P V  YT L+   G++G LDEA++
Sbjct: 258 QPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYN 317

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             ++M+    C+PD    + +I    K  R D   K+  EM  L    S VTYNTII   
Sbjct: 318 FFHEMRR-EGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKAL 376

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M +  G  P  FT + +I  +  +   EK      E +  G   
Sbjct: 377 FESKSRVSEISSWFERM-KGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPP 435

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++   + F
Sbjct: 436 CPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLF 495

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  PN   Y +L+S  ++AG++ +  + +R++++   I D   +N I++A  + 
Sbjct: 496 DEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKT 555

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           G  ++   +   MK+    PD +++ T++ A +  GM E A  L  +M A+
Sbjct: 556 GGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAI 606



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            + ++ MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M 
Sbjct: 158 LSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMS 217

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C PD  TYS LI +  K  R D    +L EM   G++ +A  Y  ++       + 
Sbjct: 218 NEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNV 277

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G +++   +++E    G + 
Sbjct: 278 HGALGLFEEMRHQY--------CRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRP 329

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    + + M+     P+VVTYN +I+  F     + ++  +
Sbjct: 330 DTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSW 389

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+  TY  L+  + K     K   +L +++          +  +I A G+
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE         +A MI+     G  + A +L ++M
Sbjct: 450 AKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEM 498



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 154/348 (44%), Gaps = 39/348 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R Q + +    T+T+L+  LGK  + ++A   F  M  +G +P   +   ++
Sbjct: 280 ALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMI 338

Query: 157 SAYGQSGLLDEAFSTINDMKSV-----------------------------------SDC 181
           +  G++G LD+A     +M+++                                   S  
Sbjct: 339 NFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGI 398

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++    
Sbjct: 399 SPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANE 458

Query: 242 SFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F  + E+ G     ++ +  MI   G +G ++     ++E N +G   ++   N L   
Sbjct: 459 LFQELKENCGSSSARVYAV--MIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSG 516

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             RAGM D+  + M  MQ     P + +YNI++    K G  ++       MK   +KP+
Sbjct: 517 LARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPD 576

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           +++Y +++ A S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 577 AVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGK 624



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESS 242
           D  TY  LI+      ++  + K++ EM    +   + +  + II   G AK   +  + 
Sbjct: 118 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAI 177

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSY 301
           F   +++  C P     NSMI    + G  EK+ + YNE +  G    D  T + L  ++
Sbjct: 178 FYQ-IKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAF 236

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G  D    +++ M+     PT   Y +++    K  ++      F++M+H+  +P+ 
Sbjct: 237 CKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDV 296

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY  L+    KAG + +  +   ++       DT   N +I+  G+AG ++   +LF  
Sbjct: 297 FTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEE 356

Query: 422 MKERHCVPDNITFATMIQA 440
           M+   C+P  +T+ T+I+A
Sbjct: 357 METLRCIPSVVTYNTIIKA 375


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 173/381 (45%), Gaps = 50/381 (13%)

Query: 122 VMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G CK  E  +   LFE ++  G  P V  Y  L+ +  ++G L+EA     DM S S
Sbjct: 222 IINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRS 281

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEM---------------SYLGIEC------ 218
            C P+V TYS+LI    K  R D   +++ EM               S+L   C      
Sbjct: 282 -CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTA 340

Query: 219 ------------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                               VT++T+IDG  K  + +E  S F  M+ +GG  P++ T N
Sbjct: 341 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI-AGGYVPNVITYN 399

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++++    +  +E+           GV  D+ T ++L  ++ +A   D+   ++  M  R
Sbjct: 400 ALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 459

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCSLVSAYSKAGLIM 378
              P VVT+N +I+   K+    +  + F  M  KH G+ P+ ITYC+L+    + G   
Sbjct: 460 GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKH-GLVPDKITYCTLIDGLFRTGRAG 518

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           + +++L  + +     DT  FNC I+   + GDV +  +++  M E   VPD +TF  +I
Sbjct: 519 QAEALLDAMPDP----DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILI 574

Query: 439 QAYNALGMTEAAQNLENKMIA 459
                 G  E A  L  +M+A
Sbjct: 575 AGACKAGNFEQASALFEEMVA 595



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 190/412 (46%), Gaps = 14/412 (3%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQ 108
           L K+ R + A + I++   ++K  ++ P  +     LD   KQ     A ++   LR   
Sbjct: 296 LCKVGRIDEARELIQEM--TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 353

Query: 109 W-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
                   TF+ L+  L KC Q ++A  +F+ M++ G  P+V  Y ALV+   ++  ++ 
Sbjct: 354 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMER 413

Query: 168 AFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           A + I  M  K V+   PDV TYS+L+ +  K  R D   ++L  M+  G   + VT+N+
Sbjct: 414 AHAMIESMVDKGVT---PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNS 470

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           IIDG  K+ +  E    F  M    G  PD  T  ++I     +G   + E   +     
Sbjct: 471 IIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP-- 528

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
               D    N       + G   +   V + M +    P  VT+NI+I    KAG+ E+ 
Sbjct: 529 --DPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQA 586

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              F++M  + ++P+ +T+ +L+    KAG +     IL  + N  V  +   +N ++  
Sbjct: 587 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ++G +E+  +    M    CVPD+IT+ +++ A      T+ A  L +++
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 698



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 198/453 (43%), Gaps = 57/453 (12%)

Query: 51   LSKILRTEFAIKNIEKKVSSKKYKN-LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW 109
            L K  R E A + +E+ VSS    + +    ++ AL  A +      AL++   L+   W
Sbjct: 647  LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDD---ALQLVSELKSFGW 703

Query: 110  YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
                  T+  L+  L K  Q EQA  + E M+  G  P V  Y  L+ +  ++G L+EA 
Sbjct: 704  -DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEAR 762

Query: 170  STINDMKS-VSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEM---------------S 212
                DM S VS C  P+V TYS+LI    K  R D   +++ EM               S
Sbjct: 763  RLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNS 822

Query: 213  YLGIEC------------------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            +L   C                          VT++T+IDG  K  + +E  + F  M+ 
Sbjct: 823  FLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMI- 881

Query: 249  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
            +GG  P++ T N +++    +  +E+           GV  D+ T ++L  ++ +A   D
Sbjct: 882  AGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVD 941

Query: 309  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCS 366
            +   ++  M  R   P VVT+N +I+   K+    +  + F  M  KH G+ P+ ITYC+
Sbjct: 942  EALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKH-GLAPDKITYCT 1000

Query: 367  LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
            L+    + G   + + +L  + + D    T  FNC I+   + GDV +       M E  
Sbjct: 1001 LIDGLFRTGWAGQAEVLLDAMPDPD----TYAFNCCINGLSKLGDVSRA---LHRMLELE 1053

Query: 427  CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             VPD +TF  +I      G  E A  L  +M+A
Sbjct: 1054 LVPDKVTFNILIAGACKAGNFEQASALFEEMVA 1086



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 175/393 (44%), Gaps = 19/393 (4%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARC----------QTFTKLMVMLGKCKQPEQA 133
           AL   +   K      I GL R  +  QA              F   +  L K     +A
Sbjct: 492 ALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRA 551

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             ++  ML   L P    +  L++   ++G  ++A +   +M +  + +PDV T+  LI 
Sbjct: 552 LQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA-KNLQPDVMTFGALID 610

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
              K  + +    IL  M  LG+  + VTYN ++ G  K+ + EE       MV SG C 
Sbjct: 611 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG-CV 669

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD  T  S++ A   +   +   +  +E    G   D  T NIL     ++G  ++  +V
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK---PNSITYCSLVSA 370
           ++ M  +   P VVTYN +I++  KAG +E+       M  R  +   PN +TY  L++ 
Sbjct: 730 LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 371 YSKAGLIMKVDSILRQV--ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--H 426
             K G I +   +++++  ++ DV+ +   +N  +    +   + +  EL  ++++    
Sbjct: 790 LCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLR 849

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             PD +TF+T+I      G T+ A N+ + MIA
Sbjct: 850 VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA 882



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 167/372 (44%), Gaps = 44/372 (11%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    TF  L+  L K  Q E A  + ++M + G+ P+V  Y ALV    +SG ++EA  
Sbjct: 599 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQ 658

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            + +M S S C PD  TY  L+ +  +  R D   ++++E+   G +   VTYN ++DG 
Sbjct: 659 FLEEMVS-SGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 717

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA- 289
            K+ + E+  +    MV  G  HPD+ T N++I +   +G++E+  + + + +    +  
Sbjct: 718 WKSGQTEQAITVLEEMVGKGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCC 776

Query: 290 --DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYN--------------- 330
             ++ T ++L     + G  D+ R ++  M ++     P ++TYN               
Sbjct: 777 VPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEA 836

Query: 331 ----------------------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
                                  +I+   K G  ++    F  M   G  PN +TY  L+
Sbjct: 837 CELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLM 896

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
           +   K   + +  +++  + +  V  D   ++ ++ A+ +A  V++  EL   M  R C 
Sbjct: 897 NGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCT 956

Query: 429 PDNITFATMIQA 440
           P+ +TF ++I  
Sbjct: 957 PNVVTFNSIIDG 968



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 43/365 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F K + +L K   P +A  LF   L    +P+   Y+ L+ A  ++G   +   T+   
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAG--GDVERTLGFF 170

Query: 176 KSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           + +      V  Y+I+++S C        +E    EM+  G+  + VTYNTII+G  K+ 
Sbjct: 171 RRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSN 230

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +       F  +VE G  HPD+ T N++I +   +G++E+  + + + +      ++ T 
Sbjct: 231 ELGAGMELFEELVERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTY 289

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYN---------------------- 330
           ++L     + G  D+ R ++  M ++     P ++TYN                      
Sbjct: 290 SVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL 349

Query: 331 ---------------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                           +I+   K G I++    F  M   G  PN ITY +LV+   KA 
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + +  +++  + +  V  D   ++ ++ A+ +A  V++  EL   M  R C P+ +TF 
Sbjct: 410 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 469

Query: 436 TMIQA 440
           ++I  
Sbjct: 470 SIIDG 474



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 10/347 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           TF  ++  L K  +  +A  +F+ M L  GL P    Y  L+    ++G   +A + ++ 
Sbjct: 467 TFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDA 526

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       PD Y ++  I   +K        ++   M  L +    VT+N +I G  KA 
Sbjct: 527 MPD-----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAG 581

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            FE+  + F  MV +    PD+ T  ++I     +G +E      +    +GV  ++ T 
Sbjct: 582 NFEQASALFEEMV-AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTY 640

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     ++G  ++    ++ M      P  +TY  ++    +A   +   +   ++K 
Sbjct: 641 NALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKS 700

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P+++TY  LV    K+G   +  ++L ++       D   +N +I +  +AGD+E+
Sbjct: 701 FGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEE 760

Query: 415 MGELFLTMK---ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              L   M     R CVP+ +T++ +I     +G  + A+ L  +M+
Sbjct: 761 ARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMM 807



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 146/345 (42%), Gaps = 10/345 (2%)

Query: 121 MVMLGKCKQPEQASLLFEV----MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +V+   C+  E A  L E+    M  DG+ P++  Y  +++   +S  L        ++ 
Sbjct: 185 IVLQSLCRAGETARAL-EIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                 PDV TY+ LI S  K    +   ++  +MS      + VTY+ +I+G  K  + 
Sbjct: 244 ERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRI 302

Query: 237 EEMESSFSAMV-ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF--NLMGVKADIQT 293
           +E       M  +S    P+I T NS +          +  +         + V  D  T
Sbjct: 303 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 362

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + L     + G  D+  SV D M    + P V+TYN ++    KA  +E+     + M 
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G+ P+ ITY  LV A+ KA  + +   +L  + +     +   FN II    ++    
Sbjct: 423 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 482

Query: 414 KMGELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  ++F  M  +H  VPD IT+ T+I      G    A+ L + M
Sbjct: 483 EAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM 527



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 15/297 (5%)

Query: 85   LDEAIKQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
            LD   KQ     A ++   LR           TF+ L+  L KC Q ++A  +F+ M++ 
Sbjct: 824  LDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAG 883

Query: 144  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRF 201
            G  P+V  Y  L++   ++  ++ A + I  M  K V+   PDV TYS+L+ +  K    
Sbjct: 884  GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVT---PDVITYSVLVDAFCKASHV 940

Query: 202  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
            D   ++L  M+  G   + VT+N+IIDG  K+ +  E    F  M    G  PD  T  +
Sbjct: 941  DEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCT 1000

Query: 262  MISAYGNSGNIEKMEKWYNEFN-LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I     +G       W  +   L+    D  T        G + + D  R++   ++  
Sbjct: 1001 LIDGLFRTG-------WAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELE 1053

Query: 321  FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
               P  VT+NI+I    KAG+ E+    F++M  + ++P+ +T+ +L+    KAG +
Sbjct: 1054 LV-PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 1109



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 146/341 (42%), Gaps = 13/341 (3%)

Query: 125 GKCKQPEQASLLFEVM--LSDG---LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           G CKQ   A    E+M  L DG   + P    ++ L+    + G +DEA S  +DM +  
Sbjct: 332 GLCKQSMTAEAC-ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA-G 389

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              P+V TY+ L+    K  + +    ++  M   G+    +TY+ ++D + KA + +E 
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 449

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQTLNILT 298
                 M  S GC P++ T NS+I     S    +  + +++  L  G+  D  T   L 
Sbjct: 450 LELLHGMA-SRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLI 508

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               R G   +  +++D M      P    +N  I    K G + +  + + +M    + 
Sbjct: 509 DGLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELV 564

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+ +T+  L++   KAG   +  ++  ++   ++  D   F  +I    +AG VE   ++
Sbjct: 565 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 624

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              M      P+ +T+  ++      G  E A     +M++
Sbjct: 625 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVS 665



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           IF+ N  ++    SG+  K    +        + +  T + L ++  +AG  D  R++  
Sbjct: 111 IFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAG-GDVERTLGF 169

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK-KMKHRGMKPNSITYCSLVSAYSKA 374
           F + R    +V  YNIV+++  +AG   +  E F+ +M   G+ P  +TY ++++   K+
Sbjct: 170 FRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 375 ---GLIMKV-DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
              G  M++ + ++ +  + DV+     +N +I +  +AGD+E+   L   M  R CVP+
Sbjct: 230 NELGAGMELFEELVERGHHPDVVT----YNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            +T++ +I     +G  + A+ L  +M
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEM 312



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 29/227 (12%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T+  LM  L K  + E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M
Sbjct: 891  TYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM 950

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAK 234
             S   C P+V T++ +I    K  +     ++  +M+   G+    +TY T+IDG  +  
Sbjct: 951  AS-RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTG 1009

Query: 235  KFEEMESSFSAMVE-------------------SGGCH--------PDIFTLNSMISAYG 267
               + E    AM +                   S   H        PD  T N +I+   
Sbjct: 1010 WAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGAC 1069

Query: 268  NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
             +GN E+    + E     ++ D+ T   L     +AG  +    +M
Sbjct: 1070 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 178/398 (44%), Gaps = 40/398 (10%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W    KI GLL + +        FT   V+   G+    ++A   F  + S G  P  
Sbjct: 259 RSWN---KILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGT 315

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y AL+  +G++G+  EA S + +M+  ++C PD  TY+ L+ +  +   ++    ++ 
Sbjct: 316 VTYNALLQVFGKAGIYSEALSIMKEMED-NNCPPDAVTYNELVAAYVRAGFYEEGAALID 374

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------- 250
            M+  GI+ +AVTY T+I+ YG+A + ++  S +  M ESG                   
Sbjct: 375 TMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKS 434

Query: 251 ---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                          GC P+  T N+M+S  GN G  + +++ + E    G + D  T N
Sbjct: 435 QSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFN 494

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  + GR G       + D M +  F P+V TYN ++    + G     E   K MK++
Sbjct: 495 TLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNK 554

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G KP+  +Y  ++++Y+K G +  ++ I + + +  +         +I A  +   +  M
Sbjct: 555 GFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGM 614

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              F  +++    PD + F +M+  ++   M + A  +
Sbjct: 615 ERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEI 652



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 170/369 (46%), Gaps = 4/369 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  +A K+F ++     Y    + +T ++    +C + E+A  +FE M   GL P++
Sbjct: 186 RESQHSIASKLFDVIPLDD-YSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTL 244

Query: 150 DVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  ++  YG+ G   ++    +++M+S      D +T S +I +C +    D  ++  
Sbjct: 245 VTYNVMLDVYGKMGRSWNKILGLLDEMRS-KGLGFDEFTCSTVISACGREGLLDEAKEFF 303

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             +   G     VTYN ++  +GKA  + E  S    M E   C PD  T N +++AY  
Sbjct: 304 VGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEM-EDNNCPPDAVTYNELVAAYVR 362

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  E+     +     G+K +  T   +  +YGRA   DK  S+ D M++    P V T
Sbjct: 363 AGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCT 422

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN ++   GK    E+M +    MK  G  PN IT+ +++S     G+   V  + ++++
Sbjct: 423 YNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMK 482

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +     D   FN +I+A G+ G      +++  M E    P   T+  ++ A    G   
Sbjct: 483 SCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWR 542

Query: 449 AAQNLENKM 457
            A+++   M
Sbjct: 543 TAESVIKDM 551



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 179/379 (47%), Gaps = 37/379 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    E+ + L + M  +G+KP+   YT +++AYG++  +D+A S  + M
Sbjct: 352 TYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQM 411

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S C P+V TY+ ++    K  + + + KIL +M   G   + +T+NT++   G    
Sbjct: 412 KE-SGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGM 470

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + ++  F  M +S G  PD  T N++I+A G  G+    EK Y+E    G    + T N
Sbjct: 471 HKYVKRVFQEM-KSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYN 529

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------IEK----- 344
            L  +  R G +    SV+  M+ + F P+  +Y++++ ++ K G+      IEK     
Sbjct: 530 ALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDG 589

Query: 345 ------------------------MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                   ME  F+ ++  G KP+ + + S++S +S+  +  + 
Sbjct: 590 HIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRA 649

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I+  ++   +  D   +N ++  Y + G+  K  E+   ++      D I++ T+I+ 
Sbjct: 650 HEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKG 709

Query: 441 YNALGMTEAAQNLENKMIA 459
           +   G+   A    ++MI+
Sbjct: 710 FCRQGLMHEALRTLSEMIS 728



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 14/346 (4%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFE-VMLSDGL------KPSVDVYTALVSAYG 160
           + +Q       K + + G C   E+A LLFE ++L+ G         +V++   ++    
Sbjct: 132 ELFQVDLIGVLKALDLSGDC---ERAILLFEWLVLNLGTGNVNLDNQAVELMARILGRES 188

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           Q  +  + F  I     + D   DV  Y+ ++ S ++  +++    I  +M+  G+  + 
Sbjct: 189 QHSIASKLFDVI----PLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTL 244

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTYN ++D YGK  +           + S G   D FT +++ISA G  G +++ ++++ 
Sbjct: 245 VTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFV 304

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
                G      T N L + +G+AG+Y +  S+M  M+     P  VTYN ++  + +AG
Sbjct: 305 GLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAG 364

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             E+       M   G+KPN++TY ++++AY +A  + K  S+  Q++ S    +   +N
Sbjct: 365 FYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYN 424

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
            I+   G+    E+M ++   MK   C P+ IT+ TM+      GM
Sbjct: 425 AILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGM 470



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           +LG+  Q   AS LF+V+  D     V  YT ++ +Y + G  + A +    M   S   
Sbjct: 183 ILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNE-SGLS 241

Query: 183 PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           P + TY++++    K  R ++ I  +L EM   G+     T +T+I   G+    +E + 
Sbjct: 242 PTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKE 301

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  + +S G  P   T N+++  +G +G   +      E        D  T N L  +Y
Sbjct: 302 FFVGL-KSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAY 360

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            RAG Y++  +++D M +    P  VTY  +I  +G+A  ++K    + +MK  G  PN 
Sbjct: 361 VRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNV 420

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY +++    K     ++  IL  ++      +   +N ++S  G  G  + +  +F  
Sbjct: 421 CTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQE 480

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           MK     PD  TF T+I A    G    A+ + ++M+
Sbjct: 481 MKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEML 517



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 2/295 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF  L+   G+C     A  +++ ML  G  PSV  Y AL++A  + G    A S I D
Sbjct: 491 DTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKD 550

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK+    KP   +YS+++ S  K      I +I  ++    I  S +   T+I    K +
Sbjct: 551 MKN-KGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCR 609

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               ME +F A+ +  G  PD+   NSM+S +      ++  +  +     G++ D+ T 
Sbjct: 610 ALAGMERAFQAL-QKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTY 668

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y R G   K   ++  +Q       +++YN VI+ F + G + +      +M  
Sbjct: 669 NSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMIS 728

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           RG++P  +TY + V  Y+  G+  ++D +L  +   D   +   +  ++  Y +A
Sbjct: 729 RGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA 783


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 165/351 (47%), Gaps = 15/351 (4%)

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +L+  L + ++  +   LF  M+  G         +L++   + G  +     +  M  +
Sbjct: 275 RLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEM 334

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS--------YLGIECSAVTYNTIIDGY 230
            D +P+V T+ ILI    KF R D   ++L +MS         + +E   V YNT+IDG 
Sbjct: 335 -DIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGL 393

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  + +E       M    GC PD  T N +I  +  +G IEK ++ ++E N  GV  +
Sbjct: 394 CKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPN 453

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFM---QKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + T+N L     R G   ++ S ++F    Q+R      VTY  +I  F    + EK  E
Sbjct: 454 VVTVNTLVGGMCRTG---RVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAME 510

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F +M   G  P++I Y +L+S +S+AG +     +L +++   +  DT  +N +I  + 
Sbjct: 511 LFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFC 570

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +     ++ E+   M+E    PD IT+ T+I   +  G  + AQ +  KMI
Sbjct: 571 RTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMI 621



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 9/329 (2%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVM--------LSDGLKPSVDVYTALVSAYGQS 162
           Q    TF  L+  + K ++ + A  + E M        +S  ++P V +Y  L+    + 
Sbjct: 337 QPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKV 396

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           G   E    +  M+S   C PD  TY+ LI    K    +  +++  EM+  G+  + VT
Sbjct: 397 GRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVT 456

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
            NT++ G  +  +      +F    +  G   D  T  ++I+A+ N  N EK  + +NE 
Sbjct: 457 VNTLVGGMCRTGRVSS-AVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM 515

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G   D      L   + +AG       V+  ++K    P  V YN +I  F +    
Sbjct: 516 LKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKF 575

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
            ++ E  K+M+  G+KP++ITY +L++  SK G +     ++R++  + V+     +  +
Sbjct: 576 HRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAV 635

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           I+AY   G+  +  E+F  MK    VP N
Sbjct: 636 INAYCLNGNGNEAMEIFKDMKAASKVPPN 664



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 5/366 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  + Q  L +   +R Q+       T+  L+    K  + E+   LF+ M  +G
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEG 449

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+V     LV    ++G +  A +   + +     K D  TY+ LI +    + F+  
Sbjct: 450 VAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR-RGMKGDAVTYTALINAFCNVNNFEKA 508

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS-AMVESGGCHPDIFTLNSMI 263
            ++  EM   G    A+ Y T+I G+ +A +  +  +SF  A ++  G  PD    N++I
Sbjct: 509 MELFNEMLKSGCSPDAIVYYTLISGFSQAGRMAD--ASFVLAELKKLGIRPDTVCYNTLI 566

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             +  +    ++ +   E    G+K D  T N L     + G     + VM  M K    
Sbjct: 567 GGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVV 626

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDS 382
           PTV TY  VI  +   G+  +  E FK MK    + PN++ Y  L+++  K   +    S
Sbjct: 627 PTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVS 686

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++  ++   V  +T  +N I        D+EK+ E    M E  C PD IT   + +  +
Sbjct: 687 LMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLS 746

Query: 443 ALGMTE 448
           A+G  E
Sbjct: 747 AVGEIE 752



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 3/286 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++  +    T+T L+         E+A  LF  ML  G  P   VY  L+S + Q+G +
Sbjct: 481 QRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRM 540

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            +A   + ++K +   +PD   Y+ LI    + ++F  + ++L EM   G++   +TYNT
Sbjct: 541 ADASFVLAELKKLG-IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNT 599

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNL 284
           +I    K    +  +     M+++G   P + T  ++I+AY  +GN  E ME + +    
Sbjct: 600 LIAYASKNGDLKFAQKVMRKMIKAG-VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAA 658

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
             V  +    NIL  S  +        S+M+ M+     P   TYN + +       +EK
Sbjct: 659 SKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEK 718

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           + E+  +M      P+ IT   L    S  G I ++   +   E S
Sbjct: 719 VFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKFVAGCEVS 764



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 160/429 (37%), Gaps = 116/429 (27%)

Query: 124 LGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-SV-- 178
           L  C+    A+L  L++      +  +V+  + L+ A G+S L++E+    ND+  SV  
Sbjct: 130 LAFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPSVKN 189

Query: 179 ---------------------------------SDCKPDVYTYSILIKSCTKFHRF---- 201
                                            S+C+P+  T  IL     K  R     
Sbjct: 190 TYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELL 249

Query: 202 --DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESSFSAMVESGGC 252
             D I  ++ +    G+  S+     +I    + +K       F EM     A++ES  C
Sbjct: 250 SEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEM-IKLGAVLESAAC 308

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK------------- 299
                  NS+++     GN  +M +   +   M ++ ++ T  IL               
Sbjct: 309 -------NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALE 361

Query: 300 ---------------------------------SYGRA----GMYDKMRSVMDFMQKRFF 322
                                              GR     G+ ++MRS      ++  
Sbjct: 362 VLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRS------QKGC 415

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  +TYN +I+ F KAG IEK +E F +M   G+ PN +T  +LV    + G +    +
Sbjct: 416 APDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVN 475

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              + +   +  D   +  +I+A+    + EK  ELF  M +  C PD I + T+I  ++
Sbjct: 476 FFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFS 535

Query: 443 ALG-MTEAA 450
             G M +A+
Sbjct: 536 QAGRMADAS 544



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFT--KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++F +L++ +    +  T T   L+    K    + A  +   M+  G+ P+V  Y A++
Sbjct: 577 RVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVI 636

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +AY  +G  +EA     DMK+ S   P+   Y+ILI S  K ++      ++ +M   G+
Sbjct: 637 NAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGV 696

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +  TYN I  G    K  E++      M+E   C+PD  T+  +       G IE+++
Sbjct: 697 TPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEH-ACNPDYITMEILTEWLSAVGEIERLK 755

Query: 277 KW 278
           K+
Sbjct: 756 KF 757


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
             + M+  GL+P   +Y  ++   G++ ++DEA      MKS+  C  D YTY+ILI+S 
Sbjct: 71  FLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMG-CPADDYTYAILIRSL 129

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  R +    +  EM   G   SA  Y  +ID Y KA + E        M++     PD
Sbjct: 130 GRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKN-LAPD 188

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
            +TLNS+I+A   +G  E   + +      GV  +  + N +    G+AG        MD
Sbjct: 189 DYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMD 248

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R   P  +T+N +I   G+A +  +  +  ++M+  G+ P+  TY  ++ A++KAG
Sbjct: 249 EMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG 308

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + K   +   +E +    +   +N +I A  +AG  +   +++  MK++  +PD IT A
Sbjct: 309 NMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT-A 367

Query: 436 TMIQ 439
           T++Q
Sbjct: 368 TVLQ 371



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 2/248 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  LG+CK+ E+A+LLF+ M   G  PS   YT ++  Y ++G ++ A   +  M
Sbjct: 121 TYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKM 180

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +  PD YT + LI + ++  R +L  +I   M   G+  + V++N ++D  GKA K
Sbjct: 181 LD-KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGK 239

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              +   F   +E+ G  P+  T N++I+  G +    +  K   E    G+  D+ T  
Sbjct: 240 VG-LAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYT 298

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + +++ +AG   K   +   M+K      VVTYN++I+   KAG  +   + +  MK +
Sbjct: 299 CMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKK 358

Query: 356 GMKPNSIT 363
           G+ P++IT
Sbjct: 359 GILPDAIT 366



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 128/302 (42%), Gaps = 40/302 (13%)

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V V  A+++AYG+S  + +      ++      KP+ YTY  +I+S  K     L    L
Sbjct: 14  VLVSNAVIAAYGRSSRIHKVMDEFQELDKHGS-KPNAYTYKCVIQSLVKAGNVVLAMDFL 72

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M   G+E                                    PD    N ++   G 
Sbjct: 73  DKMIKTGLE------------------------------------PDTLLYNVVLDGLGK 96

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  I++  K +     MG  AD  T  IL +S GR    ++   + D M++R   P+   
Sbjct: 97  ANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPA 156

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  VI+ + KAG IE      KKM  + + P+  T  SL++A S+ G       I  +++
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            S V ++T  FN ++   G+AG V    +    M+ R   P++ITF T+I   N LG  +
Sbjct: 217 KSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLI---NCLGRAK 273

Query: 449 AA 450
            A
Sbjct: 274 YA 275



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 4/231 (1%)

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
           A ++   C   +   N++I+AYG S  I K+   + E +  G K +  T   + +S  +A
Sbjct: 3   AAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKA 62

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G        +D M K    P  + YN+V++  GKA  I++  + F  MK  G   +  TY
Sbjct: 63  GNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTY 122

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             L+ +  +     +   +  ++E        P +  +I  Y +AG +E    +   M +
Sbjct: 123 AILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLD 182

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 471
           ++  PD+ T  ++I A +  G TE A  +  +M    +A+   S   ++ C
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDC 233



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           N +I  YG++ +  ++   F  + +  G  P+ +T   +I +   +GN+     + ++  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQEL-DKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMI 76

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D    N++    G+A M D+   +   M+         TY I+I + G+    E
Sbjct: 77  KTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDE 136

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +    F +M+ RG  P++  Y +++  Y KAG I     +L+++ + ++  D    N +I
Sbjct: 137 EATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA--MK 461
           +A  + G  E   E+F  MK+     + ++F  M+      G    A    ++M A  +K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 462 ENS 464
            NS
Sbjct: 257 PNS 259


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 175/392 (44%), Gaps = 47/392 (11%)

Query: 88  AIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS-DGLK 146
           A+ +  W+ AL  F  L +     +R      + V+LG   +  Q S+  EV L   G  
Sbjct: 164 AVGESSWRRALDAFEWLARSTAPASRA-----VAVVLGVLGRARQDSIAEEVFLRFAGEG 218

Query: 147 PSVDVYTALVSAYGQSGLLDEA------------------FSTINDMKSVSDC------- 181
            +V V+ A++  Y +SG  D+A                  F+T+ + +S S C       
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL 278

Query: 182 -----------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIID 228
                      +PDV TY+ LI +C++    +    +  EM  +  EC     TYN ++ 
Sbjct: 279 DLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEM--IASECRPDLWTYNAMVS 336

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            +G+  K EE E  F  +VE G   PD  T NS++ A+   GN++K+E    E    G K
Sbjct: 337 VHGRCGKAEEAERLFGELVEKG-FMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFK 395

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            +  T N +   YG+ G  D    + D M+     P  VTY ++I++ GK   I +  + 
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKV 455

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + M   G+KP  + + +L+ AY+K G     +     +  S V  D   +  ++  + +
Sbjct: 456 LEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFAR 515

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +G+ EKM  L+ TM   +  PD+  +  ++ A
Sbjct: 516 SGETEKMLRLYRTMMNDNYRPDDDMYQVLLVA 547



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 3/289 (1%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LLFEV  S GL+P V  Y  L+SA  QS  L++A +   +M + S+C+PD++TY+ ++  
Sbjct: 280 LLFEVRQS-GLRPDVITYNTLISACSQSSNLEDAVTVFEEMIA-SECRPDLWTYNAMVSV 337

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +  + +  E++  E+   G    AVTYN+++  + K    +++E +   +V++G    
Sbjct: 338 HGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKN 397

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +I T N+MI  YG  G ++     Y+E   +G   D  T  ++  S G+     +   V+
Sbjct: 398 EI-TYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVL 456

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M      PT+V ++ +I  + K G     E+ F  M   G+KP+ + Y  ++  ++++
Sbjct: 457 EDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           G   K+  + R + N +   D   +  ++ A  +    E++ E+   M+
Sbjct: 517 GETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDME 565



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 138/307 (44%), Gaps = 2/307 (0%)

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            ++ AL+ AY +SGL ++A +  ++M       P V + + ++++     R D +  ++ E
Sbjct: 782  IWNALIHAYAESGLYEKARAVFDNMIKTGPL-PTVDSVNGMMRALIVDGRLDELYVVVGE 840

Query: 211  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            +  +  + S  T   ++D + KA    E+   ++ M ++ G  P++    SM S   +  
Sbjct: 841  LQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRSMTSLLCHHN 899

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
                +E    E    G K D+   N L   Y  AG +D+   V   + +    P   TYN
Sbjct: 900  RFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYN 959

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  + ++   E+      +M  RG+ P   +Y SL++A +KA L  + D +  ++ + 
Sbjct: 960  TLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSK 1019

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               L+   ++ ++  Y  AG+  K   L   MKE    P   T   ++ +Y   G    A
Sbjct: 1020 SYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEA 1079

Query: 451  QNLENKM 457
            +N+ N +
Sbjct: 1080 ENVLNSL 1086



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 165/384 (42%), Gaps = 39/384 (10%)

Query: 92   KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
            K WQ A  +   LRQ      R   +  L+    +    E+A  +F+ M+  G  P+VD 
Sbjct: 760  KLWQQAEILVKGLRQASGIDRR--IWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDS 817

Query: 152  YTALVSAYGQSGLLDEAFSTINDMKSVSDCK----------------------------- 182
               ++ A    G LDE +  + +++ + D K                             
Sbjct: 818  VNGMMRALIVDGRLDELYVVVGELQDM-DFKISKSTVLLMLDAFAKAGDVFEVMKIYNGM 876

Query: 183  ------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                  P+++ Y  +       +RF  +E ++AEM   G +     +N++++ Y  A  F
Sbjct: 877  KAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNF 936

Query: 237  EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            +     + +++E+G   PD  T N++I  Y  S   E+     NE    G+   +Q+   
Sbjct: 937  DRTTQVYQSILEAG-LEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKS 995

Query: 297  LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
            L  +  +A + ++   + + M+ + +      Y+++++ +  AG+  K E     MK  G
Sbjct: 996  LLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDG 1055

Query: 357  MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            ++P   T   L+++Y  AG   + +++L  +++S + + T  ++ +  AY + GD +   
Sbjct: 1056 IEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGI 1115

Query: 417  ELFLTMKERHCVPDNITFATMIQA 440
            +  L MK     PD+  +   I+A
Sbjct: 1116 KKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 37/212 (17%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK- 344
           G  A +Q  N +   Y R+G +D  R ++D M  R   P +V++N +I    K+G +   
Sbjct: 216 GEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG 275

Query: 345 -MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
              +   +++  G++P+ ITY +L+SA S++  +    ++  ++  S+   D   +N ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMV 335

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPD--------------------------------- 430
           S +G+ G  E+   LF  + E+  +PD                                 
Sbjct: 336 SVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFK 395

Query: 431 --NITFATMIQAYNALGMTEAAQNLENKMIAM 460
              IT+ TMI  Y  +G  + A  L ++M A+
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAV 427



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 146/344 (42%), Gaps = 37/344 (10%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C  +  L+  L + +   +A  +F  M   G++ S ++Y +++S Y + G  + A   ++
Sbjct: 675 CNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMD 734

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           D  ++    P      + I SC                              II+ YG  
Sbjct: 735 D--ALQSGIP------LNILSCRVI---------------------------IIEAYGNI 759

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K +++ E     + ++ G    I+  N++I AY  SG  EK    ++     G    + +
Sbjct: 760 KLWQQAEILVKGLRQASGIDRRIW--NALIHAYAESGLYEKARAVFDNMIKTGPLPTVDS 817

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           +N + ++    G  D++  V+  +Q   F  +  T  ++++ F KAG + ++ + +  MK
Sbjct: 818 VNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMK 877

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PN   Y S+ S          V+ ++ ++E +    D   FN +++ Y  AG+ +
Sbjct: 878 AAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFD 937

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +++ ++ E    PD  T+ T+I  Y      E    L N+M
Sbjct: 938 RTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEM 981



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 131/325 (40%), Gaps = 12/325 (3%)

Query: 121 MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +VML    +  + E+   L+  M++D  +P  D+Y  L+ A  +    +E    I DM+ 
Sbjct: 507 LVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDMEL 566

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           +      V + +ILIK+        L++K   +    G +  A +  +I++ Y   +K E
Sbjct: 567 LCQMSLGVIS-TILIKARCVSQGGKLLKKACLQ----GYKPDAKSLWSIMNAYVMTEKHE 621

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E  S    + +      D+ +  S+I       +I   E++     L     +      L
Sbjct: 622 EGLSLLECIRDHVSSSQDLISECSIILLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEHL 681

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
                 A ++ +   V   MQ      +   Y  +I T+ K G  E            G+
Sbjct: 682 ITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDALQSGI 741

Query: 358 KPNSITYCS--LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            P +I  C   ++ AY    L  + + +++ +  +  I D   +N +I AY ++G  EK 
Sbjct: 742 -PLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGI-DRRIWNALIHAYAESGLYEKA 799

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             +F  M +   +P   +   M++A
Sbjct: 800 RAVFDNMIKTGPLPTVDSVNGMMRA 824


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 186/385 (48%), Gaps = 33/385 (8%)

Query: 108 QWYQARCQ------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           QW QA          +  ++ +L   ++   A  +FE  +  G+ PS D Y  L+S Y +
Sbjct: 11  QWMQALPDLKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMSGYTK 70

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL-----IEKILAEMSYLGI 216
            G L      +  M+  +   P V  Y+++++ CT+  R D+       +IL +M   G+
Sbjct: 71  CGSLQRGIGILQKMRE-AGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDM---GL 126

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           +  +VT+N I++   +  +  +++  + A++  G   PD+ T + +I+A+G + +  K++
Sbjct: 127 QQDSVTFNIIMNALNRVGRIRDVD-RYWALMRMGRIVPDLTTCSILINAFGRARDWHKVD 185

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM-----------DFMQKRFFFPT 325
               E    G+KAD+   N L   YG+AG++ ++  V+           D       F  
Sbjct: 186 LVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFD- 244

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           +VTYN +++ +GKAG ++ +  +F +MK  G++P+ +T+ SLV+AY KA        +L 
Sbjct: 245 LVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKAS--HYDGEVLE 302

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
                +   D  F+N ++  +G+ G      ++   MK    +P + T+ ++I A+   G
Sbjct: 303 LFRKYNYKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAF---G 359

Query: 446 MTEAAQNLENKMIAMKENSGKKLIQ 470
                Q  EN +  MK N  K + Q
Sbjct: 360 RGSQWQEAENTLERMKANGVKPVAQ 384



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 171/349 (48%), Gaps = 42/349 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T + L+   G+ +   +  L+   M + G+K  + +Y +L+S YG++GL  E    +  +
Sbjct: 167 TCSILINAFGRARDWHKVDLVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSL 226

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    + D+   S+          FDL                 VTYNT++D YGKA +
Sbjct: 227 RAEIARREDLGNSSL---------AFDL-----------------VTYNTLLDVYGKAGR 260

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS----GNIEKMEKWYNEFNLMGVKADI 291
            +++   F  M +SG   PD+ T +S+++AYG +    G + ++ + YN       K+D+
Sbjct: 261 LDDVIYWFGEMKKSG-VQPDVLTFDSLVNAYGKASHYDGEVLELFRKYN------YKSDL 313

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
              N L   +G+ G Y     +++ M+   F PT  TYN +I  FG+    ++ E   ++
Sbjct: 314 VFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLER 373

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G+KP + ++  L+ AYS +G I K + ++ +++  ++I      N ++  Y +AGD
Sbjct: 374 MKANGVKPVAQSFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAGHNSLLRFYMRAGD 433

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA-----AQNLEN 455
           +  + + + T + R   P+  +F  MI+A       +      AQ+LEN
Sbjct: 434 IGSIIQTYETCQTRGPKPNQSSFVPMIEALTKENTVDERFWGIAQDLEN 482



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y++    +  L+ M GK      A  + E M + G  P+ + Y +L+ A+G+     EA 
Sbjct: 309 YKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAE 368

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +T+  MK+ +  KP   ++S L+++ +   +    EK++ +M    +      +N+++  
Sbjct: 369 NTLERMKA-NGVKPVAQSFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAGHNSLLRF 427

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           Y +A     +  ++    ++ G  P+  +   MI A
Sbjct: 428 YMRAGDIGSIIQTYET-CQTRGPKPNQSSFVPMIEA 462


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 176/368 (47%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  D  I    +  +W+ A+ +   + +     +R  T+  L+   G      +A 
Sbjct: 175 KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSR-STYNNLINACGSSGNWREAL 233

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I  
Sbjct: 234 EVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYC 292

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +K  +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G 
Sbjct: 293 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGL 351

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + 
Sbjct: 352 KPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKE 411

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V   M+K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S
Sbjct: 412 VFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACS 471

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++   + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++
Sbjct: 472 RSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSV 531

Query: 433 TFATMIQA 440
           TF  +I  
Sbjct: 532 TFTILISG 539



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 183/394 (46%), Gaps = 11/394 (2%)

Query: 67  KVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126
           +V + +++  W   V E +D  +   +W+   ++ G+L       AR + F  L+  L +
Sbjct: 66  RVENDRFQKDWS--VSEVVDRLMALNRWE---EVDGVLNSWVGRFAR-KNFPVLIRELSR 119

Query: 127 CKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
               E    +F+ M +        D+Y  ++  + +   +D+A     +M+  S CKPD 
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDA 178

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY  LI +  +  ++     ++ +M    I  S  TYN +I+  G +  + E       
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKK 238

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M ++G   PD+ T N ++SAY +     K   ++       V+ D  T NI+     + G
Sbjct: 239 MTDNG-VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 306 MYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              +   + + M+++     P VVT+  ++  +   G IE     F+ M   G+KPN ++
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVS 357

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L+ AY+  G+     S+L  ++ + +I D   + C++++YG++    K  E+FL M+
Sbjct: 358 YNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMR 417

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +    P+ +T+  +I AY + G    A  +  +M
Sbjct: 418 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 165/351 (47%), Gaps = 44/351 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           AL +F  +R+++   A C+    TFT +M +     + E    +FE M+++GLKP++  Y
Sbjct: 302 ALDLFNSMREKR---AECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSY 358

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+   A S + D+K  +   PDV                           
Sbjct: 359 NALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV--------------------------- 390

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                   V+Y  +++ YG++++  + +  F  M+      P++ T N++I AYG++G +
Sbjct: 391 --------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  + + +    G+K ++ ++  L  +  R+     + +V+   Q R        YN  
Sbjct: 442 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I ++  A  +EK    ++ M+ + +K +S+T+  L+S   +     +  S L+++E+  +
Sbjct: 502 IGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            L    ++ ++ AY + G V +   +F  MK   C PD I + +M+ AYNA
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNA 612



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     +++    + E      K D +T + L  ++GRAG +    ++M
Sbjct: 144 DIY--NMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLM 201

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+  +  E  KKM   G+ P+ +T+  ++SAY   
Sbjct: 202 DDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSG 261

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  S    ++ + V  DT  FN II    + G   +  +LF +M+E+   C PD +
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF +++  Y+  G  E  + +   M+A
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVA 348



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 140/352 (39%), Gaps = 38/352 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A++IF  + +Q   +    +   L+    + K+      +     S G+  +   Y + +
Sbjct: 444 AVEIFRQM-EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI 502

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +Y  +  L++A +    M+     K D  T++ILI    +  ++      L EM  L I
Sbjct: 503 GSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +   Y++++  Y K  +  E ES F+ M +  GC PD+    SM+ AY  S    K  
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTSMLHAYNASEKWGKAC 620

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFP----- 324
           + + E    G++ D    + L +++ + G    +  +MD M+++        FF      
Sbjct: 621 ELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSAC 680

Query: 325 -----------------------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                                  ++   N ++  FGK+G +E M + F K+   G+  N 
Sbjct: 681 NTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINL 740

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            TY  L+      G   K   +L  +  + +      +  IIS   ++  +E
Sbjct: 741 KTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 792


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 40/382 (10%)

Query: 115 QTFTKLMVMLGKCKQP--EQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFS 170
             F+  +++ G C     ++A  LF++M  +G    P+V  Y  ++  + + G   +A S
Sbjct: 227 NVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACS 286

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             ++M +    KPDV TY+++I +  K    D  E +L +M+  G +   VTYN +I GY
Sbjct: 287 LFHEM-TRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGY 345

Query: 231 GKAKKFEEMESSFSAMVESG----------------------------------GCHPDI 256
               + +E    F  M   G                                  G  PDI
Sbjct: 346 ATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDI 405

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            +  +++  Y + G    M   +N     G+ AD +  NIL  +Y + GM D    +   
Sbjct: 406 VSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTE 465

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           MQ++   P VVTY+ VI  F + G +    E F +M  RG++PN+  Y S++  +   G 
Sbjct: 466 MQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGG 525

Query: 377 IMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++K   ++ ++ N  +   D  FFN +I++  + G V    ++F  + +    PD ITF 
Sbjct: 526 LVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFT 585

Query: 436 TMIQAYNALGMTEAAQNLENKM 457
           ++I  Y  +G  + A  + + M
Sbjct: 586 SLIDGYCLVGKMDKAFKILDAM 607



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 170/370 (45%), Gaps = 7/370 (1%)

Query: 96  LALKIFG-LLRQQQWYQA---RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           LAL +F  + R+Q   +       T++ LM    + ++P+   +LF  +L  GLK     
Sbjct: 135 LALALFNRVCREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQIT 194

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            + L+     +   +EA + +    S   C P+V++YSI++K             +   M
Sbjct: 195 ASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMM 254

Query: 212 SYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +  G  CS   V YNT+I G+ K  +  +  S F  M   G   PD+ T N +I A   +
Sbjct: 255 AKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQG-VKPDVVTYNLIIDALCKA 313

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             ++K E    +    G + D  T N +   Y   G   +   +   M+ R   P +V  
Sbjct: 314 RAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVIC 373

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N  + +  K G  ++  E F  M  +G KP+ ++YC+L+  Y+  G    +  +   +++
Sbjct: 374 NSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKS 433

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           + +  D   FN +I AY + G V+    +F  M+++   PD +T++T+I A++ +G    
Sbjct: 434 NGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTD 493

Query: 450 AQNLENKMIA 459
           A    N+M+A
Sbjct: 494 AMEKFNQMVA 503



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 160/385 (41%), Gaps = 22/385 (5%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   + ++  L L +FG + +      +    T L  +    +  E  ++L   M   G
Sbjct: 164 MDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELG 223

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILI----------K 193
             P+V  Y+ ++     + +   A      M K    C P+V  Y+ +I          K
Sbjct: 224 CVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGK 283

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
           +C+ FH          EM+  G++   VTYN IID   KA+  ++ E     M  +G   
Sbjct: 284 ACSLFH----------EMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGA-Q 332

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD  T N MI  Y   G +++  K + +    G+  +I   N    S  + G   +   +
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI 392

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            D M  +   P +V+Y  ++  +   G    M   F  MK  G+  +   +  L+ AY+K
Sbjct: 393 FDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAK 452

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G++     I  +++   V  D   ++ +ISA+ + G +    E F  M  R   P+   
Sbjct: 453 RGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 434 FATMIQAYNALGMTEAAQNLENKMI 458
           + ++IQ +   G    A+ L ++MI
Sbjct: 513 YHSIIQGFCMHGGLVKAKELVSEMI 537



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 154/358 (43%), Gaps = 38/358 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M S+G+     V+  L+ AY + G++D+A     +M+      PDV TYS +I + 
Sbjct: 427 LFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQ-QGVSPDVVTYSTVISAF 485

Query: 196 TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           ++  R  D +EK   +M   GI+ +   Y++II G+       + +   S M+  G   P
Sbjct: 486 SRMGRLTDAMEK-FNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI   NS+I++    G +      ++    +G + D+ T   L   Y   G  DK   ++
Sbjct: 545 DIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKIL 604

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M+       +VTY+ +++ + K G I      F++M+ +G+KPN++TY  +++   +A
Sbjct: 605 DAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 375 GLIMKVDS-----------------------------------ILRQVENSDVILDTPFF 399
           G  +                                       + +++   +V       
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +I+A  +    E+  ELF T+     +P+  T+  MI      G  E A N+ + M
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSM 782



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 156/388 (40%), Gaps = 38/388 (9%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +Q  +    T+  ++  L K +  ++A L+   M ++G +P    Y  ++  Y   G L 
Sbjct: 293 RQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLK 352

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA      MKS     P++   +  + S  K  R     +I   M+  G +   V+Y T+
Sbjct: 353 EAAKMFRKMKS-RGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTL 411

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + GY     F +M   F++M +S G   D    N +I AY   G ++     + E    G
Sbjct: 412 LHGYASEGWFADMIGLFNSM-KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 287 VKADIQTLNILTKSYGRAG-MYDKMRS--------------------------------- 312
           V  D+ T + +  ++ R G + D M                                   
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 313 --VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V + + K    P +V +N VI +  K G +    + F  +   G +P+ IT+ SL+  
Sbjct: 531 ELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y   G + K   IL  +E   V  D   ++ ++  Y + G +     LF  M+ +   P+
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMI 458
            +T+  M+      G T AA+   ++MI
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMI 678



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 128/301 (42%), Gaps = 16/301 (5%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++  L K  +   A  +F+++   G +P V  +T+L+  Y   G +D+AF  ++ M+
Sbjct: 549 FNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAME 608

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            V   + D+ TYS L+    K  R +    +  EM   G++ + VTY  ++ G  +A + 
Sbjct: 609 VVG-VETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRT 667

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYG-------NSGNIEKMEKWYNEFNLMGVKA 289
                 F  M+ESG            +S YG        +   ++    + +   M VK 
Sbjct: 668 VAARKKFHEMIESG--------TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF 719

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            I  LN +  +  +    ++ + +   +      P   TY ++I    K G +E     F
Sbjct: 720 SITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMF 779

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             M+  G+ P S     ++    + G I K  + L +V+   ++L+    + ++S + + 
Sbjct: 780 SSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRK 839

Query: 410 G 410
           G
Sbjct: 840 G 840


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 176/368 (47%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  D  I    +  +W+ A+ +   + +     +R  T+  L+   G      +A 
Sbjct: 175 KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSR-STYNNLINACGSSGNWREAL 233

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I  
Sbjct: 234 EVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYC 292

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +K  +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G 
Sbjct: 293 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGL 351

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + 
Sbjct: 352 KPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKE 411

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V   M+K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S
Sbjct: 412 VFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACS 471

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++   + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++
Sbjct: 472 RSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSV 531

Query: 433 TFATMIQA 440
           TF  +I  
Sbjct: 532 TFTILISG 539



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 183/394 (46%), Gaps = 11/394 (2%)

Query: 67  KVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126
           +V + +++  W   V E +D  +   +W+   ++ G+L       AR + F  L+  L +
Sbjct: 66  RVENDRFQKDWS--VSEVVDRLMALNRWE---EVDGVLNSWVGRFAR-KNFPVLIRELSR 119

Query: 127 CKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
               E    +F+ M +        D+Y  ++  + +   +D+A     +M+  S CKPD 
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDA 178

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY  LI +  +  ++     ++ +M    I  S  TYN +I+  G +  + E       
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKK 238

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M ++G   PD+ T N ++SAY +     K   ++       V+ D  T NI+     + G
Sbjct: 239 MTDNG-VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 306 MYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              +   + + M+++     P VVT+  ++  +   G IE     F+ M   G+KPN ++
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVS 357

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L+ AY+  G+     S+L  ++ + +I D   + C++++YG++    K  E+FL M+
Sbjct: 358 YNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMR 417

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +    P+ +T+  +I AY + G    A  +  +M
Sbjct: 418 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 159/351 (45%), Gaps = 56/351 (15%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           AL +F  +R+++   A C+    TFT +M +     + E    +FE M+++GLKP++  Y
Sbjct: 302 ALDLFNSMREKR---AECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSY 358

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+   A S + D+K  +   PDV                           
Sbjct: 359 NALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV--------------------------- 390

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                   V+Y  +++ YG++++  + +  F  M+      P++ T N++I AYG++G +
Sbjct: 391 --------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  + + +    G+K ++ ++  L  +  R+     + +V+   Q R        YN  
Sbjct: 442 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I ++  A  +EK    ++ M+ + +K +S+T+  L+S   +     +  S L+++E+  +
Sbjct: 502 IGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            L             + G V +   +F  MK   C PD I + +M+ AYNA
Sbjct: 562 PLT------------KEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNA 600



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     +++    + E      K D +T + L  ++GRAG +    ++M
Sbjct: 144 DIY--NMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLM 201

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+  +  E  KKM   G+ P+ +T+  ++SAY   
Sbjct: 202 DDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSG 261

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  S    ++ + V  DT  FN II    + G   +  +LF +M+E+   C PD +
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF +++  Y+  G  E  + +   M+A
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVA 348



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/410 (20%), Positives = 154/410 (37%), Gaps = 96/410 (23%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL + G ++Q         ++T L+   G+ +QP +A  +F +M  +  KP+V  Y AL+
Sbjct: 374 ALSVLGDIKQNG-IIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +G L EA      M+     KP+V +   L+ +C++  +   ++ +L+     GI
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQ-DGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGI 491

Query: 217 -----------------------------------ECSAVTYNTIIDGYGKAKKF----- 236
                                              +  +VT+  +I G  +  K+     
Sbjct: 492 NLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAIS 551

Query: 237 ------------------EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
                              E ES F+ M +  GC PD+    SM+ AY  S    K  + 
Sbjct: 552 YLKEMEDLSIPLTKEGQVTEAESIFNQM-KMAGCEPDVIAYTSMLHAYNASEKWGKACEL 610

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFP------- 324
           + E    G++ D    + L +++ + G    +  +MD M+++        FF        
Sbjct: 611 FLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNT 670

Query: 325 ---------------------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
                                ++   N ++  FGK+G +E M + F K+   G+  N  T
Sbjct: 671 LQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKT 730

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           Y  L+      G   K   +L  +  + +      +  IIS   ++  +E
Sbjct: 731 YAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 780


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 172/365 (47%), Gaps = 3/365 (0%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           E   +  W  AL++F  +++QQW +     +T ++ ++G+    E+ S +FE M  + +K
Sbjct: 55  EFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVK 114

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIE 205
            +V  +TAL++AYG++G  + +   +  MK     +P++ TY+ ++ +C+K    ++ + 
Sbjct: 115 WNVYAFTALINAYGRNGQYEASLHLLARMKK-EQVEPNLITYNTVLNACSKGGLDWEGLL 173

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            + A+M + GI+   +TYNT++         E+    F  M ESG    D  T  S++  
Sbjct: 174 NLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESG-VVADAVTYKSLVDT 232

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +  S  + ++E+   E    G   DI   N L ++Y  AG       V   MQ+    P 
Sbjct: 233 FAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPD 292

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TY+ ++  +G  G  E++   F  MK     P   TY SL+  + + G   +  ++  
Sbjct: 293 VETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFH 352

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + +S V  D   ++ ++S  G+ G   +  ++   M      P     A +I +Y  + 
Sbjct: 353 DMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMA 412

Query: 446 MTEAA 450
           M + A
Sbjct: 413 MYKDA 417



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 160/372 (43%), Gaps = 7/372 (1%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  L +F  +R +   Q    T+  L+         EQA+++F+ M   G+      Y 
Sbjct: 169 WEGLLNLFAQMRHEG-IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYK 227

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           +LV  +  S  L      + +M+   +  PD+  Y+ LI++            +  +M  
Sbjct: 228 SLVDTFAGSNQLGRVEELLREMEDEGN-PPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR 286

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G      TY+T++  YG    FE++ S FS M +     P + T NS+I  +G  G  +
Sbjct: 287 GGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLS-TPPTVATYNSLIQVFGEGGYFQ 345

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           +    +++    GVK D  T + L    GR G+  +   +   M      P++     +I
Sbjct: 346 ESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLI 405

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
            ++GK    +     + +++  G+ P    Y +L+  Y+K GL ++  S L  +  +   
Sbjct: 406 SSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQ 465

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQN 452
                 N ++ AY + G  ++  E F  ++++     D  T  T++  Y  +G+ E A+ 
Sbjct: 466 APVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAK- 524

Query: 453 LENKMIAMKENS 464
              + + +KE S
Sbjct: 525 --EEFVIIKETS 534



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 7/351 (1%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           A   T+  L+       Q  +   L   M  +G  P +  Y +L+ AY  +G +  A   
Sbjct: 221 ADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGV 280

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
              M+    C PDV TYS L++       F+ +  + ++M  L    +  TYN++I  +G
Sbjct: 281 FKQMQR-GGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFG 339

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +   F+E  + F  MV+SG   PD  T ++++S  G  G   +  K +           +
Sbjct: 340 EGGYFQESINLFHDMVDSG-VKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSL 398

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +    L  SYG+  MY         +++    P V  Y+ +I+ + K G   +       
Sbjct: 399 EASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYA 458

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           M   G +    +  S++ AYSK GL    ++  S L+Q E S+V  D      ++  Y  
Sbjct: 459 MNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEV--DERTHETLLGVYCD 516

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G +E+  E F+ +KE   VP    +  ++         + A  L ++MIA
Sbjct: 517 MGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLLDEMIA 567


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 172/369 (46%), Gaps = 12/369 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +DEA + KK          L  ++   A   T++ L+   GK K+  +A L+ E M S G
Sbjct: 287 VDEAFELKK----------LMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKG 336

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LKP    YTAL+  + + G   EAF    +M +    K +++TY+ L+K   KF   +  
Sbjct: 337 LKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLA-RGVKLNLFTYNALVKGVCKFGDMEKA 395

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           + +L EM  +GI+    TYN +I+GY K +    ++   S M +S    P  +T   +I+
Sbjct: 396 DALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSN-LVPTAYTCGMIIN 454

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G+IE   + +     +GVK +      L K + + G + +   ++  M K+   P
Sbjct: 455 GLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQP 514

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V+ YN VI    K+  +E+ ++Y  +M  RG+KPN  TY +L+  Y K+G +   D   
Sbjct: 515 DVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYF 574

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           +++    +  +      +I  Y + G   +   +F  M  R   PD  T++ +I      
Sbjct: 575 KEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRN 634

Query: 445 GMTEAAQNL 453
           G  + A  L
Sbjct: 635 GKLQGAMEL 643



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 170/406 (41%), Gaps = 71/406 (17%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +T  M++ G C+    E AS +FE+M+S G+KP+  +YT L+  + Q G   EA   + 
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILK 505

Query: 174 --DMKSVS--------------------------------DCKPDVYTYSILIKSCTKFH 199
             D K V                                   KP+VYTY  LI    K  
Sbjct: 506 VMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSG 565

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              + ++   EM   GI  + V    +IDGY K     E  S F  M+     HPD+ T 
Sbjct: 566 EMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCML-GRSVHPDVRTY 624

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           +++I     +G ++   +  +EF   G+  D+ T N +   + + G   K   + ++M +
Sbjct: 625 SALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQ 684

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           +   P ++TYN +I    KAG IE+  E F  +  +G+  N++TY +++  Y K+G + K
Sbjct: 685 KGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSK 744

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL------------------- 420
              +  ++    V  D+  ++ +I    + G+ EK   LFL                   
Sbjct: 745 AFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDG 804

Query: 421 ---------------TMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
                           M ++H  PD++T+  +I  +   G  + A+
Sbjct: 805 FCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAE 850



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 9/332 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK---PDVYT 187
           E   LLFE M   G  PS+  Y  ++    ++G +DEAF    ++K + D K    DV+T
Sbjct: 254 EGKRLLFE-MEEKGCSPSLVTYNVVIGGLCRAGEVDEAF----ELKKLMDKKGLVADVFT 308

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           YSILI    K  R    + +L EM   G++   V Y  +IDG+ +     E       M+
Sbjct: 309 YSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEML 368

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            + G   ++FT N+++      G++EK +   NE  ++G+K D QT N + + Y +    
Sbjct: 369 -ARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNT 427

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +++ ++  M+K    PT  T  ++I    + G IE     F+ M   G+KPN++ Y +L
Sbjct: 428 SRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTL 487

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  + + G   +   IL+ ++   V  D   +N +I    ++  +E+  +  + M ER  
Sbjct: 488 IKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            P+  T+  +I  Y   G  + A     +M+ 
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLG 579



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 152/320 (47%), Gaps = 7/320 (2%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+    +A+ +F  ML   + P V  Y+AL+    ++G L  A   +++        
Sbjct: 595 GYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLE-KGLV 653

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV+TY+ +I    K        ++   M   GI  + +TYN +I+G  KA + E     
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAREL 713

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  +   G  H  + T  ++I  Y  SGN+ K  + ++E  L GV  D    + L     
Sbjct: 714 FDGIPGKGLAHNAV-TYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCR 772

Query: 303 RAGMYDKMRSV-MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           + G  +K  S+ ++ +QK F   +  + N +++ F K+G + +  +  + M  + +KP+ 
Sbjct: 773 KEGNTEKALSLFLESVQKGF--ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDH 830

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  L+  + K G + + +     ++  +++ +   +  ++S Y  AG   +M  LF  
Sbjct: 831 VTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDE 890

Query: 422 MKERHCVPDNITFATMIQAY 441
           M  +   PD +T++ MI A+
Sbjct: 891 MIAKDIEPDGVTWSVMIDAH 910



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 3/297 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ L+  L +  + + A  L    L  GL P V  Y +++S + + G + +AF  +++
Sbjct: 622 RTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ-LHE 680

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                   P++ TY+ LI    K    +   ++   +   G+  +AVTY TIIDGY K+ 
Sbjct: 681 YMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSG 740

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              +    F  M   G   PD F  +++I      GN EK    + E    G  A   +L
Sbjct: 741 NLSKAFRLFDEMTLKG-VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSL 798

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   + ++G   +   +++ M  +   P  VTY I+I+   K G +++ E++F  M+ 
Sbjct: 799 NALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           R + PN++TY +L+S Y+ AG   ++ ++  ++   D+  D   ++ +I A+ + GD
Sbjct: 859 RNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGD 915



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 152/348 (43%), Gaps = 13/348 (3%)

Query: 102  GLLRQQQWYQARCQ--------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
            G+ +  Q ++  CQ        T+  L+  L K  + E+A  LF+ +   GL  +   Y 
Sbjct: 671  GIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYA 730

Query: 154  ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
             ++  Y +SG L +AF   ++M ++    PD + YS LI  C K    +    +  E   
Sbjct: 731  TIIDGYCKSGNLSKAFRLFDEM-TLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQ 789

Query: 214  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             G   S  + N ++DG+ K+ K  E       MV+     PD  T   +I  +  +G ++
Sbjct: 790  KGF-ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKH-VKPDHVTYTILIDYHCKTGFLK 847

Query: 274  KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
            + E+++ +     +  +  T   L   Y  AG   +M ++ D M  +   P  VT++++I
Sbjct: 848  EAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMI 907

Query: 334  ETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
            +   K G H++ ++     +K  G    ++ +  L+    +   + +V  +L ++E   +
Sbjct: 908  DAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHV-LIDPLCRKEHVSEVLKVLEKIEEQGL 966

Query: 393  ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             L     + ++  + +AG ++    +  +M     VPD+     +I  
Sbjct: 967  NLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINV 1014



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 137/310 (44%), Gaps = 2/310 (0%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           V+  L+  Y + GL DEA S     K  +     +   + L+    K ++ +L  +    
Sbjct: 168 VFELLIDGYKKKGLFDEAVSFFLGAKR-NGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M    +     TY  +I+ + +A   +E +     M E  GC P + T N +I     +G
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEM-EEKGCSPSLVTYNVVIGGLCRAG 285

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++  +     +  G+ AD+ T +IL   +G+     + + +++ M  +   P  V Y 
Sbjct: 286 EVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYT 345

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+ F + G   +     ++M  RG+K N  TY +LV    K G + K D++L ++   
Sbjct: 346 ALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMV 405

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  DT  +N +I  Y +  +  ++ +L   MK+ + VP   T   +I      G  E A
Sbjct: 406 GIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDA 465

Query: 451 QNLENKMIAM 460
             +   M+++
Sbjct: 466 SRVFEIMVSL 475



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 134/333 (40%), Gaps = 42/333 (12%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G    +  ++ L      S L   A S +N M  +S         S LIKSC +F   ++
Sbjct: 96  GFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDS-LIKSCKEFDLNNV 154

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF-------------------- 243
                +  +  G     V +  +IDGY K   F+E  S F                    
Sbjct: 155 NGNENSNNNDRG-----VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLS 209

Query: 244 ---------------SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                          + M+E+   H D++T   +I+A+  +GN ++ ++   E    G  
Sbjct: 210 DLLKANKLELFWRFYNGMLEANVLH-DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCS 268

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
             + T N++     RAG  D+   +   M K+     V TY+I+I+ FGK     + +  
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M  +G+KP  + Y +L+  + + G   +   +  ++    V L+   +N ++    +
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK 388

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            GD+EK   L   M      PD  T+  MI+ Y
Sbjct: 389 FGDMEKADALLNEMIMVGIKPDTQTYNNMIEGY 421



 Score = 38.1 bits (87), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 58/131 (44%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V + ++I+ + K G  ++   +F   K  G     +    L+S   KA  +         
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +  ++V+ D   +  +I+A+ +AG+ ++   L   M+E+ C P  +T+  +I      G 
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286

Query: 447 TEAAQNLENKM 457
            + A  L+  M
Sbjct: 287 VDEAFELKKLM 297


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 8/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++ TKLM  L +  +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ 
Sbjct: 343 RSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISK 402

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  +  KPD   ++ +I + ++    D   KI  +M   G + +A T+NT+I GYGK  
Sbjct: 403 VEK-NGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 461

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K EE       M+      P+  T N ++ A+ N   IE+      +    GVK D+ T 
Sbjct: 462 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 521

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L K+Y R G      +  D +  R       P V T   ++  + + G +E+   +F 
Sbjct: 522 NTLAKAYARIG---STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 578

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +MK  G+ PN   + SL+  +     +  V  ++  +E   V  D   F+ +++A+   G
Sbjct: 579 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 638

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           D+++  E++  M E    PD   F+ + + Y   G  E A+ + N+M
Sbjct: 639 DMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 685



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 157/344 (45%), Gaps = 15/344 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   ++ M      +P+  T +I
Sbjct: 429 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 488

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++     + +    I+ +M   G++   VT+NT+   Y +       E      +   
Sbjct: 489 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 548

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 549 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 608

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+D M++    P VVT++ ++  +   G +++ EE +  M   G+ P+   +  L   
Sbjct: 609 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 668

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 427
           Y++AG   K + IL Q+    V  +   +  IIS +  AG+++K  +++  M    C   
Sbjct: 669 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 724

Query: 428 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
              P+  T+ T+I  +        A+ L      +K+  GK ++
Sbjct: 725 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 762



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 156/341 (45%), Gaps = 8/341 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++  ++ + +  Q   +T   L+      ++ E+A  +   M S G+KP V  +  L  A
Sbjct: 468 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 527

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G    A   I      +  KP+V T   ++    +  + +   +    M  LG+  
Sbjct: 528 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 587

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +   +N++I G+      + +      M E  G  PD+ T +++++A+ + G++++ E+ 
Sbjct: 588 NLFVFNSLIKGFLNINDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 646

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +    G+  DI   +IL K Y RAG  +K   +++ M+K    P VV Y  +I  +  
Sbjct: 647 YTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCS 706

Query: 339 AGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           AG ++K  + +KKM    G+ PN  TY +L+  + +A    K + +L+ +E  +V+    
Sbjct: 707 AGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK 766

Query: 398 FFNCIISAYGQAG-----DVEKMGELFLTMKERHCVPDNIT 433
               I   +   G     D   +G  F T  + + +P+NI 
Sbjct: 767 TMQLIADGWKSIGVSNSNDANTLGSSFSTSSKLN-IPNNIA 806



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)

Query: 242 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  + T   L  +
Sbjct: 327 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 386

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R   +  + S++  ++K    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 387 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 446

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 419
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 447 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 506

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             M+     PD +TF T+ +AY  +G T  A+++
Sbjct: 507 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 540



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  ++    F  +   G KP+ ITY +LV+A ++      + S++ +VE + +  DT  F
Sbjct: 356 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 415

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           N II+A  ++G++++  ++F  MKE  C P   TF T+I+ Y  +G  E +  L + M+
Sbjct: 416 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 474


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 8/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++ TKLM  L +  +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ 
Sbjct: 320 RSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISK 379

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  +  KPD   ++ +I + ++    D   KI  +M   G + +A T+NT+I GYGK  
Sbjct: 380 VEK-NGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K EE       M+      P+  T N ++ A+ N   IE+      +    GVK D+ T 
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 498

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L K+Y R G      +  D +  R       P V T   ++  + + G +E+   +F 
Sbjct: 499 NTLAKAYARIG---STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 555

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +MK  G+ PN   + SL+  +     +  V  ++  +E   V  D   F+ +++A+   G
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 615

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           D+++  E++  M E    PD   F+ + + Y   G  E A+ + N+M
Sbjct: 616 DMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 157/344 (45%), Gaps = 15/344 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   ++ M      +P+  T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++     + +    I+ +M   G++   VT+NT+   Y +       E      +   
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+D M++    P VVT++ ++  +   G +++ EE +  M   G+ P+   +  L   
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 427
           Y++AG   K + IL Q+    V  +   +  IIS +  AG+++K  +++  M    C   
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 701

Query: 428 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
              P+  T+ T+I  +        A+ L      +K+  GK ++
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 739



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 156/341 (45%), Gaps = 8/341 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++  ++ + +  Q   +T   L+      ++ E+A  +   M S G+KP V  +  L  A
Sbjct: 445 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 504

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G    A   I      +  KP+V T   ++    +  + +   +    M  LG+  
Sbjct: 505 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +   +N++I G+      + +      M E  G  PD+ T +++++A+ + G++++ E+ 
Sbjct: 565 NLFVFNSLIKGFLNINDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +    G+  DI   +IL K Y RAG  +K   +++ M+K    P VV Y  +I  +  
Sbjct: 624 YTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCS 683

Query: 339 AGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           AG ++K  + +KKM    G+ PN  TY +L+  + +A    K + +L+ +E  +V+    
Sbjct: 684 AGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK 743

Query: 398 FFNCIISAYGQAG-----DVEKMGELFLTMKERHCVPDNIT 433
               I   +   G     D   +G  F T  + + +P+NI 
Sbjct: 744 TMQLIADGWKSIGVSNSNDANTLGSSFSTSSKLN-IPNNIA 783



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)

Query: 242 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  + T   L  +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 363

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R   +  + S++  ++K    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 364 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 419
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             M+     PD +TF T+ +AY  +G T  A+++
Sbjct: 484 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 517



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  ++    F  +   G KP+ ITY +LV+A ++      + S++ +VE + +  DT  F
Sbjct: 333 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 392

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           N II+A  ++G++++  ++F  MKE  C P   TF T+I+ Y  +G  E +  L + M+
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 182/341 (53%), Gaps = 4/341 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +  + A++++  +++++  +A  +TFT ++ + GK KQP  +  +F  M S G
Sbjct: 54  LDGLLKARCTEKAVEVYQRMKRERC-RANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG 112

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP++  YTALV+A+ + GL ++A     +M+     +PDVY Y+ L+++ ++       
Sbjct: 113 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGA 171

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+A   E+ E+ F  + +  G  P + +   +++
Sbjct: 172 SEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR-GMSPTMKSHMLLLA 230

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+  SGN  + E+   + +  G+  D   LN +  +Y RAG  D M  +   M++R    
Sbjct: 231 AHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERR-GDA 289

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V TYN+ +  +G+AG++ +ME  F  +  RG+  + +T+ + + AY++     +   ++
Sbjct: 290 DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMV 349

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            ++ ++    D      +++A      VE++  +  +M ++
Sbjct: 350 EEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKK 390



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+ D Y  L+ AY  +G L  A   I++M+      P+   Y+  +    K    +   +
Sbjct: 10  PTEDTYALLLRAYCNAGSLHRAEGVISEMRE-HGIPPNATVYNAYLDGLLKARCTEKAVE 68

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +   M       +  T+  +I+ YGKAK+       F+ M +S GC P+I T  ++++A+
Sbjct: 69  VYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAF 127

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G  EK E+ + E    G + D+   N L ++Y RAG+      +   MQ     P  
Sbjct: 128 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDR 187

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            +YNI+++ +G+AG  E  E  F+++K RGM P   ++  L++A++++G   + + ++ Q
Sbjct: 188 ASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQ 247

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           +  S +  DT   N +++AY +AG ++ M  LF  M ER    D  T+   + AY   G
Sbjct: 248 LHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM-ERRGDADVGTYNVAVNAYGRAG 305



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 148/315 (46%), Gaps = 3/315 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K +  E+A  +++ M  +  + + + +T +++ YG++     +    N+MKS+  CKP++
Sbjct: 59  KARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKPNI 117

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     FS 
Sbjct: 118 CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSL 177

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +  GC PD  + N ++ AYG +G  E  E  + E    G+   +++  +L  ++ R+G
Sbjct: 178 M-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSG 236

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +   VM  + K    P     N ++  + +AG ++ ME  F  M+ RG   +  TY 
Sbjct: 237 NATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGTYN 295

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
             V+AY +AG + ++++    V    +  D   +   + AY +  +  +   +   M + 
Sbjct: 296 VAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDA 355

Query: 426 HCVPDNITFATMIQA 440
            C PD  T   ++ A
Sbjct: 356 GCYPDAGTARVLLAA 370



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 152/302 (50%), Gaps = 3/302 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G+ P+  VY A +    ++   ++A      MK    C+ +  T++++I    K  
Sbjct: 38  MREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKR-ERCRANTETFTLMINVYGKAK 96

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +     K+  EM  +G + +  TY  +++ + +    E+ E  F  M ++G   PD++  
Sbjct: 97  QPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAY 155

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+++ AY  +G  +   + ++    MG + D  + NIL  +YGRAG+++   +V + +++
Sbjct: 156 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQ 215

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R   PT+ ++ +++    ++G+  + EE   ++   G+ P++    ++++AY++AG +  
Sbjct: 216 RGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDD 275

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           ++ +   +E      D   +N  ++AYG+AG V +M   F  +  R    D +T+   + 
Sbjct: 276 MERLFAAMERRGDA-DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMG 334

Query: 440 AY 441
           AY
Sbjct: 335 AY 336



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 1/275 (0%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           + C P   TY++L+++          E +++EM   GI  +A  YN  +DG  KA+  E+
Sbjct: 6   AQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEK 65

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               +  M     C  +  T   MI+ YG +       K +NE   +G K +I T   L 
Sbjct: 66  AVEVYQRMKRER-CRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 124

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            ++ R G+ +K   V + MQ+    P V  YN ++E + +AG  +   E F  M+H G +
Sbjct: 125 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 184

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  +Y  LV AY +AGL    +++  +++   +         +++A+ ++G+  +  E+
Sbjct: 185 PDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEV 244

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              + +    PD      M+ AY   G  +  + L
Sbjct: 245 MAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERL 279



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT  TY +++  +  AG + + E    +M+  G+ PN+  Y + +    KA    K   +
Sbjct: 10  PTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEV 69

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            ++++      +T  F  +I+ YG+A       ++F  MK   C P+  T+  ++ A+  
Sbjct: 70  YQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAR 129

Query: 444 LGMTEAAQNLENKM 457
            G+ E A+ +  +M
Sbjct: 130 EGLCEKAEEVFEEM 143


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 176/368 (47%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  D  I    +  +W+ A+ +   + +     +R  T+  L+   G      +A 
Sbjct: 175 KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSR-STYNNLINACGSSGNWREAL 233

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I  
Sbjct: 234 EVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYC 292

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +K  +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G 
Sbjct: 293 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGL 351

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + 
Sbjct: 352 KPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKE 411

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V   M+K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S
Sbjct: 412 VFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACS 471

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++   + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++
Sbjct: 472 RSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSV 531

Query: 433 TFATMIQA 440
           TF  +I  
Sbjct: 532 TFTILISG 539



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 183/394 (46%), Gaps = 11/394 (2%)

Query: 67  KVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126
           +V + +++  W   V E +D  +   +W+   ++ G+L       AR + F  L+  L +
Sbjct: 66  RVENDRFQKDWS--VSEVVDRLMALNRWE---EVDGVLNSWVGRFAR-KNFPVLIRELSR 119

Query: 127 CKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
               E    +F+ M +        D+Y  ++  + +   +D+A     +M+  S CKPD 
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDA 178

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY  LI +  +  ++     ++ +M    I  S  TYN +I+  G +  + E       
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKK 238

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M ++G   PD+ T N ++SAY +     K   ++       V+ D  T NI+     + G
Sbjct: 239 MTDNG-VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 306 MYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              +   + + M+++     P VVT+  ++  +   G IE     F+ M   G+KPN ++
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVS 357

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L+ AY+  G+     S+L  ++ + +I D   + C++++YG++    K  E+FL M+
Sbjct: 358 YNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMR 417

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +    P+ +T+  +I AY + G    A  +  +M
Sbjct: 418 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 165/351 (47%), Gaps = 44/351 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           AL +F  +R+++   A C+    TFT +M +     + E    +FE M+++GLKP++  Y
Sbjct: 302 ALDLFNSMREKR---AECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSY 358

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+   A S + D+K  +   PDV                           
Sbjct: 359 NALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV--------------------------- 390

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                   V+Y  +++ YG++++  + +  F  M+      P++ T N++I AYG++G +
Sbjct: 391 --------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  + + +    G+K ++ ++  L  +  R+     + +V+   Q R        YN  
Sbjct: 442 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I ++  A  +EK    ++ M+ + +K +S+T+  L+S   +     +  S L+++E+  +
Sbjct: 502 IGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            L    ++ ++ AY + G V +   +F  MK   C PD I + +M+ AYNA
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNA 612



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+  N MI  +     +++    + E      K D +T + L  ++GRAG +    ++M
Sbjct: 144 DIY--NMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLM 201

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M +    P+  TYN +I   G +G+  +  E  KKM   G+ P+ +T+  ++SAY   
Sbjct: 202 DDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSG 261

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  S    ++ + V  DT  FN II    + G   +  +LF +M+E+   C PD +
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF +++  Y+  G  E  + +   M+A
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVA 348



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 151/379 (39%), Gaps = 49/379 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A++IF  + +Q   +    +   L+    + K+      +     S G+  +   Y + +
Sbjct: 444 AVEIFRQM-EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI 502

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +Y  +  L++A +    M+     K D  T++ILI    +  ++      L EM  L I
Sbjct: 503 GSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +   Y++++  Y K  +  E ES F+ M +  GC PD+    SM+ AY  S    K  
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTSMLHAYNASEKWGKAC 620

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFP----- 324
           +   E    G++ D    + L +++ + G    +  +MD M+++        FF      
Sbjct: 621 ELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSAC 680

Query: 325 -----------------------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                                  ++   N ++  FGK+G +E M + F K+   G+  N 
Sbjct: 681 NTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINL 740

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE-------K 414
            TY  L+      G   K   +L  +  + +      +  IIS   ++  +E       K
Sbjct: 741 KTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQK 800

Query: 415 MGELFLTMKERHCVPDNIT 433
           +GE    M+E   + D++T
Sbjct: 801 LGE----MREECKINDSVT 815


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 6/338 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q      +  T   ++  LG   + E+A  +FE +   GL P    Y AL+  Y ++G L
Sbjct: 283 QGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSL 342

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            +A S +++M+  S   PD +TYS+LI +     R++    +L EM   G+  ++  ++ 
Sbjct: 343 KDAESIVSEMER-SGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSR 401

Query: 226 IIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           I+  Y    K+++   SF  + E  + G  PD    N MI  +G    ++     ++   
Sbjct: 402 ILASYRDRGKWQK---SFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR 458

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
           + GV+ D  T N L   + ++G ++K   + + MQ+    P   TYNI+I +FG+    E
Sbjct: 459 MEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 518

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
            ++    KM+ +G+  N +TY +LV  Y ++G        L  +++  +   +  +N +I
Sbjct: 519 DVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALI 578

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +AY Q G  E+    F  M+     P  +   ++I A+
Sbjct: 579 NAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAF 616



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 11/344 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+ A  ++  L++A + ++ M+
Sbjct: 157 YSILIHALGRSEKLYEAFLLSQ---RQTLTPLT--YNALIGACARNDDLEKALNLMSRMR 211

Query: 177 SVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              D  P D   YS +I+S T+ ++ D  +++KI AE+    IE      N II G+ K+
Sbjct: 212 R--DGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKS 269

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                   SF AMV+  G  P   TL ++I+A GN+G  E+ E  + E    G+    + 
Sbjct: 270 GDVNRA-MSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRA 328

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L K Y + G      S++  M++  F P   TY+++I+ +  AG  E      K+M+
Sbjct: 329 YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEME 388

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++PNS  +  ++++Y   G   K   +LR++ NS V  D  F+N +I  +G+   ++
Sbjct: 389 ASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLD 448

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                F  M+     PD +T+ T+I  +   G    A+ L   M
Sbjct: 449 HALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM 492



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 153/338 (45%), Gaps = 2/338 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q    ++V   K     +A     ++  +GL P      A+++A G +G  +EA +   +
Sbjct: 257 QLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEE 316

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K      P    Y+ L+K   K       E I++EM   G      TY+ +ID Y  A 
Sbjct: 317 LKE-GGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAG 375

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++E        M E+ G  P+ +  + ++++Y + G  +K  +   E    GV  D    
Sbjct: 376 RWESARIVLKEM-EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFY 434

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N++  ++G+    D   +  D M+     P  VT+N +I+   K+GH  K EE F+ M+ 
Sbjct: 435 NVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQE 494

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P + TY  +++++ +      V ++L ++++  ++ +   +  ++  YGQ+G  + 
Sbjct: 495 SGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKD 554

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             E    MK     P +  +  +I AY   G++E A N
Sbjct: 555 AIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAIN 592



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 159/326 (48%), Gaps = 2/326 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+       + E A ++ + M + G++P+  V++ ++++Y   G   ++F  + +
Sbjct: 362 HTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLRE 421

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++ S   PD + Y+++I +  K +  D        M   G++  AVT+NT+ID + K+ 
Sbjct: 422 MRN-SGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSG 480

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              + E  F AM ESG C P   T N MI+++G     E ++    +    G+ A++ T 
Sbjct: 481 HHNKAEELFEAMQESG-CSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTY 539

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   YG++G +      ++ M+     P+   YN +I  + + G  E+    F+ M+ 
Sbjct: 540 TTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRA 599

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+KP+ +   SL++A+ +     +  S+L+ ++ +D+  D   +  ++ A  +    +K
Sbjct: 600 DGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDK 659

Query: 415 MGELFLTMKERHCVPDNITFATMIQA 440
           +  ++  M    C PD    A +  A
Sbjct: 660 VPAVYEEMTLSGCTPDRKARAMLRSA 685



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q++W+    + G + Q Q   A   T+T L+ + G+  + + A    EVM S GLKPS 
Sbjct: 513 EQERWEDVKTLLGKM-QSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSS 571

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL++AY Q GL ++A +    M++    KP V   + LI +  +  R      +L 
Sbjct: 572 TMYNALINAYAQRGLSEQAINAFRVMRA-DGLKPSVLVLNSLINAFGEDRRDAEAFSVLQ 630

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            M    ++   VTY T++    + +KF+++ + +  M  S GC PD
Sbjct: 631 YMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLS-GCTPD 675



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/273 (18%), Positives = 115/273 (42%), Gaps = 22/273 (8%)

Query: 203 LIEKILAEMSYLGIECSAVT--------------YNTIIDGYGKAKKFEEMESSFSAMVE 248
           L++ + ++ S +G   S VT              Y+ +I   G+++K       + A + 
Sbjct: 123 LLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKL------YEAFLL 176

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S        T N++I A   + ++EK     +     G  +D    + + +S  R    D
Sbjct: 177 SQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSD 236

Query: 309 K--MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
              ++ +   ++           N +I  F K+G + +   +   ++  G+ P + T  +
Sbjct: 237 SSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVA 296

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           +++A   AG   + ++I  +++   ++  T  +N ++  Y + G ++    +   M+   
Sbjct: 297 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 356

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             PD  T++ +I AY   G  E+A+ +  +M A
Sbjct: 357 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEA 389


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 195/416 (46%), Gaps = 19/416 (4%)

Query: 38  IQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLA 97
           ++ELG + ++ K          A++  E  V  +  KN   K     +    +  K +LA
Sbjct: 160 LRELGNRGDSAK----------AVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELA 209

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
             +F    ++  Y      F+ L+   G+     +A  +F+ M S+GL P++  Y A++ 
Sbjct: 210 KAVFDTALKEG-YGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVID 268

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
           A G+ G+  +    I D    +  +PD  T++ L+  C++   ++   ++ + M   GI+
Sbjct: 269 ACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGID 328

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKM 275
               TYNT++D   K     +M+ +F  M E  +    P++ T ++MI  Y   G ++  
Sbjct: 329 QDIFTYNTLLDAVCKGG---QMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDA 385

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
              +NE   +GV  D  + N L   Y + G +++   V   M+       VVTYN ++  
Sbjct: 386 LNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAG 445

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +GK    +++   F++MK   + PN +TY +L+  YSK GL  +   + R+ + + +  D
Sbjct: 446 YGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKAD 505

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              ++ +I A  + G VE    L   M +    P+ +T+ ++I A+   G + +AQ
Sbjct: 506 VVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAF---GRSASAQ 558


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 168/349 (48%), Gaps = 6/349 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV LG+ +       L E M + GL+P++  YT  +   G++G +D+A+  +  
Sbjct: 228 KTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKT 287

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+    C PDV TY++LI +     + D  +++  +M     +   VTY T++  +G   
Sbjct: 288 MED-EGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYG 346

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             E ++  +S M E+ G  PD+ T   ++ A   SG +++     +   + G+  ++ T 
Sbjct: 347 DLETVKRFWSEM-EADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTY 405

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L          D+   + + M+     PT  +Y + I+ +GK G  EK  + F+KMK 
Sbjct: 406 NTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKK 465

Query: 355 RGMKPNSITYCSLVSAYSKA--GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           RG+ P SI  C+  S YS A  G I +   I   + N  +  D+  +N ++  Y +AG +
Sbjct: 466 RGIMP-SIAACN-ASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQI 523

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +K  +L   M    C PD I   ++I      G  + A  +  ++  +K
Sbjct: 524 DKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLK 572



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM   G     E     +  M +DG  P V  YT LV A  +SG +D+AF  ++ M
Sbjct: 334 TYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVM 393

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V    P+++TY+ LI       R D   ++   M  LG+  +A +Y   ID YGK   
Sbjct: 394 R-VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGD 452

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+   +F  M +  G  P I   N+ + +    G I + +  +N+ +  G+  D  T N
Sbjct: 453 PEKALDTFEKM-KKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYN 511

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K Y +AG  DK   ++  M      P ++  N +I+T  KAG +++  + F ++K  
Sbjct: 512 MMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDL 571

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P  +TY  L++   K G ++K   +   ++ S    +T  FN ++    +   V+  
Sbjct: 572 KLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLA 631

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++F  M   +C PD +T+ T+I
Sbjct: 632 LKMFCRMTIMNCSPDVLTYNTII 654



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 2/357 (0%)

Query: 81   VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
            +L  +    KQKK   A K+F    +        +++  LM  L  C   E A  LF  M
Sbjct: 755  ILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEM 814

Query: 141  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
             + G  P++  Y  L+ A+G+S  +DE F   N+M     CKP++ T++I+I +  K + 
Sbjct: 815  KNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLC-RGCKPNIITHNIIISALVKSNS 873

Query: 201  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
             +    +  E+       +  TY  +I G  KA + EE    F  M +   C P+    N
Sbjct: 874  INKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQ-CKPNCAIYN 932

Query: 261  SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
             +I+ +G +GN+      +      G++ D+++  IL +     G  D      + ++  
Sbjct: 933  ILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLT 992

Query: 321  FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
               P  V+YN++I   GK+  +E+    F +MK+RG+ P   TY +L+  +  AG++ + 
Sbjct: 993  GLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQA 1052

Query: 381  DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
              +  +++   +  +   +N +I  + ++G+ ++   +F  M    C P+  TFA +
Sbjct: 1053 GKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 166/349 (47%), Gaps = 5/349 (1%)

Query: 120  LMVMLGKCKQPEQASLLFEVML-SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
            L+ +L K K+   A  LF+    S G  P+ + Y  L+       + + A     +MK+ 
Sbjct: 758  LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN- 816

Query: 179  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            + C P+++TY++L+ +  K  R D + ++  EM   G + + +T+N II    K+    +
Sbjct: 817  AGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINK 876

Query: 239  MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                +  ++ SG   P   T   +I     +G  E+  K + E      K +    NIL 
Sbjct: 877  ALDLYYEII-SGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILI 935

Query: 299  KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              +G+AG  +    +   M K    P + +Y I++E     G ++    YF+++K  G+ 
Sbjct: 936  NGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLD 995

Query: 359  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            P++++Y  +++   K+  + +  S+  +++N  +  +   +N +I  +G AG V++ G++
Sbjct: 996  PDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKM 1055

Query: 419  FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM--IAMKENSG 465
            F  ++     P+  T+  +I+ ++  G  + A ++  KM  +    N+G
Sbjct: 1056 FEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAG 1104



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 150/380 (39%), Gaps = 73/380 (19%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +   Y     T+T L+  L K  + +QA  + +VM   G+ P++  Y  L+S       L
Sbjct: 359 EADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRL 418

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKI-------------- 207
           DEA    N+M+S+    P  Y+Y + I    K        D  EK+              
Sbjct: 419 DEALELFNNMESLG-VAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNA 477

Query: 208 ----LAEMSYL-------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
               LAEM  +             G+   +VTYN ++  Y KA + ++     + M+ S 
Sbjct: 478 SLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEML-SE 536

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC PDI  +NS+I     +G ++  E W                    + +GR       
Sbjct: 537 GCEPDIIVVNSLIDTLYKAGRVD--EAW--------------------QMFGR------- 567

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
                 ++     PTVVTYNI+I   GK G + K  + F  MK  G  PN++T+ +L+  
Sbjct: 568 ------LKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDC 621

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K   +     +  ++   +   D   +N II    + G        +  MK +   PD
Sbjct: 622 LCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK-KFLSPD 680

Query: 431 NITFATMIQAYNALGMTEAA 450
           ++T  T++      G  E A
Sbjct: 681 HVTLYTLLPGVVKDGRVEDA 700



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 36/250 (14%)

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L +M   G   +A +YN +I    +    +E    +  M+ S G  P + T ++++ A G
Sbjct: 180 LGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMI-SEGLKPSMKTYSALMVALG 238

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              +   +     E   +G++ +I T  I  +  GRAG  D    ++  M+     P VV
Sbjct: 239 RRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVV 298

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY ++I+    AG ++K +E + KM+    KP+ +TY +L                    
Sbjct: 299 TYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL-------------------- 338

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
                          +S +G  GD+E +   +  M+     PD +T+  +++A    G  
Sbjct: 339 ---------------MSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKV 383

Query: 448 EAAQNLENKM 457
           + A ++ + M
Sbjct: 384 DQAFDMLDVM 393



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 88/202 (43%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N M+      G +E M   ++      +  +  T   + K+    G   +    +  M
Sbjct: 124 TCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKM 183

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++  F     +YN +I    + G  ++  + +K+M   G+KP+  TY +L+ A  +    
Sbjct: 184 RQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDT 243

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             +  +L ++E   +  +   +   I   G+AG ++    +  TM++  C PD +T+  +
Sbjct: 244 GTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVL 303

Query: 438 IQAYNALGMTEAAQNLENKMIA 459
           I A  A G  + A+ L  KM A
Sbjct: 304 IDALCAAGKLDKAKELYTKMRA 325


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 9/353 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++    K  Q +QA   FE M  + + P+   Y  +V+   ++ L  +A+  + +M
Sbjct: 9   TWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEM 67

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAK 234
           +      PD+ TYS +I    K    D   +IL EM +  GI    VTY +++DG  +  
Sbjct: 68  RDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDG 127

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQT 293
           K +        M +  G  PD FT +++I+ + N+  +++  K Y E       K D+ T
Sbjct: 128 KMDRACEMVREM-KLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVT 186

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L   + ++G  +K   ++  M+ R   P VVTY+ ++    KAG +++  + F++M 
Sbjct: 187 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 246

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G  PN +TY +L+     A  +     ++ ++  +    DT  +N ++  Y + G +E
Sbjct: 247 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIE 306

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMIAMKENSG 465
           +  +LF  M  + C+PD IT+  +++ + NA  + EA   LEN    MK  +G
Sbjct: 307 EAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLEN----MKTAAG 355



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 174/401 (43%), Gaps = 39/401 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ +   A +I   +  +        T+T ++  L +  + ++A  +   M   G++P  
Sbjct: 89  KQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDK 148

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             ++AL++ +  +  +DEA     ++ + S  KPDV TY+ LI    K    +   K+L 
Sbjct: 149 FTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLG 208

Query: 210 EMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------------- 250
            M   G +C  + VTY++++ G  KA   ++    F  M   G                 
Sbjct: 209 VME--GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCA 266

Query: 251 -----------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                             C PD  + N+++  Y   G IE+ ++ + E        D  T
Sbjct: 267 AHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRIT 326

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
              L + +  A   ++ R +++ M+      P VVTY+IV+  + +A    +  E+ ++M
Sbjct: 327 YTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEM 386

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             R + PN++TY SL+    KAG +     +L+ + N  V      FN +I A  + GD+
Sbjct: 387 IARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDM 446

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++  +L + M      P  +T+ T+++ ++  G  E A  L
Sbjct: 447 DEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 487



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 174/381 (45%), Gaps = 12/381 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM--LS 142
           +D   K  + + AL  F  +R+      R    T  +V+ G CK     S  +EV+  + 
Sbjct: 14  IDGFCKANQLKQALACFEKMREFVAPNER----TYNVVVNGLCKA-RLTSKAYEVLKEMR 68

Query: 143 DG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           DG  + P +  Y+ +++ + + G +D A   + +M +     PDV TY+ ++    +  +
Sbjct: 69  DGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGK 128

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D   +++ EM   G+E    T++ +I G+  A+K +E    +  ++ S    PD+ T  
Sbjct: 129 MDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYT 188

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  +  SGN+EK  K            ++ T + L     +AG  D+   +   M  +
Sbjct: 189 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 248

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VVTY  +I     A  ++       +M      P++++Y +L+  Y + G I + 
Sbjct: 249 GCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEA 308

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQ 439
             + +++     + D   + C++  +  A  +E+   L   MK    + PD +T++ ++ 
Sbjct: 309 KQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVA 368

Query: 440 AYN-ALGMTEAAQNLENKMIA 459
            Y+ A    EAA+ ++ +MIA
Sbjct: 369 GYSRAKRFVEAAEFIQ-EMIA 388



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 165/380 (43%), Gaps = 9/380 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K    + A+K+ G++  ++       T++ L+  L K    +QA  LF  M S G
Sbjct: 191 IDGFCKSGNLEKAMKMLGVMEGRKCVP-NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG 249

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+V  YT L+     +  +D A   +++M +   C PD  +Y+ L+    +  R +  
Sbjct: 250 CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC-CPPDTVSYNALLDGYCRLGRIEEA 308

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +++  EM+        +TY  ++ G+  A + EE       M  + G  PD+ T + +++
Sbjct: 309 KQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVA 368

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            Y  +    +  ++  E     V  +  T + L     +AG  D    V+  M  +   P
Sbjct: 369 GYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEP 428

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVD 381
           +V T+N VI    + G +++  +    M   G++P  +TY +L+  +S+ G   +  ++ 
Sbjct: 429 SVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELF 488

Query: 382 SILRQVENSDV----ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            ++R+          ++    F+ +I    +A +++K   +   ++ R C P       +
Sbjct: 489 EVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAI 548

Query: 438 IQAYNALGMTEAAQNLENKM 457
           +      G TE A  L N +
Sbjct: 549 VDGLLRAGRTEEAGKLINSI 568



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 216 IEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +EC  + VT+  IIDG+ KA + ++  + F  M E     P+  T N +++    +    
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVA--PNERTYNVVVNGLCKARLTS 58

Query: 274 KMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNI 331
           K  +   E  +   V  D+ T + +   + + G  D+   ++  M  R    P VVTY  
Sbjct: 59  KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ----V 387
           V++   + G +++  E  ++MK +G++P+  T+ +L++ +  A    KVD  L+     +
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNA---RKVDEALKLYKEIL 175

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            +S    D   +  +I  + ++G++EK  ++   M+ R CVP+ +T+++++      G  
Sbjct: 176 TSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDL 235

Query: 448 EAAQNLENKM 457
           + A +L  +M
Sbjct: 236 DQALDLFRRM 245


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 8/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++ TKLM  L +  +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ 
Sbjct: 320 RSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISK 379

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  +  KPD   ++ +I + ++    D   KI  +M   G + +A T+NT+I GYGK  
Sbjct: 380 VEK-NGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K EE       M+      P+  T N ++ A+ N   IE+      +    GVK D+ T 
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 498

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L K+Y R G      +  D +  R       P V T   ++  + + G +E+   +F 
Sbjct: 499 NTLAKAYARIG---STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 555

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +MK  G+ PN   + SL+  +     +  V  ++  +E   V  D   F+ +++A+   G
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 615

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           D+++  E++  M E    PD   F+ + + Y   G  E A+ + N+M
Sbjct: 616 DMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQM 662



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 156/344 (45%), Gaps = 15/344 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   ++ M      +P+  T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++     + +    I+ +M   G++   VT+NT+   Y +       E      +   
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+D M++    P VVT++ ++  +   G +++ EE +  M   G+ P+   +  L   
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 427
           Y++AG   K   IL Q+    V  +   +  IIS +  AG+++K  +++  M    C   
Sbjct: 646 YARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 701

Query: 428 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
              P+  T+ T+I  +        A+ L      +K+  GK ++
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 739



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 157/341 (46%), Gaps = 8/341 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++  ++ + +  Q   +T   L+      ++ E+A  +   M S G+KP V  +  L  A
Sbjct: 445 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 504

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G    A   I      +  KP+V T   ++    +  + +   +    M  LG+  
Sbjct: 505 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +   +N++I G+      + +      M E  G  PD+ T +++++A+ + G++++ E+ 
Sbjct: 565 NLFVFNSLIKGFLNINDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +    G+  DI   +IL K Y RAG  +K + +++ M+K    P VV Y  +I  +  
Sbjct: 624 YTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCS 683

Query: 339 AGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           AG ++K  + +KKM    G+ PN  TY +L+  + +A    K + +L+ +E  +V+    
Sbjct: 684 AGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK 743

Query: 398 FFNCIISAYGQAG-----DVEKMGELFLTMKERHCVPDNIT 433
               I   +   G     D   +G  F T  + + +P+NI 
Sbjct: 744 TMQLIADGWKSIGVSNSNDANTLGSSFSTSSKLN-IPNNIA 783



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)

Query: 242 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  + T   L  +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 363

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R   +  + S++  ++K    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 364 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 419
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             M+     PD +TF T+ +AY  +G T  A+++
Sbjct: 484 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 517



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  ++    F  +   G KP+ ITY +LV+A ++      + S++ +VE + +  DT  F
Sbjct: 333 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 392

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           N II+A  ++G++++  ++F  MKE  C P   TF T+I+ Y  +G  E +  L + M+
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 176/368 (47%), Gaps = 9/368 (2%)

Query: 79  KPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           KP  E  D  I    +  +W+ A+ +   + +     +R  T+  L+   G      +A 
Sbjct: 43  KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSR-STYNNLINACGSSGNWREAL 101

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + + M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I  
Sbjct: 102 EVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYC 160

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +K  +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G 
Sbjct: 161 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGL 219

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+I + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + 
Sbjct: 220 KPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKE 279

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V   M+K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S
Sbjct: 280 VFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACS 339

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           ++   + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++
Sbjct: 340 RSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSV 399

Query: 433 TFATMIQA 440
           TF  +I  
Sbjct: 400 TFTILISG 407



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D+Y  ++  + +   +D+A     +M+  S CKPD  TY  LI +  +  ++     ++ 
Sbjct: 12  DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 70

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    I  S  TYN +I+  G +  + E       M ++G   PD+ T N ++SAY + 
Sbjct: 71  DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 129

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 327
               K   ++       V+ D  T NI+     + G   +   + + M+++     P VV
Sbjct: 130 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 189

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T+  ++  +   G IE     F+ M   G+KPN ++Y +L+ AY+  G+     S+L  +
Sbjct: 190 TFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI 249

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           + + +I D   + C++++YG++    K  E+FL M++    P+ +T+  +I AY + G  
Sbjct: 250 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 309

Query: 448 EAAQNLENKM 457
             A  +  +M
Sbjct: 310 AEAVEIFRQM 319



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 165/351 (47%), Gaps = 44/351 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           AL +F  +R+++   A C+    TFT +M +     + E    +FE M+++GLKP++  Y
Sbjct: 170 ALDLFNSMREKR---AECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSY 226

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+   A S + D+K  +   PDV                           
Sbjct: 227 NALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV--------------------------- 258

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                   V+Y  +++ YG++++  + +  F  M+      P++ T N++I AYG++G +
Sbjct: 259 --------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFL 309

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  + + +    G+K ++ ++  L  +  R+     + +V+   Q R        YN  
Sbjct: 310 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 369

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I ++  A  +EK    ++ M+ + +K +S+T+  L+S   +     +  S L+++E+  +
Sbjct: 370 IGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 429

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            L    ++ ++ AY + G V +   +F  MK   C PD I + +M+ AYNA
Sbjct: 430 PLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNA 480



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 152/379 (40%), Gaps = 49/379 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A++IF  + +Q   +    +   L+    + K+      +     S G+  +   Y + +
Sbjct: 312 AVEIFRQM-EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAI 370

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +Y  +  L++A +    M+     K D  T++ILI    +  ++      L EM  L I
Sbjct: 371 GSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 429

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +   Y++++  Y K  +  E ES F+ M +  GC PD+    SM+ AY  S    K  
Sbjct: 430 PLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTSMLHAYNASEKWGKAC 488

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-------FFFP----- 324
           + + E    G++ D    + L +++ + G    +  +MD M+++        FF      
Sbjct: 489 ELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSAC 548

Query: 325 -----------------------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                                  ++   N ++  FGK+G +E M + F K+   G+  N 
Sbjct: 549 NTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINL 608

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE-------K 414
            TY  L+      G   K   +L  +  + +      +  IIS   ++  +E       K
Sbjct: 609 KTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQK 668

Query: 415 MGELFLTMKERHCVPDNIT 433
           +GE    M+E   + D++T
Sbjct: 669 LGE----MREECKINDSVT 683


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 164/313 (52%), Gaps = 5/313 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +++V+ GK  +P +A +L+  M      P++  +TAL++A+ + GL  EA    + +
Sbjct: 211 TYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKL 270

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   D KPD Y Y+ L+++ ++        +I   M   G     V++N +I+ YG+A  
Sbjct: 271 QEF-DYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E+ E  F +M +S G  P++ +   ++SAY  +G +E+ E+  +     G K D    N
Sbjct: 330 YEDAEKIFKSM-QSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYN 388

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            L  +YG +G ++ M +++  M K   +   P + TYN +I+ + +AG I K EE F+ +
Sbjct: 389 ALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGL 448

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
               + P++ T+ +L+  Y+K  L  K  SIL+++  S    D      + SA      V
Sbjct: 449 ARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQV 508

Query: 413 EKMGELFLTMKER 425
           E++ +L  +++ R
Sbjct: 509 EQVTQLMESLQGR 521



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 157/361 (43%), Gaps = 40/361 (11%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           V+     +P +  Y  L+ AYG+S  +++A  T N M+    C P+  T+ +LI      
Sbjct: 94  VLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEAL-CVPNEETFGVLINGYRLA 152

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
             F+  E++  +M   G     +  NT +     AK++   E+ F  + E   C P+I T
Sbjct: 153 GSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDL-EKYECEPNIDT 211

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-------DKMR 311
            N MI  YG +G   K E  Y          +I T   L  ++ R G+Y       DK++
Sbjct: 212 YNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQ 271

Query: 312 S----------------------------VMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
                                        +   MQ+   FP  V++NI+I  +G+AG  E
Sbjct: 272 EFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYE 331

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             E+ FK M+  G  PN  +   L+SAY++AG + + + ++  +E      DT  +N +I
Sbjct: 332 DAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALI 391

Query: 404 SAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +AYG +G  E M  L   M     +   PD  T+ T+IQ Y   G    A+ L   +  +
Sbjct: 392 NAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARL 451

Query: 461 K 461
           K
Sbjct: 452 K 452


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 8/333 (2%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAF 169
           A  Q F  +M +  +  + +    L + M    L+P +  +  L++A  +SG L    AF
Sbjct: 61  ATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAF 120

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTII 227
             + +++ V   +PDV TY+ LI +C++    D    +  EM  +  EC     TYN ++
Sbjct: 121 DLLLEVRQVG-LRPDVITYNTLISACSQGSNLDDAVAVFEEM--MASECRPDLWTYNAMV 177

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
             +G+  K ++ E  F  +VE G   PD  T NS++ A+   G+ + +E+   E    G 
Sbjct: 178 SVHGRCGKAQDAERMFRELVEKG-FKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGF 236

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           K D  T N +   YG+ G  D    + D M+     P  VTY ++I++ GK   I    +
Sbjct: 237 KKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGK 296

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             ++M   G+KP  +T+ +L+ AY+K G   +       +  S V  D   +  ++    
Sbjct: 297 VLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIA 356

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ++GD+ K+  L+ TM      PDN  +  M+ A
Sbjct: 357 RSGDMRKLMALYQTMMNDGYRPDNALYQVMLAA 389



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 4/290 (1%)

Query: 127 CKQPEQA-SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           C  P  A  LL EV    GL+P V  Y  L+SA  Q   LD+A +   +M + S+C+PD+
Sbjct: 113 CLAPGSAFDLLLEVR-QVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMA-SECRPDL 170

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +TY+ ++    +  +    E++  E+   G +  AVTYN+++  + K    + +E     
Sbjct: 171 WTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEE 230

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           +V +G    D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+  
Sbjct: 231 LVRAG-FKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMD 289

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
                  V++ M      PT+VT++ +I  + K G  E+    F  M   G+KP+ + Y 
Sbjct: 290 RISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYL 349

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++   +++G + K+ ++ + + N     D   +  +++A  +  + +++
Sbjct: 350 VMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEI 399



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 127/273 (46%), Gaps = 2/273 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    + A  +FE M++   +P +  Y A+VS +G+ G   +A     ++
Sbjct: 137 TYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFREL 196

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD  TY+ L+ +  K    D +E++  E+   G +   +TYNT+I  YGK  +
Sbjct: 197 VE-KGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGR 255

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     +  M  + GC PD  T   +I + G    I    K   E    G+K  + T +
Sbjct: 256 LDLALGLYDEM-RALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFS 314

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y + G  ++       M      P  + Y ++++   ++G + K+   ++ M + 
Sbjct: 315 ALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMND 374

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           G +P++  Y  +++A +K     +++++++ +E
Sbjct: 375 GYRPDNALYQVMLAALAKGNEYDEIEAVVQDME 407



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 3/277 (1%)

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V  ++ ++    +  RFD + ++L  M    +E   V++NT+I+   K+       S+F 
Sbjct: 63  VQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAP-GSAFD 121

Query: 245 AMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
            ++E    G  PD+ T N++ISA     N++     + E      + D+ T N +   +G
Sbjct: 122 LLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHG 181

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G       +   + ++ F P  VTYN ++  F K G  + +E   +++   G K + I
Sbjct: 182 RCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGI 241

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +++  Y K G +     +  ++       D   +  +I + G+   +   G++   M
Sbjct: 242 TYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEM 301

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +    P  +TF+ +I AY   G  E A    + M+A
Sbjct: 302 ADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVA 338



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 144/318 (45%), Gaps = 6/318 (1%)

Query: 144 GLK--PSVD--VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           GLK  PS+D  ++ AL+ AY +SGL + A +  + M       P + + + ++++     
Sbjct: 615 GLKQEPSIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGPL-PTIDSVNGMMRALIIDG 673

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R D +  I+ E+  +G + S  T   ++D + KA    E+   ++ M E+G   P++   
Sbjct: 674 RLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYL-PNMHIY 732

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            SMIS    +     +E    E    G + D+  LN L   Y   G +DK   V   + +
Sbjct: 733 RSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILE 792

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P   TYN +I  + +    E+      +M  +G+ P   +Y SL++A  KA L  +
Sbjct: 793 AGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQ 852

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            + +  ++ +    L+   ++ ++  Y  A +  K  +L  +MKE    P   T   ++ 
Sbjct: 853 AEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMT 912

Query: 440 AYNALGMTEAAQNLENKM 457
           +Y   G  + A+ + N +
Sbjct: 913 SYGTAGHPDEAEKVLNSL 930



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 160/352 (45%), Gaps = 4/352 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K WQ A      L+Q+     R   +  L+    +    E A  +F++M+  G  P++
Sbjct: 602 KIKLWQHAENFVKGLKQEPSIDRR--IWNALIHAYAESGLYEHARAVFDIMIEKGPLPTI 659

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D    ++ A    G LDE +  + +++ +   K    T  +++ + TK      + KI  
Sbjct: 660 DSVNGMMRALIIDGRLDELYVIVQELQDMG-FKISKSTVILMLDAFTKAGDIFEVMKIYN 718

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G   +   Y ++I    + K++ ++E     M E  G  PD+  LN+++  Y  +
Sbjct: 719 GMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEM-ERAGFEPDLTILNTLLLMYTGN 777

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN +K  + Y+     G++ +  T N L   Y R    ++  ++++ M K+   P + +Y
Sbjct: 778 GNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESY 837

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             ++   GKA   E+ E+ F++++ +G + N   Y  L+  Y  A    K + +L  ++ 
Sbjct: 838 KSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKE 897

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +       + ++++YG AG  ++  ++  ++K        + ++T+  AY
Sbjct: 898 DGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAY 949



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 130/314 (41%), Gaps = 46/314 (14%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D   Y  LI    +   F    ++ ++M ++GIE S   Y ++I  Y K    E      
Sbjct: 518 DCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLM 577

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM-GVKA----DIQTLNILT 298
              V+SG     + +  +MI AYG      K++ W +  N + G+K     D +  N L 
Sbjct: 578 DEAVQSGISLNILSSRVTMIEAYG------KIKLWQHAENFVKGLKQEPSIDRRIWNALI 631

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN---------------------------- 330
            +Y  +G+Y+  R+V D M ++   PT+ + N                            
Sbjct: 632 HAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFK 691

Query: 331 -------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
                  ++++ F KAG I ++ + +  MK  G  PN   Y S++S   +      V+ +
Sbjct: 692 ISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELM 751

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++E +    D    N ++  Y   G+ +K  E++ ++ E    P+  T+ T+I  Y+ 
Sbjct: 752 VVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSR 811

Query: 444 LGMTEAAQNLENKM 457
               E    L N+M
Sbjct: 812 NLRPEEGFTLLNEM 825



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             N+M+  Y  SG  + + +  +      ++ D+ + N L  +  ++G      +    +
Sbjct: 65  VFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLL 124

Query: 318 QKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
           + R     P V+TYN +I    +  +++     F++M     +P+  TY ++VS + + G
Sbjct: 125 EVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCG 184

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                + + R++       D   +N ++ A+ + GD + +  +   +       D IT+ 
Sbjct: 185 KAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYN 244

Query: 436 TMIQAYNALGMTEAAQNLENKMIAM 460
           TMI  Y  +G  + A  L ++M A+
Sbjct: 245 TMIHMYGKMGRLDLALGLYDEMRAL 269


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKIL 208
            Y AL+ A  ++  L++A + ++ M+     + D   YS++I+S T+ ++ D  L++K+ 
Sbjct: 211 TYNALIGACARNNDLEKALNLMSRMRQ-DGFQSDFINYSLIIQSLTRTNKIDIPLLQKLY 269

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            E+    IE   +  N II G+ KA         F +MV++ G +P   T  ++ISA GN
Sbjct: 270 EEIESDKIELDGLLLNDIILGFAKAGD-PNRALYFLSMVQASGLNPKTSTFVAVISALGN 328

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  E+ E  + E    G+K  I+  N L K Y R G   +  S++  M+K    P   T
Sbjct: 329 HGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHT 388

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y ++++ +   G  E      K+M+ R ++PN+  +  ++++Y   G   K   +LR+++
Sbjct: 389 YGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMK 448

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           NS+V  D  F+N +I  +G+   ++   E +  M      PD +T+ T+I  +   G  +
Sbjct: 449 NSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHD 508

Query: 449 AAQNLENKM 457
            A  L  +M
Sbjct: 509 RAAELFEEM 517



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 171/365 (46%), Gaps = 13/365 (3%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q      +  TF  ++  LG   + E+A  +FE M   GLKP +  + AL+  Y + G L
Sbjct: 308 QASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSL 367

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA S I++M+  S   PD +TY +L+ +     R++    +L +M    ++ +   ++ 
Sbjct: 368 KEAESIISEMEK-SGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSR 426

Query: 226 IIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           I+  Y   +   E + +F  + E  +    PD    N MI  +G    ++   + Y+   
Sbjct: 427 ILASY---RDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRML 483

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D+ T N L   + + G +D+   + + MQ+R + P   TYNI+I + G+    +
Sbjct: 484 SEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWD 543

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +++    KM+ +G+ PN +TY +LV  Y  +G        L  ++++ +      +N +I
Sbjct: 544 EVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALI 603

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA--MK 461
           +A+ Q G  E+    +  M      P  +   ++I A+      E  +++E   I   MK
Sbjct: 604 NAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFG-----EDRRDIEAFSILQYMK 658

Query: 462 ENSGK 466
           EN  K
Sbjct: 659 ENDVK 663



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 165/380 (43%), Gaps = 18/380 (4%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P+L+ L E I+  K +L     GLL               +++   K   P +A     +
Sbjct: 263 PLLQKLYEEIESDKIELD----GLL------------LNDIILGFAKAGDPNRALYFLSM 306

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           + + GL P    + A++SA G  G  +EA +   +MK     KP +  ++ L+K   +  
Sbjct: 307 VQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKE-GGLKPRIKAFNALLKGYARKG 365

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                E I++EM   G+     TY  ++D Y    ++E        M E+    P+ F  
Sbjct: 366 SLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQM-EARNVQPNTFIF 424

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + ++++Y + G  +K  +   E     VK D    N++  ++G+    D      D M  
Sbjct: 425 SRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLS 484

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P VVT+N +I+   K G+ ++  E F++M+ RG  P   TY  ++++  +     +
Sbjct: 485 EGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDE 544

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           V  +L ++++  ++ +   +  ++  YG +G      +    MK     P    +  +I 
Sbjct: 545 VKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALIN 604

Query: 440 AYNALGMTEAAQNLENKMIA 459
           A+   G++E A N    MI+
Sbjct: 605 AFAQRGLSEQAVNAYRVMIS 624



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 43/215 (20%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++ Y     T+  ++  LG+ ++ ++  +L   M S GL P+V  YT LV  YG SG  
Sbjct: 518 QERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRF 577

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A   +  MKS                                     G++ SA  YN 
Sbjct: 578 NDAIDCLEAMKSA------------------------------------GLKPSATMYNA 601

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG-NSGNIEKME--KWYNEF 282
           +I+ + +    E+  +++  M+ S G  P +  LNS+I+A+G +  +IE     ++  E 
Sbjct: 602 LINAFAQRGLSEQAVNAYRVMI-SDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKEN 660

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           +   VK D+ T   L K+  R   +DK+ +V + M
Sbjct: 661 D---VKPDVVTYTTLMKALIRVDKFDKVPAVYEEM 692


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 37/345 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +  ++L +++ S G+ P V  Y +L+  Y + GL+  A   + DM++   CKP+VY+Y+I
Sbjct: 365 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRN-KGCKPNVYSYTI 423

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+    K  + D    +L EMS  G++ + V +N +I  + K  +  E    F  M   G
Sbjct: 424 LVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 483

Query: 251 GCHPDIFTLNSMIS-----------------------------------AYGNSGNIEKM 275
            C PD++T NS+IS                                   A+   G I++ 
Sbjct: 484 -CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K  NE    G   D  T N L K   RAG  DK RS+ + M +    P+ ++ NI+I  
Sbjct: 543 RKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILING 602

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             ++G +E+  E+ K+M  RG  P+ +T+ SL++   +AG I    ++ R+++   +  D
Sbjct: 603 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 662

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           T  +N ++S   + G V     L     E   VP++ T++ ++Q+
Sbjct: 663 TVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 5/342 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  L+  L KC +  +A  L E M   G  P  + +  ++    +   ++EA   +N M 
Sbjct: 249 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 308

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +    PD  TY  L+    K  R D  + +   +     + ++V +NT+I G+    + 
Sbjct: 309 -IRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPTSVIFNTLIHGFVTHGRL 363

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++ ++  S MV S G  PD+ T NS+I  Y   G +    +   +    G K ++ +  I
Sbjct: 364 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTI 423

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G  D+  ++++ M      P  V +N +I  F K   I +  E F++M  +G
Sbjct: 424 LVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 483

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            KP+  T+ SL+S   +   I     +LR + +  V+ +T  +N +I+A+ + G++++  
Sbjct: 484 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 543

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +L   M  +  + D IT+ ++I+     G  + A++L  KM+
Sbjct: 544 KLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/364 (18%), Positives = 157/364 (43%), Gaps = 6/364 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++++F     Q+ Y+     +  L+  LG   + +    L   M  +G+     ++ +++
Sbjct: 88  SMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIM 147

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y ++G   +    + +M++V  C+P   +Y+++++     +   +   +  +M    I
Sbjct: 148 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 207

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +  T+  ++       + +   S    M + G C P+     ++I +      + +  
Sbjct: 208 PPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHG-CVPNSVIYQTLIHSLSKCNRVNEAL 266

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +   E  LMG   D +T N +     +    ++   +++ M  R F P  +TY  ++   
Sbjct: 267 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGL 326

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILD 395
            K G ++  ++ F    +R  KP S+ + +L+  +   G +    ++L  +  S  ++ D
Sbjct: 327 CKIGRVDAAKDLF----YRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 382

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +N +I  Y + G V    E+   M+ + C P+  ++  ++  +  LG  + A NL N
Sbjct: 383 VCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLN 442

Query: 456 KMIA 459
           +M A
Sbjct: 443 EMSA 446


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 1/262 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+YTY+ +I  C    +     +++AEM   GI+C+  TY+ +++   KA + +  +  +
Sbjct: 275 DLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVY 334

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M+E G C P++ T N +I  Y      E+  K  +      ++A+++T N +  +  +
Sbjct: 335 KQMLEEG-CSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNK 393

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G  ++   V + M      P+  TY  +I  +GK G +EK  E F+ M  RG + N IT
Sbjct: 394 SGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVIT 453

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y SL+SA  KAG       +  ++   +   +   FN +I+A    G  EK  ELF  M+
Sbjct: 454 YSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQ 513

Query: 424 ERHCVPDNITFATMIQAYNALG 445
            + C PD+IT+  +I AY   G
Sbjct: 514 TQGCKPDSITYCGLITAYERGG 535



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 7/331 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQ---QQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEV 139
           L E  KQ   + A++IF  LR         + C   T+T ++   G  +Q  +A  L   
Sbjct: 242 LKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAE 301

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M S G+  +V  Y+AL++   ++  LD A      M     C P++ TY+ILI    K  
Sbjct: 302 MRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLE-EGCSPNLVTYNILIDVYVKRC 360

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +++   K+L  +    I+    TYNT+I    K+ + E+    +  M+ + G  P   T 
Sbjct: 361 QWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKML-AAGVKPSATTY 419

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            ++ISAYG  G +EK  + + +    G + ++ T + L  +  +AG ++    +   M K
Sbjct: 420 TALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHK 479

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P VVT+N +I      GH EK  E F++M+ +G KP+SITYC L++AY + G   +
Sbjct: 480 ENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRR 539

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAG 410
                 Q++      D   FN ++    Q+G
Sbjct: 540 ALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 4/289 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           YT ++S  G    L  A   + +M+S   DC  +V+TYS L+  C K +  DL + +  +
Sbjct: 279 YTTMISQCGSHQQLRRALELVAEMRSRGIDC--NVHTYSALMNVCIKANELDLAQDVYKQ 336

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   + VTYN +ID Y K  ++EE       + E      ++ T N++ISA   SG
Sbjct: 337 MLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTL-EKQAIQAEVRTYNTVISACNKSG 395

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             E+  K Y +    GVK    T   L  +YG+ G  +K   +   M +R     V+TY+
Sbjct: 396 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYS 455

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I    KAG  E   E F KM     KPN +T+ SL++A S  G   K   +  Q++  
Sbjct: 456 SLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQ 515

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
               D+  +  +I+AY + G   +  + F  M+ + C PD   F ++++
Sbjct: 516 GCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLME 564



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ LM +  K  + + A  +++ ML +G  P++  Y  L+  Y +    +EA   ++ 
Sbjct: 312 HTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDT 371

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  +  + +V TY+ +I +C K  + +   K+  +M   G++ SA TY  +I  YGK  
Sbjct: 372 LEKQA-IQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKG 430

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+    F  M+  G C  ++ T +S+ISA   +G  E   + +++ +    K ++ T 
Sbjct: 431 QVEKALEIFRDMIRRG-CERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTF 489

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  +    G ++K   + + MQ +   P  +TY  +I  + + G   +  + F++M+ 
Sbjct: 490 NSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQT 549

Query: 355 RGMKPNSITYCSLVSAYSKAGLIM 378
           +G  P++  + SL+    ++G+++
Sbjct: 550 QGCHPDAAVFNSLMEVLWQSGVLL 573



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 298 TKSYGRAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           T    + G + ++R  ++    M+ R     V TY+ ++    KA  ++  ++ +K+M  
Sbjct: 280 TTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLE 339

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +TY  L+  Y K     +   +L  +E   +  +   +N +ISA  ++G  E+
Sbjct: 340 EGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQ 399

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +++  M      P   T+  +I AY   G  E A  +   MI
Sbjct: 400 ALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMI 443



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 10/178 (5%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------VVTYNIVIETFGKAGH 341
           D   +  L K   + G   +   + D++  R   P+        + TY  +I   G    
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWL--RNLEPSHELSSLCDLYTYTTMISQCGSHQQ 291

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +  E   +M+ RG+  N  TY +L++   KA  +     + +Q+       +   +N 
Sbjct: 292 LRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNI 351

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +I  Y +    E+  ++  T++++    +  T+ T+I A N  G  E A  +  KM+A
Sbjct: 352 LIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLA 409


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 185/391 (47%), Gaps = 9/391 (2%)

Query: 74  KNLWPKPVL----EALDEAIKQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCK 128
           KN   +P L      L + +K  K +L  K+F G+   +        T+T ++    K  
Sbjct: 172 KNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDV--YTYTNMISAHCKVG 229

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
             + A  +   M   G  P++  Y  ++    ++ LLDEA      M       PD+YTY
Sbjct: 230 NVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVD-KGLVPDLYTY 288

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            ILI       R    + +L EM  +G++   +TYN +IDG+ +    E+       MV 
Sbjct: 289 DILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV- 347

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           + G   ++   N++++    +G +EK  +   E    GV+ D QT ++L + + R     
Sbjct: 348 ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMA 407

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           +   ++D M+KR   PTV+TY+++I    + G+++      ++M   G+KPN++ Y +L+
Sbjct: 408 RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLM 467

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
           +A++K G + +   IL ++    ++ D   +N +I  + +A  +E+     + M ER   
Sbjct: 468 TAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLR 527

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           P+  T+   I  Y+  G  E A    N+M++
Sbjct: 528 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 558



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 171/359 (47%), Gaps = 7/359 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASL--LFEVMLS 142
           L+   K  K + AL+I   +  ++  +   QT++  +++ G C+    A    L + M  
Sbjct: 362 LNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYS--LLIEGHCRGQNMARAFELLDEMKK 418

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             L P+V  Y+ +++   + G L    + + +M  ++  KP+   Y+ L+ +  K  R +
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREM-VMNGLKPNAVVYTTLMTAHAKEGRVE 477

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               IL  M   GI      YN++I G+ KAK+ EE  +    M+E     P+  T  + 
Sbjct: 478 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAF 536

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  Y  +G +E  ++++NE    GV  ++     L + + + G   +  SV  F+  R  
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 596

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
              V TY+++I    + G + +    F +++ +G+ PN+ TY SL+S   K G + K   
Sbjct: 597 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 656

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +L ++    +  D   +N +I    +AG++E+   LF  ++ R   P+ +T+A M+  Y
Sbjct: 657 LLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 169/378 (44%), Gaps = 38/378 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L +C   +  + +   M+ +GLKP+  VYT L++A+ + G ++E+   +  M
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PDV+ Y+ LI    K  R +     L EM    +  +A TY   IDGY KA +
Sbjct: 487 RE-QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGE 545

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E  +  F+ M+ S G  P++    ++I  +   GN+ +    +       V  D+QT +
Sbjct: 546 MEIADRYFNEML-SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYS 604

Query: 296 ILTKSYGR-----------------------------------AGMYDKMRSVMDFMQKR 320
           +L     R                                    G  DK   +++ M  +
Sbjct: 605 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 664

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +VTYNI+I+   KAG IE+ +  F  ++ RG+ PN +TY ++V  Y K+      
Sbjct: 665 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 724

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L ++    V  D   +N I++   +    EK  +LF  M E+      ++F T+I+ 
Sbjct: 725 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEG 783

Query: 441 YNALGMTEAAQNLENKMI 458
           Y   G  + A +L  +MI
Sbjct: 784 YCKSGKLQEANHLLEEMI 801



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 160/336 (47%), Gaps = 5/336 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+    +A  +F  +LS  +   V  Y+ L+    ++G + EAF   ++++      
Sbjct: 574 GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE-KGLL 632

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+ +TY+ LI    K    D   ++L EM   GI    VTYN +IDG  KA + E  ++ 
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 692

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F   +E  G  P+  T  +M+  Y  S N     +   E  L GV  D    N++     
Sbjct: 693 FDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCC 751

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +   ++K   +   M ++ F  TV ++N +IE + K+G +++     ++M  +   PN +
Sbjct: 752 KEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL+    KAG++ +   +  +++  +V+     +  ++  Y   G++ ++  LF  M
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +   PD +T+  MI AY   G    A  L+++++
Sbjct: 871 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 906



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 170/386 (44%), Gaps = 54/386 (13%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  L++   K K+ E+A      ML   L+P+   Y A +  Y ++G ++ A    N+M 
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 557

Query: 177 SVSDCKPDVYTYSILIKSCTK---------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           S     P+V  Y+ LI+   K           RF L  ++L ++          TY+ +I
Sbjct: 558 SCG-VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ---------TYSVLI 607

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            G  +  K  E    FS + E G   P+ FT NS+IS     GN++K  +   E  + G+
Sbjct: 608 HGLSRNGKMHEAFGIFSELQEKG-LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 666

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             DI T NIL     +AG  ++ +++ D ++ R   P  VTY  +++ + K+ +     +
Sbjct: 667 NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQ 726

Query: 348 YFKKMKHRGMKPN----------------------------------SITYCSLVSAYSK 373
             ++M  RG+ P+                                  ++++ +L+  Y K
Sbjct: 727 LLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCK 786

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +G + + + +L ++     I +   +  +I    +AG + +   L+L M+ER+ +P   T
Sbjct: 787 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 846

Query: 434 FATMIQAYNALGMTEAAQNLENKMIA 459
           + +++  Y+ +G       L  +M+A
Sbjct: 847 YTSLLHGYHNIGNMSEVSALFEEMVA 872



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 156/342 (45%), Gaps = 3/342 (0%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T+  L+  L K  + E+A  LF+ +   GL P+   Y A+V  Y +S     AF  + +M
Sbjct: 672  TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 731

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +    PD + Y++++  C K  +F+    +  EM   G   S V++NT+I+GY K+ K
Sbjct: 732  L-LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGK 789

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +E       M+E     P+  T  S+I     +G + + ++ + E     V    +T  
Sbjct: 790  LQEANHLLEEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYT 848

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
             L   Y   G   ++ ++ + M  +   P  +TY ++I+ + + G++ +  +   ++  +
Sbjct: 849  SLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVK 908

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            GM  +   Y +L+ A  K     +V  +L ++  S   L  P  + I   +  AG++++ 
Sbjct: 909  GMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEA 968

Query: 416  GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E+  +M +   V +  +   ++        +E + NL  +M
Sbjct: 969  AEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 139/312 (44%), Gaps = 2/312 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+  ++  L+ +Y + G L EA +     K+  + +P + + + L+    K ++ +L  K
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNF-EFRPSLLSCNSLLGDLLKGNKVELFWK 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +   M    +     TY  +I  + K    ++ +     M E  GC P++ T N +I   
Sbjct: 202 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEK-GCSPNLVTYNVIIGGL 260

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +  +++  +        G+  D+ T +IL   +       + + ++  M      P  
Sbjct: 261 CRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEP 320

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TYN +I+ F + G IE+      +M   G++ N I + +L++   KAG + K   I+++
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 380

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +    V  D+  ++ +I  + +  ++ +  EL   MK+R   P  +T++ +I      G 
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 447 TEAAQNLENKMI 458
            +    +  +M+
Sbjct: 441 LQGTNAILREMV 452



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 2/168 (1%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
            Q++      +T+T L+          + S LFE M++ G++P    Y  ++ AY + G +
Sbjct: 836  QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 895

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             EA   + D   V      V  Y  LI++  K   F  + K+L E+   G      T + 
Sbjct: 896  MEA-CKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSV 954

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            I  G+  A   +E      +MV+ G    +  +L  ++    N  N E
Sbjct: 955  IARGFQIAGNMDEAAEVLRSMVKFGWV-SNTTSLGDLVDGNQNGANSE 1001


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 159/337 (47%), Gaps = 38/337 (11%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + ++  LG+  + E A  +F+  L++G   +V  ++A++SAYG+SG  +EA         
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAI-------- 132

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KF 236
                                       KI   M   G++ + VTYN +ID  GK   +F
Sbjct: 133 ----------------------------KIFYSMKDYGLKPNLVTYNAVIDACGKGGVEF 164

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           + +   F  M+ +G   PD  T NS+++     G  E       E    G+  DI T N 
Sbjct: 165 KRVLEIFDEMLRNG-MQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNT 223

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  +  + G  D    +M  M  +   P VVTY+ +I+ + KAG ++     F +MK  G
Sbjct: 224 LLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLG 283

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +  + ++Y +L+S Y+K G   +   + R++ENS +  D   +N ++  YG+    + + 
Sbjct: 284 ISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVR 343

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++F  MK RH  P+ +T++T+I  Y+  G+   A ++
Sbjct: 344 KVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDV 380



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 147/280 (52%), Gaps = 2/280 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F+ ML +G++P    + +L++   + GL + A S   +M +      D++TY+ L+ + 
Sbjct: 170 IFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVN-RGIDQDIFTYNTLLDAV 228

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  + D+  +I++EM    I  + VTY+T+IDGY KA + ++  + F+ M +  G   D
Sbjct: 229 CKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEM-KFLGISLD 287

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             + N+++S Y   G  E+      E    G++ D+ T N L   YG+   YD +R V +
Sbjct: 288 RVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFE 347

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R   P ++TY+ +I+ + K G   +  + F++ K  G+K + + Y +L+ A  K G
Sbjct: 348 EMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNG 407

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           L+    S+L ++    +  +   +N II A+G+    E +
Sbjct: 408 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESV 447



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           ++MIS  G  G +E  +  +      G    +   + +  +YGR+G  ++   +   M+ 
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 320 RFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
               P +VTYN VI+  GK G   +++ E F +M   GM+P+ IT+ SL++  SK GL  
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
              S+  ++ N  +  D   +N ++ A  + G ++   E+   M  ++ +P+ +T++TMI
Sbjct: 201 AARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMI 260

Query: 439 QAYNALGMTEAAQNLENKM 457
             Y   G  + A+NL N+M
Sbjct: 261 DGYAKAGRLDDARNLFNEM 279



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           + +I   G+  K E  ++ F A +  G  +  ++  +++ISAYG SG   +  K +    
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNT-VYAFSAIISAYGRSGYCNEAIKIFYSMK 139

Query: 284 LMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
             G+K ++ T N +  + G+ G+ + ++  + D M +    P  +T+N ++    K G  
Sbjct: 140 DYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLW 199

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E       +M +RG+  +  TY +L+ A  K G +     I+ ++   +++ +   ++ +
Sbjct: 200 EAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTM 259

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
           I  Y +AG ++    LF  MK      D +++ T++  Y  LG  E A ++  +M    E
Sbjct: 260 IDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREM----E 315

Query: 463 NSG 465
           NSG
Sbjct: 316 NSG 318


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 154/290 (53%), Gaps = 2/290 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  +F+ M +   KP++  +TALV+A  + GL ++A      M+  +  +PDVY Y+ L+
Sbjct: 15  AQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQE-AGYEPDVYAYNALM 73

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           +S ++        +I + M ++G E    +YN ++D YG+A   E+ ++ F  M +  G 
Sbjct: 74  ESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEM-KRIGI 132

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P + +   ++SAY ++GN+ K E    + +  G+K D   +N +   YGR G + KM  
Sbjct: 133 TPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMED 192

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           +   MQK      + TYNI+I  +G+AG +E+MEE F+ +  + ++P+ +T+ S + AYS
Sbjct: 193 LFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYS 252

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +  L  +   +  ++ ++    D      ++SA      +E++  +  TM
Sbjct: 253 RKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM 302



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 145/300 (48%), Gaps = 9/300 (3%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +++ K  +A  IF  +R Q+     C TFT L+  L +    E+A  +FE M   G +P 
Sbjct: 7   VQESKSHMAQNIFDEMRTQRCKPNIC-TFTALVNALAREGLCEKAEEIFEQMQEAGYEPD 65

Query: 149 VDVYTALVSAYGQSGL---LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           V  Y AL+ +Y ++G      E FS +  M     C+PD  +Y+I++ +  +    +  +
Sbjct: 66  VYAYNALMESYSRAGFPYGAAEIFSLMQHM----GCEPDRASYNIMVDAYGRAGLHEDAQ 121

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +  EM  +GI  +  ++  ++  Y  A    + E     M +S G  PD F +NSM++ 
Sbjct: 122 AVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS-GLKPDTFVMNSMLNL 180

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           YG  G   KME  ++       +ADI T NIL   YGRAG  ++M  +   +  +   P 
Sbjct: 181 YGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 240

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VVT+   I  + +    ++  E F+KM   G  P+  T   L+SA S    I +V +++R
Sbjct: 241 VVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVR 300



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 134/256 (52%), Gaps = 1/256 (0%)

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           + + I  EM     + +  T+  +++   +    E+ E  F  M E+G   PD++  N++
Sbjct: 14  MAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAG-YEPDVYAYNAL 72

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + +Y  +G      + ++    MG + D  + NI+  +YGRAG+++  ++V + M++   
Sbjct: 73  MESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGI 132

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            PT+ ++ +++  +  AG++ K E+   +M   G+KP++    S+++ Y + G   K++ 
Sbjct: 133 TPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMED 192

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +   ++      D   +N +I+ YG+AG VE+M ELF  +  ++  PD +T+ + I AY+
Sbjct: 193 LFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYS 252

Query: 443 ALGMTEAAQNLENKMI 458
              + +    L  KMI
Sbjct: 253 RKKLYKRCLELFEKMI 268



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 1/287 (0%)

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I D      CKP++ T++ L+ +  +    +  E+I  +M   G E     YN +++ Y
Sbjct: 17  NIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESY 76

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +A  F    +   ++++  GC PD  + N M+ AYG +G  E  +  + E   +G+   
Sbjct: 77  SRAG-FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPT 135

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +++  +L  +Y  AG   K   ++  M K    P     N ++  +G+ G   KME+ F 
Sbjct: 136 MKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFS 195

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M+    + +  TY  L++ Y +AG + +++ + + +   ++  D   +   I AY +  
Sbjct: 196 TMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKK 255

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ++  ELF  M +  C PD  T   ++ A ++    E   N+   M
Sbjct: 256 LYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM 302



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 3/253 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+  Y+     +  LM    +   P  A+ +F +M   G +P    Y  +V AYG++GL 
Sbjct: 58  QEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 117

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A +   +MK +    P + ++ +L+ + +        E I+ +M   G++      N+
Sbjct: 118 EDAQAVFEEMKRIG-ITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNS 176

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +++ YG+  +F +ME  FS M + G C  DI T N +I+ YG +G +E+ME+ +      
Sbjct: 177 MLNLYGRLGQFGKMEDLFSTM-QKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAK 235

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            ++ D+ T      +Y R  +Y +   + + M     +P   T  +++        IE++
Sbjct: 236 NLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQV 295

Query: 346 EEYFKKMKHRGMK 358
               + M H+ +K
Sbjct: 296 TNVVRTM-HKDLK 307


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 175/384 (45%), Gaps = 15/384 (3%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQ-------------TFTKLMVMLGKCKQPEQA 133
           + +    ++L+L + GLL  ++W  A C              T+  L+    +  +  +A
Sbjct: 361 QGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREA 420

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             LF+ M   G+KPS++ Y +L+  Y + G +DEA    ++M  +   KP+V TY  L++
Sbjct: 421 LNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEM-PMEGFKPNVVTYITLMR 479

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
                  FD    +L EM   G+ C+  TYN +I+G     +  E++    + + S G  
Sbjct: 480 GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFM-SEGFI 538

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P + T NS+I+ +  +G +      Y +    G+  +I T       Y R G  D    +
Sbjct: 539 PTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKM 598

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           ++ +++R   P +V YN +I  F + G++    +    +   G+ PN++ Y SL++ Y  
Sbjct: 599 LNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKN 658

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
             ++ +V      +    ++ DT  +  +I  + + G+V    EL+  M  +  +PD  T
Sbjct: 659 LNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFT 718

Query: 434 FATMIQAYNALGMTEAAQNLENKM 457
           F  +       G  + A+ L  +M
Sbjct: 719 FTALTHGLCRSGDIDGAKKLLEEM 742



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 171/411 (41%), Gaps = 43/411 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLS 142
           +D  +K  + + AL++   +R       +        +M G C + E   A  LF+  L 
Sbjct: 269 VDVLVKTGRMEEALRVNDEMRDAG---KKMDVIVATTLMRGYCLRQEVGNALNLFKETLK 325

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           DG+ P+  +Y  L+    Q G+  +A+     M       P  +  S+++K      R+ 
Sbjct: 326 DGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTG-QGLLPSTFELSLVLKGLLNDRRWK 384

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               +  EM+  G+     TYN +I  + +A K  E  + F  M +  G  P I T NS+
Sbjct: 385 DAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNLFDRM-KKAGVKPSINTYNSL 442

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ---- 318
           +  Y   G +++  K Y+E  + G K ++ T   L + Y     +D   +++D M+    
Sbjct: 443 LMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGV 502

Query: 319 ---------------------------KRF----FFPTVVTYNIVIETFGKAGHIEKMEE 347
                                      K F    F PT++TYN +I  F KAG +     
Sbjct: 503 SCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFT 562

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            +++M+ +G+ PN ITY S +  Y + G       +L  V    +  D   +N +I+ + 
Sbjct: 563 VYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFC 622

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           Q G++    +L + + +    P+ + + ++I  Y  L M +        MI
Sbjct: 623 QEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMI 673



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 2/234 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +++ M   GL P++  YT+ +  Y ++G  D A   +ND++     +PD+  Y+ LI   
Sbjct: 563 VYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRR-RGLQPDIVAYNALINGF 621

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +        ++L  +   G+  + V YN++I GY      +E+   + +M++ GG   D
Sbjct: 622 CQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIK-GGIVAD 680

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T  ++I  +   GN+    + Y+E    G   D  T   LT    R+G  D  + +++
Sbjct: 681 TSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLE 740

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
            M++    P V  YN++I  + +   +++      +M + G++P+  TY  LVS
Sbjct: 741 EMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVS 794



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 125/275 (45%), Gaps = 4/275 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           + LL + +     C  +T  +++ G C   +  +   + +  +S+G  P++  Y ++++ 
Sbjct: 491 YALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIING 550

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + ++G++  AF+    M+      P++ TY+  I    +    D+  K+L ++   G++ 
Sbjct: 551 FVKAGMMGSAFTVYQQMRE-KGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQP 609

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             V YN +I+G+ +             +++ G   P+    NS+I+ Y N   ++++ K+
Sbjct: 610 DIVAYNALINGFCQEGNMSHALQLLVILLKDG-LAPNTVVYNSLITGYKNLNMMKEVSKF 668

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y      G+ AD  T   L   + + G       +   M  + + P   T+  +     +
Sbjct: 669 YESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCR 728

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +G I+  ++  ++M+   ++PN   Y  L++ Y +
Sbjct: 729 SGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLR 763



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 88/430 (20%), Positives = 162/430 (37%), Gaps = 72/430 (16%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R +  Y+     F  LM    K    E A  LF+ M    + P   VY   +
Sbjct: 176 ALALFMEMRGR-GYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAI 234

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +A  + G    A   + +MK V     D +TY  ++    K  R +   ++  EM   G 
Sbjct: 235 TALCKLGDGGRALRMLREMKEVGFDTCD-FTYRTMVDVLVKTGRMEEALRVNDEMRDAGK 293

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------------GCH---------- 253
           +   +   T++ GY   ++     + F   ++ G             GC           
Sbjct: 294 KMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYE 353

Query: 254 -----------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                      P  F L+ ++    N    +     + E    G+  D+ T N L   + 
Sbjct: 354 LCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHC 412

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +A    +  ++ D M+K    P++ TYN ++  + K G +++  + + +M   G KPN +
Sbjct: 413 QAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVV 472

Query: 363 TYCSLVSAYSKA------------------------------GLIM-----KVDSILRQV 387
           TY +L+  Y                                 G+ M     +VD +L+  
Sbjct: 473 TYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSF 532

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            +   I     +N II+ + +AG +     ++  M+E+   P+ IT+ + I  Y   G +
Sbjct: 533 MSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCS 592

Query: 448 EAAQNLENKM 457
           + A  + N +
Sbjct: 593 DMALKMLNDV 602



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/326 (19%), Positives = 139/326 (42%), Gaps = 3/326 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           T L++   +    + A  LF  M   G +    ++ AL+SA  + G+ ++A    ++M  
Sbjct: 161 TDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPG 220

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            ++  PD   Y++ I +  K        ++L EM  +G +    TY T++D   K  + E
Sbjct: 221 -AEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRME 279

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E       M ++G    D+    +++  Y     +      + E    G+        +L
Sbjct: 280 EALRVNDEMRDAGK-KMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVL 338

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            +   + GM  K   +   M  +   P+    ++V++        +     F++M   G+
Sbjct: 339 IRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL 398

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P+  TY +L+  + +A  + +  ++  +++ + V      +N ++  Y + G +++  +
Sbjct: 399 -PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVK 457

Query: 418 LFLTMKERHCVPDNITFATMIQAYNA 443
           L+  M      P+ +T+ T+++ Y A
Sbjct: 458 LYSEMPMEGFKPNVVTYITLMRGYIA 483



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 84/216 (38%), Gaps = 1/216 (0%)

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           +++ MV + G  PDI +   ++       + +     + E    G + D    + L  + 
Sbjct: 144 TYAHMV-ARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSAC 202

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + GM++    + D M      P    Y + I    K G   +     ++MK  G     
Sbjct: 203 LKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCD 262

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY ++V    K G + +   +  ++ ++   +D      ++  Y    +V     LF  
Sbjct: 263 FTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKE 322

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +   VP  + +  +I+  + +GMT+ A  L  +M
Sbjct: 323 TLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQM 358


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 159/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-----------------SV 178
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                 S 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 179 SDCK-----------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
             C                  PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYXENKKFLEALSVFSEMREIK-CXLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 164/353 (46%), Gaps = 10/353 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T ++  L K K+ ++A  L E + ++G  P++  Y AL++   + G L+EA   I+ 
Sbjct: 35  HTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDL 91

Query: 175 MKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++ + D  C PDV TY+ LI    K  R     K+  EM+  G+    V Y  +I G  +
Sbjct: 92  LRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 151

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A K  +  S +  M  S GC PD+ TL++MI     +G I    + +      G+  +  
Sbjct: 152 AGKIPQASSVYKTMT-SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEV 210

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             + L     +A   D    ++  M+K F  P  +TYNI+I+   K+G +     +F +M
Sbjct: 211 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEM 270

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G KP+  TY  L+S + KAG       +   + +S    +   +  +IS   +   +
Sbjct: 271 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQL 330

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            K    +  MKER C PD+  +++++      G  E    L ++M    E SG
Sbjct: 331 TKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM----ERSG 379



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 128/277 (46%), Gaps = 2/277 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  LGK K+  +A  LF+ M S GL      YTAL+    Q+G + +A S    M
Sbjct: 106 TYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTM 165

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV T S +I    K  R     +I   M   G+  + V Y+ +I G  KA+K
Sbjct: 166 TS-QGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 224

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +      + M +   C PD  T N +I     SG++     +++E    G K D+ T N
Sbjct: 225 MDCALEMLAQM-KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYN 283

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   + +AG  D    V D M      P VVTY  +I    K   + K   Y++ MK R
Sbjct: 284 ILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKER 343

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           G  P+S  Y SLV    K+G +     +  ++E S V
Sbjct: 344 GCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 380



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 10/310 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD----LIEKI 207
           ++ L++   ++G+L +A S   +  + + C  D++TY+ ++    K  +      L+EKI
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQE-TTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
            A     G   +  TYN +++G  K  + EE       +V++G C PD+ T  S+I   G
Sbjct: 61  TAN----GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLG 115

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
                 +  K + E    G+  D      L +   +AG   +  SV   M  +   P VV
Sbjct: 116 KKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVV 175

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T + +I+   KAG I      FK M+ RG+ PN + Y +L+    KA  +     +L Q+
Sbjct: 176 TLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 235

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           + +    DT  +N +I    ++GDV      F  M E  C PD  T+  +I  +   G T
Sbjct: 236 KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNT 295

Query: 448 EAAQNLENKM 457
           +AA  + + M
Sbjct: 296 DAACGVFDDM 305



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T + +I+    +G + +      E    G   DI T   +     +     +  ++M+ +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
                 PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K    
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   + +++ +  + LDT  +  +I    QAG + +   ++ TM  + CVPD +T +TM
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 438 IQAYNALGMTEAAQNLENKMIA 459
           I      G   AA  +   M A
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEA 202


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 5/361 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +T ++  L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + D
Sbjct: 175 RAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLD 234

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               +  +PD +T S +I +C +    D       ++   G     VTYN ++  +GKA 
Sbjct: 235 EMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAG 294

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E       M E  GC PD  T N +   Y  +G  E+  +  +     G+  +  T 
Sbjct: 295 NYTEALRVLGEM-EQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTY 353

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +YG  G  D+  ++ D M+K  F P V TYN+V+   GK      M E   +M  
Sbjct: 354 NTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSR 413

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +T+ ++++   K G+   V  +L  + +  V L    +N +I+AYG+ G    
Sbjct: 414 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTN 473

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQ 470
             +++  M      P   T+  ++   +  G    AQ++ +KM        E S   L+Q
Sbjct: 474 AFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQ 533

Query: 471 C 471
           C
Sbjct: 534 C 534



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 161/385 (41%), Gaps = 38/385 (9%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           +I  LL + +        FT   V+   C+    ++A   FE + + G  P V  Y AL+
Sbjct: 228 RIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALL 287

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             +G++G   EA   + +M+  + C+PD  TY+ L  +  +   F+   + L  M+  G+
Sbjct: 288 QVFGKAGNYTEALRVLGEMEQ-NGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGL 346

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------------------------- 250
             +A TYNT++  YG   K +E  + F  M ++G                          
Sbjct: 347 LPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLE 406

Query: 251 --------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC P+  T N+M++  G  G  + + +        GV+    T N L  +YG
Sbjct: 407 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYG 466

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G       + + M    F P + TYN ++    + G     +    KM+ +G KPN  
Sbjct: 467 RCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQ 526

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQAGDVEKMGELFLT 421
           +Y  L+  Y+K G +  + +I  +V  S  +  +      ++ A  +   ++ M   F  
Sbjct: 527 SYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQE 586

Query: 422 MKERHCVPDNITFATMIQAYNALGM 446
           +K R   PD + F +M+  Y   GM
Sbjct: 587 VKARGYNPDLVIFNSMLSIYAKNGM 611



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 143/294 (48%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +V A G+ G  D   + +++       + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 144 VVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQ 203

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A    G +++
Sbjct: 204 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDE 263

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              ++ +    G    + T N L + +G+AG Y +   V+  M++    P  VTYN +  
Sbjct: 264 AVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAG 323

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           T+ +AG  E+       M  +G+ PN+ TY ++++AY   G + +  ++  Q++ +  + 
Sbjct: 324 TYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVP 383

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   +N ++   G+      M E+   M    C P+ +T+ TM+      GM +
Sbjct: 384 NVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMED 437



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 165/353 (46%), Gaps = 3/353 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ ++ + L++ G + +      R  T+  ++ + GK    +  + + E M S G++ S 
Sbjct: 397 KKSRFTVMLEMLGEMSRSGCTPNRV-TWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSR 455

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D Y  L++AYG+ G    AF   N+M S +   P + TY+ L+   ++   +   + I++
Sbjct: 456 DTYNTLIAAYGRCGSRTNAFKMYNEMTS-AGFTPCITTYNALLNVLSRQGDWSTAQSIVS 514

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M   G + +  +Y+ ++  Y K      + +  + +  SG   P    L +++ A    
Sbjct: 515 KMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKC 574

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             ++ ME  + E    G   D+   N +   Y + GMY K   V D +++    P ++TY
Sbjct: 575 RRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITY 634

Query: 330 NIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           N +++ + K     + E+   ++K  + MKP+ ++Y ++++ + K GL+ +   +L ++ 
Sbjct: 635 NSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMV 694

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +      ++ ++  Y       +  E+   M +    P  +T+  ++++Y
Sbjct: 695 ADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESY 747



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 3/189 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++ +  K     +A+ +F+ +   GL P +  Y +L+  Y +     EA   +N +K
Sbjct: 599 FNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK 658

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                KPDV +Y+ +I    K       +++L+EM   G+   AVTY+T++ GY   + F
Sbjct: 659 CSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMF 718

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN- 295
            E       MV+  G  P   T   ++ +Y  +   E+   + +E +   +  D + L  
Sbjct: 719 SEAREVIGYMVQH-GLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDKKALEA 777

Query: 296 -ILTKSYGR 303
            I    +GR
Sbjct: 778 YIEDAQFGR 786


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 168/352 (47%), Gaps = 2/352 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++   QT++ LMV LGK +  E    L + M + GLKP+V  +T  +   G++G ++EA+
Sbjct: 221 FRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAY 280

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +  M     C PDV TY++LI +     + D  +++ A+M     +   VTY T++D 
Sbjct: 281 EILKRMDD-EGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDR 339

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +   +  + +   +S M E  G  PD+ T   ++ A   +GN  +     +     G+  
Sbjct: 340 FSDNRDLDSVNQFWSEM-EKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILP 398

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ T N L     R    D    + D M+     PT  TY + I+ +GK+G      E F
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           +KMK +G+ PN +   + + + +KAG   +   I   +++  ++ D+  +N ++  Y + 
Sbjct: 459 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 518

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           G++++  +L   M E  C PD I   ++I         + A  +  +M  MK
Sbjct: 519 GEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 570



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 180/359 (50%), Gaps = 3/359 (0%)

Query: 101 FGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           F L + +++ +     ++  L+ +L K +   +A  ++  M+ DG +PS+  Y++L+   
Sbjct: 176 FALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGL 235

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
           G+   ++     + +M+++   KP+VYT++I I+   +  + +   +IL  M   G    
Sbjct: 236 GKRRDIESVMGLLKEMETLG-LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPD 294

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            VTY  +ID    A+K +  +  F+ M ++G   PD  T  +++  + ++ +++ + +++
Sbjct: 295 VVTYTVLIDALCTARKLDCAKEVFAKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVNQFW 353

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E    G   D+ T  IL  +  +AG + +  + +D M+ +   P + TYN +I    + 
Sbjct: 354 SEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRV 413

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             ++   E F  M+  G+KP + TY   +  Y K+G  +       +++   +  +    
Sbjct: 414 HRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 473

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           N  + +  +AG   +  ++F  +K+   VPD++T+  M++ Y+ +G  + A  L ++M+
Sbjct: 474 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMV 532



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 162/354 (45%), Gaps = 3/354 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D     +K   A ++F  ++  +    R  T+  L+      +  +  +  +  M  DG
Sbjct: 302 IDALCTARKLDCAKEVFAKMKTGRHKPDRV-TYITLLDRFSDNRDLDSVNQFWSEMEKDG 360

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V  +T LV A  ++G   EAF+ ++ M+      P+++TY+ LI    + HR D  
Sbjct: 361 HVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD-QGILPNLHTYNTLICGLLRVHRLDDA 419

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I   M  LG++ +A TY   ID YGK+        +F  M ++ G  P+I   N+ + 
Sbjct: 420 LEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM-KTKGIAPNIVACNASLY 478

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +   +G   + ++ +     +G+  D  T N++ K Y + G  D+   ++  M +    P
Sbjct: 479 SLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEP 538

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V+  N +I T  KA  +++  + F +MK   +KP  +TY +L++   K G I +   + 
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 598

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             +       +T  FN +     +  +V    ++   M +  CVPD  T+ T+I
Sbjct: 599 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 652



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 151/326 (46%), Gaps = 4/326 (1%)

Query: 111  QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
            Q +  T+  L+  L +    E A  +F  + + G  P V  Y  L+ AYG+SG +DE F 
Sbjct: 784  QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFE 843

Query: 171  TINDMKSVSDCKPDVYTYSILIKSCTKFHRFD-LIEKILAEMSYLGIECSAVTYNTIIDG 229
               +M S  +C+P+  T++I+I    K    D  ++     MS      +A TY  +IDG
Sbjct: 844  IYKEM-SAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDG 902

Query: 230  YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
              K+ +  E +  F  M + G C P+    N +I+ +G +G  +     +      GV+ 
Sbjct: 903  LSKSGRLYEAKQLFEGMSDYG-CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRP 961

Query: 290  DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            D++T ++L       G  D+       +++    P VV YN++I   GK   +E+    F
Sbjct: 962  DLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLF 1021

Query: 350  KKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +MK  RG+ P+  TY SL+     AG++ +   I  +++ + +  +   FN +I  Y  
Sbjct: 1022 NEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1081

Query: 409  AGDVEKMGELFLTMKERHCVPDNITF 434
            +G  E    ++ TM      P+  T+
Sbjct: 1082 SGKPEHAYAVYQTMVTGGFSPNTGTY 1107



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 156/328 (47%), Gaps = 3/328 (0%)

Query: 133  ASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            A +LFE    D G++P +  Y  L+    ++ +++ A      +K+ + C PDV TY+ L
Sbjct: 770  ARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKN-TGCIPDVATYNFL 828

Query: 192  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
            + +  K  + D + +I  EMS    E + +T+N +I G  KA   ++    +  ++    
Sbjct: 829  LDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 888

Query: 252  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              P   T   +I     SG + + ++ +   +  G + +    NIL   +G+AG  D   
Sbjct: 889  FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAAC 948

Query: 312  SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++   M K    P + TY+++++     G +++   YF+++K  G+ P+ + Y  +++  
Sbjct: 949  ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGL 1008

Query: 372  SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K   + +   +  +++ S  I  D   +N +I   G AG VE+ G+++  ++     P+
Sbjct: 1009 GKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPN 1068

Query: 431  NITFATMIQAYNALGMTEAAQNLENKMI 458
              TF  +I+ Y+  G  E A  +   M+
Sbjct: 1069 VFTFNALIRGYSLSGKPEHAYAVYQTMV 1096



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 1/241 (0%)

Query: 89   IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
            +K      AL ++  L   + +     T+  L+  L K  +  +A  LFE M   G +P+
Sbjct: 868  VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPN 927

Query: 149  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              +Y  L++ +G++G  D A +    M      +PD+ TYS+L+       R D      
Sbjct: 928  CAIYNILINGFGKAGEADAACALFKRMVK-EGVRPDLKTYSVLVDCLCMVGRVDEGLHYF 986

Query: 209  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             E+   G+    V YN II+G GK  + EE    F+ M +S G  PD++T NS+I   G 
Sbjct: 987  RELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGI 1046

Query: 269  SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            +G +E+  K YNE    G++ ++ T N L + Y  +G  +   +V   M    F P   T
Sbjct: 1047 AGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGT 1106

Query: 329  Y 329
            Y
Sbjct: 1107 Y 1107



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 169/413 (40%), Gaps = 74/413 (17%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K  +  +A  +F  +   GL P    Y  ++  Y + G +DEA   +++M   + C+P
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVE-NCCEP 538

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV   + LI +  K  R D   K+   M  + ++ + VTYNT++ G GK  K +E    F
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 598

Query: 244 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 269
             MV+ G                                  GC PD+FT N++I     +
Sbjct: 599 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 658

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-DKMRSVMDFMQKRFFFPTVVT 328
           G +++   ++++   + V  D  TL  L     +AG+  D  + + +F+      P  + 
Sbjct: 659 GQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLF 717

Query: 329 YNIVIETFGKAGHIEKMEEYFKKM---------------------KHR------------ 355
           +  ++ +      I+    + +++                     KH             
Sbjct: 718 WEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKF 777

Query: 356 ----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
               G++P   TY  L+    +A +I     +  QV+N+  I D   +N ++ AYG++G 
Sbjct: 778 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGK 837

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++++ E++  M    C P+ IT   +I      G  + A +L   +++ ++ S
Sbjct: 838 IDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 890



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 150/364 (41%), Gaps = 42/364 (11%)

Query: 42   GIQKEAEKDLSKILRTEFAIKNIE--KKVSSKKYKNLWPKPVLEALDEAI----KQKKWQ 95
            GI ++ +  L  I+R  F   N    + +  K  K+L  +P L   +  I    +    +
Sbjct: 745  GICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIE 804

Query: 96   LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
            +A  +F L  +         T+  L+   GK  + ++   +++ M +   +P+   +  +
Sbjct: 805  IAQDVF-LQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIV 863

Query: 156  VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
            +S   ++G +D+A     D+ S  D  P   TY  LI   +K  R    +++   MS  G
Sbjct: 864  ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYG 923

Query: 216  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------------- 250
               +   YN +I+G+GKA + +   + F  MV+ G                         
Sbjct: 924  CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGL 983

Query: 251  ---------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-LMGVKADIQTLNILTKS 300
                     G +PD+   N +I+  G    +E+    +NE     G+  D+ T N L  +
Sbjct: 984  HYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILN 1043

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             G AGM ++   + + +Q+    P V T+N +I  +  +G  E     ++ M   G  PN
Sbjct: 1044 LGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1103

Query: 361  SITY 364
            + TY
Sbjct: 1104 TGTY 1107



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 3/225 (1%)

Query: 236 FEEMESSFSAMVESGGCHPDIFT---LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F + +SSFS      G    + T    N M+ A    G IE+M   ++      +K D  
Sbjct: 97  FPDTDSSFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTN 156

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   + K     G   +    +  M++  F     +YN +I    K+    +  E +++M
Sbjct: 157 TYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM 216

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G +P+  TY SL+    K   I  V  +L+++E   +  +   F   I   G+AG +
Sbjct: 217 ILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKI 276

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +  E+   M +  C PD +T+  +I A       + A+ +  KM
Sbjct: 277 NEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKM 321


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 159/316 (50%), Gaps = 5/316 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 202
           G  PSV  Y A++ A   + L   A    + M S     P+VYTY+ILI++ C + HR +
Sbjct: 111 GYVPSVLAYNAVLLALSDASL-TSARRFFDSMLS-DGVAPNVYTYNILIRALCGRGHRKE 168

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            +  IL +M   G   + VTYNT++  + +A + +  E     M++ GG  P++ T NSM
Sbjct: 169 ALS-ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLD-GGLKPNLVTFNSM 226

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++    +G +E   K ++E    G+  D  + N L   Y +AG   +  SV   M ++  
Sbjct: 227 VNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 286

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVT+  +I    KAG++E      ++M+ RG++ N +T+ +L+  + K G +     
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 346

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            +R +    +      +N +I+ Y   G +++  EL   M+ +   PD +T++T+I AY 
Sbjct: 347 AVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 406

Query: 443 ALGMTEAAQNLENKMI 458
               T +A  L  +M+
Sbjct: 407 KNCDTHSAFELNQQML 422



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 154/307 (50%), Gaps = 2/307 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A   F+ MLSDG+ P+V  Y  L+ A    G   EA S + DM+  + C P+V TY+ L+
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRG-AGCGPNVVTYNTLV 192

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +  +    D  E+++  M   G++ + VT+N++++G  KA K E+    F  M+  G  
Sbjct: 193 AAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG-L 251

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PD  + N+++  Y  +G   +    + E    G+  D+ T   L     +AG  +   +
Sbjct: 252 APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVT 311

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  M++R      VT+  +I+ F K G ++      + M+   +KP+ + Y +L++ Y 
Sbjct: 312 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYC 371

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
             G + +   +L ++E   +  D   ++ IISAY +  D     EL   M E+  +PD I
Sbjct: 372 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 431

Query: 433 TFATMIQ 439
           T++++I+
Sbjct: 432 TYSSLIR 438



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 163/390 (41%), Gaps = 29/390 (7%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +  Q+       TFT L+ ++ K    E A  L   M   GL+ +   +TAL+
Sbjct: 274 ALSVFAEM-TQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALI 332

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             + + G LD+A   +  M+     KP V  Y+ LI       R D   ++L EM   G+
Sbjct: 333 DGFCKKGFLDDALLAVRGMRQCR-IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 391

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           +   VTY+TII  Y K             M+E G   PD  T +S+I        +    
Sbjct: 392 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG-VLPDAITYSSLIRVLCEEKRLSDAH 450

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             +     +G++ D  T   L   + + G  ++  S+ D M K    P VVTY+++I   
Sbjct: 451 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA---------------GLIMKVD 381
            K+    + ++   K+ H    P +  Y +L+    KA               GL+ + D
Sbjct: 511 SKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEAD 570

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + + + + +  LD   ++ +I  + +AG+V K       M +R   P++ +  ++I+  
Sbjct: 571 KVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGL 630

Query: 442 NALGMTEAAQNLENKMIAMKENSGKKLIQC 471
                       EN M+   +   ++L+ C
Sbjct: 631 -----------FENGMVVEADQVIQQLLNC 649



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 145/326 (44%), Gaps = 6/326 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  + K  + E A  +F+ M+ +GL P    Y  LV  Y ++G   EA S   +M
Sbjct: 222 TFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEM 281

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV T++ LI    K    +    ++ +M   G++ + VT+  +IDG+ K   
Sbjct: 282 TQ-KGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGF 340

Query: 236 FEEMESSFSAMVESGGCH--PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            ++   +   M +   C   P +   N++I+ Y   G +++  +  +E    G+K D+ T
Sbjct: 341 LDDALLAVRGMRQ---CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 397

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + +  +Y +         +   M ++   P  +TY+ +I    +   +      FK M 
Sbjct: 398 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMI 457

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++P+  TY SL+  + K G + +  S+  ++  + V+ D   ++ +I+   ++    
Sbjct: 458 KLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAM 517

Query: 414 KMGELFLTMKERHCVPDNITFATMIQ 439
           +  +L   +     +P N  +  ++ 
Sbjct: 518 EAQQLLFKLYHEEPIPANTKYDALMH 543



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 66/385 (17%)

Query: 103 LLRQ--QQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           L+RQ  ++  Q    TFT L+   G CK+   + A L    M    +KPSV  Y AL++ 
Sbjct: 312 LVRQMRERGLQMNEVTFTALID--GFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALING 369

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI----KSCTKFHRFDLIEKILAEMSYL 214
           Y   G +DEA   +++M++    KPDV TYS +I    K+C     F+L +++L +    
Sbjct: 370 YCMVGRMDEARELLHEMEA-KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK---- 424

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+   A+TY+++I    + K+  +    F  M++ G   PD FT  S+I  +   GN+E+
Sbjct: 425 GVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLG-LQPDEFTYTSLIDGHCKEGNVER 483

Query: 275 MEKWYNEFNLMGVKADIQTLNILT------------------------------------ 298
               +++    GV  D+ T ++L                                     
Sbjct: 484 ALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMH 543

Query: 299 --------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                         K +   G+ ++   V   M  R +      Y+++I    +AG++ K
Sbjct: 544 CCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMK 603

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
              + K+M  RG  PNS +  SL+    + G++++ D +++Q+ N   + D      +I 
Sbjct: 604 ALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALID 663

Query: 405 AYGQAGDVEKMGELFLTMKERHCVP 429
                G+V+ + ++   M +   +P
Sbjct: 664 LNLNEGNVDAVLDVLHGMAKDGLLP 688


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + M+  GL+P   +   ++   G++ ++DEA      MKS+  C  D YTY+ILI+S 
Sbjct: 71  LLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMG-CPADDYTYAILIRSL 129

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  R +    +  EM   G   SA  Y  +ID Y KA + E        M++     PD
Sbjct: 130 GRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKN-LAPD 188

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
            +TLNS+I+A   +G  E   + +      GV  +  + N +    G+AG        MD
Sbjct: 189 DYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMD 248

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R   P  +T+N +I   G+A +  +  +  ++M+  G+ P+  TY  ++ A++KAG
Sbjct: 249 EMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG 308

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + K   +   +E +    +   +N +I A  +AG  +   +++  MK++  +PD IT A
Sbjct: 309 NMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT-A 367

Query: 436 TMIQ 439
           T++Q
Sbjct: 368 TVLQ 371



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 2/248 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  LG+CK+ E+A+LLF+ M   G  PS   YT ++  Y ++G ++ A   +  M
Sbjct: 121 TYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKM 180

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +  PD YT + LI + ++  R +L  +I   M   G+  + V++N ++D  GKA K
Sbjct: 181 LD-KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGK 239

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              +   F   +E+ G  P+  T N++I+  G +    +  K   E    G+  D+ T  
Sbjct: 240 VG-LAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYT 298

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + +++ +AG   K   +   M+K      VVTYN++I+   KAG  +   + +  MK +
Sbjct: 299 CMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKK 358

Query: 356 GMKPNSIT 363
           G+ P++IT
Sbjct: 359 GILPDAIT 366



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 130/302 (43%), Gaps = 40/302 (13%)

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V V  A+++AYG+S  + +      ++      KP+ YTY  +I+S  K     L  ++L
Sbjct: 14  VLVSNAVIAAYGRSSRIHKVMDEFQELDKHGS-KPNAYTYKCVIQSLVKAGNVVLAMELL 72

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M   G+E                                    PD    N ++   G 
Sbjct: 73  DKMIKTGLE------------------------------------PDTLLCNVVLDGLGK 96

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  +++  K +     MG  AD  T  IL +S GR    ++   + D M++R   P+   
Sbjct: 97  ANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPA 156

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  VI+ + KAG IE      KKM  + + P+  T  SL++A S+ G       I  +++
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            S V ++T  FN ++   G+AG V    +    M+ R   P++ITF T+I   N LG  +
Sbjct: 217 KSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLI---NCLGRAK 273

Query: 449 AA 450
            A
Sbjct: 274 YA 275



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           N +I  YG++ +  ++   F  + +  G  P+ +T   +I +   +GN+    +  ++  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQEL-DKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMI 76

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D    N++    G+A M D+   +   M+         TY I+I + G+    E
Sbjct: 77  KTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDE 136

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +    F +M+ RG  P++  Y +++  Y KAG I     +L+++ + ++  D    N +I
Sbjct: 137 EATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA--MK 461
           +A  + G  E   E+F  MK+     + ++F  M+      G    A    ++M A  +K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 462 ENS 464
            NS
Sbjct: 257 PNS 259



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 4/231 (1%)

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
           A ++   C   +   N++I+AYG S  I K+   + E +  G K +  T   + +S  +A
Sbjct: 3   AAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKA 62

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G       ++D M K    P  +  N+V++  GKA  +++  + F  MK  G   +  TY
Sbjct: 63  GNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTY 122

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             L+ +  +     +   +  ++E        P +  +I  Y +AG +E    +   M +
Sbjct: 123 AILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLD 182

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 471
           ++  PD+ T  ++I A +  G TE A  +  +M    +A+   S   ++ C
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDC 233


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 168/361 (46%), Gaps = 3/361 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+  +A  L + M+  G KP  
Sbjct: 128 RRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDT 186

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L+          EA + I+ M +   C+PD++TY  ++    K    DL   +L 
Sbjct: 187 VTFNTLIHGLFLHNKASEAVALIDRMVA-RGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 245

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    IE + V YNTIIDG  K K  ++    F+ M E+ G  PD+FT NS+IS   N 
Sbjct: 246 KMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM-ETKGIKPDVFTYNSLISCLCNY 304

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +  ++     +  ++ T N L  ++ + G   +   + D M +R   P +VTY
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 364

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I  F     +++ ++ F  M  +   P+ +TY +L+  + KA  + +   + R++  
Sbjct: 365 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQ 424

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             ++ +T  +N +I    QAGD +   ++F  M      PD IT++ ++      G  E 
Sbjct: 425 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEK 484

Query: 450 A 450
           A
Sbjct: 485 A 485



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 157/324 (48%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    +   AS L   M+   + P+V  + +L+ A+ + G L EA    ++M
Sbjct: 293 TYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 352

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   P++ TY+ LI       R D  ++I   M         VTYNT+I G+ KAK+
Sbjct: 353 IQRS-IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE    F  M + G    +  T N++I     +G+ +  +K + +    GV  DI T +
Sbjct: 412 VEEGMELFREMSQRG-LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 470

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     + G  +K   V +++QK    P + TYNI+IE   KAG +E   + F  +  +
Sbjct: 471 ILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN I Y +++S + + GL  + D++ R+++    + D+  +N +I A  + GD    
Sbjct: 531 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAAS 590

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
            EL   M+    V D  T + +I 
Sbjct: 591 AELIKEMRSCGFVGDASTISMVIN 614



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 6/348 (1%)

Query: 114 CQ--TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           CQ   FT   V+ G CK+ +   A  L + M    ++ +V +Y  ++    +   +D+AF
Sbjct: 217 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
              N M++    KPDV+TY+ LI     + R+    ++L++M    I  + VT+N++ID 
Sbjct: 277 DLFNKMET-KGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDA 335

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K  K  E E  F  M++     P+I T NS+I+ +     +++ ++ +          
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRS-IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 394

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+ T N L K + +A   ++   +   M +R      VTYN +I+   +AG  +  ++ F
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 454

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           KKM   G+ P+ ITY  L+    K G + K   +   ++ S +  +   +N +I    +A
Sbjct: 455 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKA 514

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G VE   +LF ++  +   P+ I + TMI  +   G+ E A  L  +M
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 562



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 175/368 (47%), Gaps = 3/368 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+    LAL +   + + +  +A    +  ++  L K K  + A  LF  M + G+KP V
Sbjct: 233 KRGDIDLALSLLKKMEKGK-IEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDV 291

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +L+S     G   +A   ++DM       P+V T++ LI +  K  +    EK+  
Sbjct: 292 FTYNSLISCLCNYGRWSDASRLLSDMIE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 350

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM    I+ + VTYN++I+G+    + +E +  F+ MV S  C PD+ T N++I  +  +
Sbjct: 351 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV-SKDCLPDVVTYNTLIKGFCKA 409

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +E+  + + E +  G+  +  T N L +   +AG  D  + +   M      P ++TY
Sbjct: 410 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 469

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           +I+++   K G +EK    F+ ++   M+PN  TY  ++    KAG +     +   +  
Sbjct: 470 SILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  +   +  +IS + + G  E+   LF  MKE   +PD+  + T+I+A    G   A
Sbjct: 530 KGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAA 589

Query: 450 AQNLENKM 457
           +  L  +M
Sbjct: 590 SAELIKEM 597



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 167/398 (41%), Gaps = 70/398 (17%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     + YTYSI
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-IPHNHYTYSI 121

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+    +  +  L   +L +M  LG E   VT +++++GY   K+  E  +    MVE G
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 251 ----------------------------------GCHPDIFTLNSMISAYGNSGNIE--- 273
                                             GC PD+FT  ++++     G+I+   
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 274 ----KMEK----------------------------WYNEFNLMGVKADIQTLNILTKSY 301
               KMEK                             +N+    G+K D+ T N L    
Sbjct: 242 SLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCL 301

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              G +     ++  M +R   P VVT+N +I+ F K G + + E+ F +M  R + PN 
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 361

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY SL++ +     + +   I   + + D + D   +N +I  + +A  VE+  ELF  
Sbjct: 362 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M +R  V + +T+ T+IQ     G  + AQ +  KM++
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 459



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 129/333 (38%), Gaps = 71/333 (21%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    K  +  +A  LF+ M+   + P++  Y +L++ +     LDEA      M
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S  DC PDV TY+ LIK   K  R +   ++  EMS  G+  + VTYNT+I G  +A  
Sbjct: 388 VS-KDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            +  +  F  MV  G                                     P+I+T N 
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNI 506

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MI     +G +E     +   +L GVK                                 
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVK--------------------------------- 533

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P V+ Y  +I  F + G  E+ +  F++MK  G  P+S  Y +L+ A  + G      
Sbjct: 534 --PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 591

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            +++++ +   + D    + +I+     G +EK
Sbjct: 592 ELIKEMRSCGFVGDASTISMVINML-HDGRLEK 623



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 130/319 (40%), Gaps = 39/319 (12%)

Query: 146 KPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           K S D Y   +S  G S L LD+A +   +M   S   P +  +S L+ +  K ++FD++
Sbjct: 43  KTSYD-YREKLSRNGLSELKLDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVV 100

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  +M  LGI  +  TY+ +++ + +  +     +    M++                
Sbjct: 101 ISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMK---------------- 144

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                               +G + DI TL+ L   Y       +  +++D M +  + P
Sbjct: 145 --------------------LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKP 184

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VT+N +I          +      +M  RG +P+  TY ++V+   K G I    S+L
Sbjct: 185 DTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 244

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           +++E   +  +   +N II    +   ++   +LF  M+ +   PD  T+ ++I      
Sbjct: 245 KKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNY 304

Query: 445 GMTEAAQNLENKMIAMKEN 463
           G    A  L + MI  K N
Sbjct: 305 GRWSDASRLLSDMIERKIN 323


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 209/454 (46%), Gaps = 66/454 (14%)

Query: 50  DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW 109
           D  ++L T  A ++I+  V S  Y  L     LE L    K ++W  A +   L+R    
Sbjct: 28  DCERLLET-MAARDIQPNVVS--YNGL-----LEGL---CKLERWHEAEE---LVRDMIS 73

Query: 110 YQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
              R      T++ L+    K  + E++  L + ++S GL+P   +YT +V++  +S  L
Sbjct: 74  RGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARL 133

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA   + +M   + C P + T++ LI  C +    ++ + +L +M+  G++   VTYNT
Sbjct: 134 GEALELLEEMIR-AGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNT 192

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEKW 278
           ++DG  KA + +E E     M ++ GC PD+   +S +     SG +       E+M   
Sbjct: 193 LMDGLCKAGRLQEAEQLLERM-KASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDS 251

Query: 279 YNEFNLM-----------------------------GVKADIQTLNILTKSYGRAGMYDK 309
           +++ N++                             G   ++   + +     + G   +
Sbjct: 252 HHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQE 311

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
            RSVM+ M +    P VVTY+ ++    KAG IE+  E  ++M   G KPN++TYCSLV 
Sbjct: 312 ARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVH 371

Query: 370 AYSKAGLIMKVDSILRQVENSDVIL-----DTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
                G + + + ++ ++ +              +N +I    +AG ++   + F  M+ 
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + C PD ++++T+++     G+  + + L+ +MI
Sbjct: 432 QGCDPDGVSYSTIVE-----GLARSGRALQAEMI 460



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 8/278 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM  L K  + ++A  L E M + G  P V  Y++ V    +SG + +A   +  M
Sbjct: 189 TYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQM 248

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAK 234
           +  S   P+V TY+ ++    K  + D   +++ +M S  G   + V Y+T++DG  K  
Sbjct: 249 RD-SHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E  S   AM  +G C PD+ T +S+++    +G IE+  +   E  + G K +  T 
Sbjct: 308 RTQEARSVMEAMARAG-CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 295 NILTK---SYGRAGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYF 349
             L     S GR    ++M   M           P+V TYN +I    KAG I+   ++F
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFF 426

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           ++M+ +G  P+ ++Y ++V   +++G  ++ + IL +V
Sbjct: 427 QRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 148/337 (43%), Gaps = 3/337 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    K  +P     L E M +  ++P+V  Y  L+    +     EA   + DM
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 176 KSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            S      PD+ TYS L+    K  + +   ++L E+   G+   A+ Y  ++    K+ 
Sbjct: 72  ISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSA 131

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E       M+ +G C P + T N++IS      N+E  +    +    GVKAD+ T 
Sbjct: 132 RLGEALELLEEMIRAG-CCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTY 190

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +AG   +   +++ M+     P VV Y+  +    K+G +    +  ++M+ 
Sbjct: 191 NTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRD 250

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVE 413
               PN +TY +++    K+G I     ++ Q+ +SD   L+   ++ ++    + G  +
Sbjct: 251 SHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQ 310

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +   +   M    C PD +T+++++      G  E A
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 137/280 (48%), Gaps = 1/280 (0%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           + C P+  T++ L+   +K  R    E++L  M+   I+ + V+YN +++G  K +++ E
Sbjct: 4   TGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHE 63

Query: 239 MESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
            E     M+  GG   PD+ T ++++S Y  +G +E+  +   E    G++ D      +
Sbjct: 64  AEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKV 123

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             S  ++    +   +++ M +    PT++T+N +I    +  ++E  +   +KM   G+
Sbjct: 124 VASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGV 183

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           K + +TY +L+    KAG + + + +L +++ S    D   ++  +    ++G V    +
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQ 243

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +   M++ H  P+ +T+ T++      G  + A  +  +M
Sbjct: 244 VLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G  PNS+T+ +LV+ +SK G     + +L  +   D+  +   +N ++    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 412 VEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             +  EL   M  R     PD +T++T++  Y   G  E ++ L  ++I+
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVIS 110


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  +M  L K  + E+A LLF  M   G  P+   +  ++    Q   +D+A    ++M
Sbjct: 117 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++  D  PD ++Y ILI    K  + +   K+   M   GI  SAVTYN +I G   A  
Sbjct: 177 EA-KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    F +M  S GC P  FT N +I A+   G +++  +        G   D+ T +
Sbjct: 236 LDEALELFKSM-RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYS 294

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L          D  R +++ M KR   PTVVT N +I    KAG I++  E    M   
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+ +TY +LV  + +AG   +   +L  +    +  +   +  ++S   +A  + + 
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  MK   C P+  T+  +I  + + G  +    L  +M+
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 10/348 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L K  +   A  LF+ +L  G+ PS   YT+L+     +   D+A     DM
Sbjct: 12  SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                C P   TY+++I +  K        DLI+K++ +    G     VTYNT++DG  
Sbjct: 72  NR-RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED----GHVPDVVTYNTVMDGLC 126

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K+ + EE    F+ M E  GC P+  + N++I        I++  + ++E     +  D 
Sbjct: 127 KSSRVEEALLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDS 185

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            +  IL     +AG  ++   +   M      P+ VTYN+VI     A  +++  E FK 
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ +G +P+  T+  L+ A+ K G + +   +L+++ +   + D   ++ +IS       
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           V+    L   M +R C P  +T  T+I      G  + A+ + + M++
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 2/260 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  LF+ M S G +PS   +  L+ A+ + G LDEAF  +  M       PDV TYS 
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV-PDVVTYST 295

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI       R D    +L +M     + + VT NT+I G  KA + +E      AMV SG
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD+ T N+++  +  +G  E+  +  ++    G+  ++ T   L     +A    + 
Sbjct: 356 Q-SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V   M+     P + TY  +I  F  AG ++   + F +M   G+ P+ + Y +L + 
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAE 474

Query: 371 YSKAGLIMKVDSILRQVENS 390
             K+G   +   ILR+   S
Sbjct: 475 LCKSGRSARALEILREGRES 494



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD ++Y ILI    K  + +    +  ++ + G+  S V Y ++I G   A  F++    
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+ M    GC P   T N MI A    G +E+      +    G   D+ T N +     
Sbjct: 68  FADMNRR-GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 126

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++   ++   + + M++    P   ++N +I    +   I++  + F +M+ + + P+S 
Sbjct: 127 KSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSW 186

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y  L+   +KAG + +   + +++ +S +      +N +I     A  +++  ELF +M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + + C P   TF  +I A+   G  + A  L  +M
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRM 281



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 8/276 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L    + + A  L E M+    KP+V     L+    ++G + EA   ++ M
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S S   PDV TY+ L+    +  + +   ++L++M   G+  + VTY  ++ G  KA +
Sbjct: 352 VS-SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 410

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F+ M +S GC P++FT  ++I  + ++G ++   K + E    G+  D     
Sbjct: 411 LPEACGVFAQM-KSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYG 469

Query: 296 ILTKSYGRAGMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            L     ++G   +    +R   + ++   +   V  Y   ++   +AG +E    + + 
Sbjct: 470 TLAAELCKSGRSARALEILREGRESLRSEAWGDEV--YRFAVDGLLEAGKMEMALGFVRD 527

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           M   G  P      SLV+   K+G   +  ++L ++
Sbjct: 528 MVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 85/205 (41%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD ++   +I     +G +      + +    GV         L      A  +D  R +
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              M +R   P+ VTYN++I+   K G +E+  +  KKM   G  P+ +TY +++    K
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +  + +   +  ++E      +    N II    Q   +++  ++F  M+ +   PD+ +
Sbjct: 128 SSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS 187

Query: 434 FATMIQAYNALGMTEAAQNLENKMI 458
           +  +I      G    A  L  +M+
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRML 212



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           NE N   V  D  +  IL     +AG  +  R++   +      P+ V Y  +I     A
Sbjct: 2   NERN---VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 58

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
              +   E F  M  RG  P+ +TY  ++ A  K G++ +   +++++     + D   +
Sbjct: 59  NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 118

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           N ++    ++  VE+   LF  M+   C P+  +  T+I
Sbjct: 119 NTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 157



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 56/142 (39%), Gaps = 35/142 (24%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M +R   P   +Y I+I+   KAG +      F+K+ H G+ P+++ Y SL+      GL
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIH-----GL 55

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
            M                              A   +   ELF  M  R C P  +T+  
Sbjct: 56  CM------------------------------ANSFDDARELFADMNRRGCPPSPVTYNV 85

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           MI A    GM E A +L  KMI
Sbjct: 86  MIDASCKRGMLEEACDLIKKMI 107


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 169/350 (48%), Gaps = 8/350 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV LGK +  E   +L + M   GL+P+V  +T  +   G++G +DEA+     
Sbjct: 228 KTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRR 287

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID---GYG 231
           M     C PD+ TY++LI +     + +  +++  +M   G +   V Y T++D    +G
Sbjct: 288 MDD-EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFG 346

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
               F+E    F + +E+ G  PD+ T   ++     + + ++    ++     G+  ++
Sbjct: 347 DLDTFKE----FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L     RAG  +    ++  M+     PT  TYNI I+ FGK+G   K  E F+K
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEK 462

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK +G+ PN +   + + + ++ G + +  ++   +  + +  D+  +N ++  Y + G 
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           V++   L   M    C PD I   ++I +    G  + A  + ++M  MK
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 2/299 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M +DG  P V  +T LV    ++   DEAF+T + M+      P+++TY+ LI    +  
Sbjct: 358 MEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK-QGILPNLHTYNTLICGLLRAG 416

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +   K+L  M  +G++ +A TYN  ID +GK+ +  +   +F  M ++ G  P+I   
Sbjct: 417 RIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKM-KAKGIVPNIVAC 475

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+ + +    G + + +  +N     G+  D  T N++ K Y + G  D+  +++  M +
Sbjct: 476 NASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR 535

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P V+  N +I++  KAG +++  + F +MK   + P  +TY +L+S   K G + K
Sbjct: 536 NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQK 595

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
              +   +       +T  FN ++  + +  +VE   ++F  M    C PD +T+ T+I
Sbjct: 596 AIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 176/396 (44%), Gaps = 12/396 (3%)

Query: 42   GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIF 101
            G   EAE D + I   E  +  I ++ S       +  P++  L    K K+   A +IF
Sbjct: 726  GTLVEAEMDKAIIFAEELVLNGICREDS-------FLIPLVRVL---CKHKRELYAYQIF 775

Query: 102  GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
                ++        ++  L+  L +    E+A  LF+ M + G  P    +  L++ +G+
Sbjct: 776  DKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGK 835

Query: 162  SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
            SG + E F    +M S   CKPD  TY+I+I S  K +  D       ++       +  
Sbjct: 836  SGKITELFELYKEMIS-RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 222  TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            TY  +IDG  K  + EE    F  M + G C P+    N +I+ YG  G+ E   + +  
Sbjct: 895  TYGPLIDGLAKVGRLEEAMRLFEEMSDYG-CKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 282  FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
                G++ D+++  IL      AG  D+     + ++     P  + YN +I   GK+  
Sbjct: 954  MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQR 1013

Query: 342  IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            +E+    + +M++RG+ P+  TY SL+     AG++ +   +  +++ + +  D   +N 
Sbjct: 1014 MEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNA 1073

Query: 402  IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +I  Y  + + E    ++  M    C P+  T+A +
Sbjct: 1074 LIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 145/342 (42%), Gaps = 37/342 (10%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+    QSG   EA      M S    KP + TYS L+ +  K    +++  +L EM
Sbjct: 195 YNGLIHLLIQSGFCGEALEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             LG+  +  T+   I   G+A K +E    F  M +  GC PD+ T   +I A  N+G 
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +E  ++ + +    G K D      L   +   G  D  +     M+   + P VVT+ I
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +++   KA   ++    F  M+ +G+ PN  TY +L+    +AG I     +L  +E+  
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV----------------------- 428
           V      +N  I  +G++G+  K  E F  MK +  V                       
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 429 ------------PDNITFATMIQAYNALGMTEAAQNLENKMI 458
                       PD++T+  M++ Y+ +G  + A NL ++MI
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 138/299 (46%), Gaps = 2/299 (0%)

Query: 144  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            G+ P++  Y  L+    +    ++A+    DMK+V  C PD +T+++L+    K  +   
Sbjct: 783  GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG-CAPDAFTFNMLLAVHGKSGKITE 841

Query: 204  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            + ++  EM     +  A+TYN +I    K+   ++    F  +V S    P   T   +I
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSD-FRPTPRTYGPLI 900

Query: 264  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                  G +E+  + + E +  G K +    NIL   YG+ G  +    +   M      
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR 960

Query: 324  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            P + +Y I+++    AG +++   YF ++K  G+ P+ I Y  +++   K+  + +  ++
Sbjct: 961  PDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALAL 1020

Query: 384  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++ N  ++ D   +N ++   G AG VE+   ++  ++     PD  T+  +I+ Y+
Sbjct: 1021 YNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYS 1079



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 154/364 (42%), Gaps = 73/364 (20%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y     TFT L+ +L K +  ++A   F+VM   G+ P++  Y  L+    ++G +++A 
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 170 STINDMKSVSDCKPDVYTYSILI----KSCTKFHRFDLIEKI------------------ 207
             +  M+SV   +P  YTY+I I    KS       +  EK+                  
Sbjct: 423 KLLGTMESVG-VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 208 LAEMSYL-------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           LAEM  L             G+   +VTYN ++  Y K  + +E  +  S M+ +G C P
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEP 540

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+  +NS+I +   +G ++  E W                           M+D+M+ + 
Sbjct: 541 DVIVVNSLIDSLYKAGRVD--EAWQ--------------------------MFDRMKDMK 572

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
                    PTVVTYN ++   GK G ++K  E F+ M  +   PN+I++ +L+  + K 
Sbjct: 573 -------LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKN 625

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
             +     +  ++   D   D   +N +I    +   V      F  +K +   PD++T 
Sbjct: 626 DEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTI 684

Query: 435 ATMI 438
            T++
Sbjct: 685 CTLL 688



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 183  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            P + +Y+ LI    + H  +    +  +M  +G    A T+N ++  +GK+ K  E+   
Sbjct: 786  PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 243  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
            +  M+ S  C PD  T N +IS+   S N++K   ++ +      +   +T   L     
Sbjct: 846  YKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLA 904

Query: 303  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            + G  ++   + + M      P    +NI+I  +GK G  E   + FK+M + G++P+  
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 363  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +Y  LV     AG + +      +++++ +  D   +N II+  G++  +E+   L+  M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 423  KERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            + R  VPD  T+ +++      GM E A+ +
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 123/276 (44%), Gaps = 1/276 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           + D+ TY  + K+ +       +  +L +M   G   +A +YN +I    ++    E   
Sbjct: 154 RRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALE 213

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            +  MV S G  P + T ++++ A G   + E +     E   +G++ ++ T  I  +  
Sbjct: 214 VYRRMV-SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           GRAG  D+   +   M      P +VTY ++I+    AG +E  +E F KMK  G KP+ 
Sbjct: 273 GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ 332

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           + Y +L+  ++  G +        Q+E    + D   F  ++    +A D ++    F  
Sbjct: 333 VIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDV 392

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M+++  +P+  T+ T+I      G  E A  L   M
Sbjct: 393 MRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTM 428



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 155/375 (41%), Gaps = 21/375 (5%)

Query: 100  IFGLLRQQQ-----WYQARCQ--------TFTKLMVMLGKCKQPEQA-SLLFEVMLSDGL 145
            I+GL+++ +     W+  + +        T   L+  L KC Q   A S+  + M     
Sbjct: 654  IYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRF 713

Query: 146  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT---YSILIKSCTKFHRFD 202
            + +   +  L+        +D+A     ++     C+ D +      +L K   + + + 
Sbjct: 714  RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQ 773

Query: 203  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            + +K   +   LGI  +  +YN +I    +    E+    F  M ++ GC PD FT N +
Sbjct: 774  IFDKFTKK---LGISPTLASYNCLIGELLEVHYTEKAWDLFKDM-KNVGCAPDAFTFNML 829

Query: 263  ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
            ++ +G SG I ++ + Y E      K D  T NI+  S  ++   DK       +    F
Sbjct: 830  LAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 323  FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
             PT  TY  +I+   K G +E+    F++M   G KPN   +  L++ Y K G       
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 383  ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            + +++ N  +  D   +  ++     AG V++    F  +K     PD I +  +I    
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 443  ALGMTEAAQNLENKM 457
                 E A  L N+M
Sbjct: 1010 KSQRMEEALALYNEM 1024



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N M+        +E M   +       ++ D+ T   + K+    G   +M +V++ M
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +K  F     +YN +I    ++G   +  E +++M   G+KP+  TY +L+ A  K    
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +L+++E+  +  +   F   I   G+AG +++  E+F  M +  C PD +T+  +
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 438 IQAYNALGMTEAAQNLENKMIAMKENSGK 466
           I A    G  E A+ L    + MK N  K
Sbjct: 304 IDALCNAGQLENAKEL---FVKMKANGHK 329



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 1/225 (0%)

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K E+M + F  M +      D+ T  ++  A    G + +M    N+    G   +  + 
Sbjct: 137 KVEDMAAVFEFM-QKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSY 195

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     ++G   +   V   M      P++ TY+ ++   GK    E +    K+M+ 
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMED 255

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G++PN  T+   +    +AG I +   I R++++     D   +  +I A   AG +E 
Sbjct: 256 LGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLEN 315

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             ELF+ MK     PD + + T++  +N  G  +  +   ++M A
Sbjct: 316 AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 5/351 (1%)

Query: 109  WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
            W  A        +  LG+  +     LL E+    G  P V  Y+ +++ Y + G LD+ 
Sbjct: 667  WNVASYNIVIHFVCQLGRINEAHHLLLLMEL---KGYTPDVISYSTVINGYCRFGELDKV 723

Query: 169  FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
            +  I  MK     KP+ YTY  +I    +  +    E+  +EM   GI    + Y T++D
Sbjct: 724  WKLIEKMKQ-KGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVD 782

Query: 229  GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            G+ K          F  M  S    PD+ T  ++IS +   G++ +  K ++E    G++
Sbjct: 783  GFCKRGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLE 841

Query: 289  ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
             DI T   L   Y +AG       V + M +    P VVTY  +I+   K G ++   E 
Sbjct: 842  PDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 901

Query: 349  FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +M   G++PN  TY S+V+   K+G I +   ++ + E + +  DT  +  ++ AY +
Sbjct: 902  LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 961

Query: 409  AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +G+++K  E+   M  +   P  +TF  ++  +   GM E  + L N M+A
Sbjct: 962  SGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 1012



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 173/387 (44%), Gaps = 44/387 (11%)

Query: 91   QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
             K W+L  K+     +Q+  +    T+  ++ +L +  +  +A   F  M+  G+ P   
Sbjct: 721  DKVWKLIEKM-----KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTI 775

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KIL 208
            VYT LV  + + G +  A     +M S  D  PDV TY+ +I    +    D++E  K+ 
Sbjct: 776  VYTTLVDGFCKRGDIRAASKFFYEMHS-RDITPDVLTYTAIISGFCQIG--DMVEAGKLF 832

Query: 209  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------ 250
             EM   G+E   +T+  +++GY KA   ++     + M+++G                  
Sbjct: 833  HEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 892

Query: 251  ----------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                            G  P+IFT NS+++    SGNIE+  K   EF   G+ AD  T 
Sbjct: 893  GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTY 952

Query: 295  NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
              L  +Y ++G  DK + ++  M  +   PT+VT+N+++  F   G +E  E+    M  
Sbjct: 953  TTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 1012

Query: 355  RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            +G+ PN+ T+  LV  Y     +    +I + + +  V  D   +  ++  +  A ++++
Sbjct: 1013 KGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKE 1072

Query: 415  MGELFLTMKERHCVPDNITFATMIQAY 441
               LF  MK +       T++ +I+ +
Sbjct: 1073 AWFLFQEMKGKGFSVSVSTYSVLIKGF 1099



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 152/319 (47%), Gaps = 2/319 (0%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T+T ++    +     +A  LF  ML  GL+P +  +T L++ Y ++G + +AF   N M
Sbjct: 811  TYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHM 870

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               + C P+V TY+ LI    K    D   ++L EM  +G++ +  TYN+I++G  K+  
Sbjct: 871  IQ-AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 929

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             EE         E+ G + D  T  +++ AY  SG ++K ++   E    G++  I T N
Sbjct: 930  IEE-AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFN 988

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +L   +   GM +    ++++M  +   P   T+N +++ +    +++     +K M  R
Sbjct: 989  VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSR 1048

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            G++P+  TY +LV  +  A  + +   + ++++     +    ++ +I  + +     + 
Sbjct: 1049 GVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEA 1108

Query: 416  GELFLTMKERHCVPDNITF 434
             E+F  M+      D   F
Sbjct: 1109 REIFDQMRRDGLAADKEIF 1127



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 2/285 (0%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            TFT+LM    K    + A  +   M+  G  P+V  YT L+    + G LD A   +++M
Sbjct: 846  TFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 905

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   +P+++TY+ ++    K    +   K++ E    G+    VTY T++D Y K+ +
Sbjct: 906  WKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 964

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             ++ +   + M+   G  P I T N +++ +   G +E  EK  N     G+  +  T N
Sbjct: 965  MDKAQEILTEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1023

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
             L K Y          ++   M  R   P   TY  +++    A ++++    F++MK +
Sbjct: 1024 CLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGK 1083

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            G   +  TY  L+  + K    ++   I  Q+    +  D   F+
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 90/174 (51%), Gaps = 1/174 (0%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + EF  +GV  ++ + NI+     + G  ++   ++  M+ + + P V++Y+ VI  + +
Sbjct: 657 FREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCR 716

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G ++K+ +  +KMK +G+KPNS TY S++    +   + + +    ++    ++ DT  
Sbjct: 717 FGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIV 776

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
           +  ++  + + GD+    + F  M  R   PD +T+  +I  +  +G M EA +
Sbjct: 777 YTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 830


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 173/350 (49%), Gaps = 9/350 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           TF  L+  L K  + E+A  +FE M  S    P+V  YT +++   + G LD A   + D
Sbjct: 102 TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL-D 160

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           + + + C P+V TYS+L++   K  R D    +L EM+  G +   + YNT+++G  K++
Sbjct: 161 LMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSR 220

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E       M+ SG C+P + T NS++  +  S  +++  +     +  G   D+   
Sbjct: 221 RLDEALELVQLMIRSG-CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINY 279

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE---KME---EY 348
           N +     R    D  ++++  M      P V+TY+ +I+   K   ++   K+E   E 
Sbjct: 280 NTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEI 339

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + MK  G  PN+ TY  ++    +A    +  ++LR++ +S+V+ D   F+ +I +  +
Sbjct: 340 LEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK 399

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + D++   ++F  M ER C P+ + +A +I   +  G  + A  +   M+
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV 449



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 167/367 (45%), Gaps = 21/367 (5%)

Query: 107 QQWYQARC--QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           Q + + RC    FT   ++ G CK  + +QA  L + M   G+ P V V+  ++    ++
Sbjct: 19  QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKA 78

Query: 163 GLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC- 218
           G   +A   F T+   K    C PD+ T++IL+ +  K  R +   +I   M +   +C 
Sbjct: 79  GRFGDALGYFKTVAGTK----CTPDIITFNILVDALVKSGRVEEAFQIFESM-HTSSQCL 133

Query: 219 -SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + VTY T+I+G  K  K +        M E+ GC P++ T + ++     +G  +K   
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNET-GCCPNVITYSVLVEGLCKAGRTDKGFT 192

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
              E    G + D+   N L     ++   D+   ++  M +   +PTVVTYN ++E F 
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           ++  +++     + M  RG  P+ I Y ++++   +   +    ++L+Q+  +  + D  
Sbjct: 253 RSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVI 312

Query: 398 FFNCIISAYGQAGDV------EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            ++ II    +   V      E   E+   MK+  C P+  T+A +I+       ++ A 
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 452 NLENKMI 458
            L  +MI
Sbjct: 373 ALLRRMI 379



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 2/282 (0%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C P+ +TY  LI    K  + D   ++L EM   GI      +N +I G  KA +F +  
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDAL 85

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 299
             F   V    C PDI T N ++ A   SG +E+  + +   +       ++ T   +  
Sbjct: 86  GYFKT-VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVIN 144

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              + G  D+   ++D M +    P V+TY++++E   KAG  +K     ++M  RG +P
Sbjct: 145 GLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQP 204

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + I Y +L++   K+  + +   +++ +  S        +N ++  + ++  V++   L 
Sbjct: 205 DVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLI 264

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             M ER C PD I + T+I         + AQ L  +M+A +
Sbjct: 265 QVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 151/320 (47%), Gaps = 8/320 (2%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           +L +  Q  QA  LF     +   P+   Y +L+    ++G LD+A+  +++M+      
Sbjct: 7   LLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD-RGIP 62

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEME 240
           P V  ++ +IK   K  RF   + +    +  G +C+   +T+N ++D   K+ + EE  
Sbjct: 63  PGVAVHNGVIKGLCKAGRFG--DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F +M  S  C P++ T  ++I+     G +++  +  +  N  G   ++ T ++L + 
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +AG  DK  +++  M +R F P V+ YN ++    K+  +++  E  + M   G  P 
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY SL+  + ++  + +   +++ +       D   +N +I+   +   ++    L  
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 421 TMKERHCVPDNITFATMIQA 440
            M    CVPD IT++T+I  
Sbjct: 301 QMVAARCVPDVITYSTIIDG 320



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 21/360 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K  + ++   L + M   G +P V +Y  L++   +S  LDEA   +  M
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S C P V TY+ L++   +  + D   +++  MS  G     + YNT+I G  +  +
Sbjct: 233 IR-SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR 291

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE---KMEKWYNEFNLM---GVKA 289
            ++ ++    MV +  C PD+ T +++I        ++   K+E       +M   G   
Sbjct: 292 LDDAQALLKQMV-AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPP 350

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +  T  ++ +   RA    +  +++  M      P + ++++VI +  K+  ++   + F
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR----QVENSDVILDTPFFNCIISA 405
             M  R  KPN + Y +L+   SK G   +VD  +R     VE+    + T  +N ++  
Sbjct: 411 GMMSERECKPNPVAYAALIDGLSKGG---EVDKAVRVFELMVESFRPGVAT--YNSVLDG 465

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMK 461
               G +E+   +   M  + C PD  ++  +I+    +   E A    Q +E K  AM+
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 13/262 (4%)

Query: 107 QQWYQARC--QTFTKLMVMLGKCK--------QPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +Q   ARC     T   ++ G CK        + E A  + E+M   G  P+   Y  ++
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               ++    +A + +  M   S+  PD+ ++S++I S  K H  D   KI   MS    
Sbjct: 360 EGLCRARKSQQALALLRRMID-SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V Y  +IDG  K  + ++    F  MVES    P + T NS++      G IE+  
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF--RPGVATYNSVLDGLCGVGRIEEAV 476

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +            D  +   L +   R    ++   +   ++ + F   V  YN+++   
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNEL 536

Query: 337 GKAGHIEKMEEYFKKMKHRGMK 358
            K   +        K+   G K
Sbjct: 537 CKKKRLSDAHGVANKLIEAGYK 558


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 1/352 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + KK +LAL +F   R +  Y     +F+ ++  LG+     +A  L   M + GL+P++
Sbjct: 201 RLKKIELALNLFEESRNRG-YGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNL 259

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y A++ A  +  L  E      +    + C PD  TY+ L+K+C    R+ L   +LA
Sbjct: 260 VTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLA 319

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM + GI     TYNT +D   K  + +    +    + +    P++ T +++++ Y  +
Sbjct: 320 EMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYSKA 379

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
              E     Y+E   + ++ D  + N L   Y   G +++       M+       VVTY
Sbjct: 380 ERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTY 439

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +IE +G+     ++ + F +MK R + PN +TY +L+  Y+K  +  +   + R+++ 
Sbjct: 440 NALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQ 499

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +  D  F++ +I A  + G +E    L   M E+   P+ +T+ ++I A+
Sbjct: 500 EGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAF 551



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 141/325 (43%), Gaps = 37/325 (11%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + ++  LG+ K+ E A  LFE   + G   +V  ++A++SA G++    EA S       
Sbjct: 193 SNMIRTLGRLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVS------- 245

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                                        +L  M   G+E + VTYN IID   K +   
Sbjct: 246 -----------------------------LLRSMGNFGLEPNLVTYNAIIDAGAKGELPF 276

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E+   F   + + GC PD  T NS++      G  +       E    G+  D+ T N  
Sbjct: 277 EIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTY 336

Query: 298 TKSYGRAGMYDKMRSVMDF-MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
             +  + G  D  R  +D  M  +   P VVTY+ ++  + KA   E     + +MKH  
Sbjct: 337 VDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLL 396

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           ++ + ++Y +LV  Y+  G   +     +++E   +  D   +N +I  YG+     ++ 
Sbjct: 397 IRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVR 456

Query: 417 ELFLTMKERHCVPDNITFATMIQAY 441
           +LF  MK R   P+++T++T+I+ Y
Sbjct: 457 KLFDEMKARRIYPNDLTYSTLIKIY 481



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G+  +  +   LF+ M +  + P+   Y+ L+  Y +  +  EA     ++
Sbjct: 438 TYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYREL 497

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     K DV  YS LI +  K    +   ++L  M+  G   + VTYN+IID +   ++
Sbjct: 498 KQ-EGMKTDVVFYSALIDALCKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFRIGQQ 556

Query: 236 FEEME----SSFSA 245
              +E    +SF A
Sbjct: 557 LPALECAVDTSFQA 570


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 2/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ LM  LG+  +  +AS + + M + G++P V  YT L     ++G   +A   ++ M
Sbjct: 257 TYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLM 316

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-GKAK 234
               + +P   TY++++    K  R D    ++  M   G +  AVTYNT++ G  G  K
Sbjct: 317 VQKGE-EPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGK 375

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             E M+     + E     PD+FT N++I      G +    + ++    MG++ +I T 
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L + Y  A    +   +  +  +  F P  +TY+++I    K   +      F KMK 
Sbjct: 436 NFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKD 495

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G++P  I Y +L+++  +   + +  S+ +++ N +  +D   FN II    +AGDV+ 
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKS 555

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             EL   M     VPD +TF+ +I  ++ LGM + A  L  KM++
Sbjct: 556 AKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVS 600



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 157/350 (44%), Gaps = 3/350 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K +Q +    ++  M+S  + P     +AL  ++  +     AFS ++ M        
Sbjct: 52  LRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK-RGFGV 110

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +VY  ++++K   +  + D    + ++M  +Y  +    VTYNT+++G+ KAK+  E   
Sbjct: 111 NVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARV 170

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F AM + G C P++ T + +I  Y  SG + +      E    G+KAD+   + L  ++
Sbjct: 171 LFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAF 230

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              G  +  R + D M +R   P VVTY+ +++  G+ G   +  E  K M  RG++P+ 
Sbjct: 231 CGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDV 290

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           + Y  L     K G       +L  +        T  +N +++   +   ++    +   
Sbjct: 291 VAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEM 350

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           M ++   PD +T+ T+++     G    A +L   +++ K +    +  C
Sbjct: 351 MVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTC 400



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 166/356 (46%), Gaps = 7/356 (1%)

Query: 86  DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSD 143
           D   K  +   A+K+  L+ Q+        T T  +V+ G CK+   + A  + E+M+  
Sbjct: 298 DGLCKNGRAGDAIKVLDLMVQKGEEPG---TLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFD 202
           G KP    Y  L+     +G + EA      + S     KPDV+T + LI+   K  R  
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVH 414

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              +I + M  +G++ + VTYN +I+GY  A+K  E    +   VESG   P+  T + M
Sbjct: 415 DAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESG-FSPNSMTYSVM 473

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I+       +      + +    G++  +   N L  S  R    ++ RS+   M+    
Sbjct: 474 INGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNH 533

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
              VV++NI+I+   KAG ++  +E   +M    + P+++T+  L++ +SK G++ +   
Sbjct: 534 NVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMG 593

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +  ++ +   +     F+ ++  YG  G+ EK+  L   M ++  V D+   +T++
Sbjct: 594 LYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTIL 649



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 4/239 (1%)

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           +T+ID   KA++++ + S +  MV S    P   +L+++  ++ N+ +        +   
Sbjct: 46  STLIDNLRKARQYDAVVSVYHKMV-SALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMT 104

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGH 341
             G   ++  LN++ K + R+G  DK  S+   M++ +    P  VTYN ++  F KA  
Sbjct: 105 KRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKR 164

Query: 342 IEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           + +    F+ MK  G  +PN +TY  L+  Y K+G + +   +L ++E   +  D   ++
Sbjct: 165 LAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYS 224

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +ISA+   GD+E   ELF  M  R   P+ +T++ ++Q     G    A  +   M A
Sbjct: 225 SLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTA 283



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 147/347 (42%), Gaps = 5/347 (1%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTI 172
           C T+  L+    K K+  +A +LFE M   G  +P++  Y+ L+  Y +SG + E    +
Sbjct: 149 CVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLL 208

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            +M+     K DV+ YS LI +       +   ++  EM    +  + VTY+ ++ G G+
Sbjct: 209 EEMER-EGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGR 267

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             ++ E       M  + G  PD+     +      +G      K  +     G +    
Sbjct: 268 TGRWREASEMLKDMT-ARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTL 326

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N++     +    D    V++ M K+   P  VTYN +++    AG I +  + +K +
Sbjct: 327 TYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLL 386

Query: 353 --KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
             +   +KP+  T  +L+    K G +     I   +    +  +   +N +I  Y  A 
Sbjct: 387 LSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAAR 446

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            + +  +L+    E    P+++T++ MI     + M   A+ L  KM
Sbjct: 447 KLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKM 493


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 173/350 (49%), Gaps = 9/350 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           TF  L+  L K  + E+A  +FE M  S    P+V  YT +++   + G LD A   + D
Sbjct: 102 TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL-D 160

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           + + + C P+V TYS+L++   K  R D    +L EM+  G +   + YNT+++G  K++
Sbjct: 161 LMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSR 220

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E       M+ SG C+P + T NS++  +  S  +++  +     +  G   D+   
Sbjct: 221 RLDEALELVQLMIRSG-CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINY 279

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE---KME---EY 348
           N +     R    D  ++++  M      P V+TY+ +I+   K   ++   K+E   E 
Sbjct: 280 NTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEI 339

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + MK  G  PN+ TY  ++    +A    +  ++LR++ +S+V+ D   F+ +I +  +
Sbjct: 340 LEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK 399

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + D++   ++F  M ER C P+ + +A +I   +  G  + A  +   M+
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV 449



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 167/367 (45%), Gaps = 21/367 (5%)

Query: 107 QQWYQARC--QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           Q + + RC    FT   ++ G CK  + +QA  L + M   G+ P V V+  ++    ++
Sbjct: 19  QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKA 78

Query: 163 GLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC- 218
           G   +A   F T+   K    C PD+ T++IL+ +  K  R +   +I   M +   +C 
Sbjct: 79  GRFGDALGYFKTVAGTK----CTPDIITFNILVDALVKSGRVEEAFQIFESM-HTSSQCL 133

Query: 219 -SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + VTY T+I+G  K  K +        M E+ GC P++ T + ++     +G  +K   
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNET-GCCPNVITYSVLVEGLCKAGRTDKGFT 192

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
              E    G + D+   N L     ++   D+   ++  M +   +PTVVTYN ++E F 
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           ++  +++     + M  RG  P+ I Y ++++   +   +    ++L+Q+  +  + D  
Sbjct: 253 RSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVI 312

Query: 398 FFNCIISAYGQAGDV------EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            ++ II    +   V      E   E+   MK+  C P+  T+A +I+       ++ A 
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 452 NLENKMI 458
            L  +MI
Sbjct: 373 ALLRRMI 379



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 2/282 (0%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C P+ +TY  LI    K  + D   ++L EM   GI      +N +I G  KA +F +  
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDAL 85

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 299
             F   V    C PDI T N ++ A   SG +E+  + +   +       ++ T   +  
Sbjct: 86  GYFKT-VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVIN 144

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              + G  D+   ++D M +    P V+TY++++E   KAG  +K     ++M  RG +P
Sbjct: 145 GLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQP 204

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + I Y +L++   K+  + +   +++ +  S        +N ++  + ++  V++   L 
Sbjct: 205 DVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLI 264

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             M ER C PD I + T+I         + AQ L  +M+A +
Sbjct: 265 QVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 151/320 (47%), Gaps = 8/320 (2%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           +L +  Q  QA  LF     +   P+   Y +L+    ++G LD+A+  +++M+      
Sbjct: 7   LLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD-RGIP 62

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEME 240
           P V  ++ +I+   K  RF   + +    +  G +C+   +T+N ++D   K+ + EE  
Sbjct: 63  PGVAVHNGVIRGLCKAGRFG--DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F +M  S  C P++ T  ++I+     G +++  +  +  N  G   ++ T ++L + 
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +AG  DK  +++  M +R F P V+ YN ++    K+  +++  E  + M   G  P 
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY SL+  + ++  + +   +++ +       D   +N +I+   +   ++    L  
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 421 TMKERHCVPDNITFATMIQA 440
            M    CVPD IT++T+I  
Sbjct: 301 QMVAARCVPDVITYSTIIDG 320



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 21/360 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K  + ++   L + M   G +P V +Y  L++   +S  LDEA   +  M
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S C P V TY+ L++   +  + D   +++  MS  G     + YNT+I G  +  +
Sbjct: 233 IR-SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR 291

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE---KMEKWYNEFNLM---GVKA 289
            ++ ++    MV +  C PD+ T +++I        ++   K+E       +M   G   
Sbjct: 292 LDDAQALLKQMV-AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPP 350

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +  T  ++ +   RA    +  +++  M      P + ++++VI +  K+  ++   + F
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR----QVENSDVILDTPFFNCIISA 405
             M  R  KPN + Y +L+   SK G   +VD  +R     VE+    + T  +N ++  
Sbjct: 411 GMMSERECKPNPVAYAALIDGLSKGG---EVDKAVRVFELMVESFRPGVAT--YNSVLDG 465

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMK 461
               G +E+   +   M  + C PD  ++  +I+    +   E A    Q +E K  AM+
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 13/262 (4%)

Query: 107 QQWYQARC--QTFTKLMVMLGKCK--------QPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +Q   ARC     T   ++ G CK        + E A  + E+M   G  P+   Y  ++
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               ++    +A + +  M   S+  PD+ ++S++I S  K H  D   KI   MS    
Sbjct: 360 EGLCRARKSQQALALLRRMID-SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V Y  +IDG  K  + ++    F  MVES    P + T NS++      G IE+  
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF--RPGVATYNSVLDGLCGVGRIEEAV 476

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +            D  +   L +   R    ++   +   ++ + F   V  YN+++   
Sbjct: 477 RMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNEL 536

Query: 337 GKAGHIEKMEEYFKKMKHRGMK 358
            K   +        K+   G K
Sbjct: 537 CKKKRLSDAHGVANKLIEAGYK 558


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 157/361 (43%), Gaps = 40/361 (11%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           V+     +P +  Y  L+ AYG+S  +++A  T N M+    C P+  T+ +LI      
Sbjct: 94  VLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEAL-CVPNEETFGVLINGYRLA 152

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
             F+  E++  +M   G     +  NT +     AK++   E+ F  + E   C P+I T
Sbjct: 153 GSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDL-EKYECEPNIDT 211

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-------DKMR 311
            N MI  YG +G   K E  Y          +I T   L  ++ R G+Y       DK++
Sbjct: 212 YNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQ 271

Query: 312 S----------------------------VMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
                                        +   MQ+   FP  V++NI+I  +G+AG  E
Sbjct: 272 EFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYE 331

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             E+ FK M+  G  PN  +   L+SAY++AG + + + ++  +E      DT  +N +I
Sbjct: 332 DAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLI 391

Query: 404 SAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +AYG +G  E M  L   M     +   PD  T+ T+IQ Y   G    A+ L   +  +
Sbjct: 392 NAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARL 451

Query: 461 K 461
           K
Sbjct: 452 K 452



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 164/313 (52%), Gaps = 5/313 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +++V+ GK  +P +A +L+  M      P++  +TAL++A+ + GL  EA    + +
Sbjct: 211 TYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKL 270

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   D KPD Y Y+ L+++ ++        +I   M   G     V++N +I+ YG+A  
Sbjct: 271 QEF-DYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E+ E  F +M +S G  P++ +   ++SAY  +G +E+ E+  +     G K D    N
Sbjct: 330 YEDAEKIFKSM-QSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYN 388

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            L  +YG +G ++ M +++  M K   +   P + TYN +I+ + +AG I + EE F+ +
Sbjct: 389 SLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGL 448

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
               + P++ T+ +L+  Y+K  L  K  SIL+++  S    D      + SA      V
Sbjct: 449 ARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQV 508

Query: 413 EKMGELFLTMKER 425
           E++ +L  +++ R
Sbjct: 509 EQVTQLMESLQGR 521


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 144/289 (49%), Gaps = 1/289 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +YTY+ILI    + HR +L   +   +   G+     +YNT+IDG+ K  + ++    
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M+E     PD+ T NS+I     +  + K E+   +    G++ + +T N L   Y 
Sbjct: 180 FYKMIEQS-VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYS 238

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            AGM+ +   V   M      P VV  N  I    +   I++ ++ F  M  +G KPN I
Sbjct: 239 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNII 298

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y+  G    ++S++  + +  ++ +  FFN +I+AY + G ++K   +F  M
Sbjct: 299 SYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDM 358

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           + +  +PD +TFAT+I +   +G  + A +  N M+ +     + + +C
Sbjct: 359 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRC 407



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 156/329 (47%), Gaps = 14/329 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +  +PE A  +F  +L  GL P V  Y  L+  + + G +D+A+     M
Sbjct: 124 TYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKM 183

Query: 176 --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
             +SVS   PDV TY+ LI    K       E++L +M   GI  +  TYN++I GY  A
Sbjct: 184 IEQSVS---PDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTA 240

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             ++E    F  M  S G  P +   NS I A      I++ +  ++   L G K +I +
Sbjct: 241 GMWKESVRVFKEM-SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + L   Y   G +  M S+++ M  +   P    +NI+I  + + G ++K    F+ M+
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ 359

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP----FFNCIISAYGQA 409
           ++GM P+++T+ +++S+  + G   ++D  L +  N  V +  P     + C+I      
Sbjct: 360 NKGMIPDTVTFATVISSLCRIG---RLDDALHKF-NHMVDIGVPPSEAVYRCLIQGCCNH 415

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMI 438
           G++ K  EL   M  +   P  + + + I
Sbjct: 416 GELVKAKELISEMMNKDIPPPGVKYFSSI 444



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 155/351 (44%), Gaps = 7/351 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  L+    +C   ++A L+FE M + G+ P    +  ++S+  + G LD+A    N M 
Sbjct: 335 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 394

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY-NTIIDGYGKAKK 235
            +    P    Y  LI+ C         +++++EM    I    V Y ++II+   K  +
Sbjct: 395 DIG-VPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR 453

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E +     MV++G   P++ T NS++  Y   GN+E+     +    +G++ +     
Sbjct: 454 VAEGKDIMDLMVQTGQ-RPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYG 512

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D   +V   M  +   PT V YNI++    +A      ++ F +M   
Sbjct: 513 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIES 572

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G   +  TY  ++    +     + + +L ++   +V  D   FN +ISA  + G  ++ 
Sbjct: 573 GTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEA 632

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466
            ELF  +     VP   T+  MI   + L   E+ +  +N  I++ E SG+
Sbjct: 633 KELFAAISTYGLVPTVHTYNLMI---SNLIKEESYEEADNLFISV-EKSGR 679



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 135/294 (45%), Gaps = 2/294 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +  +   + ++M+  G +P+V  + +L+  Y   G ++EAF+ ++ M 
Sbjct: 441 FSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 500

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S+   +P+ Y Y  L+    K  R D    +  +M + G++ ++V YN I+ G  +A++ 
Sbjct: 501 SIG-IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRT 559

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M+ESG     I T   ++     +   ++      +   M VK DI T NI
Sbjct: 560 TAAKKMFHEMIESGTT-VSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNI 618

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +  +  + G   + + +   +      PTV TYN++I    K    E+ +  F  ++  G
Sbjct: 619 VISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSG 678

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
             P+S     +V    K   + K  + L  ++ +++ L+    + + S + + G
Sbjct: 679 RAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREG 732


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 172/379 (45%), Gaps = 38/379 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++ G+  Q     A+  T   ++  L    +  +A  LFE +   G+KP    Y AL+
Sbjct: 259 ALQLLGMA-QATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALL 317

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE----------- 205
             Y ++G L +A S +++M+      PD +TYS+LI +     R++              
Sbjct: 318 KGYVKTGPLKDAESMVSEMEK-RGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDV 376

Query: 206 ------------------------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
                                   ++L EM  +G++     YN +ID +GK    +   +
Sbjct: 377 QPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMT 436

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           +F  M+ S G  PD  T N++I  +   G     E+ +      G      T NI+  SY
Sbjct: 437 TFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 495

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G    +D M+ ++  M+ +   P VVT+  +++ +GK+G      E  ++MK  G+KP+S
Sbjct: 496 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 555

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L++AY++ GL  +  +  R + +  +       N +I+A+G+     +   +   
Sbjct: 556 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 615

Query: 422 MKERHCVPDNITFATMIQA 440
           MKE    PD +T+ T+++A
Sbjct: 616 MKENGVKPDVVTYTTLMKA 634



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 2/338 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q    +++   K   P +A  L  +  + GL        +++SA   SG   EA +   +
Sbjct: 241 QLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEE 300

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  S  KP    Y+ L+K   K       E +++EM   G+     TY+ +ID Y  A 
Sbjct: 301 LRQ-SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAG 359

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++E        M E+G   P+ F  + +++ + + G  +K  +   E   +GVK D Q  
Sbjct: 360 RWESARIVLKEM-EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFY 418

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N++  ++G+    D   +  D M      P  VT+N +I+   K G     EE F+ M+ 
Sbjct: 419 NVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER 478

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG  P + TY  ++++Y        +  +L ++++  ++ +      ++  YG++G    
Sbjct: 479 RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFND 538

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             E    MK     P +  +  +I AY   G++E A N
Sbjct: 539 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVN 576



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 2/300 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A ++ + M +  ++P+  V++ L++ +   G   + F  + +MKS+   KPD   Y++
Sbjct: 362 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIG-VKPDRQFYNV 420

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I +  KF+  D        M   GIE   VT+NT+ID + K  +    E  F AM E  
Sbjct: 421 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERR 479

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC P   T N MI++YG+    + M++   +    G+  ++ T   L   YG++G ++  
Sbjct: 480 GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDA 539

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
              ++ M+     P+   YN +I  + + G  E+    F+ M   G+KP+ +   SL++A
Sbjct: 540 IECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINA 599

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + +     +  ++L+ ++ + V  D   +  ++ A  +    +K+  ++  M    C PD
Sbjct: 600 FGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPD 659



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 158/343 (46%), Gaps = 9/343 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+ A  ++  +++A + I  M+
Sbjct: 141 YSILIHALGRSEKLYEAFLLSQ---KQTLTPLT--YNALIGACARNNDIEKALNLIAKMR 195

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                + D   YS++I+S T+ ++ D  ++ ++  E+    +E      N II G+ K+ 
Sbjct: 196 Q-DGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 254

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                      M ++ G      TL S+ISA  +SG   + E  + E    G+K   +  
Sbjct: 255 D-PSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 313

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y + G      S++  M+KR   P   TY+++I+ +  AG  E      K+M+ 
Sbjct: 314 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 373

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++PNS  +  L++ +   G   K   +L+++++  V  D  F+N +I  +G+   ++ 
Sbjct: 374 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 433

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               F  M      PD +T+ T+I  +   G    A+ +   M
Sbjct: 434 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM 476



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 23/293 (7%)

Query: 86  DEAIKQKKWQL--ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           D    QK +Q+   +K  G+   +Q+Y     TF       GK    + A   F+ MLS+
Sbjct: 392 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTF-------GKFNCLDHAMTTFDRMLSE 444

Query: 144 GLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           G++P    +  L+  + + G   + +E F  +        C P   TY+I+I S     R
Sbjct: 445 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RGCLPCATTYNIMINSYGDQER 500

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           +D ++++L +M   GI  + VT+ T++D YGK+ +F +       M +S G  P     N
Sbjct: 501 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEM-KSVGLKPSSTMYN 559

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           ++I+AY   G     E+  N F +M   G+K  +  LN L  ++G      +  +V+ +M
Sbjct: 560 ALINAYAQRG---LSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYM 616

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           ++    P VVTY  +++   +    +K+   +++M   G KP+      L SA
Sbjct: 617 KENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 669



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +Y+ L+ A G+S  L EAF  ++  ++++       TY+ LI +C + +  +    ++A+
Sbjct: 140 LYSILIHALGRSEKLYEAF-LLSQKQTLTPL-----TYNALIGACARNNDIEKALNLIAK 193

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           M   G +   V Y+ +I    ++ K +  M       +E      D+  +N +I  +  S
Sbjct: 194 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKS 253

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G+  K  +        G+ A   TL  +  +   +G   +  ++ + +++    P    Y
Sbjct: 254 GDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 313

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++ + K G ++  E    +M+ RG+ P+  TY  L+ AY  AG       +L+++E 
Sbjct: 314 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 373

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            DV  ++  F+ +++ +   G+ +K  ++   MK     PD   +  +I  +      + 
Sbjct: 374 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 433

Query: 450 AQNLENKMIA 459
           A    ++M++
Sbjct: 434 AMTTFDRMLS 443


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 172/379 (45%), Gaps = 38/379 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++ G+  Q     A+  T   ++  L    +  +A  LFE +   G+KP    Y AL+
Sbjct: 288 ALQLLGMA-QATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALL 346

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE----------- 205
             Y ++G L +A S +++M+      PD +TYS+LI +     R++              
Sbjct: 347 KGYVKTGPLKDAESMVSEMEK-RGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDV 405

Query: 206 ------------------------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
                                   ++L EM  +G++     YN +ID +GK    +   +
Sbjct: 406 QPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMT 465

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           +F  M+ S G  PD  T N++I  +   G     E+ +      G      T NI+  SY
Sbjct: 466 TFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 524

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G    +D M+ ++  M+ +   P VVT+  +++ +GK+G      E  ++MK  G+KP+S
Sbjct: 525 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 584

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L++AY++ GL  +  +  R + +  +       N +I+A+G+     +   +   
Sbjct: 585 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 644

Query: 422 MKERHCVPDNITFATMIQA 440
           MKE    PD +T+ T+++A
Sbjct: 645 MKENGVKPDVVTYTTLMKA 663



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 2/338 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q    +++   K   P +A  L  +  + GL        +++SA   SG   EA +   +
Sbjct: 270 QLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEE 329

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  S  KP    Y+ L+K   K       E +++EM   G+     TY+ +ID Y  A 
Sbjct: 330 LRQ-SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAG 388

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++E        M E+G   P+ F  + +++ + + G  +K  +   E   +GVK D Q  
Sbjct: 389 RWESARIVLKEM-EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFY 447

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N++  ++G+    D   +  D M      P  VT+N +I+   K G     EE F+ M+ 
Sbjct: 448 NVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER 507

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG  P + TY  ++++Y        +  +L ++++  ++ +      ++  YG++G    
Sbjct: 508 RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFND 567

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             E    MK     P +  +  +I AY   G++E A N
Sbjct: 568 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVN 605



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 151/316 (47%), Gaps = 2/316 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+       + E A ++ + M +  ++P+  V++ L++ +   G   + F  + +
Sbjct: 375 HTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKE 434

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS+   KPD   Y+++I +  KF+  D        M   GIE   VT+NT+ID + K  
Sbjct: 435 MKSIG-VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 493

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +    E  F AM E  GC P   T N MI++YG+    + M++   +    G+  ++ T 
Sbjct: 494 RHIVAEEMFEAM-ERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 552

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   YG++G ++     ++ M+     P+   YN +I  + + G  E+    F+ M  
Sbjct: 553 TTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTS 612

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+KP+ +   SL++A+ +     +  ++L+ ++ + V  D   +  ++ A  +    +K
Sbjct: 613 DGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQK 672

Query: 415 MGELFLTMKERHCVPD 430
           +  ++  M    C PD
Sbjct: 673 VPVVYEEMIMSGCKPD 688



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 158/343 (46%), Gaps = 9/343 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+ A  ++  +++A + I  M+
Sbjct: 170 YSILIHALGRSEKLYEAFLLSQ---KQTLTPLT--YNALIGACARNNDIEKALNLIAKMR 224

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                + D   YS++I+S T+ ++ D  ++ ++  E+    +E      N II G+ K+ 
Sbjct: 225 Q-DGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 283

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                      M ++ G      TL S+ISA  +SG   + E  + E    G+K   +  
Sbjct: 284 D-PSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 342

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y + G      S++  M+KR   P   TY+++I+ +  AG  E      K+M+ 
Sbjct: 343 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 402

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++PNS  +  L++ +   G   K   +L+++++  V  D  F+N +I  +G+   ++ 
Sbjct: 403 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 462

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               F  M      PD +T+ T+I  +   G    A+ +   M
Sbjct: 463 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM 505



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 23/293 (7%)

Query: 86  DEAIKQKKWQL--ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           D    QK +Q+   +K  G+   +Q+Y     TF       GK    + A   F+ MLS+
Sbjct: 421 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTF-------GKFNCLDHAMTTFDRMLSE 473

Query: 144 GLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           G++P    +  L+  + + G   + +E F  +        C P   TY+I+I S     R
Sbjct: 474 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RGCLPCATTYNIMINSYGDQER 529

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           +D ++++L +M   GI  + VT+ T++D YGK+ +F +       M +S G  P     N
Sbjct: 530 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEM-KSVGLKPSSTMYN 588

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           ++I+AY   G     E+  N F +M   G+K  +  LN L  ++G      +  +V+ +M
Sbjct: 589 ALINAYAQRG---LSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYM 645

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           ++    P VVTY  +++   +    +K+   +++M   G KP+      L SA
Sbjct: 646 KENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +Y+ L+ A G+S  L EAF  ++  ++++       TY+ LI +C + +  +    ++A+
Sbjct: 169 LYSILIHALGRSEKLYEAF-LLSQKQTLTPL-----TYNALIGACARNNDIEKALNLIAK 222

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           M   G +   V Y+ +I    ++ K +  M       +E      D+  +N +I  +  S
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKS 282

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G+  K  +        G+ A   TL  +  +   +G   +  ++ + +++    P    Y
Sbjct: 283 GDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 342

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++ + K G ++  E    +M+ RG+ P+  TY  L+ AY  AG       +L+++E 
Sbjct: 343 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 402

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            DV  ++  F+ +++ +   G+ +K  ++   MK     PD   +  +I  +      + 
Sbjct: 403 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 462

Query: 450 AQNLENKMIA 459
           A    ++M++
Sbjct: 463 AMTTFDRMLS 472


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 174/372 (46%), Gaps = 9/372 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + + W  A ++F   R     +      T L+ +LG  ++  +A  LF  M   G++  +
Sbjct: 185 QMRNWDAASRVFRAFRSAS-VEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPI 243

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             + AL+ A G+ G  D A     +MK +    PD  T+  L+ + T   ++   +  + 
Sbjct: 244 YTFNALMVACGRCGAGDTAVELFEEMKELG-LAPDNITFRGLVSATTAAGKWKAAQSFIN 302

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G   +   +  +     +A+   E      AM+E G C P +   N+++ AY  +
Sbjct: 303 LMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQG-CEPRLENYNALLCAYEKT 361

Query: 270 GNIEKMEK---WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            N E+  +   W  E    G   D  T + L  +   AG  +K  +VM+ M++  F P V
Sbjct: 362 ANWEEAVRTVVWIQE---KGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNV 418

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V++  +++ + K G+ EK EE F  M + G  PN + + SL+SAY K     +V   + +
Sbjct: 419 VSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEK 478

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
            E   V LD   ++  ISA  +AG  +   +    MK+  C P+ +T++++I+AY  +G+
Sbjct: 479 QEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGL 538

Query: 447 TEAAQNLENKMI 458
              A+++   M+
Sbjct: 539 WNKAESVFKSML 550



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 171/376 (45%), Gaps = 24/376 (6%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           KW+ A     L+ Q   +      FT++     + +   ++  L + M+  G +P ++ Y
Sbjct: 293 KWKAAQSFINLM-QAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRLENY 351

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY ++   +EA  T+  ++      PD  T+S L+ +C    + +    ++ +M 
Sbjct: 352 NALLCAYEKTANWEEAVRTVVWIQE-KGFTPDFITWSSLLGACANAGQAEKAVAVMEKMK 410

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-- 270
                 + V++  ++  Y K   +E+ E  F +M+ SG C P+    NS++SAY      
Sbjct: 411 ENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSG-CPPNEVAWNSLLSAYEKGRQW 469

Query: 271 -----NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
                 IEK E+       +GVK D+   +    +  +AG +      +  M++    P 
Sbjct: 470 KRVLYTIEKQEE-------LGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPN 522

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV----D 381
           +VTY+ +I+ +G  G   K E  FK M   G++P+S   C+L+ AY+K   + KV    D
Sbjct: 523 IVTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFD 582

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           S++ +     +  D   +  I  A    G+ ++  +    M+   C PD + + T+I  Y
Sbjct: 583 SMMPRY---GIKPDKYAYAAIFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMY 639

Query: 442 NALGMTEAAQNLENKM 457
            A G  + A  +  KM
Sbjct: 640 EAHGQVDKAMEILKKM 655



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 161/396 (40%), Gaps = 40/396 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ALK+F  + +Q   +    TF  LMV  G+C   + A  LFE M   GL P    +  LV
Sbjct: 227 ALKLFRWMEKQG-IERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLV 285

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           SA   +G    A S IN M++       +  ++ +  +C +         +L  M   G 
Sbjct: 286 SATTAAGKWKAAQSFINLMQA-GGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQGC 344

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E     YN ++  Y K   +EE   +    ++  G  PD  T +S++ A  N+G  EK  
Sbjct: 345 EPRLENYNALLCAYEKTANWEEAVRTV-VWIQEKGFTPDFITWSSLLGACANAGQAEKAV 403

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM------------------- 317
               +        ++ +   L K+Y + G ++K   +   M                   
Sbjct: 404 AVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAY 463

Query: 318 -----QKRFFFPT-----------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                 KR  +             VV ++  I    KAG  +  E+  ++MK  G +PN 
Sbjct: 464 EKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNI 523

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY SL+ AY   GL  K +S+ + +    +  D+     ++ AY +   ++K+   F +
Sbjct: 524 VTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDS 583

Query: 422 MKERHCV-PDNITFATMIQAYNALG-MTEAAQNLEN 455
           M  R+ + PD   +A +  A    G    AA  +EN
Sbjct: 584 MMPRYGIKPDKYAYAAIFWACWTCGEWQRAADYMEN 619



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%)

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V + N+V+   G+  + +     F+  +   ++PN+    +L++       + +   + R
Sbjct: 173 VRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFR 232

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            +E   +      FN ++ A G+ G  +   ELF  MKE    PDNITF  ++ A  A G
Sbjct: 233 WMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAG 292

Query: 446 MTEAAQNLENKMIA 459
             +AAQ+  N M A
Sbjct: 293 KWKAAQSFINLMQA 306



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 100/255 (39%), Gaps = 38/255 (14%)

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            +V   G   D+ ++N ++   G   N +   + +  F    V+ +      L    G  
Sbjct: 162 GVVHETGLRVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYG 221

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
               +   +  +M+K+     + T+N ++   G+ G  +   E F++MK  G+ P++IT+
Sbjct: 222 RRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITF 281

Query: 365 CSLVSAYSKAGLIMKVDSIL-------------------------RQVENSDVILDTPF- 398
             LVSA + AG      S +                         R    S  +L     
Sbjct: 282 RGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIE 341

Query: 399 ---------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                    +N ++ AY +  + E+     + ++E+   PD IT+++++ A    G  E 
Sbjct: 342 QGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEK 401

Query: 450 AQNLENKMIAMKENS 464
           A  +  K   MKEN+
Sbjct: 402 AVAVMEK---MKENN 413



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  +WQLA K    +RQ +  Q+ CQ    T++ L+   G      +A  +F+ ML +G+
Sbjct: 500 KAGQWQLAEK---KIRQMK--QSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLEGI 554

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P      AL+ AY +   LD+     + M      KPD Y Y+ +  +C     +    
Sbjct: 555 RPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACWTCGEWQRAA 614

Query: 206 KILAEMSYLGIECSAVTYNTIIDGY 230
             +  M   G     + Y T+I  Y
Sbjct: 615 DYMENMEAAGCTPDTMIYTTLITMY 639


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  +M  L K  + E+A LLF  M   G  P+   +  ++    Q   +D+A    ++M
Sbjct: 117 TYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++  D  PD ++Y ILI    K  + +   K+   M   GI  SAVTYN +I G   A  
Sbjct: 177 EA-RDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    F +M  S GC P  FT N +I A+   G +++  +        G   D+ T +
Sbjct: 236 LDEALELFKSM-RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYS 294

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L          D  R +++ M KR   PTVVT N +I    KAG I++  E    M   
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+ +TY +LV  + +AG   +   +L  +    +  +   +  ++S   +A  + + 
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  MK   C P+  T+  +I  + + G  +    L  +M+
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 10/348 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L K  +   A  LF+ +L  G+ PS   YT+L+     +   D+A     DM
Sbjct: 12  SYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                C P   TY+++I +  K        DLI+K++ +    G     VTYNT++DG  
Sbjct: 72  NR-RGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIED----GHVPDVVTYNTVMDGLC 126

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K+ + EE    F+ M E  GC P+  + N++I        I++  + ++E     +  D 
Sbjct: 127 KSGRVEEALLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDS 185

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            +  IL     +AG  ++   +   M      P+ VTYN+VI     A  +++  E FK 
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ +G +P+  T+  L+ A+ K G + +   +L+++ +   + D   ++ +IS       
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           V+    L   M +R C P  +T  T+I      G  + A+ + + M++
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 2/260 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  LF+ M S G +PS   +  L+ A+ + G +DEAF  +  M       PDV TYS 
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV-PDVVTYST 295

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI       R D    +L +M     + + VT NT+I G  KA + +E      AMV SG
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD+ T N+++  +  +G  E+  +  ++    G+  ++ T   L     +A    + 
Sbjct: 356 Q-SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V   M+     P + TY  +I  F  AG ++   + F +M   G+ P+ + Y +L + 
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAE 474

Query: 371 YSKAGLIMKVDSILRQVENS 390
             K+G   +   ILR+   S
Sbjct: 475 LCKSGRSARALEILREGRES 494



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 134/312 (42%), Gaps = 38/312 (12%)

Query: 183 PDVYTYSILIKSCTKFHRF----DLIEKIL------------------------------ 208
           PD ++Y ILI    K  +     DL +K+L                              
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 209 -AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAY 266
            A+M+  G   S VTYN IID   K    EE       M+E G  H PD+ T N+++   
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDG--HVPDVVTYNTVMDGL 125

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             SG +E+    +NE   +G   + ++ N +     +    D+   V   M+ R   P  
Sbjct: 126 CKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDS 185

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            +Y I+I+   KAG + +  + F++M   G+ P+++TY  ++     A  + +   + + 
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +         FN +I A+ + G +++   L   M +   VPD +T++T+I    ++  
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 447 TEAAQNLENKMI 458
            + A++L   M+
Sbjct: 306 VDDARHLLEDMV 317



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 8/276 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L    + + A  L E M+    KP+V     L+    ++G + EA   ++ M
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S S   PDV TY+ L+    +  + +   ++L++M   G+  + VTY  ++ G  KA +
Sbjct: 352 VS-SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 410

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F+ M +S GC P++FT  ++I  + ++G ++   K + E    G+  D     
Sbjct: 411 LPEACGVFAQM-KSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYG 469

Query: 296 ILTKSYGRAGMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            L     ++G   +    +R   + ++   +   V  Y   ++    AG +E    + + 
Sbjct: 470 TLAAELCKSGRSARALEILREGRESLRSEAWGDEV--YRFAVDGLLDAGKMEMALGFVRD 527

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           M   G  P      SLV+   K+G   +  ++L ++
Sbjct: 528 MVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           NE N   V  D  +  IL     +AG  +  R +   +      P+ V Y  +I     A
Sbjct: 2   NERN---VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMA 58

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
              +   E F  M  RG  P+ +TY  ++ A  K G++ +   +++++     + D   +
Sbjct: 59  NSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 118

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           N ++    ++G VE+   LF  M+   C P+  +  T+I
Sbjct: 119 NTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTII 157



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M +R   P   +Y I+I+   KAG +    + F+K+ H G+ P+++ Y SL+     A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                 +   +           +N II A  + G +E+  +L   M E   VPD +T+ T
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           ++      G  E A  L N+M
Sbjct: 121 VMDGLCKSGRVEEALLLFNEM 141


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 160/352 (45%), Gaps = 16/352 (4%)

Query: 114 CQTFTKLMVMLGKC--KQPEQASLLFEVMLSDG---LKPSVDVYTALVSAYGQSGLLDEA 168
           C T  K     G C  K+ E+A  L   M  DG     P+V  Y  ++    ++  +D A
Sbjct: 164 CNTLLK-----GLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRA 218

Query: 169 FSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
              +  M  K V   K DV TYS +I    K    D  E +L  M   G++   VTYNTI
Sbjct: 219 EGVLQHMIDKGV---KLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTI 275

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           IDG  KA+  +  E     M++ G   PD+ T N++I     +  +++ +          
Sbjct: 276 IDGLCKAQAVDRAEGVLQHMIDKG-VKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKD 334

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           VK DIQT N L   Y   G + ++   ++ M  R   P VVTY+++++   K G   +  
Sbjct: 335 VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEAR 394

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           + F  M  +G+KPN   Y  L+  Y+  G I  +  +L  +  + +  +   FN ++ AY
Sbjct: 395 KIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAY 454

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +   +++   +F  M +    PD +T+  +I A   LG  + A    N+MI
Sbjct: 455 AKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 164/381 (43%), Gaps = 45/381 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  + + M+  G+K  V  Y+ ++    ++  +D A   +  M
Sbjct: 201 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHM 260

Query: 176 --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
             K V   KPDV TY+ +I    K    D  E +L  M   G++   VTYNTIIDG  KA
Sbjct: 261 IDKGV---KPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 317

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN----IEKMEKWYNE-------- 281
           +  +  +     M++     PDI T N +I  Y ++G     + ++E+ Y          
Sbjct: 318 QAVDRADGVLQHMIDKD-VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVT 376

Query: 282 FNLM-----------------------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           ++L+                       G+K ++    IL   Y   G    +  ++D M 
Sbjct: 377 YSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMV 436

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P    +NIV+  + K   I++    F +M   G+ P+ +TY  L+ A  K G + 
Sbjct: 437 ANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVD 496

Query: 379 KVDSILR--QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             D++L+  Q+ N  V  ++  FN ++         EK  ELF  M ++   P+ + F T
Sbjct: 497 --DAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNT 554

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           ++      G    AQ L + M
Sbjct: 555 IMCNLCNEGQVMVAQRLIDSM 575



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 158/351 (45%), Gaps = 9/351 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK---QPEQASLLFEVM---LSDGLKPSVD 150
           ALK+F  L       A  + F  L+ ++ + +     E A  LF  M    S+ ++P + 
Sbjct: 33  ALKLFDELLPHA-RPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLC 91

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y+ L   + + G ++  F+    +        +V    +L   C      + ++ +L  
Sbjct: 92  TYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRR 151

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG--CHPDIFTLNSMISAYGN 268
           M   G   + V+ NT++ G    K+ EE       M E GG  C P++ T N++I     
Sbjct: 152 MPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  +++ E         GVK D+ T + +     +A   D+   V+  M  +   P VVT
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 271

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I+   KA  +++ E   + M  +G+KP+ +TY +++    KA  + + D +L+ + 
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           + DV  D   +NC+I  Y   G+ +++      M  R   PD +T++ ++ 
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLD 382



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 152/345 (44%), Gaps = 2/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  + + M+  G+KP V  Y  ++    ++  +D A   +  M
Sbjct: 271 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHM 330

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               D KPD+ TY+ LI        +  + + L EM   G++   VTY+ ++D   K  K
Sbjct: 331 ID-KDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGK 389

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M+  G   P++     ++  Y   G I  +    +     G+  +    N
Sbjct: 390 CTEARKIFYCMIRKG-IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFN 448

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +Y +  M D+   +   M +    P VVTY I+I+   K G ++     F +M + 
Sbjct: 449 IVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMIND 508

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PNS+ + SLV          K + +  ++ +  V  +  FFN I+      G V   
Sbjct: 509 GVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVA 568

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             L  +M+     P+ I++ T+I  +   G T+ A  L + M+++
Sbjct: 569 QRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSV 613



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 44/373 (11%)

Query: 93  KWQLALKIFGLLRQQQWYQA---RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +W+ A ++F     + W Q        F  +M  L    Q   A  L + M   G++P+V
Sbjct: 529 RWEKAEELF----FEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNV 584

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+  +  +G  DEA   ++ M SV   KPD+ +Y  L++   K  R D    +  
Sbjct: 585 ISYNTLIGGHCLAGRTDEAAQLLDVMVSVG-LKPDLISYDTLLRGYCKTGRIDNAYCLFR 643

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+   AVTY+TI+ G    ++F E +  +  M++SG                   
Sbjct: 644 EMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG------------------- 684

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
                 ++W           DI T NI+     +    D+   +   +  +   P ++T+
Sbjct: 685 ------QQW-----------DIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITF 727

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            I+I+   K G  +   + F  +   G+ PN +TYC ++    + GL+ + D++   +E 
Sbjct: 728 TIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEK 787

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           S    D+   N II +    G++ + G     + E +   +  T + +I  ++       
Sbjct: 788 SGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNH 847

Query: 450 AQNLENKMIAMKE 462
           A++L  K + ++E
Sbjct: 848 AKSLPEKYLFLEE 860



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 137/307 (44%), Gaps = 2/307 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K  +  +A  +F  M+  G+KP+V +Y  L+  Y   G + +  + + D+
Sbjct: 376 TYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIAD-LTDLLDL 434

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   P+ Y ++I++ +  K    D    I + MS  G+    VTY  +ID   K  +
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++    F+ M+  G   P+    NS++         EK E+ + E    GV+ ++   N
Sbjct: 495 VDDAVLKFNQMINDG-VTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFN 553

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +    G     + ++D M++    P V++YN +I     AG  ++  +    M   
Sbjct: 554 TIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSV 613

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+ I+Y +L+  Y K G I     + R++    V      ++ I+          + 
Sbjct: 614 GLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEA 673

Query: 416 GELFLTM 422
            EL+L M
Sbjct: 674 KELYLNM 680



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 161/371 (43%), Gaps = 8/371 (2%)

Query: 95  QLALKIFGLLRQQQWYQAR---CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           +LA+ +F  + +    + R   C T++ L     +  + E     F ++L  G + +  V
Sbjct: 69  ELAVSLFNRMARACSNKVRPDLC-TYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVV 127

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
              L++    +  +DEA   +        C P+V + + L+K      R +   ++L  M
Sbjct: 128 INQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTM 187

Query: 212 SY-LGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           +   G  C+   VTYNTIIDG  KA+  +  E     M++ G    D+ T +++I     
Sbjct: 188 AEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKG-VKLDVVTYSTIIDGLCK 246

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  +++ E         GVK D+ T N +     +A   D+   V+  M  +   P VVT
Sbjct: 247 AQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 306

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I+   KA  +++ +   + M  + +KP+  TY  L+  Y   G   +V   L ++ 
Sbjct: 307 YNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMY 366

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +  D   ++ ++    + G   +  ++F  M  +   P+   +  ++  Y A G   
Sbjct: 367 ARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIA 426

Query: 449 AAQNLENKMIA 459
              +L + M+A
Sbjct: 427 DLTDLLDLMVA 437



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 146/362 (40%), Gaps = 41/362 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  + + M+   +KP +  Y  L+  Y  +G   E    + +M
Sbjct: 306 TYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEM 365

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     PDV TYS+L+    K  +     KI   M   GI+ +   Y  ++ GY     
Sbjct: 366 YA-RGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGA 424

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             ++      MV + G  P+ +  N ++ AY     I++    ++  +  G+  D+ T  
Sbjct: 425 IADLTDLLDLMV-ANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYG 483

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQ-----------------------------KRFFF--- 323
           IL  +  + G  D   +V+ F Q                             +  FF   
Sbjct: 484 ILIDALCKLGRVDD--AVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMW 541

Query: 324 -----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P VV +N ++      G +   +     M+  G++PN I+Y +L+  +  AG   
Sbjct: 542 DQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTD 601

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +L  + +  +  D   ++ ++  Y + G ++    LF  M  +   P  +T++T++
Sbjct: 602 EAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTIL 661

Query: 439 QA 440
           Q 
Sbjct: 662 QG 663


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 162/331 (48%), Gaps = 19/331 (5%)

Query: 46  EAEKDLSKILR----TEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQ-KKWQLALKI 100
           E  KD+ K LR    TE A+ N+   + + +             ++ +KQ +   +AL  
Sbjct: 325 EGVKDILKQLRWGPATEKALYNLNFSIDAYQ------------ANQILKQLQDHSVALSF 372

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           F  L++Q  +     T+T ++ +LG+ ++    + L E M+ DG +P+V  Y  L+ +YG
Sbjct: 373 FYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYG 432

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++  L EA +  N M+ +  C+PD  TY  LI    K    D+   +   M  +G+    
Sbjct: 433 RANYLGEALNVFNQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDT 491

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
            TY+ +I+  GK+         F  MV+ G C P+I T N +I+    + N +   K Y 
Sbjct: 492 FTYSVMINCLGKSGNLSAAHRLFCEMVDQG-CVPNIVTYNILIALQAKARNYQTALKLYR 550

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +    G K D  T +I+ +  G  G  ++  +V   M++  + P    Y ++I+ +GKAG
Sbjct: 551 DMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAG 610

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           ++EK  E++  M   G+ PN  T  SL+SA+
Sbjct: 611 NVEKAWEWYHAMLRAGLLPNVPTCNSLLSAF 641



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 1/280 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +TY+ ++    +   F  I K+L +M   G + + VTYN +I  YG+A    E  + F
Sbjct: 385 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVF 444

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           + M E G C PD  T  ++I  +  +G ++     Y     +G+  D  T +++    G+
Sbjct: 445 NQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGK 503

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G       +   M  +   P +VTYNI+I    KA + +   + ++ M++ G KP+ +T
Sbjct: 504 SGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVT 563

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  ++      G + + +++  +++ ++ + D P +  +I  +G+AG+VEK  E +  M 
Sbjct: 564 YSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAML 623

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
               +P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 624 RAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLN 663



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 10/273 (3%)

Query: 199 HRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEME------SSFSAMVESGG 251
           H  + ++ IL ++ +    E +    N  ID Y   +  ++++      S F  +    G
Sbjct: 322 HVVEGVKDILKQLRWGPATEKALYNLNFSIDAYQANQILKQLQDHSVALSFFYWLKRQPG 381

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              D  T  +M+   G +     + K   +    G + ++ T N L  SYGRA    +  
Sbjct: 382 FWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEAL 441

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +V + MQ+    P  VTY  +I+   KAG ++     +++M+  G+ P++ TY  +++  
Sbjct: 442 NVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCL 501

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K+G +     +  ++ +   + +   +N +I+   +A + +   +L+  M+     PD 
Sbjct: 502 GKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDK 561

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           +T++ +++     G  E A   E     MK+N+
Sbjct: 562 VTYSIVMEVLGYCGYLEEA---EAVFFEMKQNN 591



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 143/321 (44%), Gaps = 18/321 (5%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + +Q ALK++  + Q   ++    T++ +M +LG C   E+A  +F  M  +   P  
Sbjct: 538 KARNYQTALKLYRDM-QNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDE 596

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  L+  +G++G +++A+   + M   +   P+V T + L+ +  + HR      +L 
Sbjct: 597 PVYGLLIDLWGKAGNVEKAWEWYHAMLR-AGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQ 655

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M  LG+  S  TY  ++    +A+   +M      M  SG  HP    L SM +A  + 
Sbjct: 656 NMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGFCCELMAVSG--HPAHAFLQSMPAAGPDG 713

Query: 270 GNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            N+ + + K+ +  +    +     ++ +     ++G+ ++  SV +   ++  +P  + 
Sbjct: 714 QNVRDHVSKFLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIR 773

Query: 329 --------YNIVIETFGKA-GHIEKMEEYFKK-MKHRGMKPNSITYCSLVSAYSKAGLIM 378
                    N+ + + G A   + +   +F++ M   G+ PN I    +++ + +   + 
Sbjct: 774 EKSTCYWLINLHVMSDGTAVTALSRTLAWFRRQMLASGVGPNRI---DIITGWGRRSRVT 830

Query: 379 KVDSILRQVENSDVILDTPFF 399
               + + V+    +   PFF
Sbjct: 831 GSSLVRQAVQELLHVFSFPFF 851


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 166/364 (45%), Gaps = 3/364 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  L+Q+   +    +F  L++ L K  +   A  +F+ ML  GLK  V+V   L+
Sbjct: 144 ALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLI 203

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G+L +A   ++ M + + C  D +TY IL+ +  +  +   +   +    + G 
Sbjct: 204 HCTCRLGMLRQARRLLHHMTAHA-CARDAFTYGILVNAHCRAGQMHEVASFMELARHDGC 262

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             SAV YN II G+ +  +  E    F + +      PD+FT N +I A   S  +E+  
Sbjct: 263 ALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV-PDVFTYNLLI-ALCKSKQLEEAL 320

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             + E    GV  D+ T + L  ++G+AG   K   V   MQK    P  V YN++I   
Sbjct: 321 TLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCL 380

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           GK G +++  E  + M  +G+ P+  TY  ++   S  G   K  S    ++      D 
Sbjct: 381 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDV 440

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +++   +    ++  +LF  M+   C+PD  TF T+I      G  E A     +
Sbjct: 441 VTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR 500

Query: 457 MIAM 460
           ++ M
Sbjct: 501 LVKM 504



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 161/397 (40%), Gaps = 46/397 (11%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL     +      FT  +++   C+  Q  + +   E+   DG   S   Y  ++  + 
Sbjct: 218 LLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFI 277

Query: 161 QSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
           + G L EA   F +    +SV    PDV+TY++LI  C K  + +    +  E    G+ 
Sbjct: 278 RCGRLAEATQLFESTMTKESV----PDVFTYNLLIALC-KSKQLEEALTLFQEAEQGGVV 332

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
               TY+ ++D +GKA +  +    F  M +  GC PD    N +IS  G  G +++  +
Sbjct: 333 LDVFTYSYLMDAFGKAGRAAKALEVFYNM-QKAGCMPDTVVYNVLISCLGKQGKVDEALE 391

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV----- 332
              + N  G+  D +T NI+       G Y+K  S    M++R   P VVTYN +     
Sbjct: 392 LLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 451

Query: 333 ------------------------------IETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
                                         I+T  KAG +E   E   ++   G  PNS 
Sbjct: 452 KLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSY 511

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y +L+S + ++G + K   + + +       D+  +  ++  + + G      EL   M
Sbjct: 512 IYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEM 571

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
                 P   T+  +I++ +  G  E A  L  +MIA
Sbjct: 572 VREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIA 608



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 140/341 (41%), Gaps = 37/341 (10%)

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           T  + A+G++G LD A   ++DM+  + C+PD   ++  +    +  R +    +  +M 
Sbjct: 57  TECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMR 116

Query: 213 YLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
               +C+   V YNT+I GY KA   +     F  + + G C P+  + ++++       
Sbjct: 117 ET-CDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMS 175

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
                   + E    G+KAD+   N L     R GM  + R ++  M          TY 
Sbjct: 176 RATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYG 235

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD--------- 381
           I++    +AG + ++  + +  +H G   +++ Y  ++  + + G + +           
Sbjct: 236 ILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTK 295

Query: 382 -------------------------SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
                                    ++ ++ E   V+LD   ++ ++ A+G+AG   K  
Sbjct: 296 ESVPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKAL 355

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E+F  M++  C+PD + +  +I      G  + A  L   M
Sbjct: 356 EVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 396



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 151/355 (42%), Gaps = 3/355 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML-SDGLKPSVDVYTAL 155
           A+ +   +R+  + Q     FT  M  L + ++ EQA  LF+ M  +    P V  Y  L
Sbjct: 72  AMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTL 131

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           ++ Y ++G  D A      +K    CKP+  ++  L+    K  R      +  EM   G
Sbjct: 132 IAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAG 191

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           ++      NT+I    +     +       M  +  C  D FT   +++A+  +G + ++
Sbjct: 192 LKADVNVCNTLIHCTCRLGMLRQARRLLHHMT-AHACARDAFTYGILVNAHCRAGQMHEV 250

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
             +       G        N + + + R G   +   + +    +   P V TYN++I  
Sbjct: 251 ASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-A 309

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K+  +E+    F++ +  G+  +  TY  L+ A+ KAG   K   +   ++ +  + D
Sbjct: 310 LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPD 369

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           T  +N +IS  G+ G V++  EL   M  +  +PD  T+  +I   ++ G  E A
Sbjct: 370 TVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKA 424



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 117/286 (40%), Gaps = 35/286 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ LM   GK  +  +A  +F  M   G  P   VY  L+S  G+ G +DEA   + DM
Sbjct: 337 TYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 396

Query: 176 KS---VSDCK-------------------------------PDVYTYSILIKSCTKFHRF 201
                + DC+                               PDV TY+ L+    K  R 
Sbjct: 397 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 456

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           D    +  EM          T+ T+ID   KA + E+     + +V+ G   P+ +  N+
Sbjct: 457 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH-APNSYIYNA 515

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS +  SG ++K  + + +        D  T  IL   + R G       ++  M +  
Sbjct: 516 LISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREG 575

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
             P + TYN++I +   AG +E     FK+M  +G  P+  TY +L
Sbjct: 576 HTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 109/273 (39%), Gaps = 36/273 (13%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +T + ++K   K  R +L+ ++LAE+   G+  S VT    I  +G+A   +      
Sbjct: 17  DAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMGML 76

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M     C PD     + +              W  E     V+   Q + +       
Sbjct: 77  DDMRRGNFCQPDTVAFTAAM-------------HWLCE-----VRRVEQAMTL------- 111

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSI 362
              +D MR   D        P VV YN +I  + KAG  ++  + F+++K  G  KPN++
Sbjct: 112 ---FDDMRETCDCA------PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAV 162

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           ++ +LV    K        ++ +++  + +  D    N +I    + G + +   L   M
Sbjct: 163 SFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM 222

Query: 423 KERHCVPDNITFATMIQAYNALG-MTEAAQNLE 454
               C  D  T+  ++ A+   G M E A  +E
Sbjct: 223 TAHACARDAFTYGILVNAHCRAGQMHEVASFME 255



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+  D  T   + K   + G  + +  ++  ++++    + VT    I+ FG+AG ++  
Sbjct: 13  GLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAA 72

Query: 346 EEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCI 402
                 M+ RG   +P+++ + + +    +   + +  ++   + E  D   D   +N +
Sbjct: 73  MGMLDDMR-RGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTL 131

Query: 403 ISAYGQAGDVEKMGELFLTMK-ERHCVPDNITFATMI 438
           I+ Y +AGD ++  ++F  +K E  C P+ ++F T++
Sbjct: 132 IAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLV 168


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 168/341 (49%), Gaps = 4/341 (1%)

Query: 121 MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           M++ G C+    ++A+ + E+M  + L P+V  Y  LV+ +   G +DEAF   ++M+ +
Sbjct: 288 MLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKM 347

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            +  PDV TY+ LI  C+++     +  ++ EM   G++C+AVTYN I+    K     E
Sbjct: 348 -NVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTE 406

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             ++   M E  G  PD  T N++I AY  +G + K  +  +E    G+K D  TLN + 
Sbjct: 407 ATTTLDKM-EENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTIL 465

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                    D+  +++    KR +    V+Y I+I  + K    ++    + +MK R + 
Sbjct: 466 HCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIM 525

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P++ITY S++    ++  + +    L ++  + ++ D   +N II  +   G+VEK  + 
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQF 585

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              M E    PD  T   +++     GM E A  L N +++
Sbjct: 586 HNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVS 626



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 178/389 (45%), Gaps = 14/389 (3%)

Query: 78  PKPVLEALDEAI----KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA 133
           P+P  E LD +I    +  +  LA +IF  +++   Y+    T   LM  L   + P  +
Sbjct: 136 PEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLN-YRPNLLTCNTLMNSL--VRYPSSS 192

Query: 134 SLLF-EVMLSDGLK----PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           S+L    +L D +K    P+ + +  L+  Y     + +A   +N M     C PD  +Y
Sbjct: 193 SILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFG-CVPDTVSY 251

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + ++ +  K         +L +M   G+  +  TYN ++ GY +    +E       M  
Sbjct: 252 NTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTR 311

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           +    P ++T N +++ + N G I++  +  +E   M V  D+ T N L     +     
Sbjct: 312 NN-LLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSS 370

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           ++ S+++ M K+      VTYNI+++   K G++ +      KM+  G+ P+ +TY +L+
Sbjct: 371 EVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLI 430

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
            AY KAG + K   ++ ++ +  + +DT   N I+        +++   L  +  +R  +
Sbjct: 431 GAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYI 490

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
            D +++  +I  Y      + A NL ++M
Sbjct: 491 LDEVSYGILILGYFKDEKGDRALNLWDEM 519



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 151/340 (44%), Gaps = 4/340 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           +W+ + +++ L+ +      +C   T  +++   CK+    +A+   + M  +GL P   
Sbjct: 365 QWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCV 424

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L+ AY ++G + +AF  +++M S    K D +T + ++       + D    +L  
Sbjct: 425 TYNTLIGAYCKAGKMGKAFRMMDEMTS-KGLKIDTWTLNTILHCLCVEKKLDEAYNLLCS 483

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            S  G     V+Y  +I GY K +K +   + +  M E     P   T NS+I     S 
Sbjct: 484 ASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQ-IMPSTITYNSVIGGLCQSR 542

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++     NE    G+  D  T NI+   +   G  +K     + M +  F P V T N
Sbjct: 543 KVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCN 602

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I++    + G +EK  + F  +  +G   + +TY +++S+  K G       +L ++E  
Sbjct: 603 ILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAK 662

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            +  D   +  II+A   AG +++  E  L M E   V D
Sbjct: 663 KLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 36/205 (17%), Positives = 89/205 (43%), Gaps = 3/205 (1%)

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM---RSVMD 315
           L++ I AY          + +N+   +  + ++ T N L  S  R      +   R V+ 
Sbjct: 143 LDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLK 202

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
              K    P   ++NI+I  +     ++   ++  KM   G  P++++Y +++ A  K  
Sbjct: 203 DSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRR 262

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           L+ +   +L  +++  +  +   +N ++  Y + G +++  ++   M   + +P   T+ 
Sbjct: 263 LLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYN 322

Query: 436 TMIQAYNALGMTEAAQNLENKMIAM 460
            ++  +   G  + A  + ++M  M
Sbjct: 323 MLVNGFCNDGKIDEAFRIRDEMEKM 347


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 177/370 (47%), Gaps = 7/370 (1%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W L  ++F L  +   Y     TF  ++ +L K  + ++A      M + G+KP+V  Y 
Sbjct: 221 WVLYAEMFRLKIKSTVY-----TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYN 275

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++  Y   G ++ A   ++ MK+    +PD YTY  LI    K  + +    IL +M  
Sbjct: 276 TVIHGYCSRGRVEGARMVLDIMKN-RGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKE 334

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G+  +AVTYNT+IDGY       +       MV      P + T N +I A    G ++
Sbjct: 335 IGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRA-ILPTVSTYNLLIHALFLEGKMD 393

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           + +    +    G+  D  T NIL   Y R G   K  ++ D M  +   PT+VTY  +I
Sbjct: 394 EADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI 453

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
               K   ++  ++ F+K+   G  P+ I + +L+  +   G + +  ++L++++  +++
Sbjct: 454 YVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIV 513

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N ++    + G VE+  EL   MK R   PD+I++ T+I  Y+  G    A  +
Sbjct: 514 PDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTI 573

Query: 454 ENKMIAMKEN 463
            ++M+++  N
Sbjct: 574 RDEMLSIGFN 583



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 156/326 (47%), Gaps = 5/326 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G K S+ V+  L+ A  +    D+AF   + MK      P + T++ ++    K ++ + 
Sbjct: 162 GTKSSI-VFDMLIRACCELKRGDDAFECFDMMKE-KGVVPKIETFNAMLSLFLKLNQTET 219

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           +  + AEM  L I+ +  T+N +I+   K  K ++ +    +M E+ G  P++ T N++I
Sbjct: 220 VWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM-ENLGVKPNVVTYNTVI 278

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             Y + G +E      +     GV+ D  T   L     + G  ++   +++ M++    
Sbjct: 279 HGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLL 338

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT VTYN +I+ +   G + K   Y  +M  R + P   TY  L+ A    G + + D +
Sbjct: 339 PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGM 398

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           ++ + +S ++ D+  +N +I+ Y + G+ +K   L   M  +   P  +T+ ++I   + 
Sbjct: 399 IKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSK 458

Query: 444 LGMTEAAQNLENKMIAMKENSGKKLI 469
               +AA +L  K+I  +E +   LI
Sbjct: 459 RNRMKAADDLFEKII--REGASPDLI 482



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 119/272 (43%), Gaps = 2/272 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M+   + P+V  Y  L+ A    G +DEA   I DM   S   PD  TY+ILI    +  
Sbjct: 367 MVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGD-SGIVPDSITYNILINGYCRCG 425

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                  +  EM   GI+ + VTY ++I    K  + +  +  F  ++  G   PD+   
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGAS-PDLIMF 484

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N++I  +  +GN+++      E +   +  D  T N L +   R G  ++ R ++  M++
Sbjct: 485 NALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKR 544

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R   P  ++YN +I  + K G I        +M   G  P  +TY +L+    K      
Sbjct: 545 RGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDL 604

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
            + +L+++ +  +  D   +  +I   G+  D
Sbjct: 605 AEELLKEMVSKGITPDDSTYFSLIEGIGKVDD 636



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 10/248 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  + + M   G+ P    Y  L++ Y + G   +AF+  ++M S    +P + TY+ 
Sbjct: 393 DEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMIS-KGIQPTLVTYTS 451

Query: 191 LIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           LI   +K +R     DL EKI+ E    G     + +N +IDG+      +   +    M
Sbjct: 452 LIYVLSKRNRMKAADDLFEKIIRE----GASPDLIMFNALIDGHCANGNLDRAFALLKEM 507

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            +     PD  T N+++      G +E+  +   E    G++ D  + N L   Y + G 
Sbjct: 508 -DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGD 566

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            +   ++ D M    F PT++TYN +I+   K    +  EE  K+M  +G+ P+  TY S
Sbjct: 567 INDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFS 626

Query: 367 LVSAYSKA 374
           L+    K 
Sbjct: 627 LIEGIGKV 634



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           + F LL++           T   +M G+C++   E+A  L + M   G++P    Y  L+
Sbjct: 499 RAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLI 558

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S Y + G +++AF+  ++M S+    P + TY+ LI+   K  + DL E++L EM   GI
Sbjct: 559 SGYSKRGDINDAFTIRDEMLSIG-FNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESS 242
                TY ++I+G GK     E   S
Sbjct: 618 TPDDSTYFSLIEGIGKVDDSSEASDS 643


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 10/374 (2%)

Query: 88  AIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS-DGLK 146
           A+ +  W+ AL  F  L +     +R      + V+LG   +  Q S+  EV L   G  
Sbjct: 164 AVGESSWRRALDAFEWLARSSAPASRA-----VAVVLGVLGRARQDSIAEEVFLRFAGEG 218

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLI 204
            +V V+ A++  Y +SG  D+A   ++ M       PD+ +++ LI + +K       + 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHD-RGIDPDLVSFNTLINARSKSGCLAAGVA 277

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L E+   G+    +TYNT+I    ++   E+  + F  M+ S  C PD++T N+M+S
Sbjct: 278 LDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASE-CRPDLWTYNAMVS 336

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +G  G  E+ E+ + E    G   D  T N L  ++ + G  DK+    + + K  F  
Sbjct: 337 VHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKK 396

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             +TYN +I  +GK G ++     + +M+  G  P+++TY  ++ +  K   I +   +L
Sbjct: 397 NEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             + ++ +      F+ +I AY + G        F  M      PD + +  M+  +   
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 445 GMTEAAQNLENKMI 458
           G TE    L  KM+
Sbjct: 517 GDTEKMLCLYRKMM 530



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 3/289 (1%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LLFEV  S GL+P V  Y  L+SA  QS  L++A +   DM + S+C+PD++TY+ ++  
Sbjct: 280 LLFEVRQS-GLRPDVITYNTLISACSQSSNLEDAVTVFEDMIA-SECRPDLWTYNAMVSV 337

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +  + +  E++  E+   G    A+TYN+++  + K    +++E +   +V++G    
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +I T N+MI  YG  G ++     Y+E   MG   D  T  ++  S G+     +   V+
Sbjct: 398 EI-TYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M      PT++ ++ +I  + K G     E  F  M   G+KP+ + Y  ++  ++++
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           G   K+  + R++ N +   D   +  ++ A  +    E++ E+   M+
Sbjct: 517 GDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 11/337 (3%)

Query: 125  GKCKQPEQASLLFEVMLSDGLKPS--VD--VYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
            GK K  +QA +L +     GL+ +  +D  ++ AL+ AY +SGL ++A +  ++M     
Sbjct: 757  GKIKLWQQAEILVK-----GLRQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGP 811

Query: 181  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
              P V + + ++++     R D +  ++ E+  +  + S  T   ++D + KA    E+ 
Sbjct: 812  L-PTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVM 870

Query: 241  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              ++ M ++ G  P++    SMIS   +      +E    E    G K D+  LN L   
Sbjct: 871  KIYNGM-KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
            Y  AG +D+   V   + +    P   TYN +I  + ++   E+      +M  RG+ P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 361  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
              +Y SL++A +KA L  + D I  ++ +    L+   ++ ++  Y  AG+  K   L  
Sbjct: 990  LQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 421  TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             MKE    P   T   ++ +Y   G    A+N+ N +
Sbjct: 1050 VMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNL 1086



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 162/385 (42%), Gaps = 37/385 (9%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  +   LRQ      R   +  L+    +    E+A  +F+ M+  G  P+V
Sbjct: 758  KIKLWQQAEILVKGLRQASGIDRR--IWNALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSV------------------------------- 178
            D    ++ A    G LDE +  + +++ +                               
Sbjct: 816  DSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNG 875

Query: 179  ---SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +   P+++ Y  +I      +RF  +E ++AEM   G +      N +++ Y  A  
Sbjct: 876  MKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGN 935

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            F+     + +++E+G   PD  T N++I  Y  S   E+     NE    G+   +Q+  
Sbjct: 936  FDRTTQVYRSILEAG-LEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYK 994

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
             L  +  +A + ++   + + M+ + +      Y+++++ +  AG+  K E     MK  
Sbjct: 995  SLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKED 1054

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            G++P   T   L+++Y  AG   + +++L  +++S + + T  ++ +  AY + GD    
Sbjct: 1055 GIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHG 1114

Query: 416  GELFLTMKERHCVPDNITFATMIQA 440
                L MK     PD+  +   I+A
Sbjct: 1115 TTKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 37/212 (17%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK- 344
           G  A +Q  N +   Y R+G +D  R ++D M  R   P +V++N +I    K+G +   
Sbjct: 216 GEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG 275

Query: 345 -MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
              +   +++  G++P+ ITY +L+SA S++  +    ++   +  S+   D   +N ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPD--------------------------------- 430
           S +G+ G  E+   LF  + E+  +PD                                 
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 431 --NITFATMIQAYNALGMTEAAQNLENKMIAM 460
              IT+ TMI  Y  +G  + A  L ++M AM
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM 427



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 156/406 (38%), Gaps = 73/406 (17%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN--------D 174
           ML K +   Q + L +     G KP +    ++++AY  +   +E  S +          
Sbjct: 578 MLIKARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFS 637

Query: 175 MKSVSDCK-------------------------PD--VYTYSILIKSCTKFHRFDLIEKI 207
              +S+C                          PD     Y  LI    +   F    ++
Sbjct: 638 QDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEACQV 697

Query: 208 LAEMSYLGIECSAVTYNT------------------------------------IIDGYG 231
             +M ++GIE S   Y +                                    II+ YG
Sbjct: 698 FCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYG 757

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K K +++ E     + ++ G    I+  N++I AY  SG  EK    ++     G    +
Sbjct: 758 KIKLWQQAEILVKGLRQASGIDRRIW--NALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            ++N + ++    G  D++  V++ +Q   F  +  T  ++++ F KAG + ++ + +  
Sbjct: 816 DSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNG 875

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G  PN   Y S++S          V+ ++ ++E +    D    N +++ Y  AG+
Sbjct: 876 MKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGN 935

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++  +++ ++ E    PD  T+ T+I  Y      E    L N+M
Sbjct: 936 FDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 125/325 (38%), Gaps = 12/325 (3%)

Query: 121 MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +VML    +    E+   L+  M++D  +P  D+Y  L+ A  +    +E    I DM+ 
Sbjct: 507 LVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMEL 566

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           +      + +  ++   C          K+L +    G +    +  +I++ Y   +K E
Sbjct: 567 LCRMNLGIISTMLIKARCVSQG-----AKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHE 621

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E  S    + E      D+ +  S++       +I   E++     L     +      L
Sbjct: 622 EGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYL 681

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
                 A  + +   V   MQ      +   Y  +I T+ K G  E            G+
Sbjct: 682 ITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGI 741

Query: 358 KPNSITYCS--LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            P +I  C   ++ AY K  L  + + +++ +  +  I D   +N +I AY ++G  EK 
Sbjct: 742 -PLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGI-DRRIWNALIHAYAESGLYEKA 799

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             +F  M +   +P   +   M++A
Sbjct: 800 RAVFDNMIKTGPLPTVDSVNGMMRA 824


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 11/344 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+ A  ++  L++A + ++ M+
Sbjct: 228 YSILIHALGRSEKLYEAFLLSQ---RQTLTPLT--YNALIGACARNDDLEKALNLMSRMR 282

Query: 177 SVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              D  P D   YS +I+S T+ ++ D  +++KI AE+    IE      N II G+ K+
Sbjct: 283 R--DGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKS 340

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                   SF AMV+  G  P   TL ++I+A GN+G  E+ E  + E    G+    + 
Sbjct: 341 GDVNRA-MSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRA 399

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L K Y + G      S++  M++  F P   TY+++I+ +  AG  E      K+M+
Sbjct: 400 YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEME 459

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++PNS  +  ++++Y   G   K   +LR++ NS V  D  F+N +I  +G+   ++
Sbjct: 460 ASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLD 519

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                F  M+     PD +T+ T+I  +   G    A+ L   M
Sbjct: 520 HALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM 563



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 161/358 (44%), Gaps = 34/358 (9%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
           +  T   ++  LG   + E+A  +FE +   GL P    Y AL+  Y ++G L +A S +
Sbjct: 361 KTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIV 420

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++M+  S   PD +TYS+LI +     R++    +L EM   G+  ++  ++ I+  Y  
Sbjct: 421 SEMER-SGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRD 479

Query: 233 AKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
             K+++   SF  + E  + G  PD    N MI  +G    ++     ++   + GV+ D
Sbjct: 480 RGKWQK---SFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPD 536

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA----------- 339
             T N L   + ++G ++K   + + MQ+    P   TYNI+I +FG+            
Sbjct: 537 AVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLG 596

Query: 340 -----------------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                            G  E+    F+ M+  G+KP+ +   SL++A+ +     +  S
Sbjct: 597 KMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFS 656

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +L+ ++ +D+  D   +  ++ A  +    +K+  ++  M    C PD    A +  A
Sbjct: 657 VLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSA 714



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 9/311 (2%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           SD ++    +   ++  + +SG ++ A S +  M   +   P   T   +I +     R 
Sbjct: 320 SDKIELDGQLLNDIIVGFAKSGDVNRAMSFLA-MVQGNGLSPKTATLVAVITALGNAGRT 378

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +  E I  E+   G+      YN ++ GY K    ++ ES  S M E  G  PD  T + 
Sbjct: 379 EEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEM-ERSGFSPDEHTYSL 437

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I AY N+G  E       E    GV+ +    + +  SY   G + K   V+  M+   
Sbjct: 438 LIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSG 497

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P    YN++I+TFGK   ++     F +M+  G++P+++T+ +L+  + K+G   K +
Sbjct: 498 VSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAE 557

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   ++ S     T  +N +I+++G+    E +  L   M+ +  + + +T+ T     
Sbjct: 558 ELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT----- 612

Query: 442 NALGMTEAAQN 452
             LG++E A N
Sbjct: 613 --LGLSEQAIN 621



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 9/126 (7%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q++W+    + G + Q Q   A   T+T L +        EQA   F VM +DGLKPSV
Sbjct: 584 EQERWEDVKTLLGKM-QSQGLLANVVTYTTLGL-------SEQAINAFRVMRADGLKPSV 635

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            V  +L++A+G+     EAFS +  MK  +D KPDV TY+ L+K+  +  +FD +  +  
Sbjct: 636 LVLNSLINAFGEDRRDAEAFSVLQYMKE-NDLKPDVVTYTTLMKALIRVEKFDKVPAVYE 694

Query: 210 EMSYLG 215
           EM+  G
Sbjct: 695 EMTLSG 700



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/273 (18%), Positives = 115/273 (42%), Gaps = 22/273 (8%)

Query: 203 LIEKILAEMSYLGIECSAVT--------------YNTIIDGYGKAKKFEEMESSFSAMVE 248
           L++ + ++ S +G   S VT              Y+ +I   G+++K       + A + 
Sbjct: 194 LLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKL------YEAFLL 247

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S        T N++I A   + ++EK     +     G  +D    + + +S  R    D
Sbjct: 248 SQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSD 307

Query: 309 K--MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
              ++ +   ++           N +I  F K+G + +   +   ++  G+ P + T  +
Sbjct: 308 SSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVA 367

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           +++A   AG   + ++I  +++   ++  T  +N ++  Y + G ++    +   M+   
Sbjct: 368 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 427

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             PD  T++ +I AY   G  E+A+ +  +M A
Sbjct: 428 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEA 460


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 190/415 (45%), Gaps = 25/415 (6%)

Query: 77  WPKPVLEALDEAIKQKKWQLALKIFGLLRQQ------------QWYQARCQTFTKLMVML 124
           W    L + +E I  +  +L ++I G   Q             + Y    + +T ++   
Sbjct: 160 WAILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAY 219

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKP 183
            +  + E+A  +FE M   GL P++  Y  ++  YG+ G   ++    +++M+S +  + 
Sbjct: 220 SRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRS-NGLEF 278

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +T S +I +C +    D   K  A +   G      TYN+++  +GKA  + E  S  
Sbjct: 279 DEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSIL 338

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E   C PD+ T N +++AY  +G  E+   + +     G+  +  T   +  +YG+
Sbjct: 339 KEM-EKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGK 397

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG  DK  S    M++    P V TYN ++   GK   +E+M +    M+  G  PNS+T
Sbjct: 398 AGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVT 457

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFL 420
           + ++++     G+   V+ + R++++     +   FN +I AYG+ G   DV KM E  +
Sbjct: 458 WNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMI 517

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQC 471
                 CV    T+  ++ A    G  EAA+    ++++K     E S   ++ C
Sbjct: 518 KAGFTPCV---TTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC 569



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 174/402 (43%), Gaps = 48/402 (11%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W    KI GLL + +        FT   V+   G+    ++A   F  + S+G     
Sbjct: 259 RSWN---KILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGT 315

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK--FHR--FDLIE 205
             Y +L+  +G++G+  EA S + +M+  ++C PD+ TY+ L+ +  +  FH    D I+
Sbjct: 316 FTYNSLLQVFGKAGIYSEALSILKEMEK-NNCPPDLVTYNELVAAYVRAGFHEEGADFID 374

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------- 250
            ++ +    GI  +A+TY T+I+ YGKA K ++  S F  M ESG               
Sbjct: 375 TMIRK----GIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGML 430

Query: 251 -------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
                              GC P+  T N+M++  GN G  + + + + E    G + + 
Sbjct: 431 GKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNR 490

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L  +YGR G    +  + + M K  F P V TYN ++    + G  E  E     
Sbjct: 491 DTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILD 550

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK +G KPN  +Y  +++ Y+K G    ++ I  ++ N  +         ++ A  +   
Sbjct: 551 MKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRA 610

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +  M   F    +    PD + F +M+  +    M + A  +
Sbjct: 611 LMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEM 652



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 176/380 (46%), Gaps = 38/380 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    E+ +   + M+  G+ P+   YT +++AYG++G  D+A S    M
Sbjct: 352 TYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S C P+V TY+ ++    K  R + +  +L +M   G   ++VT+NT++   G    
Sbjct: 412 KE-SGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +   F  M +S G  P+  T N++I AYG  G+   + K Y E    G    + T N
Sbjct: 471 HKYVNRVFREM-KSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYN 529

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEE----- 347
            L  +  R G ++   SV+  M+ + F P   +Y++++  + K G+   IEK+EE     
Sbjct: 530 ALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNG 589

Query: 348 ---------------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                       F++    G KP+ + + S++S ++K  +  + 
Sbjct: 590 HIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRA 649

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +LR +  S +  D   +N ++  Y + G+  K  E+   +++    PD +++ T+I+ 
Sbjct: 650 HEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKG 709

Query: 441 YNALG-MTEAAQNLENKMIA 459
           +   G M EA + L    I+
Sbjct: 710 FCRQGLMQEAIRTLSEMTIS 729



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 155/329 (47%), Gaps = 8/329 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ M G     +  + +F  M S G +P+ D + AL+ AYG+ G   +      +M
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEM 516

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GK 232
              +   P V TY+ L+ +  +   ++  E ++ +M   G + +  +Y+ +++ Y   G 
Sbjct: 517 IK-AGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN 575

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            +  E++E      + +G   P    L +++ A      +  ME+ + EF   G K D+ 
Sbjct: 576 GRGIEKIEEE----IYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLV 631

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N +   + +  MYD+   ++  +++    P +VTYN +++ + + G   K EE  K +
Sbjct: 632 LFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGI 691

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G KP+ ++Y +++  + + GL+ +    L ++  S +      +N  ++ Y   G  
Sbjct: 692 QKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMF 751

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++ E+   M +  C P+ +T+  ++  Y
Sbjct: 752 SEVEEVISYMIQHDCRPNELTYKIVVDGY 780



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 167/379 (44%), Gaps = 39/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   GK  + ++A   F  M   G  P+V  Y A++   G+   L+E    + DM
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S + C P+  T++ ++  C        + ++  EM   G E +  T+N +I  YG+   
Sbjct: 447 RS-NGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             ++   +  M+++G   P + T N++++A    G+ E  E    +    G K +  + +
Sbjct: 506 QIDVVKMYEEMIKAG-FTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 296 ILTKSYGRAG-----------MYD------------------KMRSVMDFMQKRF----- 321
           ++   Y + G           +Y+                  K R++M  M++ F     
Sbjct: 565 LMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMG-MERAFQEFCK 623

Query: 322 --FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P +V +N ++  F K    ++  E  + ++  G++P+ +TY SL+  Y++ G   K
Sbjct: 624 HGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWK 683

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            + IL+ ++ S    D   +N +I  + + G +++       M      P  +T+ T + 
Sbjct: 684 GEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVA 743

Query: 440 AYNALGMTEAAQNLENKMI 458
            Y+  GM    + + + MI
Sbjct: 744 GYSGKGMFSEVEEVISYMI 762



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 122/300 (40%), Gaps = 37/300 (12%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    TF  L+   G+C        ++E M+  G  P V  Y AL++A  + G  + A 
Sbjct: 486 FEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAE 545

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM------------------ 211
           S I DMKS    KP+  +YS+++    K      IEKI  E+                  
Sbjct: 546 SVILDMKS-KGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLA 604

Query: 212 -----SYLGIE------C------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
                + +G+E      C        V +N+++  + K K ++        + ESG   P
Sbjct: 605 NFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG-LQP 663

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+ T NS++  Y   G   K E+        G K D+ + N + K + R G+  +    +
Sbjct: 664 DLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTL 723

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M      P +VTYN  +  +   G   ++EE    M     +PN +TY  +V  Y K 
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKG 783


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 10/374 (2%)

Query: 88  AIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS-DGLK 146
           A+ +  W+ AL  F  L +     +R      + V+LG   +  Q S+  EV L   G  
Sbjct: 164 AVGESSWRRALDAFEWLARSSAPASRA-----VAVVLGVLGRARQDSIAEEVFLRFAGEG 218

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLI 204
            +V V+ A++  Y +SG  D+A   ++ M       PD+ +++ LI + +K       + 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHD-RGIDPDLVSFNTLINARSKSGCLAAGVA 277

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L E+   G+    +TYNT+I    ++   E+  + F  M+ S  C PD++T N+M+S
Sbjct: 278 LDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASE-CRPDLWTYNAMVS 336

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +G  G  E+ E+ + E    G   D  T N L  ++ + G  DK+    + + K  F  
Sbjct: 337 VHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKK 396

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             +TYN +I  +GK G ++     + +M+  G  P+++TY  ++ +  K   I +   +L
Sbjct: 397 NEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             + ++ +      F+ +I AY + G        F  M      PD + +  M+  +   
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 445 GMTEAAQNLENKMI 458
           G TE    L  KM+
Sbjct: 517 GDTEKMLCLYRKMM 530



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 3/289 (1%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LLFEV  S GL+P V  Y  L+SA  QS  L++A +   DM + S+C+PD++TY+ ++  
Sbjct: 280 LLFEVRQS-GLRPDVITYNTLISACSQSSNLEDAVTVFEDMIA-SECRPDLWTYNAMVSV 337

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +  + +  E++  E+   G    A+TYN+++  + K    +++E +   +V++G    
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +I T N+MI  YG  G ++     Y+E   MG   D  T  ++  S G+     +   V+
Sbjct: 398 EI-TYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M      PT++ ++ +I  + K G     E  F  M   G+KP+ + Y  ++  ++++
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           G   K+  + R++ N +   D   +  ++ A  +    E++ E+   M+
Sbjct: 517 GDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 11/337 (3%)

Query: 125  GKCKQPEQASLLFEVMLSDGLKPS--VD--VYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
            GK K  +QA +L +     GL+ +  +D  ++ AL+ AY +SGL ++A +  ++M     
Sbjct: 757  GKIKLWQQAEILVK-----GLRQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGP 811

Query: 181  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
              P V + + ++++     R D +  ++ E+  +  + S  T   ++D + KA    E+ 
Sbjct: 812  L-PTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVM 870

Query: 241  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
              ++ M ++ G  P++    SMIS   +      +E    E    G K D+  LN L   
Sbjct: 871  KIYNGM-KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
            Y  AG +D+   V   + +    P   TYN +I  + ++   E+      +M  RG+ P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 361  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
              +Y SL++A +KA L  + D I  ++ +    L+   ++ ++  Y  AG+  K   L  
Sbjct: 990  LQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 421  TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             MKE    P   T   ++ +Y   G    A+N+ N +
Sbjct: 1050 VMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNL 1086



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 162/385 (42%), Gaps = 37/385 (9%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A  +   LRQ      R   +  L+    +    E+A  +F+ M+  G  P+V
Sbjct: 758  KIKLWQQAEILVKGLRQASGIDRR--IWNALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSV------------------------------- 178
            D    ++ A    G LDE +  + +++ +                               
Sbjct: 816  DSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNG 875

Query: 179  ---SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +   P+++ Y  +I      +RF  +E ++AEM   G +      N +++ Y  A  
Sbjct: 876  MKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGN 935

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            F+     + +++E+G   PD  T N++I  Y  S   E+     NE    G+   +Q+  
Sbjct: 936  FDRTTQVYRSILEAG-LEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYK 994

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
             L  +  +A + ++   + + M+ + +      Y+++++ +  AG+  K E     MK  
Sbjct: 995  SLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKED 1054

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            G++P   T   L+++Y  AG   + +++L  +++S + + T  ++ +  AY + GD    
Sbjct: 1055 GIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHG 1114

Query: 416  GELFLTMKERHCVPDNITFATMIQA 440
                L MK     PD+  +   I+A
Sbjct: 1115 TTKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 37/212 (17%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK- 344
           G  A +Q  N +   Y R+G +D  R ++D M  R   P +V++N +I    K+G +   
Sbjct: 216 GEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG 275

Query: 345 -MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
              +   +++  G++P+ ITY +L+SA S++  +    ++   +  S+   D   +N ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPD--------------------------------- 430
           S +G+ G  E+   LF  + E+  +PD                                 
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 431 --NITFATMIQAYNALGMTEAAQNLENKMIAM 460
              IT+ TMI  Y  +G  + A  L ++M AM
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM 427



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/406 (19%), Positives = 155/406 (38%), Gaps = 73/406 (17%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN--------D 174
           ML K +   Q + L +     G KP +    ++++AY  +   +E  S +          
Sbjct: 578 MLIKARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFS 637

Query: 175 MKSVSDCK---------------------------PDVYTYSILIKSCTKFHRFDLIEKI 207
              +S+C                             +   Y  LI    +   F    ++
Sbjct: 638 QDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEYLITCLIEAEFFSEACQV 697

Query: 208 LAEMSYLGIECSAVTYNT------------------------------------IIDGYG 231
             +M ++GIE S   Y +                                    II+ YG
Sbjct: 698 FCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYG 757

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K K +++ E     + ++ G    I+  N++I AY  SG  EK    ++     G    +
Sbjct: 758 KIKLWQQAEILVKGLRQASGIDRRIW--NALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            ++N + ++    G  D++  V++ +Q   F  +  T  ++++ F KAG + ++ + +  
Sbjct: 816 DSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNG 875

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G  PN   Y S++S          V+ ++ ++E +    D    N +++ Y  AG+
Sbjct: 876 MKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGN 935

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++  +++ ++ E    PD  T+ T+I  Y      E    L N+M
Sbjct: 936 FDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 125/325 (38%), Gaps = 12/325 (3%)

Query: 121 MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +VML    +    E+   L+  M++D  +P  D+Y  L+ A  +    +E    I DM+ 
Sbjct: 507 LVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMEL 566

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           +      + +  ++   C          K+L +    G +    +  +I++ Y   +K E
Sbjct: 567 LCRMNLGIISTMLIKARCVSQG-----AKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHE 621

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E  S    + E      D+ +  S++       +I   E++     L     +      L
Sbjct: 622 EGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEYL 681

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
                 A  + +   V   MQ      +   Y  +I T+ K G  E            G+
Sbjct: 682 ITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGI 741

Query: 358 KPNSITYCS--LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            P +I  C   ++ AY K  L  + + +++ +  +  I D   +N +I AY ++G  EK 
Sbjct: 742 -PLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGI-DRRIWNALIHAYAESGLYEKA 799

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             +F  M +   +P   +   M++A
Sbjct: 800 RAVFDNMIKTGPLPTVDSVNGMMRA 824


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 190/415 (45%), Gaps = 25/415 (6%)

Query: 77  WPKPVLEALDEAIKQKKWQLALKIFGLLRQQ------------QWYQARCQTFTKLMVML 124
           W    L + +E I  +  +L ++I G   Q             + Y    + +T ++   
Sbjct: 160 WAILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAY 219

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKP 183
            +  + E+A  +FE M   GL P++  Y  ++  YG+ G   ++    +++M+S +  + 
Sbjct: 220 SRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRS-NGLEF 278

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +T S +I +C +    D   K  A +   G      TYN+++  +GKA  + E  S  
Sbjct: 279 DEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSIL 338

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E   C PD+ T N +++AY  +G  E+   + +     G+  +  T   +  +YG+
Sbjct: 339 KEM-EKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGK 397

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG  DK  S    M++    P V TYN ++   GK   +E+M +    M+  G  PNS+T
Sbjct: 398 AGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVT 457

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFL 420
           + ++++     G+   V+ + R++++     +   FN +I AYG+ G   DV KM E  +
Sbjct: 458 WNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMI 517

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQC 471
                 CV    T+  ++ A    G  EAA+    ++++K     E S   ++ C
Sbjct: 518 KAGFTPCV---TTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC 569



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 174/402 (43%), Gaps = 48/402 (11%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W    KI GLL + +        FT   V+   G+    ++A   F  + S+G     
Sbjct: 259 RSWN---KILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGT 315

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK--FHR--FDLIE 205
             Y +L+  +G++G+  EA S + +M+  ++C PD+ TY+ L+ +  +  FH    D I+
Sbjct: 316 FTYNSLLQVFGKAGIYSEALSILKEMEK-NNCPPDLVTYNELVAAYVRAGFHEEGADFID 374

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------- 250
            ++ +    GI  +A+TY T+I+ YGKA K ++  S F  M ESG               
Sbjct: 375 TMIRK----GIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGML 430

Query: 251 -------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
                              GC P+  T N+M++  GN G  + + + + E    G + + 
Sbjct: 431 GKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNR 490

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L  +YGR G    +  + + M K  F P V TYN ++    + G  E  E     
Sbjct: 491 DTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILD 550

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK +G KPN  +Y  +++ Y+K G    ++ I  ++ N  +         ++ A  +   
Sbjct: 551 MKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRA 610

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +  M   F    +    PD + F +M+  +    M + A  +
Sbjct: 611 LMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEM 652



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 176/380 (46%), Gaps = 38/380 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    E+ +   + M+  G+ P+   YT +++AYG++G  D+A S    M
Sbjct: 352 TYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S C P+V TY+ ++    K  R + +  +L +M   G   ++VT+NT++   G    
Sbjct: 412 KE-SGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +   F  M +S G  P+  T N++I AYG  G+   + K Y E    G    + T N
Sbjct: 471 HKYVNRVFREM-KSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYN 529

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEE----- 347
            L  +  R G ++   SV+  M+ + F P   +Y++++  + K G+   IEK+EE     
Sbjct: 530 ALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNG 589

Query: 348 ---------------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                       F++    G KP+ + + S++S ++K  +  + 
Sbjct: 590 HIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRA 649

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +LR +  S +  D   +N ++  Y + G+  K  E+   +++    PD +++ T+I+ 
Sbjct: 650 HEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKG 709

Query: 441 YNALG-MTEAAQNLENKMIA 459
           +   G M EA + L    I+
Sbjct: 710 FCRQGLMQEAIRTLSEMTIS 729



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 155/329 (47%), Gaps = 8/329 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ M G     +  + +F  M S G +P+ D + AL+ AYG+ G   +      +M
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEM 516

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GK 232
              +   P V TY+ L+ +  +   ++  E ++ +M   G + +  +Y+ +++ Y   G 
Sbjct: 517 IK-AGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN 575

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            +  E++E      + +G   P    L +++ A      +  ME+ + EF   G K D+ 
Sbjct: 576 GRGIEKIEEE----IYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLV 631

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N +   + +  MYD+   ++  +++    P +VTYN +++ + + G   K EE  K +
Sbjct: 632 LFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGI 691

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G KP+ ++Y +++  + + GL+ +    L ++  S +      +N  ++ Y   G  
Sbjct: 692 QKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMF 751

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++ E+   M +  C P+ +T+  ++  Y
Sbjct: 752 SEVEEVISYMIQHDCRPNELTYKIVVDGY 780



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 167/379 (44%), Gaps = 39/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   GK  + ++A   F  M   G  P+V  Y A++   G+   L+E    + DM
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S + C P+  T++ ++  C        + ++  EM   G E +  T+N +I  YG+   
Sbjct: 447 RS-NGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             ++   +  M+++G   P + T N++++A    G+ E  E    +    G K +  + +
Sbjct: 506 QIDVVKMYEEMIKAG-FTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYS 564

Query: 296 ILTKSYGRAG-----------MYD------------------KMRSVMDFMQKRF----- 321
           ++   Y + G           +Y+                  K R++M  M++ F     
Sbjct: 565 LMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMG-MERAFQEFCK 623

Query: 322 --FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P +V +N ++  F K    ++  E  + ++  G++P+ +TY SL+  Y++ G   K
Sbjct: 624 HGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWK 683

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            + IL+ ++ S    D   +N +I  + + G +++       M      P  +T+ T + 
Sbjct: 684 GEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVA 743

Query: 440 AYNALGMTEAAQNLENKMI 458
            Y+  GM    + + + MI
Sbjct: 744 GYSGKGMFSEVEEVISYMI 762



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 122/300 (40%), Gaps = 37/300 (12%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    TF  L+   G+C        ++E M+  G  P V  Y AL++A  + G  + A 
Sbjct: 486 FEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAE 545

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM------------------ 211
           S I DMKS    KP+  +YS+++    K      IEKI  E+                  
Sbjct: 546 SVILDMKS-KGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLA 604

Query: 212 -----SYLGIE------C------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
                + +G+E      C        V +N+++  + K K ++        + ESG   P
Sbjct: 605 NFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG-LQP 663

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+ T NS++  Y   G   K E+        G K D+ + N + K + R G+  +    +
Sbjct: 664 DLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTL 723

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M      P +VTYN  +  +   G   ++EE    M     +PN +TY  +V  Y K 
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKG 783


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 171/350 (48%), Gaps = 8/350 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+   +  L K  + ++   + E M   G+ P V  + +++S   ++  +D+AF     M
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM 248

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKA 233
                C PD  TYSI++ + ++ +R D ++++L  M  +   C     T+N  I    ++
Sbjct: 249 LE-RGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRS 307

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQ 292
            KF   ++    M+ESG   P++ + N +I     SGN++   K   +    G  K D+ 
Sbjct: 308 GKFPLAKNILLGMIESGS-LPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVI 366

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
             N L   + +AG   +   ++  M+ K    P VVTYN +I+   K G +++ +   ++
Sbjct: 367 FFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQE 426

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G KPN +TY +L++ Y+K G+  + +S+  ++       D   +N ++SA+ +AG 
Sbjct: 427 MQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGM 486

Query: 412 VEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           + K   ++  +K +  +C PD IT+  +I  Y     TE    L  +M A
Sbjct: 487 MSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTA 536



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 177/382 (46%), Gaps = 40/382 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L K  + + A  +F+ ML  G  P    Y+ ++    ++  LD     +  M
Sbjct: 224 TFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHM 283

Query: 176 KSV-SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +++ + C  +VYT++  I +  +  +F L + IL  M   G   + ++YN +IDG  K+ 
Sbjct: 284 QAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSG 343

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW---------------- 278
             ++       M++SG C PD+   N++IS +  +G + +  +                 
Sbjct: 344 NVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVT 403

Query: 279 YN--------------------EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           YN                    E   +G K ++ T   L   Y + GMY++  S+ D M 
Sbjct: 404 YNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMS 463

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGL 376
            +  FP ++TYN V+  F KAG + K E  ++++K++     P++ITY  L+  Y +A  
Sbjct: 464 AKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAED 523

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV-EKMGELFLTMKERHCVPDNITFA 435
             +  ++L+++       D+  +N +I+   +  +V  K   ++  M ++ CVP    F 
Sbjct: 524 TEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFN 583

Query: 436 TMIQAYNALGMTEAAQNLENKM 457
           ++++ +   G   +A+++  +M
Sbjct: 584 SLVRLFLRTGDVNSARSMVQEM 605



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 174/384 (45%), Gaps = 41/384 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    + + A L+ + ++ +G  P+   Y+ LV    +   LD+A   I +M
Sbjct: 82  TYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREM 141

Query: 176 -------------------------KSVSDCK-----------PDVYTYSILIKSCTKFH 199
                                     S  +C+           PDV TY+  I    K  
Sbjct: 142 ILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAG 201

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           + D   ++L EM   GI    VT+ +II G  KA + ++    F  M+E  GC PD  T 
Sbjct: 202 KLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLER-GCVPDSLTY 260

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + M+     +  ++ +++       M  G   ++ T N    +  R+G +   ++++  M
Sbjct: 261 SIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGM 320

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGL 376
            +    P +++YN VI+   K+G+++   +  +KM   G  KP+ I + +L+S + KAG 
Sbjct: 321 IESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGR 380

Query: 377 IMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           + +   +L +++  ++ + D   +N +I    + G +++   L   M+   C P+ +T+A
Sbjct: 381 LSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYA 440

Query: 436 TMIQAYNALGMTEAAQNLENKMIA 459
            +I  Y   GM E A++L ++M A
Sbjct: 441 ALINGYAKHGMYEEAESLFDEMSA 464



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 75  NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           NL     L+ +DE ++  +   A  +  +     +  A C++           K P   +
Sbjct: 266 NLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSG----------KFPLAKN 315

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           +L   M+  G  P++  Y  ++    +SG +D+A+     M     CKPDV  ++ LI  
Sbjct: 316 ILLG-MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISG 374

Query: 195 CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
             K  R     ++L EM    I C    VTYNT+IDG  K    ++ +     M ++ GC
Sbjct: 375 FCKAGRLSQAHQLLIEMKAKNI-CVPDVVTYNTLIDGQSKFGSLKQAKLLLQEM-QAVGC 432

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P++ T  ++I+ Y   G  E+ E  ++E +  G   DI T N +  ++ +AGM  K   
Sbjct: 433 KPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEG 492

Query: 313 VMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           V   ++ +  +  P  +TY I+I+ + +A   E+     ++M  RG   +S TY  L++ 
Sbjct: 493 VYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAK 552

Query: 371 YSKAGLI-MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            ++   +  K  ++ +Q+ + D +     FN ++  + + GDV     +   M E+  + 
Sbjct: 553 LAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLV 612

Query: 430 DNITFATMIQAYN 442
           D    A+ ++A N
Sbjct: 613 D----ASNLEALN 621



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 171/388 (44%), Gaps = 47/388 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K ++P  A    + ML  G +P +  Y +L+     +  +D+A   + ++
Sbjct: 47  TYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQEL 106

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK- 234
              +   P+  TYS L+    +  R D    ++ EM   G  C+ V Y   I G+ +A+ 
Sbjct: 107 VR-NGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARC 165

Query: 235 ---KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
              ++E  +     M+ESG   PD+ T N+ IS    +G ++K  +   E +  G+  D+
Sbjct: 166 QSSRYECRDGD--EMIESGRI-PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDV 222

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   +     +A   D    V   M +R   P  +TY+I+++   +A  ++ ++E  + 
Sbjct: 223 VTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEH 282

Query: 352 MK-------------------------------------HRGMKPNSITYCSLVSAYSKA 374
           M+                                       G  PN ++Y  ++    K+
Sbjct: 283 MQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKS 342

Query: 375 GLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNI 432
           G +     + R++ +S     D  FFN +IS + +AG + +  +L + MK ++ CVPD +
Sbjct: 343 GNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVV 402

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIAM 460
           T+ T+I   +  G  + A+ L  +M A+
Sbjct: 403 TYNTLIDGQSKFGSLKQAKLLLQEMQAV 430



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 154/354 (43%), Gaps = 8/354 (2%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y A   T+T L+  L K    + A  L + M   G  P+V  YTAL+    ++    +A 
Sbjct: 6   YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 65

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
            T+  M   S C+PD+ TY+ LI      +R D    +L E+   G   + +TY+T++  
Sbjct: 66  QTVKRMLR-SGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIW 124

Query: 230 YGKAKKFEEMESSFSAMVESGG-CHPDIF--TLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
             + ++ ++       M+  G  C+  ++   +     A   S   E  +   +E    G
Sbjct: 125 NCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDG--DEMIESG 182

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              D+ T N       +AG  DK   +++ M +    P VVT+  +I    KA  I+   
Sbjct: 183 RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAF 242

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR--QVENSDVILDTPFFNCIIS 404
           + FK M  RG  P+S+TY  ++   S+A  +  VD +L   Q   +  +++    N  I 
Sbjct: 243 QVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIG 302

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           A  ++G       + L M E   +P+ +++  +I      G  + A  L  KM+
Sbjct: 303 ALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 356



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 122/279 (43%), Gaps = 3/279 (1%)

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ LI    K    D  + +L +M+  G   + VTY  +IDG  KA++  +   +  
Sbjct: 10  VVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 69

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+ SG C PD+ T NS+I     +  ++       E    G   +  T + L     R 
Sbjct: 70  RMLRSG-CEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRR 128

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK--KMKHRGMKPNSI 362
              D+ R ++  M  R     +V Y   I  F +A       E     +M   G  P+ +
Sbjct: 129 RRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVV 188

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY + +S   KAG + K   +L +++   +  D   F  IIS   +A  ++   ++F  M
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM 248

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            ER CVPD++T++ M+   +     +    +   M AMK
Sbjct: 249 LERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMK 287



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 16/212 (7%)

Query: 101 FGLLRQ-----QQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           FG L+Q     Q+     C+    T+  L+    K    E+A  LF+ M + G  P +  
Sbjct: 414 FGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIIT 473

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           Y  ++SA+ ++G++ +A      +K+  S C PD  TY ILI    +    +    +L E
Sbjct: 474 YNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQE 533

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE---SGGCHPDIFTLNSMISAYG 267
           M+  G  C + TYN +I    K  + EE+ S   A+ +      C P     NS++  + 
Sbjct: 534 MTARGWSCDSYTYNVLI---AKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFL 590

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
            +G++        E N  G   D   L  L K
Sbjct: 591 RTGDVNSARSMVQEMNEKGHLVDASNLEALNK 622



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G  A + T   L     ++G  D  ++++  M      P VVTY  +I+   KA      
Sbjct: 5   GYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDA 64

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAY------SKAGLIMK 379
            +  K+M   G +P+ +TY SL+           AGL+++
Sbjct: 65  IQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQ 104


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 2/344 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  LM  L K  + + A  +FE   +    P V  Y+ L++   ++G LDEA      M
Sbjct: 268 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM 327

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S C+PDV T++ L+    K  R    +++L  M       + +TY+++IDG  K  +
Sbjct: 328 RENS-CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 386

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M+  G   P++ T NS+I  +  +  ++       E    G   DI T N
Sbjct: 387 VRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 445

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     + G   +   +   M+ +F  P V+TY+ +I  F K   I+     F  M  +
Sbjct: 446 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 505

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+ +T+ +LV  Y  AGL+   + +L ++  SD   D   +  ++  + + G + + 
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 565

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             +   M +R C P+ +T+  +I A+   G    A  L  +M+ 
Sbjct: 566 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVG 609



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 161/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  +  +A LL + M   GL P+V  Y+ ++  + +   +D A+     M
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 222

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C P++ TY+ L+    +    D   ++L EM   G++    +Y+T++ G  K  K
Sbjct: 223 VE-NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     F     +G C PD+   +++I+    +G +++  K + +      + D+ T  
Sbjct: 282 IDMALKVFEDN-SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFT 340

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +     + + V++ M+ R   P V+TY+ +I+   K G +   +E FK+M  R
Sbjct: 341 ALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 400

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN +TY SL+  +     +     ++ ++  +  + D   +N +I    + G   + 
Sbjct: 401 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             LF  MK + C PD IT++ +I  +  L   + A+ L + M+
Sbjct: 461 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 503



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 170/374 (45%), Gaps = 15/374 (4%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  K  +ALK+F     +      C      ++ L+  L K  + ++A  LFE M  +  
Sbjct: 278 KTGKIDMALKVF-----EDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSC 332

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V  +TAL+    +   L EA   +  M+   +C P+V TYS LI    K  +    +
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMED-RNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMI 263
           ++   M   GIE + VTYN++I G+        ++S+   M E  + GC PDI T N++I
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNG---VDSALLLMEEMTATGCLPDIITYNTLI 448

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                +G   +  + + +        D+ T + L   + +    D  R++ D M K+   
Sbjct: 449 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 508

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT++ ++E +  AG ++  E   ++M      P+  TY SLV  + K G +++   +
Sbjct: 509 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L+++       +   +  +I A+ +AG       L   M      P+ IT+ ++I  +  
Sbjct: 569 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCG 628

Query: 444 LGMTEAAQNLENKM 457
            G  E A+ +  ++
Sbjct: 629 TGDLEEARKILERL 642



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 161/344 (46%), Gaps = 12/344 (3%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G C+Q   + A  LF  M+ +G  P++  Y  L+S   ++GL+DEA+  +++M+   
Sbjct: 202 VIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRE-R 260

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             +PD ++Y  L+    K  + D+  K+  + S        V Y+T+I G  KA + +E 
Sbjct: 261 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEA 320

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M E+  C PD+ T  +++        +++ ++            ++ T + L  
Sbjct: 321 CKLFEKMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLID 379

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              + G     + V   M  R   P VVTYN +I  F     ++      ++M   G  P
Sbjct: 380 GLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLP 439

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKM 415
           + ITY +L+    K G   + + +   ++    N DVI     ++C+I  + +   ++  
Sbjct: 440 DIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT----YSCLIGGFCKLERIDMA 495

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             LF  M ++  +PD +TF+T+++ Y   G+ + A+ L  +M+A
Sbjct: 496 RTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 539



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 152/326 (46%), Gaps = 3/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K  Q   A  +F+ M+  G++P+V  Y +L+  +  +  +D A   + +M
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 432

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            + + C PD+ TY+ LI    K  R     ++  +M         +TY+ +I G+ K ++
Sbjct: 433 -TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 491

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +   + F  M++     PD+ T ++++  Y N+G ++  E+   E        D+ T  
Sbjct: 492 IDMARTLFDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 550

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G   + R V+  M KR   P VVTY  +I+ F +AG         ++M   
Sbjct: 551 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN 610

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEK 414
           G++PN ITY SL+  +   G + +   IL ++E + +   D   +  ++    + G +  
Sbjct: 611 GVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSA 670

Query: 415 MGELFLTMKERHCVPDNITFATMIQA 440
             EL   +K+    P +  +  +I+ 
Sbjct: 671 ALELLEAIKQSGTPPRHDIYVALIRG 696



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 162/359 (45%), Gaps = 6/359 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+ F    +QQ +     T+ +L   L + ++ ++   + +     G+ P+V  Y  ++
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               +SG LD+A   + +M+  S   PD   Y+ +I +  K        K L     +  
Sbjct: 67  QGLCKSGDLDKACELLEEMRE-SGPVPDAAIYNFVIHALCKARN---TAKALDYFRSMEC 122

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + +T+  +IDG  KA +  E  + F+ M + G   P+ +T N +I+ +     + +  
Sbjct: 123 EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTV-PNEWTYNVLINGFCKVHKVHRAY 181

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E    G+  ++ T + +   + R    D    +   M +    P +VTYN ++   
Sbjct: 182 LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 241

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            + G +++  E   +M+ RG++P+  +Y +L++   K G I     +     N D   D 
Sbjct: 242 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 301

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLE 454
             ++ +I+   +AG +++  +LF  M+E  C PD +TF  ++        + EA Q LE
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 360



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 2/344 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L K  +  +A+  F  M   G  P+   Y  L++ + +   +  A+  + +M
Sbjct: 128 TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 187

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S   P+V TYS +I    +  + D   K+  +M   G   + VTYNT++ G  +   
Sbjct: 188 KE-SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 246

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       M E G   PD F+ +++++    +G I+   K + + +      D+   +
Sbjct: 247 MDEAYELLDEMRERG-LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 305

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +AG  D+   + + M++    P VVT+  +++   K   +++ ++  + M+ R
Sbjct: 306 TLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR 365

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN ITY SL+    K G +     + +++    +  +   +N +I  +     V+  
Sbjct: 366 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSA 425

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             L   M    C+PD IT+ T+I      G    A  L   M A
Sbjct: 426 LLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 469



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 126/282 (44%), Gaps = 7/282 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+V+TY+++I+   K    D   ++L EM   G    A  YN +I    KA+   +    
Sbjct: 57  PNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDY 116

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F +M     C  ++ T   MI     +  + +   ++ +    G   +  T N+L   + 
Sbjct: 117 FRSM----ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFC 172

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +     +   ++  M++    P VVTY+ VI  F +   ++   + F++M   G  PN +
Sbjct: 173 KVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV 232

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L+S   + GL+ +   +L ++    +  D   ++ +++   + G ++   ++F   
Sbjct: 233 TYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 292

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
               C PD + ++T+I      G  + A  L  K   M+ENS
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK---MRENS 331



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 2/174 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  +P  A  L E M+ +G++P+V  Y +L+  +  +G L+EA   +  +
Sbjct: 583 TYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERL 642

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   +CK D++ Y +++    +  R     ++L  +   G       Y  +I G  + K+
Sbjct: 643 ERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKE 702

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             +       M  S    P+     ++I      G  E+     +E  L+G K 
Sbjct: 703 LGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADE--LLGNKG 754


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 180/387 (46%), Gaps = 8/387 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  +A K+F L+  ++ Y    + +T ++    +  + ++A  LF  M   GL P++
Sbjct: 192 RESQHSIASKLFDLIPVEK-YSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTL 250

Query: 150 DVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  ++  YG+ G   D     +++M+S    + D +T S +I +C +    D   K L
Sbjct: 251 VTYNVMLDVYGKMGRSWDRILELLDEMRS-KGLELDEFTCSTVISACGREGMLDEARKFL 309

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AE+ + G +   VTYN+++  +GKA  + E  S    M E   C PD  T N + + Y  
Sbjct: 310 AELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEM-EDNNCPPDSVTYNELAATYVR 368

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G +++     +     GV  +  T   +  +YG+AG  D    +   M+     P V T
Sbjct: 369 AGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYT 428

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN V+   GK    E + +   +MK  G  PN  T+ ++++  S+ G    V+ +LR+++
Sbjct: 429 YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK 488

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           N     D   FN +ISAY + G      +++  M +    P   T+  ++ A    G  +
Sbjct: 489 NCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWK 548

Query: 449 AA----QNLENKMIAMKENSGKKLIQC 471
           AA    Q++  K     ENS   L+ C
Sbjct: 549 AAESVIQDMRTKGFKPNENSYSLLLHC 575



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 172/383 (44%), Gaps = 10/383 (2%)

Query: 81  VLEALDEAIKQKKWQLALKIF--GLLR--QQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           +L+ALD +     W+ AL +F  G L     Q  +   Q    ++ +LG+  Q   AS L
Sbjct: 146 LLKALDLS---GNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKL 202

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F+++  +     V  YT ++ +Y ++G    A      MK +    P + TY++++    
Sbjct: 203 FDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIG-LDPTLVTYNVMLDVYG 261

Query: 197 KFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           K  R +D I ++L EM   G+E    T +T+I   G+    +E    F A ++  G  P 
Sbjct: 262 KMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEAR-KFLAELKFNGYKPG 320

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T NSM+  +G +G   +      E        D  T N L  +Y RAG  D+  +V+D
Sbjct: 321 TVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVID 380

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  +   P  +TY  VI+ +GKAG  +     F  MK  G  PN  TY S+++   K  
Sbjct: 381 TMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKS 440

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
               V  +L +++ +    +   +N +++   + G    + ++   MK     PD  TF 
Sbjct: 441 RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFN 500

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           T+I AY   G    +  +  +M+
Sbjct: 501 TLISAYARCGSEVDSAKMYGEMV 523



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/429 (21%), Positives = 185/429 (43%), Gaps = 74/429 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   GK  + + A  LF +M   G  P+V  Y ++++  G+    ++    + +M
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--- 232
           K ++ C P+  T++ ++  C++  + + + K+L EM   G E    T+NT+I  Y +   
Sbjct: 453 K-LNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGS 511

Query: 233 ----AKKFEEMESS------------FSAMVESG---------------GCHPDIFTLNS 261
               AK + EM  S             +A+   G               G  P+  + + 
Sbjct: 512 EVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSL 571

Query: 262 MISAYGNSGN---IEKMEK----------W----------------------YNEFNLMG 286
           ++  Y  +GN   IEK+EK          W                      +++    G
Sbjct: 572 LLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYG 631

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            K D+  +N +   + R  M+ K R ++ F+ +    P + TYN +++ + + G   K E
Sbjct: 632 YKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAE 691

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E  K +++ G +P+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y
Sbjct: 692 EVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGY 751

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKE 462
                 ++  E+   M E +C P  +T+  ++  Y   G  E A +  +K+    I+  +
Sbjct: 752 AGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFDD 811

Query: 463 NSGKKLIQC 471
            S K+L  C
Sbjct: 812 QSVKRLGSC 820



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 164/387 (42%), Gaps = 42/387 (10%)

Query: 92  KKWQLALKIFGLLRQQ--QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W   L++   +R +  +  +  C T   ++   G+    ++A      +  +G KP  
Sbjct: 265 RSWDRILELLDEMRSKGLELDEFTCST---VISACGREGMLDEARKFLAELKFNGYKPGT 321

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +++  +G++G+  EA S + +M+  ++C PD  TY+ L  +  +    D    ++ 
Sbjct: 322 VTYNSMLQVFGKAGIYTEALSILKEMED-NNCPPDSVTYNELAATYVRAGFLDEGMAVID 380

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M+  G+  +A+TY T+ID YGKA + ++    FS M + G C P+++T NS+++  G  
Sbjct: 381 TMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLG-CAPNVYTYNSVLAMLGKK 439

Query: 270 GNIEKMEKWYNEFNL-----------------------------------MGVKADIQTL 294
              E + K   E  L                                    G + D  T 
Sbjct: 440 SRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTF 499

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  +Y R G       +   M K  F P V TYN ++    + G  +  E   + M+ 
Sbjct: 500 NTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRT 559

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G KPN  +Y  L+  YSKAG +  ++ + +++ +  V         ++    +   +  
Sbjct: 560 KGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRG 619

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
           M   F  +++    PD +   +M+  +
Sbjct: 620 MERAFDQLQKYGYKPDLVVINSMLSMF 646



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 261 SMISAYGNSGNIEKM-----EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           S++ A   SGN E+        W +  +   ++ D Q + ++ +  GR   +     + D
Sbjct: 145 SLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFD 204

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            +    +   V  Y  ++ ++ + G  ++  + F KMK  G+ P  +TY  ++  Y K G
Sbjct: 205 LIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMG 264

Query: 376 LIM-KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
               ++  +L ++ +  + LD    + +ISA G+ G +++  +    +K     P  +T+
Sbjct: 265 RSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTY 324

Query: 435 ATMIQAYNALGM-TEA 449
            +M+Q +   G+ TEA
Sbjct: 325 NSMLQVFGKAGIYTEA 340


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 4/337 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K     QA  +FE M S+   PS+  Y  L+++   +G   +A      MK     +P
Sbjct: 20  LAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEP 79

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +TY+ LI         +   K+L+EM    I  +  TY++II    K  K EE     
Sbjct: 80  DRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVL 139

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M+ + GC+PD+F  N ++  +  S N+EK  + Y      G K D  + +IL     +
Sbjct: 140 EEMM-AAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198

Query: 304 AGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            G  D+   ++  M  R   + P V+T++ +I    + G +EK  E F  M   G KPN 
Sbjct: 199 IGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNK 258

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY +L++   +A  +++   +  ++  + +  D   +N +I+ Y + G +++  +L+  
Sbjct: 259 YTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYRE 318

Query: 422 MKERHCV-PDNITFATMIQAYNALGMTEAAQNLENKM 457
           M     + P  +TF T+I  +  LG    A  L  +M
Sbjct: 319 MSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEM 355



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 162/341 (47%), Gaps = 5/341 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K  +PE++  + E M++ G  P V  +  ++  + +S  +++A      M
Sbjct: 118 TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 177

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY--LGIECSAVTYNTIIDGYGKA 233
              S  KPD  +Y ILI    K  + D   KIL+EM+    G   + +T++T+I G  + 
Sbjct: 178 VE-SGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRT 236

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + E+    F +M+E+G C P+ +T  ++I+    +  + +  + + +     +  D   
Sbjct: 237 GELEKALEVFGSMLEAG-CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVA 295

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            N L   Y + G  D+   +   M       PT+VT+N +I+ F K G + +  E   +M
Sbjct: 296 YNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEM 355

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G+  ++ TY  L++  S+A  + +   + +Q+     +LD       +    + G++
Sbjct: 356 GTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNI 415

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++   +F   ++   VP+  TF  + ++   LG  E AQ L
Sbjct: 416 DQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 456



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 1/254 (0%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
            M + G  P+V  ++ L+    ++G L++A      M   + CKP+ YTY+ LI    + 
Sbjct: 213 AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE-AGCKPNKYTYTTLIAGLCRA 271

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
            +     ++  +M+   I   AV YN++I GY K    +E E  +  M    G  P I T
Sbjct: 272 EKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVT 331

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N++I  +   G + +  +   E    G+ AD  T  IL     RA   D+   V   M+
Sbjct: 332 FNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMR 391

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           ++ F    V+    +    K G+I++    F+  +  G  PN  T+  L  +  K G + 
Sbjct: 392 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVE 451

Query: 379 KVDSILRQVENSDV 392
               ++   +  D+
Sbjct: 452 DAQKLMEPAKARDI 465



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 38/291 (13%)

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D Y  +V +  ++G+L +A      MKS S C P                          
Sbjct: 11  DAYDFVVQSLAKAGMLAQALEVFETMKSES-CVP-------------------------- 43

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
                    S VTYN +I+    A +F +    F +M       PD +T N++IS   +S
Sbjct: 44  ---------SLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSS 94

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN E   K  +E     + A++ T + + KS  +    ++   V++ M      P V  +
Sbjct: 95  GNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAF 154

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ--V 387
           N V++ F ++ ++EK  E ++ M   G KP++++Y  L+   +K G + +   IL +  +
Sbjct: 155 NGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAM 214

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             +  + +   F+ +I    + G++EK  E+F +M E  C P+  T+ T+I
Sbjct: 215 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 265



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 136/313 (43%), Gaps = 5/313 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  +M    +    E+A  +++ M+  G KP    Y  L+    + G LDE+   +++M
Sbjct: 153 AFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 212

Query: 176 K-SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               +   P+V T+S LI    +    +   ++   M   G + +  TY T+I G  +A+
Sbjct: 213 AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAE 272

Query: 235 KFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQ 292
           K  +    F  M ++  C  PD    NS+I+ Y   G++++ EK Y E +   G++  I 
Sbjct: 273 KVIQARELFEKMTQA--CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIV 330

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   + + G   +   ++  M  +       TY I+I    +A  +++  E +K+M
Sbjct: 331 TFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQM 390

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + +    + ++  S V    K G I +  ++      S  + +   F  +  +  + G V
Sbjct: 391 REKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRV 450

Query: 413 EKMGELFLTMKER 425
           E   +L    K R
Sbjct: 451 EDAQKLMEPAKAR 463



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           AL++FG        +A C+    T+T L+  L + ++  QA  LFE M    + P    Y
Sbjct: 242 ALEVFG-----SMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAY 296

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L++ Y + G +DEA     +M   +  +P + T++ LI    K  +     +++AEM 
Sbjct: 297 NSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMG 356

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+     TY  +I G  +A K +E    +  M E      D  +  S +     +GNI
Sbjct: 357 TKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLL-DPVSCVSFVGGLCKTGNI 415

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++    +      G   + +T  IL++S  + G  +  + +M+  + R
Sbjct: 416 DQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKAR 463


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    +   AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M
Sbjct: 292 TYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKA 233
              S   PD++TYS LI       R D  + +   M  +  +C  + VTYNT+I G+ KA
Sbjct: 352 IKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 408

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K+ EE    F  M + G    +  T N++I     +G+ +  +K + +    GV  DI T
Sbjct: 409 KRVEEGMELFREMSQRG-LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 467

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +IL     + G  +K   V +++QK    P + TYNI+IE   KAG +E   + F  + 
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G+KPN I Y +++S + + GL  + D++ R+++    + D+  +N +I A  + GD  
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKA 587

Query: 414 KMGELFLTMKERHCVPDNITFATMIQ 439
              EL   M+    V D  T + +I 
Sbjct: 588 ASAELIKEMRSCGFVGDASTISMVIN 613



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 173/399 (43%), Gaps = 38/399 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+   A  L + M+  G KP  
Sbjct: 127 RRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 185

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L+          EA + ++ M     C+PD+ TY  ++    K    DL   +L 
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALVDQMVQ-RGCQPDLVTYGAVVNGLCKRGDIDLALSLLK 244

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS----- 264
           +M    IE   V YNTIIDG  K K  ++  + F+ M E+ G  PD+FT NS+IS     
Sbjct: 245 KMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM-ETKGIRPDVFTYNSLISCLCNY 303

Query: 265 ------------------------------AYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                                         A+   G + + EK Y+E     +  DI T 
Sbjct: 304 GRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           + L   +      D+ + + + M  +  FP VVTYN +I+ F KA  +E+  E F++M  
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+  N++TY +L+    +AG       I +++ +  V  D   ++ ++    + G +EK
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEK 483

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              +F  +++    PD  T+  MI+     G  E   +L
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 12/358 (3%)

Query: 107 QQWYQARCQ--TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
            Q  Q  CQ    T   V+ G CK+ +   A  L + M    ++  V +Y  ++    + 
Sbjct: 209 DQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKY 268

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
             +D+AF+  N M++    +PDV+TY+ LI     + R+    ++L+ M    I  + VT
Sbjct: 269 KHIDDAFALFNKMET-KGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVT 327

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           ++ +ID + K  K  E E  +  M++     PDIFT +S+I+ +      +++++  + F
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMH---DRLDEAKHMF 383

Query: 283 NLMGVK---ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            LM  K    ++ T N L K + +A   ++   +   M +R      VTYN +I+   +A
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 443

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G  +  ++ FKKM   G+ P+ ITY  L+    K G + K   +   ++ S +  D   +
Sbjct: 444 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +I    +AG VE   +LF ++  +   P+ I + TMI  +   G+ E A  L  +M
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 2/294 (0%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           LD+A     +M   S   P +  ++ L+ +  K  +FDL+  +   M  L I     +YN
Sbjct: 61  LDDAIGLFGEMVQ-SRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+ + +  +     +    M++  G  PDI TL+S+++ Y +S  I       ++   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 178

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           MG K D  T N L           +  +++D M +R   P +VTY  V+    K G I+ 
Sbjct: 179 MGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDL 238

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                KKM+   ++ + + Y +++    K   I    ++  ++E   +  D   +N +IS
Sbjct: 239 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLIS 298

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                G       L   M ER   P+ +TF+ +I A+   G    A+ L ++MI
Sbjct: 299 CLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 1/245 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K KKF+ +  S    +++     D+++ N +I+ +     +      
Sbjct: 79  SIVEFNKLLSAIAKMKKFD-LVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + DI TL+ L   Y  +       +++D M +  + P  VT+N +I     
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
                +      +M  RG +P+ +TY ++V+   K G I    S+L+++E   +  D   
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +N II    +   ++    LF  M+ +   PD  T+ ++I      G    A  L + MI
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 459 AMKEN 463
             K N
Sbjct: 318 ERKIN 322


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG     ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLSMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++  + + N L + YG A ++ +   +   MQ++    TVVTYN +I  +GK   
Sbjct: 181 MRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G  KQ E+   LF  + S   K  +  Y  +++ Y + G+ +EAF     M+      PD
Sbjct: 409 GDVKQAEE---LFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPD 465

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
            YTY  +++ C K +     E+I   +    +E   V  N +++   +    EE+   F 
Sbjct: 466 SYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQ 525

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M++ G C P+  T N MI  YG SG +++          +GV AD  T + L  SYG+ 
Sbjct: 526 EMIDVG-CIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITFSTLINSYGKK 583

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
             +  M + +  MQ      ++  YN V++ +GKAGH++K+E+   +M+  G++ +  +Y
Sbjct: 584 QDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASY 643

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             L++ Y +   I +++++  +++    I D   +N +I  YG A   +K  + F  M++
Sbjct: 644 NILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQD 703

Query: 425 RHCVPDNITFATMIQAYNALG-MTEAAQ 451
              +PD +T+  ++ A+   G + EAA+
Sbjct: 704 SGIMPDRVTYVMLVAAFEKAGNLLEAAR 731



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 171/408 (41%), Gaps = 73/408 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            + K M   G+  + E+A  + + M   G+   V  Y ++++AYG++GL ++A      M
Sbjct: 152 NWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKM 211

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     +PD  TYS +I +C +  +          M  LGI  ++  +NT+I  YGKA+ 
Sbjct: 212 KEAG-LEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARN 270

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              +    + M ++ GC PD  TL++++ AY  +G  +K+ +  +     G   D ++  
Sbjct: 271 VVGIVRVLADM-KNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYG 329

Query: 296 ILTKSYGR-----------------------------------AGMYDKMRSVMDFMQKR 320
            L   Y +                                   AGM++   +V   MQ  
Sbjct: 330 TLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSA 389

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK--------------------------- 353
              P++ T   +I   G  G +++ EE F+ ++                           
Sbjct: 390 GVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEA 449

Query: 354 ---------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                      G+ P+S TY S++    K  L  + + I  ++ NSDV LD    NC+++
Sbjct: 450 FRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLN 509

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
              +   +E++ ++F  M +  C+P+ ITF  MI  Y   GM + A++
Sbjct: 510 TCARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARD 557



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 162/345 (46%), Gaps = 9/345 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L++   K    + A+  F++ML  G++P+   Y+ ++  Y ++G +++A    + M
Sbjct: 48  TFNTLIMSASKADYADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHM 107

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +      V  YS +I   T+   F+  EKI+ +M    I      +   ++ YG+  K
Sbjct: 108 --LQSGIQVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGK 165

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE E     M E  G H  +   NSMI+AYG +G  EK  + + +    G++ D  T +
Sbjct: 166 IEEAEHIMDTM-ERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYS 224

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQ--KRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            +  + GRAG   K+R  +D+ Q  KR    P    +N +I  +GKA ++  +      M
Sbjct: 225 CMIGACGRAG---KLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADM 281

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K+ G  P+S T  ++V AY +AG   KV  +L  +  +  + DT  +  ++  Y +    
Sbjct: 282 KNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQ 341

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++   +F  M++    P      ++I A    GM E A N+   M
Sbjct: 342 KEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDM 386



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 33/294 (11%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C PD YT++ LI S +K    D   +    M   G++ + +TY+ ++  Y K  K E+ E
Sbjct: 42  CVPDDYTFNTLIMSASKADYADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAE 101

Query: 241 SSFSAMVESG---------------------------------GCHPDIFTLNSMISAYG 267
            +FS M++SG                                    PD       ++ YG
Sbjct: 102 VAFSHMLQSGIQVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYG 161

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G IE+ E   +    +G+   +   N +  +YG+AG+Y+K   + + M++    P  V
Sbjct: 162 QQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEV 221

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY+ +I   G+AG +    +YF+ MK  G+ P S  + +L+S Y KA  ++ +  +L  +
Sbjct: 222 TYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADM 281

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +N     D+   + ++ AY +AG  +K+ ++   ++E   V D  ++ T++  Y
Sbjct: 282 KNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVY 335



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 2/335 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            ++ ++ +  +C   E+A  + E M +  + P  D +   ++ YGQ G ++EA   ++ M
Sbjct: 117 AYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTM 176

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +      V  Y+ +I +  K   ++   ++  +M   G+E   VTY+ +I   G+A K
Sbjct: 177 ERLG-MHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGK 235

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    F AM +  G  P     N++IS YG + N+  + +   +    G   D QTL+
Sbjct: 236 LRDALDYFQAM-KRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLD 294

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + ++Y RAG   K+  V+  +++  +     +Y  ++  + K    ++    F  M+  
Sbjct: 295 AVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKA 354

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM P      SL+ A   AG+     ++ R ++++ V+        +I+ +G  GDV++ 
Sbjct: 355 GMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQA 414

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            ELF +++      D I +  +I  Y   GM E A
Sbjct: 415 EELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEA 449



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 140/284 (49%), Gaps = 3/284 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A +I+ L+ ++        T+  ++ M  KC    QA  ++  + +  ++    +   ++
Sbjct: 449 AFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVL 508

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +   +   L+E      +M  V  C P+  T++++I    K    D           LG+
Sbjct: 509 NTCARFLPLEEVHKIFQEMIDVG-CIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV 567

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
               +T++T+I+ YGK + F  ME++   M ++ G    +   N ++ AYG +G+++K+E
Sbjct: 568 -ADKITFSTLINSYGKKQDFRNMEATLWEM-QNAGHGGSLEAYNCVLDAYGKAGHLDKLE 625

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
                    G++ D+ + NIL   YGR     +M ++   MQ+  F P   TYN +I T+
Sbjct: 626 DVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTY 685

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
           G A + +K  + FK M+  G+ P+ +TY  LV+A+ KAG +++ 
Sbjct: 686 GYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAGNLLEA 729



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 37/309 (11%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM--------SYL------------ 214
           M+     + +VY+Y+I+ K      ++ +I+++L +M         Y             
Sbjct: 1   MQENGKTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKAD 60

Query: 215 ---------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                          G++ + +TY+ ++  Y K  K E+ E +FS M++SG     +   
Sbjct: 61  YADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSG--IQVVAAY 118

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           ++MI+ Y   G  EK EK   +     +  D         +YG+ G  ++   +MD M++
Sbjct: 119 SAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMER 178

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                 VV YN +I  +GKAG  EK    F+KMK  G++P+ +TY  ++ A  +AG +  
Sbjct: 179 LGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRD 238

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
                + ++   ++  +  FN +IS YG+A +V  +  +   MK   C PD+ T   +++
Sbjct: 239 ALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVR 298

Query: 440 AYNALGMTE 448
           AY   G T+
Sbjct: 299 AYERAGQTK 307



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 174/403 (43%), Gaps = 53/403 (13%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
            V+ A + A + KK    +++  LLR+  W +   +++  L+ +  KC   ++A  +F  
Sbjct: 295 AVVRAYERAGQTKK---VVQVLSLLREAGWVE-DTESYGTLLHVYLKCNLQKEALSVFSA 350

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G+ P   +  +L+ A   +G+ ++A +   DM+S     P + T      SCT  +
Sbjct: 351 MRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAG-VVPSLET------SCTMIN 403

Query: 200 RFDLIEKI-LAEMSYLGIECSA-----VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
              L   +  AE  +  +  S      + YN II+ Y +    EE    +  M E  G  
Sbjct: 404 VHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLL 463

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD +T +SM+          + E+ Y       V+ D    N +  +  R    +++  +
Sbjct: 464 PDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKI 523

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              M      P  +T+N++I+ +GK+G +++  +  K  +  G+  + IT+ +L+++Y K
Sbjct: 524 FQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITFSTLINSYGK 582

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK------------------- 414
                 +++ L +++N+        +NC++ AYG+AG ++K                   
Sbjct: 583 KQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLAS 642

Query: 415 ----------------MGELFLTMKERHCVPDNITFATMIQAY 441
                           M  LF  M+E   +PD  T+ TMI+ Y
Sbjct: 643 YNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTY 685


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 164/347 (47%), Gaps = 8/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++ TKLM  L +  +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ 
Sbjct: 320 RSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISK 379

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  +  +PD   ++ +I + ++    D   KI  +M   G + +A T+NT+I GYGK  
Sbjct: 380 VQK-NGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K EE       M+      P+  T N ++ A+ N   IE+      +    GVK D  T 
Sbjct: 439 KLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTF 498

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L ++Y R G      +  D +  R       P V T   ++  + + G +E+   +F 
Sbjct: 499 NTLARAYSRIG---STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 555

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +MK  G+ PN   + SL+  +     +  V  ++  +E   V  D   F+ +++A+   G
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 615

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           D+++  E++  M E    PD   F+ + + Y   G  E A+ + N+M
Sbjct: 616 DMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 149/312 (47%), Gaps = 1/312 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   +  M      +P+  T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNI 465

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++     + +    I+ +M   G++  AVT+NT+   Y +       E      +   
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHN 525

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+D M++    P VVT++ ++  +   G +++ EE ++ M   G+ P+   +  L   
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKG 645

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y++AG   K + IL Q+    V  +   +  IIS +  AG+++K  +++  M+    +  
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSP 705

Query: 431 NI-TFATMIQAY 441
           N+ T+ T+I  +
Sbjct: 706 NLTTYETLIWGF 717



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 175/356 (49%), Gaps = 6/356 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTAL 155
           A+KIF  +++    +    TF  L+   GK  + E++S L E+ML D  L+P+      L
Sbjct: 408 AMKIFEKMKESG-CKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNIL 466

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK-ILAEMSYL 214
           V A+     ++EA++ +  M+S    KPD  T++ L ++ ++       E  I+  M + 
Sbjct: 467 VQAWCNQRKIEEAWNIVYKMQSFG-VKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHN 525

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            ++ +  T  TI++GY +  K EE    F  M E G  HP++F  NS+I  + N  +++ 
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELG-VHPNLFVFNSLIKGFLNINDMDG 584

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
           + +  +     GVK D+ T + L  ++   G   +   +   M +    P +  ++I+ +
Sbjct: 585 VGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAK 644

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVI 393
            + +AG  EK E+   +M+  G++PN + Y  ++S +  AG + K   +  ++  S  + 
Sbjct: 645 GYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLS 704

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            +   +  +I  +G+A    K  EL   M+E++ VP   T   +   + ++G++ +
Sbjct: 705 PNLTTYETLIWGFGEAKQPWKAEELLKEMEEKNVVPTRKTMQLIADGWKSIGVSNS 760



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 11/374 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           I++ + Q A  IF  L ++  ++    T+T L+  L + K       L   +  +GL+P 
Sbjct: 330 IERGRPQEAHSIFNTLIEEG-HKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPD 388

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             ++ A+++A  +SG LD+A      MK  S CKP   T++ LIK   K  + +   ++L
Sbjct: 389 TILFNAIINASSESGNLDQAMKIFEKMKE-SGCKPTASTFNTLIKGYGKIGKLEESSRLL 447

Query: 209 AEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             M     ++ +  T N ++  +   +K EE  +    M +S G  PD  T N++  AY 
Sbjct: 448 EMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKM-QSFGVKPDAVTFNTLARAYS 506

Query: 268 NSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFF 323
             G+    E       L   VK +++T   +   Y   G   KM   + F   M++    
Sbjct: 507 RIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEG---KMEEALRFFYRMKELGVH 563

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P +  +N +I+ F     ++ + E    M+  G+KP+ +T+ +L++A+S  G + + + I
Sbjct: 564 PNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            R +    +  D   F+ +   Y +AG+ EK  ++   M++    P+ + +  +I  + +
Sbjct: 624 YRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCS 683

Query: 444 LGMTEAAQNLENKM 457
            G  + A  + NKM
Sbjct: 684 AGEMKKAMQVYNKM 697



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 148/309 (47%), Gaps = 6/309 (1%)

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           T L++   + G   EA S  N +      KP + TY+ L+ + T+   F  +  +++++ 
Sbjct: 323 TKLMNGLIERGRPQEAHSIFNTLIEEGH-KPSIITYTTLVTALTRQKHFHSLLSLISKVQ 381

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+    + +N II+   ++   ++    F  M ESG C P   T N++I  YG  G +
Sbjct: 382 KNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESG-CKPTASTFNTLIKGYGKIGKL 440

Query: 273 EKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           E+  +   E  L    ++ + +T NIL +++      ++  +++  MQ     P  VT+N
Sbjct: 441 EESSRLL-EMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFN 499

Query: 331 IVIETFGKAGHIEKMEEYF-KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            +   + + G     E+    +M H  +KPN  T  ++V+ Y + G + +      +++ 
Sbjct: 500 TLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKE 559

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  +   FN +I  +    D++ +GE+   M+E    PD +TF+T++ A++++G  + 
Sbjct: 560 LGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKR 619

Query: 450 AQNLENKMI 458
            + +   M+
Sbjct: 620 CEEIYRDML 628



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 102/214 (47%), Gaps = 2/214 (0%)

Query: 242 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  I T   L  +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTA 363

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R   +  + S++  +QK    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 364 LTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 419
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             M+     PD +TF T+ +AY+ +G T  A+++
Sbjct: 484 YKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDM 517


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 2/344 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  LM  L K  + + A  +FE   +    P V  Y+ L++   ++G LDEA      M
Sbjct: 149 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKM 208

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S C+PDV T++ L+    K  R    +++L  M       + +TY+++IDG  K  +
Sbjct: 209 RENS-CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 267

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M+  G   P++ T NS+I  +  +  ++       E    G   DI T N
Sbjct: 268 VRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 326

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     + G   +   +   M+ +F  P V+TY+ +I  F K   I+     F  M  +
Sbjct: 327 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 386

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+ +T+ +LV  Y  AGL+   + +L ++  SD   D   +  ++  + + G + + 
Sbjct: 387 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 446

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             +   M +R C P+ +T+  +I A+   G    A  L  +M+ 
Sbjct: 447 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 490



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 161/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  +  +A LL + M   GL P+V  Y+ ++  + +   +D A+     M
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 103

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C P++ TY+ L+    +    D   ++L EM   G++    +Y+T++ G  K  K
Sbjct: 104 VE-NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     F     +G C PD+   +++I+    +G +++  K + +      + D+ T  
Sbjct: 163 IDMALKVFEDN-SNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFT 221

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +     + + V++ M+ R   P V+TY+ +I+   K G +   +E FK+M  R
Sbjct: 222 ALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 281

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN +TY SL+  +     +     ++ ++  +  + D   +N +I    + G   + 
Sbjct: 282 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             LF  MK + C PD IT++ +I  +  L   + A+ L + M+
Sbjct: 342 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 384



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 171/374 (45%), Gaps = 15/374 (4%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  K  +ALK+F     +      C      ++ L+  L K  + ++A  LFE M  +  
Sbjct: 159 KTGKIDMALKVF-----EDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSC 213

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V  +TAL+    +   L EA   +  M+   +C P+V TYS LI    K  +    +
Sbjct: 214 EPDVVTFTALMDGLCKGDRLQEAQQVLETMED-RNCTPNVITYSSLIDGLCKTGQVRDAQ 272

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMI 263
           ++   M   GIE + VTYN++I G+        ++S+   M E  + GC PDI T N++I
Sbjct: 273 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNG---VDSALLLMEEMTATGCLPDIITYNTLI 329

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                +G   +  + + +        D+ T + L   + +    D  R++ D M K+   
Sbjct: 330 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 389

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT++ ++E +  AG ++  E   ++M      P+  TY SLV  + K G +++   +
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L+++       +   +  +I A+ +AG      +L   M      P+ IT+ ++I  +  
Sbjct: 450 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCG 509

Query: 444 LGMTEAAQNLENKM 457
            G  E A+ +  ++
Sbjct: 510 TGDLEEARKMLERL 523



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 153/326 (46%), Gaps = 3/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K  Q   A  +F+ M+  G++P+V  Y +L+  +  +  +D A   + +M
Sbjct: 254 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            + + C PD+ TY+ LI    K  R     ++  +M         +TY+ +I G+ K ++
Sbjct: 314 -TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 372

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +   + F  M++     PD+ T ++++  Y N+G ++  E+   E        D+ T  
Sbjct: 373 IDMARTLFDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 431

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + + G   + R V+  M KR   P VVTY  +I+ F +AG      +  ++M   
Sbjct: 432 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN 491

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEK 414
           G++PN ITY SL+  +   G + +   +L ++E + +   D   +  ++    + G +  
Sbjct: 492 GVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSA 551

Query: 415 MGELFLTMKERHCVPDNITFATMIQA 440
             EL   +K+    P +  +  +I+ 
Sbjct: 552 ALELLEAIKQSGTPPRHDIYVALIRG 577



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 2/312 (0%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           +V  +T ++    ++  L EA +    MK      P+ +TY++LI    K H+      +
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTV-PNEWTYNVLINGFCKVHKVHRAYLL 64

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EM   G+  + VTY+T+I G+ +  K +     F  MVE+ GC P++ T N+++S   
Sbjct: 65  LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLC 123

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            +G +++  +  +E    G++ D  + + L     + G  D    V +        P VV
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y+ +I    K G +++  + F+KM+    +P+ +T+ +L+    K   + +   +L  +
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           E+ +   +   ++ +I    + G V    E+F  M  R   P+ +T+ ++I  +      
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 448 EAAQNLENKMIA 459
           ++A  L  +M A
Sbjct: 304 DSALLLMEEMTA 315



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 128/279 (45%), Gaps = 1/279 (0%)

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +C+ +V T++I+I    K +R        A+M   G   +  TYN +I+G+ K  K    
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                 M ES G  P++ T +++I  +     ++   K + +    G   ++ T N L  
Sbjct: 62  YLLLKEMKES-GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              R G+ D+   ++D M++R   P   +Y+ ++    K G I+   + F+   +    P
Sbjct: 121 GLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPP 180

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + + Y +L++   K G + +   +  ++  +    D   F  ++    +   +++  ++ 
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            TM++R+C P+ IT++++I      G    AQ +  +MI
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 279



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 3/213 (1%)

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C  ++ T   MI     +  + +   ++ +    G   +  T N+L   + +     +  
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M++    P VVTY+ VI  F +   ++   + F++M   G  PN +TY +L+S  
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + GL+ +   +L ++    +  D   ++ +++   + G ++   ++F       C PD 
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           + ++T+I      G  + A  L  K   M+ENS
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEK---MRENS 212



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 76/166 (45%)

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           M  + ++ T  I+     +A    +  +    M+K+   P   TYN++I  F K   + +
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                K+MK  G+ PN +TY +++  + +   +     + RQ+  +  + +   +N ++S
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              + G +++  EL   M+ER   PD  ++ T++      G  + A
Sbjct: 121 GLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 166



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 2/174 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  +P  A  L E M+ +G++P+V  Y +L+  +  +G L+EA   +  +
Sbjct: 464 TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   +CK D++ Y +++    +  R     ++L  +   G       Y  +I G  + K+
Sbjct: 524 ERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKE 583

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             +       M  S    P+     ++I      G  E+     +E  L+G K 
Sbjct: 584 LGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADE--LLGNKG 635


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 179/377 (47%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T +   L + K+  +A L FE M   GLKP  +  +AL+  + + G +DE    I D+
Sbjct: 300 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDV 358

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY----- 230
                   ++ TY++LI    KF + +   +IL  M  LG + ++ T+  +I+GY     
Sbjct: 359 MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHN 418

Query: 231 -GKAKKF-EEMES--------SFSAMVESGGCH--------------------PDIFTLN 260
            G+A +  +EME         S+ AM+ +G CH                    P++   +
Sbjct: 419 MGRALELLDEMEKRNLVPSAVSYGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYS 477

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I AY + G IE+  +  +  +  GV  DI   N +     +AG  ++  + +  +Q R
Sbjct: 478 ILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 537

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P  VT+   I  + K G + +  +YF +M   G+ PN+  Y  L++ + KAG +M+ 
Sbjct: 538 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 597

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            SI R++    V+ D    +  I    + G V++  ++F  +KE+  VPD  T++++I  
Sbjct: 598 LSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 657

Query: 441 YNALGMTEAAQNLENKM 457
           +   G  E A  L ++M
Sbjct: 658 FCKQGEVEKAFELHDEM 674



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 167/370 (45%), Gaps = 36/370 (9%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L  CK    A+ L E M   GLKP+V VY+ L+ AY   G ++EA   ++ M S S   P
Sbjct: 448 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM-SCSGVAP 506

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D++ Y+ +I   +K  + +     L E+   G++  AVT+   I GY K  K  E    F
Sbjct: 507 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 566

Query: 244 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 269
             M++ G                                  G  PD+ T ++ I     +
Sbjct: 567 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKN 626

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++  K ++E    G+  D+ T + L   + + G  +K   + D M  +   P +  Y
Sbjct: 627 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 686

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++   K+G I++  + F  M  +G++P+S+TY +++  Y K+  + +  S+  ++ +
Sbjct: 687 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 746

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V   +  +N ++    + GD+EK   LF  M ++      ++F T+I  Y      + 
Sbjct: 747 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 805

Query: 450 AQNLENKMIA 459
           A  L  +MIA
Sbjct: 806 ASQLFQEMIA 815



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 167/346 (48%), Gaps = 7/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF   ++   K  +  +A+  F+ ML  GL P+  +YT L++ + ++G L EA S    +
Sbjct: 545 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRL 604

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            ++    PDV T S  I    K  R     K+ +E+   G+     TY+++I G+ K   
Sbjct: 605 HALG-VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG- 662

Query: 236 FEEMESSFSAMVES--GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             E+E +F    E    G  P+IF  N+++     SG+I++  K ++     G++ D  T
Sbjct: 663 --EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 720

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + +   Y ++    +  S+   M  +   P    YN ++    K G +EK    F++M 
Sbjct: 721 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G    ++++ +L+  Y K+  I +   + +++    ++ D   +  +I  + +AG +E
Sbjct: 781 QKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 839

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +   LF  M+ER+ + D +T+ +++  YN LG +     L  KM+A
Sbjct: 840 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVA 885



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 164/369 (44%), Gaps = 6/369 (1%)

Query: 85  LDEAIKQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           L + +K    +L  K++ G+L  +  +     T+T L+  L K      A  +   M   
Sbjct: 200 LKDLLKCGMMELFWKVYNGMLDAKMGFDV--YTYTYLVGALCKTGDLRGAKRVLIEMDEK 257

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P+  +Y+ ++    Q G +DEA      M       P+ YTY+I+     +  R + 
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGE-KGLVPNTYTYTIITAGLCRAKRMNE 316

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            +    EM   G++      + +IDG+ +    +E+      MV S G   ++ T N +I
Sbjct: 317 AKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV-SCGIPINLITYNVLI 375

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 G +EK  +       +G K + +T  +L + Y R     +   ++D M+KR   
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P+ V+Y  +I        +    +  +KM   G+KPN + Y  L+ AY+  G I +   +
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L  +  S V  D   +N IIS   +AG +E+     L ++ R   PD +TF   I  Y+ 
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 555

Query: 444 LG-MTEAAQ 451
            G MTEAA+
Sbjct: 556 TGKMTEAAK 564



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 155/327 (47%), Gaps = 38/327 (11%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT +  +  L K  + ++A  +F  +   GL P V  Y++L+S + + G +++AF  ++D
Sbjct: 614 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-LHD 672

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
              +    P+++ Y+ L+    K        K+   M   G+E  +VTY+T+IDGY K++
Sbjct: 673 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E  S F  M  S G  P  F  N+++      G++EK    + E             
Sbjct: 733 NVAEAFSLFHEM-PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE------------- 778

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
                                 +QK   F T +++N +I+ + K+  I++  + F++M  
Sbjct: 779 ---------------------MLQKG--FATTLSFNTLIDGYCKSCKIQEASQLFQEMIA 815

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           + + P+ +TY +++  + KAG + + + + ++++  ++I+DT  +  ++  Y + G   +
Sbjct: 816 KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSE 875

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
           +  LF  M  +   PD +T+  +I A+
Sbjct: 876 VFALFEKMVAKGVKPDEVTYGLVIYAH 902



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 9/369 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLK 146
           +K  + Q ALK+F  L+++         FT   ++ G CKQ E  +A  L + M   G+ 
Sbjct: 624 LKNGRVQEALKVFSELKEKGLVP---DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 680

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P++ +Y ALV    +SG +  A    + M      +PD  TYS +I    K         
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPE-KGLEPDSVTYSTMIDGYCKSENVAEAFS 739

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G++  +  YN ++ G  K    E+  + F  M++ G       + N++I  Y
Sbjct: 740 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG--FATTLSFNTLIDGY 797

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             S  I++  + + E     +  D  T   +   + +AG  ++   +   MQ+R      
Sbjct: 798 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 857

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTY  ++  + K G   ++   F+KM  +G+KP+ +TY  ++ A+ K   +++   +  +
Sbjct: 858 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 917

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 445
           V    ++      + +I+A  +  D+ +  +L   M E    P      T++++++  G 
Sbjct: 918 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGK 977

Query: 446 MTEAAQNLE 454
           M EA +  E
Sbjct: 978 MDEATRVFE 986



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 143/341 (41%), Gaps = 35/341 (10%)

Query: 151 VYTALVSAYGQSGLLDEA----FSTIND------------MKSVSDCKP----------- 183
           V+  L+ +Y + G+LDEA    F   ND            +K +  C             
Sbjct: 160 VFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGM 219

Query: 184 -------DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                  DVYTY+ L+ +  K       +++L EM   G+  +   Y+ +I+G  +    
Sbjct: 220 LDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDI 279

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +E      +M E  G  P+ +T   + +    +  + + +  + E    G+K D    + 
Sbjct: 280 DEAVELKRSMGEK-GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSA 338

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + R G  D++  + D M        ++TYN++I    K G +EK  E  K M   G
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLG 398

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            KPNS T+C L+  Y +   + +   +L ++E  +++     +  +I+      D+    
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 458

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +L   M      P+ + ++ +I AY + G  E A+ L + M
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM 499



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 131/309 (42%), Gaps = 40/309 (12%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A  LF+ M   GL+P    Y+ ++  Y +S  + EAFS  ++M S    +
Sbjct: 692 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS-KGVQ 750

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  + Y+ L+  C K    +    +  EM   G   + +++NT+IDGY K+ K +E    
Sbjct: 751 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQL 809

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M+ +    PD  T  ++I  +  +G +E+    + E     +  D  T   L   Y 
Sbjct: 810 FQEMI-AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 868

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-----------------ETFGKA----GH 341
           + G   ++ ++ + M  +   P  VTY +VI                 E  GK     G 
Sbjct: 869 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 928

Query: 342 IEKM--------------EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           I  +               +   +M   G+KP+     +LV ++ +AG + +   +   V
Sbjct: 929 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGV 988

Query: 388 ENSDVILDT 396
           ++  ++ DT
Sbjct: 989 KSLGLVPDT 997



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 3/248 (1%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V ++ +ID Y +    +E  + F  + ++      +   NS++      G +E   K 
Sbjct: 157 SPVVFDILIDSYKRMGMLDEAANVF-FVAKNDSILISLIRCNSLLKDLLKCGMMELFWKV 215

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           YN      +  D+ T   L  +  + G     + V+  M ++   P    Y++VIE   +
Sbjct: 216 YNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQ 275

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G I++  E  + M  +G+ PN+ TY  + +   +A  + +      +++ + +  D   
Sbjct: 276 VGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNA 335

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            + +I  + + GD++++  +   M       + IT+  +I      G  E A  +   M+
Sbjct: 336 CSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMV 395

Query: 459 AM--KENS 464
            +  K NS
Sbjct: 396 TLGCKPNS 403



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 252 CHPDIF-----TLNSMI-SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           C+ ++F      L  MI + Y +S  ++ +  W+  +      +     +IL  SY R G
Sbjct: 117 CNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYG----GSSPVVFDILIDSYKRMG 172

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           M D+  +V    +      +++  N +++   K G +E   + +  M    M  +  TY 
Sbjct: 173 MLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYT 232

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            LV A  K G +     +L +++   +  +   ++ +I    Q GD+++  EL  +M E+
Sbjct: 233 YLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK 292

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             VP+  T+ T+I A    G+  A +  E K+
Sbjct: 293 GLVPNTYTY-TIITA----GLCRAKRMNEAKL 319



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T+T LM    K  Q  +   LFE M++ G+KP    Y  ++ A+ +   L EAF   +++
Sbjct: 859  TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 918

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKA 233
                        + +LI +  K  R DL E  K+L EM  LG++ S    NT++  + +A
Sbjct: 919  VGKGMLTKGT-IHDLLITALCK--REDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEA 975

Query: 234  KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             K +E    F   V+S G  PD  TL  +++   N  + E
Sbjct: 976  GKMDEATRVFEG-VKSLGLVPDTTTLIDLVNGNLNDTDSE 1014


>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           origanoides]
          Length = 408

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLXMYVENKKFLEALSVFSEMREIK-CLLDLXTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 72

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYV 131

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 156/347 (44%), Gaps = 11/347 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 69  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 127

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 128 XMYVENKKFLEALSVFSEMREIK-CLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 186

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 187 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 245

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 246 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 303

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 304 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVK 359

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           D   F  +I    +      + E+F  M+     PD+   A ++ AY
Sbjct: 360 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAY 406


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 178/393 (45%), Gaps = 42/393 (10%)

Query: 107 QQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           ++  +A C+    T+   +  L K ++ + A  L + M      P+   YTALV    ++
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 124

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           G LDEA + +  M    +  P + TY+++I   +K  R +   +I  +M   G    A  
Sbjct: 125 GRLDEAMAILEQMVEKGN-SPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFV 183

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESG---GCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
           Y  +I G  K  K +E     + MVE+G   G  PD+   N +I     SGN+E    ++
Sbjct: 184 YTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYF 243

Query: 280 NE-----------FNLMGV---KAD--------------------IQTLNILTKSYGRAG 305
           +E           FN +     KA+                    + T   L   + + G
Sbjct: 244 DELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLG 303

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D+    +    +R F P  VTY  +I+   K G +E+  E F +M++RG +P+++TY 
Sbjct: 304 RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYA 363

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +L+  + KA +I K   + RQ+  S  ++ T  +N I+    +AG V +    FL M+ER
Sbjct: 364 ALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 423

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            CV   +T++ ++  + + G   AA  L  +M+
Sbjct: 424 GCVATVVTYSALMDGFCSEGNVSAAVELFRRML 456



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 150/363 (41%), Gaps = 38/363 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+T ++  L K  + E+A  +F  ML +G +P   VYTAL+S   + G LDEA   +N 
Sbjct: 147 KTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQ 206

Query: 175 M---KSVSDCKPDV----------------------------------YTYSILIKSCTK 197
           M         +PDV                                  +T++ L+ +  K
Sbjct: 207 MVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCK 266

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             R +     + +MS      +  TY +++DG+ K  + +E        VE G   PD  
Sbjct: 267 AERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFI-PDAV 325

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I      G +E+  + ++E    G + D  T   L   + +A M  K   V   M
Sbjct: 326 TYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 385

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +     + VTYNI+++   KAG + +    F  M+ RG     +TY +L+  +   G +
Sbjct: 386 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 445

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                + R++ +     +   +N II    +AG + K    F  + +R   PD  TF + 
Sbjct: 446 SAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSF 505

Query: 438 IQA 440
           +  
Sbjct: 506 LHG 508



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 150/341 (43%), Gaps = 13/341 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L K ++ E+A    + M      P++  YT+LV  + + G LDEA   + + 
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD  TY+ +I    K  R +   +   EM   G E  AVTY  +IDG+ KAK 
Sbjct: 316 VE-RGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKM 374

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    +  M++SG     + T N ++     +G + +    +      G  A + T +
Sbjct: 375 IPKAHRVYRQMLQSGTVVSTV-TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYS 433

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +   G       +   M  R   P +V+YNI+I    +AG + K   YF+K+  R
Sbjct: 434 ALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR 493

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL------DTPFFNCIISAYGQA 409
            + P+  T+ S +      GL  ++D++   VE  + ++      +   ++ ++    +A
Sbjct: 494 RLCPDVYTFNSFLH-----GLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRA 548

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G +E   E+F  M  R   PD + F T+I+     G  + A
Sbjct: 549 GGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEA 589



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 141/320 (44%), Gaps = 3/320 (0%)

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           L D L  +   +  LV+A  ++   +EA + +  M S   C P ++TY+ L+    K  R
Sbjct: 246 LDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKM-SERRCFPTLFTYTSLVDGFLKLGR 304

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D     L E    G    AVTY +IIDG  K  + EE    F  M  + G  PD  T  
Sbjct: 305 LDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM-RNRGYEPDAVTYA 363

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  +  +  I K  + Y +    G      T NI+     +AG   +  +    M++R
Sbjct: 364 ALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 423

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
               TVVTY+ +++ F   G++    E F++M  RG +PN ++Y  ++    +AG + K 
Sbjct: 424 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 483

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG-ELFLTMKERHCVPDNITFATMIQ 439
                ++    +  D   FN  +    Q  D    G ELF +M  +   P+  +++ ++ 
Sbjct: 484 YFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMD 543

Query: 440 AYNALGMTEAAQNLENKMIA 459
                G  E    + ++M++
Sbjct: 544 GICRAGGLEVTLEIFHEMVS 563



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 147/350 (42%), Gaps = 39/350 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K  + ++A L  +  +  G  P    YT+++    + G ++E     ++M
Sbjct: 291 TYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 350

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    +PD  TY+ LI    K        ++  +M   G   S VTYN I+DG  KA +
Sbjct: 351 RN-RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGR 409

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  ++F AM E  GC   + T ++++  + + GN+    + +      G + ++ + N
Sbjct: 410 VAEAYATFLAM-EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYN 468

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN------------------------- 330
           I+ +   RAG   K     + + +R   P V T+N                         
Sbjct: 469 IIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVS 528

Query: 331 -----------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                      I+++   +AG +E   E F +M  RG+ P+ + + +L+     AG + +
Sbjct: 529 QGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDE 588

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              + R++E      D   +  ++ A  +   +E+   L   MK + C P
Sbjct: 589 ALEVFRELERRSAP-DAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAP 637



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 3/204 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D     ++++    +G +++     +E   M    D+    ++     R    D+  SV+
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDE---MPCSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           +   +    P  VTYN+ I+   KA  ++   +  KKM  +   P ++TY +LV    KA
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 124

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +  +IL Q+           +  +I    +AG VE+   +F+ M    C PD   +
Sbjct: 125 GRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 184

Query: 435 ATMIQAYNALGMTEAAQNLENKMI 458
             +I     +G  + A    N+M+
Sbjct: 185 TALISGLAKIGKLDEALVYLNQMV 208



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 4/203 (1%)

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C PD+     +I+       +++           G + D  T N+      +A   D   
Sbjct: 37  CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 96

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M ++   PT VTY  +++   KAG +++     ++M  +G  P   TY  ++   
Sbjct: 97  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGL 156

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV--- 428
           SKAG + +   I   +  +    D   +  +IS   + G +++       M E  C    
Sbjct: 157 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGV 216

Query: 429 -PDNITFATMIQAYNALGMTEAA 450
            PD +    +I+   A G  E A
Sbjct: 217 EPDVVIHNLVIRQLCASGNLEDA 239


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 241

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 242 HEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 301

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKXSG-FXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYV 132

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L+    +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 70  AISIFSRLKXSG-FXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 128

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 129 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 187

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 188 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 246

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    GV+ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 247 NLIQEMQSRGVEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 304

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 305 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 361 DITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 420

Query: 455 NKM 457
            +M
Sbjct: 421 MEM 423


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 203/488 (41%), Gaps = 79/488 (16%)

Query: 37  PIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQL 96
           P  +  I + +E  L K++ T F   +          +NL P    E +    +     L
Sbjct: 35  PFCDREIIRHSEAWLVKVVCTLFFRSHSLNACFGYLSRNLNPSIAFEVIK---RFSDPLL 91

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            LK F   R          T+  LM  L K    + A ++F+ M SDG+ P   +   LV
Sbjct: 92  GLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLV 151

Query: 157 SAYGQSGLLDEAFSTINDM---------------------KSVSD-------------CK 182
           S+Y + G LD A + +N++                     +++ D               
Sbjct: 152 SSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFV 211

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDVY+++ILI+   +    D   +    M   G     V+YNT+I+G+ +  +  +    
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +   G  PD+ T  S+IS Y   G+++   + ++E    G+K +  T N+L   +G
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331

Query: 303 RAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           + G    MRS M   +K       P VVT+  +I+ + + G + +  + +++MK R + P
Sbjct: 332 KVG---NMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSP 388

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N  TY  L++A  K   I +  + LR +++S+V+     +N +I  + +AG V++   + 
Sbjct: 389 NVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIV 448

Query: 420 LTMKER-----------------------------------HCVPDNITFATMIQAYNAL 444
             M+E+                                   +CVPD IT  ++I      
Sbjct: 449 AEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKA 508

Query: 445 GM-TEAAQ 451
           GM  EA+Q
Sbjct: 509 GMPNEASQ 516



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
           ++L I  +  TY+ ++    K    +  +  F  M  S G  PD   L  ++S+Y   G 
Sbjct: 101 THLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCM-RSDGILPDSSILELLVSSYARMGK 159

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++  + + NE +  G+K      N L     +  + D+   +     + +F P V ++NI
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I    + G I+K  E+F+ M + G  P+ ++Y +L++ + +   I K   +L++    D
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE----D 275

Query: 392 VIL-----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++     D   +  IIS Y + GD++   ELF  M      P++ TF  +I  +  +G 
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335

Query: 447 TEAAQNLENKMIAM 460
             +A  +  KM+ +
Sbjct: 336 MRSAMVMYEKMLLL 349


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 178/377 (47%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T +   L + K+  +A L FE M   GLKP  +  +AL+  + + G +DE    I D+
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDV 70

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY----- 230
                   ++ TY++LI    KF + +   +IL  M  LG + ++ T+  +I+GY     
Sbjct: 71  MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHN 130

Query: 231 -GKAKKF-EEMES--------SFSAMVESGGCH--------------------PDIFTLN 260
            G+A +  +EME         S+ AM+ +G CH                    P++   +
Sbjct: 131 MGRALELLDEMEKRNLVPSAVSYGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYS 189

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  Y + G IE+  +  +  +  GV  DI   N +     +AG  ++  + +  +Q R
Sbjct: 190 TLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 249

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P  VT+   I  + K G + +  +YF +M   G+ PN+  Y  L++ + KAG +M+ 
Sbjct: 250 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 309

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            SI R +    V+ D    +  I    + G V++  ++F  +KE+  VPD  T++++I  
Sbjct: 310 LSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 369

Query: 441 YNALGMTEAAQNLENKM 457
           +   G  E A  L ++M
Sbjct: 370 FCKQGEVEKAFELHDEM 386



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 36/370 (9%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L  CK    A+ L E M   GLKP+V VY+ L+  Y   G ++EA   ++ M S S   P
Sbjct: 160 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGVAP 218

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D++ Y+ +I   +K  + +     L E+   G++  AVT+   I GY K  K  E    F
Sbjct: 219 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 278

Query: 244 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 269
             M++ G                                  G  PD+ T ++ I     +
Sbjct: 279 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKN 338

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++  K ++E    G+  D+ T + L   + + G  +K   + D M  +   P +  Y
Sbjct: 339 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++   K+G I++  + F  M  +G++P+S+TY +++  Y K+  + +  S+  ++ +
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 458

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V   +  +N ++    + GD+EK   LF  M ++      ++F T+I  Y      + 
Sbjct: 459 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 517

Query: 450 AQNLENKMIA 459
           A  L  +MIA
Sbjct: 518 ASQLFQEMIA 527



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 7/343 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  ++  L K  + E+AS     +   GLKP    + A +  Y ++G + EA    ++M 
Sbjct: 223 YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 282

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                 P+   Y++LI     F   +L+E   I   +  LG+     T +  I G  K  
Sbjct: 283 D-HGLMPNNPLYTVLING--HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 339

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E    FS + E G   PD+FT +S+IS +   G +EK  + ++E  L G+  +I   
Sbjct: 340 RVQEALKVFSELKEKG-LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     ++G   + R + D M ++   P  VTY+ +I+ + K+ ++ +    F +M  
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 458

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G++P+S  Y +LV    K G + K  ++ R++        T  FN +I  Y ++  +++
Sbjct: 459 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 517

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +LF  M  +  +PD++T+ T+I  +   G  E A  L  +M
Sbjct: 518 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 560



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+ YTY+I+     +  R +  +    EM   G++      + +IDG+ +    +E+   
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV S G   ++ T N +I      G +EK  +       +G K + +T  +L + Y 
Sbjct: 68  KDVMV-SCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 126

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R     +   ++D M+KR   P+ V+Y  +I        +    +  +KM   G+KPN +
Sbjct: 127 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 186

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y +L+  Y+  G I +   +L  +  S V  D   +N IIS   +AG +E+     L +
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246

Query: 423 KERHCVPDNITFATMIQAYNALG-MTEAAQ 451
           + R   PD +TF   I  Y+  G MTEAA+
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAK 276



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 21/359 (5%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT +  +  L K  + ++A  +F  +   GL P V  Y++L+S + + G +++AF  ++D
Sbjct: 326 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-LHD 384

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
              +    P+++ Y+ L+    K        K+   M   G+E  +VTY+T+IDGY K++
Sbjct: 385 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 444

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E  S F  M  S G  P  F  N+++      G++EK    + E    G  A   + 
Sbjct: 445 NVAEAFSLFHEM-PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSF 502

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y ++    +   +   M  +   P  VTY  VI+   KAG +E+    FK+M+ 
Sbjct: 503 NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 562

Query: 355 R-----------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           R                 G+KP+ +TY  ++ A+ K   +++   +  +V    ++    
Sbjct: 563 RNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 622

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 455
             + +I+A  +  D+ +  +L   M E    P     +T++++++  G M EA +  E 
Sbjct: 623 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEG 681



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 160/371 (43%), Gaps = 56/371 (15%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  +    TF   ++   K  +  +A+  F+ ML  GL P+  +YT L++ + ++G L
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 306

Query: 166 DEAFSTINDMKS------VSDCK----------------------------PDVYTYSIL 191
            EA S    + +      V  C                             PDV+TYS L
Sbjct: 307 MEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 366

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I    K    +   ++  EM   GI  +   YN ++DG  K+   +     F  M E G 
Sbjct: 367 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG- 425

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-M 310
             PD  T ++MI  Y  S N+ +    ++E    GV+      N L     + G  +K M
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
               + +QK F   T +++N +I+ + K+  I++  + F++M  + + P+ +TY +++  
Sbjct: 486 NLFREMLQKGF--ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 543

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + KAG + + + + ++++  ++I+DT F                   LF  M  +   PD
Sbjct: 544 HCKAGKMEEANLLFKEMQERNLIVDTVF------------------ALFEKMVAKGVKPD 585

Query: 431 NITFATMIQAY 441
            +T+  +I A+
Sbjct: 586 EVTYGLVIYAH 596



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 92/207 (44%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+ +T   + +    +  + + +  + E    G+K D    + L   + R G  D++
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             + D M        ++TYN++I    K G +EK  E  K M   G KPNS T+C L+  
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y +   + +   +L ++E  +++     +  +I+      D+    +L   M      P+
Sbjct: 125 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            + ++T+I  Y + G  E A+ L + M
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGM 211



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 130/291 (44%), Gaps = 22/291 (7%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A  LF+ M   GL+P    Y+ ++  Y +S  + EAFS  ++M S    +
Sbjct: 404 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS-KGVQ 462

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  + Y+ L+  C K    +    +  EM   G   + +++NT+IDGY K+ K +E    
Sbjct: 463 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQL 521

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF---NLM-------------- 285
           F  M+ +    PD  T  ++I  +  +G +E+    + E    NL+              
Sbjct: 522 FQEMI-AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAK 580

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GVK D  T  ++  ++ +     +   + D +  +        ++++I    K   + + 
Sbjct: 581 GVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEA 640

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +   +M   G+KP+     +LV ++ +AG + +   +   V++  ++ DT
Sbjct: 641 SKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDT 691



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M ++   P   TY I+     +A  + + +  F++M+  G+KP+     +L+  + + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           I +V  I   + +  + ++   +N +I    + G +EK  E+   M    C P++ TF  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 437 MIQAY 441
           +I+ Y
Sbjct: 121 LIEGY 125



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LFE M++ G+KP    Y  ++ A+ +   L EAF   +++            + +LI + 
Sbjct: 573 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT-IHDLLITAL 631

Query: 196 TKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
            K  R DL E  K+L EM  LG++ S    +T++  + +A K +E    F   V+S G  
Sbjct: 632 CK--REDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEG-VKSLGLV 688

Query: 254 PDIFTLNSMISAYGNSGNIE 273
           PD  TL  +++   N  + E
Sbjct: 689 PDTTTLIDLVNGNLNDTDSE 708


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 203/488 (41%), Gaps = 79/488 (16%)

Query: 37  PIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQL 96
           P  +  I + +E  L K++ T F   +          +NL P    E +    +     L
Sbjct: 35  PFCDREIIRHSEAWLVKVVCTLFFRSHSLNACFGYLSRNLNPSIAFEVIK---RFSDPLL 91

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            LK F   R          T+  LM  L K    + A ++F+ M SDG+ P   +   LV
Sbjct: 92  GLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLV 151

Query: 157 SAYGQSGLLDEAFSTINDM---------------------KSVSD-------------CK 182
           S+Y + G LD A + +N++                     +++ D               
Sbjct: 152 SSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFV 211

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDVY+++ILI+   +    D   +    M   G     V+YNT+I+G+ +  +  +    
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +   G  PD+ T  S+IS Y   G+++   + ++E    G+K +  T N+L   +G
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331

Query: 303 RAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           + G    MRS M   +K       P VVT+  +I+ + + G + +  + +++MK R + P
Sbjct: 332 KVG---NMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSP 388

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N  TY  L++A  K   I +  + LR +++S+V+     +N +I  + +AG V++   + 
Sbjct: 389 NVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIV 448

Query: 420 LTMKER-----------------------------------HCVPDNITFATMIQAYNAL 444
             M+E+                                   +CVPD IT  ++I      
Sbjct: 449 AEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKA 508

Query: 445 GM-TEAAQ 451
           GM  EA+Q
Sbjct: 509 GMPNEASQ 516



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
           ++L I  +  TY+ ++    K    +  +  F  M  S G  PD   L  ++S+Y   G 
Sbjct: 101 THLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCM-RSDGILPDSSILELLVSSYARMGK 159

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++  + + NE +  G+K      N L     +  + D+   +     + +F P V ++NI
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I    + G I+K  E+F+ M + G  P+ ++Y +L++ + +   I K   +L++    D
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE----D 275

Query: 392 VIL-----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++     D   +  IIS Y + GD++   ELF  M      P++ TF  +I  +  +G 
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335

Query: 447 TEAAQNLENKMIAM 460
             +A  +  KM+ +
Sbjct: 336 MRSAMVMYEKMLLL 349


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 177/366 (48%), Gaps = 22/366 (6%)

Query: 108 QW------YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           QW      +Q    T   L+    K K+ E+A  L +  L     P+  +YT +++ + +
Sbjct: 64  QWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCK 123

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-- 219
           +G +D+AF  +++MK     K DV  +S LI+   +  R D   + L +   +G ECS  
Sbjct: 124 AGQVDQAFELLDEMKE-RGVKMDVLLHSTLIQGLCRKGRID---EALEQFKSMGEECSPN 179

Query: 220 AVTYNTIIDGYGKAKK-------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
            +TYNT+++G  KA +       F++ME  + A   S GC PD+ + +++I A   +  +
Sbjct: 180 VITYNTVVNGLCKANRIDEALELFDDMEKRYEA---SHGCEPDVISYSTVIDALCKAQRV 236

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           +K  +++     +G   ++ T + L     +     +   ++  M+++ F   ++ +N +
Sbjct: 237 DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAM 296

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           +    K    EK  ++F+++   G KPN +TY   V    KAG + +   IL ++  S V
Sbjct: 297 LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV 356

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             D   ++ II  + +AG ++K  ++F  M    C+P  +TF T++  ++    +  A  
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 453 LENKMI 458
           +   M+
Sbjct: 417 VHEDMV 422



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 140/298 (46%), Gaps = 5/298 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMK----SVSDCKPDVYTYSILIKSCTKFHRFD 202
           P+V  Y  +V+   ++  +DEA    +DM+    +   C+PDV +YS +I +  K  R D
Sbjct: 178 PNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 237

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              +    M  +G   + VTY+++IDG  K  +  E       M E G    +I   N+M
Sbjct: 238 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGF-GINIIDFNAM 296

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + A   +   EK  +++      G K ++ T N+      +AG  D+   ++  M +   
Sbjct: 297 LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV 356

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P V+TY+ +I+ F KAG ++K ++ F +M      P+ +T+ +L+  +S+     +   
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +   + N+  I     +N ++     A  VE   E++  MK +   PD  T+A +IQ 
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQC 474



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 157/378 (41%), Gaps = 42/378 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-----LSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           T+  ++  L K  + ++A  LF+ M      S G +P V  Y+ ++ A  ++  +D+A+ 
Sbjct: 182 TYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE 241

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               M++V  C P+V TYS LI    K  R     ++L  M   G   + + +N ++   
Sbjct: 242 YFKRMRAVG-CAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHAL 300

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  + E+    F  +++SG   P++ T N  +     +G +++  +   E     V  D
Sbjct: 301 WKNDEQEKACQFFERLLKSGK-KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPD 359

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFM-------------------------QKRF---- 321
           + T + +   + +AG  DK   V   M                         ++ F    
Sbjct: 360 VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHE 419

Query: 322 ------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                 F P + TYN++++    A  +E   E + KMK +  +P+  TY  L+    +A 
Sbjct: 420 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRAR 479

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + +    L  +E  +V+ +    + ++    + G+V++   +   + E  C P   TF 
Sbjct: 480 RVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFK 539

Query: 436 TMIQAYNALGMTEAAQNL 453
            +++        EAA  L
Sbjct: 540 ILVEELYLRKKWEAASKL 557



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 147/375 (39%), Gaps = 34/375 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++  L K  + E+A   FE +L  G KP+V  Y   V    ++G +DEA+  + +M 
Sbjct: 293 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMV 352

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             S   PDV TYS +I    K  R D  + +   M         VT+ T++ G+ + KK 
Sbjct: 353 E-SKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKS 411

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E       MV +G   P + T N ++     + ++E   + Y++      + D  T   
Sbjct: 412 REAFRVHEDMVNAGFI-PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAP 470

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM----------- 345
           L +   RA   D+ +  +D M+     P     + ++E   K G +++            
Sbjct: 471 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVG 530

Query: 346 -------------EEYFKK--------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                        E Y +K        ++  G   ++ TY   V+   KAG   +   ++
Sbjct: 531 CQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVI 590

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            Q+    V  D   +  ++ +      VE     F  M  R C P  +T+  +I    + 
Sbjct: 591 EQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSA 650

Query: 445 GMTEAAQNLENKMIA 459
            M + A  +   M+A
Sbjct: 651 DMADEAFRIFEAMVA 665



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 11/264 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    + K+  +A  + E M++ G  P +  Y  L+     +  ++ A    + M
Sbjct: 397 TFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKM 456

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     +PD  TY+ LI+   +  R D  ++ L  M    +  +    + +++   K  +
Sbjct: 457 KRKKR-QPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGE 515

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQ 292
            +E  S    +VE G C P   T   ++        +   +KW     L+   G  AD  
Sbjct: 516 VDEACSVLDNVVEVG-CQPLGETFKILVE------ELYLRKKWEAASKLLRSPGFVADAA 568

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T ++      +AG  D+   V++ M  +   P   TY  V+ +      +E     F+KM
Sbjct: 569 TYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKM 628

Query: 353 KHRGMKPNSITYCSLVSAYSKAGL 376
             RG  P  +TY  L+     A +
Sbjct: 629 ASRGCAPGLVTYTLLIGEACSADM 652



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 11/159 (6%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+  L   K+ E AS L     S G       Y+  V+   ++G  DEA   I  
Sbjct: 536 ETFKILVEELYLRKKWEAASKLLR---SPGFVADAATYSLCVAEICKAGKPDEAVEVIEQ 592

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE---MSYLGIECSAVTYNTIIDGYG 231
           M  +   +PD  TY  +++S     R   +E  +AE   M+  G     VTY  +I    
Sbjct: 593 M-VLKGVRPDEGTYVAVLRSLCGLDR---VESAIAEFEKMASRGCAPGLVTYTLLIGEAC 648

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            A   +E    F AMV + G  P   T+ ++ S   ++G
Sbjct: 649 SADMADEAFRIFEAMV-AAGFTPQAQTMRTLSSCLRDAG 686


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 5/340 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K W+ AL +F  LR +        T+  ++ +L + +Q E +  + E M +  ++P    
Sbjct: 21  KSWRQALLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNIT 80

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ L+S   +    D A +  + M   + C PDV TYS +I    K  ++D    +   +
Sbjct: 81  YSTLISCANRCNYQDAAMAWFDRMHE-AGCVPDVVTYSTMIDVYGKMGKYDEAIALYERV 139

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G +   VTY T++  +G+A       S F  M +  G  PD    N MI+  G +G 
Sbjct: 140 KQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEM-KGSGVQPDAIVYNIMIACLGRAGR 198

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYN 330
           +    K + E    GVK +  TL+ + ++Y R G  + M  +  F + R      V+ YN
Sbjct: 199 MGHALKVFEEMEREGVKPNAVTLSTVMETYSRCG--NVMEGLEVFQRLRQGVACDVIVYN 256

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            V++   +AG   + E+Y ++M   G +PN  TY +++S Y+K G+ ++      Q+  +
Sbjct: 257 AVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEA 316

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
              +D   +  ++ AYG A +  K+ E+   M   +C PD
Sbjct: 317 GYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPD 356



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 135/275 (49%), Gaps = 2/275 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++YTY++++K   +  +++  ++I  +M+   +    +TY+T+I    +    +   + F
Sbjct: 42  NIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMAWF 101

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E+G C PD+ T ++MI  YG  G  ++    Y      G K D  T   + + +GR
Sbjct: 102 DRMHEAG-CVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGR 160

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG      S+ + M+     P  + YNI+I   G+AG +    + F++M+  G+KPN++T
Sbjct: 161 AGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVT 220

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
             +++  YS+ G +M+   + +++    V  D   +N ++    +AG   +  +    M 
Sbjct: 221 LSTVMETYSRCGNVMEGLEVFQRLRQG-VACDVIVYNAVLKMCREAGLASEAEQYLREMT 279

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           E    P++ T+  MI  Y   GM   A    ++M+
Sbjct: 280 ESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMV 314



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT-ALVSAYGQSGLLDEAFSTINDMKSV 178
           ++ +L   K   QA LLF  + ++    S+++YT  ++    + G   E    I +  + 
Sbjct: 13  VVAILNSLKSWRQALLLFRWLRAEH-SSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMAN 71

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +D +PD  TYS LI    + +  D        M   G     VTY+T+ID YGK  K++E
Sbjct: 72  ADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDE 131

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             + +   V+  G  PD  T  +M+  +G +G I      + E    GV+ D    NI+ 
Sbjct: 132 AIALYER-VKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMI 190

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              GRAG       V + M++    P  VT + V+ET+ + G++ +  E F++++ +G+ 
Sbjct: 191 ACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLR-QGVA 249

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            + I Y +++    +AGL  + +  LR++  S    +   +  +IS Y + G   +    
Sbjct: 250 CDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRT 309

Query: 419 FLTMKERHCVPDNITFATMIQAY 441
           F  M E     D + + +++QAY
Sbjct: 310 FSQMVEAGYQIDVMAYTSLLQAY 332


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 155/287 (54%), Gaps = 2/287 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +Q +  F+ M  +G++P    + +L++   + GL + A +  ++M +    + DV++Y+ 
Sbjct: 321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTN-RRIEQDVFSYNT 379

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+ +  K  + DL  +ILA+M    I  + V+Y+T+IDG+ KA +F+E  + F  M    
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM-RYL 438

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G   D  + N+++S Y   G  E+      E   +G+K D+ T N L   YG+ G YD++
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + V   M++    P ++TY+ +I+ + K G  ++  E F++ K  G++ + + Y +L+ A
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
             K GL+    S++ ++    +  +   +N II A+G++  +++  +
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 187/397 (47%), Gaps = 45/397 (11%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + ++  LG+  +   A  +FE   + G   +V  ++AL+SAYG+SGL +EA S  N MK 
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 178 VSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTII-----DGYG 231
               +P++ TY+ +I +C K    F  + K   EM   G++   +T+N+++      G  
Sbjct: 297 YG-LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLW 355

Query: 232 KAKK--FEEMES--------SFSAMVES---GG----------------CHPDIFTLNSM 262
           +A +  F+EM +        S++ ++++   GG                  P++ + +++
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTV 415

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  +  +G  ++    + E   +G+  D  + N L   Y + G  ++   ++  M     
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
              VVTYN ++  +GK G  +++++ F +MK   + PN +TY +L+  YSK GL  +   
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           I R+ +++ +  D   ++ +I A  + G V     L   M +    P+ +T+ ++I A+ 
Sbjct: 536 IFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFG 595

Query: 443 ALGMTEAAQNLEN---------KMIAMKENSGKKLIQ 470
                + + +  N          + A+ E  G ++IQ
Sbjct: 596 RSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQ 632



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 147/339 (43%), Gaps = 65/339 (19%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK---PSVD 150
           W+ A  +F  +  ++  Q     F+   ++   CK   Q  L FE++    +K   P+V 
Sbjct: 355 WEAARNLFDEMTNRRIEQ---DVFSYNTLLDAICKGG-QMDLAFEILAQMPVKRIMPNVV 410

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y+ ++  + ++G  DEA +   +M+ +     D  +Y+ L+   TK  R +    IL E
Sbjct: 411 SYSTVIDGFAKAGRFDEALNLFGEMRYLG-IALDRVSYNTLLSIYTKVGRSEEALDILRE 469

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M+ +GI+   VTYN ++ GYGK  K++E++  F+ M       P++ T +++I  Y   G
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREH-VLPNLLTYSTLIDGYSKGG 528

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY- 329
             ++  + + EF   G++AD+   + L  +  + G+     S++D M K    P VVTY 
Sbjct: 529 LYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYN 588

Query: 330 ---------------------------------------NIVIETFGKAG---------- 340
                                                  N VI+ FG+            
Sbjct: 589 SIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKD 648

Query: 341 ------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
                  +  + E F+KM    +KPN +T+ ++++A S+
Sbjct: 649 CEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSR 687


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 178/377 (47%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T +   L + K+  +A L FE M   GLKP  +  +AL+  + + G +DE    I D+
Sbjct: 211 TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDV 269

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY----- 230
                   ++ TY++LI    KF + +   +IL  M  LG + ++ T+  +I+GY     
Sbjct: 270 MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHN 329

Query: 231 -GKAKKF-EEMES--------SFSAMVESGGCH--------------------PDIFTLN 260
            G+A +  +EME         S+ AM+ +G CH                    P++   +
Sbjct: 330 MGRALELLDEMEKRNLVPSAVSYGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYS 388

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  Y + G IE+  +  +  +  GV  DI   N +     +AG  ++  + +  +Q R
Sbjct: 389 TLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 448

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P  VT+   I  + K G + +  +YF +M   G+ PN+  Y  L++ + KAG +M+ 
Sbjct: 449 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 508

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            SI R +    V+ D    +  I    + G V++  ++F  +KE+  VPD  T++++I  
Sbjct: 509 LSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 568

Query: 441 YNALGMTEAAQNLENKM 457
           +   G  E A  L ++M
Sbjct: 569 FCKQGEVEKAFELHDEM 585



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 36/370 (9%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L  CK    A+ L E M   GLKP+V VY+ L+  Y   G ++EA   ++ M S S   P
Sbjct: 359 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGVAP 417

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D++ Y+ +I   +K  + +     L E+   G++  AVT+   I GY K  K  E    F
Sbjct: 418 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 477

Query: 244 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 269
             M++ G                                  G  PD+ T ++ I     +
Sbjct: 478 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKN 537

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++  K ++E    G+  D+ T + L   + + G  +K   + D M  +   P +  Y
Sbjct: 538 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++   K+G I++  + F  M  +G++P+S+TY +++  Y K+  + +  S+  ++ +
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V   +  +N ++    + GD+EK   LF  M ++      ++F T+I  Y      + 
Sbjct: 658 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 716

Query: 450 AQNLENKMIA 459
           A  L  +MIA
Sbjct: 717 ASQLFQEMIA 726



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 167/346 (48%), Gaps = 7/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF   ++   K  +  +A+  F+ ML  GL P+  +YT L++ + ++G L EA S    +
Sbjct: 456 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            ++    PDV T S  I    K  R     K+ +E+   G+     TY+++I G+ K   
Sbjct: 516 HALG-VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG- 573

Query: 236 FEEMESSFSAMVES--GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             E+E +F    E    G  P+IF  N+++     SG+I++  K ++     G++ D  T
Sbjct: 574 --EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 631

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            + +   Y ++    +  S+   M  +   P    YN ++    K G +EK    F++M 
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G    ++++ +L+  Y K+  I +   + +++    ++ D   +  +I  + +AG +E
Sbjct: 692 QKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 750

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +   LF  M+ER+ + D +T+ +++  YN LG +     L  KM+A
Sbjct: 751 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVA 796



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 144/319 (45%), Gaps = 19/319 (5%)

Query: 151 VYTALVSAYGQSGLLDEA----FSTIND--MKSVSDCK-----------PDVYTYSILIK 193
           V+  L+ +Y + G+LDEA    F   ND  + S+  C            P+ YTY+I+  
Sbjct: 158 VFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITA 217

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
              +  R +  +    EM   G++      + +IDG+ +    +E+      MV S G  
Sbjct: 218 GLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV-SCGIP 276

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
            ++ T N +I      G +EK  +       +G K + +T  +L + Y R     +   +
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALEL 336

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +D M+KR   P+ V+Y  +I        +    +  +KM   G+KPN + Y +L+  Y+ 
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G I +   +L  +  S V  D   +N IIS   +AG +E+     L ++ R   PD +T
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456

Query: 434 FATMIQAYNALG-MTEAAQ 451
           F   I  Y+  G MTEAA+
Sbjct: 457 FGAFILGYSKTGKMTEAAK 475



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 155/327 (47%), Gaps = 38/327 (11%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT +  +  L K  + ++A  +F  +   GL P V  Y++L+S + + G +++AF  ++D
Sbjct: 525 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-LHD 583

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
              +    P+++ Y+ L+    K        K+   M   G+E  +VTY+T+IDGY K++
Sbjct: 584 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E  S F  M  S G  P  F  N+++      G++EK    + E             
Sbjct: 644 NVAEAFSLFHEM-PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFRE------------- 689

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
                                 +QK   F T +++N +I+ + K+  I++  + F++M  
Sbjct: 690 ---------------------MLQKG--FATTLSFNTLIDGYCKSCKIQEASQLFQEMIA 726

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           + + P+ +TY +++  + KAG + + + + ++++  ++I+DT  +  ++  Y + G   +
Sbjct: 727 KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSE 786

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
           +  LF  M  +   PD +T+  +I A+
Sbjct: 787 VFALFEKMVAKGVKPDEVTYGLVIYAH 813



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 166/369 (44%), Gaps = 9/369 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLK 146
           +K  + Q ALK+F  L+++         FT   ++ G CKQ E  +A  L + M   G+ 
Sbjct: 535 LKNGRVQEALKVFSELKEKGLVP---DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P++ +Y ALV    +SG +  A    + M      +PD  TYS +I    K         
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPE-KGLEPDSVTYSTMIDGYCKSENVAEAFS 650

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G++  +  YN ++ G  K    E+  + F  M++ G       + N++I  Y
Sbjct: 651 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG--FATTLSFNTLIDGY 708

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             S  I++  + + E     +  D  T   +   + +AG  ++   +   MQ+R      
Sbjct: 709 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 768

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTY  ++  + K G   ++   F+KM  +G+KP+ +TY  ++ A+ K   +++   +  +
Sbjct: 769 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 828

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 445
           V    ++      + +I+A  +  D+ +  +L   M E    P     +T++++++  G 
Sbjct: 829 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK 888

Query: 446 MTEAAQNLE 454
           M EA +  E
Sbjct: 889 MDEATRVFE 897



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 131/309 (42%), Gaps = 40/309 (12%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A  LF+ M   GL+P    Y+ ++  Y +S  + EAFS  ++M S    +
Sbjct: 603 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS-KGVQ 661

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  + Y+ L+  C K    +    +  EM   G   + +++NT+IDGY K+ K +E    
Sbjct: 662 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQL 720

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M+ +    PD  T  ++I  +  +G +E+    + E     +  D  T   L   Y 
Sbjct: 721 FQEMI-AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 779

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-----------------ETFGKA----GH 341
           + G   ++ ++ + M  +   P  VTY +VI                 E  GK     G 
Sbjct: 780 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 839

Query: 342 IEKM--------------EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           I  +               +   +M   G+KP+     +LV ++ +AG + +   +   V
Sbjct: 840 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 899

Query: 388 ENSDVILDT 396
           ++  ++ DT
Sbjct: 900 KSLGLVPDT 908



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T LM    K  Q  +   LFE M++ G+KP    Y  ++ A+ +   L EAF   +++
Sbjct: 770 TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 829

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKA 233
                       + +LI +  K  R DL E  K+L EM  LG++ S    +T++  + +A
Sbjct: 830 VGKGMLTKGT-IHDLLITALCK--REDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEA 886

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            K +E    F   V+S G  PD  TL  +++   N  + E
Sbjct: 887 GKMDEATRVFEG-VKSLGLVPDTTTLIDLVNGNLNDTDSE 925


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 184/375 (49%), Gaps = 3/375 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K+ +   A  +   ++ +  +  R  TF  L+V   +    ++A+ + E+M  + 
Sbjct: 239 LDGLCKKGRLNEARDLLLDMKNKGLFPNR-TTFNILVVGCCRLGWLKEAANVIELMSQNS 297

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P    Y  ++S + + G + EA     +M+++    PDV TY+ LI  C +    +  
Sbjct: 298 VVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLK-LSPDVVTYNTLINGCFEHGSSEEG 356

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K++ EM   G++ ++VTYN ++  + K  K +E++ +   M ESG C PDI T N++IS
Sbjct: 357 FKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESG-CLPDIVTYNTLIS 415

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +   G +++  +  +E    G+K D  TLN + ++  R    D+   ++   ++R +F 
Sbjct: 416 WHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFV 475

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V+Y  +I  + K     +    + +MK + + P+ ITY S+++   + G   +    L
Sbjct: 476 DEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKL 535

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++  S ++ D   +N II  Y Q G VEK  +    M E++  PD +T  T++      
Sbjct: 536 DELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKE 595

Query: 445 GMTEAAQNLENKMIA 459
           GM E A  L N  I+
Sbjct: 596 GMLEKALKLFNTWIS 610



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 5/317 (1%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFSTINDMKSVSDCKP 183
           C +P QA+ +F  M   G++P++     L++A   +  S  +  + +   D   +   K 
Sbjct: 137 CGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIG-VKI 195

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +  +++ILI      +RF    ++L +M   G     +TYNTI+DG  K  +  E     
Sbjct: 196 NTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLL 255

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M ++ G  P+  T N ++      G +++        +   V  D  T N++   + +
Sbjct: 256 LDM-KNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCK 314

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G   +   + + M+     P VVTYN +I    + G  E+  +  ++M+ RGMKPNS+T
Sbjct: 315 QGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVT 374

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  +V  + K G + +VD  +R++E S  + D   +N +IS + + G +++   L   M 
Sbjct: 375 YNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMG 434

Query: 424 ERHCVPDNITFATMIQA 440
            +    D++T  TM++A
Sbjct: 435 RKGLKMDDVTLNTMLRA 451



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 147/315 (46%), Gaps = 8/315 (2%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFD 202
           KP +D+    + AY   G   +A    N MK +   +P + T + L+ +  +F   H   
Sbjct: 124 KPLLDIS---IGAYVACGRPHQAAQIFNRMKRLG-MQPTLLTCNTLLNALVRFPSSHSIR 179

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           L + +  +   +G++ +  ++N +I G     +F E       M + G C PD  T N++
Sbjct: 180 LSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYG-CPPDNITYNTI 238

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +      G + +      +    G+  +  T NIL     R G   +  +V++ M +   
Sbjct: 239 LDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSV 298

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P   TYN++I  F K G I +     ++M++  + P+ +TY +L++   + G   +   
Sbjct: 299 VPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFK 358

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++ ++E   +  ++  +N ++  + + G ++++ +    M+E  C+PD +T+ T+I  + 
Sbjct: 359 LIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHC 418

Query: 443 ALGMTEAAQNLENKM 457
            +G  + A  L ++M
Sbjct: 419 KVGKMDEAFRLMDEM 433



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 3/340 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+   L E M   G+KP+   Y  +V  + + G +DE   T+  M+  S C PD+ TY+ 
Sbjct: 354 EEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEE-SGCLPDIVTYNT 412

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K  + D   +++ EM   G++   VT NT++    + +K +E      +     
Sbjct: 413 LISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCS-ARRR 471

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G   D  +  ++I  Y       +  + ++E     +   I T N +     + G  ++ 
Sbjct: 472 GYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQA 531

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
              +D + +    P  +TYN +I  + + G +EK  ++  KM  +  KP+ +T  +L+  
Sbjct: 532 IDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCG 591

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K G++ K   +     +    +D   +N II +  +     +  +L   M+E+   PD
Sbjct: 592 LCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPD 651

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
             T+  ++      G  + A+   +K IA K  S  + ++
Sbjct: 652 CYTYNAILGGLTDAGRMKDAEEFISK-IAEKGKSENQFLE 690



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR----SVM 314
           L+  I AY   G   +  + +N    +G++  + T N L  +  R      +R       
Sbjct: 127 LDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFT 186

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           DF++      T  ++NI+I          +      KM+  G  P++ITY +++    K 
Sbjct: 187 DFIKIGVKINTN-SFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKK 245

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +   +L  ++N  +  +   FN ++    + G +++   +   M +   VPD  T+
Sbjct: 246 GRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTY 305

Query: 435 ATMIQAYNALGMTEAAQNLENKMIAMK 461
             MI  +   G    A  L  +M  +K
Sbjct: 306 NVMISGFCKQGRIAEAMRLREEMENLK 332



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 11/135 (8%)

Query: 122 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G C+  Q E+A      M+    KP V     L+    + G+L++A    N   S  
Sbjct: 553 IIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG 612

Query: 180 DCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               D  +Y+ +I S  K  R    FDL+E++  E   LG +C   TYN I+ G   A +
Sbjct: 613 K-DVDAVSYNTIILSLCKEKRFGEAFDLLEEM--EEKKLGPDC--YTYNAILGGLTDAGR 667

Query: 236 FEEMESSFSAMVESG 250
            ++ E   S + E G
Sbjct: 668 MKDAEEFISKIAEKG 682


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 241

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 242 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 301

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYV 132

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 157/373 (42%), Gaps = 41/373 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 70  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 128

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 129 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 187

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 188 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 247

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++S G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 248 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 307

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +  I     AG IE+    F++    G   N  
Sbjct: 308 RAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIA 363

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++   SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 364 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 423

Query: 423 KERHCV-PDNITF 434
           +E  CV  D + F
Sbjct: 424 QEVGCVFSDEVHF 436


>gi|255576798|ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531275|gb|EEF33118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 172/353 (48%), Gaps = 5/353 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ +WQ   K+F  +  QQ  +    ++T  M  +GK   P +A  ++  +  + +K +V
Sbjct: 124 KQSRWQDLSKLFDWM--QQHSKISVSSYTSYMKFMGKSLNPAKALEIYNSIADESVKNNV 181

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKIL 208
            +  +++S   +SG  D +    + MK  +   PD  TYS L+  C K    +      +
Sbjct: 182 FICNSVLSCLVRSGKFDISLKLFHKMKQ-NGLTPDTITYSTLLSGCIKAKDGYSKTLDFV 240

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            E+ Y G++   V Y TI+       + EE ES FS M   G   P++F  +S+++AY +
Sbjct: 241 QELKYNGLQMDTVIYGTILAVCASHNRCEEAESYFSQMKNEGHL-PNVFHYSSLLNAYAS 299

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           SGN +K E+   +   +G+  +      L K Y R G+++K + ++  ++   +    + 
Sbjct: 300 SGNYKKAEELVQDMKSLGLVPNKVIWTTLLKVYVRGGLFEKSQQLLLELETLGYAEDEMP 359

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y ++++   KAG +++   +F +MK + +K +   Y  ++SAY +  L+ +   + ++ E
Sbjct: 360 YCLLMDGLSKAGRVDEARSFFDEMKEKNVKSDGYAYSIMISAYCRGRLLEEAKQLAKEFE 419

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                 D    N ++ AY +AGD+E + +    M E    P   TF  +I+ +
Sbjct: 420 AKYDKYDVVILNTMLCAYCRAGDMESVMQTMRKMDELAISPSYCTFHILIKYF 472



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 141/341 (41%), Gaps = 37/341 (10%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
           + Q    ++  LGK  + +  S LF+ M     K SV  YT+ +   G+S    +A    
Sbjct: 111 KAQDLNVILRNLGKQSRWQDLSKLFDWMQQHS-KISVSSYTSYMKFMGKSLNPAKALEIY 169

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           N +   S  K +V+  + ++    +  +FD+  K+  +M   G+    +TY+T++ G  K
Sbjct: 170 NSIADES-VKNNVFICNSVLSCLVRSGKFDISLKLFHKMKQNGLTPDTITYSTLLSGCIK 228

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           AK        F   ++  G   D     ++++   +    E+ E ++++           
Sbjct: 229 AKDGYSKTLDFVQELKYNGLQMDTVIYGTILAVCASHNRCEEAESYFSQ----------- 277

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
                                   M+     P V  Y+ ++  +  +G+ +K EE  + M
Sbjct: 278 ------------------------MKNEGHLPNVFHYSSLLNAYASSGNYKKAEELVQDM 313

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  G+ PN + + +L+  Y + GL  K   +L ++E      D   +  ++    +AG V
Sbjct: 314 KSLGLVPNKVIWTTLLKVYVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRV 373

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++    F  MKE++   D   ++ MI AY    + E A+ L
Sbjct: 374 DEARSFFDEMKEKNVKSDGYAYSIMISAYCRGRLLEEAKQL 414



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A   F  M ++G  P+V  Y++L++AY  SG   +A   + DMKS+    P+   ++ 
Sbjct: 269 EEAESYFSQMKNEGHLPNVFHYSSLLNAYASSGNYKKAEELVQDMKSLG-LVPNKVIWTT 327

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+K   +   F+  +++L E+  LG     + Y  ++DG  KA + +E  S F  M E  
Sbjct: 328 LLKVYVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMKEKN 387

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
               D +  + MISAY     +E+ ++   EF     K D+  LN +  +Y RAG  + +
Sbjct: 388 -VKSDGYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDVVILNTMLCAYCRAGDMESV 446

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              M  M +    P+  T++I+I+ F K        +  + M  +G +P     CS++
Sbjct: 447 MQTMRKMDELAISPSYCTFHILIKYFCKQKLYLLAYQTMEDMHRKGHQPEE-ELCSML 503



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/292 (19%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKP 147
           ++  K+ ++LK+F  ++Q         T++ L+    K K     +L F + +  +GL+ 
Sbjct: 192 VRSGKFDISLKLFHKMKQNGL-TPDTITYSTLLSGCIKAKDGYSKTLDFVQELKYNGLQM 250

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
              +Y  +++        +EA S  + MK+     P+V+ YS L+ +      +   E++
Sbjct: 251 DTVIYGTILAVCASHNRCEEAESYFSQMKNEGHL-PNVFHYSSLLNAYASSGNYKKAEEL 309

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI-FTLNSMISAY 266
           + +M  LG+  + V + T++  Y +   FE+ +     +   G    ++ + L  ++   
Sbjct: 310 VQDMKSLGLVPNKVIWTTLLKVYVRGGLFEKSQQLLLELETLGYAEDEMPYCL--LMDGL 367

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +G +++   +++E     VK+D    +I+  +Y R  + ++ + +    + ++    V
Sbjct: 368 SKAGRVDEARSFFDEMKEKNVKSDGYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDV 427

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           V  N ++  + +AG +E + +  +KM    + P+  T+  L+  + K  L +
Sbjct: 428 VILNTMLCAYCRAGDMESVMQTMRKMDELAISPSYCTFHILIKYFCKQKLYL 479


>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
          Length = 482

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 170/380 (44%), Gaps = 42/380 (11%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           LE +D  + Q++    + +F  +++Q+WY A    ++KL+ ++G+  Q   A  LF  M 
Sbjct: 78  LEGVD--VDQQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMR 135

Query: 142 SDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
           + G +P   VY +L+ A+     +S  L +A      MK++  C+P++            
Sbjct: 136 NSGCRPDTSVYNSLIGAHLHSRDKSKALAKALGYFEKMKTIDRCQPNI------------ 183

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                                  VTYN ++  + +A   ++++  F  + ES    PDI+
Sbjct: 184 -----------------------VTYNILLRAFAQAGDTKQLDILFKDLDESP-VSPDIY 219

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N ++ AYG +G I +ME           + D+ T NIL  SYGR   +DKM  V   +
Sbjct: 220 TYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSL 279

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +    PT  T+N +I  +GKA   EK E    KM   G KPN +T   L+  Y+    +
Sbjct: 280 LRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCV 339

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   I  ++ +S   +     N ++ AY   G   +  +L  ++ ++  VP   T+  +
Sbjct: 340 SRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLL 399

Query: 438 IQAYNALGMTEAAQNLENKM 457
            +AY      +  Q L  +M
Sbjct: 400 YKAYTKANDKKLIQKLLKRM 419



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 31/238 (13%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K        
Sbjct: 111 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CRPDTSVYNSLIGAHLHSRDKSK-------- 161

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
                         L K+ G    ++KM+++ D  Q     P +VTYNI++  F +AG  
Sbjct: 162 -------------ALAKALG---YFEKMKTI-DRCQ-----PNIVTYNILLRAFAQAGDT 199

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           ++++  FK +    + P+  TY  ++ AY K G+I +++S+L +++++    D   FN +
Sbjct: 200 KQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNIL 259

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           I +YG+    +KM ++F ++      P + TF +MI  Y    + E A+ + +KM  M
Sbjct: 260 IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEM 317


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 194/412 (47%), Gaps = 21/412 (5%)

Query: 60  AIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK 119
           A+ N+ KK    + + +   P+L+ L      K+   A+ I  +LR+          F+ 
Sbjct: 109 ALGNVVKK--GFRVEAITFTPLLKGL---CADKRTSDAMDI--VLRRMTELSCMPDVFSC 161

Query: 120 LMVMLGKCKQPE-QASLLFEVMLSDGL----KPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            +++ G C +   Q +L    M++DG      P V  YT +++ + + G   +A+ST ++
Sbjct: 162 TILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHE 221

Query: 175 M--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           M  + +S   PDV TYS +I +  K    D   ++L  M   G+  +  TY +I+ GY  
Sbjct: 222 MLDRRIS---PDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCS 278

Query: 233 AKKFEE----MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           + + +E    ++   S  VE  G  PDI T  +++  Y   G +  M    +     G+ 
Sbjct: 279 SGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIH 338

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D    NIL  +Y + G  D+   V   M+++   P  VTY  VI    K+G +E    Y
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLY 398

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++M   G+ P +I Y SL+          + + ++ ++ +  + L+T FFN II ++ +
Sbjct: 399 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 458

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            G V +  +LF  M      PD IT++T+I  Y   G  + A  L + M+++
Sbjct: 459 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSV 510



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 7/316 (2%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-----LKPSVDVYTALVSAYGQSGLLDEA 168
           C+T+T +M       QP++A    + + SDG     L+P +  Y  L+  Y   G L   
Sbjct: 266 CRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGAL-VG 324

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              + D+   +   PD Y Y+ILI +  K  + D    + ++M   G+   AVTY  +I 
Sbjct: 325 MHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIG 384

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
              K+ + E+    F  M++ G   P     NS+I         E+ E+   E    G+ 
Sbjct: 385 ILCKSGRVEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 443

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            +    N +  S+ + G   +   + D M +    P ++TY+ +I+ +  AG +++  + 
Sbjct: 444 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 503

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              M   G+KPN++TY +L++ Y K   +     + +++E+S V  D   +N I+    Q
Sbjct: 504 LSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQ 563

Query: 409 AGDVEKMGELFLTMKE 424
                   EL++ + E
Sbjct: 564 TRRTAAAKELYVRITE 579



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 150/371 (40%), Gaps = 36/371 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A L FE M+ +GL P  
Sbjct: 353 KQGKVDEAMLVFSKMRQQGL-NPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 411

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+         + A   I +M     C                            
Sbjct: 412 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 471

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TYS LI       + D   K+L+ M  +G++ + VTY T+I+GY K  +
Sbjct: 472 MVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISR 531

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 532 MGDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 590

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     +  + D    +   +          T+NI+I+   K G   + ++ F      
Sbjct: 591 IILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSN 650

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN  TY  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + 
Sbjct: 651 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 710

Query: 416 GELFLTMKERH 426
           G     + E+H
Sbjct: 711 GTYLSMIDEKH 721



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 153/345 (44%), Gaps = 11/345 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K +  ++A  +   M+ +G+ P+   YT+++  Y  SG   EA   +  +
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKV 292

Query: 176 KS----VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +S        +PD+ TY  L++          +  +L  M   GI      YN +I  Y 
Sbjct: 293 RSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYA 352

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  K +E    FS M + G  +PD  T  ++I     SG +E    ++ +    G+    
Sbjct: 353 KQGKVDEAMLVFSKMRQQG-LNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 411

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
              N L         +++   ++  M  R      + +N +I++  K G + + E+ F  
Sbjct: 412 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 471

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+KP+ ITY +L+  Y  AG + +   +L  + +  +  +T  +  +I+ Y +   
Sbjct: 472 MVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCK--- 528

Query: 412 VEKMGE---LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + +MG+   LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 529 ISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 573



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 152/352 (43%), Gaps = 11/352 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  L+    K  + ++A L+F  M   GL P    Y A++    +SG +++A      M
Sbjct: 343 VYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQM 402

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI      ++++  E+++ EM   GI  + + +N+IID + K  +
Sbjct: 403 ID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 461

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   PDI T +++I  Y  +G +++  K  +    +G+K +  T  
Sbjct: 462 VIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYR 520

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +         +   M+     P ++TYNI+++   +       +E + ++   
Sbjct: 521 TLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITES 580

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  LR  +N    D+ L+   FN +I A  + G  
Sbjct: 581 GTQIELSTYNIILHGLCKNKL---TDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRN 637

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            +  +LF+       VP+  T+  M +     G+ E    L+   ++M++N 
Sbjct: 638 GEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDNG 686



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 151/374 (40%), Gaps = 48/374 (12%)

Query: 131 EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--PDVYT 187
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      K  P V+T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPA--AAVSRYNRMARAGAGKVTPTVHT 89

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE--------- 238
           Y+ILI  C +  R DL    L  +   G    A+T+  ++ G    K+  +         
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 239 -----MESSFSAMV------------------------ESGGCHPDIFTLNSMISAYGNS 269
                M   FS  +                          GG  PD+ +  ++I+ +   
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKE 209

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G+  K    Y+E     +  D+ T + +  +  +    DK   V+  M K    P   TY
Sbjct: 210 GDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTY 269

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-----TYCSLVSAYSKAGLIMKVDSIL 384
             ++  +  +G  ++   + KK++  G++P+ +     TYC+L+  Y+  G ++ + ++L
Sbjct: 270 TSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALL 329

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             +  + +  D   +N +I AY + G V++   +F  M+++   PD +T+  +I      
Sbjct: 330 DLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKS 389

Query: 445 GMTEAAQNLENKMI 458
           G  E A     +MI
Sbjct: 390 GRVEDAMLYFEQMI 403


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 5/351 (1%)

Query: 109  WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
            W  A        +  LG+ K+     LL E+    G  P V  Y+ +V+ Y + G LD+ 
Sbjct: 687  WNVASYNIVIHFVCQLGRIKEAHHLLLLMEL---KGYTPDVISYSTVVNGYCRFGELDKV 743

Query: 169  FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
            +  I  MK     KP+ Y Y  +I    +  +    E+  +EM   GI    V Y T+ID
Sbjct: 744  WKLIEVMKR-KGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 802

Query: 229  GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            G+ K          F  M  S    PD+ T  ++IS +   G++ +  K ++E    G++
Sbjct: 803  GFCKRGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 861

Query: 289  ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
             D  T   L   Y +AG       V + M +    P VVTY  +I+   K G ++   E 
Sbjct: 862  PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 921

Query: 349  FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +M   G++PN  TY S+V+   K+G I +   ++ + E + +  DT  +  ++ AY +
Sbjct: 922  LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 981

Query: 409  AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +G+++K  E+   M  +   P  +TF  ++  +   GM E  + L N M+A
Sbjct: 982  SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 1032



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 164/358 (45%), Gaps = 42/358 (11%)

Query: 120  LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
            L+  + K  + E+A   F  M+  G+ P   VYT L+  + + G +  A     +M S  
Sbjct: 768  LLCRICKLAEAEEA---FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-R 823

Query: 180  DCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            D  PDV TY+ +I    +    D++E  K+  EM   G+E  +VT+  +I+GY KA   +
Sbjct: 824  DITPDVLTYTAIISGFCQIG--DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 881

Query: 238  EMESSFSAMVESG----------------------------------GCHPDIFTLNSMI 263
            +     + M+++G                                  G  P+IFT NS++
Sbjct: 882  DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 941

Query: 264  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            +    SGNIE+  K   EF   G+ AD  T   L  +Y ++G  DK + ++  M  +   
Sbjct: 942  NGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 1001

Query: 324  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            PT+VT+N+++  F   G +E  E+    M  +G+ PN+ T+ SLV  Y     +    +I
Sbjct: 1002 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAI 1061

Query: 384  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             + + +  V  D   +  ++  + +A ++++   LF  MK +       T++ +I+ +
Sbjct: 1062 YKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 1119



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 150/319 (47%), Gaps = 2/319 (0%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T+T ++    +     +A  LF  M   GL+P    +T L++ Y ++G + +AF   N M
Sbjct: 831  TYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM 890

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               + C P+V TY+ LI    K    D   ++L EM  +G++ +  TYN+I++G  K+  
Sbjct: 891  IQ-AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 949

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             EE         E+ G + D  T  +++ AY  SG ++K ++   E    G++  I T N
Sbjct: 950  IEE-AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 1008

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +L   +   GM +    ++++M  +   P   T+N +++ +    +++     +K M  R
Sbjct: 1009 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 1068

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            G+ P+  TY +LV  + KA  + +   + ++++     +    ++ +I  + +     + 
Sbjct: 1069 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 1128

Query: 416  GELFLTMKERHCVPDNITF 434
             E+F  M+      D   F
Sbjct: 1129 REVFDQMRREGLAADKEIF 1147



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 2/285 (0%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            TFT+L+    K    + A  +   M+  G  P+V  YT L+    + G LD A   +++M
Sbjct: 866  TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 925

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   +P+++TY+ ++    K    +   K++ E    G+    VTY T++D Y K+ +
Sbjct: 926  WKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 984

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             ++ +     M+   G  P I T N +++ +   G +E  EK  N     G+  +  T N
Sbjct: 985  MDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1043

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
             L K Y          ++   M  R   P   TY  +++   KA ++++    F++MK +
Sbjct: 1044 SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 1103

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            G   +  TY  L+  + K    ++   +  Q+    +  D   F+
Sbjct: 1104 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 1148



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 87/174 (50%), Gaps = 1/174 (0%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + EF  +GV  ++ + NI+     + G   +   ++  M+ + + P V++Y+ V+  + +
Sbjct: 677 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 736

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G ++K+ +  + MK +G+KPNS  Y S++    +   + + +    ++    ++ DT  
Sbjct: 737 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVV 796

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
           +  +I  + + GD+    + F  M  R   PD +T+  +I  +  +G M EA +
Sbjct: 797 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 850


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 2/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++  +    K  + ++A  L   M   G+KP+V VY+A +SA  + G  + A   + +M
Sbjct: 223 TYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM 282

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +V    PDV TYS +I +C K  +++   ++L EM   G+  + +TY+ +I    K  +
Sbjct: 283 PAVG-LAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQ 341

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +EE  +    M E+G   PD+ T +S ISA    G  E+      E  + GV  +  +  
Sbjct: 342 WEEAVALLREMQENG-VAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYG 400

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +  + G + +   ++  MQ     P V+ Y+  I+   +A   E+     ++M   
Sbjct: 401 IVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPAT 460

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN I+Y S + A +K G       +LR++    +  D   ++ +I++       E+ 
Sbjct: 461 GLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEA 520

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +LF  M+ +   PD ++  T I A    G  E A ++  +M  M
Sbjct: 521 LDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTM 565



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 2/324 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           + + M   G+KP    Y++ ++A G +   + A   +  M +     PDV TYS  I +C
Sbjct: 173 VLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASM-AARGTPPDVLTYSSAIAAC 231

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R+     +L  M   G++ + + Y+  I    K  ++E        M  + G  PD
Sbjct: 232 AKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM-PAVGLAPD 290

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T +++I A    G  E   +   E    GV A+I T +I+  +  + G +++  +++ 
Sbjct: 291 VITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLR 350

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ+    P V+TY+  I    K G  E+     ++M   G+ PN+I+Y  ++SA +K G
Sbjct: 351 EMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRG 410

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
              +   +L++++   V  D   ++  I A  QA   E+   L   M      P+ I++ 
Sbjct: 411 RWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 436 TMIQAYNALGMTEAAQNLENKMIA 459
           + I A    G ++ A  L  +M A
Sbjct: 471 SAIDACAKTGRSKIAVELLREMPA 494



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 153/353 (43%), Gaps = 10/353 (2%)

Query: 93  KWQLALKIFGLLR--QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           KW    +   LLR  Q+        T++  +    K  Q E+A  L   M  +G+ P+  
Sbjct: 338 KWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAI 397

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  ++SA  + G   EA   + +M++     PDV  YS  I +C +  R++    +L E
Sbjct: 398 SYGIVISACAKRGRWREAIDLLQEMQA-HGVPPDVINYSAAIDACAQASRWEQALWLLRE 456

Query: 211 MSYLGIECSAVTYNTIIDG---YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           M   G+  + ++YN+ ID     G++K   E+     A     G  PD+ T +++I++  
Sbjct: 457 MPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAH----GLAPDVITYSAVIASCA 512

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
                E+    + E    G+  D+ + N    +  + G +++   V+  M      P  +
Sbjct: 513 MGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAI 572

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           +Y   I+   K    +++ +  ++M   G+ P++I+Y   +SA S  GL  +   +LR +
Sbjct: 573 SYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDM 632

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
               +  D   +N  I+A  + G  ++   L   M      PD  +F   I A
Sbjct: 633 LAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDA 685



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 155/345 (44%), Gaps = 2/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++    K  Q E A  L   M + G+  ++  Y+ ++ A  + G  +EA + + +M
Sbjct: 293 TYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREM 352

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  +   PDV TYS  I +C K  +++    +L EM   G+  +A++Y  +I    K  +
Sbjct: 353 QE-NGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGR 411

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           + E       M ++ G  PD+   ++ I A   +   E+      E    G+  ++ + N
Sbjct: 412 WREAIDLLQEM-QAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               +  + G       ++  M      P V+TY+ VI +       E+  + F++M+ +
Sbjct: 471 SAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQ 530

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ ++  + ++A ++ G   +   +L ++    ++ D   +   I A  +    +++
Sbjct: 531 GITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEI 590

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +L   M      PD I++   + A +  G+ + A  L   M+A+
Sbjct: 591 IDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAV 635



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%)

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G + K   V+D MQ++   P    Y+  I   G A   E+  E    M  RG  P+ +TY
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            S ++A +K     +   +LR ++   V  +   ++  ISA  + G  E   +L   M  
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPA 284

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               PD IT++T+I A    G  E A  L  +M
Sbjct: 285 VGLAPDVITYSTVIDACAKRGQWEPAFRLLMEM 317


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 162/328 (49%), Gaps = 2/328 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E     FE M  +   P+V  Y  ++ AY +   +DEAF  +  M  +   +P++ TY++
Sbjct: 220 EMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM-GLEGLEPNLLTYNM 278

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    +  R +    +LAEM   G     VTYNT+++GY K   F +     S M+ +G
Sbjct: 279 VINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNG 338

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD+ T  S+I+    +GN+ +  +++++ ++ G++ +  T   L   + + G  D+ 
Sbjct: 339 -LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEA 397

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             + D M +  F PT+VTYN ++     +G +E+     + M+ +G+ P+ ++Y ++++ 
Sbjct: 398 YRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAG 457

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + +   + +   +  ++    V  D   ++ +I    +   + +  +LF  M  +  +PD
Sbjct: 458 FCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPD 517

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMI 458
             T+ ++I  Y   G    A NL ++MI
Sbjct: 518 EFTYTSLINGYCKEGDLNEALNLHDEMI 545



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V++Y+ILI+        ++  +   EM       + VTYNT+I  Y K K+ +E   +F
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDE---AF 258

Query: 244 SAMVESG--GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
             +   G  G  P++ T N +I+     G IE+      E +  G   D  T N L   Y
Sbjct: 259 KLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGY 318

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G + +   +   M +    P VVTY  +I T  KAG++ +  E+F +M  RG++PN 
Sbjct: 319 CKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNG 378

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY SL++ +S+ G + +   I  ++  S        +N +++ +  +G +E+   L   
Sbjct: 379 VTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG 438

Query: 422 MKERHCVPDNITFATMIQAY 441
           M+ +   PD ++++T+I  +
Sbjct: 439 MEGKGLSPDVVSYSTIIAGF 458



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 23/351 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  + K     +A   F+ M   GL+P+   YT+L++ + Q G +DEA+   ++M
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   P + TY+ L+       R +    +L  M   G+    V+Y+TII G+ +   
Sbjct: 405 IR-SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR--- 460

Query: 236 FEEMESSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           ++E++ +F   + MVE G   PD  T +S+I        + +    + E     +  D  
Sbjct: 461 YQELDRAFQMNAEMVEKG-VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEF 519

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   L   Y + G  ++  ++ D M K+ F P  VTYN++I    K     + +    K+
Sbjct: 520 TYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL 579

Query: 353 KHRGMKPNSITY------CS---------LVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
            +    PN ITY      CS         L+  +   GL+ + D +   +   +   +  
Sbjct: 580 FYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEA 639

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            +N II  + + G+V K  +L+  M +   +P  +T   +++A  + GM E
Sbjct: 640 VYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDE 690



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 155/342 (45%), Gaps = 4/342 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LLR            T  MV+ G C+  + E+ S +   M   G  P    Y  LV+ 
Sbjct: 258 FKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNG 317

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G   +A    ++M   +   PDV TY+ LI +  K    +   +   +M   G+  
Sbjct: 318 YCKVGNFHQALVLHSEMLR-NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRP 376

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + VTY ++I+G+ +    +E    +  M+ SG   P I T N++++ +  SG +E+    
Sbjct: 377 NGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG-FPPTIVTYNALLNGHCVSGRMEEAIGL 435

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                  G+  D+ + + +   + R    D+   +   M ++   P  +TY+ +I+   +
Sbjct: 436 LRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCE 495

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              + +  + F++M ++ + P+  TY SL++ Y K G + +  ++  ++     + DT  
Sbjct: 496 QRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +N +I+   +     +   L L +     +P+ IT+ T+I++
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIES 597



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 151/364 (41%), Gaps = 52/364 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +    ++A  +++ M+  G  P++  Y AL++ +  SG ++EA   +  M
Sbjct: 380 TYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGM 439

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PDV +YS +I    ++   D   ++ AEM   G+   A+TY+++I G  + ++
Sbjct: 440 EG-KGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRR 498

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M+      PD FT  S+I+ Y   G++ +    ++E    G   D  T N
Sbjct: 499 LNEACDLFQEMLNKS-LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYN 557

Query: 296 ILT--------------------------------------------------KSYGRAG 305
           +L                                                   K +   G
Sbjct: 558 VLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKG 617

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + ++   V + M KR   P    YN++I    + G++ K  + +K+M   G  P+++T  
Sbjct: 618 LMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTII 677

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +LV A    G+  +++ ++R +  S  + D      ++    + G+++ +  L   M + 
Sbjct: 678 ALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKD 737

Query: 426 HCVP 429
             +P
Sbjct: 738 GFLP 741



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKIL--AEMSYL-GIECSAVTYNTIIDGYGKAKK-F 236
           C      + +++KSC+     + IEK L   +++ L G     ++YN I+D   + +K  
Sbjct: 128 CNSSSAVFDLVVKSCS---YLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPV 184

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              E  +  M+ S G   ++F+ N +I  +  +GN+E   +++ E        ++ T N 
Sbjct: 185 IFAEKVYREMIAS-GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNT 243

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +  +Y +    D+   ++  M      P ++TYN+VI    + G IE+      +M  +G
Sbjct: 244 VIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKG 303

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             P+ +TY +LV+ Y K G   +   +  ++  + +  D   +  +I+   +AG++ +  
Sbjct: 304 FAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAM 363

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           E F  M  R   P+ +T+ ++I  ++  G  + A  + ++MI
Sbjct: 364 EFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMI 405


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISI 72

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYV 131

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 69  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 127

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 128 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 186

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 187 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 245

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 246 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 303

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 304 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 360 DITVFERMIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 419

Query: 455 NKM 457
            +M
Sbjct: 420 MEM 422


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 190/413 (46%), Gaps = 42/413 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLS 142
           +D   K+ + + A+++ G ++++   +     ++ L+   G C +   ++   LF+ ML 
Sbjct: 52  MDGLCKEGRVEEAMRLLGEMKRKGL-EVDVVVYSTLIS--GFCSKGCLDRGKALFDEMLE 108

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-- 200
            G+ P+V VY+ L++ + + GL  EA + ++ M      +PDVYTY+ +I    K  R  
Sbjct: 109 KGISPNVVVYSCLINGFCKKGLWREATAVLHTMTE-RGIQPDVYTYTCMIGGLCKDGRAR 167

Query: 201 -----FDLIE----------------------------KILAEMSYLGIECSAVTYNTII 227
                FDL+                             KI   M   G     V+YNT+I
Sbjct: 168 KALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLI 227

Query: 228 DGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
            G     K +E    FS+++E G    PD+ T N++I      G ++K  + Y+     G
Sbjct: 228 MGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              ++ T +IL   Y ++G+ DK   +   + K    P+  TY+++I+ F K   +   +
Sbjct: 288 SFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAK 347

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F +MK  G+ P    Y +L+++  K   + +   + ++++ S+   DT  FN +I   
Sbjct: 348 GLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGT 407

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +AGD+    EL   M++    PD  T+++ I   + LG  E A+   + MIA
Sbjct: 408 LKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIA 460



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 3/278 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD+ +Y+ +I    K  R +    +L EM     E ++ TY  ++DG  K  + EE    
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M +  G   D+   +++IS + + G +++ +  ++E    G+  ++   + L   + 
Sbjct: 68  LGEM-KRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G++ +  +V+  M +R   P V TY  +I    K G   K  + F  M  +G +P+++
Sbjct: 127 KKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTV 186

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L++   K G I     I   +      L+   +N +I      G +++  +LF ++
Sbjct: 187 TYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSL 246

Query: 423 KE--RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            E   +  PD ITF T+IQ     G  + A  + + MI
Sbjct: 247 LEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMI 284



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 46/355 (12%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKP 147
           K  + + AL +F L+ ++    +   T T  +++ G CK+     A  +FE ML  G + 
Sbjct: 162 KDGRARKALDLFDLMTEKGEEPS---TVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRL 218

Query: 148 SVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD-- 202
            V  Y  L+     +G LDEA   FS++  ++  +  +PDV T++ +I+   K  R D  
Sbjct: 219 EVVSYNTLIMGLCNNGKLDEAMKLFSSL--LEDGNYVEPDVITFNTVIQGLCKEGRLDKA 276

Query: 203 ------LIEK---------------------------ILAEMSYLGIECSAVTYNTIIDG 229
                 +IE+                           +   +  LG+  S+ TY+ +IDG
Sbjct: 277 VEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDG 336

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K       +  FS M  SG   P +F  N+++++     ++E+  + + E      + 
Sbjct: 337 FCKMHMLNFAKGLFSRMKISG-LSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEP 395

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  + NI+     +AG     + +++ MQ+    P   TY+  I    K G +E+ +  F
Sbjct: 396 DTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAF 455

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             M   G+ P++  Y SL+  +     I +V ++LRQ+ +  VILD    N I++
Sbjct: 456 DSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILT 510



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 174/425 (40%), Gaps = 54/425 (12%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+  W+ A  +   +  ++  Q    T+T ++  L K  +  +A  LF++M   G +PS 
Sbjct: 127 KKGLWREATAVLHTM-TERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPST 185

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD----LIE 205
             Y  L++   + G + +AF     M      + +V +Y+ LI       + D    L  
Sbjct: 186 VTYNVLINGLCKEGCIGDAFKIFETMLEKGK-RLEVVSYNTLIMGLCNNGKLDEAMKLFS 244

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +L + +Y  +E   +T+NT+I G  K  + ++    +  M+E G    ++FT + +I  
Sbjct: 245 SLLEDGNY--VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGS-FGNLFTCHILIGE 301

Query: 266 YGNSGNIEK-MEKW----------------------------------YNEFNLMGVKAD 290
           Y  SG I+K ME W                                  ++   + G+   
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPT 361

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +   N L  S  +    ++ R +   M++    P  +++NI+I+   KAG I   +E   
Sbjct: 362 LFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLN 421

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M+  G+ P++ TY S ++  SK G + +       +  S +  D   ++ +I  +G   
Sbjct: 422 DMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLND 481

Query: 411 DVEKMGELFLTMKERHCVPD----NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466
           ++E++  L   M +   + D    N     +  +   L + E   N  +      E+SG 
Sbjct: 482 EIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSS------ESSGG 535

Query: 467 KLIQC 471
             I C
Sbjct: 536 TSISC 540



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 69/141 (48%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P +V+YN +I    K   +EK  +   +M+    +PNS TYC L+    K G 
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + +   +L +++   + +D   ++ +IS +   G +++   LF  M E+   P+ + ++ 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +I  +   G+   A  + + M
Sbjct: 121 LINGFCKKGLWREATAVLHTM 141


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 167/348 (47%), Gaps = 2/348 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T   ++  L K ++ E        M   G+ P V  Y  L++AY + GLL+EAF 
Sbjct: 251 QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 310

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            ++ M S    KP V+TY+ +I    K  ++   + +L EM  +G+     TYN ++   
Sbjct: 311 LMDSM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 369

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +     + E  F  M  S G  PD+ + +++I     +G +++  K++ +    G+  D
Sbjct: 370 CRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 428

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
                IL   + R G+  +   V D M ++     VVTYN ++    K   + + +E F 
Sbjct: 429 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 488

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  RG+ P+  T+ +L++ YSK G + K  ++   +   ++  D   +N +I  + +  
Sbjct: 489 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 548

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++EK+ EL+  M  R   P++I++  +I  Y  +G    A  L ++M+
Sbjct: 549 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 596



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 165/326 (50%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +L K    +QA   F  M + GL P   +YT L+  + ++G++ EA    ++M
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 455

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  DV TY+ ++    K       +++  EM+  G+     T+ T+I+GY K   
Sbjct: 456 LE-QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 514

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  + F  M++     PD+ T N++I  +     +EK+ + +N+     +  +  +  
Sbjct: 515 MNKAVTLFEMMIQRN-LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 573

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y   G   +   + D M ++ F  T++T N +++ + +AG+  K +E+   M  +
Sbjct: 574 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 633

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ ITY +L++ + K   + +  +++ ++ENS ++ D   +N I++ + + G +++ 
Sbjct: 634 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEA 693

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             + L M ER   PD  T+ ++I  +
Sbjct: 694 ELIMLKMIERGVNPDRSTYTSLINGH 719



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 160/361 (44%), Gaps = 39/361 (10%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F V+ S GL  S++   +L+    + G +D A+    ++   S  + +VYT +I+I +  
Sbjct: 207 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR-SGVQVNVYTLNIMINALC 265

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K  + +  +  L++M   G+    VTYNT+I+ Y +    EE      +M    G  P +
Sbjct: 266 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKPCV 324

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMD 315
           FT N++I+    +G   + +   +E   +G+  D  T NIL     R   M D  R + D
Sbjct: 325 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER-IFD 383

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  +   P +V+++ +I    K G +++  +YF+ MK+ G+ P+++ Y  L+  + + G
Sbjct: 384 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 443

Query: 376 -----------------------------------LIMKVDSILRQVENSDVILDTPFFN 400
                                              ++ + D +  ++    V  D   F 
Sbjct: 444 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 503

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I+ Y + G++ K   LF  M +R+  PD +T+ T+I  +      E    L N MI+ 
Sbjct: 504 TLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 563

Query: 461 K 461
           +
Sbjct: 564 R 564



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 156/350 (44%), Gaps = 22/350 (6%)

Query: 110 YQARCQTFTKLMVMLGKCKQ-PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           ++   Q+F+ ++ +L + ++ P+  +++  ++   G+   V++  +LV  YG        
Sbjct: 128 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVS-RVEIVESLVLTYG-------- 178

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
                      +C  +   + +L+++  +  +     +    +   G+  S    N+++ 
Sbjct: 179 -----------NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLG 227

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G  K    +     +  +V SG    +++TLN MI+A   +  IE  + + ++    GV 
Sbjct: 228 GLVKVGWVDLAWEIYQEVVRSG-VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVF 286

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ T N L  +Y R G+ ++   +MD M  +   P V TYN +I    K G   + +  
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M   GM P++ TY  L+    +   +M  + I  ++ +  V+ D   F+ +I    +
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G +++  + F  MK     PDN+ +  +I  +   G+   A  + ++M+
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 456



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 114 CQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           C T  K     G C+     +A      ML  G+ P    Y  L++ + +   +D AF+ 
Sbjct: 607 CNTIVK-----GYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFAL 661

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +N M++ S   PDV TY++++   ++  R    E I+ +M   G+     TY ++I+G+ 
Sbjct: 662 VNKMEN-SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 720

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIF 257
                +E       M++ G    D F
Sbjct: 721 TQNNLKEAFRVHDEMLQRGFVPDDKF 746


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 169/368 (45%), Gaps = 2/368 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K +++  A ++F  +++   +    + +T ++ M  K  + E A  L E M   G  P+V
Sbjct: 242 KLERYDFAFRLFDEMKENGLHPTE-KIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT L+   G+ G +D+A+S   +M     CKPDV   + LI    +  R +   K+  
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLK-DGCKPDVVLINNLINILGRAGRLEDALKLFG 359

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M  L    + VTYNT+I    ++K      + +   +++ G  P  FT   +I  +  +
Sbjct: 360 KMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKT 419

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +EK      E +  G          L  S GRA  Y+    +   +++     +   Y
Sbjct: 420 NRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVY 479

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            ++I+ FG  G +    + F +MK  G  P+  TY +L+S   +AG+I +  S++R +  
Sbjct: 480 AVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRE 539

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           +    D    N I++   + G  ++  E+F  MKE   +PD +++ T++   +  GM E 
Sbjct: 540 NGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEM 599

Query: 450 AQNLENKM 457
           A  L  +M
Sbjct: 600 AAKLMREM 607



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 38/332 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  LGK  + + A  LF  ML DG KP V +   L++  G++G L++A      M
Sbjct: 302 TYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM 361

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
            S+  C P+V                                    +TY+ILI    K +
Sbjct: 362 DSLQ-CAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTN 420

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +    +L EM   G       Y ++ID  G+AK++E     F  + E+ G        
Sbjct: 421 RVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG-RSSARVY 479

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             MI  +GN G +      + E   +G   D+ T N L     RAGM D+  S+M  M++
Sbjct: 480 AVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRE 539

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + ++NI++    K G  ++  E F KMK   + P++++Y +++S  S+AG+   
Sbjct: 540 NGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEM 599

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
              ++R+++      D+  ++ I+ A G+  +
Sbjct: 600 AAKLMREMKLKGFEYDSITYSSILEAVGKVDE 631



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 149/340 (43%), Gaps = 6/340 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +++++ +LGK K   +A  +F  +      P+  VY  L+      G  ++     N++ 
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEIC 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S  +C PD  TYS LI +  K  R+D   ++  EM   G+  +   Y TI+  Y K  K 
Sbjct: 222 SEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKV 281

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTL 294
           E        M +  GC P +FT   +I   G  G ++     +  FN++  G K D+  +
Sbjct: 282 EAALRLVEEM-KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLF--FNMLKDGCKPDVVLI 338

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMK 353
           N L    GRAG  +    +   M      P VVTYN VI+  F       +   +F+KMK
Sbjct: 339 NNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMK 398

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+ P+S TY  L+  + K   + K   +L +++          +  +I + G+A   E
Sbjct: 399 ANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYE 458

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              ELF  +KE         +A MI+ +   G    A +L
Sbjct: 459 AANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDL 498



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 19/390 (4%)

Query: 88  AIKQKKWQLALKIFGLLRQQQ-----WYQARCQ-------TFTKLMVMLGKCKQPEQASL 135
           ++   +W   LKI G  +        +YQ + +        +  L++ML      E+   
Sbjct: 156 SVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHE 215

Query: 136 LFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           L+  + S+G   P    Y+AL+SA+G+    D AF   ++MK  +   P    Y+ ++  
Sbjct: 216 LYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKE-NGLHPTEKIYTTILAM 274

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K ++ +   +++ EM   G   +  TY  +I G GK  + ++  S F  M++  GC P
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKD-GCKP 333

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS-YGRAGMYDKMRSV 313
           D+  +N++I+  G +G +E   K + + + +    ++ T N + K+ +       +    
Sbjct: 334 DVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALW 393

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            + M+     P+  TY I+I+ F K   +EK     ++M  +G  P    YCSL+ +  +
Sbjct: 394 FEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGR 453

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           A      + + ++++ +        +  +I  +G  G +    +LF  MK+  C PD  T
Sbjct: 454 AKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYT 513

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +  ++      GM + A +L   M  M+EN
Sbjct: 514 YNALMSGMIRAGMIDEAHSL---MRNMREN 540



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 42/293 (14%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y AL+    +SGL+DE + TI DM                I+S                
Sbjct: 126 TYMALIRCLEESGLVDEMWRTIQDM----------------IRS---------------- 153

Query: 211 MSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
                  CS     ++ I+   GKAK   +  S F   ++   C+P     N++I    +
Sbjct: 154 ------PCSVGPAEWSEILKILGKAKMVNKALSVFY-QIKGRKCNPTATVYNTLILMLMH 206

Query: 269 SGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            G+ EK+ + YNE    G    D  T + L  ++G+   YD    + D M++    PT  
Sbjct: 207 EGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEK 266

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y  ++  + K   +E      ++MK +G  P   TY  L+    K G +    S+   +
Sbjct: 267 IYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM 326

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                  D    N +I+  G+AG +E   +LF  M    C P+ +T+ T+I+A
Sbjct: 327 LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKA 379



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++ F     TY  +I    ++G +++M    + M           +  ++    KA ++
Sbjct: 116 KRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMV 175

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPDNITFAT 436
            K  S+  Q++          +N +I      G  EK+ EL+  +  E +C PD IT++ 
Sbjct: 176 NKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSA 235

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKEN 463
           +I A+  L   + A  L ++   MKEN
Sbjct: 236 LISAFGKLERYDFAFRLFDE---MKEN 259


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 157/325 (48%), Gaps = 1/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    +QA+ + E M ++G +P +  Y  L +   Q+G +DEAF   ++M
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM 335

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +    PDV TY+ L  +C K        ++L EM   G++ + VT+N +I G  K  +
Sbjct: 336 ERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGE 395

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E      + M + G   PD+ T N++I A+  +GNI K     +E    G+K D  TLN
Sbjct: 396 LEGALGCLNKMADDG-LAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLN 454

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  +   Y++ + ++    +R F P  V+Y  V+  + K  + E     + +M  +
Sbjct: 455 TVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEK 514

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+  TY +L+   S+ G + +    L ++    ++ D   +N II AY + GD+E  
Sbjct: 515 KLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENA 574

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
            +    M E    PD +T  T++  
Sbjct: 575 FQFHNKMVENSFKPDVVTCNTLMNG 599



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 183/391 (46%), Gaps = 6/391 (1%)

Query: 75  NLWPKPVLEALDEAIKQKKW-QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE-Q 132
           NL   P+ +A   A  + +   LA ++   LR++   +   Q    ++  L +      Q
Sbjct: 127 NLPSTPLADAALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQAANAVLSALARSPSTSPQ 186

Query: 133 ASL-LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           ASL  F  +++  L P+   +  LV  +   G L +A ST++ M+      PD  TY+ L
Sbjct: 187 ASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFG-LSPDAVTYNTL 245

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           + +  +         +LA M   G+  +  TYNT++  Y +    ++      AM  + G
Sbjct: 246 LNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMT-ANG 304

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKM 310
             PD++T N + +    +G +++  +  +E   +G +  D+ T N L  +  +       
Sbjct: 305 FEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDA 364

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M+++    T+VT+NIVI+   K G +E       KM   G+ P+ ITY +L+ A
Sbjct: 365 LRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHA 424

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + KAG I K  +++ ++    + LDT   N ++    +    E+   L  +  +R  +PD
Sbjct: 425 HCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPD 484

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +++ T++ AY     +E A  L ++MI  K
Sbjct: 485 EVSYGTVMAAYFKEYNSEPALRLWDEMIEKK 515



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 175/408 (42%), Gaps = 24/408 (5%)

Query: 60  AIKNIEKKVSSKKYKNLWPKPVLEA-------LDEAIKQKKWQLALKIFGLLRQQQWYQA 112
           A K +E   ++    +LW   VL A       +DEA + K     ++  G L        
Sbjct: 293 ATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKD---EMERLGTLLPD----- 344

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
              T+  L     KC+    A  L E M   G+K ++  +  ++    + G L+ A   +
Sbjct: 345 -VVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCL 403

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           N M       PDV TY+ LI +  K         ++ EM   G++    T NT++    K
Sbjct: 404 NKMAD-DGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            K++EE +    +  + G   PD  +  ++++AY    N E   + ++E     +   I 
Sbjct: 463 EKRYEEAQGLLQSPPQRG-FMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIS 521

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L K   R G   +    ++ + ++   P   TYNI+I  + K G +E   ++  KM
Sbjct: 522 TYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKM 581

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQA 409
                KP+ +T  +L++     G   K+D  L+  E+       +D   +N +I    + 
Sbjct: 582 VENSFKPDVVTCNTLMNGLCLNG---KLDKALKLFESWVEKGKKVDVITYNTLIQTMCKD 638

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           GDV+     F  M+ R   PD  T+  ++ A +  G TE AQN+ +K+
Sbjct: 639 GDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKL 686



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 146/328 (44%), Gaps = 39/328 (11%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYG 160
           LL + +    +    T  +V+ G CK  E    L     M  DGL P V  Y  L+ A+ 
Sbjct: 367 LLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHC 426

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA----------E 210
           ++G + +A++ +++M      K D +T + ++ +  K  R++  + +L           E
Sbjct: 427 KAGNIAKAYTLMDEMVR-RGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDE 485

Query: 211 MSYLGIEC-------------------------SAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +SY  +                           S  TYNT+I G  +  + +E     + 
Sbjct: 486 VSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNE 545

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           ++E G   PD  T N +I AY   G++E   +++N+      K D+ T N L       G
Sbjct: 546 LMEKGLV-PDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNG 604

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             DK   + +   ++     V+TYN +I+T  K G ++    +F  M+ RG++P++ TY 
Sbjct: 605 KLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYN 664

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVI 393
            ++SA S+AG   +  ++L ++  S  +
Sbjct: 665 VVLSALSEAGRTEEAQNMLHKLAESGTL 692



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 14/276 (5%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           K + L+ +      +  TFT   V+   CK+   E+A  L +     G  P    Y  ++
Sbjct: 433 KAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVM 492

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +AY +    + A    ++M       P + TY+ LIK  ++  R       L E+   G+
Sbjct: 493 AAYFKEYNSEPALRLWDEMIE-KKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGL 551

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN II  Y K    E      + MVE+    PD+ T N++++    +G ++K  
Sbjct: 552 VPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENS-FKPDVVTCNTLMNGLCLNGKLDKAL 610

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K +  +   G K D+ T N L ++  + G  D        M+ R   P   TYN+V+   
Sbjct: 611 KLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSAL 670

Query: 337 GKAGHIEKMEEYFKKMKHRG----------MKPNSI 362
            +AG  E+ +    K+   G          +KP+S+
Sbjct: 671 SEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSV 706



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 12/322 (3%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK------SCTK 197
           G  PS  +  A +SAY +  L   A   ++ ++     +P +   + ++       S + 
Sbjct: 126 GNLPSTPLADAALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQAANAVLSALARSPSTSP 185

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
               D    I+A    L +  +  T+N ++  +       +  S+ S M +  G  PD  
Sbjct: 186 QASLDAFRSIVA----LRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDAV 240

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N++++A+   G + +           GV     T N L  +Y R G   +   V++ M
Sbjct: 241 TYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAM 300

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGL 376
               F P + TYN++     +AG +++      +M+  G + P+ +TY +L  A  K   
Sbjct: 301 TANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRC 360

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                 +L ++    V       N +I    + G++E        M +    PD IT+ T
Sbjct: 361 SSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNT 420

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           +I A+   G    A  L ++M+
Sbjct: 421 LIHAHCKAGNIAKAYTLMDEMV 442



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 5/259 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T  K +  +G+ K  E    L E+M   GL P    Y  ++ AY + G L+ AF   N 
Sbjct: 524 NTLIKGLSRMGRLK--EAIDKLNELM-EKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNK 580

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M   S  KPDV T + L+       + D   K+       G +   +TYNT+I    K  
Sbjct: 581 MVENS-FKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDG 639

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +     F+ M E+ G  PD FT N ++SA   +G  E+ +   ++    G  +   + 
Sbjct: 640 DVDTALHFFADM-EARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSS 698

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            +L  S        K     +   +         Y  ++     +G  ++ +    +M  
Sbjct: 699 PLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQ 758

Query: 355 RGMKPNSITYCSLVSAYSK 373
           +GM  +S TY +L+    K
Sbjct: 759 KGMSVDSSTYITLMEGLVK 777


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 163/335 (48%), Gaps = 5/335 (1%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L++ L + K+ E+A +L   M   G+KP+   Y A ++ Y +SG +  A     DM S S
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS-S 585

Query: 180 DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
              P+   Y+ILIK  C   +  + +      M   G+      Y+ II    K  K +E
Sbjct: 586 GIVPNNVIYTILIKGHCDVGNTVEALSTFKC-MLEKGLIPDIRAYSAIIHSLSKNGKTKE 644

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               F   +++G   PD+F  NS+IS +   G+IEK  + Y+E    G+  +I   N L 
Sbjct: 645 AMGVFLKFLKTG-VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               + G   K R + D ++++   P VVTY+ +I+ + K+G++ +  + F +M  +G+ 
Sbjct: 704 NGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGIS 763

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   YC L+    K G + K  S+  + +   V      FN +I ++ + G V +  EL
Sbjct: 764 PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEAREL 822

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           F  M ++   P+ +T+  +I AY    M E A+ L
Sbjct: 823 FDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 857



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 156/321 (48%), Gaps = 5/321 (1%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSC 195
           F+ ML  GL P +  Y+A++ +  ++G   EA      +K + +   PDV+ Y+ LI   
Sbjct: 614 FKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVF--LKFLKTGVVPDVFLYNSLISGF 671

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    +   ++  EM + GI  + V YNT+I+G  K  +  +    F   +E     PD
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDE-IEEKDLVPD 730

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T +++I  Y  SGN+ +  K ++E    G+  D     IL    G+ G  +K  S+  
Sbjct: 731 VVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH 790

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
             Q++    ++  +N +I++F K G + +  E F  M  + + PN +TY  L+ AY KA 
Sbjct: 791 EAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAE 849

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++ + + +   +E  ++I +T  +  ++ +Y Q G+  KM  LF  M+ R    D I + 
Sbjct: 850 MMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYG 909

Query: 436 TMIQAYNALGMTEAAQNLENK 456
            M  AY   G +  A  L NK
Sbjct: 910 VMASAYCKEGKSLEALKLLNK 930



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 171/367 (46%), Gaps = 12/367 (3%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           A+DEA++ KK          L  ++       T+T L+    K K+ ++A L+FE M S 
Sbjct: 291 AVDEALEVKK----------LMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P+   YTAL+  + + G ++EA   I D       K +V TY+ +I    K      
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALR-IKDEMITRGLKLNVVTYNAMIGGIAKAGEMAK 399

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +  EM   G+E    TYN +IDGY K+    +      A +++    P  FT + +I
Sbjct: 400 AMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAK-ACELLAEMKARKLTPSPFTYSVLI 458

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S   +S +++K  +  ++    GVK ++     L K+Y +   Y+    ++  M      
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P +  YN +I    +A  +E+ +     M  +G+KPN+ TY + ++ YSK+G I   +  
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            + + +S ++ +   +  +I  +   G+  +    F  M E+  +PD   ++ +I + + 
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638

Query: 444 LGMTEAA 450
            G T+ A
Sbjct: 639 NGKTKEA 645



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 3/296 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + ++ ++  L K  + ++A  +F   L  G+ P V +Y +L+S + + G +++A    ++
Sbjct: 627 RAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDE 686

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M   +   P++  Y+ LI    K        ++  E+    +    VTY+TIIDGY K+ 
Sbjct: 687 MLH-NGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSG 745

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E    F  M+ S G  PD +    +I   G  GN+EK    ++E     V   +   
Sbjct: 746 NLTEAFKLFDEMI-SKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAF 803

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  S+ + G   + R + D M  +   P +VTY I+I+ +GKA  +E+ E+ F  M+ 
Sbjct: 804 NSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET 863

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           R + PN++TY SL+ +Y++ G   K+ S+ + +E   +  D   +  + SAY + G
Sbjct: 864 RNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEG 919



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L   M +  L PS   Y+ L+S    S  L +A   ++ M   +  KP+V+ Y  L
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR-NGVKPNVFMYGTL 492

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           IK+  +  R+++  ++L  M   G+      YN +I G  +AKK EE +     M E G 
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG- 551

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+  T  + I+ Y  SG I+  E+++ +    G+  +     IL K +   G   +  
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           S    M ++   P +  Y+ +I +  K G  ++    F K    G+ P+   Y SL+S +
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G I K   +  ++ ++ +  +   +N +I+   + G+V K  ELF  ++E+  VPD 
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDV 731

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           +T++T+I  Y   G    A  L ++MI+
Sbjct: 732 VTYSTIIDGYCKSGNLTEAFKLFDEMIS 759



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 2/314 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           KP++  Y A +    Q+G +DEA   +  +       PD +TY++L+    K  R    +
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALE-VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            I   M   G+  +  TY  +IDG+ K    EE       M+ + G   ++ T N+MI  
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI-TRGLKLNVVTYNAMIGG 390

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
              +G + K    +NE  + G++ D  T N+L   Y ++    K   ++  M+ R   P+
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TY+++I     +  ++K  E   +M   G+KPN   Y +L+ AY +         +L+
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            +  + V+ D   +NC+I    +A  VE+   L + M E+   P+  T+   I  Y+  G
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 446 MTEAAQNLENKMIA 459
             + A+     M++
Sbjct: 571 EIQVAERYFKDMLS 584



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 8/319 (2%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M+   + P V  YT ++ A+ + G + +    +++M+   +CKP+++TY+  I    +  
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK--ECKPNLFTYNAFIGGLCQTG 290

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             D   ++   M   G+     TY  ++DG+ K K+ +E +  F +M  S G +P+ FT 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM-PSSGLNPNRFTY 349

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            ++I  +   GNIE+  +  +E    G+K ++ T N +     +AG   K  S+ + M  
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P   TYN++I+ + K+  + K  E   +MK R + P+  TY  L+S    +  + K
Sbjct: 410 AGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            + +L Q+  + V  +   +  +I AY Q    E   EL   M     +PD   +  +I 
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI- 528

Query: 440 AYNALGMTEAAQNLENKMI 458
               +G+  A +  E KM+
Sbjct: 529 ----IGLCRAKKVEEAKML 543



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 154/329 (46%), Gaps = 7/329 (2%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+   E+AS L++ ML +G+ P++ VY  L++   + G + +A    ++++   D  
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEE-KDLV 728

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV TYS +I    K        K+  EM   GI      Y  +IDG GK    E+  S 
Sbjct: 729 PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788

Query: 243 F-SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           F  A  +S G    +   NS+I ++   G + +  + +++     +  +I T  IL  +Y
Sbjct: 789 FHEAQQKSVG---SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY 845

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+A M ++   +   M+ R   P  +TY  ++ ++ + G+  KM   FK M+ RG+  ++
Sbjct: 846 GKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA 905

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           I Y  + SAY K G  ++   +L +     + L+   F+ +I    +   +  + EL   
Sbjct: 906 IAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSE 965

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
           M +      + T  T++  +   G  + A
Sbjct: 966 MGKEELSLSSKTCNTLLLGFYKSGNEDEA 994



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 8/253 (3%)

Query: 85   LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +D   K+   + AL +F     QQ        F  L+    K  +  +A  LF+ M+   
Sbjct: 773  IDGCGKEGNLEKALSLFH--EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKK 830

Query: 145  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDL 203
            L P++  YT L+ AYG++ +++EA     DM++  +  P+  TY+ L+ S  +  +RF +
Sbjct: 831  LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET-RNIIPNTLTYTSLLLSYNQIGNRFKM 889

Query: 204  IEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            I  +  +M   GI C A+ Y  +   Y K  K  E ++    ++VE      D+F  +++
Sbjct: 890  I-SLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVF--DAL 946

Query: 263  ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
            I        I  + +  +E     +    +T N L   + ++G  D+   V+  MQ+  +
Sbjct: 947  IFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGW 1006

Query: 323  FPTVVTYNIVIET 335
             PT ++    I T
Sbjct: 1007 VPTSLSLTDSIST 1019



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 123/317 (38%), Gaps = 73/317 (23%)

Query: 125  GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
            G CK  E  +A  LF+ +    L P V  Y+ ++  Y +SG L EAF   ++M S     
Sbjct: 705  GLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMIS-KGIS 763

Query: 183  PDVYTYSILIKSCTK----------FHRF------------DLIE------------KIL 208
            PD Y Y ILI  C K          FH               LI+            ++ 
Sbjct: 764  PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELF 823

Query: 209  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             +M    +  + VTY  +ID YGKA+  EE E  F  M E+    P+  T  S++ +Y  
Sbjct: 824  DDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM-ETRNIIPNTLTYTSLLLSYNQ 882

Query: 269  SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG----------------------M 306
             GN  KM   + +    G+  D     ++  +Y + G                      +
Sbjct: 883  IGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDV 942

Query: 307  YD----------KMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +D          ++ +V++    M K     +  T N ++  F K+G+ ++  +    M+
Sbjct: 943  FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQ 1002

Query: 354  HRGMKPNSITYCSLVSA 370
              G  P S++    +S 
Sbjct: 1003 RLGWVPTSLSLTDSIST 1019



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++ + + Y EF      +++   +I    +   G  ++  SV        FFPT++  N 
Sbjct: 157 LDSLVRCYREFG----GSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++    KA  +    + +  M    + P+  TY +++ A+ K G ++K   +L ++E  +
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME-KE 271

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +   +N  I    Q G V++  E+   M E+   PD  T+  ++  +
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 174/374 (46%), Gaps = 17/374 (4%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F      Q  +    TFT LM  L +  +  +A  L + M+ DGL+P+   Y  +V
Sbjct: 69  ALDLF-----HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 123

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G    A + +  M+ +S  KPDV  YS +I    K  R    + +  EM   GI
Sbjct: 124 DGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
               VTY+ +I+G+  + K+ E +     M+      PD+ T + +I+A    G++   +
Sbjct: 184 FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK-ISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAG-------MYDKM-RSVMDFMQKRFFF---PT 325
               E    GV  ++ T N L      +G       M+  M +S+MD      F    P 
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPD 302

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYNI+I      G   + EE +++M HRG+ P+++TY S+++   K   + +   +  
Sbjct: 303 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFD 362

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + +     +   FN +I+ Y +AG V+   ELF  M  R  V + IT+ T+I+ +  +G
Sbjct: 363 SMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVG 422

Query: 446 MTEAAQNLENKMIA 459
               + ++  +MI+
Sbjct: 423 NINGSLDIFQEMIS 436



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 130/275 (47%), Gaps = 11/275 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            A  LF  M   G+ P +  Y+ +++ +  SG   EA   + +M  V    PDV T+S L
Sbjct: 170 DAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEML-VRKISPDVVTFSGL 228

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-- 249
           I +  K    +  + +L EM   G+  + VT NT++DG   + K ++    F AM +S  
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288

Query: 250 --------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
                    G  PD+ T N +IS   N G   + E+ Y E    G+  D  T + +    
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            +    D+   + D M  + F P +VT+N +I  + KAG ++   E F +M  RG+  N+
Sbjct: 349 CKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANA 408

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 409 ITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 13/250 (5%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L + ML   + P V  ++ L++A  + G L+ A   + +M S   C P+V T + L
Sbjct: 205 EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC-PNVVTCNTL 263

Query: 192 IKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           +   C      D +E           I A  ++ G+E    TYN +I G     KF E E
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             +  M   G   PD  T +SMI+       +++  + ++         +I T N L   
Sbjct: 324 ELYEEMPHRG-IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y +AGM D    +   M +R      +TY  +I  F K G+I    + F++M   G+ P+
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 361 SITYCSLVSA 370
           +IT  ++++ 
Sbjct: 443 TITIRNMLTG 452



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 19/290 (6%)

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           N++K       D+Y+++ILIK      +         +++ LG   + VT+NT++ G   
Sbjct: 3   NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             +  E    F  M     C P++ T  ++++     G + +     +     G++ +  
Sbjct: 63  EDRVSEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 117

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
           T   +    G   M D + S ++ ++K        P VV Y+ +I+   K G     +  
Sbjct: 118 TYGTIVD--GMCKMGDTV-SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNL 174

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F +M+ +G+ P+ +TY  +++ +  +G   +   +L+++    +  D   F+ +I+A  +
Sbjct: 175 FIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK 234

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY-------NALGMTEAAQ 451
            GD+    +L   M      P+ +T  T++          +AL M +A Q
Sbjct: 235 EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI++ N +I  + +   +      + +   +G    + T N L        + D++   +
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLC---VEDRVSEAL 70

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D   +    P VVT+  ++    + G + +      +M   G++PN ITY ++V    K 
Sbjct: 71  DLFHQ-MCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 375 GLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           G  +   ++LR++E  S +  D   ++ II    + G       LF+ M+++   PD +T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMK 461
           ++ MI  + + G    AQ L  +M+  K
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRK 217


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 2/316 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ P +  Y  L+SAY   GL++EAF  +N M       P VYTY+ +I    K  +++ 
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG-KGFSPGVYTYNTVINGLCKHGKYER 323

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            +++ AEM   G+   + TY +++    K     E E  FS M  S    PD+   +SM+
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPDLVCFSSMM 382

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S +  SGN++K   ++N     G+  D     IL + Y R GM     ++ + M ++   
Sbjct: 383 SLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCA 442

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             VVTYN ++    K   + + ++ F +M  R + P+S T   L+  + K G +     +
Sbjct: 443 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMEL 502

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            ++++   + LD   +N ++  +G+ GD++   E++  M  +  +P  I+++ ++ A  +
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562

Query: 444 LGMTEAAQNLENKMIA 459
            G    A  + ++MI+
Sbjct: 563 KGHLAEAFRVWDEMIS 578



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           D  + L+    +SG+       +N + S  S+C  +   + +LI++  +  +     +  
Sbjct: 131 DAQSCLLRMIRRSGV--SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAF 188

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             +   G   S    N +I    +    E     +  +  SG    +++TLN M++A   
Sbjct: 189 TLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG-VGINVYTLNIMVNALCK 247

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G +EK+  + ++    GV  DI T N L  +Y   G+ ++   +M+ M  + F P V T
Sbjct: 248 DGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT 307

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN VI    K G  E+ +E F +M   G+ P+S TY SL+    K G +++ + +   + 
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR 367

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           + DV+ D   F+ ++S + ++G+++K    F ++KE   +PDN+ +  +IQ Y   GM  
Sbjct: 368 SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMIS 427

Query: 449 AAQNLENKMI 458
            A NL N+M+
Sbjct: 428 VAMNLRNEML 437



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 162/354 (45%), Gaps = 6/354 (1%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +++  CK+ +  +   +F  M S  + P +  +++++S + +SG LD+A    N +K  +
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE-A 404

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD   Y+ILI+   +     +   +  EM   G     VTYNTI+ G  K K   E 
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           +  F+ M E     PD +TL  +I  +   GN++   + + +     ++ D+ T N L  
Sbjct: 465 DKLFNEMTERA-LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            +G+ G  D  + +   M  +   PT ++Y+I++      GH+ +    + +M  + +KP
Sbjct: 524 GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
             +   S++  Y ++G     +S L ++ +   + D   +N +I  + +  ++ K   L 
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLV 643

Query: 420 LTMKERH--CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
             M+E     VPD  T+ +++  +      + A+ +  KMI    N  +    C
Sbjct: 644 KKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTC 697



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 154/332 (46%), Gaps = 2/332 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           + ++  +A   F ++ S G   S+D   AL+ +  + G ++ A+    ++ S S    +V
Sbjct: 177 QARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI-SRSGVGINV 235

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YT +I++ +  K  + + +   L+++   G+    VTYNT+I  Y      EE     +A
Sbjct: 236 YTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M    G  P ++T N++I+     G  E+ ++ + E    G+  D  T   L     + G
Sbjct: 296 M-PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +   V   M+ R   P +V ++ ++  F ++G+++K   YF  +K  G+ P+++ Y 
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+  Y + G+I    ++  ++      +D   +N I+    +   + +  +LF  M ER
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              PD+ T   +I  +  LG  + A  L  KM
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 37/351 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM- 175
           F+ +M +  +    ++A + F  +   GL P   +YT L+  Y + G++  A +  N+M 
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437

Query: 176 --KSVSD-----------CK--------------------PDVYTYSILIKSCTKFHRFD 202
                 D           CK                    PD YT +ILI    K     
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQ 497

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              ++  +M    I    VTYNT++DG+GK    +  +  ++ MV S    P   + + +
Sbjct: 498 NAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISYSIL 556

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++A  + G++ +  + ++E     +K  +   N + K Y R+G      S ++ M    F
Sbjct: 557 VNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKV 380
            P  ++YN +I  F +  ++ K     KKM+    G+ P+  TY S++  + +   + + 
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           + +LR++    V  D   + C+I+ +    ++ +   +   M +R   PD+
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 9/244 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K    Q A+++F  +++++  +    T+  L+   GK    + A  ++  M+S  
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEKR-IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+   Y+ LV+A    G L EAF   ++M S  + KP V   + +IK   +       
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMIS-KNIKPTVMICNSMIKGYCRSGNASDG 604

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV----ESGGCHPDIFTLN 260
           E  L +M   G     ++YNT+I G+ +    E M  +F  +     E GG  PD+FT N
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVRE---ENMSKAFGLVKKMEEEQGGLVPDVFTYN 661

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S++  +     +++ E    +    GV  D  T   +   +       +   + D M +R
Sbjct: 662 SILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721

Query: 321 FFFP 324
            F P
Sbjct: 722 GFSP 725



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 3/136 (2%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDC 181
           G C+           E M+S+G  P    Y  L+  + +   + +AF  +  M+      
Sbjct: 594 GYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGL 653

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            PDV+TY+ ++    + ++    E +L +M   G+     TY  +I+G+       E   
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFR 713

Query: 242 SFSAMVESGGCHPDIF 257
               M++ G    D F
Sbjct: 714 IHDEMLQRGFSPDDKF 729


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 174/374 (46%), Gaps = 17/374 (4%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F      Q  +    TFT LM  L +  +  +A  L + M+ DGL+P+   Y  +V
Sbjct: 69  ALDLF-----HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 123

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G    A + +  M+ +S  KPDV  YS +I    K  R    + +  EM   GI
Sbjct: 124 DGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
               VTY+ +I+G+  + K+ E +     M+      PD+ T + +I+A    G++   +
Sbjct: 184 FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK-ISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAG-------MYDKM-RSVMDFMQKRFFF---PT 325
               E    GV  ++ T N L      +G       M+  M +S+MD      F    P 
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPD 302

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYNI+I      G   + EE +++M HRG+ P+++TY S+++   K   + +   +  
Sbjct: 303 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFD 362

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + +     +   FN +I+ Y +AG V+   ELF  M  R  V + IT+ T+I+ +  +G
Sbjct: 363 SMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVG 422

Query: 446 MTEAAQNLENKMIA 459
               + ++  +MI+
Sbjct: 423 NINGSLDIFQEMIS 436



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 130/275 (47%), Gaps = 11/275 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            A  LF  M   G+ P +  Y+ +++ +  SG   EA   + +M  V    PDV T+S L
Sbjct: 170 DAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEML-VRKISPDVVTFSGL 228

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-- 249
           I +  K    +  + +L EM   G+  + VT NT++DG   + K ++    F AM +S  
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288

Query: 250 --------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
                    G  PD+ T N +IS   N G   + E+ Y E    G+  D  T + +    
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            +    D+   + D M  + F P +VT+N +I  + KAG ++   E F +M  RG+  N+
Sbjct: 349 CKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANA 408

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 409 ITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 13/250 (5%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L + ML   + P V  ++ L++A  + G L+ A   + +M S   C P+V T + L
Sbjct: 205 EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC-PNVVTCNTL 263

Query: 192 IKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           +   C      D +E           I A  ++ G+E    TYN +I G     KF E E
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             +  M   G   PD  T +SMI+       +++  + ++         +I T N L   
Sbjct: 324 ELYEEMPHRG-IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y +AGM D    +   M +R      +TY  +I  F K G+I    + F++M   G+ P+
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 361 SITYCSLVSA 370
           +IT  ++++ 
Sbjct: 443 TITIRNMLTG 452



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 19/290 (6%)

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           N++K       D+Y+++ILIK      +         +++ LG   + VT+NT++ G   
Sbjct: 3   NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             +  E    F  M     C P++ T  ++++     G + +     +     G++ +  
Sbjct: 63  EDRVSEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 117

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
           T   +    G   M D + S ++ ++K        P VV Y+ +I+   K G     +  
Sbjct: 118 TYGTIVD--GMCKMGDTV-SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNL 174

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F +M+ +G+ P+ +TY  +++ +  +G   +   +L+++    +  D   F+ +I+A  +
Sbjct: 175 FIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK 234

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY-------NALGMTEAAQ 451
            GD+    +L   M      P+ +T  T++          +AL M +A Q
Sbjct: 235 EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI++ N +I  + +   +      + +   +G    + T N L        + D++   +
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLC---VEDRVSEAL 70

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D   +    P VVT+  ++    + G + +      +M   G++PN ITY ++V    K 
Sbjct: 71  DLFHQ-MCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 375 GLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           G  +   ++LR++E  S +  D   ++ II    + G       LF+ M+++   PD +T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMK 461
           ++ MI  + + G    AQ L  +M+  K
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRK 217


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 172/373 (46%), Gaps = 18/373 (4%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFT-------KLMVMLGKCKQPEQASLLFEVMLSDG 144
           K  +LAL  F      +W  A    F+        L+ +L +CK+  +A  LF   L   
Sbjct: 54  KDAKLALAFF------RWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLAS 107

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P V  Y  ++S +  +G L  A   + +MKS +   PD +T++ +I +       D  
Sbjct: 108 CEPDVCSYNIVISGFCNAGDLHAALELLEEMKS-AGFAPDAFTHTPIITAMANAGDLD-- 164

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
              +  +  +G + + VTY  +I  + +AKK EE       M E G C P++ T N ++ 
Sbjct: 165 -GAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERG-CPPNLVTYNVLVD 222

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A      +   +    +    G   ++ T N L   + + G  D  R ++  M  +   P
Sbjct: 223 ALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRP 282

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            VVTY+ +I+   K+    + +E  ++MK RG+ P++ TY +L+    KA  I + + +L
Sbjct: 283 NVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQML 342

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           R++  S    D   ++ II A+ ++G + +  +    M+++   PD +T+ T+I     L
Sbjct: 343 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 402

Query: 445 GMTEAAQNLENKM 457
           G    AQ +  +M
Sbjct: 403 GKIAEAQVILEQM 415



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 152/323 (47%), Gaps = 6/323 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L E M S G  P    +T +++A   +G LD A   +  M     C P+V TY+ LI + 
Sbjct: 134 LLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDPNVVTYTALIAAF 189

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  + +   K+L EM   G   + VTYN ++D   K       +     M+E GG  P+
Sbjct: 190 ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE-GGFAPN 248

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++  +   GN++   K        G++ ++ T + L     ++  + + + V++
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R   P   TY+ +I    KA  IE+ E+  ++M   G  P+ + Y S++ A+ K+G
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITF 434
            +++    L+++       D   +N +I    + G + +   +   M+E    +PD +T+
Sbjct: 369 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           +T+I       M   AQ L ++M
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRM 451



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 180/406 (44%), Gaps = 41/406 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + KK + A+K+   +R++        T+  L+  L K      A  + + M+  G  P+V
Sbjct: 191 RAKKLEEAMKLLEEMRERGC-PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNV 249

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             + +LV  + + G +D+A   +  M +    +P+V TYS LI    K  +F   +++L 
Sbjct: 250 MTFNSLVDGFCKRGNVDDARKLLGIMVA-KGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+   A TY+ +I G  KA K EE E     M  SG C PD+   +S+I A+  S
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG-CTPDVVVYSSIIHAFCKS 367

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG------------------------ 305
           G + + +K   E        D+ T N +     + G                        
Sbjct: 368 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVT 427

Query: 306 ------------MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
                       M  + + ++D M K    P VVTY  +I+   K G +E+ E   + MK
Sbjct: 428 YSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK 487

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PN +TY +L+S   KA  + + + ++ ++ N+    +   +N +++    +G ++
Sbjct: 488 RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIK 547

Query: 414 KMGELFLTMKE--RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +L   MK+    C PD  T+ T++ A  +  + + A+ L  +M
Sbjct: 548 EAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 309 KMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           K R   D  +        P V +YNIVI  F  AG +    E  ++MK  G  P++ T+ 
Sbjct: 92  KHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHT 151

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            +++A + AG    +D  +  + +     +   +  +I+A+ +A  +E+  +L   M+ER
Sbjct: 152 PIITAMANAG---DLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 208

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            C P+ +T+  ++ A   L M  AAQ++  KMI
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 241


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +  
Sbjct: 112 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLH 171

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGK 232
                 C PDV++YSIL+KS     +    + +L  M+  G  CS   V Y+T+IDG+ K
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFK 231

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F  MV+ G   PD  T +S++ A   +  ++K E +  +    GV  +  
Sbjct: 232 EGDVNKACDLFKEMVQRG-IPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M++    P VVT ++++ +  K G I++  + F  M
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 350

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  PN  +Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G +
Sbjct: 351 AMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGML 410

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K   +F  M++    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 411 DKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K +  ++A      M++ G+ P+   Y  L+  Y  +G   EA     +M
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV T S+L+ S  K+ +      +   M+  G   +  +Y  +++GY     
Sbjct: 316 RRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGC 374

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  PDI+T N +I AY N G ++K    +NE    GVK D+ T  
Sbjct: 375 LVDMTDLFDLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYR 433

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + 
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 493

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM  + + + S+++   K G +M   +I     N  +      ++ ++  Y   G +EK 
Sbjct: 494 GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+++ + T++  Y  +G  +   +L  +M+
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 151/318 (47%), Gaps = 3/318 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W+ A+++F  +R+         T + LM  L K  + ++A  +F+ M   G  P+V  Y
Sbjct: 304 QWKEAVRVFKEMRRHSIL-PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSY 362

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           T +++ Y   G L +  + + D+       PD+YT+++LIK+       D    I  EM 
Sbjct: 363 TIMLNGYATKGCLVD-MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G++   VTY T+I    +  K ++    F+ M++ G   PD +  + +I  +   G++
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG-VAPDKYAYHCLIQGFCTHGSL 480

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K ++  +E    G+  DI   + +  +  + G     +++ D        PT V Y+++
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ +   G +EK    F  M   G++PN + Y +LV+ Y K G I +  S+ R++    +
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 600

Query: 393 ILDTPFFNCIISAYGQAG 410
              T  +N II    +AG
Sbjct: 601 KPSTILYNIIIDGLFEAG 618



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P    Y+++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPNNWTYNNL 295

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +P++F+   M++ Y   G +  M   ++     G+  DI T N+L K+Y   GM DK  
Sbjct: 356 -NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 414

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVS 562



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 156/350 (44%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y  LI+           +++++E+   G+    V +++II+   K  +
Sbjct: 456 ID-QGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HP     + ++  Y   G +EK  + ++     G++ +     
Sbjct: 515 VMDAQNIFDLTVNVG-LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M ++   P+ + YNI+I+   +AG     +  F +M   
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  TY  ++    K     +   + +++   +V ++    N +I+   Q   VE+ 
Sbjct: 634 GIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEA 693

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 694 KDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 739



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N ++ G+ +AK+ +E    
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDI 168

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 196

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV Y+ VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 197 KSGQADDLLRMMA-EGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 353



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +   A  +F++ ++ GL P+  VY+ L+  Y   G +++A    + M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+   Y  L+    K  R D    +  EM   GI+ S + YN IIDG  +A + 
Sbjct: 562 S-AGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRT 620

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    +  T N ++     +   ++    + E   M VK +I TLN 
Sbjct: 621 VPAKVKFHEMTESG-IAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P VVTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +P+S     +V    K   I++  + L +++  +  L+
Sbjct: 740 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 778


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 174/362 (48%), Gaps = 4/362 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+++F  ++     Q   + +T L+ +  K  + E+A  LFE M   G  P+V  YT L+
Sbjct: 252 AIRLFDEMKDN-CMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
              G++G ++EA+    +M +     PDV   + L+    K  R + +  +  EM     
Sbjct: 311 KGLGKAGRVEEAYDLYKNMLT-DGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRC 369

Query: 217 ECSAVTYNTIIDGYGKAKK-FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
             + V+YNT+I    ++K    E+ S F  M ++ G  P  FT + +I  Y  +  +EK 
Sbjct: 370 TPTVVSYNTVIKALFESKAPVSEVSSWFDKM-KADGVSPSEFTYSILIDGYCKTNRVEKA 428

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                E +  G          L  + G+A  Y+    +   +++ F   +   Y ++I+ 
Sbjct: 429 LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKH 488

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           FGK G + +  + F +MK++G  P+   Y +L+S   KAG++ + +S+LR++E +    D
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTAD 548

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
               N I++ + + G   +  E+F TMK     PD +T+ T++  +   GM E A  L  
Sbjct: 549 INSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMR 608

Query: 456 KM 457
           +M
Sbjct: 609 EM 610



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 155/343 (45%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
             ++L+  LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +  DC PD  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGK 283

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M +  GC P ++T   +I   G +G +E+    Y      G+  D+  LN
Sbjct: 284 VEKALDLFEEM-KRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLN 342

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 354
            L    G+ G  +++ +V + M      PTVV+YN VI+  F     + ++  +F KMK 
Sbjct: 343 NLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKA 402

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  L+  Y K   + K   +L +++          +  +I+A G+A   E 
Sbjct: 403 DGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ELF  +KE      +  +A MI+ +   G    A +L N+M
Sbjct: 463 ANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 164/360 (45%), Gaps = 49/360 (13%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  K + AL +F     ++  +A C     T+T+L+  LGK  + E+A  L++ ML+DGL
Sbjct: 280 KVGKVEKALDLF-----EEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGL 334

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-------------------- 185
            P V     L++  G+ G L+E  +  N+M +   C P V                    
Sbjct: 335 TPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWR-CTPTVVSYNTVIKALFESKAPVSEV 393

Query: 186 ----------------YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                           +TYSILI    K +R +    +L EM   G       Y ++I+ 
Sbjct: 394 SSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453

Query: 230 YGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            GKAK++E     F  + E+ G     ++ +  MI  +G  G + +    +NE    G  
Sbjct: 454 LGKAKRYEAANELFKELKENFGNVSSRVYAV--MIKHFGKCGKLSEAVDLFNEMKNQGSG 511

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+   N L     +AGM ++  S++  M++      + ++NI++  F + G   +  E 
Sbjct: 512 PDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEM 571

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F+ MKH G+KP+ +TY +L+  ++ AG+  +   ++R++++     D   ++ I+ A G 
Sbjct: 572 FETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGN 631



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 7/261 (2%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           D  TY  LI+   +   +  + + + E+   +Y+ +    V  + ++   G+AK   +  
Sbjct: 125 DCSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSV--GPVVLSELVKALGRAKMVSKAL 182

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 299
           S F    +   C P   T NS+I      G  EK+ + Y E  N      D  T + L  
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           SY + G  D    + D M+     PT   Y  ++  + K G +EK  + F++MK  G  P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
              TY  L+    KAG + +   + + +    +  D  F N +++  G+ G +E++  +F
Sbjct: 302 TVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVF 361

Query: 420 LTMKERHCVPDNITFATMIQA 440
             M    C P  +++ T+I+A
Sbjct: 362 NEMGTWRCTPTVVSYNTVIKA 382



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 6/228 (2%)

Query: 117 FTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT  +++ G CK  + E+A LL E M   G  P    Y +L++A G++   + A     +
Sbjct: 410 FTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKE 469

Query: 175 MK-SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +K +  +    VY  +++IK   K  +      +  EM   G       YN ++ G  KA
Sbjct: 470 LKENFGNVSSRVY--AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKA 527

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               E  S    M E  GC  DI + N +++ +  +G   +  + +      G+K D  T
Sbjct: 528 GMVNEANSLLRKM-EENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVT 586

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            N L   +  AGM+++   +M  M+ + F    +TY+ +++  G   H
Sbjct: 587 YNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDH 634



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            L+ L K+ GRA M  K  SV    + R   PT  TYN VI    + G  EK+ E + +M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query: 353 KHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQ 408
            + G   P++ITY +L+S+Y K G   + DS +R   +++++ +      +  ++  Y +
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G VEK  +LF  MK   C P   T+  +I+     G  E A +L   M+
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML 330



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 3/242 (1%)

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           +CS  TY  +I    +A+ + EM  +   +V +         L+ ++ A G +  + K  
Sbjct: 125 DCS--TYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKAL 182

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIET 335
             + +      K    T N +     + G ++K+  V   M  +   FP  +TY+ +I +
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           + K G  +     F +MK   M+P    Y +L+  Y K G + K   +  +++ +     
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPT 302

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +  +I   G+AG VE+  +L+  M      PD +    ++     +G  E   N+ N
Sbjct: 303 VYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFN 362

Query: 456 KM 457
           +M
Sbjct: 363 EM 364


>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           alba]
          Length = 419

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 62  KLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTS 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 119/293 (40%), Gaps = 36/293 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 131 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 187

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 188 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 247 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 306

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 366

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + +
Sbjct: 367 MIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 419


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 173/348 (49%), Gaps = 6/348 (1%)

Query: 114 CQTF---TKLM-VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           C+T    TKLM +++GK K P +A+L+F+ ++ DG +P++  YT LV+A  +    +  F
Sbjct: 55  CRTVHSRTKLMNILIGKGK-PHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIF 113

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             I+ ++  +  KPD   Y+ +I + ++        KI  +M   G + +  T+NT+I G
Sbjct: 114 LLISKVEE-NGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKG 172

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           YG A K EE       M   G   P+  T N ++ A+ +  NIE+     ++    G++ 
Sbjct: 173 YGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQP 232

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+ T NIL ++Y + G   +   ++  MQ     P   T  I++  + K G++ +   + 
Sbjct: 233 DVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFV 292

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +MK  G+ PN + + SL+  +        VD  L  +E   V  D   F+ I++A+  A
Sbjct: 293 YRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSA 352

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G ++K  E+F  M +    PD   F+ + + Y   G TE A+++   M
Sbjct: 353 GLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSM 400



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 165/344 (47%), Gaps = 5/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K K  E   LL   +  +G+KP   +Y A+++A+ +SG + EA      M
Sbjct: 95  TYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKM 154

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           K  + CKP   T++ LIK      + +   K+L  MS  G ++ +  TYN ++  +   K
Sbjct: 155 KD-TGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKK 213

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             EE  +    MV SG   PD+ T N +  AY   G   + E    E     V  + +T 
Sbjct: 214 NIEEAWNVLHKMVASG-IQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTC 272

Query: 295 NILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            I+   Y + G M + +R V   M++    P +V +N +I+ F      + ++E    M+
Sbjct: 273 GIIVNGYCKEGNMIEALRFVYR-MKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLME 331

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ IT+ ++++A+S AGL+ K   I   +  + +  D   F+ +   Y +AG+ E
Sbjct: 332 EYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETE 391

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               +  +M +    P+ +   T+I  + + G  E A+ +  KM
Sbjct: 392 NAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKM 435



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 168/362 (46%), Gaps = 12/362 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSVDV 151
           A+KIF     Q+     C+    TF  L+   G   +PE+   +  +M  DG +KP+   
Sbjct: 147 AMKIF-----QKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRT 201

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  LV A+     ++EA++ ++ M + S  +PDV TY+IL ++  +       E ++ EM
Sbjct: 202 YNILVRAWCSKKNIEEAWNVLHKMVA-SGIQPDVVTYNILARAYAQKGETLRAEDLILEM 260

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
            Y  +  +  T   I++GY K     E    F   ++  G HP++   NS+I  + +  +
Sbjct: 261 QYEKVAPNERTCGIIVNGYCKEGNMIEA-LRFVYRMKELGVHPNLVIFNSLIKGFLDITD 319

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            + +++        GVK D+ T + +  ++  AG+ DK + + + M K    P +  ++I
Sbjct: 320 TDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSI 379

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           + + + +AG  E  E     M   G++PN +   +++S +  AG +     +  ++    
Sbjct: 380 LAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIG 439

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +  +   F  +I  Y +A    K  EL   M+E+   P+  T   +  A+  +G+   A+
Sbjct: 440 ISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAWRNIGLLCEAK 499

Query: 452 NL 453
            +
Sbjct: 500 RI 501


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 5/351 (1%)

Query: 109 WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           W  A        +  LG+ K+     LL E+    G  P V  Y+ +V+ Y + G LD+ 
Sbjct: 244 WNVASYNIVIHFVCQLGRIKEAHHLLLLMEL---KGYTPDVISYSTVVNGYCRFGELDKV 300

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
           +  I  MK     KP+ Y Y  +I    +  +    E+  +EM   GI    V Y T+ID
Sbjct: 301 WKLIEVMKR-KGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G+ K          F  M  S    PD+ T  ++IS +   G++ +  K ++E    G++
Sbjct: 360 GFCKRGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T   L   Y +AG       V + M +    P VVTY  +I+   K G ++   E 
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M   G++PN  TY S+V+   K+G I +   ++ + E + +  DT  +  ++ AY +
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +G+++K  E+   M  +   P  +TF  ++  +   GM E  + L N M+A
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 589



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 164/358 (45%), Gaps = 42/358 (11%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+  + K  + E+A   F  M+  G+ P   VYT L+  + + G +  A     +M S  
Sbjct: 325 LLCRICKLAEAEEA---FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-R 380

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           D  PDV TY+ +I    +    D++E  K+  EM   G+E  +VT+  +I+GY KA   +
Sbjct: 381 DITPDVLTYTAIISGFCQIG--DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 438

Query: 238 EMESSFSAMVESG----------------------------------GCHPDIFTLNSMI 263
           +     + M+++G                                  G  P+IFT NS++
Sbjct: 439 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 498

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +    SGNIE+  K   EF   G+ AD  T   L  +Y ++G  DK + ++  M  +   
Sbjct: 499 NGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+VT+N+++  F   G +E  E+    M  +G+ PN+ T+ SLV  Y     +    +I
Sbjct: 559 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAI 618

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + + +  V  D   +  ++  + +A ++++   LF  MK +       T++ +I+ +
Sbjct: 619 YKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 150/319 (47%), Gaps = 2/319 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++    +     +A  LF  M   GL+P    +T L++ Y ++G + +AF   N M
Sbjct: 388 TYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM 447

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C P+V TY+ LI    K    D   ++L EM  +G++ +  TYN+I++G  K+  
Sbjct: 448 IQ-AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE         E+ G + D  T  +++ AY  SG ++K ++   E    G++  I T N
Sbjct: 507 IEE-AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L   +   GM +    ++++M  +   P   T+N +++ +    +++     +K M  R
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+  TY +LV  + KA  + +   + ++++     +    ++ +I  + +     + 
Sbjct: 626 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685

Query: 416 GELFLTMKERHCVPDNITF 434
            E+F  M+      D   F
Sbjct: 686 REVFDQMRREGLAADKEIF 704



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 2/285 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT+L+    K    + A  +   M+  G  P+V  YT L+    + G LD A   +++M
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   +P+++TY+ ++    K    +   K++ E    G+    VTY T++D Y K+ +
Sbjct: 483 WKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 541

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++ +     M+   G  P I T N +++ +   G +E  EK  N     G+  +  T N
Sbjct: 542 MDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 600

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K Y          ++   M  R   P   TY  +++   KA ++++    F++MK +
Sbjct: 601 SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 660

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           G   +  TY  L+  + K    ++   +  Q+    +  D   F+
Sbjct: 661 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 705



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 87/174 (50%), Gaps = 1/174 (0%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + EF  +GV  ++ + NI+     + G   +   ++  M+ + + P V++Y+ V+  + +
Sbjct: 234 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 293

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G ++K+ +  + MK +G+KPNS  Y S++    +   + + +    ++    ++ DT  
Sbjct: 294 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVV 353

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
           +  +I  + + GD+    + F  M  R   PD +T+  +I  +  +G M EA +
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 165/341 (48%), Gaps = 19/341 (5%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSG-----------------LLDEAFSTINDMKSV 178
           +F+ M +  + P V  YT ++SA+ + G                 LLDEA      M   
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVD- 269

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               PD+YTY ILI       R    + +L EM  +G++   +TYN +IDG+ +    E+
Sbjct: 270 KGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQ 329

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                  MV + G   ++   N++++    +G +EK  +   E    GV+ D QT ++L 
Sbjct: 330 AFRIKDEMV-ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLI 388

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           + + R     +   ++D M+KR   PTV+TY+++I    + G+++      ++M   G+K
Sbjct: 389 EGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK 448

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN++ Y +L++A++K G + +   IL ++    ++ D   +N +I  + +A  +E+    
Sbjct: 449 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + M ER   P+  T+   I  Y+  G  E A    N+M++
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 549



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 171/359 (47%), Gaps = 7/359 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASL--LFEVMLS 142
           L+   K  K + AL+I   +  ++  +   QT++  +++ G C+    A    L + M  
Sbjct: 353 LNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYS--LLIEGHCRGQNMARAFELLDEMKK 409

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             L P+V  Y+ +++   + G L    + + +M  ++  KP+   Y+ L+ +  K  R +
Sbjct: 410 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREM-VMNGLKPNAVVYTTLMTAHAKEGRVE 468

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               IL  M   GI      YN++I G+ KAK+ EE  +    M+E     P+  T  + 
Sbjct: 469 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAF 527

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  Y  +G +E  ++++NE    GV  ++     L + + + G   +  SV  F+  R  
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 587

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
              V TY+++I    + G + +    F +++ +G+ PN+ TY SL+S   K G + K   
Sbjct: 588 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 647

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +L ++    +  D   +N +I    +AG++E+   LF  ++ R   P+ +T+A M+  Y
Sbjct: 648 LLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 706



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 7/348 (2%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+    +A  +F  +LS  +   V  Y+ L+    ++G + EAF   ++++      
Sbjct: 565 GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE-KGLL 623

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+ +TY+ LI    K    D   ++L EM   GI    VTYN +IDG  KA + E  ++ 
Sbjct: 624 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 683

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F   +E  G  P+  T  +M+  Y  S N     +   E  L GV  D    N++     
Sbjct: 684 FDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCC 742

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +   ++K   +   M ++ F  TV ++N +IE + K+G +++     ++M  +   PN +
Sbjct: 743 KEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 801

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL+    KAG++ +   +  +++  +V+     +  ++  Y   G++ ++  LF  M
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKENSGKKL 468
             +   PD +T+  MI AY   G    A  L+++++   M   SG +L
Sbjct: 862 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRL 909



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 169/378 (44%), Gaps = 38/378 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L +C   +  + +   M+ +GLKP+  VYT L++A+ + G ++E+   +  M
Sbjct: 418 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 477

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PDV+ Y+ LI    K  R +     L EM    +  +A TY   IDGY KA +
Sbjct: 478 RE-QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGE 536

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E  +  F+ M+ S G  P++    ++I  +   GN+ +    +       V  D+QT +
Sbjct: 537 MEIADRYFNEML-SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYS 595

Query: 296 ILTKSYGR-----------------------------------AGMYDKMRSVMDFMQKR 320
           +L     R                                    G  DK   +++ M  +
Sbjct: 596 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 655

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +VTYNI+I+   KAG IE+ +  F  ++ RG+ PN +TY ++V  Y K+      
Sbjct: 656 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 715

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L ++    V  D   +N I++   +    EK  +LF  M E+      ++F T+I+ 
Sbjct: 716 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEG 774

Query: 441 YNALGMTEAAQNLENKMI 458
           Y   G  + A +L  +MI
Sbjct: 775 YCKSGKLQEANHLLEEMI 792



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 157/325 (48%), Gaps = 7/325 (2%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K+  +A L+   M+  GLKP    Y AL+  + + G +++AF   ++M +    + ++  
Sbjct: 290 KRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG-IEANLII 348

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++ L+    K  + +   +I+ EM   G+E  + TY+ +I+G+ +    + M  +F  + 
Sbjct: 349 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG---QNMARAFELLD 405

Query: 248 E--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           E       P + T + +I+     GN++       E  + G+K +      L  ++ + G
Sbjct: 406 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 465

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             ++ R +++ M+++   P V  YN +I  F KA  +E+   Y  +M  R ++PN+ TY 
Sbjct: 466 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYG 525

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           + +  YSKAG +   D    ++ +  V+ +   +  +I  + + G+V +   +F  +  R
Sbjct: 526 AFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR 585

Query: 426 HCVPDNITFATMIQAYNALG-MTEA 449
             + D  T++ +I   +  G M EA
Sbjct: 586 RVLQDVQTYSVLIHGLSRNGKMHEA 610



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 9/280 (3%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T+  ++    K K P  A  L E ML  G+ P   +Y  +++   +    ++A     
Sbjct: 696 CVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQ 755

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M  +        +++ LI+   K  +      +L EM       + VTY ++ID   KA
Sbjct: 756 EM--LEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKA 813

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               E +  +  M E     P   T  S++  Y N GN+ ++   + E    G++ D  T
Sbjct: 814 GMMGEAKRLWLEMQER-NVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT 872

Query: 294 LNILTKSYGRAGMYDKMRSVMDFM------QKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             ++  +Y R G   +   + D +       K  F   + T +++   F  AG++++  E
Sbjct: 873 YYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAE 932

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
             + M   G   N+ +   LV            D++L+Q+
Sbjct: 933 VLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 972



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 34/183 (18%), Positives = 77/183 (42%), Gaps = 17/183 (9%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            ++L  SY + G   +  +V    +   F P++++ N ++    K   +E   + F  M 
Sbjct: 157 FDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC 216

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSIL-----------------RQVENSDVILDT 396
              + P+  TY +++SA+ K G +     +L                 R + +  ++ D 
Sbjct: 217 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDL 276

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             ++ +I+ +       +   + L M +    P+ IT+  +I  +   G  E A  ++++
Sbjct: 277 YTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDE 336

Query: 457 MIA 459
           M+A
Sbjct: 337 MVA 339


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 172/368 (46%), Gaps = 10/368 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  +A K+F ++     Y    + +T ++    +  +  +A  +FE M   GL PS+
Sbjct: 199 RESQHTVASKLFDVIPLDD-YVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSL 257

Query: 150 DVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  ++  YG+ G   D+    +++M+S      D +T S ++ +C +    D   +  
Sbjct: 258 VTYNVMLDVYGKMGRSWDKILELLDEMRS-RGLDFDEFTCSTVLSACGREGLIDEAREFF 316

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           + +   G +   VTYN ++  +GKA  F E  S  S M E   C PD  T N +++AY  
Sbjct: 317 SGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEM-EENNCPPDAVTYNEVVAAYVR 375

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  E+     +     G+  +  T   +  +YGR G  DK   + D M +    P V T
Sbjct: 376 AGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVAT 435

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN V+   GK    E+M +    MK  G  PN IT+ ++++   K G+   V+ + R+++
Sbjct: 436 YNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMK 495

Query: 389 NSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           N     D   FN +ISAYG+ G   D  KM E  +      C+    T+  ++ A    G
Sbjct: 496 NCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCIN---TYNALLNALARRG 552

Query: 446 MTEAAQNL 453
             +AA+++
Sbjct: 553 DWKAAESV 560



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 202/450 (44%), Gaps = 26/450 (5%)

Query: 30  AIKRSPGPIQELGIQKEAEKDLSK-------------ILRT--EFAIKNIEKKVSSKKYK 74
           A  R P    E  + KE +KD+S              IL +  E  + ++     S KY+
Sbjct: 86  APHRKPNSFLEFEVDKEEDKDVSDSGFLEYLSRKGKLILGSIIEQPLHSLASFFDSSKYE 145

Query: 75  NLWPK--PVLEALDEAIKQKKWQLALKIF--GLLRQQQWYQARCQTFTKLMV-MLGKCKQ 129
            L      +L+ALD +     W+ AL +F   +L      +   +   +LMV +LG+  Q
Sbjct: 146 LLQVDLISLLKALDYS---GNWEKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRESQ 202

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
              AS LF+V+  D     V  YT ++ AY ++G    A      M   S   P + TY+
Sbjct: 203 HTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNE-SGLSPSLVTYN 261

Query: 190 ILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +++    K  R +D I ++L EM   G++    T +T++   G+    +E    FS + +
Sbjct: 262 VMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGL-K 320

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S G  P   T N+++  +G +G   +     +E        D  T N +  +Y RAG ++
Sbjct: 321 SEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHE 380

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           +   V+D M  +   P  VTY  +I  +G+ G I+K  E F +M   G  PN  TY +++
Sbjct: 381 EGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVL 440

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               K  L  ++  IL  ++ +    +   +N +++  G+ G  + + ++F  MK     
Sbjct: 441 GMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFE 500

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMI 458
           PD  TF T+I AY   G    A  +  +MI
Sbjct: 501 PDRDTFNTLISAYGRCGSNNDAAKMHEEMI 530



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 176/400 (44%), Gaps = 44/400 (11%)

Query: 92  KKWQLALKIFGLLRQQ--QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W   L++   +R +   + +  C T   ++   G+    ++A   F  + S+G KP  
Sbjct: 272 RSWDKILELLDEMRSRGLDFDEFTCST---VLSACGREGLIDEAREFFSGLKSEGYKPGT 328

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK--FHRFDLIEKI 207
             Y AL+  +G++G+  EA S +++M+  ++C PD  TY+ ++ +  +  FH    +  +
Sbjct: 329 VTYNALLHVFGKAGIFSEALSVLSEMEE-NNCPPDAVTYNEVVAAYVRAGFHEEGAV--V 385

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------------- 250
           +  M+  GI  +AVTY TII+ YG+    ++    F  M+E G                 
Sbjct: 386 IDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGK 445

Query: 251 -----------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                            GC P+  T N+M++  G  G  + + + + E    G + D  T
Sbjct: 446 KSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDT 505

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  +YGR G  +    + + M K  F P + TYN ++    + G  +  E     M+
Sbjct: 506 FNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMR 565

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           ++G +P+  +Y  +V +Y+K G +  ++ I + + + D+         ++ A  +   + 
Sbjct: 566 NKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLT 625

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            M   F  +++    PD +   +M+  +    M + A  +
Sbjct: 626 GMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEM 665



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 176/380 (46%), Gaps = 37/380 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +++    +    E+ +++ + M S G+ P+   YT +++AYG+ G +D+A    + M
Sbjct: 365 TYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQM 424

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +  C P+V TY+ ++    K    + + KIL  M   G   + +T+NT++   GK   
Sbjct: 425 MELG-CVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGM 483

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +   F  M ++ G  PD  T N++ISAYG  G+     K + E    G    I T N
Sbjct: 484 HKYVNQVFREM-KNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYN 542

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------IEK----- 344
            L  +  R G +    SV+  M+ + F P+  +Y++++ ++ K G+      IEK     
Sbjct: 543 ALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDG 602

Query: 345 ------------------------MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                   ME  F+ ++  G KP+ +   S++S ++K  +  + 
Sbjct: 603 DIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRA 662

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +LR + ++ +  D    N ++  Y + GD  K  E+   ++     PD +++ T+I+ 
Sbjct: 663 HEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKG 722

Query: 441 YNALGMTEAAQNLENKMIAM 460
           +   G+ +    + ++M ++
Sbjct: 723 FCRKGLMQEGIRILSEMTSI 742



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 149/329 (45%), Gaps = 8/329 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ M GK    +  + +F  M + G +P  D +  L+SAYG+ G  ++A     +M
Sbjct: 470 TWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEM 529

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GK 232
                  P + TY+ L+ +  +   +   E ++ +M   G   S  +Y+ ++  Y   G 
Sbjct: 530 IKAG-FSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGN 588

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            K  E +E S    +  G   P    L +++ A     ++  ME+ +      G K D+ 
Sbjct: 589 VKGIEMIEKS----IYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLV 644

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N +   + +  MYD+   ++  +      P +VT+N +++ + + G   K EE  + +
Sbjct: 645 LCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRML 704

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G KP+ ++Y +++  + + GL+ +   IL ++ +  V      +N  IS Y   G  
Sbjct: 705 QTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMF 764

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++ ++   M   +C P+ +T+  +   Y
Sbjct: 765 TEINDVISYMIVHNCRPNELTYKIVADGY 793



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSV 313
           D+    +++ AY  +G   +  + +   N  G+   + T N++   YG+ G  +DK+  +
Sbjct: 221 DVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILEL 280

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +D M+ R       T + V+   G+ G I++  E+F  +K  G KP ++TY +L+  + K
Sbjct: 281 LDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGK 340

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           AG+  +  S+L ++E ++   D   +N +++AY +AG  E+   +   M  +  +P+ +T
Sbjct: 341 AGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVT 400

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAM 460
           + T+I AY  +G  + A  + ++M+ +
Sbjct: 401 YTTIINAYGRVGDIDKALEMFDQMMEL 427



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 35/294 (11%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF  L+   G+C     A+ + E M+  G  P ++ Y AL++A  + G    A S I D
Sbjct: 504 DTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILD 563

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++    +P   +YS+++ S  K      IE I   +    I  S +   T++    K +
Sbjct: 564 MRN-KGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCR 622

Query: 235 KFEEMESSFSAMVESG----------------------------------GCHPDIFTLN 260
               ME +F A+ + G                                  G  PD+ T N
Sbjct: 623 SLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHN 682

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S++  Y   G+  K E+        G K D+ + N + K + R G+  +   ++  M   
Sbjct: 683 SLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSI 742

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
              P + TYN  I  +   G   ++ +    M     +PN +TY  +   Y KA
Sbjct: 743 GVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKA 796


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 168/350 (48%), Gaps = 8/350 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV LGK +  E   +L + M   GL+P+V  +T  +   G++G +DEA+     
Sbjct: 228 KTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRR 287

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID---GYG 231
           M     C PD+ TY++LI +     + +  +++  +M   G +   V Y T++D    +G
Sbjct: 288 MDD-EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFG 346

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
               F+E    F + +E+ G  PD+ T   ++     + + ++    ++     G+  ++
Sbjct: 347 DLDTFKE----FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L     RAG  +    ++D M+     PT  TY   I+ FGK+G   K  E F+K
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEK 462

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK +G+ PN +   + + + ++ G + +  ++   +  + +  D+  +N ++  Y + G 
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           V++   L   M    C PD I   ++I +    G  + A  + ++M  MK
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 2/299 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M +DG  P V  +T LV    ++   DEAF+T + M+      P+++TY+ LI    +  
Sbjct: 358 MEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK-QGILPNLHTYNTLICGLLRAG 416

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +   K+L  M  +G++ +A TY T ID +GK+ +  +   +F  M ++ G  P+I   
Sbjct: 417 RIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKM-KAKGIVPNIVAC 475

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+ + +    G + + +  +N     G+  D  T N++ K Y + G  D+  +++  M +
Sbjct: 476 NASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR 535

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P V+  N +I++  KAG +++  + F +MK   + P  +TY +L+S   K G + K
Sbjct: 536 NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQK 595

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
              +   +       +T  FN ++  + +  +VE   ++F  M    C PD +T+ T+I
Sbjct: 596 AIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 176/396 (44%), Gaps = 12/396 (3%)

Query: 42   GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIF 101
            G   EAE D + I   E  +  I ++ S       +  P++  L    K K+   A +IF
Sbjct: 726  GTLVEAEMDKAIIFAEELVLNGICREDS-------FLIPLVRVL---CKHKRELYAYQIF 775

Query: 102  GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
                ++        ++  L+  L +    E+A  LF+ M + G  P    +  L++ +G+
Sbjct: 776  DKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGK 835

Query: 162  SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
            SG + E F    +M S   CKPD  TY+I+I S  K +  D       ++       +  
Sbjct: 836  SGKITELFELYKEMIS-RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 222  TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            TY  +IDG  K  + EE    F  M + G C P+    N +I+ YG  G+ E   + +  
Sbjct: 895  TYGPLIDGLAKVGRLEEAMRLFEEMSDYG-CKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 282  FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
                G++ D+++  IL      AG  D+     + ++     P  + YN +I   GK+  
Sbjct: 954  MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQR 1013

Query: 342  IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            +E+    + +M++RG+ P+  TY SL+     AG++ +   +  +++ + +  D   +N 
Sbjct: 1014 MEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNA 1073

Query: 402  IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +I  Y  + + E    ++  M    C P+  T+A +
Sbjct: 1074 LIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 37/342 (10%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+    QSG   EA      M S    KP + TYS L+ +  K    +++  +L EM
Sbjct: 195 YNGLIHLLIQSGFCGEALEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             LG+  +  T+   I   G+A K +E    F  M +  GC PD+ T   +I A  N+G 
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 272 IEKMEKW----------------------YNEFNLM-------------GVKADIQTLNI 296
           +E  ++                       +N+F  +             G   D+ T  I
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L     +A  +D+  +  D M+K+   P + TYN +I    +AG IE   +    M+  G
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           ++P + TY + +  + K+G   K      +++   ++ +    N  + +  + G + +  
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +F  ++E    PD++T+  M++ Y+ +G  + A NL ++MI
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 138/299 (46%), Gaps = 2/299 (0%)

Query: 144  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            G+ P++  Y  L+    +    ++A+    DMK+V  C PD +T+++L+    K  +   
Sbjct: 783  GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG-CAPDAFTFNMLLAVHGKSGKITE 841

Query: 204  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            + ++  EM     +  A+TYN +I    K+   ++    F  +V S    P   T   +I
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSD-FRPTPRTYGPLI 900

Query: 264  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                  G +E+  + + E +  G K +    NIL   YG+ G  +    +   M      
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR 960

Query: 324  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            P + +Y I+++    AG +++   YF ++K  G+ P+ I Y  +++   K+  + +  ++
Sbjct: 961  PDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALAL 1020

Query: 384  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++ N  ++ D   +N ++   G AG VE+   ++  ++     PD  T+  +I+ Y+
Sbjct: 1021 YNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYS 1079



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 73/364 (20%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y     TFT L+ +L K +  ++A   F+VM   G+ P++  Y  L+    ++G +++A 
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 170 STINDMKSVSDCKPDVYTYSILI----KSCTKFHRFDLIEKI------------------ 207
             ++ M+SV   +P  YTY   I    KS       +  EK+                  
Sbjct: 423 KLLDTMESVG-VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 208 LAEMSYL-------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           LAEM  L             G+   +VTYN ++  Y K  + +E  +  S M+ +G C P
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEP 540

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+  +NS+I +   +G ++  E W                           M+D+M+ + 
Sbjct: 541 DVIVVNSLIDSLYKAGRVD--EAWQ--------------------------MFDRMKDMK 572

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
                    PTVVTYN ++   GK G ++K  E F+ M  +   PN+I++ +L+  + K 
Sbjct: 573 -------LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKN 625

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
             +     +  ++   D   D   +N +I    +   V      F  +K +   PD++T 
Sbjct: 626 DEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTI 684

Query: 435 ATMI 438
            T++
Sbjct: 685 CTLL 688



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 183  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            P + +Y+ LI    + H  +    +  +M  +G    A T+N ++  +GK+ K  E+   
Sbjct: 786  PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 243  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
            +  M+ S  C PD  T N +IS+   S N++K   ++ +      +   +T   L     
Sbjct: 846  YKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLA 904

Query: 303  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            + G  ++   + + M      P    +NI+I  +GK G  E   + FK+M + G++P+  
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 363  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +Y  LV     AG + +      +++++ +  D   +N II+  G++  +E+   L+  M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 423  KERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            + R  VPD  T+ +++      GM E A+ +
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 1/276 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           + D+ TY  + K+ +       +  +L +M   G   +A +YN +I    ++    E   
Sbjct: 154 RRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALE 213

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            +  MV S G  P + T ++++ A G   + E +     E   +G++ ++ T  I  +  
Sbjct: 214 VYRRMV-SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           GRAG  D+   +   M      P +VTY ++I+    AG +E  +E F KMK  G KP+ 
Sbjct: 273 GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ 332

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           + Y +L+  ++  G +        Q+E    + D   F  ++    +A D ++    F  
Sbjct: 333 VIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDV 392

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M+++  +P+  T+ T+I      G  E A  L + M
Sbjct: 393 MRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTM 428



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 155/375 (41%), Gaps = 21/375 (5%)

Query: 100  IFGLLRQQQ-----WYQARCQ--------TFTKLMVMLGKCKQPEQA-SLLFEVMLSDGL 145
            I+GL+++ +     W+  + +        T   L+  L KC Q   A S+  + M     
Sbjct: 654  IYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRF 713

Query: 146  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT---YSILIKSCTKFHRFD 202
            + +   +  L+        +D+A     ++     C+ D +      +L K   + + + 
Sbjct: 714  RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQ 773

Query: 203  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            + +K   +   LGI  +  +YN +I    +    E+    F  M ++ GC PD FT N +
Sbjct: 774  IFDKFTKK---LGISPTLASYNCLIGELLEVHYTEKAWDLFKDM-KNVGCAPDAFTFNML 829

Query: 263  ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
            ++ +G SG I ++ + Y E      K D  T NI+  S  ++   DK       +    F
Sbjct: 830  LAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 323  FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
             PT  TY  +I+   K G +E+    F++M   G KPN   +  L++ Y K G       
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 383  ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            + +++ N  +  D   +  ++     AG V++    F  +K     PD I +  +I    
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 443  ALGMTEAAQNLENKM 457
                 E A  L N+M
Sbjct: 1010 KSQRMEEALALYNEM 1024



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N M+        +E M   +       ++ D+ T   + K+    G   +M +V++ M
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +K  F     +YN +I    ++G   +  E +++M   G+KP+  TY +L+ A  K    
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +L+++E+  +  +   F   I   G+AG +++  E+F  M +  C PD +T+  +
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 438 IQAYNALGMTEAAQNLENKMIAMKENSGK 466
           I A    G  E A+ L    + MK N  K
Sbjct: 304 IDALCNAGQLENAKEL---FVKMKANGHK 329



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 1/225 (0%)

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K E+M + F  M +      D+ T  ++  A    G + +M    N+    G   +  + 
Sbjct: 137 KVEDMAAVFEFM-QKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSY 195

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     ++G   +   V   M      P++ TY+ ++   GK    E +    K+M+ 
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMED 255

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G++PN  T+   +    +AG I +   I R++++     D   +  +I A   AG +E 
Sbjct: 256 LGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLEN 315

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             ELF+ MK     PD + + T++  +N  G  +  +   ++M A
Sbjct: 316 AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 172/361 (47%), Gaps = 2/361 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+++F  ++     Q   + +T L+ +  K  + E+A  LFE M   G  P+V  YT L+
Sbjct: 252 AIRLFDEMKDN-CMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
              G++G +DEA+    DM       PDV   + L+    K  R + +  + +EM     
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLR-DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + V+YNT+I    ++K      SS+   +++    P  FT + +I  Y  +  +EK  
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E +  G          L  + G+A  Y+    +   +++ F   +   Y ++I+ F
Sbjct: 430 LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHF 489

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           GK G + +  + F +MK++G  P+   Y +L+S   KAG+I + +S+LR++E +    D 
Sbjct: 490 GKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADI 549

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
              N I++ + + G   +  E+F T+K     PD +T+ T++  +   GM E A  +  +
Sbjct: 550 NSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE 609

Query: 457 M 457
           M
Sbjct: 610 M 610



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
             ++L+  LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +  DC PD  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGK 283

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M +  GC P ++T   +I   G +G +++   +Y +    G+  D+  LN
Sbjct: 284 VEKALDLFEEM-KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLN 342

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 354
            L    G+ G  +++ +V   M      PTVV+YN VI+  F    H+ ++  +F KMK 
Sbjct: 343 NLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA 402

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             + P+  TY  L+  Y K   + K   +L +++          +  +I+A G+A   E 
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ELF  +KE      +  +A MI+ +   G    A +L N+M
Sbjct: 463 ANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 165/366 (45%), Gaps = 50/366 (13%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  K + AL +F     ++  +A C     T+T+L+  LGK  + ++A   ++ ML DGL
Sbjct: 280 KVGKVEKALDLF-----EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGL 334

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-------------------- 185
            P V     L++  G+ G ++E  +  ++M  +  C P V                    
Sbjct: 335 TPDVVFLNNLMNILGKVGRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEV 393

Query: 186 ----------------YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                           +TYSILI    K +R +    +L EM   G       Y ++I+ 
Sbjct: 394 SSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453

Query: 230 YGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            GKAK++E     F  + E+ G     ++ +  MI  +G  G + +    +NE    G  
Sbjct: 454 LGKAKRYEAANELFKELKENFGNVSSRVYAV--MIKHFGKCGKLSEAVDLFNEMKNQGSG 511

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+   N L     +AGM ++  S++  M++      + ++NI++  F + G   +  E 
Sbjct: 512 PDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEM 571

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F+ +KH G+KP+ +TY +L+  ++ AG+  +   ++R++++     D   ++ I+ A G 
Sbjct: 572 FETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGN 631

Query: 409 AGDVEK 414
             D EK
Sbjct: 632 V-DHEK 636



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 7/261 (2%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           D  TY  LI+   +   +  + + + E+   +Y+ +  S    + ++   G+AK   +  
Sbjct: 125 DCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSV--SPAVLSELVKALGRAKMVSKAL 182

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 299
           S F    +   C P   T NS+I      G  EK+ + Y E  N      D  T + L  
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           SY + G  D    + D M+     PT   Y  ++  + K G +EK  + F++MK  G  P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
              TY  L+    KAG + +     + +    +  D  F N +++  G+ G VE++  +F
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361

Query: 420 LTMKERHCVPDNITFATMIQA 440
             M    C P  +++ T+I+A
Sbjct: 362 SEMGMWRCTPTVVSYNTVIKA 382



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            L+ L K+ GRA M  K  SV    + R   PT  TYN VI    + G  EK+ E + +M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query: 353 KHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQ 408
            + G   P++ITY +L+S+Y K G   + DS +R   +++++ +      +  ++  Y +
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G VEK  +LF  MK   C P   T+  +I+     G  + A      M+
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 35/188 (18%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K+++ A ++F  L++  +     + +  ++   GKC +  +A  LF  M + G  P V
Sbjct: 456 KAKRYEAANELFKELKEN-FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDV 514

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSV------------------------------- 178
             Y AL+S   ++G+++EA S +  M+                                 
Sbjct: 515 YAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFET 574

Query: 179 ---SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S  KPD  TY+ L+        F+   +++ EM   G E  A+TY++I+D  G    
Sbjct: 575 IKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDH 634

Query: 236 FEEMESSF 243
            ++  SSF
Sbjct: 635 EKDDVSSF 642


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTA 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 72

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYV 131

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 72  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTASYSTLLTMY 130

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 131 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 189

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 190 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 353
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 247 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 306

Query: 354 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 366

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 367 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 422


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 2/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P   +YT ++  + ++GL+ +A    ++M     C PDV TY+ L+    K  R   
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLD 69

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            E +L EM   G+     T+ T+I GY    K ++    F  M+      PDI T N++I
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLI 128

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 G+++K    +++ +   +  +  T +IL  S+   G  +     +D M  +   
Sbjct: 129 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 188

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P ++TYN +I+ + ++G++ K +++ +KM    + P+ ITY +L+  Y K   +     +
Sbjct: 189 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L  +E   V  D   +N +I+ +   G+V++ G +F  M  +   PD  T+ +MI  +  
Sbjct: 249 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 308

Query: 444 LGMTEAAQNLENKMI 458
            G ++ A  L ++M+
Sbjct: 309 AGNSKEAFQLHDEML 323



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%)

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
           +  E    G+  D     ++   + RAG+      V D M      P VVTYN ++    
Sbjct: 3   YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 62

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K   +   E    +M+ RG+ P+  T+ +L+  Y   G + K   +   + N  +  D  
Sbjct: 63  KERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIV 122

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +N +I    + GD++K  +L+  M  R   P+++T++ +I ++   G  E A    ++M
Sbjct: 123 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM 182

Query: 458 I 458
           I
Sbjct: 183 I 183



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 101/254 (39%), Gaps = 36/254 (14%)

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EM   G+    V Y  +I G+ +A    +       MV  G C PD+ T N++++   
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLC 62

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
               +   E   NE                                   M++R   P + 
Sbjct: 63  KERRLLDAEGLLNE-----------------------------------MRERGVPPDLC 87

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           T+  +I  +   G ++K  + F  M ++ ++P+ +TY +L+    + G + K + +   +
Sbjct: 88  TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 147

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            + ++  +   ++ +I ++ + G VE        M  +  +P+ +T+ ++I+ Y   G  
Sbjct: 148 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 207

Query: 448 EAAQNLENKMIAMK 461
              Q    KM+  K
Sbjct: 208 SKGQKFLQKMMVNK 221



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M+ + + P +  Y  L+  Y +   + +AF  +N M+     +PDV TY++LI   +   
Sbjct: 217 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGFSVHG 275

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                  I  +M   GIE    TY ++I+G+  A   +E       M++ G    D F
Sbjct: 276 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 333


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 167/348 (47%), Gaps = 2/348 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T   ++  L K ++ E        M   G+ P V  Y  L++AY + GLL+EAF 
Sbjct: 94  QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 153

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            ++ M S    KP V+TY+ +I    K  ++   + +L EM  +G+     TYN ++   
Sbjct: 154 LMDSM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 212

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +     + E  F  M  S G  PD+ + +++I     +G +++  K++ +    G+  D
Sbjct: 213 CRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 271

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
                IL   + R G+  +   V D M ++     VVTYN ++    K   + + +E F 
Sbjct: 272 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 331

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  RG+ P+  T+ +L++ YSK G + K  ++   +   ++  D   +N +I  + +  
Sbjct: 332 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 391

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++EK+ EL+  M  R   P++I++  +I  Y  +G    A  L ++M+
Sbjct: 392 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 439



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 165/326 (50%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +L K    +QA   F  M + GL P   +YT L+  + ++G++ EA    ++M
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 298

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  DV TY+ ++    K       +++  EM+  G+     T+ T+I+GY K   
Sbjct: 299 LE-QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 357

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  + F  M++     PD+ T N++I  +     +EK+ + +N+     +  +  +  
Sbjct: 358 MNKAVTLFEMMIQRN-LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 416

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y   G   +   + D M ++ F  T++T N +++ + +AG+  K +E+   M  +
Sbjct: 417 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 476

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ ITY +L++ + K   + +  +++ ++ENS ++ D   +N I++ + + G +++ 
Sbjct: 477 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEA 536

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             + L M ER   PD  T+ ++I  +
Sbjct: 537 ELIMLKMIERGVNPDRSTYTSLINGH 562



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 161/361 (44%), Gaps = 39/361 (10%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F V+ S GL  S++   +L+    + G +D A+    ++   S  + +VYT +I+I +  
Sbjct: 50  FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR-SGVQVNVYTLNIMINALC 108

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K  + +  +  L++M   G+    VTYNT+I+ Y +    EE      +M    G  P +
Sbjct: 109 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKPCV 167

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMD 315
           FT N++I+    +G   + +   +E   +G+  D  T NIL     R   M D  R + D
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER-IFD 226

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  +   P +V+++ +I    K G +++  +YF+ MK+ G+ P+++ Y  L+  + + G
Sbjct: 227 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 286

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCI--------------------------------- 402
           ++ +   +  ++     +LD   +N I                                 
Sbjct: 287 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 346

Query: 403 --ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             I+ Y + G++ K   LF  M +R+  PD +T+ T+I  +      E    L N MI+ 
Sbjct: 347 TLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 406

Query: 461 K 461
           +
Sbjct: 407 R 407



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 126/280 (45%), Gaps = 1/280 (0%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            +C  +   + +L+++  +  +     +    +   G+  S    N+++ G  K    + 
Sbjct: 21  GNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDL 80

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               +  +V SG    +++TLN MI+A   +  IE  + + ++    GV  D+ T N L 
Sbjct: 81  AWEIYQEVVRSG-VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y R G+ ++   +MD M  +   P V TYN +I    K G   + +    +M   GM 
Sbjct: 140 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P++ TY  L+    +   +M  + I  ++ +  V+ D   F+ +I    + G +++  + 
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           F  MK     PDN+ +  +I  +   G+   A  + ++M+
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 299



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 114 CQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           C T  K     G C+     +A      ML  G+ P    Y  L++ + +   +D AF+ 
Sbjct: 450 CNTIVK-----GYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFAL 504

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +N M++ S   PDV TY++++   ++  R    E I+ +M   G+     TY ++I+G+ 
Sbjct: 505 VNKMEN-SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 563

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIF 257
                +E       M++ G    D F
Sbjct: 564 TQNNLKEAFRVHDEMLQRGFVPDDKF 589


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  136 bits (342), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 16/349 (4%)

Query: 117  FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
             + ++ MLG  K   QA  +F  + +   +P    Y +++      G  ++     N+M 
Sbjct: 1152 LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMS 1211

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
            +   C PD  TYS LI +  K  R D   ++L EM  +G++ +   Y  +I       D 
Sbjct: 1212 TEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDA 1271

Query: 230  YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            +G    FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + 
Sbjct: 1272 HGALSLFEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP 1323

Query: 290  DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
            D   +N +    G+AG  D    +   M+     P+VVTYN +I+  F       ++  +
Sbjct: 1324 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSW 1383

Query: 349  FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            F++MK  G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+
Sbjct: 1384 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 1443

Query: 409  AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            A   +   ELF  +KE         +A MI+     G  + A N+ ++M
Sbjct: 1444 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 1492



 Score =  133 bits (335), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 3/348 (0%)

Query: 111  QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
            Q   + +T L+ +  K      A  LFE M     +P V  YT L+   G++G +DEA+ 
Sbjct: 1252 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 1311

Query: 171  TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               +M+    C+PD    + +I    K  R D   K+  EM  L    S VTYNTII   
Sbjct: 1312 FFCEMQR-EGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 1370

Query: 231  GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             ++K +  E+ S F  M ESG   P  FT + +I  +  +  +EK      E +  G   
Sbjct: 1371 FESKSRASEVPSWFERMKESG-ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 1429

Query: 290  DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                   L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 1430 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 1489

Query: 350  KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             +M   G  P+   Y +L+S  ++ G++ +  S +R+++    I D   +N I++   + 
Sbjct: 1490 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 1549

Query: 410  GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            G   +  E+   MK+    PD +++ T++ A +  GM E A  L  +M
Sbjct: 1550 GGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 152/348 (43%), Gaps = 39/348 (11%)

Query: 97   ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            AL +F  +R Q + +    T+T+L+  LGK  + ++A   F  M  +G +P       ++
Sbjct: 1274 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI 1332

Query: 157  SAYGQSGLLDEAFSTINDMKSV-----------------------------------SDC 181
            +  G++G LD+A     +M+++                                   S  
Sbjct: 1333 NFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI 1392

Query: 182  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
             P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++    
Sbjct: 1393 SPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 1452

Query: 242  SFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L   
Sbjct: 1453 LFQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 1510

Query: 301  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
              R GM D+  S M  MQ+    P + +YNI++    K G   +  E    MK   ++P+
Sbjct: 1511 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 1570

Query: 361  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             ++Y +++ A S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 1571 VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 6/229 (2%)

Query: 116  TFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +FT  +++ G CK  + E+A +L E M   G  P    Y +L+ A G++   D A     
Sbjct: 1396 SFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 1455

Query: 174  DMKSVSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            ++K   +C       Y+++IK   K  R D    +  EM+ LG       YN ++ G  +
Sbjct: 1456 ELKE--NCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 1513

Query: 233  AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +E  S+   M E G C PDI + N +++    +G   +  +  +      V+ D+ 
Sbjct: 1514 TGMLDEALSTMRRMQEHG-CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVV 1572

Query: 293  TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            + N +  +   AGM+++   +M  M    F   ++TY+ ++E  GK  H
Sbjct: 1573 SYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 1621



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 1/241 (0%)

Query: 222  TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            TY  +I      +++ EM      MV +  C      L+ ++   GN+  + +    + +
Sbjct: 1115 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQ 1174

Query: 282  FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 340
                  +   Q  N +       G Y+K+  + + M      FP  VTY+ +I  F K G
Sbjct: 1175 IKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLG 1234

Query: 341  HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
              +   +   +MK  GM+P +  Y  L++ + K        S+  ++ +     D   + 
Sbjct: 1235 RRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 1294

Query: 401  CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             +I   G+AG +++    F  M+   C PD +    MI      G  + A  L  +M  +
Sbjct: 1295 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 1354

Query: 461  K 461
            +
Sbjct: 1355 R 1355


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 165/334 (49%), Gaps = 4/334 (1%)

Query: 127  CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
            CKQ +  +A  L +   S G+     +Y +L+       L+D A     +MK +  C PD
Sbjct: 856  CKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG-CGPD 914

Query: 185  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             +TY++L+ +  K  R + + K+  EM   G E + VTYNTII G  K+++ E+    + 
Sbjct: 915  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 974

Query: 245  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             ++ S G  P   T   ++     +G IE  E  +NE    G KA+    NIL   +  A
Sbjct: 975  NLM-SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIA 1033

Query: 305  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            G  +K+  +   M  +   P + +Y I+I+T  KAG +     YF+++   G++P+ ITY
Sbjct: 1034 GNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITY 1093

Query: 365  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
              L+    K+  + +  S+  +++   ++ +   +N +I   G+AG   + G+++  +  
Sbjct: 1094 NLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT 1153

Query: 425  RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +   P+  T+  +I+ Y+  G T++A     +MI
Sbjct: 1154 KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMI 1187



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 153/324 (47%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  ++ VM+ DG+ PSV  Y+ L+ A+G+   ++     + +M
Sbjct: 287 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 346

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    KP+VY+Y+I I+   +  RFD   +ILA+M   G +   +T+  +I     A +
Sbjct: 347 EA-HGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGR 405

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M +S    PD  T  +++  +G++G+ + + + +N     G   ++    
Sbjct: 406 ISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYT 464

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  + G   +   + D M+++   P   +YN +I  F KA       E FK M   
Sbjct: 465 AVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH 524

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G KPN  T+   ++ Y K+G  +K       +++  ++ D    N ++    ++G +   
Sbjct: 525 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMA 584

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
             +F  +K     PD IT+  MI+
Sbjct: 585 KRVFHELKAMGVSPDTITYTMMIK 608



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 166/377 (44%), Gaps = 35/377 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV  GK +  E    L   M + G+KP+V  YT  +   GQ+   DEA+  +  
Sbjct: 321 RTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAK 380

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--- 231
           M++   CKPDV T+++LI+      R    + +  +M     +   VTY T++D +G   
Sbjct: 381 MEN-EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNG 439

Query: 232 ------------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLN 260
                       KA  + +   +++A++++                    G  P+ ++ N
Sbjct: 440 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 499

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+IS +  +       + +   ++ G K +  T  +    YG++G   K     + M+ +
Sbjct: 500 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 559

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV  N V+    K+G +   +  F ++K  G+ P++ITY  ++   SKA    + 
Sbjct: 560 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 619

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I   +  ++ + D    N +I    +AG  ++   +F  +KE +  P + T+ T++  
Sbjct: 620 VKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAG 679

Query: 441 YNALGMTEAAQNLENKM 457
               G  +   +L  +M
Sbjct: 680 LGREGKVKEVMHLLEEM 696



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 152/323 (47%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G     +    ++  M +DG   +V  YTA++ A  Q G + EA    ++M
Sbjct: 427 TYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 486

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P+ Y+Y+ LI    K  RF    ++   M   G + +  T+   I+ YGK+ +
Sbjct: 487 KQ-KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGE 545

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    +  M +S G  PD+   N+++     SG +   ++ ++E   MGV  D  T  
Sbjct: 546 SIKAIQRYELM-KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 604

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K   +A  +D+   +   M +    P V+  N +I+T  KAG  ++    F ++K  
Sbjct: 605 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEM 664

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P   TY +L++   + G + +V  +L ++ +S+   +   +N I+    + G V   
Sbjct: 665 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 724

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++  +M  + C+PD  ++ T+I
Sbjct: 725 LDMLYSMTTKGCIPDLSSYNTVI 747



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 2/355 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+Q  +A   TF  +   LG       A +   VM   G+  +   Y  LV    +SG  
Sbjct: 242 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 301

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA      M  V    P V TYS+L+ +  K    + +  +L EM   G++ +  +Y  
Sbjct: 302 REALEVYRVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 360

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            I   G+AK+F+E     + M E+ GC PD+ T   +I    ++G I   +  + +    
Sbjct: 361 CIRVLGQAKRFDEAYRILAKM-ENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 419

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
             K D  T   L   +G  G    +  + + M+   +   VV Y  VI+   + G + + 
Sbjct: 420 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 479

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E F +MK +G+ P   +Y SL+S + KA        + + ++      +       I+ 
Sbjct: 480 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 539

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           YG++G+  K  + +  MK +  VPD +    ++      G    A+ + +++ AM
Sbjct: 540 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 594



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 117/255 (45%), Gaps = 2/255 (0%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
             ++ Y++   T+  ++  L K ++ EQA  L+  ++S G  P+   Y  L+    ++G +
Sbjct: 942  HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 1001

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            ++A +  N+M     CK +   Y+IL+         + +  +  +M   GI     +Y  
Sbjct: 1002 EDAENLFNEMLEYG-CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTI 1060

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            IID   KA +  +  + F  ++E G   PD+ T N +I   G S  +E+    +NE    
Sbjct: 1061 IIDTLCKAGQLNDGLTYFRQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1119

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G+  ++ T N L    G+AG   +   + + +  + + P V TYN +I  +  +G  +  
Sbjct: 1120 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1179

Query: 346  EEYFKKMKHRGMKPN 360
               + +M   G  PN
Sbjct: 1180 YAAYGRMIVGGCLPN 1194



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 156/409 (38%), Gaps = 38/409 (9%)

Query: 85   LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +D   K  +   A +IF  L++    +    T+  L+  LG+  + ++   L E M    
Sbjct: 642  IDTLYKAGRGDEAWRIFYQLKEMN-LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 700

Query: 145  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
              P++  Y  ++    ++G +++A   +  M +   C PD+ +Y+ +I    K  R++  
Sbjct: 701  YPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSSYNTVIYGLVKEERYNEA 759

Query: 205  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------------------------ME 240
              I  +M  + I   A T  TI+  + K    +E                        ME
Sbjct: 760  FSIFCQMKKVLIPDYA-TLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLME 818

Query: 241  S-----------SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                         F+ ++ S G   D F L  +I          +  +   +F   GV  
Sbjct: 819  GILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSL 878

Query: 290  DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                 N L        + D    +   M++    P   TYN++++  GK+  IE+M +  
Sbjct: 879  KTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQ 938

Query: 350  KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            ++M  +G +   +TY +++S   K+  + +   +   + +         +  ++    +A
Sbjct: 939  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 998

Query: 410  GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G +E    LF  M E  C  +   +  ++  +   G TE   +L   M+
Sbjct: 999  GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 1047



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + N M+      G +  M + ++      VKA++ T   +    G  G        +  M
Sbjct: 217 SCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 276

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++        TYN ++    K+G   +  E ++ M   G+ P+  TY  L+ A+ K   +
Sbjct: 277 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 336

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +LR++E   V  +   +   I   GQA   ++   +   M+   C PD IT   +
Sbjct: 337 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVL 396

Query: 438 IQAYNALGMTEAAQNLENKM 457
           IQ     G    A+++  KM
Sbjct: 397 IQVLCDAGRISDAKDVFWKM 416



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 7/210 (3%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
            ++++ SA G +  +E+      +  +    A    +  L + +GR G    M  V D M
Sbjct: 185 VIHALRSADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVG---DMAEVFDVM 241

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           Q++     V T+  +    G  G +         MK  G+  N+ TY  LV    K+G  
Sbjct: 242 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 301

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   + R +    V+     ++ ++ A+G+  DVE +  L   M+     P+  ++   
Sbjct: 302 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 361

Query: 438 IQAYNALGMTEAAQNLENKMIAMKENSGKK 467
           I+        + A  +  KM    EN G K
Sbjct: 362 IRVLGQAKRFDEAYRILAKM----ENEGCK 387


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTA 122

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 241

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 301

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYV 132

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++ N +
Sbjct: 133 ENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVV 192

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 159/369 (43%), Gaps = 46/369 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 70  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLL 128

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 129 TMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 187

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 188 ETNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 246

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 247 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQVLYQTMIV 304

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H    P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 305 AYERAGLVA----HAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 395 DTPFFN-----------------------------------CIISAYGQAGDVEKMGELF 419
           D   F                                     +++AYG+  +++K  +++
Sbjct: 361 DITVFERMIHLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVY 420

Query: 420 LTMKERHCV 428
           + M+E  CV
Sbjct: 421 MEMQEVGCV 429


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 169/372 (45%), Gaps = 10/372 (2%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           +   L  F  +R ++    +C +F   + +  +     +A  + E M   G+ P+  +Y 
Sbjct: 274 YTTVLNGFAEIRDEE----KCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYA 329

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++  Y + G    AF    DM S +  KPD+  Y+IL+ +  K  R D    +L  +  
Sbjct: 330 MIMDGYARGGDFTAAFKVWEDMVS-AGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEA 388

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             +  +  TY +I+DGY K    ++    F   +++ G  P + + NS++S    +  +E
Sbjct: 389 NRLLPTIETYTSILDGYVKGGNIQKALEVFD-RIKTAGLRPGVVSYNSLLSGLAKARQME 447

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                 NE    GV    +    LT+ Y R G  +K   V   M+K      +V Y  ++
Sbjct: 448 NARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALL 507

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYSKAGLIMKVDSILRQVENSDV 392
           +    +G +    E F+++   G+K N ITYC+++  AY++AG + + + ++  +E    
Sbjct: 508 KACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGT 567

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNALGMTEA 449
             DT  +N +I+AYG +G  E M  L   M     +   PD  T+ T+IQ Y   G    
Sbjct: 568 KPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPR 627

Query: 450 AQNLENKMIAMK 461
           A+ L   +  +K
Sbjct: 628 AEELFQGLARLK 639



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 166/356 (46%), Gaps = 20/356 (5%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             +T L+    + +  E A    E MLS G++ +  V+ +++S Y  +G  + A      
Sbjct: 167 HIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEK 226

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            K+  +  P    Y+ ++++  +    + +E +LA+M   G + +   Y T+++G+ + +
Sbjct: 227 FKA-ENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIR 285

Query: 235 KFEEMESSFSAM------------------VESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             E+  S F  +                  ++  G  P+      ++  Y   G+     
Sbjct: 286 DEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAF 345

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K + +    G+K DI   NIL  ++ +AG  DK   V++ ++     PT+ TY  +++ +
Sbjct: 346 KVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGY 405

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K G+I+K  E F ++K  G++P  ++Y SL+S  +KA  +     +L ++  + V+   
Sbjct: 406 VKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSE 465

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA-YNALGMTEAAQ 451
             +  +   Y + GDVEK   +F  MK+ +   D + +  +++A  N+  M  AA+
Sbjct: 466 RIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAE 521



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 40/287 (13%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K    Q AL++F  ++     +    ++  L+  L K +Q E A L+   ML++G
Sbjct: 402 LDGYVKGGNIQKALEVFDRIKTAGL-RPGVVSYNSLLSGLAKARQMENARLMLNEMLANG 460

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + PS  +YTAL   Y ++G +++AF     MK   +   D+  Y  L+K+C         
Sbjct: 461 VVPSERIYTALTEGYARTGDVEKAFGVFQRMKK-ENLAIDIVAYGALLKACCNSGAMHGA 519

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++  +++  G++ + +TY T++DG                                   
Sbjct: 520 AEVFQQITDAGLKHNQITYCTMLDG----------------------------------- 544

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RF 321
           AY  +G +E+ E+  +     G K D    N L  +YG +G ++ M +++  M K   + 
Sbjct: 545 AYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQ 604

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
             P + TYN +I+ + +AG I + EE F+ +    + P++ T+ +L+
Sbjct: 605 TKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG + K+ +    + K    P +  Y ++++ + + G        F+ M+   +KPN   
Sbjct: 113 AGNWHKIVNAFQVIDK----PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y SL+ AY++A  +    +   ++ +  + L+   F  IIS Y  AG+ E     F   K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             + VP  I + +++QAY   G  E  + L  +M
Sbjct: 229 AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQM 262



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 21/253 (8%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y  ++D Y +        ++F AM  S    P++    S+I AY  + ++E       E 
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASH-IKPNVHIYTSLIHAYAEARDMEGAVACTEEM 192

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G++ +      +   Y  AG  +      +  +     P  + YN +++ + +AG++
Sbjct: 193 LSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNM 252

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYS-------------------KAGLIMKVDSI 383
           E +E    +M+  G + N   Y ++++ ++                   +AG + K   I
Sbjct: 253 ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDI 312

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L +++   V  +   +  I+  Y + GD     +++  M      PD + +  ++ A+  
Sbjct: 313 LEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCK 372

Query: 444 LG-MTEAAQNLEN 455
            G M +A   LEN
Sbjct: 373 AGRMDKALGVLEN 385



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           ++GN  K+    N F ++  K  ++   +L   Y R G     R+  + M+     P V 
Sbjct: 112 DAGNWHKI---VNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVH 167

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y  +I  + +A  +E      ++M  +G++ N   +CS++S Y+ AG     +    + 
Sbjct: 168 IYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKF 227

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
           +  +++     +N I+ AY QAG++E +  L   M+E
Sbjct: 228 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEE 264


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 160/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK  + E+ S L + M S G  P +  Y  L+ A+ QSG + EA      M
Sbjct: 47  TYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 106

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C P+  TYSIL+    +  R+D +  +  EM     E +A TYN +I+ +G+   
Sbjct: 107 QG-AGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGY 165

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E+ + F  MVE     P++ T   +I A G  G  E  +K     N  GV    +   
Sbjct: 166 FKEVVTLFHDMVEEN-VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYT 224

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            + ++YG+A +Y++     + M +    PTV TYN +I+ F K G  ++ E    KM   
Sbjct: 225 GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 284

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  T+  ++ A+ + G   +      ++E +    D      ++S Y  AG VE+ 
Sbjct: 285 GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEES 344

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            E F  +K    +P  + +  M+  Y      + A  L ++M
Sbjct: 345 EEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 386



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 169/341 (49%), Gaps = 2/341 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           QA   T+  L+    +    ++A ++F  M   G+ P +  Y+ LV  +G+   L++   
Sbjct: 7   QADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSE 66

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            + +M+S     PD+ +Y++L+++  +         +  +M   G   +A TY+ +++ Y
Sbjct: 67  LLKEMES-GGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           G+  +++++   F  M  S    P+  T N +I+ +G  G  +++   +++     V+ +
Sbjct: 126 GRHGRYDDVRDLFLEMKVSN-TEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPN 184

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           ++T   L  + G+ G+++  + ++  M ++   P+   Y  VIE +G+A   E+    F 
Sbjct: 185 METYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFN 244

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M   G KP   TY SL+  ++K GL  + ++IL ++  S V  +   FN +I A+ Q G
Sbjct: 245 TMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGG 304

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
             E+  + ++ M++  C PD  T   ++  Y   G+ E ++
Sbjct: 305 QFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESE 345



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 135/276 (48%), Gaps = 1/276 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           + D+ TY+ L+ +C +    D  E +   M+  GI     TY+ +++ +GK  + E++  
Sbjct: 7   QADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSE 66

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
               M ESGG  PDI + N ++ A+  SG+I++    + +    G   +  T +IL   Y
Sbjct: 67  LLKEM-ESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           GR G YD +R +   M+     P   TYNI+I  FG+ G+ +++   F  M    ++PN 
Sbjct: 126 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 185

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY  L+ A  K GL      IL  +    V+  +  +  +I AYGQA   E+    F T
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 245

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M E    P   T+ ++IQ +   G+ + ++ +  KM
Sbjct: 246 MNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKM 281



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 93/173 (53%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ADI T N L  +  R G+ D+   V   M +    P + TY+ ++ETFGK   +EK+
Sbjct: 5   GIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 64

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E  K+M+  G  P+  +Y  L+ A++++G I +   + RQ++ +  + +   ++ +++ 
Sbjct: 65  SELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNL 124

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           YG+ G  + + +LFL MK  +  P+  T+  +I  +   G  +    L + M+
Sbjct: 125 YGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMV 177



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 106/203 (52%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G   DI T N+++SA    G  ++ E  +   N  G+  DI T + L +++G+    +K+
Sbjct: 5   GIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 64

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M+    FP + +YN+++E   ++G I++    F++M+  G  PN+ TY  L++ 
Sbjct: 65  SELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNL 124

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y + G    V  +  +++ S+   +   +N +I+ +G+ G  +++  LF  M E +  P+
Sbjct: 125 YGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPN 184

Query: 431 NITFATMIQAYNALGMTEAAQNL 453
             T+  +I A    G+ E A+ +
Sbjct: 185 METYEGLIFACGKGGLHEDAKKI 207



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 57/106 (53%)

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+H G++ + +TY +L+SA ++ GL  + + + R +    ++ D   ++ ++  +G+   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +EK+ EL   M+     PD  ++  +++A+   G  + A  +  +M
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 106


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 171/379 (45%), Gaps = 38/379 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++ G+  Q     A+  T   ++  L    +  +A  LFE +   G+KP    Y AL+
Sbjct: 290 ALQLLGMA-QATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALL 348

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE----------- 205
             Y ++G L +A   +++M+      PD +TYS+LI +     R++              
Sbjct: 349 KGYVKTGPLKDAELMVSEMEK-RGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDV 407

Query: 206 ------------------------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
                                   ++L EM  +G++     YN +ID +GK    +   +
Sbjct: 408 QPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMT 467

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           +F  M+ S G  PD  T N++I  +   G     E+ +      G      T NI+  SY
Sbjct: 468 TFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 526

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G    +D M+ ++  M+ +   P VVT+  +++ +GK+G      E  ++MK  G+KP+S
Sbjct: 527 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 586

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L++AY++ GL  +  +  R + +  +       N +I+A+G+     +   +   
Sbjct: 587 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 646

Query: 422 MKERHCVPDNITFATMIQA 440
           MKE    PD +T+ T+++A
Sbjct: 647 MKENGVKPDVVTYTTLMKA 665



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 149/338 (44%), Gaps = 2/338 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q    +++   K   P +A  L  +  + GL        +++SA   SG   EA +   +
Sbjct: 272 QLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEE 331

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  S  KP    Y+ L+K   K       E +++EM   G+     TY+ +ID Y  A 
Sbjct: 332 LRQ-SGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAG 390

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++E        M E+G   P+ F  + +++ Y + G  +K  +   E   +GVK D Q  
Sbjct: 391 RWESARIVLKEM-ETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFY 449

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N++  ++G+    D   +  D M      P  VT+N +I+   K G     EE F+ M+ 
Sbjct: 450 NVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER 509

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG  P + TY  ++++Y        +  +L ++++  ++ +      ++  YG++G    
Sbjct: 510 RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFND 569

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             E    MK     P +  +  +I AY   G++E A N
Sbjct: 570 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVN 607



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 151/316 (47%), Gaps = 2/316 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+       + E A ++ + M +  ++P+  V++ L++ Y   G   + F  + +
Sbjct: 377 HTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKE 436

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS+   KPD   Y+++I +  KF+  D        M   GIE   VT+NT+ID + K  
Sbjct: 437 MKSIG-VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 495

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +    E  F AM E  GC P   T N MI++YG+    + M++   +    G+  ++ T 
Sbjct: 496 RHIVAEEMFEAM-ERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 554

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   YG++G ++     ++ M+     P+   YN +I  + + G  E+    F+ M  
Sbjct: 555 TTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTS 614

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+KP+ +   SL++A+ +     +  ++L+ ++ + V  D   +  ++ A  +    +K
Sbjct: 615 DGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQK 674

Query: 415 MGELFLTMKERHCVPD 430
           +  ++  M    C PD
Sbjct: 675 VPGVYEEMIMSGCKPD 690



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 159/343 (46%), Gaps = 9/343 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL+ A  ++  +++A + I+ M+
Sbjct: 172 YSILIHALGRSEKLYEAFLLSQ---KQTLTPLT--YNALIGACARNNDIEKALNLISRMR 226

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                + D   YS++I+S T+ ++ D  +++++  E+    +E      N II G+ K+ 
Sbjct: 227 Q-DGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSG 285

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                      M ++ G      TL S+ISA  NSG   + E  + E    G+K   +  
Sbjct: 286 D-PSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAY 344

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y + G       ++  M+KR   P   TY+++I+ +  AG  E      K+M+ 
Sbjct: 345 NALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMET 404

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++PNS  +  L++ Y   G   K   +L+++++  V  D  F+N +I  +G+   ++ 
Sbjct: 405 GDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 464

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               F  M      PD +T+ T+I  +   G    A+ +   M
Sbjct: 465 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM 507



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 23/293 (7%)

Query: 86  DEAIKQKKWQL--ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           D    QK +Q+   +K  G+   +Q+Y     TF       GK    + A   F+ MLS+
Sbjct: 423 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTF-------GKFNCLDHAMTTFDRMLSE 475

Query: 144 GLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           G++P    +  L+  + + G   + +E F  +        C P   TY+I+I S     R
Sbjct: 476 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RGCLPCATTYNIMINSYGDQER 531

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           +D ++++L +M   GI  + VT+ T++D YGK+ +F +       M +S G  P     N
Sbjct: 532 WDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEM-KSVGLKPSSTMYN 590

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           ++I+AY   G     E+  N F +M   G+K  +  LN L  ++G      +  +V+ +M
Sbjct: 591 ALINAYAQRG---LSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYM 647

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           ++    P VVTY  +++   +    +K+   +++M   G KP+      L SA
Sbjct: 648 KENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDRKARSMLRSA 700


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 169/360 (46%), Gaps = 45/360 (12%)

Query: 117 FTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G CK   P++A  +F+  L  GL+PS+ +Y  L+    Q GL+  A   +N+
Sbjct: 331 FTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNE 390

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M   + C P+++TY+++I    K                  + C +   + + D   K  
Sbjct: 391 MAE-NGCLPNIWTYNLVINGLCK------------------MGCVSDASHLVDDAIAK-- 429

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                           GC PDIFT N++I  Y     ++   +  N     G+  D+ T 
Sbjct: 430 ----------------GCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITY 473

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +AG  +++  +   M+++   P ++TYNI++++  KA  + +  +   +MK 
Sbjct: 474 NTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKS 533

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVE 413
           +G+KP+ +++ +L + + K G I     + R++E   DV   T  +N I+SA+ +  ++ 
Sbjct: 534 KGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMN 593

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA----AQNLENKMIAMKENSGKKL 468
              +LF  MK   C PDN T+  +I  +  +G +T+      +N+E + I      G+ L
Sbjct: 594 MAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVL 653



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 146/324 (45%), Gaps = 17/324 (5%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  LF+ ML+  L P V  +  LV    + GL+ E+   +  +     C P+++T+
Sbjct: 196 EHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC-PNLFTF 254

Query: 189 SILIKSCTKFHRFDL---------IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +I ++   +    D           E+ L +M   G E   +TYN+IIDGY K    ++ 
Sbjct: 255 NIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDA 314

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                  V   G  PD FT  S+I+ +   G+ ++    + +    G++  I   N L K
Sbjct: 315 NRVLKDAVFK-GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIK 373

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              + G+      +M+ M +    P + TYN+VI    K G +            +G  P
Sbjct: 374 GLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPP 433

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVE---NSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +  TY +L+  Y K    +K+DS    V    +  +  D   +N +++   +AG  E++ 
Sbjct: 434 DIFTYNTLIDGYCKQ---LKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM 490

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           E+F  M+E+ C P+ IT+  ++ +
Sbjct: 491 EIFKAMEEKGCTPNIITYNIIVDS 514



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 156/377 (41%), Gaps = 46/377 (12%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+  + ++A   FE M      PSV  + A+++   + G  ++A      M+     + D
Sbjct: 87  GRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRD-RGVQSD 145

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           VYTY+I IKS  K  R     ++L  M  LG + +AV Y T++ G   + + +     F 
Sbjct: 146 VYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFD 205

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+    C PD+   N ++      G + + E+   +    GV  ++ T NI  +   R 
Sbjct: 206 EMLARCLC-PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCRE 264

Query: 305 GMYDK------MRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           G  D+      +    ++++K     F P  +TYN +I+ + K G ++      K    +
Sbjct: 265 GALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFK 324

Query: 356 GMKPNSITYCSLVSAY-----------------------------------SKAGLIMKV 380
           G KP+  TYCSL++ +                                   S+ GLI+  
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPA 384

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             ++ ++  +  + +   +N +I+   + G V     L      + C PD  T+ T+I  
Sbjct: 385 LQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG 444

Query: 441 YNALGMTEAAQNLENKM 457
           Y      ++A  + N+M
Sbjct: 445 YCKQLKLDSATEMVNRM 461



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 133/354 (37%), Gaps = 66/354 (18%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A    N  KS    K    TY  +++       F+ +EK+L+EM            N +
Sbjct: 22  KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEM-------RENVNNAL 74

Query: 227 IDG--------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           ++G        YG+  K +E   +F  M +   C P + + N++++     G   +  K 
Sbjct: 75  LEGAYIEAMKNYGRKGKVQEAVDTFERM-DFYNCDPSVHSHNAIMNILVEFGYHNQAHKV 133

Query: 279 YNEFNLMGVKADIQTLNILTKSYGR------------------------------AGMY- 307
           Y      GV++D+ T  I  KS+ +                              AG+Y 
Sbjct: 134 YMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYD 193

Query: 308 ----DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               D  R + D M  R   P VV +N ++    K G + + E    K+  RG+ PN  T
Sbjct: 194 SGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFT 253

Query: 364 YCSLVSAYSKAGL---------IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +   V    + G          +++ +  LR++ N     D   +N II  Y + G V+ 
Sbjct: 254 FNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQD 313

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 468
              +      +   PD  T+ ++I  +   G  + A      M   K+  GK L
Sbjct: 314 ANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRA------MAVFKDGLGKGL 361



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 19/257 (7%)

Query: 117 FTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G CKQ   + A+ +   M S G+ P V  Y  L++   ++G  +E       
Sbjct: 436 FTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKA 495

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---- 230
           M+    C P++ TY+I++ S  K  + +    +L EM   G++   V++ T+  G+    
Sbjct: 496 MEE-KGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIG 554

Query: 231 ---GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
              G  + F  ME  +        CH    T N ++SA+    N+    K ++     G 
Sbjct: 555 DIDGAYQLFRRMEKQYDV------CHTTA-TYNIIVSAFSEQLNMNMAMKLFSVMKNSGC 607

Query: 288 KADIQTLNILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
             D  T  ++   + + G +    + +++ M+KR F P++ T+  V+        + +  
Sbjct: 608 DPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKR-FIPSLTTFGRVLNCLCVKDKVHEAV 666

Query: 347 EYFKKMKHRGMKPNSIT 363
                M  +G+ P ++ 
Sbjct: 667 GIIHLMLQKGIVPETVN 683



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 14/197 (7%)

Query: 95  QLALKIFGLLRQQQWYQARCQ---TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           QL L     +  + W Q       T+  L+  L K  + E+   +F+ M   G  P++  
Sbjct: 448 QLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIIT 507

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  +V +  ++  ++EA   + +MKS    KPDV ++  L     K    D   ++   M
Sbjct: 508 YNIIVDSLCKAKKVNEAVDLLGEMKS-KGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM 566

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
                 C +  TYN I+  + +          FS M  S GC PD +T   +I  +   G
Sbjct: 567 EKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNS-GCDPDNYTYRVVIDGFCKMG 625

Query: 271 NI--------EKMEKWY 279
           NI        E MEK +
Sbjct: 626 NITQGYKFLLENMEKRF 642


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 166/357 (46%), Gaps = 7/357 (1%)

Query: 102 GLLR---QQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           G LR   Q   Y   C   T  +++ G CKQ   +QA    +  +S+G +P    Y  LV
Sbjct: 256 GALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLV 315

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +   + G    A   ++ M  +    PD+YTY+ LI    K    +   KIL +M     
Sbjct: 316 NGLCKIGHAKHAMEVVDAML-LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDC 374

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +AVTYN II    K  + +E  +  + ++ S G  PD+ T NS+I     S N +   
Sbjct: 375 SPNAVTYNAIISSLCKENRVDE-ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAM 433

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             + E    G + D  T N+L  S   +   ++  +++  M+       VV YN +I+ F
Sbjct: 434 DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGF 493

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K   IE+ EE F +M+ +G+  +S+TY +L+    K+  +     ++ Q+    +  D 
Sbjct: 494 CKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDK 553

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +N +++ + + GD++K  ++  TM    C PD +T+AT+I      G  + A  L
Sbjct: 554 FTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRL 610



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 152/354 (42%), Gaps = 37/354 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K    + A  + + ML  GL P +  Y +L+S   + G ++EA   ++ M
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFD-----------------------LIE------- 205
            S  DC P+  TY+ +I S  K +R D                       LI+       
Sbjct: 370 VS-RDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSN 428

Query: 206 -----KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                 +  EM   G      TYN +ID    ++K EE  +    M E  GC  ++   N
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEM-ELNGCARNVVIYN 487

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  +  +  IE+ E+ ++E  L GV  D  T N L     ++   +    +MD M   
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIME 547

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P   TYN ++  F K G I+K  +  + M   G  P+ +TY +L+S   KAG +   
Sbjct: 548 GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVA 607

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
             +LR ++   ++L    +N +I A  +     +   LF  M ++   PD IT+
Sbjct: 608 SRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITY 661



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 171/417 (41%), Gaps = 37/417 (8%)

Query: 75  NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           +  PK ++E L    +Q     AL++F    +Q  +      + +++  LGK    E   
Sbjct: 61  DFTPKQLIETLR---RQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMR 117

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            + E M   G +    ++   V +YG+  L DE    +  M+     KPD   Y++L+  
Sbjct: 118 RVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNV 177

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEM-------- 239
               ++  L+E   + M    I     T+N +I    KA +        EEM        
Sbjct: 178 LVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPD 237

Query: 240 ESSFSAM----VESG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           E++F+ +    +E G               GC     T+N +I+ +   G I++   +  
Sbjct: 238 ETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQ 297

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E    G + D  T N L     + G       V+D M      P + TYN +I    K G
Sbjct: 298 EAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLG 357

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            IE+  +   +M  R   PN++TY +++S+  K   + +   I R + +  ++ D   FN
Sbjct: 358 EIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFN 417

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I     + + +   +LF  MK + C PD  T+  +I +  +    E A NL  +M
Sbjct: 418 SLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEM 474



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L K  Q   A L+ E M S GL P    +T ++  Y + G LD A      M
Sbjct: 205 TFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQM 264

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C     T ++LI    K  R D     + E    G      TYNT+++G  K   
Sbjct: 265 VEYG-CPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGH 323

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +       AM+  GG  PDI+T NS+IS     G IE+  K  ++        +  T N
Sbjct: 324 AKHAMEVVDAML-LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYN 382

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  S  +    D+   +   +  +   P V T+N +I+    + + +   + F++MK +
Sbjct: 383 AIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK 442

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G +P+  TY  L+ +   +  + +  ++L+++E +    +   +N +I  + +   +E+ 
Sbjct: 443 GCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEA 502

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            E+F  M+ +    D++T+ T+I         E A  L ++MI
Sbjct: 503 EEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMI 545


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 162/338 (47%), Gaps = 4/338 (1%)

Query: 122 VMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           VM G CK+   ++A  L  +M     KP   +Y  ++ A+ + G+LD A S +N+MK   
Sbjct: 184 VMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQ-K 242

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +  PD+ TY+ LI    K  +++ +  +  EM +L I     T+N++IDG  K  K E+ 
Sbjct: 243 NIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDA 302

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E   + M+E G   P+  T N ++  Y   G + +  + ++     G++ DI +   L  
Sbjct: 303 EEIMTYMIEKG-VEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALIN 361

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y      DK   +   + +    P++VT ++++    + G  E  + +F +M+  G  P
Sbjct: 362 GYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIP 421

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N  T+C+L+  Y K GL+ +  S   ++E      +   +  +I+   + G ++K    F
Sbjct: 422 NLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATF 481

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +      PD IT+  MI  Y   G+ + A+++  KM
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 7/314 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  LF  M++    PS   ++ L+ A           S   ++  +     D +  S 
Sbjct: 54  DDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLR-IPVDAFALST 112

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++ SC   HR DL   +LA     GI  + VT+ T+I G     K ++    F  +V   
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GV-KADIQTLNILTKSYGRAGMY 307
            C PD     +++      G+    +K ++   LM  G+ K D    NI+  ++ + GM 
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHT---QKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGML 229

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D   S+++ M+++   P ++TY  +I+  GK    EK+   F +M H  + P+  T+ S+
Sbjct: 230 DGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSV 289

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +    K G +   + I+  +    V  +   +N ++  Y   G + +   +F +M ++  
Sbjct: 290 IDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGI 349

Query: 428 VPDNITFATMIQAY 441
            PD I++  +I  Y
Sbjct: 350 EPDIISYTALINGY 363



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 147/321 (45%), Gaps = 11/321 (3%)

Query: 72  KYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ 129
           K KN+ P  +     +D   K  +W+    +F  +     Y   C TF  ++  L K  +
Sbjct: 240 KQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVC-TFNSVIDGLCKEGK 298

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDMKSVSDCKPDVY 186
            E A  +   M+  G++P+   Y  ++  Y   GQ G     F ++ D       +PD+ 
Sbjct: 299 VEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMID----KGIEPDII 354

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           +Y+ LI    +  + D   ++  E+S  G++ S VT + ++ G  +  + E  +  F  M
Sbjct: 355 SYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEM 414

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            ++ G  P+++T  +++  Y  +G +E+    +++        +IQ    +     + G 
Sbjct: 415 -QAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGK 473

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            DK  +  + +      P V+TY  +I  + + G +++ ++  +KM+  G  P++ TY  
Sbjct: 474 LDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNV 533

Query: 367 LVSAYSKAGLIMKVDSILRQV 387
           +V  + ++  + ++ + L+++
Sbjct: 534 IVRGFFRSSKVSEMKAFLKEI 554



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 147/352 (41%), Gaps = 12/352 (3%)

Query: 120 LMVMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           L  ++  C    +  L F V+      G+  +   +T L+        + +A      + 
Sbjct: 110 LSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLV 169

Query: 177 SVSDCKPDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             + C+PD   Y  ++   C K H    FDL+  +   ++    +     YN +ID + K
Sbjct: 170 RENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGIT----KPDTCIYNIVIDAFCK 225

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               +   S  + M +     PDI T  S+I   G     EK+   + E   + +  D+ 
Sbjct: 226 DGMLDGATSLLNEMKQKN-IPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVC 284

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N +     + G  +    +M +M ++   P  +TYN+V++ +   G + +    F  M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSM 344

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G++P+ I+Y +L++ Y +   + K   + R++  + +       + ++    + G  
Sbjct: 345 IDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRT 404

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           E     F  M+    +P+  T  T++  Y   G+ E A +  +K+   +E++
Sbjct: 405 ECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDT 456


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 4/352 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG  +  + Y      FT   ++ G CK  +  +A  L + M    LKP+V VY  L+  
Sbjct: 277 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 336

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G  DEAF  I +M + +  +P+  TY  L++   K  + D    +L +M       
Sbjct: 337 FMREGNADEAFKMIKEMVA-AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 395

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             +TYN II+G+ +    ++     S M E+ G  P+++T + MI     SG  EK    
Sbjct: 396 DTITYNLIIEGHFRHHSKKDAFRLLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    G+K +      L   Y R G       + D M K    P +  YN +I    K
Sbjct: 455 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 514

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +E+  +YF +M+ RG+ PN  TY  L+  Y K G +   + +++++ ++ +  +   
Sbjct: 515 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 574

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +  ++ +Y ++ D+EK+   F +M ++  + DN  +  +I   ++ G  EAA
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAA 626



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 2/307 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L++   +SG ++EAF    DM+      PD +TY  LI    K  R +  + +L EM
Sbjct: 260 YNVLIAGLCRSGAVEEAFGFKKDMEDYG-LVPDGFTYGALINGLCKSRRSNEAKALLDEM 318

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
           S   ++ + V Y  +IDG+ +    +E       MV + G  P+  T ++++      G 
Sbjct: 319 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQ 377

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++      +      + D  T N++ + + R         ++  M+     P V TY+I
Sbjct: 378 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 437

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I    ++G  EK  +  ++M  +G+KPN+  Y  L+S Y + G +     I  ++   +
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 497

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           V+ D   +N +I    + G VE+  + F  M+ER  +P+  T++ +I  Y   G  E+A+
Sbjct: 498 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 557

Query: 452 NLENKMI 458
            L  +M+
Sbjct: 558 QLVQRML 564



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 4/359 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +        +T  +++ G C+  +PE+AS L E M + GLKP+  VY  L+S 
Sbjct: 417 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G +  A    + M  V +  PD+Y Y+ LI   +K  R +   K  A+M   G+  
Sbjct: 477 YCREGNVSLACEIFDKMTKV-NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 535

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +  TY+ +I GY K    E  E     M+++G    D+  ++ ++ +Y  S +IEK+   
Sbjct: 536 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID-LLESYFKSDDIEKVSST 594

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +      GV  D +   IL  +   +G  +    V+  ++K    P V  Y+ +I    K
Sbjct: 595 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 654

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               EK      +M  +G+ PN + Y +L+    K+G I    ++   +    ++ +   
Sbjct: 655 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 714

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +I    + GD+     L+  M      PD   ++ +    ++ G  E A  L  +M
Sbjct: 715 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 171/400 (42%), Gaps = 50/400 (12%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEA-LDEAIKQKKWQLALKI 100
           G+ K    + +K L  E +   ++  V    Y NL    + E   DEA K  K  +A  +
Sbjct: 301 GLCKSRRSNEAKALLDEMSCAELKPNVVV--YANLIDGFMREGNADEAFKMIKEMVAAGV 358

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
                     Q    T+  L+  L K  Q ++ASLL + M+ D  +P    Y  ++  + 
Sbjct: 359 ----------QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHF 408

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           +     +AF  +++M++ +   P+VYTYSI+I    +    +    +L EM+  G++ +A
Sbjct: 409 RHHSKKDAFRLLSEMEN-AGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 467

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             Y  +I GY +          F  M +     PD++  NS+I      G +E+  K++ 
Sbjct: 468 FVYAPLISGYCREGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFA 526

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +                                   MQ+R   P   TY+ +I  + K G
Sbjct: 527 Q-----------------------------------MQERGLLPNEFTYSGLIHGYLKNG 551

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +E  E+  ++M   G+KPN + Y  L+ +Y K+  I KV S  + + +  V+LD   + 
Sbjct: 552 DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYG 611

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +I     +G++E    +   +++   VPD   ++++I  
Sbjct: 612 ILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 651



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 7/260 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+ S  F+ ML  G+     +Y  L+     SG ++ AF  ++ ++  +   PDV+ YS 
Sbjct: 589 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK-NGSVPDVHVYSS 647

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K    +    IL EMS  G++ + V YN +IDG  K+       + F++++ + 
Sbjct: 648 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AK 706

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+  T  S+I      G+I      YNE    G+  D    ++LT     AG    +
Sbjct: 707 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG---DL 763

Query: 311 RSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              M  +++ F     ++ ++N +++ F K G +++  +    +  RG+ PN++T  +++
Sbjct: 764 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 823

Query: 369 SAYSKAGLIMKVDSILRQVE 388
           S  S+AG + +V +I  +++
Sbjct: 824 SGLSEAGKLSEVHTIFVELQ 843



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 80/160 (50%)

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           ++Y +   +D  + V+  M++R      VTYN++I    ++G +E+   + K M+  G+ 
Sbjct: 230 EAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLV 289

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY +L++   K+    +  ++L ++  +++  +   +  +I  + + G+ ++  ++
Sbjct: 290 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 349

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              M      P+ IT+  +++    +G  + A  L  +M+
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 389



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/182 (18%), Positives = 73/182 (40%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            S + AY      +  +K   E    G   +  T N+L     R+G  ++       M+ 
Sbjct: 226 GSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMED 285

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P   TY  +I    K+    + +    +M    +KPN + Y +L+  + + G   +
Sbjct: 286 YGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADE 345

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +++++  + V  +   ++ ++    + G +++   L   M      PD IT+  +I+
Sbjct: 346 AFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 405

Query: 440 AY 441
            +
Sbjct: 406 GH 407


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 5/361 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +T ++  L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + +
Sbjct: 90  RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE 149

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               +  +PD +T S +I +C +    D       ++   G     VTYN ++  +GKA 
Sbjct: 150 EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG 209

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E       M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T 
Sbjct: 210 NYTEALRVLKEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 268

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+  ++ D M+K  + P V TYN++    GK      M E  ++M  
Sbjct: 269 NTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSR 328

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +T+ ++++   K G+   V  +L  +++  V L    +N +ISAYG+ G    
Sbjct: 329 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTY 388

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN--SGKKLIQ 470
             +++  M      P   T+  ++   +  G    AQ++ +KM+    K N  S   L+Q
Sbjct: 389 AFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 448

Query: 471 C 471
           C
Sbjct: 449 C 449



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 147/303 (48%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +V A G+ G  D     +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 59  VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQ 118

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A G  G +++
Sbjct: 119 GVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQ 178

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              ++ +    G    + T N L + +G+AG Y +   V+  M+     P  VTYN +  
Sbjct: 179 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 238

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY+  G + +  ++  +++ +  + 
Sbjct: 239 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 298

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   +N I    G+      M E+   M    C P+ +T+ TM+      GM +    + 
Sbjct: 299 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 358

Query: 455 NKM 457
           N M
Sbjct: 359 NGM 361



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 178/384 (46%), Gaps = 37/384 (9%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T+ +L     +    E+A+   + M S GL P+   Y  +++AY   G +DEA +
Sbjct: 227 QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALA 286

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             + MK  +   P+V TY+++     K  RF  + ++L EMS  G   + VT+NT++   
Sbjct: 287 LFDRMKK-NGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVC 345

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK +  E+  +     ++S G      T N++ISAYG  G+     K Y+E    G    
Sbjct: 346 GK-RGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPC 404

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--------- 341
           + T N L     R G +   +S++  M K  F P   +Y+++++ + K G+         
Sbjct: 405 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK 464

Query: 342 --------------------------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                                     +E +E+ F+++K +G KP+ + + S+++ Y+K G
Sbjct: 465 EVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNG 524

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           L  K   +   ++ S +  D   +N ++  Y ++ +  +  ++   +K     PD +++ 
Sbjct: 525 LYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYN 584

Query: 436 TMIQAYNALGMTEAAQNLENKMIA 459
           T+I  +   G+ + AQ + ++MIA
Sbjct: 585 TVINGFCKQGLIKEAQRILSEMIA 608



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 72/414 (17%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +I  LL + +        FT   V+   G+    +QA   FE + + G  P V  Y AL+
Sbjct: 143 RIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 202

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             +G++G   EA   + +M+  S C+PD  TY+ L  +  +   F+   K L  M+  G+
Sbjct: 203 QVFGKAGNYTEALRVLKEMED-SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 261

Query: 217 ECSAVTYNTIIDGYGKAKKFEEM----------------------------ESSFSAMVE 248
             +  TYNT++  Y    + +E                             +S F+AM+E
Sbjct: 262 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 321

Query: 249 ------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC P+  T N+M++  G  G  + + +  N     GV+    T N L  +YG
Sbjct: 322 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYG 381

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G       + D M    F P + TYN ++    + G     +    KM   G KPN  
Sbjct: 382 RCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 441

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVIL----------------------- 394
           +Y  L+  Y+K G    ++SI ++V       S VIL                       
Sbjct: 442 SYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEV 501

Query: 395 -------DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                  D   FN +++ Y + G   K  E+F ++K+    PD IT+ +++  Y
Sbjct: 502 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMY 555



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 132/315 (41%), Gaps = 37/315 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G+C     A  +++ M+S G  P +  Y AL++   + G    A S ++ M
Sbjct: 372 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 431

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  KP+  +YS+L++   K      IE I  E+    I  S V   T++    K ++
Sbjct: 432 LK-NGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRR 490

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E +E +F   V++ G  PD+   NSM++ Y  +G   K  + ++     G+  D+ T N
Sbjct: 491 LEGVEKAFQE-VKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYN 549

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME--------- 346
            L   Y ++    +   ++  ++     P VV+YN VI  F K G I++ +         
Sbjct: 550 SLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIAD 609

Query: 347 --------------------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                     E    M H  +KP  +TY  +V +Y KA    + 
Sbjct: 610 GMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEA 669

Query: 381 DSILRQVENSDVILD 395
              L ++ ++D   D
Sbjct: 670 REFLSEISDTDQNFD 684



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           + Q Y+     F  ++ M  K     +A+ +F+ +   GL P +  Y +L+  Y +S   
Sbjct: 502 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNES 561

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA   +  +KS S  KPDV +Y+ +I    K       ++IL+EM   G+    VTY+T
Sbjct: 562 WEAEKILKQLKS-SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHT 620

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           ++ GY   + F E     + M+      P   T   ++ +Y  +   ++  ++ +E +
Sbjct: 621 LVGGYASLEMFNEAREVVNYMIHH-NLKPMELTYRRVVDSYCKAKRYDEAREFLSEIS 677


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 4/352 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG  +  + Y      FT   ++ G CK  +  +A  L + M    LKP+V VY  L+  
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 231

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G  DEAF  I +M + +  +P+  TY  L++   K  + D    +L +M       
Sbjct: 232 FMREGNADEAFKMIKEMVA-AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             +TYN II+G+ +    ++     S M E+ G  P+++T + MI     SG  EK    
Sbjct: 291 DTITYNLIIEGHFRHHNKKDAFRLLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    G+K +      L   Y R G       + D M K    P +  YN +I    K
Sbjct: 350 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 409

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +E+  +YF +M+ RG+ PN  TY  L+  Y K G +   + +++++ ++ +  +   
Sbjct: 410 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 469

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +  ++ +Y ++ D+EK+   F +M ++  + DN  +  +I   ++ G  EAA
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAA 521



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 159/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K ++ + A  +   M   G   +   Y  L++   +SG ++EAF    DM
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PD +TY  LI    K  R +  + +L EMS   ++ + V Y  +IDG+ +   
Sbjct: 179 EDYG-LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 237

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       MV + G  P+  T ++++      G +++      +      + D  T N
Sbjct: 238 ADEAFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 296

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ + + R         ++  M+     P V TY+I+I    ++G  EK  +  ++M  +
Sbjct: 297 LIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 356

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN+  Y  L+S Y + G +     I  ++   +V+ D   +N +I    + G VE+ 
Sbjct: 357 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 416

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            + F  M+ER  +P+  T++ +I  Y   G  E+A+ L  +M+
Sbjct: 417 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 4/359 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +        +T  +++ G C+  +PE+AS L E M + GLKP+  VY  L+S 
Sbjct: 312 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 371

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G +  A    + M  V +  PD+Y Y+ LI   +K  R +   K  A+M   G+  
Sbjct: 372 YCREGNVSLACEIFDKMTKV-NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 430

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +  TY+ +I GY K    E  E     M+++G    D+  ++ ++ +Y  S +IEK+   
Sbjct: 431 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID-LLESYFKSDDIEKVSST 489

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +      GV  D +   IL  +   +G  +    V+  ++K    P V  Y+ +I    K
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               EK      +M  +G+ PN + Y +L+    K+G I    ++   +    ++ +   
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 609

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +I    + GD+     L+  M      PD   ++ +    ++ G  E A  L  +M
Sbjct: 610 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 171/400 (42%), Gaps = 50/400 (12%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEA-LDEAIKQKKWQLALKI 100
           G+ K    + +K L  E +   ++  V    Y NL    + E   DEA K  K  +A  +
Sbjct: 196 GLCKSRRSNEAKALLDEMSCAELKPNVVV--YANLIDGFMREGNADEAFKMIKEMVAAGV 253

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
                     Q    T+  L+  L K  Q ++ASLL + M+ D  +P    Y  ++  + 
Sbjct: 254 ----------QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHF 303

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           +     +AF  +++M++ +   P+VYTYSI+I    +    +    +L EM+  G++ +A
Sbjct: 304 RHHNKKDAFRLLSEMEN-AGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 362

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             Y  +I GY +          F  M +     PD++  NS+I      G +E+  K++ 
Sbjct: 363 FVYAPLISGYCREGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFA 421

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +                                   MQ+R   P   TY+ +I  + K G
Sbjct: 422 Q-----------------------------------MQERGLLPNEFTYSGLIHGYLKNG 446

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +E  E+  ++M   G+KPN + Y  L+ +Y K+  I KV S  + + +  V+LD   + 
Sbjct: 447 DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYG 506

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +I     +G++E    +   +++   VPD   ++++I  
Sbjct: 507 ILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISG 546



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 129/265 (48%), Gaps = 7/265 (2%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K    E+ S  F+ ML  G+     +Y  L+     SG ++ AF  +++++  +   PDV
Sbjct: 479 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK-NGSVPDV 537

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           + YS LI    K    +    IL EMS  G++ + V YN +IDG  K+       + F++
Sbjct: 538 HVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNS 597

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           ++ + G  P+  T  S+I      G+I      YNE    G+  D    ++LT     AG
Sbjct: 598 IL-AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG 656

Query: 306 MYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               +   M  +++ F     ++ ++N +++ F K G +++  +    +  RG+ PN++T
Sbjct: 657 ---DLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 713

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVE 388
             +++S  S+AG + +V +I  +++
Sbjct: 714 IENIISGLSEAGKLSEVHTIFVELQ 738



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 112/240 (46%), Gaps = 1/240 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S    + ++D Y K+ + ++  +    M+   G  P I   N+++     +  +  + K 
Sbjct: 46  SPAVLDVLVDTYKKSGRVQD-AAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKV 104

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                  G+  D+ T + L ++Y +   +D  + V+  M++R      VTYN++I    +
Sbjct: 105 REFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCR 164

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           +G +E+   + K M+  G+ P+  TY +L++   K+    +  ++L ++  +++  +   
Sbjct: 165 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 224

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +I  + + G+ ++  ++   M      P+ IT+  +++    +G  + A  L  +M+
Sbjct: 225 YANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 284



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
           + S   A+ +SG   P +  L+ ++  Y  SG ++   +        G+   I+  N L 
Sbjct: 32  LASIHRALSDSGHRSPAV--LDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALL 89

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           K   RA     +  V +FM      P V TY+ +IE + K    +  ++   +M+ RG  
Sbjct: 90  KDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCG 149

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            N++TY  L++   ++G + +     + +E+  ++ D   +  +I+   ++    +   L
Sbjct: 150 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 209

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              M      P+ + +A +I  +   G  + A  +  +M+A
Sbjct: 210 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 250



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/193 (19%), Positives = 81/193 (41%)

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
             G  PD++T +++I AY      +  +K   E    G   +  T N+L     R+G  +
Sbjct: 110 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVE 169

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           +       M+     P   TY  +I    K+    + +    +M    +KPN + Y +L+
Sbjct: 170 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 229

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             + + G   +   +++++  + V  +   ++ ++    + G +++   L   M      
Sbjct: 230 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR 289

Query: 429 PDNITFATMIQAY 441
           PD IT+  +I+ +
Sbjct: 290 PDTITYNLIIEGH 302


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 176/379 (46%), Gaps = 16/379 (4%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLF 137
           PVL  +    K  +  LA++   LLR+ +    +       +++ G CK    + A  LF
Sbjct: 233 PVLNVM---CKSGQTALAME---LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF 286

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSC 195
             M   G K  +  Y  L+  +  +G  D+    + DM  + +S   P+V T+S+LI S 
Sbjct: 287 NEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS---PNVVTFSVLIDSF 343

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  +    +++L EM   GI  + +TYN++IDG+ K  + EE       M+ S GC PD
Sbjct: 344 VKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI-SKGCDPD 402

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I T N +I+ Y  +  I+   + + E +L GV A+  T N L + + ++G  +  + +  
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQ 462

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  R   P +V+Y I+++     G +EK  E F K++   M+ +   Y  ++     A 
Sbjct: 463 EMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNAS 522

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +     +   +    V LD   +N +IS   +   + K   LF  M E    PD +T+ 
Sbjct: 523 KVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYN 582

Query: 436 TMIQAYNALGMTEAAQNLE 454
            +I+A+  LG  +A    E
Sbjct: 583 ILIRAH--LGDDDATTAAE 599



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 155/332 (46%), Gaps = 3/332 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           +C+  E   L+ + M+  G KP++     LV+    +G + +A   I+ M   +  +P+ 
Sbjct: 171 ECRVSEALELV-DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE-TGFQPNE 228

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY  ++    K  +  L  ++L +M    I+  AV Y+ IIDG  K    +   + F+ 
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M E  G   DI T N++I  + N+G  +   K   +     +  ++ T ++L  S+ + G
Sbjct: 289 M-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +   ++  M +R   P  +TYN +I+ F K   +E+  +    M  +G  P+ +T+ 
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L++ Y KA  I     + R++    VI +T  +N ++  + Q+G +E   +LF  M  R
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              PD +++  ++      G  E A  +  K+
Sbjct: 468 RVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 131/303 (43%), Gaps = 10/303 (3%)

Query: 162 SGLL----DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
           SGL+    D+A     DM   S   P V  ++ L  +  K  +++L+  +  +M   GI 
Sbjct: 62  SGLVGIKADDAVDLFRDMIQ-SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIA 120

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKM 275
            S  T + +I+ + + +K   +  +FS M  +   G  PD    N++++       + + 
Sbjct: 121 HSIYTLSIMINCFCRCRK---LSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEA 177

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            +  +    MG K  + TLN L       G       ++D M +  F P  VTY  V+  
Sbjct: 178 LELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV 237

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K+G      E  +KM+ R +K +++ Y  ++    K G +    ++  ++E      D
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +N +I  +  AG  +   +L   M +R   P+ +TF+ +I ++   G    A  L  
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357

Query: 456 KMI 458
           +M+
Sbjct: 358 EMM 360



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 1/243 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + + +N +     K K++E +  +    +ES G    I+TL+ MI+ +     +      
Sbjct: 87  TVIDFNRLFSAIAKTKQYE-LVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + D    N L           +   ++D M +    PT++T N ++     
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +        +M   G +PN +TY  +++   K+G       +LR++E  ++ LD   
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++ II    + G ++    LF  M+ +    D IT+ T+I  +   G  +    L   MI
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 459 AMK 461
             K
Sbjct: 326 KRK 328



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 4/197 (2%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           L R+         T T   ++ G C+  + E A  LF+ M+S  ++P +  Y  L+    
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G L++A      ++  S  + D+  Y I+I       + D    +   +   G++  A
Sbjct: 485 DNGELEKALEIFGKIEK-SKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDA 543

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             YN +I    +     + +  F  M E G   PD  T N +I A+    +     +   
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGH-APDELTYNILIRAHLGDDDATTAAELIE 602

Query: 281 EFNLMGVKADIQTLNIL 297
           E    G  AD+ T+ ++
Sbjct: 603 EMKSSGFPADVSTVKMV 619


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 172/361 (47%), Gaps = 2/361 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+++F  ++     Q   + +T L+ +  K  + E+A  LFE M   G  P+V  YT L+
Sbjct: 252 AIRLFDEMKDN-CMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
              G++G +DEA+    DM       PDV   + L+    K  R + +  + +EM     
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLR-DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + V+YNT+I    ++K      SS+   +++    P  FT + +I  Y  +  +EK  
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E +  G          L  + G+A  Y+    +   +++ F   +   Y ++I+ F
Sbjct: 430 LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHF 489

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           GK G + +  + F +MK++G  P+   Y +L+S   KAG+I + +S+LR++E +    D 
Sbjct: 490 GKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADI 549

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
              N I++ + + G   +  E+F T+K     PD +T+ T++  +   GM E A  +  +
Sbjct: 550 NSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE 609

Query: 457 M 457
           M
Sbjct: 610 M 610



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
             ++L+  LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +  DC PD  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGK 283

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M +  GC P ++T   +I   G +G +++   +Y +    G+  D+  LN
Sbjct: 284 VEKALDLFEEM-KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLN 342

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 354
            L    G+ G  +++ +V   M      PTVV+YN VI+  F    H+ ++  +F KMK 
Sbjct: 343 NLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA 402

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             + P+  TY  L+  Y K   + K   +L +++          +  +I+A G+A   E 
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ELF  +KE      +  +A MI+ +   G    A +L N+M
Sbjct: 463 ADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 166/366 (45%), Gaps = 50/366 (13%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  K + AL +F     ++  +A C     T+T+L+  LGK  + ++A   ++ ML DGL
Sbjct: 280 KVGKVEKALDLF-----EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGL 334

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-------------------- 185
            P V     L++  G+ G ++E  +  ++M  +  C P V                    
Sbjct: 335 TPDVVFLNNLMNILGKVGRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEV 393

Query: 186 ----------------YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                           +TYSILI    K +R +    +L EM   G       Y ++I+ 
Sbjct: 394 SSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453

Query: 230 YGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            GKAK++E  +  F  + E+ G     ++ +  MI  +G  G + +    +NE    G  
Sbjct: 454 LGKAKRYEAADELFKELKENFGNVSSRVYAV--MIKHFGKCGKLSEAVDLFNEMKNQGSG 511

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+   N L     +AGM ++  S++  M++      + ++NI++  F + G   +  E 
Sbjct: 512 PDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEM 571

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F+ +KH G+KP+ +TY +L+  ++ AG+  +   ++R++++     D   ++ I+ A G 
Sbjct: 572 FETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGN 631

Query: 409 AGDVEK 414
             D EK
Sbjct: 632 V-DHEK 636



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 7/261 (2%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           D  TY  LI+   +   +  + + + E+   +Y+ +  S    + ++   G+AK   +  
Sbjct: 125 DCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSV--SPAVLSELVKALGRAKMVSKAL 182

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 299
           S F    +   C P   T NS+I      G  EK+ + Y E  N      D  T + L  
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           SY + G  D    + D M+     PT   Y  ++  + K G +EK  + F++MK  G  P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
              TY  L+    KAG + +     + +    +  D  F N +++  G+ G VE++  +F
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361

Query: 420 LTMKERHCVPDNITFATMIQA 440
             M    C P  +++ T+I+A
Sbjct: 362 SEMGMWRCTPTVVSYNTVIKA 382



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            L+ L K+ GRA M  K  SV    + R   PT  TYN VI    + G  EK+ E + +M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query: 353 KHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQ 408
            + G   P++ITY +L+S+Y K G   + DS +R   +++++ +      +  ++  Y +
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G VEK  +LF  MK   C P   T+  +I+     G  + A      M+
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 35/188 (18%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K+++ A ++F  L++  +     + +  ++   GKC +  +A  LF  M + G  P V
Sbjct: 456 KAKRYEAADELFKELKEN-FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDV 514

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------------- 177
             Y AL+S   ++G+++EA S +  M+                                 
Sbjct: 515 YAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFET 574

Query: 178 --VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S  KPD  TY+ L+        F+   +++ EM   G E  A+TY++I+D  G    
Sbjct: 575 IKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDH 634

Query: 236 FEEMESSF 243
            ++  SSF
Sbjct: 635 EKDDVSSF 642


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 5/361 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +T ++  L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + +
Sbjct: 181 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE 240

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               +  +PD +T S +I +C +    D       ++   G     VTYN ++  +GKA 
Sbjct: 241 EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG 300

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E       M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T 
Sbjct: 301 NYTEALRVLKEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+  ++ D M+K  + P V TYN++    GK      M E  ++M  
Sbjct: 360 NTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSR 419

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +T+ ++++   K G+   V  +L  +++  V L    +N +ISAYG+ G    
Sbjct: 420 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTY 479

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN--SGKKLIQ 470
             +++  M      P   T+  ++   +  G    AQ++ +KM+    K N  S   L+Q
Sbjct: 480 AFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 471 C 471
           C
Sbjct: 540 C 540



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 147/303 (48%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +V A G+ G  D     +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 150 VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQ 209

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A G  G +++
Sbjct: 210 GVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQ 269

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              ++ +    G    + T N L + +G+AG Y +   V+  M+     P  VTYN +  
Sbjct: 270 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY+  G + +  ++  +++ +  + 
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   +N I    G+      M E+   M    C P+ +T+ TM+      GM +    + 
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 455 NKM 457
           N M
Sbjct: 450 NGM 452



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 178/384 (46%), Gaps = 37/384 (9%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T+ +L     +    E+A+   + M S GL P+   Y  +++AY   G +DEA +
Sbjct: 318 QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALA 377

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             + MK  +   P+V TY+++     K  RF  + ++L EMS  G   + VT+NT++   
Sbjct: 378 LFDRMKK-NGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVC 436

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK +  E+  +     ++S G      T N++ISAYG  G+     K Y+E    G    
Sbjct: 437 GK-RGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPC 495

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--------- 341
           + T N L     R G +   +S++  M K  F P   +Y+++++ + K G+         
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK 555

Query: 342 --------------------------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                                     +E +E+ F+++K +G KP+ + + S+++ Y+K G
Sbjct: 556 EVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNG 615

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           L  K   +   ++ S +  D   +N ++  Y ++ +  +  ++   +K     PD +++ 
Sbjct: 616 LYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYN 675

Query: 436 TMIQAYNALGMTEAAQNLENKMIA 459
           T+I  +   G+ + AQ + ++MIA
Sbjct: 676 TVINGFCKQGLIKEAQRILSEMIA 699



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 72/414 (17%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +I  LL + +        FT   V+   G+    +QA   FE + + G  P V  Y AL+
Sbjct: 234 RIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 293

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             +G++G   EA   + +M+  S C+PD  TY+ L  +  +   F+   K L  M+  G+
Sbjct: 294 QVFGKAGNYTEALRVLKEMED-SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 217 ECSAVTYNTIIDGYGKAKKFEEM----------------------------ESSFSAMVE 248
             +  TYNT++  Y    + +E                             +S F+AM+E
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 412

Query: 249 ------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC P+  T N+M++  G  G  + + +  N     GV+    T N L  +YG
Sbjct: 413 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYG 472

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G       + D M    F P + TYN ++    + G     +    KM   G KPN  
Sbjct: 473 RCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 532

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVIL----------------------- 394
           +Y  L+  Y+K G    ++SI ++V       S VIL                       
Sbjct: 533 SYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEV 592

Query: 395 -------DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                  D   FN +++ Y + G   K  E+F ++K+    PD IT+ +++  Y
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMY 646



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 132/315 (41%), Gaps = 37/315 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G+C     A  +++ M+S G  P +  Y AL++   + G    A S ++ M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  KP+  +YS+L++   K      IE I  E+    I  S V   T++    K ++
Sbjct: 523 LK-NGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRR 581

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E +E +F   V++ G  PD+   NSM++ Y  +G   K  + ++     G+  D+ T N
Sbjct: 582 LEGVEKAFQE-VKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYN 640

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME--------- 346
            L   Y ++    +   ++  ++     P VV+YN VI  F K G I++ +         
Sbjct: 641 SLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIAD 700

Query: 347 --------------------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                     E    M H  +KP  +TY  +V +Y KA    + 
Sbjct: 701 GMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEA 760

Query: 381 DSILRQVENSDVILD 395
              L ++ ++D   D
Sbjct: 761 REFLSEISDTDQNFD 775



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           + Q Y+     F  ++ M  K     +A+ +F+ +   GL P +  Y +L+  Y +S   
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNES 652

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA   +  +KS S  KPDV +Y+ +I    K       ++IL+EM   G+    VTY+T
Sbjct: 653 WEAEKILKQLKS-SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHT 711

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           ++ GY   + F E     + M+      P   T   ++ +Y  +   ++  ++ +E +
Sbjct: 712 LVGGYASLEMFNEAREVVNYMIHH-NLKPMELTYRRVVDSYCKAKRYDEAREFLSEIS 768


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 140/276 (50%), Gaps = 2/276 (0%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +A+  F  L++Q  +     T+T ++ +LG+ ++    + L E M+ DG +P+V  Y  L
Sbjct: 365 VAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRL 424

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + +YG++  L EA +  N M+ +  C+PD  TY  LI    K    D+   +   M  +G
Sbjct: 425 IHSYGRANYLREALNVFNQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVG 483

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +I+  GK+         F  MV+ G C P+I T N +I+    + N +  
Sbjct: 484 LSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQG-CVPNIVTYNILIALQAKARNYQTA 542

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + Y +    G K D  T +I+ +  G  G  ++  +V   M++  + P    Y ++++ 
Sbjct: 543 LELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDL 602

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +GKAG++EK  E++  M   G+ PN  T  SL+SA+
Sbjct: 603 WGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAF 638



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 1/280 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +TY+ ++    +   F  I K+L +M   G + + VTYN +I  YG+A    E  + F
Sbjct: 382 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVF 441

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           + M E G C PD  T  ++I  +  +G ++     Y     +G+  D  T +++    G+
Sbjct: 442 NQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGK 500

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G       +   M  +   P +VTYNI+I    KA + +   E ++ M++ G KP+ +T
Sbjct: 501 SGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVT 560

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  ++      G + + +++  ++  +  + D P +  ++  +G+AG+VEK  E + TM 
Sbjct: 561 YSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTML 620

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
               +P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 621 RAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLN 660



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 143/321 (44%), Gaps = 18/321 (5%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + +Q AL+++  + Q   ++    T++ +M +LG C   E+A  +F  M  +   P  
Sbjct: 535 KARNYQTALELYRDM-QNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDE 593

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  LV  +G++G +++A+   + M   +   P+V T + L+ +  + HR      +L 
Sbjct: 594 PVYGLLVDLWGKAGNVEKAWEWYHTMLR-AGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQ 652

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M  LG+  S  TY  ++    +A+   +M      M  SG  HP    L SM +A  + 
Sbjct: 653 NMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGFCCELMAVSG--HPAHAFLQSMPAAGPDG 710

Query: 270 GNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            N+ + + K+ +  +    +     ++ +     ++G+ ++  SV +   ++  +P  V 
Sbjct: 711 QNVRDHVSKFLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVK 770

Query: 329 --------YNIVIETFGKA-GHIEKMEEYFKK-MKHRGMKPNSITYCSLVSAYSKAGLIM 378
                    N+ + + G A   + +   +F++ M   G+ PN I    +V+ + +   + 
Sbjct: 771 EKSTCYWLINLHVMSDGTAVTALSRTLAWFRRQMLASGVGPNRI---DIVTGWGRRSRVT 827

Query: 379 KVDSILRQVENSDVILDTPFF 399
               + + V+    +   PFF
Sbjct: 828 GSSLVRQAVQELLHVFSFPFF 848


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 5/361 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +T ++  L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + +
Sbjct: 181 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE 240

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
               +  +PD +T S +I +C +    D       ++   G     VTYN ++  +GKA 
Sbjct: 241 EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG 300

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            + E       M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T 
Sbjct: 301 NYTEALRVLKEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y   G  D+  ++ D M+K  + P V TYN++    GK      M E  ++M  
Sbjct: 360 NTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSR 419

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +T+ ++++   K G+   V  +L  +++  V L    +N +ISAYG+ G    
Sbjct: 420 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTY 479

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN--SGKKLIQ 470
             +++  M      P   T+  ++   +  G    AQ++ +KM+    K N  S   L+Q
Sbjct: 480 AFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 471 C 471
           C
Sbjct: 540 C 540



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 147/303 (48%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +V A G+ G  D     +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 150 VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQ 209

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A G  G +++
Sbjct: 210 GVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQ 269

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              ++ +    G    + T N L + +G+AG Y +   V+  M+     P  VTYN +  
Sbjct: 270 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY+  G + +  ++  +++ +  + 
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   +N I    G+      M E+   M    C P+ +T+ TM+      GM +    + 
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 455 NKM 457
           N M
Sbjct: 450 NGM 452



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 178/384 (46%), Gaps = 37/384 (9%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T+ +L     +    E+A+   + M S GL P+   Y  +++AY   G +DEA +
Sbjct: 318 QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALA 377

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             + MK  +   P+V TY+++     K  RF  + ++L EMS  G   + VT+NT++   
Sbjct: 378 LFDRMKK-NGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVC 436

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK +  E+  +     ++S G      T N++ISAYG  G+     K Y+E    G    
Sbjct: 437 GK-RGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPC 495

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--------- 341
           + T N L     R G +   +S++  M K  F P   +Y+++++ + K G+         
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK 555

Query: 342 --------------------------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                                     +E +E+ F+++K +G KP+ + + S+++ Y+K G
Sbjct: 556 EVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNG 615

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           L  K   +   ++ S +  D   +N ++  Y ++ +  +  ++   +K     PD +++ 
Sbjct: 616 LYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYN 675

Query: 436 TMIQAYNALGMTEAAQNLENKMIA 459
           T+I  +   G+ + AQ + ++MIA
Sbjct: 676 TVINGFCKQGLIKEAQRILSEMIA 699



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 72/414 (17%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +I  LL + +        FT   V+   G+    +QA   FE + + G  P V  Y AL+
Sbjct: 234 RIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 293

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             +G++G   EA   + +M+  S C+PD  TY+ L  +  +   F+   K L  M+  G+
Sbjct: 294 QVFGKAGNYTEALRVLKEMED-SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 217 ECSAVTYNTIIDGYGKAKKFEEM----------------------------ESSFSAMVE 248
             +  TYNT++  Y    + +E                             +S F+AM+E
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 412

Query: 249 ------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC P+  T N+M++  G  G  + + +  N     GV+    T N L  +YG
Sbjct: 413 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYG 472

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G       + D M    F P + TYN ++    + G     +    KM   G KPN  
Sbjct: 473 RCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 532

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVIL----------------------- 394
           +Y  L+  Y+K G    ++SI ++V       S VIL                       
Sbjct: 533 SYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEV 592

Query: 395 -------DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                  D   FN +++ Y + G   K  E+F ++K+    PD IT+ +++  Y
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMY 646



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 132/315 (41%), Gaps = 37/315 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G+C     A  +++ M+S G  P +  Y AL++   + G    A S ++ M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  KP+  +YS+L++   K      IE I  E+    I  S V   T++    K ++
Sbjct: 523 LK-NGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRR 581

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E +E +F   V++ G  PD+   NSM++ Y  +G   K  + ++     G+  D+ T N
Sbjct: 582 LEGVEKAFQE-VKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYN 640

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME--------- 346
            L   Y ++    +   ++  ++     P VV+YN VI  F K G I++ +         
Sbjct: 641 SLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIAD 700

Query: 347 --------------------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                     E    M H  +KP  +TY  +V +Y KA    + 
Sbjct: 701 GMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEA 760

Query: 381 DSILRQVENSDVILD 395
              L ++ ++D   D
Sbjct: 761 REFLSEISDTDQNFD 775



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           + Q Y+     F  ++ M  K     +A+ +F+ +   GL P +  Y +L+  Y +S   
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNES 652

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA   +  +KS S  KPDV +Y+ +I    K       ++IL+EM   G+    VTY+T
Sbjct: 653 WEAEKILKQLKS-SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHT 711

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           ++ GY   + F E     + M+      P   T   ++ +Y  +   ++  ++ +E +
Sbjct: 712 LVGGYASLEMFNEAREVVNYMIHH-NLKPMELTYRRVVDSYCKAKRYDEAREFLSEIS 768


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 130 PEQASLLFEVML--SDGLKPSV---DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-- 182
           P+ A  LF+ +L   D   P+    ++ +AL  A   +   D     +   K +  C   
Sbjct: 124 PDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACP 183

Query: 183 ---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              P +YTY+ILI    +  R DL   +   +   G+     +YN +IDG+ K  + ++ 
Sbjct: 184 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 243

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M E  G  P++ T +S+I+    +  ++K E+   +    GV+ +  T N L  
Sbjct: 244 HDLFYKM-EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 302

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y  +GM+ +   V   M      P V   N  +    K G I++  + F  M  +G KP
Sbjct: 303 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 362

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + I+Y +L+  Y+ AG I  +D++   +    V+ D   FN +I+AY + G ++K   +F
Sbjct: 363 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 422

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M ++   PD ITF+T+I A+  LG  + A    N MI
Sbjct: 423 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 147/323 (45%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    + ++P+    +F  +L  GL P V  Y AL+  + + G +D+A      M
Sbjct: 191 TYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 250

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P+V TYS LI    K    D  E++L +M   G+  + +TYN +I GY  +  
Sbjct: 251 EE-QGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 309

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E    F  M  S    PD+   NS ++A    G I++    ++   L G K D+ +  
Sbjct: 310 WKESVRVFKEM-SSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYG 368

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y  AG    M ++ + M      P    +N +I  + + G ++K    F+ M  +
Sbjct: 369 ALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ 428

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ IT+ +++SA+ + G +         + ++ V  DT  ++C+I       D+ K 
Sbjct: 429 GVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA 488

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            EL   M  +   P  I F T I
Sbjct: 489 KELISDMLSKGIPPPCIKFFTSI 511



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 162/347 (46%), Gaps = 9/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    +    +++ L+FE M   G+ P +  ++ ++SA+ + G LD+A    N 
Sbjct: 400 HVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNH 459

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNT-IIDGYG 231
           M   +   PD   YS LI+   + +R DL++  +++++M   GI    + + T II+   
Sbjct: 460 MID-TGVPPDTAVYSCLIQG--QCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 516

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  +  E +     ++ +G   P++ T NS++  Y   GN+++     +    +GV+ DI
Sbjct: 517 KEGRVAEGKDVVDLIIHTGQ-RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDI 575

Query: 292 QTLNILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
            T N L   Y + G  D   ++  D + KR    T V+YNI++    +A      +E F 
Sbjct: 576 YTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTL-TSVSYNIILHGLFQARRTIVAKEMFH 634

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M   GM  +  TY +++    +     + + +L ++ + +V  D   FN +I A  + G
Sbjct: 635 EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 694

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ++  ELF  +     VP  +T+  MI         E A NL + M
Sbjct: 695 RRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 741



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 150/338 (44%), Gaps = 27/338 (7%)

Query: 111 QARCQTFTKLMVML----GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
            A C+    L V L     +C  PE A             P++  Y  L++ Y ++   D
Sbjct: 160 SAACRDVPALAVELFKRMDRCACPEAA-------------PTIYTYNILINCYRRARRPD 206

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
                   +   +   PDV++Y+ LI   +K    D    +  +M   GI  + VTY+++
Sbjct: 207 LGLPVFGRLLR-TGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSL 265

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+G  K K+ ++ E     MV   G  P+  T N +I  Y  SG  ++  + + E +   
Sbjct: 266 INGLCKTKEMDKAERVLRQMV-GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL 324

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  D+   N    +  + G   + R + D M  +   P V++Y  ++  +  AG I  M+
Sbjct: 325 LVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMD 384

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGL----IMKVDSILRQVENSDVILDTPFFNCI 402
             F  M   G+ P+   + +L++AY++ G+    ++  + + +Q  N D+I     F+ +
Sbjct: 385 NLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT----FSTV 440

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ISA+ + G ++   E F  M +    PD   ++ +IQ 
Sbjct: 441 ISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQG 478



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 139/329 (42%), Gaps = 37/329 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           FT ++  L K  +  +   + ++++  G +P++  + +LV  Y   G + EA   ++ M+
Sbjct: 508 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSME 567

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           SV   +PD+YTY+ L+    K  R D    +  +M +  +  ++V+YN I+ G  +A++ 
Sbjct: 568 SVG-VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRT 626

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M+ESG     I T  +++     +   ++      +   M VK DI     
Sbjct: 627 IVAKEMFHEMIESG-MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDI----- 680

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
                                         +T+NIVI    K G  ++ +E F  +   G
Sbjct: 681 ------------------------------LTFNIVIRAMFKVGRRQEAKELFAAISTYG 710

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P  +TY  +++   K       D++   +E S    D+   N II      G+V K G
Sbjct: 711 LVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAG 770

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALG 445
                + ++  +P+  T + +I  ++  G
Sbjct: 771 NYLSKIDKKGILPEATTTSLLIYLFSVNG 799



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  M+  G+  S+  Y  ++    ++   DEA   +  + S+ + K D+ T++I+I++ 
Sbjct: 632 MFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM-NVKFDILTFNIVIRAM 690

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R    +++ A +S  G+  + +TY  +I    K + FE+ ++ FS+M E   C PD
Sbjct: 691 FKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM-EKSSCTPD 749

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
              LN +I    N G + K   + ++ +  G+  +  T ++L   +   G Y   R  + 
Sbjct: 750 SRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY---REYIK 806

Query: 316 FMQKRFFF 323
            + +++ F
Sbjct: 807 LLPEKYRF 814


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 153/346 (44%), Gaps = 41/346 (11%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKF 198
           M    L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K 
Sbjct: 2   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKL 59

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------- 250
             +     I + +   G     V YN +I+ +GKAK F E  S  S M  SG        
Sbjct: 60  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASY 119

Query: 251 --------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
                                      C  D+ T N MI  YG  G  ++ +K +     
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 179

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK
Sbjct: 180 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 239

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I 
Sbjct: 240 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 299

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 300 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 341



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 9   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 68

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 69  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYV 127

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 128 ENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 187

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N +I  YG+  + EK   L   M
Sbjct: 188 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 247

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 248 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 282



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 161/359 (44%), Gaps = 11/359 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M   G+ P+   Y+ L+
Sbjct: 65  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLL 123

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ V  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 124 TMYVENKKFLEALSVFSEMREVK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 182

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 183 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 241

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 242 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 299

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 300 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 355

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++
Sbjct: 356 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLNAYGKLHEFDKANDV 414



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 40/295 (13%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ KK+  AL +F  +R+      +C     T   ++ + G+    ++A  LF  M   G
Sbjct: 127 VENKKFLEALSVFSEMRE-----VKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 181

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P+V  Y  L+  YG + L  EA      M+   + + +V TY+ +I    K    +  
Sbjct: 182 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMIMIYGKTLEHEKA 240

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV-- 247
             ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+  
Sbjct: 241 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 300

Query: 248 -ESGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            E  G              PD    ++ I     +G IE+    + +    G   DI   
Sbjct: 301 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVF 360

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
             +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + +
Sbjct: 361 ERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLNAYGKLHEFDKANDVY 415


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 168/345 (48%), Gaps = 5/345 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    K    + A  L  +M++ G++P+V  Y+AL+    +S    EA   + +M
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 188

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K+ S   PD +TYS LI    K  + +  E++L  M+  G     V Y++II  + K+ K
Sbjct: 189 KA-SGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTL 294
             E + +   M +     PD+ T N++I      G I + +   ++    G V  D+ T 
Sbjct: 248 LLEAQKTLQEMRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTY 306

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           + +     ++ M  + + ++D M K    P VVTY  +I+   K G +E+ E   + MK 
Sbjct: 307 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 366

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  PN +TY +L+S   KA  + + + ++ ++ N+    +   +N +++    +G +++
Sbjct: 367 AGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE 426

Query: 415 MGELFLTMKE--RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +L   MK+    C PD  T+ T++ A  +  + + A+ L  +M
Sbjct: 427 AQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L E M S G  P    +T +++A   +G LD A   +  M     C P+V TY+ LI + 
Sbjct: 12  LLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG----CDPNVVTYTALIAAF 67

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  + +   K+L EM   G   + VTYN ++D   K       +     M+E GG  P+
Sbjct: 68  ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE-GGFAPN 126

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++  +   GN++   K        G++ ++ T + L     ++  + + + V++
Sbjct: 127 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 186

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+     P   TY+ +I    KA  IE+ E+  ++M   G  P+ + Y S++ A+ K+G
Sbjct: 187 EMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 246

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITF 434
            +++    L+++       D   +N +I    + G + +   +   M+E    +PD +T+
Sbjct: 247 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTY 306

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           +T+I       M   AQ L ++M
Sbjct: 307 STVINGLCKSDMLVEAQKLLDRM 329



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 165/377 (43%), Gaps = 36/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    + K+ E+A  L E M   G  P++  Y  LV A  +  ++  A   +  M
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 176 ------------KSVSD--CK--------------------PDVYTYSILIKSCTKFHRF 201
                        S+ D  CK                    P+V TYS LI    K  +F
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
              +++L EM   G+   A TY+ +I G  KA K EE E     M  S GC PD+   +S
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS-GCTPDVVVYSS 237

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I A+  SG + + +K   E        D+ T N +     + G   + + ++D MQ+  
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297

Query: 322 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VVTY+ VI    K+  + + ++   +M   G  P+ +TY +++    K G + + 
Sbjct: 298 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 357

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + +L+ ++ +    +   +  +IS   +A  V++   +   M+   C P+ +T+ TM+  
Sbjct: 358 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 417

Query: 441 YNALGMTEAAQNLENKM 457
               G  + AQ L  +M
Sbjct: 418 LCVSGRIKEAQQLVQRM 434



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 5/296 (1%)

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           +G L  A   + +MKS +   PD +T++ +I +       D     +  +  +G + + V
Sbjct: 3   AGDLHAALELLEEMKS-AGFAPDAFTHTPIITAMANAGDLD---GAMDHLRSMGCDPNVV 58

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I  + +AKK EE       M E G C P++ T N ++ A      +   +    +
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERG-CPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G   ++ T N L   + + G  D  R ++  M  +   P VVTY+ +I+   K+  
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
             + +E  ++MK  G+ P++ TY +L+    KA  I + + +LR++  S    D   ++ 
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           II A+ ++G + +  +    M+++   PD +T+ T+I     LG    AQ + ++M
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQM 293



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG +    E  ++MK  G  P++ T+  +++A + AG    +D  +  + +     +   
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAG---DLDGAMDHLRSMGCDPNVVT 59

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +I+A+ +A  +E+  +L   M+ER C P+ +T+  ++ A   L M  AAQ++  KMI
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 167/347 (48%), Gaps = 7/347 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A++  G++ Q      R  T   ++  LG   +  +A  +FE M  +GLKP    Y  L+
Sbjct: 275 AMEFLGMV-QASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLL 333

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y ++G+L +A   +++M+  S   PD  TYS+LI + +   R++    +L EM    I
Sbjct: 334 KGYVKAGMLKDAEFIVSEMER-SGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNI 392

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEK 274
             ++  ++ I+  Y   +   E + SF  + E  + G  PD    N MI  +G    ++ 
Sbjct: 393 MPNSYVFSRILASY---RDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDH 449

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +++    G++ D  T N L   + +A ++++   + + M ++ F P V T+NI+I 
Sbjct: 450 AMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMIN 509

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
           +FG+    + ++     M+  G+ PN +TY +L+  Y K+G        L  ++++ +  
Sbjct: 510 SFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKP 569

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +  +N +I+AY Q G  E+    F  M+     P  +   ++I A+
Sbjct: 570 SSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAF 616



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 175/346 (50%), Gaps = 13/346 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+  LG+ ++  +A LL +      L P    Y AL++A  ++  L++A + I+ M+
Sbjct: 157 YSILIHALGRSEKLYEAFLLSQ---QQALSPLT--YNALINACARNNDLEKAINLISRMR 211

Query: 177 SVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              D  P D   YS++I+S  + +R D  +++K+ +E+    +E      N II G+ KA
Sbjct: 212 Q--DGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKA 269

Query: 234 -KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               + ME  F  MV++ G  P   TL ++ISA G+SG I + E  + E    G+K   +
Sbjct: 270 GDPNKAME--FLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTR 327

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N L K Y +AGM      ++  M++    P   TY+++I+ +  AG  E      K+M
Sbjct: 328 AYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEM 387

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +   + PNS  +  ++++Y   G   K   +L++++NS V  D  F+N +I  +G+   +
Sbjct: 388 EANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCL 447

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +   + F  M      PD +T+ T+I  +    + E A+ L  +M+
Sbjct: 448 DHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMM 493



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 161/329 (48%), Gaps = 45/329 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+       + E A ++ + M ++ + P+  V++ ++++Y   G   ++F  + +M
Sbjct: 363 TYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEM 422

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           K+ S  +PD + Y+++I +  KF    H  D  +K+L+E    GI+   VT+NT+ID + 
Sbjct: 423 KN-SGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSE----GIQPDTVTWNTLIDCHC 477

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           KA+  E  E  F  M+E G   P + T N MI+++G      + E+W             
Sbjct: 478 KAELHERAEELFEEMMEKG-FSPCVTTFNIMINSFG------EQERW------------- 517

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
                           D ++++M  M+     P VVTY  +I+ +GK+G      E  + 
Sbjct: 518 ----------------DDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLED 561

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G+KP+S  Y +L++AY++ GL  +  +  R +    +       N +I+A+G+   
Sbjct: 562 MKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRR 621

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   +   MKE    PD +T+ T+++A
Sbjct: 622 DAEAFSVLKYMKENDLKPDVVTYTTLMKA 650


>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
          Length = 482

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 169/380 (44%), Gaps = 42/380 (11%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           LE +D  + Q++    + +F  +++Q+WY A    ++KL+ ++G+  Q   A  LF  M 
Sbjct: 78  LEGVD--VDQQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMR 135

Query: 142 SDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
           + G +P   VY +L+  +     +S  L +A      MK++  C+P++            
Sbjct: 136 NSGCRPDTSVYNSLIGTHLHSRDKSKALAKALGYFEKMKTIDRCQPNI------------ 183

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                                  VTYN ++  + +A   ++++  F  + ES    PDI+
Sbjct: 184 -----------------------VTYNILLRAFAQAGDTKQLDILFKDLDESP-VSPDIY 219

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N ++ AYG +G I +ME           + D+ T NIL  SYGR   +DKM  V   +
Sbjct: 220 TYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSL 279

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +    PT  T+N +I  +GKA   EK E    KM   G KPN +T   L+  Y+    +
Sbjct: 280 LRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCV 339

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   I  ++ +S   +     N ++ AY   G   +  +L  ++ ++  VP   T+  +
Sbjct: 340 SRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLL 399

Query: 438 IQAYNALGMTEAAQNLENKM 457
            +AY      +  Q L  +M
Sbjct: 400 YKAYTKANDKKLIQKLLKRM 419



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 31/238 (13%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y+ +I   G+  +       FS M  SG C PD    NS+I  + +S +  K        
Sbjct: 111 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CRPDTSVYNSLIGTHLHSRDKSK-------- 161

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
                         L K+ G    ++KM+++ D  Q     P +VTYNI++  F +AG  
Sbjct: 162 -------------ALAKALG---YFEKMKTI-DRCQ-----PNIVTYNILLRAFAQAGDT 199

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           ++++  FK +    + P+  TY  ++ AY K G+I +++S+L +++++    D   FN +
Sbjct: 200 KQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNIL 259

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           I +YG+    +KM ++F ++      P + TF +MI  Y    + E A+ + +KM  M
Sbjct: 260 IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEM 317


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 167/364 (45%), Gaps = 3/364 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++F L+  Q+  Q    ++T L+  L +  +  +A  LF  M  D   P+V  YT L+
Sbjct: 248 AYEVF-LIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            A   SG   EA +  N+MK    C+P+V+TY++LI    K ++ D   K+L+EMS  G+
Sbjct: 307 YALSGSGRKVEALNLFNEMKE-KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL 365

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S VTYN +IDGY K    ++       M ES  C P+  T N +I        + K  
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLM-ESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
              N+     +   + T N L     +    +    ++  M +    P   TY++ I+T 
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K G +E+    F  +K +G+K N + Y +L+  Y K G I    S+L ++ N   + ++
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I    +   +++   L   M      P  +T+  +I      G  + A  + N 
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604

Query: 457 MIAM 460
           M+++
Sbjct: 605 MVSL 608



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 3/354 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  ++++   +    T+T L+  L K  + ++A  +   M   GL PSV  Y AL+
Sbjct: 318 ALNLFNEMKEKGC-EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y + G++D+AF  ++ M+S S C P+  TY+ LI    K  +      +L +M    +
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNS-CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S +TYN++I G  K    E      S M E+G   PD +T +  I      G +E+  
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV-PDQWTYSVFIDTLCKEGRVEEAG 494

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             ++     GVKA+      L   Y + G  D   S+++ M      P   TYN++IE  
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K   +++      KM   G+KP  +TY  L+    K G       +   + +     D 
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             +   + AY   G +E++ ++   M E   +PD +T+  +I  Y  LG+T  A
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 2/271 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+ +L+  L K ++  +A  L   ML   L PS+  Y +L+    +   L+ A+  ++ 
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M   +   PD +TYS+ I +  K  R +    +   +   G++ + V Y  +IDGY K  
Sbjct: 465 MNE-NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +   S    M+ +  C P+ +T N +I        +++      +   MGVK  + T 
Sbjct: 524 KIDVAYSLLERML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTY 582

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            IL     + G +D    V + M    + P V TY   +  +   G +E++++   KM  
Sbjct: 583 TILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNE 642

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
            G+ P+ +TY  L+  Y++ GL  +    L+
Sbjct: 643 EGILPDLVTYTVLIDGYARLGLTHRAFDFLK 673



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 6/337 (1%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK     +A L    ++  GL P    YT+L+  + ++  +D A+     M     C+
Sbjct: 203 GYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQ-KGCQ 261

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-GKAKKFEEMES 241
            +  +Y+ LI    +  R +   K+ A+M+      +  TY  +I    G  +K E + +
Sbjct: 262 RNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL-N 320

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E  GC P++ T   +I        +++  K  +E +  G+   + T N L   Y
Sbjct: 321 LFNEMKEK-GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGY 379

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + GM D    ++D M+     P   TYN +I    K   + K      KM  R + P+ 
Sbjct: 380 CKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSL 439

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY SL+    K   +     +L  +  + ++ D   ++  I    + G VE+ G LF +
Sbjct: 440 ITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDS 499

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K +    + + +  +I  Y  +G  + A +L  +M+
Sbjct: 500 VKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERML 536



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 163/355 (45%), Gaps = 14/355 (3%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           L   QW      T++  +  L K  + E+A  LF+ + + G+K +  +YTAL+  Y + G
Sbjct: 470 LVPDQW------TYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
            +D A+S +  M +   C P+ YTY++LI+   K  +      ++A+M  +G++ + VTY
Sbjct: 524 KIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTY 582

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
             +I    K   F+     F+ MV S G  PD+ T  + + AY + G +E+++    + N
Sbjct: 583 TILIGEMLKDGAFDHALKVFNHMV-SLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G+  D+ T  +L   Y R G+  +    +  M      P++   +I+I+      H  
Sbjct: 642 EEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS---HEN 698

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +M+E   ++    +  +++    +   +      + +    + VE+   I D   +  +I
Sbjct: 699 RMKETRSEIGIDSV--SNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTI-DVSIYGALI 755

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + + Q   +E+   L   MKER   P    + +++     LG+   A  L + M+
Sbjct: 756 AGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMV 810



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 174/430 (40%), Gaps = 53/430 (12%)

Query: 71  KKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP 130
           K Y ++   P + +LD     +   L+ ++  +L +  W +    +  KL+  L     P
Sbjct: 19  KPYSSIASLPQILSLD----SEPVDLSAQLLSILSRPNWQKH--PSLRKLLPSL----TP 68

Query: 131 EQASLLFE--------------VMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTI 172
              S LF               + L  G K +V  Y+++++   ++ LL  A     S I
Sbjct: 69  SHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMI 128

Query: 173 NDMKSVSDC------------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
               S+ D                   KP +  Y+ ++ S +KF   D ++ +  E+   
Sbjct: 129 KSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNN 188

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I  +  T+N +++GY K     E E   S +V++G  HPD FT  S+I  +  +  ++ 
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAG-LHPDTFTYTSLILGHCRNKGVDN 247

Query: 275 MEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
               Y  F +M   G + +  +   L      AG  ++   +   M +    PTV TY +
Sbjct: 248 A---YEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I     +G   +    F +MK +G +PN  TY  L+    K   + +   +L ++    
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +I     +N +I  Y + G ++   E+   M+   C P+  T+  +I           A 
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 452 NLENKMIAMK 461
            L NKM+  K
Sbjct: 425 ALLNKMLERK 434


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 177
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 178 ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 122

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLE 241

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 301

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +  AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MXVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 132

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/376 (19%), Positives = 156/376 (41%), Gaps = 74/376 (19%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 54  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 113

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 114 T-AGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 172

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---T 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM  K  +Q   T
Sbjct: 173 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVT 228

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 229 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 288

Query: 354 HRGMKPNSITYCSLVSAYSK-------------------------------AGLIMKVDS 382
             G++ + + Y ++  AY +                               AG I +   
Sbjct: 289 SSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATY 348

Query: 383 ILRQVENSDVILDTPFFN-----------------------------------CIISAYG 407
           + RQ  ++  + D   F                                     +++AYG
Sbjct: 349 VFRQAIDAGEVKDITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLNAYG 408

Query: 408 QAGDVEKMGELFLTMK 423
           +  + +K   +++ M+
Sbjct: 409 KLHEFDKANGVYMEMQ 424



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 36/297 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 132 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 188

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   +   +V TY+ ++    K    +    
Sbjct: 189 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIVQNVVTYNSMMMIYGKTLEHEKANN 247

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG--------------- 251
           ++ EM   GIE +++TY+TII  +GK  K +     F  +  SG                
Sbjct: 248 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYE 307

Query: 252 -----CH----------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                 H          PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 308 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 367

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           +   + +   Y  +  V D M+   +FP      +V+  +GK    +K    + +M+
Sbjct: 368 MIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQ 424


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 130 PEQASLLFEVML--SDGLKPSV---DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-- 182
           P+ A  LF+ +L   D   P+    ++ +AL  A   +   D     +   K +  C   
Sbjct: 53  PDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACP 112

Query: 183 ---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              P +YTY+ILI    +  R DL   +   +   G+     +YN +IDG+ K  + ++ 
Sbjct: 113 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 172

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M E  G  P++ T +S+I+    +  ++K E+   +    GV+ +  T N L  
Sbjct: 173 HDLFYKM-EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 231

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y  +GM+ +   V   M      P V   N  +    K G I++  + F  M  +G KP
Sbjct: 232 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 291

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + I+Y +L+  Y+ AG I  +D++   +    V+ D   FN +I+AY + G ++K   +F
Sbjct: 292 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 351

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M ++   PD ITF+T+I A+  LG  + A    N MI
Sbjct: 352 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 390



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 147/323 (45%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    + ++P+    +F  +L  GL P V  Y AL+  + + G +D+A      M
Sbjct: 120 TYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 179

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P+V TYS LI    K    D  E++L +M   G+  + +TYN +I GY  +  
Sbjct: 180 EE-QGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 238

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E    F  M  S    PD+   NS ++A    G I++    ++   L G K D+ +  
Sbjct: 239 WKESVRVFKEM-SSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYG 297

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y  AG    M ++ + M      P    +N +I  + + G ++K    F+ M  +
Sbjct: 298 ALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ 357

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ IT+ +++SA+ + G +         + ++ V  DT  ++C+I       D+ K 
Sbjct: 358 GVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA 417

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            EL   M  +   P  I F T I
Sbjct: 418 KELISDMLSKGIPPPCIKFFTSI 440



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 162/347 (46%), Gaps = 9/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    +    +++ L+FE M   G+ P +  ++ ++SA+ + G LD+A    N 
Sbjct: 329 HVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNH 388

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNT-IIDGYG 231
           M   +   PD   YS LI+   + +R DL++  +++++M   GI    + + T II+   
Sbjct: 389 MID-TGVPPDTAVYSCLIQG--QCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 445

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  +  E +     ++ +G   P++ T NS++  Y   GN+++     +    +GV+ DI
Sbjct: 446 KEGRVAEGKDVVDLIIHTGQ-RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDI 504

Query: 292 QTLNILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
            T N L   Y + G  D   ++  D + KR    T V+YNI++    +A      +E F 
Sbjct: 505 YTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTL-TSVSYNIILHGLFQARRTIVAKEMFH 563

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M   GM  +  TY +++    +     + + +L ++ + +V  D   FN +I A  + G
Sbjct: 564 EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 623

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ++  ELF  +     VP  +T+  MI         E A NL + M
Sbjct: 624 RRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 670



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 150/338 (44%), Gaps = 27/338 (7%)

Query: 111 QARCQTFTKLMVML----GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
            A C+    L V L     +C  PE A             P++  Y  L++ Y ++   D
Sbjct: 89  SAACRDVPALAVELFKRMDRCACPEAA-------------PTIYTYNILINCYRRARRPD 135

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
                   +   +   PDV++Y+ LI   +K    D    +  +M   GI  + VTY+++
Sbjct: 136 LGLPVFGRLLR-TGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSL 194

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+G  K K+ ++ E     MV   G  P+  T N +I  Y  SG  ++  + + E +   
Sbjct: 195 INGLCKTKEMDKAERVLRQMV-GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL 253

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  D+   N    +  + G   + R + D M  +   P V++Y  ++  +  AG I  M+
Sbjct: 254 LVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMD 313

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGL----IMKVDSILRQVENSDVILDTPFFNCI 402
             F  M   G+ P+   + +L++AY++ G+    ++  + + +Q  N D+I     F+ +
Sbjct: 314 NLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT----FSTV 369

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ISA+ + G ++   E F  M +    PD   ++ +IQ 
Sbjct: 370 ISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQG 407



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 139/329 (42%), Gaps = 37/329 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           FT ++  L K  +  +   + ++++  G +P++  + +LV  Y   G + EA   ++ M+
Sbjct: 437 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSME 496

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           SV   +PD+YTY+ L+    K  R D    +  +M +  +  ++V+YN I+ G  +A++ 
Sbjct: 497 SVG-VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRT 555

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M+ESG     I T  +++     +   ++      +   M VK DI     
Sbjct: 556 IVAKEMFHEMIESG-MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDI----- 609

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
                                         +T+NIVI    K G  ++ +E F  +   G
Sbjct: 610 ------------------------------LTFNIVIRAMFKVGRRQEAKELFAAISTYG 639

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P  +TY  +++   K       D++   +E S    D+   N II      G+V K G
Sbjct: 640 LVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAG 699

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALG 445
                + ++  +P+  T + +I  ++  G
Sbjct: 700 NYLSKIDKKGILPEATTTSLLIYLFSVNG 728



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  M+  G+  S+  Y  ++    ++   DEA   +  + S+ + K D+ T++I+I++ 
Sbjct: 561 MFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM-NVKFDILTFNIVIRAM 619

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R    +++ A +S  G+  + +TY  +I    K + FE+ ++ FS+M E   C PD
Sbjct: 620 FKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM-EKSSCTPD 678

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
              LN +I    N G + K   + ++ +  G+  +  T ++L   +   G Y   R  + 
Sbjct: 679 SRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY---REYIK 735

Query: 316 FMQKRFFF 323
            + +++ F
Sbjct: 736 LLPEKYRF 743


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 2/348 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T   ++  L K ++ E        M   G+ P V  Y  L++AY + GLL+EAF 
Sbjct: 355 QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 414

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            ++ M S    KP V+TY+ +I    K  ++   + +L EM  +G+     TYN ++   
Sbjct: 415 LMDSM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 473

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +     + E  F  M  S G  PD+ + +++I     +G +++  K++ +    G+  D
Sbjct: 474 CRNDNMMDAERIFDEM-PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 532

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
                IL   + R G+  +   V D M ++     VVTYN ++    K   + + +E F 
Sbjct: 533 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFT 592

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  RG+ P+  T+ +L++ Y K G + K  ++   +   ++  D   +N +I  + +  
Sbjct: 593 EMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 652

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++EK+ EL+  M  R   P++I++  +I  Y  +G    A  L ++M+
Sbjct: 653 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 700



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 165/326 (50%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +L K    +QA   F  M + GL P   +YT L+  + ++G++ EA    ++M
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 559

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  DV TY+ ++    K       +++  EM+  G+     T+ T+I+GY K   
Sbjct: 560 LE-QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGN 618

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  + F  M++     PD+ T N++I  +     +EK+ + +N+     +  +  +  
Sbjct: 619 MNKAVTLFEMMIQRN-LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 677

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y   G   +   + D M ++ F  T++T N +++ + +AG+  K +E+   M  +
Sbjct: 678 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 737

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ ITY +L++ + K   + +  +++ ++ENS ++ D   +N I++ + + G +++ 
Sbjct: 738 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEA 797

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             + L M ER   PD  T+ ++I  +
Sbjct: 798 ELIMLKMIERGVNPDRSTYTSLINGH 823



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 164/361 (45%), Gaps = 39/361 (10%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F V+ S GL  S++   +L+    + G +D A+    ++   S  + +VYT +I+I +  
Sbjct: 311 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR-SGVQVNVYTLNIMINALC 369

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K  + +  +  L++M   G+    VTYNT+I+ Y +    EE      +M    G  P +
Sbjct: 370 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKPCV 428

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMD 315
           FT N++I+    +G   + +   +E   +G+  D  T NIL     R   M D  R + D
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER-IFD 487

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  +   P +V+++ +I    K G +++  +YF+ MK+ G+ P+++ Y  L+  + + G
Sbjct: 488 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 547

Query: 376 LI---MKV-DSILRQVENSDVIL-------------------------------DTPFFN 400
           ++   +KV D +L Q    DV+                                D   F 
Sbjct: 548 VMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 607

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I+ Y + G++ K   LF  M +R+  PD +T+ T+I  +      E    L N MI+ 
Sbjct: 608 TLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 667

Query: 461 K 461
           +
Sbjct: 668 R 668



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 156/350 (44%), Gaps = 22/350 (6%)

Query: 110 YQARCQTFTKLMVMLGKCKQ-PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           ++   Q+F+ ++ +L + ++ P+  +++  ++   G+   V++  +LV  YG        
Sbjct: 232 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVS-RVEIVESLVLTYG-------- 282

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
                      +C  +   + +L+++  +  +     +    +   G+  S    N+++ 
Sbjct: 283 -----------NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLG 331

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G  K    +     +  +V SG    +++TLN MI+A   +  IE  + + ++    GV 
Sbjct: 332 GLVKVGWVDLAWEIYQEVVRSG-VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVF 390

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ T N L  +Y R G+ ++   +MD M  +   P V TYN +I    K G   + +  
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M   GM P++ TY  L+    +   +M  + I  ++ +  V+ D   F+ +I    +
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G +++  + F  MK     PDN+ +  +I  +   G+   A  + ++M+
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 560



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 114 CQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           C T  K     G C+     +A      ML  G+ P    Y  L++ + +   +D AF+ 
Sbjct: 711 CNTIVK-----GYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFAL 765

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +N M++ S   PDV TY++++   ++  R    E I+ +M   G+     TY ++I+G+ 
Sbjct: 766 VNKMEN-SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHV 824

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIF 257
                +E       M++ G    D F
Sbjct: 825 TQNNLKEAFRVHDEMLQRGFVPDDKF 850


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 159/324 (49%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    +   AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M
Sbjct: 276 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 335

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   PD++TYS LI       R D  + +   M       + VTYNT+I G+ KAK+
Sbjct: 336 IKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE    F  M + G    +  T N++I     +G+ +  +K + +    GV  DI T +
Sbjct: 395 VEEGMELFREMSQRG-LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 453

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     + G  +K   V +++QK    P + TYNI+IE   KAG +E   + F  +  +
Sbjct: 454 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 513

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN I Y +++S + + GL  + D++ R+++    + ++  +N +I A  + GD    
Sbjct: 514 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 573

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
            EL   M+    V D  T + +I 
Sbjct: 574 AELIKEMRSCGFVGDASTISMVIN 597



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           YQ    TF  L+  L    +  +A  L + M++ G +P +  Y  +V+   + G +D A 
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           S +  M+     + DV  Y+ +I +   +   +    +  EM   GI  + VTYN++I  
Sbjct: 225 SLLKKMEK-GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                ++ +     S M+E    +P++ T +++I A+   G + + EK Y+E     +  
Sbjct: 284 LCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 342

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           DI T + L   +      D+ + + + M  +  FP VVTYN +I+ F KA  +E+  E F
Sbjct: 343 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 402

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  RG+  N++TY +L+    +AG       I +++ +  V  D   ++ ++    + 
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 462

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK   +F  +++    PD  T+  MI+     G  E   +L
Sbjct: 463 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 506



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 192/438 (43%), Gaps = 49/438 (11%)

Query: 59  FAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           F+++ +    +S  Y+    + VL  L       K   A+ +FG + Q +   +  + F 
Sbjct: 17  FSLRGVYFSAASYDYREKLSRNVLLDL-------KLDDAVDLFGEMVQSRPLPSIVE-FN 68

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT--ALVSAYGQSGLLDEAFSTINDMK 176
           KL+  + K  + +    L E M    L+ S D+Y+   L++ + +   L  A + +  M 
Sbjct: 69  KLLSAIAKMNKFDLVISLGERM--QNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 126

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +   +PD+ T S L+       R      ++ +M  +  + + VT+NT+I G     K 
Sbjct: 127 KLG-YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 185

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE-------KMEK------------ 277
            E  +    MV + GC PD+FT  ++++     G+I+       KMEK            
Sbjct: 186 SEAVALIDRMV-ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 244

Query: 278 ----------------WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
                            + E +  G++ ++ T N L +     G +     ++  M +R 
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 304

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P VVT++ +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +  
Sbjct: 305 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 364

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   + + D   +   +N +I  + +A  VE+  ELF  M +R  V + +T+ T+IQ  
Sbjct: 365 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 424

Query: 442 NALGMTEAAQNLENKMIA 459
              G  + AQ +  KM++
Sbjct: 425 FQAGDCDMAQKIFKKMVS 442


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    +   AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKA 233
              S   PD++TYS LI       R D  + +   M  +  +C  + VTYNT+I G+ KA
Sbjct: 352 IKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 408

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K+ EE    F  M + G    +  T N++I     +G+ +  +K + +    GV  DI T
Sbjct: 409 KRVEEGMELFREMSQRG-LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 467

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +IL     + G  +K   V +++QK    P + TYNI+IE   KAG +E   + F  + 
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G+KPN I Y +++S + + GL  + D++ R+++    + ++  +N +I A  + GD  
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKA 587

Query: 414 KMGELFLTMKERHCVPDNITFATMIQ 439
              EL   M+    V D  T + +I 
Sbjct: 588 ASAELIKEMRSCGFVGDASTISMVIN 613



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           YQ    TF  L+  L    +  +A  L + M++ G +P +  Y  +V+   + G +D A 
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           S +  M+     + DV  Y+ +I +   +   +    +  EM   GI  + VTYN++I  
Sbjct: 241 SLLKKMEK-GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                ++ +     S M+E    +P++ T +++I A+   G + + EK Y+E     +  
Sbjct: 300 LCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           DI T + L   +      D+ + + + M  +  FP VVTYN +I+ F KA  +E+  E F
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  RG+  N++TY +L+    +AG       I +++ +  V  D   ++ ++    + 
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK   +F  +++    PD  T+  MI+     G  E   +L
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 192/438 (43%), Gaps = 49/438 (11%)

Query: 59  FAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           F+++ +    +S  Y+    + VL  L       K   A+ +FG + Q +   +  + F 
Sbjct: 33  FSLRGVYFSAASYDYREKLSRNVLLDL-------KLDDAVDLFGEMVQSRPLPSIVE-FN 84

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT--ALVSAYGQSGLLDEAFSTINDMK 176
           KL+  + K  + +    L E M    L+ S D+Y+   L++ + +   L  A + +  M 
Sbjct: 85  KLLSAIAKMNKFDLVISLGERM--QNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +   +PD+ T S L+       R      ++ +M  +  + + VT+NT+I G     K 
Sbjct: 143 KLG-YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE-------KMEK------------ 277
            E  +    MV + GC PD+FT  ++++     G+I+       KMEK            
Sbjct: 202 SEAVALIDRMV-ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 260

Query: 278 ----------------WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
                            + E +  G++ ++ T N L +     G +     ++  M +R 
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P VVT++ +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +  
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   + + D   +   +N +I  + +A  VE+  ELF  M +R  V + +T+ T+IQ  
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 442 NALGMTEAAQNLENKMIA 459
              G  + AQ +  KM++
Sbjct: 441 FQAGDCDMAQKIFKKMVS 458


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 190/415 (45%), Gaps = 47/415 (11%)

Query: 38  IQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLA 97
           I+ELG + E +K +      EFA+K        ++ KN   K     +    +  K  +A
Sbjct: 203 IRELGNRGECDKAVGFY---EFAVKR-------ERRKNEQGKLASAMISTLGRYGKVTIA 252

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
            +IF        Y      F+ L+   G+    E+A  +F  M   GL+P++  Y A++ 
Sbjct: 253 KRIFETAFSGG-YGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVID 311

Query: 158 AYGQSGL-----------------------------------LDEAFSTINDMKSVSDCK 182
           A G+ G+                                   L EA   + D  S    +
Sbjct: 312 ACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIE 371

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            DV++Y+ L+ +  K  + DL  +ILA+M    I  + V+Y+T+IDG+ KA +F+E  + 
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M        D  + N+++S Y   G  E+      E   +G+K D+ T N L   YG
Sbjct: 432 FGEM-RYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYG 490

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G YD+++ V   M++    P ++TY+ +I+ + K G  ++  E F++ K  G++ + +
Sbjct: 491 KQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVV 550

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            Y +L+ A  K GL+    S++ ++    +  +   +N II A+G++  +E+  +
Sbjct: 551 LYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 605



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 177/399 (44%), Gaps = 49/399 (12%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + ++  LG+  +   A  +FE   S G   +V  ++AL+SAYG+SGL +EA S  N MK 
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 178 -------------VSDC----------------------KPDVYTYSILIKSCTKFHRFD 202
                        +  C                      +PD  T++ L+  C++   ++
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWE 356

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS--AMVESGGCHPDIFTLN 260
               +  EMS   IE    +YNT++D   K     +M+ +F   A + +    P++ + +
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTLLDAICKGG---QMDLAFEILAQMPAKRIMPNVVSYS 413

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I  +  +G  ++    + E   + +  D  + N L   Y + G  ++   ++  M   
Sbjct: 414 TVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASV 473

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                VVTYN ++  +GK G  +++++ F +MK   + PN +TY +L+  YSK GL  + 
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEA 533

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             + R+ +++ +  D   ++ +I A  + G V     L   M +    P+ +T+ ++I A
Sbjct: 534 MEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593

Query: 441 YNALGMTEAAQNLEN---------KMIAMKENSGKKLIQ 470
           +      E + +  N          +  + E  G ++IQ
Sbjct: 594 FGRSATMERSADYSNGGSLPFSSSALSELTETEGNRVIQ 632



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 65/339 (19%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV---MLSDGLKPSVD 150
           W+ A  +F  +  ++  Q     F+   ++   CK   Q  L FE+   M +  + P+V 
Sbjct: 355 WEAARNLFDEMSNRRIEQ---DVFSYNTLLDAICKGG-QMDLAFEILAQMPAKRIMPNVV 410

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y+ ++  + ++G  DEA +   +M+ + +   D  +Y+ L+   TK  R +    IL E
Sbjct: 411 SYSTVIDGFAKAGRFDEALNLFGEMRYL-NIALDRVSYNTLLSIYTKVGRSEEALDILRE 469

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M+ +GI+   VTYN ++ GYGK  K++E++  F+ M       P++ T +++I  Y   G
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREH-VLPNLLTYSTLIDGYSKGG 528

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             ++  + + EF   G++AD+   + L  +  + G+     S++D M K    P VVTYN
Sbjct: 529 LYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYN 588

Query: 331 I----------------------------------------VIETFG------------- 337
                                                    VI+ FG             
Sbjct: 589 SIIDAFGRSATMERSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKD 648

Query: 338 -KAG--HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            K G   +  + E F+KM    +KPN +T+ ++++A S+
Sbjct: 649 CKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSR 687


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +  
Sbjct: 115 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLH 174

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGK 232
                 C PDV++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K
Sbjct: 175 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFK 234

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F  MV+  G  PD+ T NS++ A   +  ++K E +  +     V  +  
Sbjct: 235 EGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNW 293

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M++    P VVT ++++ +  K G I++  + F  M
Sbjct: 294 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 353

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+  +Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G +
Sbjct: 354 AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGML 413

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K   +F  M++    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 414 DKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P +  Y ++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNL 298

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 299 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 358

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +PD+F+ N M++ Y   G +  M   ++     G+  D  T N+L K+Y   GM DK  
Sbjct: 359 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 417

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 418 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 477

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         PD 
Sbjct: 478 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 537

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + +  ++  Y  +G  E A  + + M++
Sbjct: 538 VVYNMLMDGYCLVGKMEKALRVFDAMVS 565



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A      M++  + P+   Y  L+  Y  +G   EA     +M
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV T S+L+ S  K+ +      +   M+  G      +YN +++GY     
Sbjct: 319 RRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 377

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  PD +T N +I AY N G ++K    +NE    GVK D+ T  
Sbjct: 378 LVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYR 436

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    YN +I+ F   G + K +E   ++ + 
Sbjct: 437 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNN 496

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM  + + + S+++   K G +M   +I     N  +  D   +N ++  Y   G +EK 
Sbjct: 497 GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA 556

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 557 LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 599



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 158/350 (45%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M
Sbjct: 399 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 458

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y+ LI+           +++++E+   G+    V +++II+   K  +
Sbjct: 459 ID-QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HPD    N ++  Y   G +EK  + ++     G++ ++    
Sbjct: 518 VMDAQNIFDLTVNVG-LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYG 576

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M +R   P+ + Y+I+I+   +AG     +  F +M   
Sbjct: 577 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTES 636

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  +  TY  ++    K     +   + +++   +V ++    N +I    Q   VE+ 
Sbjct: 637 GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 696

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 697 KDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 742



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N +++G+ +AK+ +E    
Sbjct: 112 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 171

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 172 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 199

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 200 KSGQADDLLRMMA-EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 258

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 356



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +   A  +F++ ++ GL P   VY  L+  Y   G +++A    + M 
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 564

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+V  Y  L+    K  R D    +  EM   GI+ S + Y+ IIDG  +A + 
Sbjct: 565 S-AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRT 623

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    DI T N ++     +   ++    + E   M VK +I TLN 
Sbjct: 624 VPAKMKFHEMTESG-IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 682

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P+VVTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 683 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 742

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +PNS     +V    K   I++  + L +++  +  L+
Sbjct: 743 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 781


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 166/392 (42%), Gaps = 33/392 (8%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
           VL  L    +  KW + L++   L+QQ W+      F  ++   GK  QP  A L F  M
Sbjct: 74  VLGTLIRLRQLNKWTMVLEVLLWLKQQDWWNFGIHDFNLMIAAYGKLGQPGIAELSFTEM 133

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              GL+P+V  +T+L+ A+ ++G    A S   +M        +V TY + I +  K  R
Sbjct: 134 REVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEV-TYQVYINALCKAER 192

Query: 201 FDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------- 250
           F+  E+I   +      +  A  YN ++  YGKA KF E ++ F  M  +G         
Sbjct: 193 FNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFN 252

Query: 251 -------------GC---------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                         C          PD+ T   +I+AY  +  +E+    + E    G++
Sbjct: 253 SLMAFQKTVADAEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLR 312

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
                 N L  +Y +    +   S+   M +    P + +Y  ++  +   G+++K E  
Sbjct: 313 PSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERL 372

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            K+MK  G++PN +TY +L+  Y+    I  +      ++ + +  ++  F  ++  +GQ
Sbjct: 373 LKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQ 432

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             D E     F  M +  C  D  + A ++ A
Sbjct: 433 QEDFESALSWFKKMLDSGCPADQRSRAALMDA 464



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I   N MI+AYG  G     E  + E   +G++ ++     L +++ R G + +  S+  
Sbjct: 107 IHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQ 166

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKA 374
            M K    PT VTY + I    KA      E  FK +      KP++  Y  ++  Y KA
Sbjct: 167 EMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKA 226

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G   +  ++ RQ++ + V +    FN +++      D E        M+     PD IT+
Sbjct: 227 GKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAEA---CLRHMQAAKIKPDVITY 283

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
             +I AY+     E A  +  +M+A
Sbjct: 284 TGLINAYSKARRVEEAHVVFREMVA 308


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 164/352 (46%), Gaps = 4/352 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG  +  + Y      FT   ++ G CK  +  +A  L + M    LKP+V VY  L+  
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 358

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G  DEAF  I +M +    +P+  TY  L++   K  + D    +L +M       
Sbjct: 359 FMREGNADEAFKMIKEMVAAG-VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             +TYN II+G+ +    ++     S M E+ G  P+++T + MI     SG  EK    
Sbjct: 418 DTITYNLIIEGHFRHHSKKDAFRLLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    G+K +      L   Y R G       + D M K    P +  YN +I    K
Sbjct: 477 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 536

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +E+  +YF +M+ RG+ PN  TY  L+  Y K G +   + +++++ ++ +  +   
Sbjct: 537 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 596

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +  ++ +Y ++ D+EK+   F +M ++  + DN  +  +I   ++ G  EAA
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAA 648



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 159/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K ++ + A  +   M   G   +   Y  L++   +SG ++EAF    DM
Sbjct: 246 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PD +TY  LI    K  R +  + +L EMS   ++ + V Y  +IDG+ +   
Sbjct: 306 EDYG-LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 364

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       MV + G  P+  T ++++      G +++      +      + D  T N
Sbjct: 365 ADEAFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 423

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ + + R         ++  M+     P V TY+I+I    ++G  EK  +  ++M  +
Sbjct: 424 LIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 483

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN+  Y  L+S Y + G +     I  ++   +V+ D   +N +I    + G VE+ 
Sbjct: 484 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 543

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            + F  M+ER  +P+  T++ +I  Y   G  E+A+ L  +M+
Sbjct: 544 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 586



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 4/359 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +        +T  +++ G C+  +PE+AS L E M + GLKP+  VY  L+S 
Sbjct: 439 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 498

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y + G +  A    + M  V +  PD+Y Y+ LI   +K  R +   K  A+M   G+  
Sbjct: 499 YCREGNVSLACEIFDKMTKV-NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 557

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +  TY+ +I GY K    E  E     M+++G    D+  ++ ++ +Y  S +IEK+   
Sbjct: 558 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID-LLESYFKSDDIEKVSST 616

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +      GV  D +   IL  +   +G  +    V+  ++K    P V  Y+ +I    K
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 676

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
               EK      +M  +G+ PN + Y +L+    K+G I    ++   +    ++ +   
Sbjct: 677 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 736

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +I    + GD+     L+  M      PD   ++ +    ++ G  E A  L  +M
Sbjct: 737 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 170/400 (42%), Gaps = 50/400 (12%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEA-LDEAIKQKKWQLALKI 100
           G+ K    + +K L  E +   ++  V    Y NL    + E   DEA K  K  +A  +
Sbjct: 323 GLCKSRRSNEAKALLDEMSCAELKPNVVV--YANLIDGFMREGNADEAFKMIKEMVAAGV 380

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
                     Q    T+  L+  L K  Q ++ASLL + M+ D  +P    Y  ++  + 
Sbjct: 381 ----------QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHF 430

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           +     +AF  +++M++     P+VYTYSI+I    +    +    +L EM+  G++ +A
Sbjct: 431 RHHSKKDAFRLLSEMENAG-ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 489

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             Y  +I GY +          F  M +     PD++  NS+I      G +E+  K++ 
Sbjct: 490 FVYAPLISGYCREGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFA 548

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +                                   MQ+R   P   TY+ +I  + K G
Sbjct: 549 Q-----------------------------------MQERGLLPNEFTYSGLIHGYLKNG 573

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +E  E+  ++M   G+KPN + Y  L+ +Y K+  I KV S  + + +  V+LD   + 
Sbjct: 574 DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYG 633

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +I     +G++E    +   +++   VPD   ++++I  
Sbjct: 634 ILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 673



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 7/260 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+ S  F+ ML  G+     +Y  L+     SG ++ AF  ++ ++  +   PDV+ YS 
Sbjct: 611 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK-NGSVPDVHVYSS 669

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K    +    IL EMS  G++ + V YN +IDG  K+       + F++++ + 
Sbjct: 670 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AK 728

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+  T  S+I      G+I      YNE    G+  D    ++LT     AG    +
Sbjct: 729 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG---DL 785

Query: 311 RSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              M  +++ F     ++ ++N +++ F K G +++  +    +  RG+ PN++T  +++
Sbjct: 786 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 845

Query: 369 SAYSKAGLIMKVDSILRQVE 388
           S  S+AG + +V +I  +++
Sbjct: 846 SGLSEAGKLSEVHTIFVELQ 865



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 112/240 (46%), Gaps = 1/240 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S    + ++D Y K+ + ++  +    M+   G  P I   N+++     +  +  + K 
Sbjct: 173 SPAVLDVLVDTYKKSGRVQD-AAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKV 231

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                  G+  D+ T + L ++Y +   +D  + V+  M++R      VTYN++I    +
Sbjct: 232 REFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCR 291

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           +G +E+   + K M+  G+ P+  TY +L++   K+    +  ++L ++  +++  +   
Sbjct: 292 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 351

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +I  + + G+ ++  ++   M      P+ IT+  +++    +G  + A  L  +M+
Sbjct: 352 YANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 411



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 129/306 (42%), Gaps = 23/306 (7%)

Query: 99  KIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K FG+L +  ++        +  L+  L K      A  +F  +L+ GL P+   YT+L+
Sbjct: 682 KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLI 741

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G +  AF   N+M + +   PD + YS+L   C+     +    ++ EM +L  
Sbjct: 742 DGSCKVGDISNAFYLYNEMLA-TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM-FLRG 799

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S  ++N ++DG+ K  K +E       ++   G  P+  T+ ++IS    +G + ++ 
Sbjct: 800 HASISSFNNLVDGFCKRGKMQETLKLLHVIM-GRGLVPNALTIENIISGLSEAGKLSEVH 858

Query: 277 KWYNEFN------------------LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
             + E                    +   K  +  ++ + + + + G  DK   + D + 
Sbjct: 859 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 918

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
            +       +Y  +++   + G + +     K+M  RG+ P+      L++    +G I 
Sbjct: 919 AKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQ 978

Query: 379 KVDSIL 384
           + +++L
Sbjct: 979 EHNTVL 984



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
           + S   A+ +SG   P +  L+ ++  Y  SG ++   +        G+   I+  N L 
Sbjct: 159 LASIHRALSDSGHRSPAV--LDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALL 216

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           K   RA     +  V +FM      P V TY+ +IE + K    +  ++   +M+ RG  
Sbjct: 217 KDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCG 276

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            N++TY  L++   ++G + +     + +E+  ++ D   +  +I+   ++    +   L
Sbjct: 277 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 336

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              M      P+ + +A +I  +   G  + A  +  +M+A
Sbjct: 337 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 377



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 81/192 (42%)

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  PD++T +++I AY      +  +K   E    G   +  T N+L     R+G  ++
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
                  M+     P   TY  +I    K+    + +    +M    +KPN + Y +L+ 
Sbjct: 298 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 357

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            + + G   +   +++++  + V  +   ++ ++    + G +++   L   M      P
Sbjct: 358 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417

Query: 430 DNITFATMIQAY 441
           D IT+  +I+ +
Sbjct: 418 DTITYNLIIEGH 429


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +  
Sbjct: 125 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLH 184

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGK 232
                 C PDV++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K
Sbjct: 185 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFK 244

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F  MV+  G  PD+ T NS++ A   +  ++K E +  +     V  +  
Sbjct: 245 EGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNW 303

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M++    P VVT ++++ +  K G I++  + F  M
Sbjct: 304 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 363

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+  +Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G +
Sbjct: 364 AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGML 423

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K   +F  M++    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 424 DKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P +  Y ++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNL 308

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 309 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 368

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +PD+F+ N M++ Y   G +  M   ++     G+  D  T N+L K+Y   GM DK  
Sbjct: 369 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 427

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 428 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 487

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         PD 
Sbjct: 488 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 547

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 548 VVYSMLMDGYCLVGKMEKALRVFDAMVS 575



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A      M++  + P+   Y  L+  Y  +G   EA     +M
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 328

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV T S+L+ S  K+ +      +   M+  G      +YN +++GY     
Sbjct: 329 RRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  PD +T N +I AY N G ++K    +NE    GVK D+ T  
Sbjct: 388 LVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYR 446

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    YN +I+ F   G + K +E   ++ + 
Sbjct: 447 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNN 506

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM  + + + S+++   K G +M   +I     N  +  D   ++ ++  Y   G +EK 
Sbjct: 507 GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKA 566

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 567 LRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 609



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 157/348 (45%), Gaps = 3/348 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W+ A+++F  +R+         T + LM  L K  + ++A  +F+ M   G  P V  Y
Sbjct: 317 QWKEAVRVFKEMRRHSIL-PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 375

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             +++ Y   G L +  + + D+       PD YT+++LIK+       D    I  EM 
Sbjct: 376 NIMLNGYATKGCLVD-MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G++   VTY T+I    +  K ++    F+ M++ G   PD +  N +I  +   G++
Sbjct: 435 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG-VAPDKYAYNCLIQGFCTHGSL 493

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K ++  +E    G+  DI   + +  +  + G     +++ D        P  V Y+++
Sbjct: 494 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSML 553

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ +   G +EK    F  M   G++PN + YC+LV+ Y K G I +  S+ R++    +
Sbjct: 554 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGI 613

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
              T  ++ II    QAG        F  M E     D  T+  +++ 
Sbjct: 614 KPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 159/350 (45%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M
Sbjct: 409 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 468

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y+ LI+           +++++E+   G+    V +++II+   K  +
Sbjct: 469 ID-QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 527

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HPD    + ++  Y   G +EK  + ++     G++ ++    
Sbjct: 528 VMDAQNIFDLTVNVG-LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYC 586

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M +R   P+ + Y+I+I+   +AG     +  F +M   
Sbjct: 587 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTES 646

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  +  TY  ++    K     +   + +++   +V ++    N +I    Q   VE+ 
Sbjct: 647 GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 706

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP+ +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 707 KDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 752



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N +++G+ +AK+ +E    
Sbjct: 122 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 181

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 182 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 209

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 210 KSGQADDLLRMMA-EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 268

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 328

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 329 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 366



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +   A  +F++ ++ GL P   VY+ L+  Y   G +++A    + M 
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 574

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+V  Y  L+    K  R D    +  EM   GI+ S + Y+ IIDG  +A + 
Sbjct: 575 S-AGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRT 633

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    DI T N ++     +   ++    + E   M VK +I TLN 
Sbjct: 634 VPAKMKFHEMTESG-IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 692

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P VVTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 693 MIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 752

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +PNS     +V    K   I++  + L +++  +  L+
Sbjct: 753 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 791


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 174/360 (48%), Gaps = 12/360 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVML-SDGLKPSVDV 151
           A++IF     Q+  ++ C+    TF  L+   G  ++PE++  L E+M  +  LKP+   
Sbjct: 146 AMEIF-----QKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRT 200

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  LV A  +   + EA++ ++ M + S  +PDV TY+ L ++  +    +  E I+ +M
Sbjct: 201 YNILVGALCKKKSIKEAWNVVHQMLA-SGVQPDVVTYNTLARAYAQDGETNKAESIIVDM 259

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               +  +  T   I+ GY +     E       M + G  HP++   NS+I  + + G+
Sbjct: 260 LNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLG-IHPNLVIFNSLIKGFLDIGD 318

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            + ++K        GVK D+ T + +   +  AG  DK + + D M K    P +  ++I
Sbjct: 319 SDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSI 378

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           + + F +AG   K E     M   G++PN + + +++S +  AG + K   +   + + D
Sbjct: 379 LAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMD 438

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           V  +   F  +I  YG+A    +  E+   M+E + VP+N T   + +A+ ++GM   A+
Sbjct: 439 VSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIGMVNDAK 498



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ-------SGLLDE 167
           ++ TKLM +L +  +P++A  +F  ++  G +P+   YTALV+A  +       SGLL E
Sbjct: 58  RSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSE 117

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
              T          KPD    + +I + ++        +I  +M   G + +  T+NT+I
Sbjct: 118 MEET--------GIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLI 169

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            GYG  +K EE       M  +    P+  T N ++ A     +I++     ++    GV
Sbjct: 170 KGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGV 229

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + D+ T N L ++Y + G  +K  S++  M  +   P   T  I++  + + G++ +   
Sbjct: 230 QPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALR 289

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
              +M+  G+ PN + + SL+  +   G    VD  L  +E S V  D   F+ I++ + 
Sbjct: 290 VVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWS 349

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            AG ++K  E+F  M +    PD   F+ + + +   G    A++L N M
Sbjct: 350 SAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFM 399



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 183/420 (43%), Gaps = 42/420 (10%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +++ K Q A  IF  L +Q  ++    T+T L+  L + K+ +  S L   M   G+KP 
Sbjct: 68  VERGKPQEAQFIFNSLVEQG-HRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPD 126

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             +  A+++A+ +SG + EA      M+  S CKP   T++ LIK      + +   K+L
Sbjct: 127 SILLNAIINAFSESGNVKEAMEIFQKMEE-SGCKPTTSTFNTLIKGYGIIRKPEESMKLL 185

Query: 209 AEMSYL-GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             M+    ++ +  TYN ++    K K  +E  +    M+ SG   PD+ T N++  AY 
Sbjct: 186 ELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASG-VQPDVVTYNTLARAYA 244

Query: 268 NSGNIEKMEK-----------------------WYNEFNL------------MGVKADIQ 292
             G   K E                        +  + NL            +G+  ++ 
Sbjct: 245 QDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLV 304

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N L K +   G  D +   +  M++    P V+T++ ++  +  AG ++K +E F  M
Sbjct: 305 IFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDM 364

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G++P+   +  L   + +AG  +K +S+L  +    V  +   F  IIS +  AG +
Sbjct: 365 LKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKM 424

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK---ENSGKKLI 469
           EK  ++F  M +    P+  TF T+I  Y        A+ +   M  M    ENS  KL+
Sbjct: 425 EKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLV 484


>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           macropoda]
          Length = 427

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-------------------- 175
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M                    
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 176 ------KSVS--------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
                 K++S           PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTX 122

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +   +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLE 241

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  
Sbjct: 242 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQT 301

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 163/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I +MK
Sbjct: 54  YSNLIELSRKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 113

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 114 A-AGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 172

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 173 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 228

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 229 YNSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 288

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 289 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATY 348

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I    +      + E+F  M+     PD+   A ++ AY 
Sbjct: 349 VFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYG 408

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 409 KLQEFDKANDVYMEM 423



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS + +SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y 
Sbjct: 74  FSRLKKSG-FTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYV 132

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N +   YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEM 252

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 132 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 188

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ +     K    +    
Sbjct: 189 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMXMIYGKTLEHEKANN 247

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 248 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 307

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 308 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 367

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      IV+  +GK    +K  + + +M+  G
Sbjct: 368 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 427


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 3/333 (0%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+  + ++A  +FE M     +PSV  Y A+++   +    D+A      M+      PD
Sbjct: 87  GRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRD-KGIVPD 145

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           VYT++I +KS  +  R     ++L  M   G E SAV Y T+I G+ +     E    F 
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFE 205

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+  G C PDI   N +I      G++++ E+  N+    GV  ++ T+NI  + + + 
Sbjct: 206 EMLGLGIC-PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            M ++   ++D +  R   P V+TYN +I    K   + + E Y +KM + G +P+  TY
Sbjct: 265 AMLNEAIRLLDGV-GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTY 323

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            S++  Y K G++   D ILR       + D   +  +I+   Q GD+++   +F    E
Sbjct: 324 NSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAME 383

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +   P+ +   T+++  +  G+   A  L N+M
Sbjct: 384 KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM 416



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 46/335 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L +    ++A  +F   +  GLKP++ +   LV    Q GL+ +A   +N+M
Sbjct: 357 TYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM 416

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S + C PD++TY+++I    K                  I C +   N +ID   K   
Sbjct: 417 -SENGCSPDIWTYNLVINGLCK------------------IGCVSDADNLVIDAIAK--- 454

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADI 291
                          G  PD+FT N++I  Y         IE +++ +N     GV  D+
Sbjct: 455 ---------------GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNH----GVSPDV 495

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N +     +AG Y+ +      M ++   P ++TYNI+ E+F KA  +E+     ++
Sbjct: 496 ITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEE 555

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQAG 410
           M+++G+ P+ + + +L+  +   G +     + ++V+       T   +N +I+A+    
Sbjct: 556 MQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKL 615

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++    +LF  M E    PD+ T+  MI  +   G
Sbjct: 616 NMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTG 650



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 3/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +  +A      M+++G +P    Y +++  Y + G++  A   + D 
Sbjct: 287 TYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRD- 345

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     PD  TY  LI    +    D    +  E    G++ + V  NT++ G  +   
Sbjct: 346 GAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGL 405

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +     + M E+G C PDI+T N +I+     G +   +    +    G   D+ T N
Sbjct: 406 ILQALKLMNEMSENG-CSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFN 464

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +    D    ++D M      P V+TYN ++    KAG  E +   FK M  +
Sbjct: 465 TLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEK 524

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN ITY  L  ++ KA  + +  +++ +++N  +  D   F  ++  +   GD++  
Sbjct: 525 GCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGA 584

Query: 416 GELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKM 457
            +LF  + E++     I T+  MI A+        A+ L NKM
Sbjct: 585 YQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKM 627



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 3/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT  M    +  +P  A  L   M S G + S   Y  ++  + +     EA     +M
Sbjct: 148 TFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEM 207

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +  C PD+  ++ LI +  +       E++L ++   G+  +  T N  I G+ +   
Sbjct: 208 LGLGIC-PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAM 266

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E       +    G  PD+ T N++I     +  + + E +  +    G + D  T N
Sbjct: 267 LNEAIRLLDGV--GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYN 324

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   Y + GM      ++     + F P   TY  +I    + G I++    F +   +
Sbjct: 325 SIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEK 384

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN +   +LV   S+ GLI++   ++ ++  +    D   +N +I+   + G V   
Sbjct: 385 GLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDA 444

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             L +    +  +PD  TF T+I  Y
Sbjct: 445 DNLVIDAIAKGHLPDVFTFNTLIDGY 470



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A V  Y ++ L  +A    N +K     K  + TY  +I+       F+ +E++LAE 
Sbjct: 9   HVAAVVKYQKNPL--KALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAE- 65

Query: 212 SYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           + + I+   +   Y   +  YG+  K +E    F  M +   C P + + N++++     
Sbjct: 66  TRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERM-DFFNCEPSVQSYNAIMNILVEY 124

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
              ++  K Y      G+  D+ T  I  KS+ R       R +++ M  +    + V Y
Sbjct: 125 RYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAY 184

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             VI  F +  H  +  E F++M   G+ P+ + +  L+    + G + + + +L +V  
Sbjct: 185 CTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLK 244

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             V  +    N  I  + Q   + +   L L    R   PD IT+ T+I
Sbjct: 245 RGVSPNLFTVNIFIQGFCQRAMLNEAIRL-LDGVGRGLTPDVITYNTLI 292



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI-LTKSY 301
           F+++ +  G    + T   MI   G  G  E ME+   E  +      ++ + I   ++Y
Sbjct: 27  FNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNY 86

Query: 302 GRAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           GR G   K++  +D  ++  FF   P+V +YN ++    +  + ++  + + +M+ +G+ 
Sbjct: 87  GRKG---KIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIV 143

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  T+   + ++ +         +L  + +         +  +I  + +     +  EL
Sbjct: 144 PDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHEL 203

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           F  M      PD + F  +I      G  + ++ L NK++
Sbjct: 204 FEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVL 243



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 1/166 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L+   K  K++  +  F L+ ++        T+  L     K ++ E+A  L E M + G
Sbjct: 502 LNGLCKAGKYEDVMGTFKLMMEKGCV-PNIITYNILTESFCKARKVEEALNLIEEMQNKG 560

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           L P V  +  L+  +  +G LD A+     +         + TY+I+I +       ++ 
Sbjct: 561 LTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMA 620

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           EK+  +M   G    + TY  +IDG+ K        S     +E G
Sbjct: 621 EKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKG 666


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +  
Sbjct: 112 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLH 171

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGK 232
                 C PDV++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFK 231

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F  MV+  G  PD+ T NS++ A   +  ++K E +  +     V  +  
Sbjct: 232 EGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNW 290

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M++    P VVT ++++ +  K G I++  + F  M
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 350

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+  +Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G +
Sbjct: 351 AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGML 410

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K   +F  M++    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 411 DKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P +  Y ++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNL 295

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +PD+F+ N M++ Y   G +  M   ++     G+  D  T N+L K+Y   GM DK  
Sbjct: 356 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 414

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 474

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         PD 
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 534

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVS 562



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A      M++  + P+   Y  L+  Y  +G   EA     +M
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV T S+L+ S  K+ +      +   M+  G      +YN +++GY     
Sbjct: 316 RRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  PD +T N +I AY N G ++K    +NE    GVK D+ T  
Sbjct: 375 LVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYR 433

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    YN +I+ F   G + K +E   ++ + 
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNN 493

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM  + + + S+++   K G +M   +I     N  +  D   ++ ++  Y   G +EK 
Sbjct: 494 GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKA 553

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 554 LRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 596



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 157/348 (45%), Gaps = 3/348 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W+ A+++F  +R+         T + LM  L K  + ++A  +F+ M   G  P V  Y
Sbjct: 304 QWKEAVRVFKEMRRHSIL-PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 362

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             +++ Y   G L +  + + D+       PD YT+++LIK+       D    I  EM 
Sbjct: 363 NIMLNGYATKGCLVD-MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G++   VTY T+I    +  K ++    F+ M++ G   PD +  N +I  +   G++
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG-VAPDKYAYNCLIQGFCTHGSL 480

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K ++  +E    G+  DI   + +  +  + G     +++ D        P  V Y+++
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSML 540

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ +   G +EK    F  M   G++PN + YC+LV+ Y K G I +  S+ R++    +
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGI 600

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
              T  ++ II    QAG        F  M E     D  T+  +++ 
Sbjct: 601 KPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG 648



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 158/350 (45%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y+ LI+           +++++E+   G+    V +++II+   K  +
Sbjct: 456 ID-QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HPD    + ++  Y   G +EK  + ++     G++ ++    
Sbjct: 515 VMDAQNIFDLTVNVG-LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYC 573

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M +R   P+ + Y+I+I+   +AG     +  F +M   
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTES 633

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  +  TY  ++    K     +   + +++   +V ++    N +I    Q   VE+ 
Sbjct: 634 GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 693

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 694 KDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 739



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N +++G+ +AK+ +E    
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 168

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 196

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 197 KSGQADDLLRMMA-EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 255

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 353



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 132/279 (47%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +   A  +F++ ++ GL P   VY+ L+  Y   G +++A    + M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+V  Y  L+    K  R D    +  EM   GI+ S + Y+ IIDG  +A + 
Sbjct: 562 S-AGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRT 620

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    DI T N ++     +   ++    + E   M VK +I TLN 
Sbjct: 621 VPAKVKFHEMTESG-IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P+VVTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 680 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +PNS     +V    K   I++  + L +++  +  L+
Sbjct: 740 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 778


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-----------------SV 178
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                 S 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 179 SDCK-----------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
             C                  PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTA 121

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S   +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQT 300

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKXCDYSKAISI 72

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYV 131

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M   G+ P+   Y+ L+
Sbjct: 69  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLL 127

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 128 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 186

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 187 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 245

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 246 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGXEIDQILFQTMIV 303

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 304 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 360 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVY 419

Query: 455 NKM 457
            +M
Sbjct: 420 MEM 422


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 156/350 (44%), Gaps = 41/350 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKS 194
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+ 
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIEL 59

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---- 250
             K   +     I + +   G     V YN +I+ +GKAK F +  S  S M  +G    
Sbjct: 60  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPN 119

Query: 251 ------------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
                                          C  D+ T N MI  YG  G  ++ +K + 
Sbjct: 120 ASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
               MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK  
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTL 239

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             EK     ++M++RG++PNSITY +++S + K G + +   + +++  S V +D   F 
Sbjct: 240 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQ 299

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 300 TMIXAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 157/350 (44%), Gaps = 11/350 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K    A  L   M + G+ P+   Y+AL+
Sbjct: 69  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALL 127

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 128 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 186

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 187 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 245

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 246 NLIQEMQNRGIEPNSITYSTIISIWGKIGKLD--RAAMLFQKLRTSGVEIDQILFQTMIX 303

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 304 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           D   F  +I  + +      + E+F  M      PD+   A ++ AY  L
Sbjct: 360 DITVFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAYGKL 409


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 38/357 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSA----------------------------YG-- 160
           E+A  LF+ M++ G+ P    Y +L+                              YG  
Sbjct: 367 EKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTA 426

Query: 161 -----QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
                 SG LD A++ + +M + S C+P+V  Y+ LIK+  +  RF    ++L EM   G
Sbjct: 427 VKGMCSSGDLDGAYNIVKEMGA-SGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQG 485

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           I      YN++I G  KAKK +E  S    MVE+G   PD FT  + IS Y  +G     
Sbjct: 486 IAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG-FKPDAFTYGAFISGYIEAGEFASA 544

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           +K+  E    GV  +      L   Y + G   +  S    M ++       TY +++  
Sbjct: 545 DKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNG 604

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G +   EE F +M+ +G+ P+  +Y +L+  +SK G + K  SI  ++  + +  +
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSN 664

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
              +N ++  + ++G++EK  EL   M  +   P+ +T+ T+I  Y   G + EA Q
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQ 721



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 3/319 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G+ P    Y +L+    ++  +DEA S + +M   +  KPD +TY   I    +  
Sbjct: 481 MREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE-NGFKPDAFTYGAFISGYIEAG 539

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
            F   +K + EM   G+  + V    +I+ Y K  K  E  S+F +MVE G    D  T 
Sbjct: 540 EFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQG-ILGDAKTY 598

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             +++    +G +   E+ ++E    G+  D+ +   L   + + G   K  S+ D M +
Sbjct: 599 TVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQ 658

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                 V+ YN+++  F ++G IEK +E   +M  +G  PN++TYC+++  Y K+G + +
Sbjct: 659 AGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAE 718

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +  +++   ++ D+  +  ++    +  DVE+   +F T  E+ C   +  F  +I 
Sbjct: 719 AFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET-NEKGCASSSAPFNALIN 777

Query: 440 AYNALGMTEAAQNLENKMI 458
                G TE   ++ N+++
Sbjct: 778 WVFKFGKTELTTDMINRLM 796



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 179/411 (43%), Gaps = 45/411 (10%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +++ ++  A+++   +R+Q         +  L++ L K K+ ++A      M+ +G KP 
Sbjct: 466 LQKSRFGDAVRVLKEMREQ-GIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPD 524

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              Y A +S Y ++G    A   + +M         V    ++ + C K     +IE   
Sbjct: 525 AFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGK---VIEACS 581

Query: 209 AEMSYL--GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           A  S +  GI   A TY  +++G  K  K  + E  F  M    G  PD+F+  ++I  +
Sbjct: 582 AFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEM-RGKGIAPDVFSYGTLIDGF 640

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              GN++K    ++E    G+ +++   N+L   + R+G  +K + ++D M  + F P  
Sbjct: 641 SKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNA 700

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTY  +I+ + K+G + +  + F +MK +G+ P+S  Y +LV    +   + +  +I   
Sbjct: 701 VTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET 760

Query: 387 VENSDVILDTPF--------------------------------------FNCIISAYGQ 408
            E        PF                                      +N +I    +
Sbjct: 761 NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCK 820

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G++E   ELF  M++ + +P  IT+ +++  Y+ +G      ++ +++IA
Sbjct: 821 EGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIA 871



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 166/364 (45%), Gaps = 12/364 (3%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +Q      +T+T LM  L K  +   A  +F  M   G+ P V  Y  L+  + + G + 
Sbjct: 588 EQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQ 647

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  ++M   +    +V  Y++L+    +    +  +++L EMS  G   +AVTY TI
Sbjct: 648 KASSIFDEMVQ-AGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTI 706

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           IDGY K+    E    F  M +  G  PD F   +++       ++E+    + E N  G
Sbjct: 707 IDGYCKSGDLAEAFQLFDEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKG 764

Query: 287 VKADIQTLNILTK---SYGRAGMY-DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
             +     N L      +G+  +  D +  +MD    +F  P  VTYNI+I+   K G++
Sbjct: 765 CASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNL 824

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E  +E F  M+   + P  ITY SL++ Y K G   ++ S+  +V  + +  D   ++ I
Sbjct: 825 EAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVI 884

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKM 457
           I+A+ + G   K   L   M  ++ V D       T   ++  +  +G  E A+ +   M
Sbjct: 885 INAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENM 944

Query: 458 IAMK 461
           + +K
Sbjct: 945 VRLK 948



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 163/379 (43%), Gaps = 13/379 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   KQK+ + A  +   +     + A    ++ L+  L K +  + A+ L   M+S G
Sbjct: 287 IDGLCKQKRLEDAKSLLVEMNSVGLF-ADNVAYSILIDGLLKGRNADAANGLVHEMVSHG 345

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
                 +Y   +    + G +++A +  + M +     P    Y+ LI+    F R   +
Sbjct: 346 FSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFG-VTPGARAYASLIEG---FFREKNV 401

Query: 205 EK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFTL 259
            K   +L E+    I  S  TY T + G   +    +++ +++ + E G  GC P++   
Sbjct: 402 RKGYELLVEIKKRNIVISPYTYGTAVKGMCSSG---DLDGAYNIVKEMGASGCRPNVVIY 458

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            ++I  +          +   E    G+  D    N L     +A   D+ RS +  M +
Sbjct: 459 TTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE 518

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             F P   TY   I  + +AG     ++Y K+M   G+ PN +    L++ Y K G +++
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIE 578

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             S  R +    ++ D   +  +++   + G V    E+F  M+ +   PD  ++ T+I 
Sbjct: 579 ACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLID 638

Query: 440 AYNALGMTEAAQNLENKMI 458
            ++ LG  + A ++ ++M+
Sbjct: 639 GFSKLGNMQKASSIFDEMV 657



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 49/295 (16%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           M++ G C+  + E+A  L + M   G  P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 670 MLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMK-L 728

Query: 179 SDCKPDVYTYSILIKSCTKFHRF------------------------------------- 201
               PD + Y+ L+  C + +                                       
Sbjct: 729 KGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELT 788

Query: 202 -DLIEKIL-AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
            D+I +++       G + + VTYN +ID   K    E  +  F  M +     P + T 
Sbjct: 789 TDMINRLMDGSFDKFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHHM-QKANLMPTVITY 846

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  
Sbjct: 847 TSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFA 906

Query: 320 RFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
           +         ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 907 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELIN 961



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 124/316 (39%), Gaps = 25/316 (7%)

Query: 149 VDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           V ++  L+  Y + G LDEA   FS+  D+    D  P +   + L+ +  K +R DL  
Sbjct: 152 VLLFGILIDGYIEKGFLDEAVFVFSSTKDLDL--DLVPSLARCNHLLDALLKRNRLDLFW 209

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGK------AK----KFEEMESSFSAMVESG----- 250
            +   M    +     +Y  +I  + +      AK    K EE   + +  V+       
Sbjct: 210 DVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKK 269

Query: 251 -----GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
                G  P   + N +I        +E  +    E N +G+ AD    +IL     +  
Sbjct: 270 SMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGR 329

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D    ++  M    F    + Y+  I    K G +EK +  F  M   G+ P +  Y 
Sbjct: 330 NADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYA 389

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           SL+  + +   + K   +L +++  ++++    +   +     +GD++    +   M   
Sbjct: 390 SLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGAS 449

Query: 426 HCVPDNITFATMIQAY 441
            C P+ + + T+I+ +
Sbjct: 450 GCRPNVVIYTTLIKTF 465



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 50/307 (16%)

Query: 165 LDEAFSTINDMKSVSDCK---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           +DEA     ++K    CK   P   +Y++LI    K  R +  + +L EM+ +G+    V
Sbjct: 261 VDEAL----ELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNV 316

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            Y+ +IDG  K +  +        MV S G   D    +  I      G +EK +  ++ 
Sbjct: 317 AYSILIDGLLKGRNADAANGLVHEMV-SHGFSIDPMMYDYFICVMSKEGAMEKAKALFDG 375

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               GV    +    L + + R     K   ++  ++KR    +  TY   ++    +G 
Sbjct: 376 MITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGD 435

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           ++      K+M   G +PN + Y +L+  + +                            
Sbjct: 436 LDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQK--------------------------- 468

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 459
             S +G A  V K       M+E+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 469 --SRFGDAVRVLK------EMREQGIAPDTFCYNSLI-----IGLSKAKKMDEARSFLLE 515

Query: 460 MKENSGK 466
           M EN  K
Sbjct: 516 MVENGFK 522


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 185/379 (48%), Gaps = 14/379 (3%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL--FEVMLSDG 144
           +AI + +  + L    + R+    +     +T  +++ G C   E    L  F  M  +G
Sbjct: 185 DAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNG 244

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+V  Y  L+ AY + G +DEAF  +  M S    +P++ +Y+++I    +       
Sbjct: 245 CLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSS-KGMQPNLISYNVIINGLCREGSMKEA 303

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +IL EM Y G     VTYNT+++GY K   F +     + MV +G   P + T  ++I+
Sbjct: 304 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG-VSPSVVTYTALIN 362

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +   + N+ +  +++++  + G++ + +T   L   + R G+ ++   +++ M +  F P
Sbjct: 363 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422

Query: 325 TVVTYNIVIETFGKAGH--IEKMEEYF---KKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           +VVTYN  I      GH  +E+MEE     ++M  +G+ P+ ++Y +++S + + G + +
Sbjct: 423 SVVTYNAFIH-----GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDR 477

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              + +++    V  D   ++ +I    +   + +  +L   M +    PD  T+ T+I 
Sbjct: 478 AFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLIN 537

Query: 440 AYNALGMTEAAQNLENKMI 458
           AY   G    A +L ++MI
Sbjct: 538 AYCVEGDLNKALHLHDEMI 556



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 176/421 (41%), Gaps = 55/421 (13%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG------ 144
           Q    L LK     R   ++ + C+  +  ++   K  +  Q +L  E+ LS        
Sbjct: 68  QFDQTLTLKFLTWARNHPFFDSHCKCLSLHILTRFKLYKTAQ-TLAQELALSASDPSGSS 126

Query: 145 ----LKPSVDVYTA-------LVSAYGQSGLLDEAFSTINDMKSV--------------- 178
               LK S  VY +       +V +Y    ++D+A +TIN  KS                
Sbjct: 127 IFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDA 186

Query: 179 ---------------------SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                                S   P+VYTY+ILI+                EM   G  
Sbjct: 187 IVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCL 246

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + VTYNT+ID Y K  + +E      +M  S G  P++ + N +I+     G++++  +
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWE 305

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
              E    G   D  T N L   Y + G + +   +   M +    P+VVTY  +I +  
Sbjct: 306 ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC 365

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           KA ++ +  E+F +M+ RG++PN  TY +L+  +S+ GL+ +   IL ++  S       
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 425

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +N  I  +     +E+   +   M E+   PD ++++T+I  +   G  + A  ++ +M
Sbjct: 426 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 485

Query: 458 I 458
           +
Sbjct: 486 V 486



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 17/348 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  + K +   +A   F+ M   GL+P+   YT L+  + + GLL+EA+  +N+M
Sbjct: 356 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 415

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   P V TY+  I       R +    ++ EM   G+    V+Y+TII G+ +  +
Sbjct: 416 TE-SGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 474

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        MVE G   PD  T +S+I        + +      E   MG+  D  T  
Sbjct: 475 LDRAFQMKQEMVEKG-VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYT 533

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +Y   G  +K   + D M  + F P  VTY+++I    K     + +    K+ + 
Sbjct: 534 TLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYE 593

Query: 356 GMKPNSITY------CS---------LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
              P+ +TY      CS         L+  +   GL+ + D +   +   +       +N
Sbjct: 594 ESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYN 653

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            II  + + G++ K   L+  M     VP  +T  T+I+A    GM E
Sbjct: 654 VIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNE 701


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 169/371 (45%), Gaps = 3/371 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + K    A ++F L+  Q+  Q    ++T L+  L +  +  +A  LF  M  D   P+V
Sbjct: 241 RNKGVDNAYEVF-LIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTV 299

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT L+ A   SG   EA +  N+MK    C+P+V+TY++LI    K ++ D   K+L+
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKE-KGCEPNVHTYTVLIDGLCKENKMDEARKMLS 358

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EMS  G+  S VTYN +IDGY K    ++       M ES  C P+  T N +I      
Sbjct: 359 EMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM-ESNSCGPNTRTYNELICGLCKK 417

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             + K     N+     +   + T N L     +    +    ++  M +    P   TY
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           ++ I+T  K G +E+    F  +K +G+K N + Y +L+  Y K G I    S+L ++ N
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
              + ++  +N +I    +   +++   L   M      P  +T+  +I      G  + 
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDH 597

Query: 450 AQNLENKMIAM 460
           A  + N M+++
Sbjct: 598 ALKVFNHMVSL 608



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 3/354 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  ++++   +    T+T L+  L K  + ++A  +   M   GL PSV  Y AL+
Sbjct: 318 ALNLFNEMKEKGC-EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y + G++D+AF  ++ M+S S C P+  TY+ LI    K  +      +L +M    +
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNS-CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S +TYN++I G  K    E      S M E+G   PD +T +  I      G +E+  
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV-PDQWTYSVFIDTLCKEGRVEEAG 494

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             ++     GVKA+      L   Y + G  D   S+++ M      P   TYN++IE  
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K   +++      KM   G+KP  +TY  L+    K G       +   + +     D 
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             +   + AY   G +E++ ++   M E   +PD +T+  +I  Y  LG+T  A
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 5/322 (1%)

Query: 66  KKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM 123
           K +S    K L P  V     +D   K+     A +I  L+          +T+ +L+  
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSC-GPNTRTYNELICG 413

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K ++  +A  L   ML   L PS+  Y +L+    +   L+ A+  ++ M   +   P
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE-NGLVP 472

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D +TYS+ I +  K  R +    +   +   G++ + V Y  +IDGY K  K +   S  
Sbjct: 473 DQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL 532

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M+ +  C P+ +T N +I        +++      +   MGVK  + T  IL     +
Sbjct: 533 ERML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G +D    V + M    + P V TY   +  +   G +E++++   KM   G+ P+ +T
Sbjct: 592 DGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVT 651

Query: 364 YCSLVSAYSKAGLIMKVDSILR 385
           Y  L+  Y++ GL  +    L+
Sbjct: 652 YTVLIDGYARLGLTHRAFDFLK 673



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 4/336 (1%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK     +A L    ++  GL P    YT+L+  + ++  +D A+     M     C+
Sbjct: 203 GYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQ-KGCQ 261

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            +  +Y+ LI    +  R +   K+ A+M+      +  TY  +I     + +  E  + 
Sbjct: 262 RNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNL 321

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+ M E  GC P++ T   +I        +++  K  +E +  G+   + T N L   Y 
Sbjct: 322 FNEMKEK-GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + GM D    ++D M+     P   TYN +I    K   + K      KM  R + P+ I
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLI 440

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL+    K   +     +L  +  + ++ D   ++  I    + G VE+ G LF ++
Sbjct: 441 TYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           K +    + + +  +I  Y  +G  + A +L  +M+
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERML 536



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 174/430 (40%), Gaps = 53/430 (12%)

Query: 71  KKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP 130
           K Y ++   P + +LD     +   L+ ++  +L +  W +    +  KL+  L     P
Sbjct: 19  KPYSSIASLPQILSLD----SEPVDLSAQLLSILSRPNWQKH--PSLRKLLPSL----TP 68

Query: 131 EQASLLFE--------------VMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTI 172
              S LF               + L  G K +V  Y+++++   ++ LL  A     S I
Sbjct: 69  SHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMI 128

Query: 173 NDMKSVSDC------------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
               S+ D                   KP +  Y+ ++ S +KF   D ++ +  E+   
Sbjct: 129 KSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNN 188

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I  +  T+N +++GY K     E E   S +V++G  HPD FT  S+I  +  +  ++ 
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAG-LHPDTFTYTSLILGHCRNKGVDN 247

Query: 275 MEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
               Y  F +M   G + +  +   L      AG  ++   +   M +    PTV TY +
Sbjct: 248 A---YEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I     +G   +    F +MK +G +PN  TY  L+    K   + +   +L ++    
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +I     +N +I  Y + G ++   E+   M+   C P+  T+  +I           A 
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 452 NLENKMIAMK 461
            L NKM+  K
Sbjct: 425 ALLNKMLERK 434



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 146/343 (42%), Gaps = 20/343 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K K+ ++AS L   ML+ G+KP+V  YT L+    + G  D A    N M
Sbjct: 546 TYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHM 605

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S+   +PDV TY+  + +       + ++ ++A+M+  GI    VTY  +IDGY +   
Sbjct: 606 VSLGY-QPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMI------------------SAYGNSGNIEKMEK 277
                     MV++G C P ++ ++ +I                   +  N+   E   K
Sbjct: 665 THRAFDFLKCMVDTG-CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALK 723

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            + +    G   D+     L   + +    ++ + ++  M++R   P+   YN +++   
Sbjct: 724 LFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 783

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G   +       M   G+ P   +Y  LV      G   K  ++   + +     D  
Sbjct: 784 KLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEV 843

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +  +I    +   V++  EL   M+E+ C P+ +T++ +I+ 
Sbjct: 844 AWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 23/308 (7%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           + E +K   +  ALK+F  +     YQ    T+T  +         E+   +   M  +G
Sbjct: 586 IGEMLKDGAFDHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG 644

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR---- 200
           + P +  YT L+  Y + GL   AF  +  M   + CKP +Y  SILIK+ +  +R    
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD-TGCKPSLYIVSILIKNLSHENRMKET 703

Query: 201 --------------FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
                         +++  K+  +M   G       Y  +I G+ + ++ EE +     M
Sbjct: 704 RSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHM 763

Query: 247 VESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
            E G     DI+  NS++      G   +  +  +     G+   +++  +L       G
Sbjct: 764 KERGMSPSEDIY--NSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEG 821

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             +K ++V   +    +    V + ++I+   K   +++  E    M+ +G +PN +TY 
Sbjct: 822 SNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYS 881

Query: 366 SLVSAYSK 373
            L+    +
Sbjct: 882 LLIEGLER 889


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 177
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 178 ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y T
Sbjct: 63  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTT 122

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 241

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               ++M++RG++PNSITY +++S + KAG + +   + +++ +S V +D   +  +I A
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YEKAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 164/362 (45%), Gaps = 39/362 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 50  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 109

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +Y+ L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 110 T-AGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 168

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---T 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM  K  +Q   T
Sbjct: 169 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVT 224

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GKAG +++    F+K++
Sbjct: 225 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLR 284

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-------------------- 393
             G++ + + Y +++ AY KAGL+     +L ++++ D I                    
Sbjct: 285 SSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATY 344

Query: 394 -----------LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
                       D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 345 VFRQAIDAGEVRDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYG 404

Query: 443 AL 444
            L
Sbjct: 405 KL 406



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 10  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  +   L   Y 
Sbjct: 70  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYV 128

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 129 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 188

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 189 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +   G  + A  L  K+
Sbjct: 249 QNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKL 283



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 81/174 (46%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
               K    F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 162/346 (46%), Gaps = 5/346 (1%)

Query: 117 FTKLMVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   +++G C++ +  S   +F+ M   G + +   YT L+        +DEA      
Sbjct: 254 FTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVK 313

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK   DC P V TY++LIK+     R      ++ EM   GI+ +  TY  +ID      
Sbjct: 314 MKD-DDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQC 372

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K E+       M+E G   P++ T N++I+ Y   G IE             ++ + +T 
Sbjct: 373 KLEKARELLGQMLEKG-LMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTY 431

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y +  ++  M  V++ M +R   P VVTYN +I+   ++G+ +        M  
Sbjct: 432 NELIKGYCKRNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMND 490

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ P+  TY S++ +  K+  + +   +   +E  DVI +   +  +I  Y +AG V +
Sbjct: 491 RGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNE 550

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              +   M  ++C+P+++TF  +I      G  + A  LE KM+ +
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKI 596



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 166/382 (43%), Gaps = 41/382 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T L+  L   ++ ++A  LF  M  D   P+V  YT L+ A   S    EA + + +M+
Sbjct: 291 YTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEME 350

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                KP+++TY++LI S     + +   ++L +M   G+  + +TYN +I+GY K    
Sbjct: 351 E-KGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+       M ES    P+  T N +I  Y    N+ K     N+     V  D+ T N 
Sbjct: 410 EDALDVVELM-ESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L     R+G +D    ++  M  R   P   TY  +I++  K+  +E+  + F  ++ + 
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKD 527

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV---- 412
           + PN + Y +L+  Y KAG + +   +L ++ + + + ++  FN +I      G +    
Sbjct: 528 VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEAT 587

Query: 413 ---EKMGEL----------------------------FLTMKERHCVPDNITFATMIQAY 441
              EKM ++                            F  M      PD  T+ T IQ Y
Sbjct: 588 LLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 442 NALGMTEAAQNLENKMIAMKEN 463
              G  + A+++  K   MKEN
Sbjct: 648 CREGRLQDAEDMVAK---MKEN 666



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 158/345 (45%), Gaps = 3/345 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +++  +    T+T L+  L    + E+A  L   ML  GL P+V  Y AL++ Y + G++
Sbjct: 350 EEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A   +  M+S  + +P+  TY+ LIK   K +    +  +L +M    +    VTYN+
Sbjct: 410 EDALDVVELMES-RNLRPNTRTYNELIKGYCKRNVHKAM-GVLNKMLERKVLPDVVTYNS 467

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +IDG  ++  F+      S M + G   PD +T  SMI +   S  +E+    ++     
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLV-PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            V  ++     L   Y +AG  ++   +++ M  +   P  +T+N +I      G +++ 
Sbjct: 527 DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEA 586

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               +KM    ++P   T   L+    K G         +Q+ +S    D   +   I  
Sbjct: 587 TLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQT 646

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           Y + G ++   ++   MKE    PD  T++++I+ Y  LG T +A
Sbjct: 647 YCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSA 691



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 153/345 (44%), Gaps = 5/345 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ K++    K    E+A+    +++  GL P    YT+L+  Y Q   LD AF    +M
Sbjct: 220 TYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM 279

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-GKAK 234
             +  C+ +   Y+ LI       R D    +  +M       +  TY  +I    G  +
Sbjct: 280 -PLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSER 338

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K E +  +    +E  G  P+I T   +I +  +   +EK  +   +    G+  ++ T 
Sbjct: 339 KSEAL--NLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITY 396

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y + GM +    V++ M+ R   P   TYN +I+ + K  ++ K      KM  
Sbjct: 397 NALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLE 455

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           R + P+ +TY SL+    ++G       +L  + +  ++ D   +  +I +  ++  VE+
Sbjct: 456 RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEE 515

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             +LF +++++  +P+ + +  +I  Y   G    A  +  KM++
Sbjct: 516 ACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS 560



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 164/412 (39%), Gaps = 68/412 (16%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML--------------SDG 144
           ++F +L +  W+  +C +   ++  +     P   S LF + L              +  
Sbjct: 65  RLFSILSKPNWH--KCPSLKSMVPAIS----PSHVSSLFSLDLDPKTALNFSHWISQNPR 118

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            K SV  Y +L++    +G +   F     M    D   D      L +   K   F+L 
Sbjct: 119 YKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVADTLFVLDLCRKMNKDESFELK 178

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K++       I C    YNT+++   +    +EM+  +  M+E   C P+I+T N M++
Sbjct: 179 YKLI-------IGC----YNTLLNSLARFGLVDEMKQVYMEMLEDKVC-PNIYTYNKMVN 226

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD---------------- 308
            Y   GN+E+  ++ +     G+  D  T   L   Y +    D                
Sbjct: 227 GYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRR 286

Query: 309 ----------------KMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                           ++   MD    M+    +PTV TY ++I+    +    +     
Sbjct: 287 NEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLV 346

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K+M+ +G+KPN  TY  L+ +      + K   +L Q+    ++ +   +N +I+ Y + 
Sbjct: 347 KEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKR 406

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           G +E   ++   M+ R+  P+  T+  +I+ Y    + +A   L NKM+  K
Sbjct: 407 GMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVL-NKMLERK 457



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 27/312 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L K K+ E+A  LF+ +    + P+V +YTAL+  Y ++G ++EA   +  M
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 176 KSVSDCKPDVYTYSILIKS-CT--KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            S  +C P+  T++ LI   CT  K     L+E+   +M  + ++ +  T   +I    K
Sbjct: 559 LS-KNCLPNSLTFNALIHGLCTDGKLKEATLLEE---KMVKIDLQPTVSTDTILIHRLLK 614

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
              F+     F  M+ SG   PD  T  + I  Y   G ++  E    +    GV  D+ 
Sbjct: 615 DGDFDHAYRRFQQMLSSGT-KPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLF 673

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----TFGKAGHIEK--- 344
           T + L K YG  G  +    V+  M      P+  T+  +I+      +GK    E    
Sbjct: 674 TYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVC 733

Query: 345 -----ME-----EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
                ME     E  +KM   G+ PN+ +Y  L+    + G +   + +   ++  + I 
Sbjct: 734 VMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGIS 793

Query: 395 DTPF-FNCIISA 405
            +   FN ++S 
Sbjct: 794 PSELVFNALLSC 805



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 113/274 (41%), Gaps = 19/274 (6%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T  +    +  + + A  +   M  +G+ P +  Y++L+  YG  G  + AF  +  
Sbjct: 638 HTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKR 697

Query: 175 MKSVSDCKPDVYTYSILIKS----------------C--TKFHRFDLIEKILAEMSYLGI 216
           M   + C+P  +T+  LIK                 C  +    FD++ ++L +M   G+
Sbjct: 698 MHD-TGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGV 756

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             +A +Y  ++ G  +       E  F  M +  G  P     N+++S         +  
Sbjct: 757 TPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAA 816

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K  ++   +G    +++  IL     + G  ++  SV   + +  ++   + + I+I+  
Sbjct: 817 KVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGV 876

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           GK G +E   E F  M+  G   +S TY  L+  
Sbjct: 877 GKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 165/334 (49%), Gaps = 4/334 (1%)

Query: 127  CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
            CKQ +  +A  L +   S G+     +Y +L+       L+D A     +MK +  C PD
Sbjct: 731  CKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG-CGPD 789

Query: 185  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             +TY++L+ +  K  R + + K+  EM   G E + VTYNTII G  K+++ E+    + 
Sbjct: 790  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 849

Query: 245  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             ++ S G  P   T   ++     +G IE  E  +NE    G KA+    NIL   +  A
Sbjct: 850  NLM-SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIA 908

Query: 305  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            G  +K+  +   M  +   P + +Y I+I+T  KAG +     YF+++   G++P+ ITY
Sbjct: 909  GNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITY 968

Query: 365  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
              L+    K+  + +  S+  +++   ++ +   +N +I   G+AG   + G+++  +  
Sbjct: 969  NLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT 1028

Query: 425  RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +   P+  T+  +I+ Y+  G T++A     +MI
Sbjct: 1029 KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMI 1062



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 153/324 (47%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  ++ VM+ DG+ PSV  Y+ L+ A+G+   ++     + +M
Sbjct: 162 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 221

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    KP+VY+Y+I I+   +  RFD   +ILA+M   G +   +T+  +I     A +
Sbjct: 222 EA-HGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGR 280

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M +S    PD  T  +++  +G++G+ + + + +N     G   ++    
Sbjct: 281 ISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYT 339

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  + G   +   + D M+++   P   +YN +I  F KA       E FK M   
Sbjct: 340 AVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH 399

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G KPN  T+   ++ Y K+G  +K       +++  ++ D    N ++    ++G +   
Sbjct: 400 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMA 459

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
             +F  +K     PD IT+  MI+
Sbjct: 460 KRVFHELKAMGVSPDTITYTMMIK 483



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 166/377 (44%), Gaps = 35/377 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV  GK +  E    L   M + G+KP+V  YT  +   GQ+   DEA+  +  
Sbjct: 196 RTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAK 255

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--- 231
           M++   CKPDV T+++LI+      R    + +  +M     +   VTY T++D +G   
Sbjct: 256 MEN-EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNG 314

Query: 232 ------------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLN 260
                       KA  + +   +++A++++                    G  P+ ++ N
Sbjct: 315 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 374

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+IS +  +       + +   ++ G K +  T  +    YG++G   K     + M+ +
Sbjct: 375 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 434

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV  N V+    K+G +   +  F ++K  G+ P++ITY  ++   SKA    + 
Sbjct: 435 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 494

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I   +  ++ + D    N +I    +AG  ++   +F  +KE +  P + T+ T++  
Sbjct: 495 VKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAG 554

Query: 441 YNALGMTEAAQNLENKM 457
               G  +   +L  +M
Sbjct: 555 LGREGKVKEVMHLLEEM 571



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 152/323 (47%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G     +    ++  M +DG   +V  YTA++ A  Q G + EA    ++M
Sbjct: 302 TYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 361

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P+ Y+Y+ LI    K  RF    ++   M   G + +  T+   I+ YGK+ +
Sbjct: 362 KQ-KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGE 420

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    +  M +S G  PD+   N+++     SG +   ++ ++E   MGV  D  T  
Sbjct: 421 SIKAIQRYELM-KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 479

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K   +A  +D+   +   M +    P V+  N +I+T  KAG  ++    F ++K  
Sbjct: 480 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEM 539

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P   TY +L++   + G + +V  +L ++ +S+   +   +N I+    + G V   
Sbjct: 540 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 599

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++  +M  + C+PD  ++ T+I
Sbjct: 600 LDMLYSMTTKGCIPDLSSYNTVI 622



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 2/355 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+Q  +A   TF  +   LG       A +   VM   G+  +   Y  LV    +SG  
Sbjct: 117 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 176

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA      M  V    P V TYS+L+ +  K    + +  +L EM   G++ +  +Y  
Sbjct: 177 REALEVYRVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 235

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            I   G+AK+F+E     + M E+ GC PD+ T   +I    ++G I   +  + +    
Sbjct: 236 CIRVLGQAKRFDEAYRILAKM-ENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 294

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
             K D  T   L   +G  G    +  + + M+   +   VV Y  VI+   + G + + 
Sbjct: 295 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 354

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E F +MK +G+ P   +Y SL+S + KA        + + ++      +       I+ 
Sbjct: 355 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 414

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           YG++G+  K  + +  MK +  VPD +    ++      G    A+ + +++ AM
Sbjct: 415 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 469



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 2/262 (0%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
             ++ Y++   T+  ++  L K ++ EQA  L+  ++S G  P+   Y  L+    ++G +
Sbjct: 817  HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 876

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            ++A +  N+M     CK +   Y+IL+         + +  +  +M   GI     +Y  
Sbjct: 877  EDAENLFNEMLEYG-CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTI 935

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            IID   KA +  +  + F  ++E G   PD+ T N +I   G S  +E+    +NE    
Sbjct: 936  IIDTLCKAGQLNDGLTYFRQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 994

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G+  ++ T N L    G+AG   +   + + +  + + P V TYN +I  +  +G  +  
Sbjct: 995  GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1054

Query: 346  EEYFKKMKHRGMKPNSITYCSL 367
               + +M   G  PNS TY  L
Sbjct: 1055 YAAYGRMIVGGCLPNSSTYMQL 1076



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 156/409 (38%), Gaps = 38/409 (9%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  +   A +IF  L++    +    T+  L+  LG+  + ++   L E M    
Sbjct: 517 IDTLYKAGRGDEAWRIFYQLKEMNL-EPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 575

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P++  Y  ++    ++G +++A   +  M +   C PD+ +Y+ +I    K  R++  
Sbjct: 576 YPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSSYNTVIYGLVKEERYNEA 634

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------------------------ME 240
             I  +M  + I   A T  TI+  + K    +E                        ME
Sbjct: 635 FSIFCQMKKVLIPDYA-TLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLME 693

Query: 241 S-----------SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                        F+ ++ S G   D F L  +I          +  +   +F   GV  
Sbjct: 694 GILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSL 753

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                N L        + D    +   M++    P   TYN++++  GK+  IE+M +  
Sbjct: 754 KTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQ 813

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  +G +   +TY +++S   K+  + +   +   + +         +  ++    +A
Sbjct: 814 EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 873

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           G +E    LF  M E  C  +   +  ++  +   G TE   +L   M+
Sbjct: 874 GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 922



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + N M+      G +  M + ++      VKA++ T   +    G  G        +  M
Sbjct: 92  SCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 151

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++        TYN ++    K+G   +  E ++ M   G+ P+  TY  L+ A+ K   +
Sbjct: 152 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 211

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +LR++E   V  +   +   I   GQA   ++   +   M+   C PD IT   +
Sbjct: 212 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVL 271

Query: 438 IQAYNALGMTEAAQNLENKM 457
           IQ     G    A+++  KM
Sbjct: 272 IQVLCDAGRISDAKDVFWKM 291



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 7/210 (3%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
            ++++ SA G +  +E+      +  +    A    +  L + +GR G    M  V D M
Sbjct: 60  VIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVG---DMAEVFDVM 116

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           Q++     V T+  +    G  G +         MK  G+  N+ TY  LV    K+G  
Sbjct: 117 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 176

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   + R +    V+     ++ ++ A+G+  DVE +  L   M+     P+  ++   
Sbjct: 177 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 236

Query: 438 IQAYNALGMTEAAQNLENKMIAMKENSGKK 467
           I+        + A  +  KM    EN G K
Sbjct: 237 IRVLGQAKRFDEAYRILAKM----ENEGCK 262


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 2/308 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E  + +++ M+++G  P V  ++ LV+   + GL   A   +NDM +   CKP++ TY+I
Sbjct: 364 EATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDA-KGCKPNLNTYTI 422

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K  + +    IL EM   G   + V YN +I    K  K  E    F  M  S 
Sbjct: 423 LIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEM-SSK 481

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           GC PDIFT NS+I        +E     Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M  R      +TYN +I+   K G +EK    F++M  +G+ P+ IT   L++ 
Sbjct: 542 LKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILING 601

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +  AG +      +R + +     D   +N +I+   + G +++   LF  ++     PD
Sbjct: 602 FCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPD 661

Query: 431 NITFATMI 438
           +IT+ T+I
Sbjct: 662 SITYNTLI 669



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 165/374 (44%), Gaps = 32/374 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  +M  L    + + A LL   M   G  P+  +Y  L+ A  +   +DEA   + +M
Sbjct: 212 TFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEM 271

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILA------EMSY------LGIEC- 218
             +  C PDV T++ +I    + +R      L+++++       +M+Y      L   C 
Sbjct: 272 -FLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR 330

Query: 219 --------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                         + V +NT+++G+ +  +  E  +     + + G  PD+FT +++++
Sbjct: 331 IDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVN 390

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G      +  N+ +  G K ++ T  IL   + + G  ++   ++  M  + F  
Sbjct: 391 GLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSL 450

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V YN +I    K G I +  + F +M  +G KP+  T+ SL+    +   +    ++ 
Sbjct: 451 NTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALY 510

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           R +    VI ++  FN +I A+ + G++++  +L   M  R C  D IT+  +I+A    
Sbjct: 511 RDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKT 570

Query: 445 GMTEAAQNLENKMI 458
           G  E    L  +MI
Sbjct: 571 GAVEKGLGLFEEMI 584



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/369 (18%), Positives = 157/369 (42%), Gaps = 12/369 (3%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS---DGLKPSVDV 151
           + +++IF     Q+ Y   C +F+   +++ K        ++  ++L    +G+     +
Sbjct: 85  ETSMEIFKWAGAQKGY---CHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESL 141

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  ++  YG++GL  +A   + DMK V  C+P   +Y++++      +   +   +  +M
Sbjct: 142 FILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDM 201

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+  +  T+  ++       + +        M + G C P+     ++I A      
Sbjct: 202 LSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHG-CVPNSMIYQTLIDALSKRDR 260

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++  K   E  LMG   D+ T N +   + R     +   ++D M  + F P  +TY  
Sbjct: 261 VDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGY 320

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS-ILRQVENS 390
           ++    K   I++ +    K+      PN + + +LV+ + + G + +  + +  ++ N+
Sbjct: 321 LMHGLCKTCRIDEAQALLSKVP----GPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINN 376

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             + D   F+ +++   + G      EL   M  + C P+  T+  +I  +   G  E A
Sbjct: 377 GYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEA 436

Query: 451 QNLENKMIA 459
             +  +M+ 
Sbjct: 437 GLILREMLT 445


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 155/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + KAG + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 164/362 (45%), Gaps = 39/362 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +Y+ L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 107 T-AGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---T 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM  K  +Q   T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GKAG +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLR 281

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-------------------- 393
             G++ + + Y +++ AY KAGL+     +L ++++ D I                    
Sbjct: 282 SSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATY 341

Query: 394 -----------LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
                       D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVRDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 AL 444
            L
Sbjct: 402 KL 403



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  +   L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +   G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKL 280



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  +  +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF  M   G+KP V  Y  ++ A  ++  +D+A   +  M +    +PD  TYS +
Sbjct: 283 KACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM-TTDGAQPDTVTYSCM 341

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R     K+  EM   G+  + VT N+ +    K  + +E    F +M   G 
Sbjct: 342 IHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGH 401

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PDIF+  +++  Y + G    M   +N     G+ A+     IL  +Y + GM D   
Sbjct: 402 -KPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAM 460

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +   MQ++   P VVTY+ VI TF + G +    E F +M  RG++PN+  Y S++  +
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF 520

Query: 372 SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAY---GQAGDVEKMGELFLTMKERHC 427
              G ++K   ++ ++ N  +   D  FF+ +I++    G+  D   + +L   + ER  
Sbjct: 521 CMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGER-- 578

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKM 457
            P  ITF ++I  Y  +G  + A  + + M
Sbjct: 579 -PGVITFNSLIDGYCLVGKMDKAFKILDAM 607



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 7/370 (1%)

Query: 96  LALKIFG-LLRQQQWYQARCQTFTKLMVMLGKC---KQPEQASLLFEVMLSDGLKPSVDV 151
           LAL +F  + R++   Q    TF    +++  C   ++P+    LF  +L  GLK     
Sbjct: 135 LALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQIT 194

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
              L+     +   +EA + +    S   C P+  +YSI++K+            +L  M
Sbjct: 195 ANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMM 254

Query: 212 SYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +  G  CS   V Y+T+I G+    +  +  S F  M   G   PD+ T N +I A   +
Sbjct: 255 AKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQG-VKPDVVTYNLIIDALCKA 313

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             ++K E    +    G + D  T + +   Y   G   +   +   M+KR   P +VT 
Sbjct: 314 RAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTC 373

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N  + +  K G  ++  E+F  M  +G KP+  +YC+L+  Y+  G    +  +   +++
Sbjct: 374 NSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKS 433

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           + +  +   F  +I AY + G V+    +F  M+++   PD +T++T+I  ++ +G    
Sbjct: 434 NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTD 493

Query: 450 AQNLENKMIA 459
           A    N+M+A
Sbjct: 494 AMEKFNQMVA 503



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 159/385 (41%), Gaps = 22/385 (5%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   + ++  L L +FG + +      +    T L  +    +  E  ++L   M   G
Sbjct: 164 MDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELG 223

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILI----------K 193
             P+   Y+ ++ A   + +   A   +  M K    C PDV  YS +I          K
Sbjct: 224 CVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGK 283

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
           +C+ FH          EM+  G++   VTYN IID   KA+  ++ E     M   G   
Sbjct: 284 ACSLFH----------EMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGA-Q 332

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD  T + MI  Y   G +++  K + E    G+  +I T N    S  + G   +    
Sbjct: 333 PDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEF 392

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            D M  +   P + +Y  ++  +   G    M   F  MK  G+  N   +  L+ AY+K
Sbjct: 393 FDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAK 452

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G++     I  +++   V  D   ++ +IS + + G +    E F  M  R   P+   
Sbjct: 453 RGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 434 FATMIQAYNALGMTEAAQNLENKMI 458
           ++++IQ +   G    A+ L ++MI
Sbjct: 513 YSSIIQGFCMHGGLVKAKELVSEMI 537



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 157/358 (43%), Gaps = 38/358 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M S+G+  +  V+T L+ AY + G++D+A     +M+      PDV TYS +I + 
Sbjct: 427 LFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQ-QGVSPDVVTYSTVISTF 485

Query: 196 TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           ++  R  D +EK   +M   GI+ +   Y++II G+       + +   S M+  G   P
Sbjct: 486 SRMGRLTDAMEK-FNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI   +S+I++    G +      ++    +G +  + T N L   Y   G  DK   ++
Sbjct: 545 DIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKIL 604

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M+     P +VTYN +++ + K G I      F++M+ +G+KPN++TY  +++   +A
Sbjct: 605 DAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 375 GLIMKVDS-----------------------------------ILRQVENSDVILDTPFF 399
           G  +                                       + +++   +V       
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +I+A  +    E+  ELF T+     +P+  T+  MI      G  E A N+ + M
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSM 782



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 157/391 (40%), Gaps = 44/391 (11%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +Q  +    T+  ++  L K +  ++A L+   M +DG +P    Y+ ++  Y   G L 
Sbjct: 293 RQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLK 352

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA     +MK      P++ T +  + S  K  R     +    M+  G +    +Y T+
Sbjct: 353 EAAKMFREMKK-RGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTL 411

Query: 227 IDGYGKAKKFEEMESSFSAMVESG---GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           + GY     F +M   F++M  +G    CH  +FT+  +I AY   G ++     + E  
Sbjct: 412 LHGYASEGCFADMIGLFNSMKSNGIAANCH--VFTI--LIHAYAKRGMVDDAMLIFTEMQ 467

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             GV  D+ T + +  ++ R G         + M  R   P    Y+ +I+ F   G + 
Sbjct: 468 QQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLV 527

Query: 344 KMEEYFKKMKHRGM------------------------------------KPNSITYCSL 367
           K +E   +M ++G+                                    +P  IT+ SL
Sbjct: 528 KAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSL 587

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  Y   G + K   IL  +E   V  D   +N ++  Y + G +     LF  M+ +  
Sbjct: 588 IDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGV 647

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            P+ +T+  M+      G T AA+   ++MI
Sbjct: 648 KPNTVTYGIMLAGLFRAGRTVAARKKFHEMI 678



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 128/301 (42%), Gaps = 16/301 (5%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +   A  +F++    G +P V  + +L+  Y   G +D+AF  ++ M+
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAME 608

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            V   +PD+ TY+ L+    K  R +    +  EM   G++ + VTY  ++ G  +A + 
Sbjct: 609 VVG-VEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRT 667

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYG-------NSGNIEKMEKWYNEFNLMGVKA 289
                 F  M+ESG            +S YG        +   ++    + +   M VK 
Sbjct: 668 VAARKKFHEMIESG--------TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF 719

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            I  LN +  +  +    ++ + +   +      P   TY ++I    K G +E     F
Sbjct: 720 SITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMF 779

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             M+  G+ P S     ++    + G I K  + L +V+   ++L+    + ++S + + 
Sbjct: 780 SSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRK 839

Query: 410 G 410
           G
Sbjct: 840 G 840


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 6/348 (1%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T+T ++  L K  +   A+ LF+ M   G +P+V  Y  L+ +  +  L++EA  
Sbjct: 197 QPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALD 256

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             + MK+     PD++TY+ LI+    F R+     +L EM+ L I  +  T+N ++D  
Sbjct: 257 IFSYMKA-KRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  K  E +  F  M E G   PD+ T +S++  Y     I +  K ++     G K D
Sbjct: 316 CKEGKVSEAQGVFKTMTEMG-VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPD 374

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             + NIL K Y +A   D+ + + + M  +   P  V YN +I    + G + + ++ FK
Sbjct: 375 AFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFK 434

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M   G  P+  TY  L+  + K G + K   + R ++++ +  D   +N +I A  + G
Sbjct: 435 NMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFG 494

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAAQNLE 454
           +++   +LF  +  +  +P+   + T+I      G+     EA +N+E
Sbjct: 495 NLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNME 542



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 155/356 (43%), Gaps = 36/356 (10%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  ML     P +  +T L+SA  + G    A  +++    ++   PD+YT SILI   +
Sbjct: 82  FNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFS 141

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
              R DL   + ++M  LG++  AVT+NT+I+G  K  KF +    F    E+ GC P +
Sbjct: 142 HLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF-EASGCQPTV 200

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T  ++I+     G        + +    G + ++ T NIL  S  +  + ++   +  +
Sbjct: 201 YTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSY 260

Query: 317 MQ-KRF----------------------------------FFPTVVTYNIVIETFGKAGH 341
           M+ KR                                     P + T+N++++   K G 
Sbjct: 261 MKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGK 320

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + + +  FK M   G++P+ +TY SL+  YS    I++   +   +       D   +N 
Sbjct: 321 VSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNI 380

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I  Y +A  +++  +LF  M  +   PDN+ + T+I     LG    AQ+L   M
Sbjct: 381 LIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    TF  L+  L K  +  QA   F+   + G +P+V  YT +++   + G    A  
Sbjct: 162 QPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAG 221

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               M+  + C+P+V TY+ILI S  K    +    I + M    I     TYN++I G 
Sbjct: 222 LFKKMEE-AGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGL 280

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
              ++++E  +  + M  S    P+IFT N ++ A    G + + +  +     MGV+ D
Sbjct: 281 CNFRRWKEASALLNEMT-SLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPD 339

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T + L   Y       + R + D M  +   P   +YNI+I+ + KA  I++ ++ F 
Sbjct: 340 VVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFN 399

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M H+G+ P+++ Y +L+    + G + +   + + + ++  + D   ++ ++  + + G
Sbjct: 400 EMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG 459

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            + K   LF  M+  +  PD   +  +I A    G  + A+ L
Sbjct: 460 YLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKL 502



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 13/351 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K K    AL IF  ++ ++       T+  L+  L   ++ ++AS L   M S  
Sbjct: 242 IDSLCKDKLVNEALDIFSYMKAKR-ISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 145 LKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           + P++  +  LV A  + G + EA   F T+ +M      +PDV TYS L+   +   R 
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMG----VEPDVVTYSSLMYGYSL--RM 354

Query: 202 DLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +++E  K+   M   G +  A +YN +I GY KAK+ +E +  F+ M+  G   PD    
Sbjct: 355 EIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG-LTPDNVNY 413

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N++I      G + + +  +   +  G   D+ T ++L   + + G   K   +   MQ 
Sbjct: 414 NTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS 473

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
            +  P +  YNI+I+   K G+++   + F ++  +G+ PN   Y ++++   K GL+ +
Sbjct: 474 TYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDE 533

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
                R +E      D   +N II  + Q  D  +  +L   M++R  V +
Sbjct: 534 ALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAE 584



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%)

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           S S  +E  G  PDI+TL+ +I  + +   ++     +++   +G++ D  T N L    
Sbjct: 116 SLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGL 175

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G + +     D  +     PTV TY  +I    K G        FKKM+  G +PN 
Sbjct: 176 CKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNV 235

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  L+ +  K  L+ +   I   ++   +  D   +N +I         ++   L   
Sbjct: 236 VTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNE 295

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M   + +P+  TF  ++ A    G    AQ +   M  M
Sbjct: 296 MTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEM 334



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K+     A ++F ++ Q  + +     +  L+  + K    + A  LF  +   G
Sbjct: 452 LDGFCKEGYLGKAFRLFRVM-QSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQG 510

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           L P+V +YT +++   + GLLDEA     +M+    C PD ++Y+++I+   ++      
Sbjct: 511 LLPNVQIYTTIINNLCKEGLLDEALEAFRNMEG-DGCPPDEFSYNVIIRGFLQYKDESRA 569

Query: 205 EKILAEMSYLGIECSAVT 222
            +++ EM   G    A T
Sbjct: 570 AQLIGEMRDRGFVAEAGT 587


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 163/335 (48%), Gaps = 6/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK    + A    + M  D +   + +Y+ L+    +     +A S  + +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           KS S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  Y + KK
Sbjct: 61  KS-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 119

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N
Sbjct: 120 FLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 178

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK     ++M+ R
Sbjct: 179 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSR 238

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V   
Sbjct: 239 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA 298

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 299 KRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 329



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 154/307 (50%), Gaps = 4/307 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAE 210
           Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   +     I + 
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQ--DQVPGDLVLYSNLIELSRKLCDYSKAISIFSR 59

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +   G     V YN +I+ +GKAK F E  S  S M ++ G  P+  + +++++ Y  + 
Sbjct: 60  LKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLTMYVENK 118

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
              +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P VV+YN
Sbjct: 119 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 178

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K +++++++++ 
Sbjct: 179 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSR 238

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+   A
Sbjct: 239 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA 298

Query: 451 QNLENKM 457
           + L +++
Sbjct: 299 KRLLHEL 305



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 176/377 (46%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  + S G  P +  Y A+++ +G++ L  EA S I++MK
Sbjct: 37  YSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 96

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 97  T-AGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 155

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 156 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 211

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 212 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 271

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
             G++ + I + +++ AY +AGL+     +L +++  D I  DT     I++  G+    
Sbjct: 272 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAGAGRIEEA 329

Query: 409 ---------AGDVEKMG-------------------ELFLTMKERHCVPDNITFATMIQA 440
                    AG+V+ +                    E+F  M+     PD+   A ++ A
Sbjct: 330 TYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNA 389

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   + A ++  +M
Sbjct: 390 YGKLQEFDKANDVYMEM 406



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 128/271 (47%), Gaps = 1/271 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S FS +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            +S G  PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y     
Sbjct: 61  -KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 119

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN ++Y +
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 179

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+  Y  A L  +   + R ++  ++  +   +N +I  YG+  + EK   L   M+ R 
Sbjct: 180 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 239

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             P++IT++T+I  +  +G  + A  L  K+
Sbjct: 240 IEPNSITYSTIISIWGKVGKLDRAAMLFQKL 270


>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 426

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
           GL P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   GLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREJK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  +I AY +A
Sbjct: 243 QEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 163/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I +MK
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  J       T N +ID YG+    
Sbjct: 107 A-AGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 282 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATY 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I    +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 402 KLQEFDKANDVYMEM 416



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RQRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + RG+ P+  TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RQRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            K   +F  +K     PD + +  MI  +    +   A++L  +M A
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA 107


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 174/386 (45%), Gaps = 46/386 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           +++ ++  L +  + ++A  L   M+  S G  P+V  Y  ++  + + G + +A +  +
Sbjct: 192 SYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFH 251

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M       PDV TYS  I +  K    D  E +L +M   G E   VTYN +I GY   
Sbjct: 252 EMMQ-QGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSIL 310

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISA---------------------------- 265
            +++E    F  M   G   PDIFT NS +S+                            
Sbjct: 311 GQWKETAGMFREMTRRG-LMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVT 369

Query: 266 -------YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
                  Y   G +  M   +N     G+ AD    NIL  +YG+ GM D+   +   MQ
Sbjct: 370 YSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQ 429

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +R   P   TY  VI  F + G +    + F +M   G+KP++I Y SL+  +   G ++
Sbjct: 430 ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLV 489

Query: 379 KVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF---LTMKERHCVPDNITF 434
           K   ++ ++ +  +   +T FFN II++  + G V +  ++F   + + ER   PD ITF
Sbjct: 490 KAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGER---PDVITF 546

Query: 435 ATMIQAYNALGMTEAAQNLENKMIAM 460
            ++I  Y  +G  E A  + + MI++
Sbjct: 547 NSLIDGYGLVGKMEKAFGVLDAMISV 572



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 166/349 (47%), Gaps = 7/349 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM    +  +P     LF   L  GLK  V V   L+     +   D+A + +   
Sbjct: 121 TYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHR 180

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                 +PD  +YS ++KS  +  R     DL+  ++ +    G   + V+YNT+I G+ 
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSG--GCSPNVVSYNTVIHGFF 238

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +  +  +  + F  M++ G   PD+ T +S I A   +  ++K E    +    G + D 
Sbjct: 239 REGEVSKACNLFHEMMQQG-VVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDK 297

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N +   Y   G + +   +   M +R   P + T N  + +  K G  ++  E+F  
Sbjct: 298 VTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDS 357

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M  +G KP+ +TY  L+  Y+  G ++ + ++   +E + ++ D   +N +I AYG+ G 
Sbjct: 358 MAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGM 417

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +++   +F  M+ER  +PD  T+ T+I A++ +G    A +  N+MIAM
Sbjct: 418 MDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAM 466



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 160/366 (43%), Gaps = 42/366 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M  +G+     VY  L+ AYG+ G++DEA      M+      PD +TY  +I + 
Sbjct: 389 LFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQE-RGVMPDAWTYGTVIAAF 447

Query: 196 TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           ++  R  D ++K   +M  +G++   + YN++I G+       + +   S M+  G   P
Sbjct: 448 SRMGRLADAMDK-FNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRP 506

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +    NS+I++    G + + +  ++    +G + D+ T N L   YG  G  +K   V+
Sbjct: 507 NTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 371
           D M      P VVTY+ +++ + + G I+     F++M  +G+KP +ITY  ++      
Sbjct: 567 DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFND 626

Query: 372 ----------------------SKAGLIM----------KVDSILRQVENSDVILDTPFF 399
                                 S  G+I+          +  ++ +++   +V  +    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAII 686

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I A  +    E+  ELF ++     VP+  T+  MI      G  E A N    M +
Sbjct: 687 NTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADN----MFS 742

Query: 460 MKENSG 465
           + E SG
Sbjct: 743 LMEKSG 748



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 4/286 (1%)

Query: 127 CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+    +A  +F++++  G +P V  + +L+  YG  G +++AF  ++ M SV   +PD
Sbjct: 519 CKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG-IEPD 577

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TYS L+    +  R D    +  EM   G++ + +TY  I+ G     +    +    
Sbjct: 578 VVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+ESG    DI T   ++     +   ++    + +   M VK +I  +N +  +  + 
Sbjct: 638 EMIESGTTM-DISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKV 696

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
              ++   + D +      P   TY ++I    K G +E+ +  F  M+  G  P+S   
Sbjct: 697 RKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLL 756

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            +++    + G I K  + L +V+   + L+    + ++S + + G
Sbjct: 757 NNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKG 802



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 112/260 (43%), Gaps = 2/260 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+   G   + E+A  + + M+S G++P V  Y+AL+  Y ++G +D+      +M
Sbjct: 545 TFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREM 604

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP   TY I++       R    +K+  EM   G      T   I+ G  +   
Sbjct: 605 LS-KGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNC 663

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  + F  +  +     +I  +N+MI A       E+  + ++  +  G+  +  T  
Sbjct: 664 DDEAIALFKKL-GAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYG 722

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++  +  + G  ++  ++   M+K    P+    N +I    + G I K   Y  K+  +
Sbjct: 723 VMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGK 782

Query: 356 GMKPNSITYCSLVSAYSKAG 375
            +   + T   ++S +S+ G
Sbjct: 783 TISLEASTASLMLSLFSRKG 802



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 39/246 (15%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K FG+L             T   ++ G C+  + +   +LF  MLS G+KP+   Y  ++
Sbjct: 561 KAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIIL 620

Query: 157 SAYGQSGLL-----------------------------------DEAFSTINDMKSVSDC 181
                 G                                     DEA +    + ++ + 
Sbjct: 621 HGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAM-NV 679

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K ++   + +I +  K  + +   ++   +S  G+  +A TY  +I    K    EE ++
Sbjct: 680 KFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADN 739

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            FS M E  GC P    LN++I      G I K   + ++ +   +  +  T +++   +
Sbjct: 740 MFSLM-EKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLF 798

Query: 302 GRAGMY 307
            R G Y
Sbjct: 799 SRKGKY 804



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 38/180 (21%)

Query: 318 QKRFFFPTVVTYNIVIET----------------FGKAG----------------HIEKM 345
           + R   PTV TYNI+++                 F K G                H ++ 
Sbjct: 111 RPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRS 170

Query: 346 EEYFKKMKHR----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFF 399
           ++    + HR    G++P++I+Y +++ +  +     +   +L  +  ++     +   +
Sbjct: 171 DDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSY 230

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I  + + G+V K   LF  M ++  VPD +T+++ I A       + A+ +  +MI+
Sbjct: 231 NTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMIS 290


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +PE A   F  +L  GL+  + +   L+  + ++   DEA   +  
Sbjct: 112 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLH 171

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGK 232
                 C PDV++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFK 231

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F  MV+  G  PD  T +S++ A   +  ++K E +  +    GV  +  
Sbjct: 232 EGDVNKACDLFKEMVQR-GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M+++   P VVT+N+++ +  K G I++  + F  M
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTM 350

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+  +Y  +++ Y+  G ++ +  +   +    +      FN +I AY   G +
Sbjct: 351 AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGML 410

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K   +F  M++    P+ +T+ T+I A   +G  + A    N+MI
Sbjct: 411 DKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P    Y+++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPNNWTYNNL 295

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    VT+N ++    K  K +E    F  M   G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +PD+F+ N M++ Y   G +  M   ++     G+   I T N+L K+Y   GM DK  
Sbjct: 356 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 414

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P V+TY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 415 IIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD   F+ II+   + G V     +F         P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVS 562



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 150/343 (43%), Gaps = 6/343 (1%)

Query: 115 QTFTKLMVMLGKCKQPE--QASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFS 170
             F+  +++   C Q +  QA  L  +M   G    P V  Y  ++  + + G +++A  
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACD 240

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
              +M       PD  TYS ++ +  K    D  E  L +M   G+  +  TYN +I GY
Sbjct: 241 LFKEMVQ-RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGY 299

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
               +++E    F  M       PD+ T N ++ +    G I++    ++   + G   D
Sbjct: 300 SSTGQWKEAVRVFKEM-RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPD 358

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + + NI+   Y   G    M  + D M      P + T+N++I+ +   G ++K    F 
Sbjct: 359 VFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFN 418

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M+  G+KPN +TY ++++A  + G +        Q+ +  V  D   ++C+I  +   G
Sbjct: 419 EMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 478

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            + K  EL   +       D + F+++I     LG    AQN+
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNI 521



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 152/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K +  ++A      M++ G+ P+   Y  L+  Y  +G   EA     +M
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV T+++L+ S  K+ +      +   M+  G      +YN +++GY     
Sbjct: 316 RRQS-ILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  P I T N +I AY N G ++K    +NE    GVK ++ T  
Sbjct: 375 LVDMTDLFDLML-GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYT 433

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + 
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 493

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM  + + + S+++   K G +M   +I     N  +      ++ ++  Y   G +EK 
Sbjct: 494 GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+++ + T++  Y  +G  +   +L  +M+
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 158/350 (45%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP+V  YT +++A  + G +D+A    N M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQM 455

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y  LI+           +++++E+   G+    V +++II+   K  +
Sbjct: 456 ID-QGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGR 514

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HP     + ++  Y   G +EK  + ++     G++ +     
Sbjct: 515 VMDAQNIFDLTVNVG-LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M ++   P+ + YNI+I+   +AG     +  F +M   
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  TY  ++    K     +   + +++   +V +D    N +I+   Q   VE+ 
Sbjct: 634 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 693

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 694 KDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 739



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 132/280 (47%), Gaps = 4/280 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TY+IL+  CT+ HR +L      ++   G+    +  N ++ G+ +AK+ +E    
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 168

Query: 243 FSAMVESGGCHPDIFTLNSMISAY---GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                   GC PD+F+ + ++ +    G SG  + + +   E   +    D+   N +  
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYNTVID 227

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            + + G  +K   +   M +R   P  VTY+ V+    KA  ++K E + ++M ++G+ P
Sbjct: 228 GFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLP 287

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N+ TY +L+  YS  G   +   + +++    ++ D   FN ++ +  + G +++  ++F
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVF 347

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            TM  +   PD  ++  M+  Y   G      +L + M+ 
Sbjct: 348 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 387



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ ++  L K  +   A  +F++ ++ GL P+  VY+ L+  Y   G +++A    + M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+   Y  L+    K  R D    +  EM   GI+ S + YN IIDG  +A + 
Sbjct: 562 S-AGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRT 620

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    +  T + ++     +   ++    + E   M VK DI TLN 
Sbjct: 621 VPAKVKFHEMTESG-IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 679

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P VVTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +P+S     +V    K   I++  + L +++  +  L+
Sbjct: 740 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 778


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 190/420 (45%), Gaps = 46/420 (10%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLF 137
           P+L+ L      K+   A+ I  +LR+          F+  +++ G C +   ++A  L 
Sbjct: 131 PLLKGL---CADKRTSDAMDI--VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 138 EVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++M  DG    P V  YT +++ + + G LD+A+ T ++M       P+V TYS +I + 
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD-RGILPNVVTYSSIIAAL 244

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    D   ++L  M   G+  +  TYN+I+ GY  + + +E    F   + S G  PD
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE-AIGFLKKMHSDGVEPD 303

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++     +G   +  K ++     G+K +I T   L + Y   G   +M  ++D
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P    ++I+I  + K G +++    F KM+ +G+ P+++TY +++    K+G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 376 LIM-----------------------------------KVDSILRQVENSDVILDTPFFN 400
            +                                    K   ++ ++ +  + LDT FFN
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            II ++ + G V +  +LF  M      PD IT++T+I  Y   G  + A  L   M+++
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 236
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++   ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+    K  + +QA L+F  M   GL P    Y  ++    +SG +++A      M 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                 P    Y+ LI S   F ++D  ++++ EM   GI    + +N+IID + K  + 
Sbjct: 437 D-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E E  F  MV  G   PDI T +++I  Y  +G +++  K       +G+K D  T N 
Sbjct: 496 IESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   Y +    +    +   M+     P ++TYNI+++   +       +E +  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVE 413
            +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  +
Sbjct: 615 TQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 414 KMGELFLTMKERHCVPDNITFATMIQ 439
           +  +LF  +     VPD  T++ M +
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAE 697



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C+T+  ++       QP++A    + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KP++ TY  L++          +  +L  M   GI  +   ++ +I  Y K 
Sbjct: 329 SMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K ++    FS M +  G +PD  T  ++I     SG +E   +++ +     +      
Sbjct: 388 GKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  S      +DK + ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A   FE M+ + L P  
Sbjct: 386 KQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+ +       D+A   I +M     C                            
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDL 504

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TYS LI       + D   K+LA M  +G++   VTYNT+I+GY K  +
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 565 MEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F  +  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + GL+ ++D +   +E +    ++   N I+    Q GD+ +
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 743 AGTYLFMIDEKH 754


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            YT ++S  G    L  A   + +M+S   DC  +V+TYS L+  C K +  DL + +  
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDC--NVHTYSALMNVCIKANELDLAQDVYK 59

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M   G   + VTYN +ID     +K  E      A+V SG    ++ T N++ISA   S
Sbjct: 60  QMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSG-IQAEVRTYNTVISACNKS 118

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G  E+  K Y +    GVK    T   L  +YG+ G  +K   +   M +R     V+TY
Sbjct: 119 GQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITY 178

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           + +I    KAG  E   E F KM     KPN +TY SL++A S  G   K   +  Q++ 
Sbjct: 179 SSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQT 238

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
                D+  +  +I+AY + G   +  + F  M+ + C PD   F +++
Sbjct: 239 QGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 2/288 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   G  +Q  +A  L   M S G+  +V  Y+AL++   ++  LD A      M
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P++ TY+ILI       +     ++   +   GI+    TYNT+I    K+ +
Sbjct: 62  LE-EGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQ 120

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    +  M+ + G  P   T  ++ISAYG  G +EK    + +    G + ++ T +
Sbjct: 121 PEQALKVYEKML-AAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYS 179

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  +AG ++    +   M K    P VVTYN +I      GH EK  E F++M+ +
Sbjct: 180 SLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQ 239

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           G KP+SITYC L++AY + G   +      Q+++     D   FN ++
Sbjct: 240 GCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 1/260 (0%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY+ +I  C    +     +++AEM   GI+C+  TY+ +++   KA + +  +  +  
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 60

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M+E G C P++ T N +I    +     +  +        G++A+++T N +  +  ++G
Sbjct: 61  MLEEG-CSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSG 119

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             ++   V + M      P+  TY  +I  +GK G +EK  + F+ M  RG + N ITY 
Sbjct: 120 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYS 179

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           SL+SA  KAG       +  ++   +   +   +N +I+A    G  EK  ELF  M+ +
Sbjct: 180 SLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQ 239

Query: 426 HCVPDNITFATMIQAYNALG 445
            C PD+IT+  +I AY   G
Sbjct: 240 GCKPDSITYCGLITAYERGG 259



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 4/211 (1%)

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           EA K+K  +       L+R     QA  +T+  ++    K  QPEQA  ++E ML+ G+K
Sbjct: 80  EASKRKTTERRRLAVALVRSG--IQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVK 137

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PS   YTAL+SAYG+ G +++A     DM     C+ +V TYS LI +C K  R+++  +
Sbjct: 138 PSATTYTALISAYGKKGQVEKALDIFRDMIR-RGCERNVITYSSLISACEKAGRWEMALE 196

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           + ++M     + + VTYN++I        +E+    F  M ++ GC PD  T   +I+AY
Sbjct: 197 LFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQM-QTQGCKPDSITYCGLITAY 255

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
              G   +  K + +    G   D    N L
Sbjct: 256 ERGGQWRRALKAFEQMQSQGCHPDAAVFNSL 286



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 303 RAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           + G + ++R  ++    M+ R     V TY+ ++    KA  ++  ++ +K+M   G  P
Sbjct: 9   QCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSP 68

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N +TY  L+   +      +   +   +  S +  +   +N +ISA  ++G  E+  +++
Sbjct: 69  NLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVY 128

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M      P   T+  +I AY   G  E A ++   MI
Sbjct: 129 EKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMI 167


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 165/353 (46%), Gaps = 2/353 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q  Y     ++  L+ +L K  + +     +  ML+ G  P+   Y  L+ +  Q+   +
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFE 69

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA S    M +   C P+V++YSILI    +  + D   ++L EM   G + + VTY ++
Sbjct: 70  EARSVFRGM-AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSL 128

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + G  K  K +E    FS MV  G C PD    N +I  +   G++ +  + + E    G
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRG-CPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
               + T N L   + R G + +++S+   M ++   P + T+N +++ F K G + +  
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F +M+  G  P+ ++Y +L+      G   +   +LR++  S V  D   +N +I  Y
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY 307

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            ++G ++   +LF  + +    PD  +++T+I      G   AA  +   MIA
Sbjct: 308 SKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIA 360



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 140/321 (43%), Gaps = 2/321 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           +Q    T+  L+  L K  + ++A  LF  M+  G  P   VY  L+  + + G + EA+
Sbjct: 118 HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAY 177

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
               +M     C P V+TY+ L+   ++   F  ++ +  +M   G   +  T+N ++DG
Sbjct: 178 RLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K     E    F  M  S GC PD+ + N++I    + G   + ++   E    GV  
Sbjct: 237 FCKMGDMVEAHRLFLEM-RSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGP 295

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           DI + NIL   Y ++G  D    +   + K    P   +Y+ +I+   +AG +      F
Sbjct: 296 DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVF 355

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M   G  P++     LV    +   + +   + + +   + +   P +N ++    +A
Sbjct: 356 KDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA 415

Query: 410 GDVEKMGELFLTMKERHCVPD 430
              + + E+F  + ER   PD
Sbjct: 416 KRSDDVCEIFHELTERGFSPD 436



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 39/260 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +  +  +   LF+ ML  G  P++  +  L+  + + G + EA     +M
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S+  C PDV +Y+ LI+      +    +++L EM   G+    V+YN +IDGY K+  
Sbjct: 254 RSLG-CPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI----------------------- 272
            +     F  + +SG   PD F+ +++I     +G +                       
Sbjct: 313 LDHAIKLFYEIPKSG-LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVI 371

Query: 273 ---------EKMEKWYNEFNLMGVKAD----IQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
                    E++ +    F  M VK +    I   N+L     +A   D +  +   + +
Sbjct: 372 PLVIGLCRGERLTESCELFQAM-VKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTE 430

Query: 320 RFFFPTVVTYNIVIETFGKA 339
           R F P V    +++ET  ++
Sbjct: 431 RGFSPDVEISKVILETLRRS 450


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 178/365 (48%), Gaps = 44/365 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           A+++F  +R+++    +C     T+T +M       Q E    +F++M+++G+KP++  Y
Sbjct: 170 AIELFNSMRERR---TKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAY 226

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L+ AY   G+  EA +  N +K  +  +PD+                           
Sbjct: 227 NSLLGAYASRGMHREALAIFNLIKK-NGLRPDI--------------------------- 258

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                   V+Y ++++ YG++ + E+    F+ M +   C P+  + N++I AYG++G +
Sbjct: 259 --------VSYTSLLNAYGRSAQPEKAREVFNKM-KKNSCKPNKVSYNALIDAYGSAGML 309

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           ++     +E    G++ D+ +++ L  + GR     ++ ++++  + R      V YN  
Sbjct: 310 KEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I+++   G  EK  E +  M+   +KP+++TY  L+S  SK G   +       + +S V
Sbjct: 370 IKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKV 429

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
                 ++ +I +Y + G + +    F +MK+  C PD +T+ T+IQAYNA G  + A +
Sbjct: 430 SSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWD 489

Query: 453 LENKM 457
           L  +M
Sbjct: 490 LFKEM 494



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 192/437 (43%), Gaps = 74/437 (16%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           ++ Q  Y AR   +  ++ +  +  Q +QA  LF  M     KP  D+Y +L+ A+ ++G
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG 60

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
               A + + DM   +   P   TY+ +I +C     +    ++  +M+  G+    VT+
Sbjct: 61  QWRWAINIMEDMLRAA-IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTH 119

Query: 224 NTIIDG------YGKA-KKFEEMESS----------------------------FSAMVE 248
           N ++        Y KA   FE M+ +                            F++M E
Sbjct: 120 NIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE 179

Query: 249 -SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
               C PD+ T  S++ +Y   G +E  +  ++     GVK +I   N L  +Y   GM+
Sbjct: 180 RRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMH 239

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +  ++ + ++K    P +V+Y  ++  +G++   EK  E F KMK    KPN ++Y +L
Sbjct: 240 REALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNAL 299

Query: 368 VSAYSKAGL-----------------------------------IMKVDSILRQVENSDV 392
           + AY  AG+                                   I ++++IL    +  +
Sbjct: 300 IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
            L+T  +N  I +Y   GD EK  EL+ +M+E +  PD +T+  +I   + LG  TE+ +
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLR 419

Query: 452 NLENKMIAMKENSGKKL 468
             E+ M+  K +S K++
Sbjct: 420 FFED-MVDSKVSSTKEV 435



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 171/357 (47%), Gaps = 6/357 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL IF L+++    +    ++T L+   G+  QPE+A  +F  M  +  KP+   Y AL+
Sbjct: 242 ALAIFNLIKKNG-LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +G+L EA   +++M+     +PDV + S L+ +C +  +   IE IL      GI
Sbjct: 301 DAYGSAGMLKEAVGLLHEMEK-DGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V YN+ I  Y     +E+    +++M ES    PD  T N +IS     G   +  
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESN-VKPDAVTYNILISGSSKLGKYTESL 418

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +++ +     V +  +  + L  SY + G   +  S    M+K   FP V+TY  +I+ +
Sbjct: 419 RFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAY 478

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G  ++  + FK+M+  G+ P++I   SL+ A++K G   +V  ++  ++   + L+ 
Sbjct: 479 NAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQ 538

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +  II++     D +   E+   +        +I+  T+    N LG     +N+
Sbjct: 539 KSYFEIIASCTMIRDWKTASEMIEYLDSS---LSSISVGTLNHVLNFLGKCGKTENM 592


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 3/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM    +  +PE A   F  +L  GL+    + + L+  + ++   DEA   +   
Sbjct: 115 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHR 174

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKA 233
                C PDV++Y+IL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K 
Sbjct: 175 TPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKE 234

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               +    F  MV+ G   PD+ T +S++ A   +  ++K E +  +    GV  D  T
Sbjct: 235 GDVNKACDLFKEMVQRG-IPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWT 293

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L   Y   G + +   V   M+++   P VV  N ++ +  K G I++  + F  M 
Sbjct: 294 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMA 353

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G  P+  +Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G ++
Sbjct: 354 MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLD 413

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           K   +F  M++    P  +T+ T+I A   +G  + A    N+MI
Sbjct: 414 KAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P +  Y+++V A  ++  +D+A + +  M +     PD +TY+ L
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNL 297

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    V  NT++    K  K +E    F  M   G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +PD+F+   M++ Y   G +  M   ++     G+  DI T N+L K+Y   GM DK  
Sbjct: 358 -NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 416

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD  FF  II+   + G V     +F         PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + +  ++  Y  +G  E A  + + M++
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVS 564



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 149/343 (43%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K +  ++A      M++ G+ P    Y  L+  Y  +G   EA     +M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV   + L+ S  K+ +      +   M+  G      +Y  +++GY     
Sbjct: 318 RRQS-ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  PDI+T N +I AY N G ++K    +NE    GVK  + T  
Sbjct: 377 LVDMTDLFDLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYM 435

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + 
Sbjct: 436 TVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 495

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM+ + + + S+++   K G +M   +I     N  +  D   +N ++  Y   G +EK 
Sbjct: 496 GMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA 555

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 556 LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 157/350 (44%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQM 457

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y  LI+           +++++E+   G+    V + +II+   K  +
Sbjct: 458 ID-QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGR 516

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HPD    N ++  Y   G +EK  + ++     G++ ++    
Sbjct: 517 VMDAQNIFDLTVNVG-LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYG 575

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M ++   P+ + YNI+I+   +AG     +  F +M   
Sbjct: 576 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 635

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  TY  ++    K     +   + +++   +V +D    N +I+   Q   VE+ 
Sbjct: 636 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 695

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 696 KDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSM----QNAG 741



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTY+IL+  CT+ HR +L      ++   G+   A+  + ++ G+ +AK+ +E    
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ N ++ +  N                                 G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQ--------------------------------G 198

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 199 KSGQADDLLRMMA-EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 257

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ D   +N +I  Y   G  ++   +F  M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           + +  +PD +   T++ +    G  + A+++ + M AMK
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM-AMK 355



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++  L K  +   A  +F++ ++ GL P   VY  L+  Y   G +++A    + M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+V  Y  L+    K  R D    +  EM   GI+ S + YN IIDG  +A + 
Sbjct: 564 S-AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRT 622

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    +  T + ++     +   ++    + E   M VK DI TLN 
Sbjct: 623 VPAKVKFHEMTESG-IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P  VTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAG 741

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +P+S     +V    K   I++  + L +++  +  L+
Sbjct: 742 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 780


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 187/394 (47%), Gaps = 21/394 (5%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQ 108
           L K+ R + A + I++   ++K  ++ P  +     LD   KQ     A ++   LR   
Sbjct: 161 LCKVGRIDEARELIQEM--TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 218

Query: 109 W-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
                   TF+ L+  L KC Q ++A    + M++ G  P+V  Y ALV+   ++  ++ 
Sbjct: 219 LRVSPDTVTFSTLIDGLCKCGQTDEAC--NDDMIAGGYVPNVVTYNALVNGLCKADKMER 276

Query: 168 AFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           A + I  M  K V+   PDV TYS+L+ +  K  R D   ++L  M+  G   + VT+N+
Sbjct: 277 AHAMIESMVDKGVT---PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNS 333

Query: 226 IIDGYGKAKK----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           IIDG  K+ +    F+     ++ M+      PD  T N +I+    +GN E+    + E
Sbjct: 334 IIDGLCKSDRSGEAFQIALQVYNRMLV-----PDKVTFNILIAGACKAGNFEQASALFEE 388

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
                ++ D+ T   L     +AG  +  R ++D M      P VVTYN+++    K+G 
Sbjct: 389 MVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGR 448

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           IE+  E+ ++M   G  P S+TY SLV A  +A        ++ ++++     DT  +N 
Sbjct: 449 IEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNI 508

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++    ++G  E+   +   M  +   PD+ TFA
Sbjct: 509 LVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFA 542



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 14/341 (4%)

Query: 125 GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  E  +   LFE ++  G  P V  Y  L+ +  ++G L+EA      M S   C 
Sbjct: 90  GLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSS-RGCV 148

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGK----AKKF 236
           P+V TYS+LI    K  R D   +++ EM+    +   + +TYN+ +DG  K    A+  
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E M S     +      PD  T +++I      G  +  E   ++    G   ++ T N 
Sbjct: 209 ELMRSLRDGSLRV---SPDTVTFSTLIDGLCKCGQTD--EACNDDMIAGGYVPNVVTYNA 263

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L     +A   ++  ++++ M  +   P V+TY+++++ F KA  +++  E    M  RG
Sbjct: 264 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 323

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             PN +T+ S++    K+    +   I  QV N  ++ D   FN +I+   +AG+ E+  
Sbjct: 324 CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQAS 383

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            LF  M  ++  PD +TF  +I      G  EAA+++ + M
Sbjct: 384 ALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 164/380 (43%), Gaps = 41/380 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND- 174
           T+  L+  L K    E+A  L   M S G  P+V  Y+ L++   + G +DEA   I + 
Sbjct: 118 TYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 177

Query: 175 ---------------------------------MKSVSD----CKPDVYTYSILIKSCTK 197
                                            M+S+ D      PD  T+S LI    K
Sbjct: 178 TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCK 237

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             + D  E    +M   G   + VTYN +++G  KA K E   +   +MV+  G  PD+ 
Sbjct: 238 CGQTD--EACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDK-GVTPDVI 294

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T + ++ A+  +  +++  +  +     G   ++ T N +     ++    +   +   +
Sbjct: 295 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQV 354

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
             R   P  VT+NI+I    KAG+ E+    F++M  + M+P+ +T+ +L+    KAG +
Sbjct: 355 YNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQV 414

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                IL  + N  V  +   +N ++    ++G +E+  E    M    CVP+++T+ ++
Sbjct: 415 EAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSL 474

Query: 438 IQAYNALGMTEAAQNLENKM 457
           + A      T+ A  L +K+
Sbjct: 475 VYALCRASRTDDALQLVSKL 494



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 147/324 (45%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M
Sbjct: 260 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 319

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C P+V T++ +I    K  R     +I  ++    +    VT+N +I G  KA  
Sbjct: 320 AS-RGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGN 378

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FE+  + F  MV +    PD+ T  ++I     +G +E      +    +GV  ++ T N
Sbjct: 379 FEQASALFEEMV-AKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYN 437

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L     ++G  ++    ++ M      P  +TY  ++    +A   +   +   K+K  
Sbjct: 438 VLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSF 497

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+++TY  LV    K+G   +  ++L ++       D+  F        ++G++   
Sbjct: 498 GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGT 557

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
            EL   +  +  +PD  T ++++ 
Sbjct: 558 MELLRVVLAKGMLPDATTCSSILD 581



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 137/354 (38%), Gaps = 48/354 (13%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           SV  Y  ++ +  ++G    A        +     P + TY+ +I    K +      ++
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             E+   G     VTYNT+ID   KA   EE       M  S GC P++ T + +I+   
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGM-SSRGCVPNVVTYSVLINGLC 162

Query: 268 NSGNIEKMEKW-----------------YNEF----------------------NLMGVK 288
             G I++  +                  YN F                        + V 
Sbjct: 163 KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVS 222

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T + L     + G  D+  +  D M    + P VVTYN ++    KA  +E+    
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDE--ACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + M  +G+ P+ ITY  LV A+ KA  + +   +L  + +     +   FN II    +
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 340

Query: 409 AGDVEKMGELF---LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +   ++ GE F   L +  R  VPD +TF  +I      G  E A  L  +M+A
Sbjct: 341 S---DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVA 391


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN++I+ +GKAK F E  S  + M  +G            
Sbjct: 62  KAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     +G++
Sbjct: 122 TMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ NS V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I    A G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAAAGRJEEA 339



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 179/377 (47%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y ++++ +G++ L  EA S IN+M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   PD  +Y+ L+    +  RF     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKIGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
           + G++ + + Y +++ AY +AGL+     +L +++  D I  DT     I++A G+    
Sbjct: 282 NSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAAAGRJEEA 339

Query: 409 ---------AGDVEKMG-------------------ELFLTMKERHCVPDNITFATMIQA 440
                    AG+V+ +                    E+F  M+ER   PD+   A ++ A
Sbjct: 340 TWVFRQAIDAGEVKDITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNA 399

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   E A ++  +M
Sbjct: 400 YGKLHEFEKANSVYMEM 416



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +    +     NE    GV  D  +   L   + 
Sbjct: 67  FSRLKRSGFA-PDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           + R   P++IT++T+I  +  +G  + A  L  K+     NSG ++ Q 
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL----RNSGVEIDQV 290



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 42/303 (13%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ K++  AL +F  +R+      +C     T   ++ + G+    ++A  LF  M   G
Sbjct: 125 VENKRFLEALSVFAEMRE-----IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIG 179

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             ++ EM   GIE +++TY+TII  +GK  K +     F  +  SG    D     +MI 
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSG-VEIDQVLYQTMIV 297

Query: 265 AYGNSGNIEKMEKWYNEFNL-------------------------------MGVKADIQT 293
           AY  +G +   ++  +E                                   G   DI  
Sbjct: 298 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAAGRJEEATWVFRQAIDAGEVKDITV 357

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L   + +   Y  +  V D M++R +FP      +V+  +GK    EK    + +M+
Sbjct: 358 FERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVYMEMQ 417

Query: 354 HRG 356
             G
Sbjct: 418 DEG 420



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 35/169 (20%)

Query: 320 RFFFPTVVTYNIVIETFGKAG-------HIEKMEE------------------------- 347
           R   P   TY+ +I  FGK G        ++KME+                         
Sbjct: 3   RALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSK 62

Query: 348 ---YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
               F ++K  G  P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  +  +++
Sbjct: 63  AISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            + +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + R + P+  TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RGRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            K   +F  +K     PD + + +MI  +    +   A++L N+M
Sbjct: 61  SKAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEM 105


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 4/372 (1%)

Query: 88  AIKQKKW-QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
            + +  W  LA +I+G +  +   +    T   ++  L K ++ E        M   G+ 
Sbjct: 231 GLVRTGWVDLAWEIYGEV-VRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVF 289

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
             +  Y  L++AY + GL++EAF  +N   S    +P + TY+ ++    K  ++D  + 
Sbjct: 290 ADIVTYNTLINAYCREGLVEEAFQLLNSFSS-RGMEPGLLTYNAILYGLCKIGKYDRAKD 348

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L EM  LG+  +A TYNT++    +     E +  F  M   G   PD+ + +S+I   
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG-VLPDLVSFSSLIGVL 407

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +G++ +    + E    G+  D     IL   + R G       + D M  R  F  V
Sbjct: 408 ARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDV 467

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTYN  +    K       +  F +M  RGM P+  T+ +L+  Y K G + K  ++   
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +  +++  D   +N +I  + +AG++ +  EL+  M  +  +PD+I++ T++  + + G+
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 447 TEAAQNLENKMI 458
              A NL ++M+
Sbjct: 588 LPEALNLCDQML 599



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 167/348 (47%), Gaps = 2/348 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+V + +     +A  +F+ M   G+ P +  +++L+    ++G L +A     +M
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREM 423

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PD   Y+ILI    +        K+  EM   G     VTYNT ++G  K K 
Sbjct: 424 ER-SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F + +  F+ MVE G   PD +T  ++I  Y   GN++K    +       +K D  T N
Sbjct: 483 FADADMLFNEMVERGMV-PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYN 541

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + +AG   + + + D M ++   P  ++Y  V+  F  +G + +      +M  +
Sbjct: 542 TLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK 601

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN +T  +L+  Y ++G + K    L ++ ++ +I D+  +N +I  Y +  ++EK 
Sbjct: 602 GIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA 661

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
             L   M++R    + IT+  ++  + A G  + A+ +  KMI +  N
Sbjct: 662 FILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGIN 709



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 157/326 (48%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +L +     QA + F  M   G+ P   +YT L+  + ++G L +A    ++M
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +   C  DV TY+  +    K   F   + +  EM   G+     T+ T+I GY K   
Sbjct: 459 LA-RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGN 517

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F AMV +    PD  T N++I  +  +G + + ++ +++     +  D  +  
Sbjct: 518 MDKALNLFEAMVRTN-LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYG 576

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   +  +G+  +  ++ D M ++   P +VT N +I+ + ++G + K  EY  KM   
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S +Y +L+  Y K   + K   ++ ++E   +  +   +N I++ +   G +++ 
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            ++   M E    PD  T++++I  +
Sbjct: 697 EQVLRKMIEIGINPDGATYSSLINGH 722



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 149/349 (42%), Gaps = 49/349 (14%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMK------SVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +Y  LV  Y Q+  L E       ++      S++ C         L+    +    DL 
Sbjct: 189 IYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNK-------LLGGLVRTGWVDLA 241

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I  E+   GIE +  T N +++   K +KFE +    S M E  G   DI T N++I+
Sbjct: 242 WEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDM-EGKGVFADIVTYNTLIN 300

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AY   G +E+  +  N F+  G++  + T N +     + G YD+ + V+  M +    P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
              TYN ++    +  +I + +E F +M  RG+ P+ +++ SL+   ++ G + +     
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 385 RQVENSDVILDTPFFNCIISAYGQAG---DVEKMGE------------------------ 417
           R++E S ++ D   +  +I  + + G   D  KM +                        
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480

Query: 418 --------LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                   LF  M ER  VPD  TF T+I+ Y   G  + A NL   M+
Sbjct: 481 KMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMV 529



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 124/294 (42%), Gaps = 36/294 (12%)

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------- 246
           R  ++E +++   Y G     + Y+ ++  Y +AKK  E   +F  +             
Sbjct: 169 RVKVVESLISTCFYFG--SVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACN 226

Query: 247 ---------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
                                V  GG   +++TLN M++A       E +  + ++    
Sbjct: 227 KLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK 286

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GV ADI T N L  +Y R G+ ++   +++    R   P ++TYN ++    K G  ++ 
Sbjct: 287 GVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           ++   +M   G+ PN+ TY +L+    +   I++   I  ++    V+ D   F+ +I  
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGV 406

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             + G + +    F  M+    VPDN+ +  +I  +   G    A  + ++M+A
Sbjct: 407 LARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 114 CQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           C T  K     G C+  +  +A      M+S+G+ P    Y  L+  Y +   L++AF  
Sbjct: 610 CNTLIK-----GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFIL 664

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           IN+M+     + ++ TY++++       +    E++L +M  +GI     TY+++I+G+ 
Sbjct: 665 INEMEK-RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHV 723

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIF 257
                +E       M++ G    D F
Sbjct: 724 SQDNMKEAFRFHDEMLQRGLVPDDRF 749


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 3/342 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ +LGK K   +A  +F  + S   KP+   Y +++    Q G  ++     ++M 
Sbjct: 134 LSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMC 193

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +  DC PD  TYS+L+ +  K  R D   ++  EM   G+  +A  Y T++  Y K+   
Sbjct: 194 NEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSG-- 251

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +E        ++  GC P +FT   +I   G SG +E     +      G K D+  +N 
Sbjct: 252 DEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINN 311

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHR 355
           L   +G+AG  +    + D M+     P VVTYN VI+  F       +   +F+KMK  
Sbjct: 312 LINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN 371

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S TY  L+  + K   + K   +L +++          +  +I+A G+A   E  
Sbjct: 372 GVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 431

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ELFL +KE         +A MI+     G    A +L N+M
Sbjct: 432 NELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEM 473



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 170/379 (44%), Gaps = 41/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE-AFSTIND 174
           T++ L+    K  + + A  LF+ M ++GL P+  +YT L++ Y +SG  DE A   + +
Sbjct: 204 TYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSG--DEKALGLVQE 261

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK    C P V+TY+ LIK   K  R +    +   M   G +   V  N +I+ +GKA 
Sbjct: 262 MKD-KGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAG 320

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           + E+    F  M  S  C P++ T N++I A + +     +   W+ +    GV     T
Sbjct: 321 RLEDALKLFDQM-RSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFT 379

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFP----------------------------- 324
            +IL   + +    +K   +++ M ++ F P                             
Sbjct: 380 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELK 439

Query: 325 ------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                 +   Y ++I+  GK G   +  + F +MK  G  P+   Y +L+S   +AG+I 
Sbjct: 440 ENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIE 499

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +  S LR +E +    D    N I++   + G  E+  E+F+ MK+    PD +++ T++
Sbjct: 500 EAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTIL 559

Query: 439 QAYNALGMTEAAQNLENKM 457
            + +  GM E A  L  +M
Sbjct: 560 GSLSRSGMFEEAAKLMREM 578



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 40/333 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  LGK  + E A  +F  ML DG KP V +   L++ +G++G L++A    + M
Sbjct: 273 TYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQM 332

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
           +S+  C P+V                                    +TYSILI    K +
Sbjct: 333 RSLK-CAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTN 391

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFT 258
           R +    +L EM   G       Y ++I+  GKAK++E     F  + E+ G     I+ 
Sbjct: 392 RVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYA 451

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           +  MI   G  G   +    +NE   +G   D+   N L     RAGM ++  S +  M+
Sbjct: 452 V--MIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTME 509

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P + ++NI++    + G  E+  E F KMK   +KP++++Y +++ + S++G+  
Sbjct: 510 ENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFE 569

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           +   ++R++ +     D   ++ I+ A G+  +
Sbjct: 570 EAAKLMREMGSRGFEYDHITYSSILEAVGKVDE 602



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 39/280 (13%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMES 241
           D+ TY  LI+       F  + K++ EM      C       + ++   GKAK   +  S
Sbjct: 94  DLTTYMPLIRCLDDCGLFGEMWKMIQEM-VRSPTCVIGPADLSEVVKILGKAKMVNKALS 152

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F   ++S  C P   T NSMI      G+ EK+ + Y+E   M  + D           
Sbjct: 153 VFY-QIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHE---MCNEGDC---------- 198

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                                FP  +TY++++  F K G  +     F +MK  G+ P +
Sbjct: 199 ---------------------FPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTA 237

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L++ Y K+G   K   +++++++         +  +I   G++G VE    +FL 
Sbjct: 238 KIYTTLLAIYFKSG-DEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLN 296

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           M +  C PD +    +I  +   G  E A  L ++M ++K
Sbjct: 297 MLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLK 336



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 37/184 (20%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K+++ A ++F L  ++   ++  + +  ++  LGKC +P +A  LF  M   G  P V
Sbjct: 424 KAKRYEAANELF-LELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDV 482

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
             Y AL+S   ++G+++EAFS +  M+  + C                            
Sbjct: 483 YAYNALMSGLVRAGMIEEAFSALRTMEE-NGCTPDLNSHNIILNGLARTGRPEQATEMFM 541

Query: 182 -------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                  KPD  +Y+ ++ S ++   F+   K++ EM   G E   +TY++I++  GK  
Sbjct: 542 KMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVD 601

Query: 235 KFEE 238
           + +E
Sbjct: 602 EDDE 605


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 190/420 (45%), Gaps = 46/420 (10%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLF 137
           P+L+ L      K+   A+ I  +LR+          F+  +++ G C +   ++A  L 
Sbjct: 131 PLLKGL---CADKRTSDAMDI--VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 138 EVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++M  DG    P V  YT +++ + + G LD+A+ T ++M       P+V TYS +I + 
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD-RGILPNVVTYSSIIAAL 244

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    D   ++L  M   G+  +  TYN+I+ GY  + + +E    F   + S G  PD
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE-AIGFLKKMHSDGVEPD 303

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++     +G   +  K ++     G+K +I T   L + Y   G   +M  ++D
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P    ++I+I  + K G +++    F KM+ +G+ P+++TY +++    K+G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 376 LIM-----------------------------------KVDSILRQVENSDVILDTPFFN 400
            +                                    K   ++ ++ +  + LDT FFN
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            II ++ + G V +  +LF  M      PD IT++T+I  Y   G  + A  L   M+++
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 236
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++   ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+    K  + +QA L+F  M   GL P    Y  ++    +SG +++A      M 
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                 P    Y+ LI S   F ++D  ++++ EM   GI    + +N+IID + K  + 
Sbjct: 437 D-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E E  F  MV  G   PDI T +++I  Y  +G +++  K       +G+K D  T N 
Sbjct: 496 IESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   Y +    +    +   M+     P ++TYNI+++   +       +E +  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVE 413
            +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  +
Sbjct: 615 TQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 414 KMGELFLTMKERHCVPDNITFATMIQ 439
           +  +LF  +     VPD  T++ M +
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAE 697



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C+T+  ++       QP++A    + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KP++ TY  L++          +  +L  M   GI  +   ++ +I  Y K 
Sbjct: 329 SMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K ++    FS M +  G +PD  T  ++I     SG +E   +++ +     +      
Sbjct: 388 GKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  S      +DK + ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A   FE M+ + L P  
Sbjct: 386 KQGKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+ +       D+A   I +M     C                            
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDL 504

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TYS LI       + D   K+LA M  +G++   VTYNT+I+GY K  +
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 565 MEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F  +  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + GL+ ++D +   +E +    ++   N I+    Q GD+ +
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 743 AGTYLFMIDEKH 754


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 6/294 (2%)

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKP-----DVYTYSILIKSCTKFHRFDLIEKIL 208
           AL+    + GL + A    + ++S+ D        DVYTY+ +I  C    +     +++
Sbjct: 37  ALLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELV 96

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AEM   G+ C+  TY+ +++   KA + E     +  ++  G C P++ T N +I  +G 
Sbjct: 97  AEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREG-CTPNLVTYNILIDIHGK 155

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            GN ++  +  +     G K +++T N +  +  R+G  +    V + M      PT  T
Sbjct: 156 MGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATT 215

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I  +GK G IE+    F+ M  RG + N ITY SL+SA  KAG       +L ++ 
Sbjct: 216 YTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMH 275

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             +   +T  FN ++SA  Q G  +   ++F  M    C PD +++A +I A++
Sbjct: 276 RDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFD 329



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 3/217 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K   WQ A+++   L + Q  +   +T+  ++    +  QPE A  ++E ML+DG +P+ 
Sbjct: 155 KMGNWQEAVQVLDAL-EDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTA 213

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YTAL+SAYG++G ++EA     DM     C+ +V TYS LI +C K  R+ L  ++L 
Sbjct: 214 TTYTALISAYGKTGKIEEALRIFQDMVR-RGCERNVITYSSLISACEKAGRWQLALELLD 272

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM     + + VT+N ++    +  +++  +  F  M  S GC PD  +   +ISA+   
Sbjct: 273 EMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQM-PSCGCKPDAVSYAILISAFDRG 331

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
               +  +  +E    G + D+   N++ ++  R+G+
Sbjct: 332 NQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGV 368



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 138/295 (46%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   G  +Q  +A  L   M   G+  +V  Y+AL++   ++  L+ A      +
Sbjct: 75  TYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQL 134

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P++ TY+ILI    K   +    ++L  +   G +    TYNTI+    ++ +
Sbjct: 135 LR-EGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQ 193

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E     +  M+  G   P   T  ++ISAYG +G IE+  + + +    G + ++ T +
Sbjct: 194 PEHALRVYERMLADGA-QPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYS 252

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  +AG +     ++D M +    P  VT+N ++    + G  +  ++ F++M   
Sbjct: 253 SLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSC 312

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G KP++++Y  L+SA+ +     +    L +++      D   +N +I A  ++G
Sbjct: 313 GCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSG 367



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ LM +  K  + E A  ++  +L +G  P++  Y  L+  +G+ G   EA   ++ 
Sbjct: 109 HTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDA 168

Query: 175 MKSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           ++     KP+V TY+ ++ +C +     H   + E++LA+    G + +A TY  +I  Y
Sbjct: 169 LED-QGTKPEVRTYNTILSACNRSGQPEHALRVYERMLAD----GAQPTATTYTALISAY 223

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK  K EE    F  MV  G C  ++ T +S+ISA   +G  +   +  +E +    K +
Sbjct: 224 GKTGKIEEALRIFQDMVRRG-CERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPN 282

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T N L  +  + G +   + V + M      P  V+Y I+I  F +     +  +   
Sbjct: 283 TVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALD 342

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +M+ +G +P+   Y  ++ A +++G++
Sbjct: 343 EMQGQGHRPDVGVYNVVIEALTRSGVL 369



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 303 RAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           + G + ++R  ++    M+       V TY+ ++    KA  +E   + + ++   G  P
Sbjct: 82  QCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTP 141

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N +TY  L+  + K G   +   +L  +E+     +   +N I+SA  ++G  E    ++
Sbjct: 142 NLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVY 201

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M      P   T+  +I AY   G  E A  +   M+
Sbjct: 202 ERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMV 240


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 176/382 (46%), Gaps = 53/382 (13%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L ++I   LR Q W+      F  L+   GK      A  +  +M  +G  P+V  
Sbjct: 114 KKWNLVVEILEWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVS 173

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE------ 205
            TAL+ AYG+ G  + A +    M+     +P  +TY I++K+  + ++F   E      
Sbjct: 174 QTALMEAYGKGGRYNNAEAIFRRMQKWG-PEPSAFTYQIILKTFVQGNKFREAEELFDNL 232

Query: 206 --------------------------------KILAEMSYLGIECSAVTYNTIIDGYGKA 233
                                           K  A+M+ LGI+ + VTYN+++      
Sbjct: 233 LNDENSPLKPDQKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSF---E 289

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             ++E+ + +  M +     PD+ +   ++SAYG +   E+    + E    G++   + 
Sbjct: 290 TNYKEVSNIYDQM-QRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKA 348

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            NIL  ++  +GM ++ ++V   M++  +FP + +Y  ++  +  A  +E  E++FK++ 
Sbjct: 349 YNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLI 408

Query: 354 HRGMKPNSITYCSLVSAYSKAG---LIMK--VDSILRQVENSDVILDTPFFNCIISAYGQ 408
             G +PN +TY +L+  Y+K     ++MK   + ++R ++ +  IL T     I+ AYG+
Sbjct: 409 QDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTT-----IMDAYGK 463

Query: 409 AGDVEKMGELFLTMKERHCVPD 430
           +GD +     F  M+     PD
Sbjct: 464 SGDFDSAVHWFKEMESNGIPPD 485



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 44/237 (18%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D F L   I+AYG  G+    EK     N  G   ++ +   L ++YG+ G Y+   ++ 
Sbjct: 138 DFFML---ITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIF 194

Query: 315 DFMQKRFFFPTVVTYNIVIETF-------------------------------------- 336
             MQK    P+  TY I+++TF                                      
Sbjct: 195 RRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMH 254

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            KAG  EK  + F +M   G++  ++TY SL+S  +      +V +I  Q++ +D+  D 
Sbjct: 255 KKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETN---YKEVSNIYDQMQRADLRPDV 311

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +  ++SAYG+A   E+   +F  M +    P    +  ++ A++  GM E AQ +
Sbjct: 312 VSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTV 368


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 198/433 (45%), Gaps = 55/433 (12%)

Query: 50  DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIF-GLLRQQQ 108
           D  ++L T  A + I+  V S  Y  L     LE L    K ++W  A ++   ++ +  
Sbjct: 28  DCERLLET-MAARGIQPNVVS--YNGL-----LEGL---CKLERWHEAEELVRDMISRGG 76

Query: 109 WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
                  T++ L+    K  + E++  L + ++S GL+P   +YT ++++  +S  L EA
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEA 136

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              + +M   + C P + T++ LI  C +    ++ + +L  M+  G++   VTYNT++D
Sbjct: 137 LELLEEMIR-AGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMD 195

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEKWYNE 281
           G  KA + +E E     M ++ GC PD+   +S +     SG +       E+M    ++
Sbjct: 196 GLCKAGRLQEAEQLLERM-KASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHD 254

Query: 282 FNLM-----------------------------GVKADIQTLNILTKSYGRAGMYDKMRS 312
            N++                             G   ++   + +     + G   + RS
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           VM+ M +    P VVTY+ ++    KAG IE+  E  ++M   G KPN++TYCSLV    
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 373 KAGLIMKVDSILRQVENSDVILD-----TPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
             G + + + ++ ++ +     D        +N +I    +AG ++   + F  M+ + C
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGC 434

Query: 428 VPDNITFATMIQA 440
            PD ++++T+++ 
Sbjct: 435 DPDGVSYSTIVEG 447



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 148/337 (43%), Gaps = 3/337 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    K  +P     L E M + G++P+V  Y  L+    +     EA   + DM
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 176 KSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            S      PD+ TYS L+    K  + +   ++L E+   G+   A+ Y  ++    K+ 
Sbjct: 72  ISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSA 131

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E       M+ +G C P + T N++IS      N+E  +         GVKAD+ T 
Sbjct: 132 RLGEALELLEEMIRAG-CCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTY 190

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +AG   +   +++ M+     P VV Y+  +    K+G +    +  ++M+ 
Sbjct: 191 NTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRD 250

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVE 413
               PN +TY +++    K+G I     ++ Q+ +SD   L+   ++ ++    + G  +
Sbjct: 251 SDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQ 310

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +   +   M    C PD +T+++++      G  E A
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 142/316 (44%), Gaps = 37/316 (11%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           + C P+  T++ L+   +K  R    E++L  M+  GI+ + V+YN +++G  K +++ E
Sbjct: 4   TGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHE 63

Query: 239 MESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
            E     M+  GG   PD+ T ++++S Y  +G +E+  +   E    G++ D      +
Sbjct: 64  AEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKV 123

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI------------------------ 333
             S  ++    +   +++ M +    PT++T+N +I                        
Sbjct: 124 MASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGV 183

Query: 334 -----------ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                      +   KAG +++ E+  ++MK  G  P+ + Y S V    K+G ++    
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQ 243

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMIQAY 441
           +L Q+ +SD   +   +N I+    ++G ++   E+   M     C  + + ++T++   
Sbjct: 244 VLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGL 303

Query: 442 NALGMTEAAQNLENKM 457
             LG T+ A+++   M
Sbjct: 304 CKLGRTQEARSVMEAM 319



 Score = 38.9 bits (89), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G  PNS+T+ +LV+ +SK G     + +L  +    +  +   +N ++    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 412 VEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             +  EL   M  R     PD +T++T++  Y   G  E ++ L  ++I+
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVIS 110


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 177/381 (46%), Gaps = 13/381 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q  W+ AL+IF  L+++  Y+     +  ++ +LGK ++      L++ M+S G+ P  
Sbjct: 172 EQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVN 231

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI-- 207
             Y  L+  Y + GL +EA   ++ M      +PD  T  +++++  K   F   E+   
Sbjct: 232 STYGTLIDVYSKGGLTEEALHWLDRMNK-QGMEPDEVTMGVVVQTYKKAGEFKKAEQFFK 290

Query: 208 ---LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
              L   S   +  S+ TYNT+ID YGKA +  E   +F+ M+   G  P+  T N+MI 
Sbjct: 291 NWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLRE-GIIPNTVTFNTMIH 349

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
             GN G +E+      +   +    D +T NIL   + +    D+  S    M++    P
Sbjct: 350 ICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEP 409

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +V+Y  ++  F     + + E    +M  RG++ +  T  +L   Y +AG++ K     
Sbjct: 410 DLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWF 469

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           R+  + +  + +  ++  I AYG+ G + +  + FL  KE   +   + F  MI+AY   
Sbjct: 470 RRF-HLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKL-SVLEFNVMIKAYGIS 527

Query: 445 GMTEAAQNLENKMIAMKENSG 465
              E A  L + M    EN G
Sbjct: 528 NRYEKACQLIDSM----ENHG 544



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 156/372 (41%), Gaps = 37/372 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++ + G   Q E+A+ L + M      P    Y  L+S + +   +D A S    M
Sbjct: 343 TFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKM 402

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-----SAVT-------- 222
           K  +  +PD+ +Y  L+ + +  H     E +++EM   G+E      SA+T        
Sbjct: 403 KE-ARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGM 461

Query: 223 ---------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                                Y+  ID YG+     E E +F    ES      +   N 
Sbjct: 462 LKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKL--SVLEFNV 519

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MI AYG S   EK  +  +     GV  D  + N L +    A +  K +  +  MQ+  
Sbjct: 520 MIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQ 579

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
                + Y  VI +F K G +E  E  FK+M    ++P+ + Y  L++A++  G + +  
Sbjct: 580 LVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAV 639

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           + +  + N+ + ++   +N +I  Y + G +E+  E +  ++     PD  +   MI  Y
Sbjct: 640 NYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLY 699

Query: 442 NALGMTEAAQNL 453
           +   M + A+ +
Sbjct: 700 SERSMVKQAEEI 711



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 3/261 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+ +L     P +A      M    L      Y A++S++ + G L+ A     +M
Sbjct: 551 SYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEM 610

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               + +PDV  Y ILI +             +  +   G+  +AV YN++I  Y K   
Sbjct: 611 IGY-NVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGY 669

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE + ++  M+++    PD+++ N MI  Y     +++ E+ +      G  A+  +  
Sbjct: 670 LEEAQEAYK-MLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKG-DANEFSFA 727

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++   Y R G   +   ++  M++      +++YN V+  +   G  +     FK+M   
Sbjct: 728 MMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEA 787

Query: 356 GMKPNSITYCSLVSAYSKAGL 376
            ++P+  T+ SL     K G+
Sbjct: 788 AIQPDDCTFKSLGVVLVKCGI 808


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 12/363 (3%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVMLSDG----LKPSVDVYTALV 156
           LLRQ      R    +   ++ G C  ++ E+A  L  +M+ DG      P V  Y  ++
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMV-DGQDSSCSPDVVSYNIVI 200

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + +   G +D+A+S   +M  VS   PDV TY+ +I    K    D  E +  +M   G+
Sbjct: 201 NGFFNEGQVDKAYSLFLEM-GVS---PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGV 256

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + VTYNTIIDG  KA++ +  E  F  MV+ G   P   T N++I     +  +++ E
Sbjct: 257 KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKG-VKPSNVTYNTIIDGLCKAQAVDRAE 315

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             + +    GVK D  T N +     +A   DK   V   M  +   P  +TY I+I+  
Sbjct: 316 GVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            KA  +++ E  F++M  +G+KPN+ TY  L+  Y   G   +V   ++++   D+  D 
Sbjct: 376 CKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDV 435

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +  ++    + G   +   LF +M  +   P    +  M+  Y   G      +L N 
Sbjct: 436 FTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495

Query: 457 MIA 459
           M+A
Sbjct: 496 MVA 498



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 163/371 (43%), Gaps = 12/371 (3%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC---KQPEQASLLFEVMLSDGLKPSV 149
           + +L    FGL+ +  W   R        ++ G C   +  E   +L   M   G +  V
Sbjct: 99  RLELGFAAFGLILKTGW---RVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGV 155

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKI 207
             Y  L+         +EA   ++ M    D  C PDV +Y+I+I       + D    +
Sbjct: 156 VSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSL 215

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             EM   G+    VTYNTIIDG  KA++ +  E  F  MVE G   P+  T N++I    
Sbjct: 216 FLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKG-VKPNNVTYNTIIDGLC 271

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            +  ++  E  + +    GVK    T N +     +A   D+   V   M  R   P  V
Sbjct: 272 KAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHV 331

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TYN +I+   KA  I+K E  F++M  +G+KP+++TY  ++    KA  + + + + +Q+
Sbjct: 332 TYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQM 391

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            +  V  +   +NC+I  Y   G  E++ +    M      PD  T+  ++      G  
Sbjct: 392 IDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKC 451

Query: 448 EAAQNLENKMI 458
             A++L + MI
Sbjct: 452 NEARSLFDSMI 462



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 6/347 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  +F+ M+  G+KP    Y  ++    ++  +D+A      M
Sbjct: 297 TYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM 356

Query: 176 --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
             K V   KPD  TY+I+I    K    D  E +  +M   G++ +  TYN +I GY   
Sbjct: 357 IDKGV---KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLST 413

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            ++EE+      M  +    PD+FT   ++     +G   +    ++     G+K  +  
Sbjct: 414 GQWEEVVQRIKEM-SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTI 472

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
             I+   YG+ G   +M  +++ M      P    +N VI  + K   I+++   F KMK
Sbjct: 473 YGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMK 532

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G+ PN +TY +L+ A  K G +        Q+ N  V  +   FN ++         E
Sbjct: 533 QQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWE 592

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           K+ ELFL M  +   PD + F T++      G    A+ L + M+ M
Sbjct: 593 KVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCM 639



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 172/378 (45%), Gaps = 12/378 (3%)

Query: 97  ALKIFG-LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASL-LFEVMLSDG---LKPSVDV 151
           ALK+F  LL   +    R       +V   KC    + ++  F  ML D    + P    
Sbjct: 27  ALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCT 86

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ ++  + + G L+  F+    +        D+    +L   C      + +  +L +M
Sbjct: 87  YSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQM 146

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES--GGCHPDIFTLNSMISAYGNS 269
             +G     V+YNT++ G    ++ EE       MV+     C PD+ + N +I+ + N 
Sbjct: 147 PEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNE 206

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G ++K    Y+ F  MGV  D+ T N +     +A   D+   V   M ++   P  VTY
Sbjct: 207 GQVDKA---YSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+   KA  ++  E  F+KM  +G+KP+++TY +++    KA  + + + + +Q+ +
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID 323

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  D   +N II    +A  ++K   +F  M ++   PDN+T+  +I         + 
Sbjct: 324 RGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDR 383

Query: 450 AQNLENKMI--AMKENSG 465
           A+ +  +MI   +K N+G
Sbjct: 384 AEGVFQQMIDKGVKPNNG 401



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 182/410 (44%), Gaps = 24/410 (5%)

Query: 27  RIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALD 86
           + QAI ++ G  Q++ I K  + D    L     I  + K  S  + + ++     + +D
Sbjct: 342 KAQAIDKAEGVFQQM-IDKGVKPD---NLTYTIIIDGLCKAQSVDRAEGVFQ----QMID 393

Query: 87  EAIKQKKWQLALKIFGLLRQQQWYQARCQ--------------TFTKLMVMLGKCKQPEQ 132
           + +K         I G L   QW +   +              T+  L+  L K  +  +
Sbjct: 394 KGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNE 453

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  LF+ M+  G+KPSV +Y  ++  YG+ G L E    +N M + +   P+   ++ +I
Sbjct: 454 ARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVA-NGISPNHRIFNTVI 512

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
            +  K    D +  I  +M   G+  + VTY T+ID   K  + ++    F+ M+  G  
Sbjct: 513 CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEG-V 571

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P+    NS++         EK+E+ + E    G++ DI   N +  +  + G   + R 
Sbjct: 572 TPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARR 631

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++D M      P V++YN +I+    A  +++  +    M   G+KPN ++Y +L+  Y 
Sbjct: 632 LIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYC 691

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           KAG I     + R++    V      +N I++   ++G   +  EL++ M
Sbjct: 692 KAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNM 741



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 156/346 (45%), Gaps = 6/346 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  +F+ M+  G+KP    YT ++    ++  +D A      M
Sbjct: 332 TYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQM 391

Query: 176 --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
             K V   KP+  TY+ LI       +++ + + + EMS   +E    TY  ++D   K 
Sbjct: 392 IDKGV---KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKN 448

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K  E  S F +M+  G   P +     M+  YG  G + +M    N     G+  + + 
Sbjct: 449 GKCNEARSLFDSMIRKG-IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRI 507

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +  +Y +  M D++  +   M+++   P VVTY  +I+   K G ++     F +M 
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMI 567

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           + G+ PN++ + SLV          KV+ +  ++ N  +  D  FFN ++    + G V 
Sbjct: 568 NEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVM 627

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +   L  +M      PD I++ T+I  +      + A  L + M++
Sbjct: 628 EARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVS 673



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 143/316 (45%), Gaps = 3/316 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           KW+   ++F L    Q  +     F  ++  L K  +  +A  L + M+  GLKP V  Y
Sbjct: 590 KWEKVEELF-LEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISY 648

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             L+  +  +  +DEA   ++ M S +  KP++ +Y+ L+    K  R D    +  EM 
Sbjct: 649 NTLIDGHCFASRMDEAVKLLDGMVS-AGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREML 707

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+     TYNTI++G  ++ +F E    +  M++S      I T + ++  +  +   
Sbjct: 708 RKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWS-ICTYSIILDGFCKNNCF 766

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           ++  K +     M ++ DI T NI+     + G  +    +   +      P+VVTY ++
Sbjct: 767 DEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLI 826

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
            E   + G +E+++  F  M+  G  PNS    +L+      G I +  + L +++  + 
Sbjct: 827 AENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNF 886

Query: 393 ILDTPFFNCIISAYGQ 408
            L+    + +IS + +
Sbjct: 887 SLEASTTSMLISLFSR 902



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 154/343 (44%), Gaps = 6/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  L+  L    + E+   LF  ML+ G++P +  +  ++    + G + EA   I+ M
Sbjct: 577 VFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   KPDV +Y+ LI       R D   K+L  M   G++ + V+YNT++ GY KA +
Sbjct: 637 VCMG-LKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQT 293
            +     F  M+  G   P + T N++++    SG   +  + Y   N++  +    I T
Sbjct: 696 IDNAYCLFREMLRKG-VTPGVETYNTILNGLFRSGRFSEARELY--VNMIKSRKLWSICT 752

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +I+   + +   +D+   +   +        ++T+NI+I+   K G  E   + F  + 
Sbjct: 753 YSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIP 812

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+ P+ +TY  +     + G + ++D +   +E S    ++   N +I      G++ 
Sbjct: 813 ANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIP 872

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
           + G     + E++   +  T + +I  ++     + A++L  K
Sbjct: 873 RAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSLPEK 915


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 4/372 (1%)

Query: 88  AIKQKKW-QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
            + +  W  LA +I+G +  +   +    T   ++  L K ++ E        M   G+ 
Sbjct: 231 GLVRTGWVDLAWEIYGEV-VRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVF 289

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
             +  Y  L++AY + GL++EAF  +N   S    +P + TY+ ++    K  ++D  + 
Sbjct: 290 ADIVTYNTLINAYCREGLVEEAFQLLNSFSS-RGMEPGLLTYNAILYGLCKIGKYDRAKD 348

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L EM  LG+  +A TYNT++    +     E +  F  M   G   PD+ + +S+I   
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG-VLPDLVSFSSLIGVL 407

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +G++ +    + E    G+  D     IL   + R G       + D M  R  F  V
Sbjct: 408 ARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDV 467

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTYN  +    K       +  F +M  RGM P+  T+ +L+  Y K G + K  ++   
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +  +++  D   +N +I  + +AG++ +  EL+  M  +  +PD+I++ T++  + + G+
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 447 TEAAQNLENKMI 458
              A NL ++M+
Sbjct: 588 LPEALNLCDQML 599



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 167/348 (47%), Gaps = 2/348 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+V + +     +A  +F+ M   G+ P +  +++L+    ++G L +A     +M
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREM 423

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PD   Y+ILI    +        K+  EM   G     VTYNT ++G  K K 
Sbjct: 424 ER-SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F + +  F+ MVE G   PD +T  ++I  Y   GN++K    +       +K D  T N
Sbjct: 483 FADADMLFNEMVERGMV-PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYN 541

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + +AG   + + + D M ++   P  ++Y  V+  F  +G + +      +M  +
Sbjct: 542 TLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK 601

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN +T  +L+  Y ++G + K    L ++ ++ +I D+  +N +I  Y +  ++EK 
Sbjct: 602 GIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA 661

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
             L   M++R    + IT+  ++  + A G  + A+ +  KMI +  N
Sbjct: 662 FILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGIN 709



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 157/326 (48%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +L +     QA + F  M   G+ P   +YT L+  + ++G L +A    ++M
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +   C  DV TY+  +    K   F   + +  EM   G+     T+ T+I GY K   
Sbjct: 459 LA-RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGN 517

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F AMV +    PD  T N++I  +  +G + + ++ +++     +  D  +  
Sbjct: 518 MDKALNLFEAMVRTN-LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYG 576

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   +  +G+  +  ++ D M ++   P +VT N +I+ + ++G + K  EY  KM   
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S +Y +L+  Y K   + K   ++ ++E   +  +   +N I++ +   G +++ 
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            ++   M E    PD  T++++I  +
Sbjct: 697 EQVLRKMIEIGINPDGATYSSLINGH 722



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 49/349 (14%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMK------SVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +Y  LV  Y Q+  L E       ++      S++ C         L+    +    DL 
Sbjct: 189 IYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNK-------LLGGLVRTGWVDLA 241

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I  E+   GIE +  T N +++   K +KFE +    S M E  G   DI T N++I+
Sbjct: 242 WEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDM-EGKGVFADIVTYNTLIN 300

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AY   G +E+  +  N F+  G++  + T N +     + G YD+ + V+  M +    P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
              TYN ++    +  +I + +E F +M  RG+ P+ +++ SL+   ++ G + +     
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 385 RQVENSDVILDTPFFNCIISAY---GQAGDVEKMGE------------------------ 417
           R++E S ++ D   +  +I  +   G   D  KM +                        
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480

Query: 418 --------LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                   LF  M ER  VPD  TF T+I+ Y   G  + A NL   M+
Sbjct: 481 KMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMV 529



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 124/294 (42%), Gaps = 36/294 (12%)

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------- 246
           R  ++E +++   Y G     + Y+ ++  Y +AKK  E   +F  +             
Sbjct: 169 RVKVVESLISTCFYFG--SVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACN 226

Query: 247 ---------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
                                V  GG   +++TLN M++A       E +  + ++    
Sbjct: 227 KLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK 286

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GV ADI T N L  +Y R G+ ++   +++    R   P ++TYN ++    K G  ++ 
Sbjct: 287 GVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           ++   +M   G+ PN+ TY +L+    +   I++   I  ++    V+ D   F+ +I  
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGV 406

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             + G + +    F  M+    VPDN+ +  +I  +   G    A  + ++M+A
Sbjct: 407 LARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 114 CQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           C T  K     G C+  +  +A      M+S+G+ P    Y  L+  Y +   L++AF  
Sbjct: 610 CNTLIK-----GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFIL 664

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           IN+M+     + ++ TY++++       +    E++L +M  +GI     TY+++I+G+ 
Sbjct: 665 INEMEK-RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHV 723

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIF 257
                +E       M++ G    D F
Sbjct: 724 SQDNMKEAFRFHDEMLQRGLVPDDRF 749


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 190/420 (45%), Gaps = 46/420 (10%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLF 137
           P+L+ L      K+   A+ I  +LR+          F+  +++ G C +   ++A  L 
Sbjct: 131 PLLKGL---CADKRTSDAMDI--VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 138 EVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++M  DG    P V  YT +++ + + G LD+A+ T ++M       P+V TYS +I + 
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD-RGILPNVVTYSSIIAAL 244

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    D   ++L  M   G+  +  TYN+I+ GY  + + +E    F   + S G  PD
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE-AIGFLKKMHSDGVEPD 303

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++     +G   +  K ++     G+K +I T   L + Y   G   +M  ++D
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P    ++I+I  + K G +++    F KM+ +G+ P+++TY +++    K+G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 376 LIM-----------------------------------KVDSILRQVENSDVILDTPFFN 400
            +                                    K   ++ ++ +  + LDT FFN
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            II ++ + G V +  +LF  M      PD IT++T+I  Y   G  + A  L   M+++
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 236
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++   ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 145/327 (44%), Gaps = 8/327 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+    K  + +QA L+F  M   GL P    Y  ++    +SG +++A      M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI S   F ++D  ++++ EM   GI    + +N+IID + K  +
Sbjct: 436 ID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   PDI T +++I  Y  +G +++  K       +G+K D  T N
Sbjct: 495 VIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYN 553

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +    +    +   M+     P ++TYNI+++   +       +E +  +   
Sbjct: 554 TLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES 613

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  
Sbjct: 614 GTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQ 439
           ++  +LF  +     VPD  T++ M +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE 697



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C+T+  ++       QP++A    + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KP++ TY  L++          +  +L  M   GI  +   ++ +I  Y K 
Sbjct: 329 SMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K ++    FS M +  G +PD  T  ++I     SG +E   +++ +     +      
Sbjct: 388 GKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  S      +DK + ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A   FE M+ + L P  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+ +       D+A   I +M     C                            
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDL 504

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TYS LI       + D   K+LA M  +G++   VTYNT+I+GY K  +
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 565 MEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F  +  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + GL+ ++D +   +E +    ++   N I+    Q GD+ +
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 743 AGTYLFMIDEKH 754


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 3/342 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           + ++     + ++P +A  LF+VML  G +  ++ Y AL+ AY ++   ++A  T   ++
Sbjct: 325 YIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQ 384

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                 PDV ++S LI +C    + +   ++L  M     + + V++  ++  Y K   +
Sbjct: 385 D-KGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNW 443

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+ E  F AM++SG C P+     S++SAY      +K+     +   +G+K D+   + 
Sbjct: 444 EKAEEIFHAMLDSG-CPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWST 502

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
              +  +AG ++        M K    P +VTY+ +I+ +G  G  EK E  FK M   G
Sbjct: 503 TISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVG 562

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKM 415
           ++PN    C+L+ AY K   + KV      +E    V  D   +  I  A    G+ ++ 
Sbjct: 563 IRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRA 622

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +    M+   C PD++ + T+I  Y A G  + A  +  +M
Sbjct: 623 VKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERM 664



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 157/343 (45%), Gaps = 37/343 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  LMV  G+C   + A  LFE M   G+ P    +T LVSA   +GL D A S I DM
Sbjct: 254 TFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFI-DM 312

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                    ++ Y  +  +C +  +      +   M   G E    +YN ++  Y +  +
Sbjct: 313 MQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQ 372

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E+   +F   ++  G  PD+ + +S+ISA  N                           
Sbjct: 373 WEDAMRTF-IWIQDKGLTPDVMSWSSLISACAN--------------------------- 404

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                   AG  ++   V++ M+     P VV++  +++ + K G+ EK EE F  M   
Sbjct: 405 --------AGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDS 456

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN + +CSL+SAY K     KV   + ++E   + LD   ++  ISA  +AG  E  
Sbjct: 457 GCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELA 516

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            E F  M +  C+P+ +T++++I+AY  +G+ E A+++   M+
Sbjct: 517 EEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLML 559



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 142/333 (42%), Gaps = 38/333 (11%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTYSILIKSCTKFHRFDL 203
           +P  D+   L  A       ++  S  + MK V++   + DV + ++++    +   +  
Sbjct: 141 EPPNDILHNLAKAVAVRVASEKLNSDEDVMKIVNETGLRVDVRSMNVVVWQLGQMQNWYA 200

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             K+       G+E +A    T+I   G  ++  +    F  M E  G    IFT N+++
Sbjct: 201 ATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWM-EKAGIERPIFTFNALM 259

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF- 322
            A G   + +   + + E   +G+  D  T   L  +   AG++D+ +S +D MQ R F 
Sbjct: 260 VACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFS 319

Query: 323 -------------------------FPTVV---------TYNIVIETFGKAGHIEKMEEY 348
                                    F  ++         +YN ++  + +    E     
Sbjct: 320 IGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRT 379

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F  ++ +G+ P+ +++ SL+SA + AG   +   +L +++ SD   +   +  ++ AY +
Sbjct: 380 FIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQK 439

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            G+ EK  E+F  M +  C P+ + + +++ AY
Sbjct: 440 TGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAY 472



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 69/147 (46%)

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           VM  + +      V + N+V+   G+  +     + F+  +  G++PN+    +L++A  
Sbjct: 169 VMKIVNETGLRVDVRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALG 228

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
               + +   + R +E + +      FN ++ A G+    +   ELF  M++   VPD I
Sbjct: 229 CGRRLSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRI 288

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           TF  ++ A  A G+ + AQ+  + M A
Sbjct: 289 TFTGLVSATTAAGLWDRAQSFIDMMQA 315


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 168/354 (47%), Gaps = 2/354 (0%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           + ++   QT++ LMV LGK +  +    L + M + GLKP+V  +T  +   G++G ++E
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A+  +  M     C PDV TY++LI +     + D  +++  +M     +   VTY T++
Sbjct: 277 AYEILKRMDD-EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLL 335

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           D +   +  + ++  +S M E  G  PD+ T   ++ A   +GN  +     +     G+
Sbjct: 336 DRFSDNRDLDSVKQFWSEM-EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGI 394

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             ++ T N L     R    D    +   M+     PT  TY + I+ +GK+G      E
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F+KMK +G+ PN +   + + + +KAG   +   I   +++  ++ D+  +N ++  Y 
Sbjct: 455 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           + G++++  +L   M E  C PD I   ++I         + A  +  +M  MK
Sbjct: 515 KVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 568



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 181/372 (48%), Gaps = 10/372 (2%)

Query: 88  AIKQKKWQL-ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
            +KQ  + L  ++ FG +     Y         L+ +L K +   +A  ++  M+ +G +
Sbjct: 168 GLKQAPYALRKMREFGFVLNAYSYNG-------LIHLLLKSRFCTEAMEVYRRMILEGFR 220

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PS+  Y++L+   G+   +D     + +M+++   KP+VYT++I I+   +  + +   +
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG-LKPNVYTFTICIRVLGRAGKINEAYE 279

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           IL  M   G     VTY  +ID    A+K +  +  F  M ++G   PD  T  +++  +
Sbjct: 280 ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM-KTGRHKPDRVTYITLLDRF 338

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            ++ +++ ++++++E    G   D+ T  IL  +  +AG + +    +D M+ +   P +
Sbjct: 339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            TYN +I    +   ++   E F  M+  G+KP + TY   +  Y K+G  +       +
Sbjct: 399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++   +  +    N  + +  +AG   +  ++F  +K+   VPD++T+  M++ Y+ +G 
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518

Query: 447 TEAAQNLENKMI 458
            + A  L ++M+
Sbjct: 519 IDEAIKLLSEMM 530



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 161/354 (45%), Gaps = 3/354 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D     +K   A ++F  ++  +    R  T+  L+      +  +     +  M  DG
Sbjct: 300 IDALCTARKLDCAKEVFEKMKTGRHKPDRV-TYITLLDRFSDNRDLDSVKQFWSEMEKDG 358

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V  +T LV A  ++G   EAF T++ M+      P+++TY+ LI    + HR D  
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD-QGILPNLHTYNTLICGLLRVHRLDDA 417

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M  LG++ +A TY   ID YGK+        +F  M ++ G  P+I   N+ + 
Sbjct: 418 LELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM-KTKGIAPNIVACNASLY 476

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           +   +G   + ++ +     +G+  D  T N++ K Y + G  D+   ++  M +    P
Sbjct: 477 SLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP 536

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V+  N +I T  KA  +++  + F +MK   +KP  +TY +L++   K G I +   + 
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             +       +T  FN +     +  +V    ++   M +  CVPD  T+ T+I
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 158/349 (45%), Gaps = 4/349 (1%)

Query: 88   AIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
            + K      A  +F    +    Q +  T+  L+  L +    E A  +F  + S G  P
Sbjct: 759  SCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIP 818

Query: 148  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-DLIEK 206
             V  Y  L+ AYG+SG +DE F    +M S  +C+ +  T++I+I    K     D ++ 
Sbjct: 819  DVATYNFLLDAYGKSGKIDELFELYKEM-STHECEANTITHNIVISGLVKAGNVDDALDL 877

Query: 207  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
                MS      +A TY  +IDG  K+ +  E +  F  M++  GC P+    N +I+ +
Sbjct: 878  YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY-GCRPNCAIYNILINGF 936

Query: 267  GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            G +G  +     +      GV+ D++T ++L       G  D+       +++    P V
Sbjct: 937  GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDV 996

Query: 327  VTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
            V YN++I   GK+  +E+    F +MK  RG+ P+  TY SL+     AG++ +   I  
Sbjct: 997  VCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYN 1056

Query: 386  QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
            +++ + +  +   FN +I  Y  +G  E    ++ TM      P+  T+
Sbjct: 1057 EIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 155/328 (47%), Gaps = 3/328 (0%)

Query: 133  ASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            A  LFE    D G++P +  Y  L+    ++ +++ A      +KS + C PDV TY+ L
Sbjct: 768  ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKS-TGCIPDVATYNFL 826

Query: 192  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
            + +  K  + D + ++  EMS    E + +T+N +I G  KA   ++    +  ++    
Sbjct: 827  LDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 886

Query: 252  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              P   T   +I     SG + + ++ +      G + +    NIL   +G+AG  D   
Sbjct: 887  FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946

Query: 312  SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++   M K    P + TY+++++     G +++   YFK++K  G+ P+ + Y  +++  
Sbjct: 947  ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006

Query: 372  SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K+  + +   +  +++ S  I  D   +N +I   G AG VE+ G+++  ++     P+
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPN 1066

Query: 431  NITFATMIQAYNALGMTEAAQNLENKMI 458
              TF  +I+ Y+  G  E A  +   M+
Sbjct: 1067 VFTFNALIRGYSLSGKPEHAYAVYQTMV 1094



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 166/413 (40%), Gaps = 74/413 (17%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K  +  +A  +F  +   GL P    Y  ++  Y + G +DEA   +++M   + C+P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME-NGCEP 536

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV   + LI +  K  R D   K+   M  + ++ + VTYNT++ G GK  K +E    F
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596

Query: 244 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 269
             MV+ G                                  GC PD+FT N++I     +
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-DKMRSVMDFM----------- 317
           G +++   ++++   + V  D  TL  L     +A +  D  + + +F+           
Sbjct: 657 GQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLF 715

Query: 318 ---------------QKRFFFPTVVTYNI----------VIETFGKAGHIEKMEEYFKKM 352
                              F   +V   I          +I    K  ++      F+K 
Sbjct: 716 WEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKF 775

Query: 353 -KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
            K  G++P   TY  L+    +A +I     +  QV+++  I D   +N ++ AYG++G 
Sbjct: 776 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGK 835

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++++ EL+  M    C  + IT   +I      G  + A +L   +++ ++ S
Sbjct: 836 IDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 888



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 137/327 (41%), Gaps = 2/327 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+ + +F++M    +K   + Y  +  +    G L +A   +  M+       + Y+Y+ 
Sbjct: 135 EEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVL-NAYSYNG 193

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K        ++   M   G   S  TY++++ G GK +  + +      M E+ 
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETL 252

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+++T    I   G +G I +  +     +  G   D+ T  +L  +   A   D  
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + V + M+     P  VTY  +++ F     ++ +++++ +M+  G  P+ +T+  LV A
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA 372

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             KAG   +    L  + +  ++ +   +N +I    +   ++   ELF  M+     P 
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
             T+   I  Y   G + +A     KM
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKM 459



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 3/227 (1%)

Query: 234 KKFEEMESSFSAMVESGGCHPDIFT---LNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           K F + +SSFS      G    + T    N M+ A    G +E+M   ++      +K D
Sbjct: 93  KSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRD 152

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   + KS    G   +    +  M++  F     +YN +I    K+    +  E ++
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 212

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M   G +P+  TY SL+    K   I  V  +L+++E   +  +   F   I   G+AG
Sbjct: 213 RMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG 272

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            + +  E+   M +  C PD +T+  +I A       + A+ +  KM
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319


>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 156/342 (45%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI+   V YN++I+ +GKAK F E  S  S M E+G            
Sbjct: 62  KAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG     ++ +K +     +G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M +RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 163/371 (43%), Gaps = 39/371 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+KP +  Y ++++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             +   PD  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 E-AGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F +M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWSM-RKVGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  M  R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 282 SSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+      D+   + ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFSDSNVISLVLNAYG 401

Query: 443 ALGMTEAAQNL 453
            L   + A ++
Sbjct: 402 KLHEFDKANDM 412



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS + +  G  PD+   NSMI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRL-KRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++R   P   TY+ +I  FGK G  +    + +KM+   +  + + Y +L+    K    
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K  SI  +++ + +  D   +N +I+ +G+A    +   L   M+E   VPD ++++T+
Sbjct: 61  SKAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 438 IQAY 441
           +  Y
Sbjct: 121 LTMY 124


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 177
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 2   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 61

Query: 178 ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 62  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYST 121

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 122 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 240

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I A
Sbjct: 241 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 300

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 341



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 170/364 (46%), Gaps = 43/364 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 49  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 108

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 109 T-AGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 167

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---T 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM  K  +Q   T
Sbjct: 168 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVT 223

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 224 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 283

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
             G++ + + Y +++ AY +AGL+     +L ++++ D I  DT     I++  G+    
Sbjct: 284 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIH--ILAGAGRIEEA 341

Query: 409 ---------AGDV------EKMGELFLTMKERHCV-------------PDNITFATMIQA 440
                    AG+V      E+M  LF   K+   V             PD+   A ++ A
Sbjct: 342 TYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNA 401

Query: 441 YNAL 444
           Y  L
Sbjct: 402 YGKL 405



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 9   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 68

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 69  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 127

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 128 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 187

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 188 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 247

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 248 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 282



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 153/366 (41%), Gaps = 40/366 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 65  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 123

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 124 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 182

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 183 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 242

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +++ G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 243 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 302

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  ++     P  +  +  I     AG IE+    F++    G   +  
Sbjct: 303 RAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 358

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K   +++ M
Sbjct: 359 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEM 418

Query: 423 KERHCV 428
           +E  CV
Sbjct: 419 QEVGCV 424


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 171/344 (49%), Gaps = 8/344 (2%)

Query: 102 GLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           GLL++ +  +A CQ    T++ ++    K ++  +A  +F  M   G+ P +  Y +L+ 
Sbjct: 224 GLLKKME--EAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQ 281

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                    EA + +N+M+S+ +  PD+ T+++L+ +  K  +    + +L  M+ +G+E
Sbjct: 282 GLCNFSQWKEASALLNEMRSL-NIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVE 340

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
              VTY++++ GY    +  E    F AM+ + GC PD+F+ N +I+ Y     I++ ++
Sbjct: 341 PDVVTYSSLMYGYSLRSEVVEARKLFDAMI-TKGCKPDVFSYNILINGYCKVKRIDEAKQ 399

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            +NE    G+  +  + N L     + G   + R++   M      P + TY+I+++ F 
Sbjct: 400 LFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFC 459

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G+  K    F+ M+    KPN + Y  L+ A  K+G +     +  ++    +  +  
Sbjct: 460 KQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQ 519

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +  II+   + G +++  E F  M+E  C PD I++  +I+ +
Sbjct: 520 IYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGF 563



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  L K  +  QA  LF+ M++ G +P V  YT +++   + G    A   +  M
Sbjct: 170 TFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKM 229

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C+P+V TYS +I S  K  R +    I + M   GI     TYN++I G     +
Sbjct: 230 EE-AGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E  +  + M  S    PDI T N ++      G + + +        MGV+ D+ T +
Sbjct: 289 WKEASALLNEM-RSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYS 347

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y       + R + D M  +   P V +YNI+I  + K   I++ ++ F +M H+
Sbjct: 348 SLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQ 407

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN+++Y +L+    + G + +  ++ + +  +  + +   ++ ++  + + G   K 
Sbjct: 408 GLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKA 467

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             LF  M+  +  P+ + +  +I A    G    A+ L
Sbjct: 468 FRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKL 505



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 159/349 (45%), Gaps = 8/349 (2%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
            R   +T   ++ G CK  E A+   L + M   G +P+V  Y+ ++ ++ +   ++EA 
Sbjct: 199 CRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEAL 258

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
              + MK V    PD++TY+ LI+    F ++     +L EM  L I    VT+N ++D 
Sbjct: 259 DIFSYMK-VKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             K  K  E +     M E G   PD+ T +S++  Y     + +  K ++     G K 
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMG-VEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKP 376

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+ + NIL   Y +    D+ + + + M  +   P  V+YN +I    + G + +    F
Sbjct: 377 DVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLF 436

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M   G  PN  TY  L+  + K G   K   + R ++++    +   +N +I A  ++
Sbjct: 437 KNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS 496

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAAQNLE 454
           G++    +LF  +  +   P+   + T+I      G+     EA +N+E
Sbjct: 497 GNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNME 545



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 156/341 (45%), Gaps = 40/341 (11%)

Query: 120 LMVMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           L +++      ++  L F V+   +  GL+P++  +T L++   + G   +A    +DM 
Sbjct: 136 LSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMV 195

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +   C+PDVYTY+ +I    K         +L +M   G + + VTY+TIID + K ++ 
Sbjct: 196 A-RGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRV 254

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E    FS M +  G  PDIFT NS+I    N    ++     NE         +++LNI
Sbjct: 255 NEALDIFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE---------MRSLNI 304

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +                          P +VT+N++++T  K G + + +   K M   G
Sbjct: 305 M--------------------------PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMG 338

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           ++P+ +TY SL+  YS    +++   +   +       D   +N +I+ Y +   +++  
Sbjct: 339 VEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAK 398

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +LF  M  +   P+N+++ T+I     LG    A+NL   M
Sbjct: 399 QLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNM 439



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 36/322 (11%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  ML     P +  +T L+SA  + G   +   ++     ++   P++YT SILI   +
Sbjct: 85  FNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFS 144

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
              R DL   +LA++  LG++ + VT+ T+I+   K  KF +    F  MV + GC PD+
Sbjct: 145 HLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMV-ARGCRPDV 203

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T  ++I+     G                            ++   AG+  KM      
Sbjct: 204 YTYTTIINGLCKIG----------------------------ETAAAAGLLKKM------ 229

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
            ++    P VVTY+ +I++  K   + +  + F  MK +G+ P+  TY SL+        
Sbjct: 230 -EEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             +  ++L ++ + +++ D   FN ++    + G V +   +  TM E    PD +T+++
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSS 348

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           ++  Y+       A+ L + MI
Sbjct: 349 LMYGYSLRSEVVEARKLFDAMI 370



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 99/240 (41%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           + +  ++    K  ++ +   S +  +E  G  P+I+TL+ +I+ + +   ++       
Sbjct: 98  IQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLA 157

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +   +G++  I T   L     + G + +   + D M  R   P V TY  +I    K G
Sbjct: 158 KIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIG 217

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
                    KKM+  G +PN +TY +++ ++ K   + +   I   ++   +  D   +N
Sbjct: 218 ETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYN 277

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I         ++   L   M+  + +PD +TF  ++      G    AQ +   M  M
Sbjct: 278 SLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEM 337



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 2/163 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
            +A  LF+ M ++G  P++  Y+ L+  + + G   +AF     M+S    KP++  Y+I
Sbjct: 430 REARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS-KPNLVMYNI 488

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI +  K        K+ +E+   G++ +A  Y TII+G  K    +E   +F  M E  
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNM-EED 547

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           GC PD  + N +I  + +  +  +  +   E    G  AD+ T
Sbjct: 548 GCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 164/334 (49%), Gaps = 4/334 (1%)

Query: 127  CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
            CKQ +  +A  L +   S G+      Y +L+       L+D A     +MK +  C PD
Sbjct: 810  CKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELG-CGPD 868

Query: 185  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             +TY++L+ +  K  R + + K+  EM   G E + VTYNTII G  K+++ E+    + 
Sbjct: 869  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 928

Query: 245  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             ++ S G  P   T   ++     +G IE  E  +NE    G KA+    NIL   +  A
Sbjct: 929  NLM-SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIA 987

Query: 305  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            G  +K+  +   M  +   P + +Y I+I+T  KAG +     YF+++   G++P+ ITY
Sbjct: 988  GNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITY 1047

Query: 365  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
              L+    K+  + +  S+  +++   ++ +   +N +I   G+AG   + G+++  +  
Sbjct: 1048 NLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT 1107

Query: 425  RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +   P+  T+  +I+ Y+  G T++A     +MI
Sbjct: 1108 KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMI 1141



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 152/324 (46%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  +++VM+ DG+ PSV  Y+ L+ A+G+   ++     + +M
Sbjct: 241 TYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 300

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    KP+VY+Y+I I+   +  RFD   +ILAEM   G +   +T+  +I     A +
Sbjct: 301 EA-HGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGR 359

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M +S    PD  T  +++  + ++G  + + + +N     G   ++    
Sbjct: 360 ISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYT 418

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  + G   +   + D M+++   P   +YN +I  F KA       E FK M   
Sbjct: 419 AVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIH 478

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G KPN  T+   ++ Y K+G  +K       +++  ++ D    N ++    ++G +   
Sbjct: 479 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMA 538

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
             +F  +K     PD IT+  MI+
Sbjct: 539 KRVFHELKAMGVSPDTITYTMMIK 562



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 167/377 (44%), Gaps = 35/377 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV  GK +  E    L   M + G+KP+V  YT  +   GQ+   DEA+  + +
Sbjct: 275 RTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAE 334

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--- 231
           M++   CKPDV T+++LI+      R    + +  +M     +   VTY T++D +    
Sbjct: 335 MEN-EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNG 393

Query: 232 ------------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLN 260
                       KA  + +   +++A++++                    G  P+ ++ N
Sbjct: 394 ESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 453

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+IS +  +       + +   ++ G K +  T  +    YG++G   K     + M+ +
Sbjct: 454 SLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 513

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV  N V+    K+G +   +  F ++K  G+ P++ITY  ++   SKA    + 
Sbjct: 514 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 573

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I   +  ++ + D    N +I    +AG  ++  ++F  +KE +  P + T+ T++  
Sbjct: 574 VKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAG 633

Query: 441 YNALGMTEAAQNLENKM 457
               G  +   +L  +M
Sbjct: 634 LGREGKVKEVMHLLEEM 650



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 153/323 (47%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+       + +    ++  M +DG   +V  YTA++ A  Q G + EA    ++M
Sbjct: 381 TYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 440

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P+ Y+Y+ LI    K  RF    ++   M   G + +  T+   I+ YGK+ +
Sbjct: 441 KQ-KGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGE 499

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    +  M +S G  PD+   N+++     SG +   ++ ++E   MGV  D  T  
Sbjct: 500 SIKAIQRYELM-KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYT 558

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K   +A  +D+   +   M +    P V+  N +I+T  KAG  ++  + F ++K  
Sbjct: 559 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEM 618

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P   TY +L++   + G + +V  +L ++ +S+   +   +N I+    + G V   
Sbjct: 619 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 678

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++  +M  + C+PD  ++ T+I
Sbjct: 679 LDMLYSMTTKGCIPDLSSYNTVI 701



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 151/355 (42%), Gaps = 2/355 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+Q  +A   TF  +   LG       A +   VM   G+  +   Y  LV    +SG  
Sbjct: 196 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 255

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA      M  V    P V TYS+L+ +  K    + +  +L EM   G++ +  +Y  
Sbjct: 256 REALEVYKVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 314

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            I   G+A++F+E     + M E+ GC PD+ T   +I    ++G I   +  + +    
Sbjct: 315 CIRVLGQARRFDEAYRILAEM-ENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 373

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
             K D  T   L   +   G    +  + + M+   +   VV Y  VI+   + G + + 
Sbjct: 374 DQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 433

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E F +MK +G+ P   +Y SL+S + KA        + + ++      +       I+ 
Sbjct: 434 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINY 493

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           YG++G+  K  + +  MK +  VPD +    ++      G    A+ + +++ AM
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 548



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 2/258 (0%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
             ++ Y++   T+  ++  L K ++ EQA  L+  ++S G  P+   Y  L+    ++G +
Sbjct: 896  HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 955

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            ++A +  N+M     CK +   Y+IL+         + +  +  +M   GI     +Y  
Sbjct: 956  EDAENLFNEMLEYG-CKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTI 1014

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            IID   KA +  +  + F  ++E G   PD+ T N +I   G S  +E+    +NE    
Sbjct: 1015 IIDTLCKAGQLNDGLTYFRQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1073

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G+  ++ T N L    G+AG   +   + + +  + + P V TYN +I  +  +G  +  
Sbjct: 1074 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1133

Query: 346  EEYFKKMKHRGMKPNSIT 363
               + +M   G  PNS T
Sbjct: 1134 YAAYGRMIVGGCLPNSST 1151



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 123/282 (43%), Gaps = 42/282 (14%)

Query: 51   LSKILRTEFAIKNIEKKVSSKKYKNLWP--KPVLEALDEAIKQKKWQLALKIFGLLRQQQ 108
            + K +R E  +K +++++  K Y++ +     ++  L   +K ++ + A+ ++  L  Q 
Sbjct: 879  MGKSMRIEEMLK-VQEEMHRKGYESTYVTYNTIISGL---VKSRRLEQAIDLYYNLMSQG 934

Query: 109  WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
            +    C T+  L+  L K  + E A  LF  ML  G K +  +Y  L++ +  +G  ++ 
Sbjct: 935  FSPTPC-TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKV 993

Query: 169  FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
                 DM       PD+ +Y+I+I +  K  + +       ++  +G+E   +TYN +ID
Sbjct: 994  CHLFQDMVD-QGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLID 1052

Query: 229  GYGKAKKFEEMESSFSAMVESG----------------------------------GCHP 254
            G GK+K+ EE  S F+ M + G                                  G  P
Sbjct: 1053 GLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKP 1112

Query: 255  DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            ++FT N++I  Y  SG+ +     Y    + G   +  T +I
Sbjct: 1113 NVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/409 (19%), Positives = 157/409 (38%), Gaps = 38/409 (9%)

Query: 85   LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
            +D   K  +   A +IF  L++    +    T+  L+  LG+  + ++   L E M    
Sbjct: 596  IDTLYKAGRGDEAWQIFYQLKEMNL-EPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 654

Query: 145  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
              P++  Y  ++    ++G +++A   +  M +   C PD+ +Y+ +I    K  R++  
Sbjct: 655  YPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIPDLSSYNTVIYGLVKEERYNEA 713

Query: 205  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------------------------ME 240
              I  +M  + I   A T  TI+  + K    +E                        ME
Sbjct: 714  FSIFCQMKKVLIPDYA-TLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLME 772

Query: 241  S-----------SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                         F+ ++ S G   D F L  +I          +  +   +F   GV  
Sbjct: 773  GILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSL 832

Query: 290  DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
               + N L        + D    +   M++    P   TYN++++  GK+  IE+M +  
Sbjct: 833  KTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQ 892

Query: 350  KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            ++M  +G +   +TY +++S   K+  + +   +   + +         +  ++    +A
Sbjct: 893  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 952

Query: 410  GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G +E    LF  M E  C  +   +  ++  +   G TE   +L   M+
Sbjct: 953  GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 1001



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 83/200 (41%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + N M+    + G +  M + ++      VKA++ T   +    G  G        +  M
Sbjct: 171 SCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 230

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++        TYN ++    K+G   +  E +K M   G+ P+  TY  L+ A+ K   +
Sbjct: 231 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDV 290

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +LR++E   V  +   +   I   GQA   ++   +   M+   C PD IT   +
Sbjct: 291 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVL 350

Query: 438 IQAYNALGMTEAAQNLENKM 457
           IQ     G    A+++  KM
Sbjct: 351 IQVLCDAGRISDAKDVFWKM 370


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 177
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 178 ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYST 122

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 241

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I A
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 10  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 70  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 128

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 129 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 188

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   +   ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 189 SYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 249 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 283



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 157/373 (42%), Gaps = 41/373 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 66  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 124

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 125 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 184 EPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +++ G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 244 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 303

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  ++     P  +  +  I     AG IE+    F++    G   + +
Sbjct: 304 RAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIM 359

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K   +++ M
Sbjct: 360 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEM 419

Query: 423 KERHCV-PDNITF 434
           +E  CV  D + F
Sbjct: 420 QEVGCVFSDEVHF 432



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 82/174 (47%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
               K    F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 140/277 (50%), Gaps = 1/277 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEME 240
           +P+  TY+ +I       R     +++ EM   G I     TY T+I G+ K  + E+  
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAA 203

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M+  G   P     N++I  Y + G ++   ++  +    GV   + T N+L  +
Sbjct: 204 KVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHA 263

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G      +V++ MQ+    P V TYNI+I  + K G+ +K  E F++M  +G++  
Sbjct: 264 LFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRAT 323

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           ++TY SL+ A+S+ G + + D + +      +  D   +N +I+++   GD+E+  E+  
Sbjct: 324 AVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMA 383

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M+++   PD++T+ T+I+ +  LG  + A+ L ++M
Sbjct: 384 EMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEM 420



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 6/316 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      PD YTY+ LI    K  R +   K+  EM   G +  SAV YN +I GY    
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRG 233

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +        MV+ G     + T N ++ A    G          E    G+  D+ T 
Sbjct: 234 KLDVALQYREDMVQRGVAM-TVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTY 292

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NIL   Y + G   K   V + M ++    T VTY  +I  F + G +++ +  FK    
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVK 352

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G++P+ + Y +L++++   G + +   I+ ++E   +  D   +N +I  +   G +++
Sbjct: 353 KGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDE 412

Query: 415 MGELFLTMKERHCVPD 430
              L   M +R   PD
Sbjct: 413 ARGLIDEMTKRGIQPD 428



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 134/317 (42%), Gaps = 44/317 (13%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL++   +R++        T+  L+    K  + E A+ +F+ ML+ G + PS 
Sbjct: 160 RGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSA 219

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDM----------------------KSVSDC------ 181
            +Y AL+  Y   G LD A     DM                         SD       
Sbjct: 220 VMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEE 279

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV+TY+ILI    K        ++  EMS  G+  +AVTY ++I  + +  +
Sbjct: 280 MQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQ 339

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E +  F   V+  G  PD+   N++I+++   G++E+  +   E     +  D  T N
Sbjct: 340 VQETDRLFKVAVKK-GIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYN 398

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + +   G  D+ R ++D M KR   P +           K G  +  E   K+M  +
Sbjct: 399 TLIRGFCLLGRLDEARGLIDEMTKRGIQPDL--------GLCKNGQGDDAENLMKEMVGK 450

Query: 356 GMKPNSITYCSLVSAYS 372
           G+ P+  TY SL+   +
Sbjct: 451 GITPDDSTYISLIEGLT 467



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+   + AL++F  +  ++  +A   T+T L+    +  Q ++   LF+V +  G++P V
Sbjct: 301 KEGNEKKALEVFEEM-SRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDV 359

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL++++   G ++ AF  + +M+      PD  TY+ LI+      R D    ++ 
Sbjct: 360 VMYNALINSHCAGGDMERAFEIMAEMEK-KRIPPDDVTYNTLIRGFCLLGRLDEARGLID 418

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           EM+  GI+           G  K  + ++ E+    MV   G  PD  T  S+I
Sbjct: 419 EMTKRGIQPDL--------GLCKNGQGDDAENLMKEMV-GKGITPDDSTYISLI 463


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 37/349 (10%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           KP+V++Y+ ++ A  +  L+ EA+   ++M +V     DV TYS LI       +     
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEM-TVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +L EM    I     TY  ++D  GK  K +E +S  + M+++    PD+FT N++++ 
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC-VKPDVFTYNTLMNG 561

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           Y     ++K +  +N  +LMGV  D+ T  IL   + ++ M D+  ++   M ++   P 
Sbjct: 562 YLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPD 621

Query: 326 -----------------------------------VVTYNIVIETFGKAGHIEKMEEYFK 350
                                              V+TYN +I+   K GH++K    F 
Sbjct: 622 TVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFN 681

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           KMK +G++PN+ T+  L+    K G +     + + +      LD   +N +I  + + G
Sbjct: 682 KMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQG 741

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +E+   +   M+E  C+P+ +TF  +I A       + A+ L  +MIA
Sbjct: 742 LLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIA 790



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 176/391 (45%), Gaps = 6/391 (1%)

Query: 71  KKYKNLWPKPVLEALDEAIKQK-KWQLALKIFGLLRQQ--QWYQARCQTFTKLMVMLGKC 127
           +K      KP +E  +  I    K+QL  + +GL  +   +   A   T++ L+      
Sbjct: 122 RKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIV 181

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
            + ++A  L  VM+   + P+V  Y  LV A  + G + EA S +  M      K +V T
Sbjct: 182 GKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKSNVIT 240

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           YS L+      +     + +   MS +G+     +YN +I+G+ K K+ ++  + F  M+
Sbjct: 241 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI 300

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            S    P I   N ++ ++    +        +   L G++ D+ TLNIL   +   G  
Sbjct: 301 LSR--FPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQI 358

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
               SV+  + KR + P+ VT N +I+     G ++K   +  K+  +G + N ++Y +L
Sbjct: 359 TFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATL 418

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++   K G       +LR+++      +   ++ II A  +   V +   LF  M  +  
Sbjct: 419 INGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 478

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             D +T++T+I  +  +G  + A  L N+M+
Sbjct: 479 SADVVTYSTLIYGFCIVGKLKEAIGLLNEMV 509



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 6/336 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC---KQPEQASLLFEVMLSDGLKPSV 149
           K+QL  + +GL  +           T   ++ G C   K  E   LL E++L   + P V
Sbjct: 459 KYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKT-INPDV 517

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT LV A G+ G + EA S +  M      KPDV+TY+ L+      +     + +  
Sbjct: 518 RTYTILVDALGKEGKVKEAKSVLAVMLKAC-VKPDVFTYNTLMNGYLLVYEVKKAQHVFN 576

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            MS +G+     TY  +I+G+ K+K  +E  + F  M +     PD  T +S++     S
Sbjct: 577 AMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMV-PDTVTYSSLVDGLCKS 635

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G I  +    +E    G  AD+ T N L     + G  DK  ++ + M+ +   P   T+
Sbjct: 636 GRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTF 695

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            I+++   K G ++  +E F+ +  +G   +   Y  ++  + K GL+ +  ++L ++E 
Sbjct: 696 TILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEE 755

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +  I +   F+ II+A  +  + +K  +L   M  R
Sbjct: 756 NGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIAR 791



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 20/256 (7%)

Query: 120 LMVMLGKCKQPE------------------QASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           L VML  C +P+                  +A  +F  M   G+ P V  YT L++ + +
Sbjct: 540 LAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCK 599

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           S ++DEA +   +M    +  PD  TYS L+    K  R   +  ++ EM   G     +
Sbjct: 600 SKMVDEALNLFKEMHQ-KNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVI 658

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TYN++IDG  K    ++  + F+ M + G   P+ FT   ++      G ++  ++ + +
Sbjct: 659 TYNSLIDGLCKNGHLDKAIALFNKMKDQG-IRPNTFTFTILLDGLCKGGRLKDAQEVFQD 717

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G   D+   N++   + + G+ ++  +++  M++    P  VT++I+I    K   
Sbjct: 718 LLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDE 777

Query: 342 IEKMEEYFKKMKHRGM 357
            +K E+  ++M  RG+
Sbjct: 778 NDKAEKLLRQMIARGL 793



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 157/380 (41%), Gaps = 38/380 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  +  VML   +K +V  Y+ L+  Y     + +A    N M
Sbjct: 205 TYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAM 264

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S+    PDV++Y+I+I    K  R D    +  EM  L      + +N I+D + K K 
Sbjct: 265 -SLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM-ILSRFPPIIQFNKILDSFAKMKH 322

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +     S S  +E  G  PD+FTLN +I+ + + G I        +    G      TLN
Sbjct: 323 YST-AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLN 381

Query: 296 ILTKSYGRAG-------MYDKM-------------------------RSVMDFMQK---R 320
            L K     G        +DK+                         R  +  ++K   R
Sbjct: 382 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGR 441

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P V  Y+ +I+   K   + +    F +M  +G+  + +TY +L+  +   G + + 
Sbjct: 442 LTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEA 501

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L ++    +  D   +  ++ A G+ G V++   +   M +    PD  T+ T++  
Sbjct: 502 IGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNG 561

Query: 441 YNALGMTEAAQNLENKMIAM 460
           Y  +   + AQ++ N M  M
Sbjct: 562 YLLVYEVKKAQHVFNAMSLM 581



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/416 (19%), Positives = 168/416 (40%), Gaps = 52/416 (12%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P ++ +D+A+        LK        + Y     T   L+  L    Q ++A    + 
Sbjct: 37  PSIQNVDDAVSLSVLTKILK--------RGYPPDTVTLNTLIKGLCLKGQVKEALHFHDK 88

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTYSILIKSCTK 197
           +L+ G + +   Y  L++   + G   +  + I  ++ +     KP+V  Y+ +I +  K
Sbjct: 89  LLAQGFQLNQVSYATLINGVCRIG---DTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCK 145

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
           +        + +EM+  GI  + VTY+T+I G+    K +E     + MV     +P++ 
Sbjct: 146 YQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLK-TINPNVC 204

Query: 258 TLNSMISAYGNSG-----------------------------------NIEKMEKWYNEF 282
           T N ++ A    G                                    ++K +  +N  
Sbjct: 205 TYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAM 264

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGH 341
           +LMGV  D+ + NI+   + +    DK  ++  + +  R  FP ++ +N ++++F K  H
Sbjct: 265 SLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSR--FPPIIQFNKILDSFAKMKH 322

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                    +++ +G++P+  T   L++ +   G I    S+L ++        T   N 
Sbjct: 323 YSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNT 382

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I      G V+K       +  +    + +++AT+I     +G T  A  L  K+
Sbjct: 383 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKI 438



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 152/352 (43%), Gaps = 24/352 (6%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++    K K    A  L   +   G++P +     L++ +   G +   FS +  + 
Sbjct: 310 FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKIL 369

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
                 P   T + LIK  C K        FH     +K+LA+    G + + V+Y T+I
Sbjct: 370 K-RGYPPSTVTLNTLIKGLCLKGQVKKALHFH-----DKLLAQ----GFQLNQVSYATLI 419

Query: 228 DGYGKAKKFEEMESSFSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +G     K  +   +   + +  G    P++   +++I A      + +    ++E  + 
Sbjct: 420 NG---VCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVK 476

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+ AD+ T + L   +   G   +   +++ M  +   P V TY I+++  GK G +++ 
Sbjct: 477 GISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEA 536

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +     M    +KP+  TY +L++ Y     + K   +   +    V  D   +  +I+ 
Sbjct: 537 KSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 596

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + ++  V++   LF  M +++ VPD +T+++++      G      +L ++M
Sbjct: 597 FCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM 648



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD  TLN++I      G +++   ++++    G + +  +   L     R G     
Sbjct: 58  GYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIG---DT 114

Query: 311 RSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           R+ + F++K   R   P V  YN +I+   K   + +    F +M  +G+  N +TY +L
Sbjct: 115 RAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTL 174

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  +   G + +   +L  +    +  +   +N ++ A  + G V++   +   M  + C
Sbjct: 175 IYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM-LKAC 233

Query: 428 VPDN-ITFATMIQAYNALGMTEAAQNLENKMIAM 460
           V  N IT++T++  Y  +   + AQ++ N M  M
Sbjct: 234 VKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 267



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%)

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           SV+  + KR + P  VT N +I+     G +++   +  K+  +G + N ++Y +L++  
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G        LR+++      +   +N II A  +   V +   LF  M  +    + 
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           +T++T+I  +  +G  + A  L N M+
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMV 195



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 11/257 (4%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN-----S 261
           +L ++   G     VT NT+I G     + +E       ++  G      F LN     +
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQG------FQLNQVSYAT 103

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+     G+     K+  + +    K +++  N +  +  +  +  +   +   M  + 
Sbjct: 104 LINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
               VVTY+ +I  F   G +++       M  + + PN  TY  LV A  K G + +  
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           S+L  +  + V  +   ++ ++  Y    +V+K   +F  M      PD  ++  MI  +
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 442 NALGMTEAAQNLENKMI 458
             +   + A NL  +MI
Sbjct: 284 CKIKRVDKALNLFKEMI 300


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 161/332 (48%), Gaps = 10/332 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ +  K     +A  + E M   G+ P+  +Y  ++  Y + G    AF    DM
Sbjct: 308 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 367

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            S +  KPD+ TY+IL+ +  K  R D    ++E I A      IE    TY +I+DGY 
Sbjct: 368 VS-AGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIE----TYTSILDGYV 422

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K    ++    F   +++ G  P + + NS++S    +  +E      +E    GV  + 
Sbjct: 423 KGGHIQKALEVFD-RIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNE 481

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           ++   LT+ Y RAG  +K   +   M+K      +V Y  +++   K+G +++  E F++
Sbjct: 482 RSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQ 541

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           +   G+K N ITYC+++  +++ G + K   +L+ ++     LDT  +   I A  ++GD
Sbjct: 542 ITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGD 601

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            E++ E    M+E+    +  T+ T+I  + A
Sbjct: 602 TEEVTETLAVMREKKLEVNARTYTTLIHGWLA 633



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 168/368 (45%), Gaps = 55/368 (14%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T L+    + +  E A    E MLS G++ +  V+ +++S Y  +G  + A       K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +  +  P    Y+ ++++  +    + +E +LA+M   G + +   Y T+++G+ + +  
Sbjct: 229 A-ENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287

Query: 237 EEMESSFSAMVESG--------GCHPDIFTL---------------------NSMISA-- 265
           E+  S F  +   G        GC   +FT                      N MI A  
Sbjct: 288 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMI 347

Query: 266 ---YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
              Y   G+     K + +    G+K DI T NIL  ++ +AG  DK   V++ +Q    
Sbjct: 348 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRL 407

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            PT+ TY  +++ + K GHI+K  E F ++K  G++P  ++Y SL+S  +KA        
Sbjct: 408 LPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKA-------- 459

Query: 383 ILRQVENSDVILDTPFFNCII----------SAYGQAGDVEKMGELFLTMKERHCVPDNI 432
             RQ+EN+ ++LD    N ++            Y +AGDVEK   +F  MK+ +   D +
Sbjct: 460 --RQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 517

Query: 433 TFATMIQA 440
            +  +++A
Sbjct: 518 AYGALLKA 525



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 146/327 (44%), Gaps = 2/327 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E    L   M  +G + ++ +YT +++ + +    ++  S  + +K+     P   TY  
Sbjct: 253 ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG-LSPTAATYGC 311

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++K  TK         IL EM   G+  + + Y  I+DGY +   F      +  MV S 
Sbjct: 312 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV-SA 370

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PDI T N ++ A+  +G ++K            +   I+T   +   Y + G   K 
Sbjct: 371 GLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKA 430

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V D ++     P VV+YN ++    KA  +E       +M   G+ PN  +Y +L   
Sbjct: 431 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEG 490

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y++AG + K   + ++++  ++ +D   +  ++ A  ++G +++  E+F  + +     +
Sbjct: 491 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHN 550

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            IT+ TM+  +   G    A++L   M
Sbjct: 551 RITYCTMLDGWARKGELSKARDLLKDM 577



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 149/327 (45%), Gaps = 2/327 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A   FE M +  +KP+V +YT+L+ AY ++  ++ A +   +M S    + +   +  +I
Sbjct: 150 ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLS-QGIQLNEAVFCSII 208

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
                    +  E    +     +    + YN+I+  Y +A   E +E+  + M E G  
Sbjct: 209 SGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG-F 267

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
             ++    ++++ +    + EK   +++     G+     T   + K + +AG   K   
Sbjct: 268 QGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALD 327

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           +++ M K    P  + Y ++++ + + G      + ++ M   G+KP+ +TY  LV A+ 
Sbjct: 328 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFC 387

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           KAG + K   +L  ++ + ++     +  I+  Y + G ++K  E+F  +K     P  +
Sbjct: 388 KAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVV 447

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           ++ +++         E A+ + ++M+A
Sbjct: 448 SYNSLLSGLAKARQMENARLMLDEMLA 474



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 136/290 (46%), Gaps = 2/290 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  + ++A  + E + ++ L P+++ YT+++  Y + G + +A    + +
Sbjct: 378 TYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRI 437

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K+ +  +P V +Y+ L+    K  + +    +L EM   G+  +  +Y  + +GY +A  
Sbjct: 438 KT-AGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGD 496

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M +      DI    +++ A   SG +++  + + +    G+K +  T  
Sbjct: 497 VEKAFGMFQRMKKEN-LAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYC 555

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   + R G   K R ++  MQK  F    + Y   I+   ++G  E++ E    M+ +
Sbjct: 556 TMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREK 615

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            ++ N+ TY +L+  +  A    +  S   Q + S + LD+   NC++S 
Sbjct: 616 KLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSG 665



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG + K+ +    + K    P +  Y ++++ + + G        F+ M+   +KPN   
Sbjct: 113 AGNWHKIVNAFQVIDK----PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y SL+ AY++A  +    +   ++ +  + L+   F  IIS Y  AG+ E     F   K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             + VP  I + +++QAY   G  E  + L  +M
Sbjct: 229 AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQM 262



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           ++GN  K+    N F ++  K  ++   +L   Y R G     R+  + M+     P V 
Sbjct: 112 DAGNWHKI---VNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVH 167

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y  +I  + +A  +E      ++M  +G++ N   +CS++S Y+ AG     +    + 
Sbjct: 168 IYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKF 227

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
           +  +++     +N I+ AY QAG++E +  L   M+E
Sbjct: 228 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEE 264


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 153/336 (45%), Gaps = 9/336 (2%)

Query: 107 QQWYQARCQ--TFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           Q+     CQ   FT  +++ G C+  Q E+A  L   M   G  P   +Y AL+S Y ++
Sbjct: 31  QEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKA 90

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
               +AF  + +M   + C P V TY+ ++    K  R     K+L EM   G   +  T
Sbjct: 91  KDFGQAFKFLAEMVK-NHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYT 149

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN I++G  + +K +E +     M   G   PD+ T NS I        +++  K+    
Sbjct: 150 YNVIVEGLCEERKLDEAKKMLEEMAVRGY-FPDVVTYNSFIKGLCKCDRVDEARKFLAR- 207

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
             M V  D+ +   +     ++G  D    ++D M  R   P VVTY+ +I+ F K G +
Sbjct: 208 --MPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEV 265

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E+       M   G +PN + Y SL+ A  + G I K + +L ++E      D   +N  
Sbjct: 266 ERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 325

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           I    +A  V+K   +F  M ER C P+  +++ +I
Sbjct: 326 IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 148/310 (47%), Gaps = 5/310 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G + +V  Y  L+    +    D+A +   +M   S C+PD +T++IL++   + ++ + 
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKS-CQPDAFTFAILLRGLCRSNQLEK 60

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             K+L  M  +G       YN +I GY KAK F +     + MV++  C P + T  +++
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNH-CLPTVVTYTNIV 119

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                +       K  +E    G   +I T N++ +        D+ + +++ M  R +F
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVTYN  I+   K   +++  ++  +M    + P+ ++Y ++++   K+G +     +
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRM 236

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L  + N     D   ++ +I  + + G+VE+   L  +M +  C P+ + + +++ A + 
Sbjct: 237 LDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHR 296

Query: 444 LGMTEAAQNL 453
           LG    A+++
Sbjct: 297 LGHIGKAEDM 306



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 150/344 (43%), Gaps = 29/344 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T ++  L K    + AS + + M + G  P V  Y++L+  + + G ++ A   ++ M
Sbjct: 216 SYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +  C+P++  Y+ L+ +  +       E +L EM   G     V+YN  IDG  KA++
Sbjct: 276 LKLG-CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 334

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++ ++ F  MVE G C P+  + + +I                          DI    
Sbjct: 335 VKKAKAVFDRMVERG-CTPNASSYSMLI-------------------------VDILLYT 368

Query: 296 ILTKSYGRAGMYDKMRSVMD-FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +L     + G +D+  ++    + ++   P V  YN+++++  K   I+K  +  K+M  
Sbjct: 369 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +    N +T+  LV        +   +++L  + +   I D   +  ++ A  + G    
Sbjct: 429 KNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAA 487

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ELF    +  CVPD +T++ +I       M E A  L  K++
Sbjct: 488 ALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLV 531



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 61/132 (46%)

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYN ++    +    +K    F++M  +  +P++ T+  L+    ++  + K   +L 
Sbjct: 7   VFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLG 66

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           +++    + D   +N +IS Y +A D  +  +    M + HC+P  +T+  ++       
Sbjct: 67  RMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAE 126

Query: 446 MTEAAQNLENKM 457
            T  A  L ++M
Sbjct: 127 RTRDAVKLLDEM 138



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 68/156 (43%)

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           MG + ++ T N L     R   +DK  +V   M  +   P   T+ I++    ++  +EK
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             +   +MK  G  P+   Y +L+S YSKA    +    L ++  +  +     +  I+ 
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD 120

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
              +A       +L   M+++ C P+  T+  +++ 
Sbjct: 121 GLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEG 156


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 2/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+   +  Y  L++AY + GLL EAF  +N M S    KP ++TY+ +I    K  R+  
Sbjct: 215 GIFADIVTYNTLINAYCREGLLGEAFEVMNSM-SGKGLKPTLFTYNAVINGLCKKGRYVR 273

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            + +  EM  +G+     TYNT++    +   F E +  FS M+  G   PD+ + +S+I
Sbjct: 274 AKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRG-VSPDLISFSSLI 332

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                +G++++   ++ +    G+  D     IL   Y R GM  +   + D M ++   
Sbjct: 333 GVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCA 392

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             VV YN ++    K   +      F +M  RG+ P+  T+ +L+  + K G + K  S+
Sbjct: 393 LDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSL 452

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              +   ++  D   +N +I  + +  ++EK  EL+  M  R   P++I++A ++  Y  
Sbjct: 453 FGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCN 512

Query: 444 LGMTEAAQNLENKMI 458
           LG    A  L ++MI
Sbjct: 513 LGFVSEAFRLWDEMI 527



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 154/326 (47%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+ +  +    +QA + F  M + GL P   +YT L++ Y ++G++ EA   I D 
Sbjct: 327 SFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALE-IRDK 385

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  DV  Y+ ++    K         +  EM   G+     T+ T+I G+ K   
Sbjct: 386 MLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGN 445

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  S F  M +     PDI T N +I  +  +  +EK  + +NE     +  +  +  
Sbjct: 446 MGKALSLFGIMTQKN-IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYA 504

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y   G   +   + D M ++   PT+VT N VI+ + ++G + K +E+  KM   
Sbjct: 505 ILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISE 564

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+SITY +L++ + K   + K   ++ ++E   +  D   +N I++ + + G +++ 
Sbjct: 565 GVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEA 624

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             +   M ER   PD  T+ T+I  Y
Sbjct: 625 ELILRKMIERGIDPDRSTYTTLINGY 650



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+V   +     +A  +F  ML  G+ P +  +++L+    ++G LD+A     DM
Sbjct: 292 TYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDM 351

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K+ S   PD   Y+ILI    +        +I  +M   G     V YNTI++G  K K 
Sbjct: 352 KT-SGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKL 410

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  + F  MVE G   PD  T  ++I  +   GN+ K    +       +K DI T N
Sbjct: 411 LADANALFDEMVERG-VVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYN 469

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   + +    +K   + + M  R  FP  ++Y I++  +   G + +    + +M  +
Sbjct: 470 ILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRK 529

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP  +T  +++  Y ++G + K D  L ++ +  V  D+  +N +I+ + +   ++K 
Sbjct: 530 GIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKA 589

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             L   M+ +   PD +T+  ++  +   G  + A+ +  KMI
Sbjct: 590 FFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMI 632



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 150/345 (43%), Gaps = 8/345 (2%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   V+ G CK+    +A  +F  MLS GL P    Y  L+    ++    EA    +D
Sbjct: 256 FTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSD 315

Query: 175 M--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           M  + VS   PD+ ++S LI   ++    D       +M   G+    V Y  +I+GY +
Sbjct: 316 MLHRGVS---PDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCR 372

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                E       M+E  GC  D+   N++++       +      ++E    GV  D  
Sbjct: 373 NGMMSEALEIRDKMLEQ-GCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFC 431

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   L   + + G   K  S+   M ++   P +VTYNI+I+ F K   +EK  E + +M
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEM 491

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             R + PN I+Y  LV+ Y   G + +   +  ++    +       N +I  Y ++GD+
Sbjct: 492 ISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDL 551

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            K  E    M      PD+IT+ T+I  +      + A  L NKM
Sbjct: 552 SKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 1/280 (0%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S C  D   + +LI+S  +  + +        +   G   S    N+++ G  K    + 
Sbjct: 109 STCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDL 168

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               ++ +  SG    +++TLN M++A      I+ ++ +  +    G+ ADI T N L 
Sbjct: 169 AWEVYNEIARSG-IELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLI 227

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y R G+  +   VM+ M  +   PT+ TYN VI    K G   + +  F +M   G+ 
Sbjct: 228 NAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLS 287

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P++ TY +L+    +    ++   I   + +  V  D   F+ +I    + G +++    
Sbjct: 288 PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMY 347

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           F  MK    VPDN+ +  +I  Y   GM   A  + +KM+
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKML 387



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G C+  +  +A      M+S+G+ P    Y  L++ + +   +D+AF  IN M++  
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMET-K 599

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             +PDV TY++++    +  R    E IL +M   GI+    TY T+I+GY      +E 
Sbjct: 600 GLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEA 659

Query: 240 ESSFSAMVESGGCHPDIF 257
                 M++ G    D F
Sbjct: 660 FRFHDEMLQRGFVPDDDF 677



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/239 (17%), Positives = 99/239 (41%), Gaps = 38/239 (15%)

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +++E +++  S  G++   + ++ +I  Y +A+K  E   +F  ++   G    I   
Sbjct: 97  RVEIVESLISMSSTCGVD--NLVFDLLIRSYVQARKLNEGTDTFK-ILRRKGFLVSINAC 153

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS++      G ++   + YNE    G++ ++ TLNI+                      
Sbjct: 154 NSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIM---------------------- 191

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                        +    K   I+ ++ +   M+ +G+  + +TY +L++AY + GL+ +
Sbjct: 192 -------------VNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGE 238

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
              ++  +    +      +N +I+   + G   +   +F  M      PD  T+ T++
Sbjct: 239 AFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL 297


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 164/369 (44%), Gaps = 41/369 (11%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A L++E M++ G+ P +  YT +V+AY + G +DEAF+ + +M+  S C+P+V TY+ L
Sbjct: 239 KALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMER-SCCEPNVVTYNSL 297

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I            +K+LA MS  GI  ++ TY  +I GY K  + E+ E     M+E   
Sbjct: 298 IDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKN- 356

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              D      +I AY  +G ++   +  +    +G+K +    N L   Y + G  +K  
Sbjct: 357 LFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAA 416

Query: 312 SVM-----------------------------------DFMQKRFFFPTVVTYNIVIETF 336
            V+                                   D M  +    TVVTYN +++  
Sbjct: 417 EVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNL 476

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              GH+E     +  M  RG+ PN +TYC+L+ A+ K G   +   I +   +       
Sbjct: 477 FHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSI 536

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I  + +   + +  E+FL MKE    PD IT+ T+I  Y  +G    A  L++ 
Sbjct: 537 TLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKD- 595

Query: 457 MIAMKENSG 465
              M E  G
Sbjct: 596 ---MSERDG 601



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 160/346 (46%), Gaps = 6/346 (1%)

Query: 115 QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
           +T+T  +++ G CK  Q EQA  L   M+   L     VY  L+ AY  +G +D+A    
Sbjct: 327 RTYT--LLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIR 384

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           + M  V   K +    + LI    K    +   ++L  M    ++  +  YNT++DG+ K
Sbjct: 385 DAMLKVG-LKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCK 443

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            + F +       M  + G +  + T N+++    + G++E     +N  +  GV  +  
Sbjct: 444 QEDFIKAFKLCDEM-HNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEV 502

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   L  ++ + G +D+   +      + F  ++  YN +I  F K   + + +E F KM
Sbjct: 503 TYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKM 562

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  G  P+ ITY +L+  Y K G +++   +    E   +   T  +N +I+   ++ ++
Sbjct: 563 KELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEEL 622

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K+  L   MK R   P+ +T+ ++I  +   GM + A N   KMI
Sbjct: 623 QKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMI 668



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 15/359 (4%)

Query: 109 WYQARCQTFTKLMVM-----LGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           W  A  + FTK + +      G CK  +  QA  +F  M   G  P    Y  L+  Y +
Sbjct: 524 WKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCK 583

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
            G L EA   + DM            Y+ LI    +      +  +LAEM    +  + V
Sbjct: 584 VGNLVEALK-LKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVV 642

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY ++I G+      ++  +++  M++ G   P+I   + ++S+    G I++     ++
Sbjct: 643 TYGSLIAGWCDKGMMDKAYNAYFKMIDKG-IAPNIIIGSKIVSSLYRHGKIDEANLILHQ 701

Query: 282 F-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGK 338
             ++  + A   ++  L KS  R    +  + V  F +K    P    + YNI I    K
Sbjct: 702 IADIDPIAAHAHSVE-LPKSDLRH--LETQKIVDSFGKKAMSIPISNNIVYNIAITGLCK 758

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           + +I+ +      +  +G  P++ TYCSL+ A S  G + +   +   + N+ ++ +   
Sbjct: 759 SKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVV 818

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +N +I+   ++G++++   LF  +  +   P  +T+ T+I  Y   G T  A  L++KM
Sbjct: 819 YNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKM 877



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 127/279 (45%), Gaps = 4/279 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           K+ GLL + +  +      T   ++ G C +   ++A   +  M+  G+ P++ + + +V
Sbjct: 624 KLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIV 683

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S+  + G +DEA   ++ +  +       ++  +            +++    +   + I
Sbjct: 684 SSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPI 743

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + + YN  I G  K+K  +++    S ++  G C PD +T  S+I A    G + +  
Sbjct: 744 S-NNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFC-PDNYTYCSLIHACSAVGKVNEAF 801

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
              ++    G+  +I   N L     ++G  D+ R + + + ++   PTVVTYN +I+ +
Sbjct: 802 CLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGY 861

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            K G   +  E   KM+  G+ P+SITY +L+      G
Sbjct: 862 CKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEG 900



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 137/326 (42%), Gaps = 37/326 (11%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR---- 200
            +P V  Y  +V    ++ +  E    +N++  V  CK + Y  S +       +R    
Sbjct: 128 FRPDVSSYCKIVHILSRARMYKEVRVYLNEL--VVLCKNN-YIASAVWDELVSVYREFSF 184

Query: 201 ----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
               FD+I K+ AE    G+   A+    + D  GK  +                  P +
Sbjct: 185 SPTVFDMILKVFAEK---GMTKFALC---VFDNMGKCGRV-----------------PSL 221

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            + NS++S    +G   K    Y +   +G+  DI +  I+  +Y + G  D+  + +  
Sbjct: 222 RSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKE 281

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P VVTYN +I+ +   G +   ++    M  +G+  NS TY  L+  Y K G 
Sbjct: 282 MERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQ 341

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + + + ++  +   ++ +D   +  +I AY  AG V+    +   M +     + +   +
Sbjct: 342 MEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNS 401

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKE 462
           +I  Y  LG    A  +   +++MK+
Sbjct: 402 LINGYCKLGHVNKAAEV---LVSMKD 424



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 164/365 (44%), Gaps = 9/365 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ + + A K+ G + ++  +      +  L+       + + A  + + ML  GLK + 
Sbjct: 338 KRGQMEQAEKLIGCMMEKNLFVDE-HVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNT 396

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +  +L++ Y + G +++A   +  MK   + KPD Y Y+ L+    K   F    K+  
Sbjct: 397 VICNSLINGYCKLGHVNKAAEVLVSMKD-WNLKPDSYGYNTLLDGFCKQEDFIKAFKLCD 455

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+  + VTYNT++         E     ++ M    G  P+  T  +++ A+   
Sbjct: 456 EMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLM-HKRGVAPNEVTYCTLLDAFFKV 514

Query: 270 GNIEK-MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           G  ++ M  W +  +  G    I   N +   + +     + + +   M++  F P  +T
Sbjct: 515 GTFDRAMMIWKDALS-KGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEIT 573

Query: 329 YNIVIETFGKAGH-IEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           Y  +I+ + K G+ +E ++   K M  R G+  ++  Y SL++   ++  + K++ +L +
Sbjct: 574 YRTLIDGYCKVGNLVEALK--LKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAE 631

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++N ++  +   +  +I+ +   G ++K    +  M ++   P+ I  + ++ +    G 
Sbjct: 632 MKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGK 691

Query: 447 TEAAQ 451
            + A 
Sbjct: 692 IDEAN 696


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 174/351 (49%), Gaps = 14/351 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             +T  +++ G C   E    L  F  M  +G  P+V  Y  L+ AY + G +DEAF  +
Sbjct: 9   NVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLL 68

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             M S    +P++ +Y+++I    +        +IL EM Y G     VTYNT+++GY K
Sbjct: 69  KSMSS-KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
              F +     + MV +G   P + T  ++I++   + N+ +  +++++  + G++ + +
Sbjct: 128 EGNFHQALVIHAEMVRNG-VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYF- 349
           T   L   + R G+ ++   +++ M +  F P+VVTYN  I      GH  +E+MEE   
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH-----GHCVLERMEEALG 241

Query: 350 --KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             ++M  +G+ P+ ++Y +++S + + G + +   + +++    V  D   ++ +I    
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 301

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +   + +  +L   M +    PD  T+ T+I AY   G    A +L ++MI
Sbjct: 302 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMI 352



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 1/280 (0%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S   P+VYTY+ILI+                EM   G   + VTYNT+ID Y K  + +E
Sbjct: 4   SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDE 63

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                 +M  S G  P++ + N +I+     G++++  +   E    G   D  T N L 
Sbjct: 64  AFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 122

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             Y + G + +   +   M +    P+VVTY  +I +  KA ++ +  E+F +M+ RG++
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 182

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN  TY +L+  +S+ GL+ +   IL ++  S        +N  I  +     +E+   +
Sbjct: 183 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 242

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              M E+   PD ++++T+I  +   G  + A  ++ +M+
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMV 282



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 136/365 (37%), Gaps = 94/365 (25%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  + K +   +A   F+ M   GL+P+   YT L+  + + GLL+EA+  +N+M
Sbjct: 152 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 211

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   P V TY+  I       R +    ++ EM   G+    V+Y+TII G+ +  +
Sbjct: 212 TE-SGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 270

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            +        MVE G                                  G  PD FT  +
Sbjct: 271 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 330

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT----------------------- 298
           +I+AY   G++ K    ++E    G   D  T ++L                        
Sbjct: 331 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEE 390

Query: 299 ---------------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
                                      K +   G+  +   V + M +R   P    YN+
Sbjct: 391 SVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNV 450

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I    + G++ K    +K+M H G  P+++T  +L+ A  K G+           E S+
Sbjct: 451 IIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGM---------NEEMSE 501

Query: 392 VILDT 396
           VI DT
Sbjct: 502 VIGDT 506


>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 426

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
           GL P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K + + 
Sbjct: 4   GLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLYDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI    V YN++I+ +GKAK F E  S  S M   G            
Sbjct: 62  KAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG     ++ +K +     MG++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M  RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 163/371 (43%), Gaps = 39/371 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLYDYSKAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            V    PD  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 MVG-VVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F +M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWSM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  M  R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 282 SSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  ++  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 ALGMTEAAQNL 453
            L   + A ++
Sbjct: 402 KLHEFDKANDV 412



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +    +     +E  ++GV  D  + + L   Y 
Sbjct: 67  FSRLKRSGIV-PDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++R   P   TY+ +I  FGK G  +    + +KM+   +  + + Y +L+    K    
Sbjct: 1   RERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDY 60

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K  SI  +++ S ++ D   +N +I+ +G+A    +   L   M+    VPD ++++T+
Sbjct: 61  SKAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTL 120

Query: 438 IQAY 441
           +  Y
Sbjct: 121 LTMY 124



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + RG+ P   TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDY 60

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            K   +F  +K    VPD + + +MI  +    +   A++L ++M
Sbjct: 61  SKAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEM 105


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 3/348 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T L+ +  K      A  LFE M     +P V  YT L+   G++G  DEA++
Sbjct: 258 QPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYN 317

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             ++M+    C+PD    + +I    K  R D   K+  EM  L    S VTYNTII   
Sbjct: 318 FFHEMRR-EGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKAL 376

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M +  G  P  FT + +I  +  +   EK      E +  G   
Sbjct: 377 FESKSRISEISSWFERM-KGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPP 435

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 436 CPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLF 495

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  PN   Y +L+S  ++AG++ +  + +R+++    I D   +N I++   + 
Sbjct: 496 DEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKT 555

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G   +  E+   MK+    PD +++ T++ A +  G+ E A  L  +M
Sbjct: 556 GGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM 603



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            + ++ MLG  K   +A  +F  +     +P+   Y +++      G  ++     N+M 
Sbjct: 158 LSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMS 217

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C PD  TYS LI +  K  R D   ++L EM   G++ +A  Y  +I       + 
Sbjct: 218 NEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNV 277

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G  ++   +++E    G + 
Sbjct: 278 HGALGLFEEMRHQY--------CRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRP 329

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    + + M      P+VVTYN +I+  F     I ++  +
Sbjct: 330 DTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSW 389

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+  TY  L+  + K     K   +L +++          +  +I A G+
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE         +A MI+     G  + A NL ++M
Sbjct: 450 AKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM 498



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 39/348 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R Q + +    T+T+L+  LGK  + ++A   F  M  +G +P   V   ++
Sbjct: 280 ALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMI 338

Query: 157 SAYGQSGLLDEAFSTINDMKSV-----------------------------------SDC 181
           +  G++G LD+A     +M ++                                   S  
Sbjct: 339 NFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGI 398

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++    
Sbjct: 399 SPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHE 458

Query: 242 SFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F  + E+ G     ++ +  MI   G +G ++     ++E N +G   ++   N L   
Sbjct: 459 LFQELKENCGSSSARVYAV--MIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSG 516

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             RAGM D+  + M  MQ+    P + +YNI++    K G   +  E    MK   +KP+
Sbjct: 517 LARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPD 576

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           +++Y +++ A S AGL  +   +++++       D   ++ I+ A G+
Sbjct: 577 AVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 6/228 (2%)

Query: 117 FTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT  +++ G CK  + E+A +L E M   G  P    Y +L+ A G++   D A     +
Sbjct: 403 FTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQE 462

Query: 175 MKSVSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +K   +C       Y+++IK   K  R D    +  EM+ LG   +   YN ++ G  +A
Sbjct: 463 LKE--NCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARA 520

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
              +E  ++   M E G C PDI + N +++    +G   +  +  +      +K D  +
Sbjct: 521 GMLDEALTTMRRMQEHG-CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVS 579

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            N +  +   AG++++   +M  M    F   ++TY+ ++E  GK  H
Sbjct: 580 YNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVDH 627



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 1/237 (0%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I      +++ EM      MV +  C      L+ +I   GN+  I K    + +
Sbjct: 121 TYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQ 180

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 340
             +   +   Q  N +       G Y+K+  + + M      FP  VTY+ +I  F K G
Sbjct: 181 IKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLG 240

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             +       +MK  GM+P +  Y  L++ + K   +     +  ++ +     D   + 
Sbjct: 241 RQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYT 300

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I   G+AG  ++    F  M+   C PD +    MI      G  + A  L  +M
Sbjct: 301 ELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEM 357


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 190/420 (45%), Gaps = 46/420 (10%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLF 137
           P+L+ L      K+   A+ I  +LR+          F+  +++ G C   + ++A  L 
Sbjct: 131 PMLKGL---CADKRTSDAMDI--VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELL 185

Query: 138 EVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++M  DG    P V  YT +++ + + G LD+A+ T ++M       P+V TYS +I + 
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD-RGILPNVVTYSSIIAAL 244

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    D   ++L  M   G+  +  TYN+I+ GY  + + +E    F   + S G  PD
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE-AIGFLKKMHSDGVEPD 303

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++     +G   +  K ++     G+K +I T   L + Y   G   +M  ++D
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P    ++I+I  + K G +++    F KM+ +G+ P+++TY +++    K+G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 376 LIM-----------------------------------KVDSILRQVENSDVILDTPFFN 400
            +                                    K   ++ ++ +  + LDT FFN
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            II ++ + G V +  +LF  M      PD IT++T+I  Y   G  + A  L   M+++
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 543



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 145/327 (44%), Gaps = 8/327 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+    K  + +QA L+F  M   GL P    Y  ++    +SG +++A      M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI S   F ++D  ++++ EM   GI    + +N+IID + K  +
Sbjct: 436 ID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   PDI T +++I  Y  +G +++  K       +G+K D  T N
Sbjct: 495 VIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYN 553

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +    +    +   M+     P ++TYNI+++   +       +E +  +   
Sbjct: 554 TLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES 613

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  
Sbjct: 614 GTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQ 439
           ++  +LF  +     VPD  T++ M +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE 697



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 139/287 (48%), Gaps = 3/287 (1%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEE 238
           C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    ++
Sbjct: 158 CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
              ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N + 
Sbjct: 218 AYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG+K
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++   +
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 397 FSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C+T+  ++       QP++A    + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KP++ TY  L++          +  +L  M   GI  +   ++ +I  Y K 
Sbjct: 329 SMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K ++    FS M +  G +PD  T  ++I     SG +E   +++ +     +      
Sbjct: 388 GKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  S      +DK + ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   +E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A   FE M+ + L P  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+ +       D+A   I +M     C                            
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDL 504

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TYS LI       + D   K+LA M  +G++   VTYNT+I+GY K  +
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 565 MEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F  +  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + GL+ ++D +   +E +    ++   N I+    Q GD+ +
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 743 AGTYLFMIDEKH 754



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 134/333 (40%), Gaps = 7/333 (2%)

Query: 131 EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMK--SVSDCKPDVYT 187
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      +  P++ T
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPA--AAVSRYNRMARAGADEVTPNLCT 93

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y IL+ SC    R DL    L  +   G    A+ +  ++ G    K+  +        +
Sbjct: 94  YGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRM 153

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAG 305
              GC P++F+ N ++    +    ++  +        G     D+ +   +   + + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             DK       M  R   P VVTY+ +I    KA  ++K  E    M   G+ PN  TY 
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           S+V  Y  +G   +    L+++ +  V  D   +N ++    + G   +  ++F +M +R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              P+  T+ T++Q Y   G       L + M+
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 160/333 (48%), Gaps = 8/333 (2%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AF 169
           A  Q F  +M +  +  + + A  L + M    ++P +  +  L++A  +SG L    A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 278

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTII 227
             +++++     +PD  TY+ LI +C++    D    +  EM  +  EC     TYN ++
Sbjct: 279 ELLHEVRQAG-LRPDAITYNTLISACSQGSNLDDAVAVFEEM--IASECRPDLWTYNAMV 335

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
             +G+  K +E E  F  +VE G   PD  T NS++ A+   G++E++E+   E    G 
Sbjct: 336 SVHGRCGKAQEAELMFKELVEKG-FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 394

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + D  T N +   YG+ G  D    + D M+     P  VTY +++++ GK   I +  +
Sbjct: 395 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 454

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             ++M   G+KP  +T+ +L+ AY+K+G     +    ++  S V  D   +  ++  + 
Sbjct: 455 VLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA 514

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ++ +  K+  L+  M +    PD+  +  ++ A
Sbjct: 515 RSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 547



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 147/296 (49%), Gaps = 4/296 (1%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIE 205
           +V V+ A++  Y +SG  D+A   ++ M+   D +PD+ +++ LI +  K       +  
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDAMRD-QDIEPDLVSFNTLINARAKSGCLAAGVAL 278

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++L E+   G+   A+TYNT+I    +    ++  + F  M+ S  C PD++T N+M+S 
Sbjct: 279 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVSV 337

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +G  G  ++ E  + E    G + D  T N L  ++ + G  +++  V + + K  F   
Sbjct: 338 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
            +TYN +I  +GK G ++     + +M+  G  P+++TY  LV +  K   I +   +L 
Sbjct: 398 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 457

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++ ++ +      F+ +I AY ++G  +     F  M E    PD + +  M+  +
Sbjct: 458 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 513



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK- 193
           LL EV  + GL+P    Y  L+SA  Q   LD+A +   +M + S+C+PD++TY+ ++  
Sbjct: 280 LLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIA-SECRPDLWTYNAMVSV 337

Query: 194 --SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
              C K    +L+ K L E    G +  AVTYN+++  + K    E +E     +V++G 
Sbjct: 338 HGRCGKAQEAELMFKELVEK---GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG- 393

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+     +  
Sbjct: 394 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 453

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V++ M      PT+VT++ +I  + K+G  +  E  F +M   G+KP+ + Y  ++  +
Sbjct: 454 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 513

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-------GDVEKMGELF----- 419
           +++    K+  + R +       D   +  +++A  +        G ++ M  +F     
Sbjct: 514 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPL 573

Query: 420 ---------------LTMKERHCV----PDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
                           ++ +R C+    PD  +  +++ AY  +G  E   +L   +   
Sbjct: 574 VISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQH 633

Query: 461 KENSGKKLIQC 471
             NS   + +C
Sbjct: 634 VPNSHNLISEC 644



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 161/352 (45%), Gaps = 4/352 (1%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            K K WQ A      L+Q+     R   +  L+    +    E A  +F++M+  G  P+V
Sbjct: 760  KLKLWQQAENFVKGLKQESGVDRR--IWNALIHAYAESGLYEHARAIFDIMIKKGPLPTV 817

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +    ++ A    G LDE +  + +++ + D K    T  +++++  K      + KI  
Sbjct: 818  ESVNGMMRALIVDGRLDELYVVVQELQDL-DIKISKSTVLLMLEAFAKAGDVFEVMKIYN 876

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
             M   G   +   Y  +I      K+F ++E   + M E  G  PD+  LN+++  Y  +
Sbjct: 877  GMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM-EGAGFKPDLVVLNTLLLMYTGT 935

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
            GN ++  + Y+     G++ D  T N L   Y R    ++  +++  M KR   P + +Y
Sbjct: 936  GNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESY 995

Query: 330  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             I++   GKA   E+ +  F++M+ +G + N   Y  ++  Y  A    K + +L  ++ 
Sbjct: 996  KILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKE 1055

Query: 390  SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +       + ++++YG +G  ++  ++  ++K  +     + ++T++ AY
Sbjct: 1056 DGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAY 1107



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 2/307 (0%)

Query: 151  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            ++ AL+ AY +SGL + A   I D+       P V + + ++++     R D +  ++ E
Sbjct: 784  IWNALIHAYAESGLYEHA-RAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE 842

Query: 211  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
            +  L I+ S  T   +++ + KA    E+   ++ M ++ G  P++     MIS   ++ 
Sbjct: 843  LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNK 901

Query: 271  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
                +E    E    G K D+  LN L   Y   G +D+   V   + +    P   TYN
Sbjct: 902  RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 961

Query: 331  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
             +I  + +    E+      +M  RG+ P   +Y  L++A  KA L  + D +  ++   
Sbjct: 962  TLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTK 1021

Query: 391  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               L+   ++ ++  Y  A +  K   L   MKE    P   T   ++ +Y   G  + A
Sbjct: 1022 GYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEA 1081

Query: 451  QNLENKM 457
            + + N +
Sbjct: 1082 EKVLNSL 1088



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 47/344 (13%)

Query: 121 MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +VML    +  +  +  +L+  M+ DG KP   +Y  L++A  +    DE    I DM++
Sbjct: 507 LVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEA 566

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           V +  P V + SILIK+        L+++   +    G E    +  +I+D Y K  K E
Sbjct: 567 VFEMNPLVIS-SILIKAECISQGASLLKRACLQ----GYEPDGKSLLSILDAYEKMGKHE 621

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +                 +  L  +     NS N+       +E ++M +  + + ++ +
Sbjct: 622 K----------------GLSLLEWIRQHVPNSHNL------ISECSIMLLCKNGKIVDAI 659

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            + Y R  M  +      F Q    +  ++TY    E F +A  +      F  M+  G+
Sbjct: 660 -QEYSRKQMLKR----GSFGQDCDLYEYLITYLEEAELFPEACQV------FCDMQFLGI 708

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC---IISAYGQAGDVEK 414
            P+   + S +    + G       ++     SD+ L+    +C   +I AYG+    ++
Sbjct: 709 VPSQKVFPSFIFQCCRLGFPETAYQLMDDAARSDISLN--ILSCRVAMIEAYGKLKLWQQ 766

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                  +K+   V D   +  +I AY   G+ E A+ + + MI
Sbjct: 767 AENFVKGLKQESGV-DRRIWNALIHAYAESGLYEHARAIFDIMI 809


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 170/377 (45%), Gaps = 38/377 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T + L+  L K    E+A  + +  L +GL P    +  +V+ Y Q G +++A++TI  M
Sbjct: 359 TCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKM 418

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++V   +P+  TY+ L+K   +    +  EK + +M   G+  +  TYNT+IDGYG++  
Sbjct: 419 EAVG-LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCL 477

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+        M E  G  P++ +   +I+      NI + E    +    GV  + Q  N
Sbjct: 478 FDRCFQILEEM-EKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYN 536

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----------------- 338
           +L      AG         D M  R   PT+VTYNI+I    K                 
Sbjct: 537 MLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRK 596

Query: 339 ------------------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                             AG+++K  E ++ MK  G+KP   TY  L++   K GL++ V
Sbjct: 597 GLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVL-V 655

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + I +++   +++ D   +N +I  Y + GDV+K   L   M+ +   PD +T+  +I  
Sbjct: 656 EKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILG 715

Query: 441 YNALGMTEAAQNLENKM 457
           +   G     +NL N M
Sbjct: 716 HFKEGRMHKVKNLVNDM 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 164/367 (44%), Gaps = 37/367 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L + +  E+A  + E M   G  P    YT L   + + G +D +  T+++ 
Sbjct: 289 TFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASI-TLSEE 347

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 +   YT SIL+ +  K    +  E++L +    G+    V +NTI++GY +   
Sbjct: 348 AVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGD 407

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +  ++   M E+ G  P+  T NS++  +    N+E+ EK   +    GV  +++T N
Sbjct: 408 INKAYTTIEKM-EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYN 466

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   YGR+ ++D+   +++ M+K+   P V++Y  +I    K  +I + E     M HR
Sbjct: 467 TLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHR 526

Query: 356 GMKPNS-----------------------------------ITYCSLVSAYSKAGLIMKV 380
           G+ PN+                                   +TY  L++   K G +M+ 
Sbjct: 527 GVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEA 586

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +++  ++    +  D   +N +IS Y  AG+V+K  EL+ TMK+    P   T+  +I  
Sbjct: 587 ENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG 646

Query: 441 YNALGMT 447
               G+ 
Sbjct: 647 CGKEGLV 653



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 147/332 (44%), Gaps = 36/332 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    + K  E+A    + M+  G+ P+V+ Y  L+  YG+S L D  F  + +M
Sbjct: 429 TYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEM 488

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     KP+V +Y  LI    K       E IL +M + G+  +A  YN +IDG   A K
Sbjct: 489 EK-KGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGK 547

Query: 236 FEEMESSFSAMVE--------------SGGCHP--------------------DIFTLNS 261
            ++    F  MV               +G C                      D+ T NS
Sbjct: 548 LKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNS 607

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS Y ++GN++K  + Y      G+K  + T + L    G+ G+    +   + +Q   
Sbjct: 608 LISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNL 667

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  V YN +I  + + G ++K       M+ +G++P+ +TY  L+  + K G + KV 
Sbjct: 668 V-PDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVK 726

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           +++  ++   +I  T  ++ +I  + +  D +
Sbjct: 727 NLVNDMKIRGLIPKTETYDILIVGHCKLKDFD 758



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 152/339 (44%), Gaps = 2/339 (0%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+ +  + K   +++ L+ +M  DG+ PSV      + +   +   ++     +++   S
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVE-S 176

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             +PD + Y   I++  K        +++  M   G+      YN +I G  K K+ ++ 
Sbjct: 177 GLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDA 236

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E  F  M++     P+  T N++I  Y   G +E+         +  V+  I T N L  
Sbjct: 237 EKLFDEMLDRR-VAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLN 295

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              RA M ++ + V++ M+   F P   TY  + +   K G+++      ++   +G++ 
Sbjct: 296 GLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQI 355

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
              T   L++A  K G + K + +L++   + +     FFN I++ Y Q GD+ K     
Sbjct: 356 LDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTI 415

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M+     P+++T+ ++++ +  +   E A+    KM+
Sbjct: 416 EKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMV 454



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +++ ML   L P   +Y AL+  Y + G + +A S  + M++    +PD  TY+ LI   
Sbjct: 658 IYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEA-QGIQPDKMTYNCLILGH 716

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R   ++ ++ +M   G+     TY+ +I G+ K K F+     +  M E+G   P 
Sbjct: 717 FKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGF-TPS 775

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +   +++I+     G     +   +E N+ G
Sbjct: 776 VSICDNLITGLREEGRSHDADVICSEMNMKG 806


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 138/279 (49%), Gaps = 7/279 (2%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           KP+V +Y+ +I   +     +   +IL  M   GIE  + TY ++I G  K  + EE   
Sbjct: 205 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 264

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  MVE G   P+  T N++I  Y N G++E+   + +E    G+   + T N+L  + 
Sbjct: 265 LFDKMVEIG-LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 323

Query: 302 ---GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              GR G  D M   +  M+K+   P  +TYNI+I  + + G+ ++  +   +M  +G++
Sbjct: 324 FMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIE 380

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P  +TY SL+   S+   + + D +  ++ +  V  D   FN +I  +   G+VE+   L
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFML 440

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              M  +   PD +TF T++Q     G  E A+ L ++M
Sbjct: 441 LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 158/332 (47%), Gaps = 6/332 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G KP+V  Y  ++  Y   G ++ A   ++ M+ V   +PD YTY  LI    K  R + 
Sbjct: 203 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR-VKGIEPDSYTYGSLISGMCKEGRLEE 261

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +  +M  +G+  +AVTYNT+IDGY      E   S    MV+ G   P + T N ++
Sbjct: 262 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG-IMPSVSTYNLLV 320

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A    G + + +    E    G+  D  T NIL   Y R G   +   + + M  +   
Sbjct: 321 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIE 380

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT VTY  +I    +   +++ ++ F+K+  +G+ P+ I + +++  +   G + +   +
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFML 440

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L++++   V  D   FN ++    + G VE+   L   MK R   PD+I++ T+I  Y  
Sbjct: 441 LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGR 500

Query: 444 LGMTEAAQNLENKMIAMKEN----SGKKLIQC 471
            G  + A  + ++M+++  N    +   LI+C
Sbjct: 501 RGDIKDAFXVRDEMLSIGFNPTLLTYNALIKC 532



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 136/328 (41%), Gaps = 74/328 (22%)

Query: 115 QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            ++T   ++ G CK+   E+AS LF+ M+  GL P+   Y  L+  Y   G L+ AFS  
Sbjct: 242 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 301

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-- 230
           ++M       P V TY++L+ +     R    + ++ EM   GI   A+TYN +I+GY  
Sbjct: 302 DEMVK-KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 360

Query: 231 -GKAKK--------------------------------FEEMESSFSAMVESGGCHPDIF 257
            G AK+                                 +E +  F  +++ G   PD+ 
Sbjct: 361 CGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG-VSPDVI 419

Query: 258 TLNSMISAYGNSGNIEK-------MEK----------------------------WYNEF 282
             N+MI  +  +GN+E+       M++                              +E 
Sbjct: 420 MFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G+K D  + N L   YGR G       V D M    F PT++TYN +I+   K    
Sbjct: 480 KXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEG 539

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           +  EE  K+M ++G+ P+  TY SL+  
Sbjct: 540 DLAEELLKEMVNKGISPDDSTYLSLIEG 567



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 4/228 (1%)

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK KK  E    F   +E  G  P++ + N++I  Y + GNIE   +  +   + G++ D
Sbjct: 187 GKLKKARE----FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 242

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   L     + G  ++   + D M +    P  VTYN +I+ +   G +E+   Y  
Sbjct: 243 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 302

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  +G+ P+  TY  LV A    G + + D +++++    +I D   +N +I+ Y + G
Sbjct: 303 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 362

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + ++  +L   M  +   P ++T+ ++I   +     + A +L  K++
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 410



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 91/190 (47%)

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G ++K  ++      +G K ++ + N +   Y   G  +  R ++D M+ +   P   TY
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             +I    K G +E+    F KM   G+ PN++TY +L+  Y   G + +  S   ++  
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             ++     +N ++ A    G + +  ++   M+++  +PD IT+  +I  Y+  G  + 
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 450 AQNLENKMIA 459
           A +L N+M++
Sbjct: 367 AFDLHNEMLS 376



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           + F LL++           T   +M G+C++   E+A +L + M   G+KP    Y  L+
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLI 495

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S YG+ G + +AF   ++M S+    P + TY+ LIK   K    DL E++L EM   GI
Sbjct: 496 SGYGRRGDIKDAFXVRDEMLSIG-FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 554

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESS 242
                TY ++I+G G      E  +S
Sbjct: 555 SPDDSTYLSLIEGMGNVDTLVEDNAS 580



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 37/188 (19%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST---- 171
           T+T L+ +L +  + ++A  LFE +L  G+ P V ++ A++  +  +G ++ AF      
Sbjct: 385 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM 444

Query: 172 -------------------------------INDMKSVSDCKPDVYTYSILIKSCTKFHR 200
                                          +++MK     KPD  +Y+ LI    +   
Sbjct: 445 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKX-RGIKPDHISYNTLISGYGRRGD 503

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                 +  EM  +G   + +TYN +I    K ++ +  E     MV   G  PD  T  
Sbjct: 504 IKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK-GISPDDSTYL 562

Query: 261 SMISAYGN 268
           S+I   GN
Sbjct: 563 SLIEGMGN 570


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI    V YN++I+ +GKAK F E  S  S M E+G            
Sbjct: 62  KAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG     ++ +K +     +G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M +RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 163/371 (43%), Gaps = 39/371 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             +   PD  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 E-AGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F +M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWSM-RKVGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  M  R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 282 SSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   + ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLNAYG 401

Query: 443 ALGMTEAAQNL 453
            L   + A ++
Sbjct: 402 KLHEFDXANDM 412



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS + +  G  PD+   NSMI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRL-KRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++R   P   TY+ +I  FGK G  +    + +KM+   +  + + Y +L+    K    
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K  SI  +++ + +  D   +N +I+ +G+A    +   L   M+E   VPD ++++T+
Sbjct: 61  SKAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 438 IQAY 441
           +  Y
Sbjct: 121 LTMY 124


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 155/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 163/362 (45%), Gaps = 39/362 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 107 T-AGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---T 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM  K  +Q   T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-------------------- 393
             G++ + + Y +++ AY +AGL+     +L ++++ D I                    
Sbjct: 282 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATY 341

Query: 394 -----------LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
                       D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 AL 444
            L
Sbjct: 402 KL 403



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 157/369 (42%), Gaps = 46/369 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIVQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H    P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 353

Query: 395 DTPFFN-----------------------------------CIISAYGQAGDVEKMGELF 419
           D   F                                     +++AYG+  + +K   ++
Sbjct: 354 DITVFERMIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVY 413

Query: 420 LTMKERHCV 428
           + M+E  CV
Sbjct: 414 MEMQEVGCV 422



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 173/363 (47%), Gaps = 8/363 (2%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
           VL  L    + KKW L  +I   LR Q W+      F  L+   GK      A  +  V+
Sbjct: 106 VLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEMDFLMLITAYGKLGNFNGAERVLSVL 165

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G  P+V  YTAL+ +YG+ G  + A +    M+S S  +P   TY I++K+  +  +
Sbjct: 166 SKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQS-SGPEPSAVTYQIILKTFVEGDK 224

Query: 201 FDLIEKI---LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
           F   E++   L +     ++     Y+ +I  Y KA  +++    FS+MV  G     + 
Sbjct: 225 FKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTV- 283

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T NS++S   N   + K+   Y++    G++ D+ +  +L K+YGRA   ++  SV + M
Sbjct: 284 TYNSLMSFETNYKEVSKI---YDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEM 340

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
                 PT   YNI+++ F  +G +E+ +  FK M+   + P+  +Y +++SAY  A  +
Sbjct: 341 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDM 400

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
              +   ++++      +   +  +I  Y +A DVEKM E++  M+      +     T+
Sbjct: 401 EGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTI 460

Query: 438 IQA 440
           + A
Sbjct: 461 MDA 463



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+AYG  GN    E+  +  + MG   ++ +   L +SYGR G  +   ++   MQ   
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ VTY I+++TF +    ++ EE F+ +   K   +KP+   Y  ++  Y KAG   
Sbjct: 205 PEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYD 264

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           K   +   +    V   T  +N ++S      +V K   ++  M+     PD +++A +I
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETNYKEVSK---IYDQMQRSGIQPDVVSYALLI 321

Query: 439 QAYNALGMTEAAQNLENKMI 458
           +AY      E A ++  +M+
Sbjct: 322 KAYGRARREEEALSVFEEML 341


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLI 204
           P+V V+ A++  Y +SG  D+A   ++ M+   D +PD+ +++ LI +  K       + 
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRD-QDIEPDLVSFNTLINARAKSGCLAAGVA 117

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L E+   G+   A+TYNT+I    +    ++  + F  M+ S  C PD++T N+M+S
Sbjct: 118 LELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVS 176

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +G  G  ++ E  + E    G + D  T N L  ++ + G  +++  V + + K  F  
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             +TYN +I  +GK G ++     + +M+  G  P+++TY  LV +  K   I +   +L
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++ ++ +      F+ +I AY ++G  +     F  M E    PD + +  M+  +
Sbjct: 297 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 353



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 159/330 (48%), Gaps = 8/330 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFSTI 172
           Q F  +M +  +  + + A  L + M    ++P +  +  L++A  +SG L    A   +
Sbjct: 62  QVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELL 121

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGY 230
           ++++     +PD  TY+ LI +C++    D    +  EM  +  EC     TYN ++  +
Sbjct: 122 HEVRQAG-LRPDAITYNTLISACSQGSNLDDAVAVFEEM--IASECRPDLWTYNAMVSVH 178

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           G+  K +E E  F  +VE G   PD  T NS++ A+   G++E++E+   E    G + D
Sbjct: 179 GRCGKAQEAELMFKELVEKG-FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 237

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T N +   YG+ G  D    + D M+     P  VTY +++++ GK   I +  +  +
Sbjct: 238 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 297

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M   G+KP  +T+ +L+ AY+K+G     +    ++  S V  D   +  ++  + ++ 
Sbjct: 298 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 357

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +  K+  L+  M +    PD+  +  ++ A
Sbjct: 358 ETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 387



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK- 193
           LL EV  + GL+P    Y  L+SA  Q   LD+A +   +M + S+C+PD++TY+ ++  
Sbjct: 120 LLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIA-SECRPDLWTYNAMVSV 177

Query: 194 --SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
              C K    +L+ K L E    G +  AVTYN+++  + K    E +E     +V++G 
Sbjct: 178 HGRCGKAQEAELMFKELVEK---GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG- 233

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+     +  
Sbjct: 234 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 293

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V++ M      PT+VT++ +I  + K+G  +  E  F +M   G+KP+ + Y  ++  +
Sbjct: 294 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 353

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-------GDVEKMGELF----- 419
           +++    K+  + R +       D   +  +++A  +        G ++ M  +F     
Sbjct: 354 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPL 413

Query: 420 ---------------LTMKERHCV----PDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
                           ++ +R C+    PD  +  +++ AY  +G  E   +L   +   
Sbjct: 414 VISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQH 473

Query: 461 KENSGKKLIQC 471
             NS   + +C
Sbjct: 474 VPNSHNLISEC 484



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 161/352 (45%), Gaps = 4/352 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K WQ A      L+Q+     R   +  L+    +    E A  +F++M+  G  P+V
Sbjct: 600 KLKLWQQAENFVKGLKQESGVDRR--IWNALIHAYAESGLYEHARAIFDIMIKKGPLPTV 657

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           +    ++ A    G LDE +  + +++ + D K    T  +++++  K      + KI  
Sbjct: 658 ESVNGMMRALIVDGRLDELYVVVQELQDL-DIKISKSTVLLMLEAFAKAGDVFEVMKIYN 716

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G   +   Y  +I      K+F ++E   + M E  G  PD+  LN+++  Y  +
Sbjct: 717 GMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM-EGAGFKPDLVVLNTLLLMYTGT 775

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN ++  + Y+     G++ D  T N L   Y R    ++  +++  M KR   P + +Y
Sbjct: 776 GNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESY 835

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            I++   GKA   E+ +  F++M+ +G + N   Y  ++  Y  A    K + +L  ++ 
Sbjct: 836 KILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKE 895

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +       + ++++YG +G  ++  ++  ++K  +     + ++T++ AY
Sbjct: 896 DGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAY 947



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 2/307 (0%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           ++ AL+ AY +SGL + A   I D+       P V + + ++++     R D +  ++ E
Sbjct: 624 IWNALIHAYAESGLYEHA-RAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE 682

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +  L I+ S  T   +++ + KA    E+   ++ M ++ G  P++     MIS   ++ 
Sbjct: 683 LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNK 741

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
               +E    E    G K D+  LN L   Y   G +D+   V   + +    P   TYN
Sbjct: 742 RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 801

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I  + +    E+      +M  RG+ P   +Y  L++A  KA L  + D +  ++   
Sbjct: 802 TLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTK 861

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              L+   ++ ++  Y  A +  K   L   MKE    P   T   ++ +Y   G  + A
Sbjct: 862 GYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEA 921

Query: 451 QNLENKM 457
           + + N +
Sbjct: 922 EKVLNSL 928



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 137/326 (42%), Gaps = 12/326 (3%)

Query: 121 MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +VML    +  +  +  +L+  M+ DG KP   +Y  L++A  +    DE    I DM++
Sbjct: 347 LVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEA 406

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           V +  P V + SILIK+        L+++   +    G E    +  +I+D Y K  K E
Sbjct: 407 VFEMNPLVIS-SILIKAECISQGASLLKRACLQ----GYEPDGKSLLSILDAYEKMGKHE 461

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLN 295
           +  S    + +      ++ +  S++    N   ++ ++++  +  L       D     
Sbjct: 462 KGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYE 521

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L      A ++ +   V   MQ     P+   Y  +I T  + G  E   +        
Sbjct: 522 YLITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARS 581

Query: 356 GMKPNSIT-YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            +  N ++   +++ AY K  L  + ++ ++ ++    + D   +N +I AY ++G  E 
Sbjct: 582 DISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGV-DRRIWNALIHAYAESGLYEH 640

Query: 415 MGELFLTMKERHCVPDNITFATMIQA 440
              +F  M ++  +P   +   M++A
Sbjct: 641 ARAIFDIMIKKGPLPTVESVNGMMRA 666


>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 165/343 (48%), Gaps = 6/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   GK  Q ++AS  FE ML +G+ P+   +  ++   G  G L E    +  M
Sbjct: 319 TYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKM 378

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +  C PD  TY+ILI    K    DL     AEM   G++   V+Y T++  Y     
Sbjct: 379 EELQ-CPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHM 437

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTL 294
             E E   + M E G    D FT +++   Y ++G +E+   W+  F+L G + ++  + 
Sbjct: 438 VAEAEKLITEMDERG-LEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSA 496

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NI   +YG  G   +   V    Q+     TV+ +N++I+ +G      K ++ F  MK 
Sbjct: 497 NI--DAYGERGFILEAERVFVSCQEEKKC-TVLEFNVMIKAYGVVKDYAKAQKIFDSMKS 553

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  +Y SL+   + A +     + L++++++ ++ D   ++ +IS++ + G +E 
Sbjct: 554 NGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEM 613

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +L+  M +    PD I +  +I A+   G  + A N  N M
Sbjct: 614 ADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 656



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 169/429 (39%), Gaps = 66/429 (15%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q  W+ AL+IF        Y+     +  ++  LGK ++      L+  M   G+KP  
Sbjct: 163 EQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPIN 222

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE---- 205
             Y  L+  Y + G  +EA   +  M      +PD  T  I+++   K   F   E    
Sbjct: 223 STYGTLIDVYSKGGFKEEALVWLERMNE-QGMEPDEVTMGIVVQLYKKAGEFQKAESFFK 281

Query: 206 ---------------------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
                                K+ + +    +  S  TYNT+ID YGKA + +E  ++F 
Sbjct: 282 KWSSCNSMKYEITNKKKAASVKVESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFE 341

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M++  G  P   T N+MI   GN G ++++     +   +    D +T NIL   Y + 
Sbjct: 342 NMLKE-GVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKH 400

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT- 363
              D   +    M++    P +V+Y  ++  +     + + E+   +M  RG++ +  T 
Sbjct: 401 DNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQ 460

Query: 364 ---------------------------------YCSLVSAYSKAGLIMKVDSILR--QVE 388
                                            Y + + AY + G I++ + +    Q E
Sbjct: 461 SALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSANIDAYGERGFILEAERVFVSCQEE 520

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
               +L+   FN +I AYG   D  K  ++F +MK    VPD  +++++IQ      M  
Sbjct: 521 KKCTVLE---FNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPA 577

Query: 449 AAQNLENKM 457
            A     KM
Sbjct: 578 MALAYLKKM 586



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 133/292 (45%), Gaps = 3/292 (1%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K +V  +  ++ AYG      +A    + MKS +   PD  +YS LI+  T      +  
Sbjct: 522 KCTVLEFNVMIKAYGVVKDYAKAQKIFDSMKS-NGVVPDKCSYSSLIQILTGADMPAMAL 580

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
             L +M   G+    + Y+ +I  + K    E  +  +  MV+ G   PDI     +I+A
Sbjct: 581 AYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHG-VQPDIIVYGVLINA 639

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           + ++G++++   + N     G+  +    N L K Y + G   +       +++    P 
Sbjct: 640 FADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPA 699

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           + + N +I+ + +   +++ EE F+ +K +G + N  T+  ++  Y K G I +   + R
Sbjct: 700 IYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVAR 758

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
           Q++   ++ D   FN +IS Y   G  ++   +F  M +    PD  T+ ++
Sbjct: 759 QMKEQGLLSDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSL 810



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 45/306 (14%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           S + Y+A + AYG+ G + EA       +    C   V  ++++IK+      +   +KI
Sbjct: 490 SSECYSANIDAYGERGFILEAERVFVSCQEEKKCT--VLEFNVMIKAYGVVKDYAKAQKI 547

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
              M   G+     +Y+++I     A     M  ++   ++S G   D    + +IS++ 
Sbjct: 548 FDSMKSNGVVPDKCSYSSLIQILTGAD-MPAMALAYLKKMQSAGLVSDCIPYSVVISSFS 606

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G++E  +K Y E    GV+ DI                                   +
Sbjct: 607 KLGHLEMADKLYREMVKHGVQPDI-----------------------------------I 631

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y ++I  F  AG +++   Y   MK  G+  N++ Y SL+  Y+K G + +     + +
Sbjct: 632 VYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKML 691

Query: 388 ENSDVILDTPFF---NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           E +D   D P     NC+I  Y +   V++  E+F ++K++    +  TFA M+  Y  +
Sbjct: 692 EQTD---DGPAIYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKI 747

Query: 445 GMTEAA 450
           G  + A
Sbjct: 748 GRIQEA 753



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 123/285 (43%), Gaps = 4/285 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K +  A KIF  ++       +C +++ L+ +L     P  A    + M S GL      
Sbjct: 539 KDYAKAQKIFDSMKSNGVVPDKC-SYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIP 597

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ ++S++ + G L+ A     +M      +PD+  Y +LI +             +  M
Sbjct: 598 YSVVISSFSKLGHLEMADKLYREMVK-HGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 656

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+  + V YN++I  Y K    +E   ++  M+E     P I++ N MI  Y     
Sbjct: 657 KRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYK-MLEQTDDGPAIYSSNCMIDLYSERSM 715

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++ E+ +      G +A+  T  ++   Y + G   +   V   M+++     ++++N 
Sbjct: 716 VKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLLSFNN 774

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           +I  +   G  ++    F++M    ++P+  TY SL     K G+
Sbjct: 775 MISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGV 819


>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Cucumis sativus]
          Length = 858

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 165/343 (48%), Gaps = 6/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   GK  Q ++AS  FE ML +G+ P+   +  ++   G  G L E    +  M
Sbjct: 318 TYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKM 377

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +  C PD  TY+ILI    K    DL     AEM   G++   V+Y T++  Y     
Sbjct: 378 EELQ-CPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHM 436

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTL 294
             E E   + M E G    D FT +++   Y ++G +E+   W+  F+L G + ++  + 
Sbjct: 437 VAEAEKLITEMDERG-LEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSA 495

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NI   +YG  G   +   V    Q+     TV+ +N++I+ +G      K ++ F  MK 
Sbjct: 496 NI--DAYGERGFILEAERVFVSCQEEKKC-TVLEFNVMIKAYGVVKDYAKAQKIFDSMKS 552

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  +Y SL+   + A +     + L++++++ ++ D   ++ +IS++ + G +E 
Sbjct: 553 NGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEM 612

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +L+  M +    PD I +  +I A+   G  + A N  N M
Sbjct: 613 ADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 655



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 169/429 (39%), Gaps = 66/429 (15%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q  W+ AL+IF        Y+     +  ++  LGK ++      L+  M   G+KP  
Sbjct: 162 EQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPIN 221

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE---- 205
             Y  L+  Y + G  +EA   +  M      +PD  T  I+++   K   F   E    
Sbjct: 222 STYGTLIDVYSKGGFKEEALVWLERMNE-QGMEPDEVTMGIVVQLYKKAGEFQKAESFFK 280

Query: 206 ---------------------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
                                K+ + +    +  S  TYNT+ID YGKA + +E  ++F 
Sbjct: 281 KWSSCNSMKYEITNKKKAASVKVESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFE 340

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M++  G  P   T N+MI   GN G ++++     +   +    D +T NIL   Y + 
Sbjct: 341 NMLKE-GVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKH 399

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT- 363
              D   +    M++    P +V+Y  ++  +     + + E+   +M  RG++ +  T 
Sbjct: 400 DNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQ 459

Query: 364 ---------------------------------YCSLVSAYSKAGLIMKVDSILR--QVE 388
                                            Y + + AY + G I++ + +    Q E
Sbjct: 460 SALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSANIDAYGERGFILEAERVFVSCQEE 519

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
               +L+   FN +I AYG   D  K  ++F +MK    VPD  +++++IQ      M  
Sbjct: 520 KKCTVLE---FNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPA 576

Query: 449 AAQNLENKM 457
            A     KM
Sbjct: 577 MALAYLKKM 585



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 133/292 (45%), Gaps = 3/292 (1%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K +V  +  ++ AYG      +A    + MKS +   PD  +YS LI+  T      +  
Sbjct: 521 KCTVLEFNVMIKAYGVVKDYAKAQKIFDSMKS-NGVVPDKCSYSSLIQILTGADMPAMAL 579

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
             L +M   G+    + Y+ +I  + K    E  +  +  MV+ G   PDI     +I+A
Sbjct: 580 AYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHG-VQPDIIVYGVLINA 638

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           + ++G++++   + N     G+  +    N L K Y + G   +       +++    P 
Sbjct: 639 FADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPA 698

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           + + N +I+ + +   +++ EE F+ +K +G + N  T+  ++  Y K G I +   + R
Sbjct: 699 IYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVAR 757

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
           Q++   ++ D   FN +IS Y   G  ++   +F  M +    PD  T+ ++
Sbjct: 758 QMKEQGLLSDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSL 809



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 45/306 (14%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           S + Y+A + AYG+ G + EA       +    C   V  ++++IK+      +   +KI
Sbjct: 489 SSECYSANIDAYGERGFILEAERVFVSCQEEKKCT--VLEFNVMIKAYGVVKDYAKAQKI 546

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
              M   G+     +Y+++I     A     M  ++   ++S G   D    + +IS++ 
Sbjct: 547 FDSMKSNGVVPDKCSYSSLIQILTGAD-MPAMALAYLKKMQSAGLVSDCIPYSVVISSFS 605

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G++E  +K Y E    GV+ DI                                   +
Sbjct: 606 KLGHLEMADKLYREMVKHGVQPDI-----------------------------------I 630

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y ++I  F  AG +++   Y   MK  G+  N++ Y SL+  Y+K G + +     + +
Sbjct: 631 VYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKML 690

Query: 388 ENSDVILDTPFF---NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           E +D   D P     NC+I  Y +   V++  E+F ++K++    +  TFA M+  Y  +
Sbjct: 691 EQTD---DGPAIYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKI 746

Query: 445 GMTEAA 450
           G  + A
Sbjct: 747 GRIQEA 752



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 123/285 (43%), Gaps = 4/285 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K +  A KIF  ++       +C +++ L+ +L     P  A    + M S GL      
Sbjct: 538 KDYAKAQKIFDSMKSNGVVPDKC-SYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIP 596

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ ++S++ + G L+ A     +M      +PD+  Y +LI +             +  M
Sbjct: 597 YSVVISSFSKLGHLEMADKLYREMVK-HGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 655

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+  + V YN++I  Y K    +E   ++  M+E     P I++ N MI  Y     
Sbjct: 656 KRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYK-MLEQTDDGPAIYSSNCMIDLYSERSM 714

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++ E+ +      G +A+  T  ++   Y + G   +   V   M+++     ++++N 
Sbjct: 715 VKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLLSFNN 773

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           +I  +   G  ++    F++M    ++P+  TY SL     K G+
Sbjct: 774 MISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGV 818


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 1/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    +QA+ + E M + G +P +  Y  L     Q+G +DEAF   ++M
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEM 339

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +S   PDV TY+ L+ +C K+       ++L EM   G++ + VT+N ++    K  K
Sbjct: 340 ERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGK 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE       + E G   PD+ T N++I AY  +GN+ K     +E    G+K D  TLN
Sbjct: 400 LEEALGKLEKIAEEG-LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  +   Y+    ++    +R F P  V+Y  V+  + K  + E     + +M  R
Sbjct: 459 TVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER 518

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+  TY +L+    +   + +    L ++    ++ D   +N II AY + GD+E  
Sbjct: 519 KLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENA 578

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                 M E    PD +T  T++      G  + A  L
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKL 616



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 154/335 (45%), Gaps = 39/335 (11%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVD 150
           KW+ +     LL + +    +    T  +V+   CK+   E+A    E +  +GL P V 
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA- 209
            Y  L+ AY ++G + +AF+ +++M      K D +T + ++ +  K  R++  E++L  
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVG-KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHS 479

Query: 210 ---------EMSYLGIEC-------------------------SAVTYNTIIDGYGKAKK 235
                    E+SY  +                           S  TYNT+I G  + ++
Sbjct: 480 PPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMER 539

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     + +VE G   PD  T N +I AY   G++E   +++N+      K D+ T N
Sbjct: 540 LKEAIDKLNELVEKGLV-PDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCN 598

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L       G  DK   + +   ++     V+TYN +I++  K G ++    +F  M+ +
Sbjct: 599 TLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVK 658

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           G++P++ TY  ++SA S+AG   +  ++L ++ +S
Sbjct: 659 GLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 1/297 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P    Y  L++A+ + G+L EA + +  MK      P   TY+ L+ +  +      
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKR-DGIAPTQPTYNTLVSAFARLGWIKQ 296

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             K++  M+  G E    TYN +  G  +A K +E       M       PD+ T N+++
Sbjct: 297 ATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLV 356

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A           +   E    GVK  + T NI+ KS  + G  ++    ++ + +    
Sbjct: 357 DACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V+TYN +I+ + KAG++ K      +M  +G+K ++ T  +++    K       + +
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           L        + D   +  +++AY +  + E    L+  M ER  +P   T+ T+I+ 
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 4/260 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F L+ +      +  TFT   V+   CK  + E A  L       G  P    Y  ++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVM 496

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +AY +    + A    + M       P + TY+ LIK   +  R       L E+   G+
Sbjct: 497 AAYFKEYNPEPALRLWDQMIE-RKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGL 555

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN II  Y K    E      + MVE+    PD+ T N++++     G ++K  
Sbjct: 556 VPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS-FKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K +  +   G K D+ T N L +S  + G  D      D M+ +   P   TYN+V+   
Sbjct: 615 KLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSAL 674

Query: 337 GKAGHIEKMEEYFKKMKHRG 356
            +AG  E+      K+   G
Sbjct: 675 SEAGRSEEAHNMLHKLADSG 694



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 131/318 (41%), Gaps = 8/318 (2%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT----YSILIKSCTKFHRFD 202
           P+  +  A +SAY +  L   A   ++ ++     +P +       S L +S +   +  
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           L   +   +  L +  +  T+N ++  +       +  ++ S M +  G  PD  T N++
Sbjct: 193 L--DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTL 249

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++A+   G + +           G+     T N L  ++ R G   +   V++ M    F
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVD 381
            P + TYN++     +AG +++      +M+      P+ +TY +LV A  K        
Sbjct: 310 EPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDAL 369

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L ++ +  V       N ++ +  + G +E+       + E    PD IT+ T+I AY
Sbjct: 370 RLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429

Query: 442 NALGMTEAAQNLENKMIA 459
              G    A  L ++M+ 
Sbjct: 430 CKAGNVAKAFTLMDEMVG 447



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 38/281 (13%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
            PE A  L++ M+   L PS+  Y  L+    +   L EA   +N++       PD  TY
Sbjct: 504 NPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVE-KGLVPDETTY 562

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +I+I +  K    +   +   +M     +   VT NT+++G     K ++    F + VE
Sbjct: 563 NIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVE 622

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
            G    D+ T N++I +    G+++    ++++  + G++ D  T N++  +   AG  +
Sbjct: 623 KGK-KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 309 KMRSVMDFM------QKRFFFP------------------------------TVVTYNIV 332
           +  +++  +       + F  P                               + TY   
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMER 741

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +      G +++ +    +M  +GM  +S TY +L+    K
Sbjct: 742 LNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIK 782


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 169/383 (44%), Gaps = 34/383 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L KC++ ++A  L E M   G  P+V  Y ++++ + ++  +DEA   +  M
Sbjct: 111 TYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM 170

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +   C PD+ TY+ LI    K        ++L E++  G     VTY+T+IDG  KA +
Sbjct: 171 VA-EGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGR 229

Query: 236 -------FEEMESSFSAMVES---GG---------------------CHPDIFTLNSMIS 264
                  FEEM  + +A+  +   GG                     C PD+ T  +++S
Sbjct: 230 LRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMS 289

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+   G ++   + + +     +  D+ T   L       G  +    +++ + +R   P
Sbjct: 290 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           T+ TYN V++ + KA  + K EE     + RG  PN++TY  LV+   +AG   +    L
Sbjct: 350 TIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 409

Query: 385 RQV--ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            Q+  E          +  I+ A  + G  +   + +  M +R  VP   TFAT++ A  
Sbjct: 410 DQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALC 469

Query: 443 ALGMTEAAQNLENKMIAMKENSG 465
                + A  L  +MI      G
Sbjct: 470 KAHQPQQAHELLEEMIKYGHTPG 492



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 150/313 (47%), Gaps = 5/313 (1%)

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           ++D   P    YT LV    ++  L +A   + +M S     PD  T +++++S     R
Sbjct: 31  MNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARH-VPDNTTLTVVVQSLCLGDR 89

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D   +++ EM + G+  +A+TY+ ++DG  K ++ +E  +    M E  GC P + T N
Sbjct: 90  VDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAER-GCAPTVVTYN 148

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+I+ +  +  +++   +  +    G   DI T   L   + ++    +   ++  + +R
Sbjct: 149 SIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRR 208

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P +VTY+ VI+   KAG +    + F++M      P +ITY SL+  Y +AG + + 
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEA 265

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L ++ +     D   +  ++SA+ + G ++   ELF  M      PD +TF +++  
Sbjct: 266 IRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 325

Query: 441 YNALGMTEAAQNL 453
               G  E A  L
Sbjct: 326 LCGEGRMEDALEL 338



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 139/335 (41%), Gaps = 5/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T T ++  L    + + A  L E ML  G+  +   Y+ALV    +   LDEA + +  M
Sbjct: 76  TLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETM 135

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P V TY+ +I    +  R D     + +M   G     +TY  +I G+ K++ 
Sbjct: 136 AE-RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRD 194

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                     +   G   PDI T +++I     +G +      + E   M       T N
Sbjct: 195 VGRGLELLGEVTRRGF-TPDIVTYSTVIDGLCKAGRLRDAVDIFEE---MSCAPTAITYN 250

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y RAG  D+   ++  M      P VVTY  ++  F K G ++   E F++M   
Sbjct: 251 SLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVAN 310

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+ +T+ SLV      G +     +L ++           +NC++  Y +A  V K 
Sbjct: 311 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKA 370

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            EL    + R  VP+ +T+  ++      G T+ A
Sbjct: 371 EELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 405



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 140/306 (45%), Gaps = 9/306 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K  +   A  +FE M      P+   Y +L+  Y ++G +DEA   +  M
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKM 272

Query: 176 KSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
             V D C PDV TY+ L+ +  K  R D   ++  +M    +    VT+ +++DG     
Sbjct: 273 --VDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG 330

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+       +   G C P I+T N ++  Y  +  + K E+   +F   G   +  T 
Sbjct: 331 RMEDALELLEEITRRG-CPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTY 389

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFF-FPT-VVTYNIVIETFGKAGHIEKMEEYFKKM 352
           NIL     RAG  D+    +D +       PT V  Y I+++   + G  +   +++++M
Sbjct: 390 NILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEM 449

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             RG  P + T+ ++V A  KA    +   +L ++            + ++SAY +AG +
Sbjct: 450 IQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMI 509

Query: 413 EKMGEL 418
           +K  EL
Sbjct: 510 QKADEL 515



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 138/304 (45%), Gaps = 14/304 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  + + A+ IF    ++        T+  L+    +    ++A  L   M+ D 
Sbjct: 221 IDGLCKAGRLRDAVDIF----EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDK 276

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V  YT L+SA+ + G LD+A+     M + +   PDV T++ L+       R +  
Sbjct: 277 CAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVA-NKLSPDVVTFTSLVDGLCGEGRMEDA 335

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKA---KKFEEMESSFSAMVESGGCHPDIFTLNS 261
            ++L E++  G   +  TYN ++DGY KA   +K EE+ + F     S G  P+  T N 
Sbjct: 336 LELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADF----RSRGFVPNTVTYNI 391

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           +++    +G  ++  ++ ++ N  G      +    I+  +  R G  D      + M +
Sbjct: 392 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 451

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R + P   T+  V+    KA   ++  E  ++M   G  P   T  ++VSAY +AG+I K
Sbjct: 452 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQK 511

Query: 380 VDSI 383
            D +
Sbjct: 512 ADEL 515



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWY 279
           +TY  ++ G  KA++  +       MV +   H PD  TL  ++ +      ++   +  
Sbjct: 40  LTYTKLVHGLSKARRLRDAVQVLQEMVSAR--HVPDNTTLTVVVQSLCLGDRVDDARELV 97

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            E    G+ A+  T + L     +    D+  ++++ M +R   PTVVTYN +I  F +A
Sbjct: 98  EEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA 157

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             +++   + ++M   G  P+ ITY +L+  + K+  + +   +L +V       D   +
Sbjct: 158 RRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTY 217

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + +I    +AG +    ++F   +E  C P  IT+ ++I  Y   G  + A  L  KM+
Sbjct: 218 STVIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 2/239 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T LM    K  + + A  LF+ M+++ L P V  +T+LV      G +++A   + ++
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P +YTY+ ++    K ++    E+++A+    G   + VTYN ++ G  +A +
Sbjct: 343 TR-RGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGR 401

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMI-SAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            ++       +   GG  P    + ++I  A    G  +   ++Y E    G      T 
Sbjct: 402 TDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATF 461

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
             +  +  +A    +   +++ M K    P   T + V+  + +AG I+K +E   +++
Sbjct: 462 ATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 4/171 (2%)

Query: 117 FTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T   V+ G CK  Q  +A  L     S G  P+   Y  LV+   ++G  D+A   ++ 
Sbjct: 352 YTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQ 411

Query: 175 MKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           + S    C   V  Y+I++ +  +  R D   +   EM   G   +A T+ T++    KA
Sbjct: 412 LNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKA 471

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            + ++       M++ G   P   T ++++SAY  +G I+K ++  +E  L
Sbjct: 472 HQPQQAHELLEEMIKYGH-TPGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   +  +   A++ +  + Q+ +  A   TF  ++  L K  QP+QA  L E M+  G
Sbjct: 430 LDALCRDGRTDDAVQFYEEMIQRGYVPAA-ATFATVVFALCKAHQPQQAHELLEEMIKYG 488

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
             P      A+VSAY ++G++ +A    ++++  +D
Sbjct: 489 HTPGPGTCDAVVSAYCRAGMIQKADELASELRLYTD 524


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 167/356 (46%), Gaps = 9/356 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           A+++F  +R+++     C     T+T +M     C Q E    +F++M+++G++P++  Y
Sbjct: 312 AIELFNSMRERR---TTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSY 368

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL+ AY   G+  EA  T   +K  +  +PD+ +Y+ L+ +  +  + +   ++  EM 
Sbjct: 369 NALLGAYASHGMHTEALETFKLLKQ-NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMR 427

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
               + + V+YN +ID YG A   +E  S    M E  G  PD+ +++++++A G    +
Sbjct: 428 KNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM-EQDGIQPDVISISTLLTACGRCKQL 486

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K++         G++ +    N    SY   G Y K   +   M+     P  VTYNI+
Sbjct: 487 TKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNIL 546

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I    K G   +  ++F+ M    +      Y S++ +Y K G + +  S    ++ +  
Sbjct: 547 ISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGC 606

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
             D   +  +I AY   G   +  +LF  M+     PD I  +++++A N  G  E
Sbjct: 607 FPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPE 662



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 182/399 (45%), Gaps = 37/399 (9%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ +F  ++ Q+ Y AR   +  ++ +  +  + +QA  LF  M     KP+ D Y +L+
Sbjct: 136 AVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLI 195

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            A+ ++G    A + ++DM+  +   P   TY+ +I +C     +    ++  +M+  G+
Sbjct: 196 HAHARAGQWCWAINIMDDMQRAA-IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGV 254

Query: 217 ECSAVTYNTIIDGYGKAKK-------FEEMESS--------------------------- 242
               +T+N ++  +    +       FE M+SS                           
Sbjct: 255 GPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIE 314

Query: 243 -FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F++M E    CHPD+ T  S++ +Y   G  E  +  ++     GV+ +I + N L  +
Sbjct: 315 LFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGA 374

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y   GM+ +       +++    P +V+Y  ++  +G++   EK  E F +M+    KPN
Sbjct: 375 YASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPN 434

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+ AY  AG++ +  S+L ++E   +  D    + +++A G+   + K+  +  
Sbjct: 435 KVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILA 494

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             K R    + + + + I +Y +LG  + A  L   M A
Sbjct: 495 AAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRA 533



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 178/365 (48%), Gaps = 9/365 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+ F LL+Q    +    ++T L+   G+  QPE+A  +F  M  +  KP+   Y AL+
Sbjct: 384 ALETFKLLKQNG-LRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALI 442

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +G+L EA S +++M+     +PDV + S L+ +C +  +   I+ ILA     GI
Sbjct: 443 DAYGSAGMLKEAISLLHEMEQ-DGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGI 501

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V YN+ I  Y     +++    +++M  +G   PD  T N +IS     G   +  
Sbjct: 502 QLNTVAYNSGIGSYLSLGDYKKALVLYTSM-RAGNVKPDAVTYNILISGSCKLGRYVESL 560

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K++ +   + +    +  + +  SY + G   +  S  + M++   FP V+TY  +I+ +
Sbjct: 561 KFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAY 620

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G   +  + FK+M++ G +P++I   SL+ A +K G   +V  ++  ++   + L+ 
Sbjct: 621 SDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQ 680

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL---GMTEAAQNL 453
             +  IIS+     D +   ++   +        +I+F T+    N L   G TE+   L
Sbjct: 681 KAYFEIISSCTMLRDWKTASQIIEHLDSS---LSSISFGTLNHILNFLGKCGRTESMMKL 737

Query: 454 ENKMI 458
             KM+
Sbjct: 738 FYKMV 742



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  +W  A+ I   +++     +R  T+  ++   G     ++A  L + M  +G+ P +
Sbjct: 200 RAGQWCWAINIMDDMQRAAIPPSR-TTYNNVINACGAAGNWKKALELCKKMTENGVGPDL 258

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  ++SA+       +A +    MKS S   PD  T +I+I    K   +    ++  
Sbjct: 259 ITHNIVLSAFKNGAQYSKAIAYFEIMKS-SKVAPDTCTMNIVIHCLVKIGLYGEAIELFN 317

Query: 210 EMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
            M      C    VTY +I+  Y    + E  ++ F  MV + G  P+I + N+++ AY 
Sbjct: 318 SMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMV-AEGVRPNIVSYNALLGAYA 376

Query: 268 NSG-NIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           + G + E +E     F L+   G++ DI +   L  +YGR+   +K R V + M+K    
Sbjct: 377 SHGMHTEALET----FKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACK 432

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  V+YN +I+ +G AG +++      +M+  G++P+ I+  +L++A  +   + K+D I
Sbjct: 433 PNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDII 492

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L   ++  + L+T  +N  I +Y   GD +K   L+ +M+  +  PD +T+  +I     
Sbjct: 493 LAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCK 552

Query: 444 LG 445
           LG
Sbjct: 553 LG 554


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 175/363 (48%), Gaps = 3/363 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A K+F ++  +   +    ++T ++  L +  + ++   LF+ M  D   P+V  YT ++
Sbjct: 268 AYKVFNMMPNKGCRRNEV-SYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVII 326

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            A   +    E     N+M+  S C+P+V+TY++++ +  K  + D   +IL EM   G+
Sbjct: 327 HALFGNDRNLEGMDLFNEMRERS-CEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGL 385

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S VTYN +I GY +  + E        M ES  C P+  T N +I  +    ++ K  
Sbjct: 386 VPSVVTYNALIRGYCEEGRIEAALEILGLM-ESNNCRPNERTYNELICGFSKRKHVHKAM 444

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
              ++     +   + T N L     +AG +D    ++D +++    P   TY++ I+T 
Sbjct: 445 TLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTL 504

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K+  +E+  + F  +K +G+K N + Y +L+  + KAG I +  S+L ++ + D + ++
Sbjct: 505 CKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNS 564

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I    + G V++   +   M +    P   T+  +I+     G  + A  + N+
Sbjct: 565 STYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQ 624

Query: 457 MIA 459
           M++
Sbjct: 625 MVS 627



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 151/314 (48%), Gaps = 3/314 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ + + AL+I GL+      +   +T+ +L+    K K   +A  L   ML   L PS+
Sbjct: 401 EEGRIEAALEILGLMESNNC-RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSL 459

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +L+    ++G  D A+  ++ +K  +   PD +TYS+ I +  K  R +    +  
Sbjct: 460 VTYNSLIHVQCKAGHFDSAYKLLDLLKE-NGLVPDQWTYSVFIDTLCKSKRMEEACDLFN 518

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            +   GI+ + V Y  +IDG+ KA K +E  S    M  S  C P+  T NS+I      
Sbjct: 519 SLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERM-HSEDCLPNSSTYNSLIYGVCKE 577

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++        + MGVK  + T  IL +   R G +D    V + M      P V TY
Sbjct: 578 GKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTY 637

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
              I T+  +G++++ E    +M   G+ P+S+TY  L+SAY + GL     ++L+++ +
Sbjct: 638 TAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLD 697

Query: 390 SDVILDTPFFNCII 403
           +      P +N +I
Sbjct: 698 AGCDPSHPIWNNLI 711



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++   +++ +L++ML +    ++   ++  ML+D + P++     +V+AY + G + EA 
Sbjct: 175 FKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEAN 234

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             ++ +   +   PD +TY+ LI    + +  +   K+   M   G   + V+Y TII G
Sbjct: 235 LYVSKIFQ-AGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHG 293

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVK 288
             +A + +E  S F  M E   C+P + T   +I A +GN  N+E M+  +NE      +
Sbjct: 294 LCEAGRIDEGISLFKKMRED-DCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCE 351

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ T  ++  +  +    D+ R +++ M ++   P+VVTYN +I  + + G IE   E 
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              M+    +PN  TY  L+  +SK   + K  ++L ++  S +      +N +I    +
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           AG  +   +L   +KE   VPD  T++  I         E A +L N +
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSL 520



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 167/362 (46%), Gaps = 3/362 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            + +F  +R++   +    T+T ++  + K ++ +++  +   M+  GL PSV  Y AL+
Sbjct: 338 GMDLFNEMRERSC-EPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALI 396

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y + G ++ A   +  M+S ++C+P+  TY+ LI   +K         +L++M    +
Sbjct: 397 RGYCEEGRIEAALEILGLMES-NNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKL 455

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S VTYN++I    KA  F+        + E+G   PD +T +  I     S  +E+  
Sbjct: 456 TPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLV-PDQWTYSVFIDTLCKSKRMEEAC 514

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             +N     G+KA+      L   + +AG  D+  S+++ M      P   TYN +I   
Sbjct: 515 DLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGV 574

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K G +++     + M   G+KP   TY  L+    + G     + +  Q+ +     D 
Sbjct: 575 CKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDV 634

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +   I  Y  +G+V++   +   M E   +PD++T+  +I AY  LG+   A N+  +
Sbjct: 635 YTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKR 694

Query: 457 MI 458
           M+
Sbjct: 695 ML 696



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 15/337 (4%)

Query: 134 SLLFEVMLSDGL-----KPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDV 185
           S L ++++ + L     K  + +  A VS      LLD   +     ND+K     K  V
Sbjct: 124 SFLLKILIPNNLFGVGEKIRISMIKACVSVDDIRFLLDFLRQMNRDDNDIKF----KLSV 179

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            +Y+ L+    +F   D ++++  EM    I  +  T NT+++ Y K     E     S 
Sbjct: 180 RSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSK 239

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           + ++G   PD FT  S+I  Y  + ++    K +N     G + +  +   +      AG
Sbjct: 240 IFQAG-LSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
             D+  S+   M++   +PTV TY ++I   FG   ++E M+  F +M+ R  +PN  TY
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTY 357

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             +V A  K   + +   IL ++    ++     +N +I  Y + G +E   E+   M+ 
Sbjct: 358 TVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMES 417

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +C P+  T+  +I  ++       A  L +KM+  K
Sbjct: 418 NNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESK 454


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 164/353 (46%), Gaps = 2/353 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q  Y     ++  L+ +L K  + +     +  ML  G  P+   Y  L+ +  Q+   +
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFE 69

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA S    M +   C P+V++YSILI    +  + D   ++L EM   G + + VTY ++
Sbjct: 70  EARSVFRGM-AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSL 128

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + G  K  K +E    FS MV  G C PD    N +I  +   G++ +  + + E    G
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRG-CPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
               + T N L   + R G + +++S+   M ++   P + T+N +++ F K G + +  
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F +M+  G  P+ ++Y +L+      G   +   +LR++  S V  D   +N +I  Y
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY 307

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            ++G ++   +LF  + +    PD  +++T+I      G   AA  +   MIA
Sbjct: 308 SKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIA 360



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 140/321 (43%), Gaps = 2/321 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           +Q    T+  L+  L K  + ++A  LF  M+  G  P   VY  L+  + + G + EA+
Sbjct: 118 HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAY 177

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
               +M     C P V+TY+ L+   ++   F  ++ +  +M   G   +  T+N ++DG
Sbjct: 178 RLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K     E    F  M  S GC PD+ + N+++    + G   + ++   E    GV  
Sbjct: 237 FCKMGDMVEAHRLFLEM-RSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGP 295

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           DI + NIL   Y ++G  D    +   + K    P   +Y+ +I+   +AG +      F
Sbjct: 296 DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVF 355

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M   G  P++     LV    +   + +   + + +   + +   P +N ++    +A
Sbjct: 356 KDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA 415

Query: 410 GDVEKMGELFLTMKERHCVPD 430
              + + E+F  + ER   PD
Sbjct: 416 KRSDDVCEIFHELTERGFSPD 436


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 168/368 (45%), Gaps = 2/368 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K +++  A ++F  +++   +    + +T ++ M  K  + E A  L E M   G  P+V
Sbjct: 242 KLERYDFAFRLFDEMKENGLHPTE-KIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT L+   G+ G +D+A+S   +M     CKPDV   + LI    +  R +   K+  
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLK-DGCKPDVVLINNLINILGRAGRLEDALKLFG 359

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M  L    + VTYNT+I    ++K      + +   +++ G  P  FT   +I  +  +
Sbjct: 360 KMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKT 419

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +EK      E +  G          L  S GRA  Y+    +   +++     +   Y
Sbjct: 420 NRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVY 479

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            ++I+ FG  G +    + F + +  G  P+  TY +L+S   +AG+I +  S++R +  
Sbjct: 480 AVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRE 539

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           +    D    N I++   + G  ++  E+F  MKE   +PD +++ T++   +  GM E 
Sbjct: 540 NGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEM 599

Query: 450 AQNLENKM 457
           A  L  +M
Sbjct: 600 AAKLMREM 607



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 38/332 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  LGK  + + A  LF  ML DG KP V +   L++  G++G L++A      M
Sbjct: 302 TYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM 361

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
            S+  C P+V                                    +TY+ILI    K +
Sbjct: 362 DSLQ-CAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTN 420

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +    +L EM   G       Y ++ID  G+AK++E     F  + E+ G        
Sbjct: 421 RVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG-RSSARVY 479

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             MI  +GN G +      + E   +G   D+ T N L     RAGM D+  S+M  M++
Sbjct: 480 AVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRE 539

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + ++NI++    K G  ++  E F KMK   + P++++Y +++S  S+AG+   
Sbjct: 540 NGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEM 599

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
              ++R+++      D+  ++ I+ A G+  +
Sbjct: 600 AAKLMREMKLKGFEYDSITYSSILEAVGKVDE 631



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 149/340 (43%), Gaps = 6/340 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +++++ +LGK K   +A  +F  +      P+  VY  L+      G  ++     N++ 
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEIC 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S  +C PD  TYS LI +  K  R+D   ++  EM   G+  +   Y TI+  Y K  K 
Sbjct: 222 SEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKV 281

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTL 294
           E        M +  GC P +FT   +I   G  G ++     +  FN++  G K D+  +
Sbjct: 282 EAALRLVEEM-KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLF--FNMLKDGCKPDVVLI 338

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMK 353
           N L    GRAG  +    +   M      P VVTYN VI+  F       +   +F+KMK
Sbjct: 339 NNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMK 398

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+ P+S TY  L+  + K   + K   +L +++          +  +I + G+A   E
Sbjct: 399 ANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYE 458

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              ELF  +KE         +A MI+ +   G    A +L
Sbjct: 459 AANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDL 498



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 175/390 (44%), Gaps = 19/390 (4%)

Query: 88  AIKQKKWQLALKIFGLLRQQQ-----WYQARCQ-------TFTKLMVMLGKCKQPEQASL 135
           ++   +W   LKI G  +        +YQ + +        +  L++ML      E+   
Sbjct: 156 SVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHE 215

Query: 136 LFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           L+  + S+G   P    Y+AL+SA+G+    D AF   ++MK  +   P    Y+ ++  
Sbjct: 216 LYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKE-NGLHPTEKIYTTILAM 274

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K ++ +   +++ EM   G   +  TY  +I G GK  + ++  S F  M++  GC P
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKD-GCKP 333

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS-YGRAGMYDKMRSV 313
           D+  +N++I+  G +G +E   K + + + +    ++ T N + K+ +       +    
Sbjct: 334 DVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALW 393

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            + M+     P+  TY I+I+ F K   +EK     ++M  +G  P    YCSL+ +  +
Sbjct: 394 FEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGR 453

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           A      + + ++++ +        +  +I  +G  G +    +LF   ++  C PD  T
Sbjct: 454 AKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYT 513

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +  ++      GM + A +L   M  M+EN
Sbjct: 514 YNALMSGMIRAGMIDEAHSL---MRNMREN 540



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 42/293 (14%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y AL+    +SGL+DE + TI DM                I+S                
Sbjct: 126 TYMALIRCLEESGLVDEMWRTIQDM----------------IRS---------------- 153

Query: 211 MSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
                  CS     ++ I+   GKAK   +  S F   ++   C+P     N++I    +
Sbjct: 154 ------PCSVGPAEWSEILKILGKAKMVNKALSVFY-QIKGRKCNPTATVYNTLILMLMH 206

Query: 269 SGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            G+ EK+ + YNE    G    D  T + L  ++G+   YD    + D M++    PT  
Sbjct: 207 EGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEK 266

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y  ++  + K   +E      ++MK +G  P   TY  L+    K G +    S+   +
Sbjct: 267 IYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM 326

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                  D    N +I+  G+AG +E   +LF  M    C P+ +T+ T+I+A
Sbjct: 327 LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKA 379



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++ F     TY  +I    ++G +++M    + M           +  ++    KA ++
Sbjct: 116 KRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMV 175

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPDNITFAT 436
            K  S+  Q++          +N +I      G  EK+ EL+  +  E +C PD IT++ 
Sbjct: 176 NKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSA 235

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKEN 463
           +I A+  L   + A  L ++   MKEN
Sbjct: 236 LISAFGKLERYDFAFRLFDE---MKEN 259


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--------------------------KS 177
            L P    Y+ L++ +G+ GL D A S +  M                          K+
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 VS--------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +S           PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +A
Sbjct: 243 QEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L+    Y      +  ++++ GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKNSG-YTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 240 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAIVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K+ G  P+ + Y +++  + KA L  +  S++ +++ + VI +T  ++ +
Sbjct: 61  SKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 170/353 (48%), Gaps = 5/353 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  +W+ A+ I   + ++    +R  T+  L+   G      +A  + + M  +G+ P +
Sbjct: 190 RAGQWRWAMNIMEDMLREAIPPSR-STYNNLINACGSSGNWREALKVSKQMTENGVGPDL 248

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  ++SAY       +A S    MK  ++ +PD  T +I+I    K  + +    I  
Sbjct: 249 VTHNIVLSAYKTGAQYSKALSYFELMKG-TNIRPDTTTRNIVIYCLVKLGQCEKAIDIFN 307

Query: 210 EMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
            M     EC    VT+ +II  Y  + + E  ++ FS M+ + G  P I + N++I AY 
Sbjct: 308 SMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTML-AEGLTPTIVSYNALIGAYA 366

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G  E+    + +    G+  D+ +   L  SYGR+    K R + + M+K    P VV
Sbjct: 367 FHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVV 426

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           ++N +I+ +G  G +    +  ++M+  G+ PN +T C+L++A  + G  + +D++L   
Sbjct: 427 SFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAA 486

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +   + L+T   N  I +Y   G+ EK   L+ +M++    P+++T+  +I  
Sbjct: 487 KMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISG 539



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 158/359 (44%), Gaps = 44/359 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +K  + + A+ IF  +R+++   A C+    TFT ++ +     Q E    +F  ML++G
Sbjct: 294 VKLGQCEKAIDIFNSMREKR---AECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEG 350

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           L P++  Y AL+ AY   G+ +EA S    +K+ S   PDV                   
Sbjct: 351 LTPTIVSYNALIGAYAFHGMSEEALSVFKKIKA-SGLLPDV------------------- 390

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                           V+Y +++  YG++K+ ++    F+ M++     P++ + N++I 
Sbjct: 391 ----------------VSYTSLLSSYGRSKQPKKAREMFN-MMKKAKLKPNVVSFNALID 433

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AYG++G +    K   E    G+  +I T+  L  + GR G    + +V+   + R    
Sbjct: 434 AYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKL 493

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V  N  I ++   G  EK    +  M+   + PNS+TY  L+S   K     K     
Sbjct: 494 NTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFF 553

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
             +    + L     + +I AY + G + +   +F  MK   C PD ITF  M+ AYNA
Sbjct: 554 ADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNA 612



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 160/360 (44%), Gaps = 9/360 (2%)

Query: 107 QQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           Q+W   RC    +T+  L+   G+  Q   A  + E ML + + PS   Y  L++A G S
Sbjct: 170 QEW---RCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSS 226

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           G   EA      M   +   PD+ T++I++ +     ++         M    I     T
Sbjct: 227 GNWREALKVSKQMTE-NGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTT 285

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
            N +I    K  + E+    F++M E    C PDI T  S+I  Y  SG +E  +  ++ 
Sbjct: 286 RNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFST 345

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+   I + N L  +Y   GM ++  SV   ++     P VV+Y  ++ ++G++  
Sbjct: 346 MLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQ 405

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            +K  E F  MK   +KPN +++ +L+ AY   GL+     +LR++E   +  +      
Sbjct: 406 PKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICT 465

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +++A G+ G    +  +    K R    + +   + I +Y  +G  E A  L N M  MK
Sbjct: 466 LLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMK 525



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 145/343 (42%), Gaps = 38/343 (11%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  L+    Q G L+ +      MK   +       Y+++I+   + +  D    +  EM
Sbjct: 110 FPRLIKEITQRGALEHSNLVFRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEM 169

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                +  + TYN +I+ +G+A ++    +    M+      P   T N++I+A G+SGN
Sbjct: 170 QEWRCKPDSETYNALINAHGRAGQWRWAMNIMEDMLRE-AIPPSRSTYNNLINACGSSGN 228

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
             +  K   +    GV  D+ T NI+  +Y     Y K  S  + M+     P   T NI
Sbjct: 229 WREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNI 288

Query: 332 VIETFGKAGHIEKMEEYFKKMKHR------------------------------------ 355
           VI    K G  EK  + F  M+ +                                    
Sbjct: 289 VIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLA 348

Query: 356 -GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P  ++Y +L+ AY+  G+  +  S+ ++++ S ++ D   +  ++S+YG++   +K
Sbjct: 349 EGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKK 408

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E+F  MK+    P+ ++F  +I AY + G+   A  +  +M
Sbjct: 409 AREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM 451



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 160/364 (43%), Gaps = 35/364 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T L+   G+ KQP++A  +F +M    LKP+V  + AL+ AYG +GLL +A   + +M
Sbjct: 392 SYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM 451

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P++ T   L+ +C +  +   I+ +L+     GI+ + V  N+ I  Y    +
Sbjct: 452 EQ-DGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGE 510

Query: 236 FEEMESSFSAMVE--------------SGGCH-----------PDIFTL---------NS 261
           +E+  + +++M +              SG C             D+  L         +S
Sbjct: 511 YEKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSS 570

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I AY   G I + E  +    + G   DI T   +  +Y     + K   ++  M+   
Sbjct: 571 VICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYD 630

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
                +  + ++  F K G+  ++    + MK + +  +   +  +VSA S       + 
Sbjct: 631 IQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTIL 690

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++++ +E S  ++     N ++   G++G +E M +LF  +       +  T++ M++  
Sbjct: 691 NLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIMLKNL 750

Query: 442 NALG 445
            A+G
Sbjct: 751 LAVG 754



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 2/202 (0%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N MI  +      ++    + E      K D +T N L  ++GRAG +    ++M+ M +
Sbjct: 147 NMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIMEDMLR 206

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P+  TYN +I   G +G+  +  +  K+M   G+ P+ +T+  ++SAY       K
Sbjct: 207 EAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSK 266

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNITFATM 437
             S    ++ +++  DT   N +I    + G  EK  ++F +M+E+   C PD +TF ++
Sbjct: 267 ALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSI 326

Query: 438 IQAYNALGMTEAAQNLENKMIA 459
           I  Y+  G  E  + + + M+A
Sbjct: 327 IHLYSLSGQVENCKAVFSTMLA 348



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 130/317 (41%), Gaps = 38/317 (11%)

Query: 63  NIEKKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           NI+  +S+ K + +    V    A+   +   +++ A+ ++  +R+ +       T+T L
Sbjct: 478 NIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMK-VAPNSVTYTVL 536

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +    K  +  +A   F  M+   +  + +V ++++ AY + G + EA S    MK ++ 
Sbjct: 537 ISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMK-MAG 595

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------- 232
           C PD+ T++ ++ +      +     ++ EM    I+   +  + ++  + K        
Sbjct: 596 CCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVL 655

Query: 233 --AKKFEEMESSFS-----AMVESGGCHPD-------------------IFTLNSMISAY 266
             A+  +E E  FS      MV +     D                   I  LN ++   
Sbjct: 656 ILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVL 715

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G SG IE M K + +    G + +  T +I+ K+    G + K   V+++M+     P++
Sbjct: 716 GRSGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSI 775

Query: 327 VTYNIVIETFGKAGHIE 343
             Y  +     K G  E
Sbjct: 776 GMYYDISSYVQKGGGAE 792


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 149/312 (47%), Gaps = 8/312 (2%)

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            AL++A G++       + + +MK + D +P+V T+ ILI    KF R D   ++  +M+
Sbjct: 309 NALLTALGRAREFKRMNTLLAEMKEM-DIQPNVVTFGILINHLCKFRRVDEALEVFEKMN 367

Query: 213 ------YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
                 +L +E   +TYNT+IDG  K  + EE       M     C P+  T N +I  Y
Sbjct: 368 GGESNGFL-VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGY 426

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +  IE   + +++ N  GV  ++ TLN L     + G  +      + MQ +      
Sbjct: 427 CKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNA 486

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTY  +I  F    +IEK  E F +M   G  P++I Y +L+S  S+AG + +   +L +
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSK 546

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++ +    D   FN +I+ + +   +++  E+   M+     PD +T+ T+I  ++  G 
Sbjct: 547 MKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 447 TEAAQNLENKMI 458
              A  L  KM+
Sbjct: 607 FSTAHRLMKKMV 618



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 157/326 (48%), Gaps = 6/326 (1%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVM---LSDG--LKPSVDVYTALVSAYGQSGLL 165
           Q    TF  L+  L K ++ ++A  +FE M    S+G  ++P V  Y  L+    + G  
Sbjct: 337 QPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQ 396

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           +E    +  M+S   C P+  TY+ LI    K    +   ++  +M+  G+  + VT NT
Sbjct: 397 EEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNT 456

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++DG  K  +       F+ M +  G   +  T  ++I A+ N  NIEK  + ++E    
Sbjct: 457 LVDGMCKHGRINGAVEFFNEM-QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G   D      L     +AG  D+   V+  M++  F P +V++N++I  F +   +++ 
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E  K+M++ G+KP+ +TY +L+S +SK G       +++++    ++     +  +I A
Sbjct: 576 YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHA 635

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDN 431
           Y   G++++  ++F  M     VP N
Sbjct: 636 YCLNGNLDEAMKIFRDMSSTSKVPPN 661



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 12/330 (3%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+  LG+ ++ ++ + L   M    ++P+V  +  L++   +   +DEA      M    
Sbjct: 311 LLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGE 370

Query: 180 D----CKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                 +PDV TY+ LI    K  R      L+E++ ++   +    + VTYN +IDGY 
Sbjct: 371 SNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMP---NTVTYNCLIDGYC 427

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           KA   E     F  M    G  P++ TLN+++      G I    +++NE    G+K + 
Sbjct: 428 KASMIEAARELFDQM-NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNA 486

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L +++      +K   + D M +    P  + Y  +I    +AG +++      K
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSK 546

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G  P+ +++  L++ + +   + +   +L+++EN+ +  D   +N +IS + + GD
Sbjct: 547 MKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAY 441
                 L   M +   VP  +T+  +I AY
Sbjct: 607 FSTAHRLMKKMVKEGLVPTVVTYGALIHAY 636



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 157/349 (44%), Gaps = 7/349 (2%)

Query: 104 LRQQQWYQARC--QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           L ++   Q RC   T T   ++ G CK    E A  LF+ M  DG+ P+V     LV   
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
            + G ++ A    N+M+     K +  TY+ LI++    +  +   ++  EM   G    
Sbjct: 462 CKHGRINGAVEFFNEMQG-KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPD 520

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
           A+ Y T+I G  +A K +      S M E+ G  PDI + N +I+ +     +++  +  
Sbjct: 521 AIVYYTLISGLSQAGKLDRASFVLSKMKEA-GFSPDIVSFNVLINGFCRKNKLDEAYEML 579

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            E    G+K D  T N L   + + G +     +M  M K    PTVVTY  +I  +   
Sbjct: 580 KEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLN 639

Query: 340 GHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           G++++  + F+ M     + PN++ Y  L+++  +   +    S++  ++   V  +T  
Sbjct: 640 GNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNT 699

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           FN +     +   + K  EL   M E  C PD IT   + +  +A+G T
Sbjct: 700 FNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGET 748



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 4/307 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  +   A++ F  + Q +  +    T+T L+         E+A  LF+ ML  G
Sbjct: 458 VDGMCKHGRINGAVEFFNEM-QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG 516

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P   VY  L+S   Q+G LD A   ++ MK  +   PD+ ++++LI    + ++ D  
Sbjct: 517 CSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE-AGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L EM   GI+   VTYNT+I  + K   F         MV+ G   P + T  ++I 
Sbjct: 576 YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLV-PTVVTYGALIH 634

Query: 265 AYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           AY  +GN+++  K + + +    V  +    NIL  S  R    D   S+MD M+ +   
Sbjct: 635 AYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVK 694

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P   T+N + +   +   + K  E   +M      P+ IT   L    S  G   K+ S 
Sbjct: 695 PNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSF 754

Query: 384 LRQVENS 390
           ++  E S
Sbjct: 755 VQGYEVS 761



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 166/393 (42%), Gaps = 50/393 (12%)

Query: 97  ALKIFGLLRQQQWYQAR--CQ-----TFTKLMVMLGKCKQPEQASLL---FEVMLSDGLK 146
           ALK F       W QA   CQ     +FT   V     ++P   + L   F+   S  + 
Sbjct: 103 ALKFF------NWVQANSPCQDSPLLSFTLEAVFEHASREPNSHNKLLDLFKTSKSHKIP 156

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY--SILIKSCTKFHRFDLI 204
            SV+  T L+  +G++ ++DE+F   N++     C     T+  +ILI    +  R D  
Sbjct: 157 LSVNAATLLIRCFGRAQMVDESFLVYNEL-----CPSRRLTHIRNILIDVLFRKGRVDDA 211

Query: 205 EKILAEMSYLGIE------CSAVTYNTII--DGYGKAKKFEEMESSFSAMVESGGCHPDI 256
             +L EM     E         + ++ +   D  G+A   EE+    S   E     P+ 
Sbjct: 212 LHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHE-VFPNS 270

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             L  +IS    SG  ++     +    +G   +  + N L  + GRA  + +M +++  
Sbjct: 271 IWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAE 330

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRG--MKPNSITYCSLVSAY 371
           M++    P VVT+ I+I    K   +++  E F+KM   +  G  ++P+ ITY +L+   
Sbjct: 331 MKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGL 390

Query: 372 SKA-------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            K        GL+ ++ S  R + N      T  +NC+I  Y +A  +E   ELF  M +
Sbjct: 391 CKVGRQEEGLGLVERMRSQPRCMPN------TVTYNCLIDGYCKASMIEAARELFDQMNK 444

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               P+ +T  T++      G    A    N+M
Sbjct: 445 DGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM 477


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 2/347 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  Y+    TFT L+  L    +  +A  L + M+  G +P++  Y  +V+   + G  D
Sbjct: 145 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 204

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            A + +N M++ +  + DV  ++ +I S  K+   D    +  EM   GI  + VTY+++
Sbjct: 205 LALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 263

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I       ++ +     S M+E    +P++ T N++I A+   G   + EK Y++     
Sbjct: 264 ISCLCSYGRWSDASQLLSDMIEKK-INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 322

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  DI T N L   +      DK + + +FM  +  FP VVTYN +I+ F K+  +E   
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 382

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M HRG+  +++TY +L+      G       + +Q+ +  V  D   ++ ++   
Sbjct: 383 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 442

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              G +EK  E+F  M++     D   + TMI+     G  +   +L
Sbjct: 443 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 489



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 3/351 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +    AL +F  + + +  +    T++ L+  L    +   AS L   M+   
Sbjct: 229 IDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ L+       R D  
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKA 346

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +++   M         VTYNT+I G+ K+K+ E+    F  M   G    D  T  ++I 
Sbjct: 347 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQ 405

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
              + G+ +  +K + +    GV  DI T +IL       G  +K   V D+MQK     
Sbjct: 406 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 465

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S      L+ +  ++L
Sbjct: 466 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 525

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++++    + ++  +N +I A+ + GD     EL   M+    V D  T  
Sbjct: 526 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG 576



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+   A  L + M+  G +P  
Sbjct: 94  RRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 152

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +T L+          EA + ++ M     C+P++ TY +++    K    DL   +L 
Sbjct: 153 ITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 211

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    IE   V +NTIID   K +  ++  + F  M E+ G  P++ T +S+IS   + 
Sbjct: 212 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSY 270

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +W +   L+                             D ++K+   P +VT+
Sbjct: 271 G------RWSDASQLLS----------------------------DMIEKKIN-PNLVTF 295

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+ F K G   + E+ +  M  R + P+  TY SLV+ +     + K   +   + +
Sbjct: 296 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 355

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            D   D   +N +I  + ++  VE   ELF  M  R  V D +T+ T+IQ     G  + 
Sbjct: 356 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 415

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 416 AQKVFKQMVS 425



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 120/294 (40%), Gaps = 36/294 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  ++ L+ +  K  +FD++  +  +M  L I     TYN +I+ + +  +     + 
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M++  G  P I TL+S+++ Y +   I       ++   MG + D  T   L     
Sbjct: 105 LGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 163

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG---------------------- 340
                 +  +++D M +R   P +VTY +V+    K G                      
Sbjct: 164 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 223

Query: 341 -------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
                        H++     FK+M+ +G++PN +TY SL+S     G       +L  +
Sbjct: 224 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 283

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
               +  +   FN +I A+ + G   +  +L+  M +R   PD  T+ +++  +
Sbjct: 284 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 337



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K KKF+ + S    M      H  ++T N +I+ +     I      
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHG-LYTYNILINCFCRRSQISLALAL 104

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G +  I TL+ L   Y          +++D M +  + P  +T+  +I     
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
                +      +M  RG +PN +TY  +V+   K G      ++L ++E + +  D   
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           FN II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 459 AMKEN 463
             K N
Sbjct: 285 EKKIN 289


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 2/347 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  Y+    TFT L+  L    +  +A  L + M+  G +P++  Y  +V+   + G  D
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            A + +N M++ +  + DV  ++ +I S  K+   D    +  EM   GI  + VTY+++
Sbjct: 243 LALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I       ++ +     S M+E    +P++ T N++I A+   G   + EK Y++     
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKK-INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  DI T N L   +      DK + + +FM  +  FP VVTYN +I+ F K+  +E   
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M HRG+  +++TY +L+      G       + +Q+ +  V  D   ++ ++   
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              G +EK  E+F  M++     D   + TMI+     G  +   +L
Sbjct: 481 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 3/351 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +    AL +F  + + +  +    T++ L+  L    +   AS L   M+   
Sbjct: 267 IDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ L+       R D  
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKA 384

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +++   M         VTYNT+I G+ K+K+ E+    F  M   G    D  T  ++I 
Sbjct: 385 KQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQ 443

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
              + G+ +  +K + +    GV  DI T +IL       G  +K   V D+MQK     
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S      L+ +  ++L
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++++    + ++  +N +I A+ + GD     EL   M+    V D  T  
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG 614



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+   A  L + M+  G +P  
Sbjct: 132 RRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +T L+          EA + ++ M     C+P++ TY +++    K    DL   +L 
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 249

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    IE   V +NTIID   K +  ++  + F  M E+ G  P++ T +S+IS   + 
Sbjct: 250 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSY 308

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +W +   L+                             D ++K+   P +VT+
Sbjct: 309 G------RWSDASQLLS----------------------------DMIEKKIN-PNLVTF 333

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+ F K G   + E+ +  M  R + P+  TY SLV+ +     + K   +   + +
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            D   D   +N +I  + ++  VE   ELF  M  R  V D +T+ T+IQ     G  + 
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 453

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 454 AQKVFKQMVS 463



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 120/294 (40%), Gaps = 36/294 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  ++ L+ +  K  +FD++  +  +M  L I     TYN +I+ + +  +     + 
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M++  G  P I TL+S+++ Y +   I       ++   MG + D  T   L     
Sbjct: 143 LGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG---------------------- 340
                 +  +++D M +R   P +VTY +V+    K G                      
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 261

Query: 341 -------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
                        H++     FK+M+ +G++PN +TY SL+S     G       +L  +
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
               +  +   FN +I A+ + G   +  +L+  M +R   PD  T+ +++  +
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 375



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K KKF+ + S    M      H  ++T N +I+ +     I      
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHG-LYTYNILINCFCRRSQISLALAL 142

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G +  I TL+ L   Y          +++D M +  + P  +T+  +I     
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
                +      +M  RG +PN +TY  +V+   K G      ++L ++E + +  D   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           FN II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 459 AMKEN 463
             K N
Sbjct: 323 EKKIN 327


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 174/381 (45%), Gaps = 10/381 (2%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           K + A+++   + Q+  Y       T  +++   C+     QA  L + M   G  P V 
Sbjct: 219 KLKQAMEVLDRMLQRDCYP---DVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVV 275

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  LV+   + G LDEA   +NDM S S C+P+V T++I+++S     R+   EK+LA+
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S VT+N +I+   +             M + G C P+  + N ++  +    
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG-CQPNSLSYNPLLHGFCKEK 393

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++  ++       G   DI T N +  +  + G  +    +++ +  +   P ++TYN
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VI+   KAG   K  +   +M+ + +KP++ITY SLV   S+ G + +      + E  
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V  +   FN I+    +    ++  +  + M  R C P   ++  +I+     GM + A
Sbjct: 514 GVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEA 573

Query: 451 QNLENKMI---AMKENSGKKL 468
             L N++     MK +S +++
Sbjct: 574 LELLNELCNKGLMKRSSAEQV 594



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T  +    +GK ++   A+ + EV+   G  P V  Y  ++S Y ++G ++ A S ++
Sbjct: 140 CTTLIRGFCRMGKTRK---AAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLD 196

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID----- 228
            M SVS   PDV TY+ +++S     +     ++L  M         +TY  +I+     
Sbjct: 197 RM-SVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252

Query: 229 -GYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
            G G+A K  +EM           GC PD+ T N +++     G +++  K+ N+    G
Sbjct: 253 SGVGQAMKLLDEMRDR--------GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + ++ T NI+ +S    G +     ++  M ++ F P+VVT+NI+I    + G + +  
Sbjct: 305 CQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAI 364

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           +  +KM   G +PNS++Y  L+  + K   + +    L ++ +     D   +N +++A 
Sbjct: 365 DILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + G VE   E+   +  + C P  IT+ T+I      G T  A  L ++M A
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 32/328 (9%)

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L+E F  + +M    +  PD+   + LI+   +  +     KIL  +   G     
Sbjct: 114 RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDV 172

Query: 221 VTYNTIIDGYGKAKK-------FEEMESS---------FSAMVESG-------------- 250
           +TYN +I GY KA +        + M  S           ++ +SG              
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232

Query: 251 -GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
             C+PD+ T   +I A      + +  K  +E    G   D+ T N+L     + G  D+
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++ M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              + GL+ +   IL ++       ++  +N ++  + +   +++  E    M  R C P
Sbjct: 353 FLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T+ TM+ A    G  E A  + N++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQL 440



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 14/236 (5%)

Query: 231 GKAKKFEEMESSFSAMVESGGCH----PDIFTL-----NSMISAYGNSGNIEKMEKWYNE 281
           G+A+KF+ + S  S    +G  H       F L     N+ +     +G +E+  K+   
Sbjct: 70  GRAQKFDTLASGHSN--SNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLEN 127

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G   DI     L + + R G   K   +++ ++     P V+TYN++I  + KAG 
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGE 187

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           I        +M    + P+ +TY +++ +   +G + +   +L ++   D   D   +  
Sbjct: 188 INNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTI 244

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I A  +   V +  +L   M++R C PD +T+  ++      G  + A    N M
Sbjct: 245 LIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           + G +E+  ++ + M + G  P+ I   +L+  + + G   K   IL  +E S  + D  
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVI 173

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALGMTEAAQNLENK 456
            +N +IS Y +AG++       L++ +R  V PD +T+ T++++    G  + A  + ++
Sbjct: 174 TYNVMISGYCKAGEINNA----LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 457 MI 458
           M+
Sbjct: 230 ML 231


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 192/438 (43%), Gaps = 74/438 (16%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           ++ Q  Y AR   +  ++ +  +  Q +QA  LF  M     KP  D+Y +L+ A+ ++G
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG 60

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
               A + + DM   +   P   TY+ +I +C     +    ++  +M+  G+    VT+
Sbjct: 61  QWRWAINIMEDMLRAA-IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTH 119

Query: 224 NTIIDG------YGKA-KKFEEMESS----------------------------FSAMVE 248
           N ++        Y KA   FE M+ +                            F++M E
Sbjct: 120 NIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE 179

Query: 249 -SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
               C PD+ T  S++ +Y   G +E  +  ++     GVK +I   N L  +Y   GM+
Sbjct: 180 RRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMH 239

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +  ++ + ++K    P +V+Y  ++  +G++   EK  E F KMK    KPN ++Y +L
Sbjct: 240 REALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNAL 299

Query: 368 VSAYSKAGL-----------------------------------IMKVDSILRQVENSDV 392
           + AY  AG+                                   I ++++IL    +  +
Sbjct: 300 IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
            L+T  +N  I +Y   GD EK  EL+ +M+E +  PD +T+  +I   + LG  TE+ +
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLR 419

Query: 452 NLENKMIAMKENSGKKLI 469
             E+ M+  K +S K+ +
Sbjct: 420 FFED-MVDSKVSSTKEFL 436


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 159/332 (47%), Gaps = 10/332 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ +  K     +A  + E M   G+ P+  +Y  ++  Y + G    AF    DM
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 253

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            S +  KPD+  Y+IL+ +  K  R D    ++E I A      IE    TY +I+DGY 
Sbjct: 254 VS-AGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIE----TYTSILDGYV 308

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K    ++    F   +++ G  P + + NS++S    +  +E      NE    GV  + 
Sbjct: 309 KGGNIQKALEVFD-RIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNE 367

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           ++   LT+ Y RAG  +K   +   M+K      +V Y  +++   K+G +++  E F++
Sbjct: 368 RSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQ 427

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           +   G+K N ITYC+++  +++ G + K   +L  ++     LDT  +   I A  ++GD
Sbjct: 428 ITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGD 487

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            E++ E    M+E+    +  T+ T+I  + A
Sbjct: 488 TEEVTETLAVMREKKLEVNARTYTTLIHGWLA 519



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 165/358 (46%), Gaps = 35/358 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T L+    + +  E A    E MLS G++ +  V+ +++S Y  +G  + A       K
Sbjct: 55  YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 114

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +  +  P    Y+ ++++  +    + +E +LA+M   G + +   Y T+++G+ + +  
Sbjct: 115 A-ENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 173

Query: 237 EEMESSFSAMVESG--------GCHPDIFTL---------------------NSMISA-- 265
           E+  S F  +   G        GC   +FT                      N MI A  
Sbjct: 174 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMI 233

Query: 266 ---YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
              Y   G+     K + +    G+K DI   NIL  ++ +AG  DK   V++ ++    
Sbjct: 234 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRL 293

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            PT+ TY  +++ + K G+I+K  E F ++K  G++P  ++Y SL+S  +KA  +     
Sbjct: 294 LPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARL 353

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +L ++  + V+ +   +  +   Y +AGDVEK   +F  MK+ +   D + +  +++A
Sbjct: 354 MLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKA 411



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 146/327 (44%), Gaps = 2/327 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E    L   M  +G + ++ +YT +++ + +    ++  S  + +K+     P   TY  
Sbjct: 139 ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG-LSPTAATYGC 197

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++K  TK         IL EM   G+  + + Y  I+DGY +   F      +  MV S 
Sbjct: 198 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV-SA 256

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PDI   N ++ A+  +G ++K            +   I+T   +   Y + G   K 
Sbjct: 257 GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKA 316

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V D ++     P VV+YN ++    KA  +E       +M   G+ PN  +Y +L   
Sbjct: 317 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEG 376

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y++AG + K   + ++++  ++ +D   +  ++ A  ++G +++  E+F  + +     +
Sbjct: 377 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHN 436

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            IT+ TM+  +   G    A++L N M
Sbjct: 437 RITYCTMLDGWARKGELSKARDLLNDM 463



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 149/327 (45%), Gaps = 2/327 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A   FE M +  +KP+V +YT+L+ AY ++  ++ A +   +M S    + +   +  +I
Sbjct: 36  ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLS-QGIQLNEAVFCSII 94

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
                    +  E    +     +    + YN+I+  Y +A   E +E+  + M E G  
Sbjct: 95  SGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG-F 153

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
             ++    ++++ +    + EK   +++     G+     T   + K + +AG   K   
Sbjct: 154 QGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALD 213

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           +++ M K    P  + Y ++++ + + G      + ++ M   G+KP+ + Y  LV A+ 
Sbjct: 214 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFC 273

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           KAG + K   +L  +E + ++     +  I+  Y + G+++K  E+F  +K     P  +
Sbjct: 274 KAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV 333

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           ++ +++         E A+ + N+M+A
Sbjct: 334 SYNSLLSGLAKARQMENARLMLNEMLA 360



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 138/304 (45%), Gaps = 35/304 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M+S GLKP + +Y  LV A+ ++G +D+A   + ++++ +   P + TY+ ++   
Sbjct: 249 VWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEA-NRLLPTIETYTSILDGY 307

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------EM--------E 240
            K        ++   +   G+    V+YN+++ G  KA++ E       EM        E
Sbjct: 308 VKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNE 367

Query: 241 SSFSAMVE----SGGCHP---------------DIFTLNSMISAYGNSGNIEKMEKWYNE 281
            S++A+ E    +G                   DI    +++ A   SG +++  + + +
Sbjct: 368 RSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQ 427

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+K +  T   +   + R G   K R +++ MQK  F    + Y   I+   ++G 
Sbjct: 428 ITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGD 487

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            E++ E    M+ + ++ N+ TY +L+  +  A    +  S   Q + S + LD+   NC
Sbjct: 488 TEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNC 547

Query: 402 IISA 405
           ++S 
Sbjct: 548 LLSG 551



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P +  Y ++++ + + G        F+ M+   +KPN   Y SL+ AY++A  +    + 
Sbjct: 15  PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 74

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
             ++ +  + L+   F  IIS Y  AG+ E     F   K  + VP  I + +++QAY  
Sbjct: 75  TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 134

Query: 444 LGMTEAAQNLENKM 457
            G  E  + L  +M
Sbjct: 135 AGNMETVEALLAQM 148



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 278 WYNEFNLMGV--KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           W+   N   V  K  ++   +L   Y R G     R+  + M+     P V  Y  +I  
Sbjct: 2   WHKIVNAFQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHA 61

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           + +A  +E      ++M  +G++ N   +CS++S Y+ AG     +    + +  +++  
Sbjct: 62  YAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPG 121

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKE 424
              +N I+ AY QAG++E +  L   M+E
Sbjct: 122 GIVYNSIVQAYCQAGNMETVEALLAQMEE 150


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  +M   G+  + ++A  +FE M     +PSV  Y A+++   + G   +A      M
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRM 137

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K +    PDVYT++I +KS     R     ++L  M   G E +AV+Y  +I G+ K   
Sbjct: 138 KDIG-IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENC 196

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M++ G C PDI T N +I      GN+++ EK +++    GV  ++ T N
Sbjct: 197 QIEAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I  +   R G  D+   +++ +      P V++YN +I  F K   + + E Y  KM + 
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN  TY ++++ + KAG++   D ILR       I D   ++ +I+     GD+ + 
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F    E+      I + T+++  +  G+   A  L   M+
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMM 418



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 157/373 (42%), Gaps = 40/373 (10%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G CK  +  +A      M++ G++P+   Y  +++ + ++G++  A   + D     
Sbjct: 292 LICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD-AMFK 350

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD +TYS LI         +    +  E    G + S + YNT++ G  K     + 
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 240 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 265
                 M+E G                                  GC PDIFT N++I  
Sbjct: 411 LQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDG 470

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           Y    N++K  +  +     G+  D+ T N L     +A   D +      M ++   P 
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           ++TYNI+IE+F K   + +  E FK+MK RG+ P+ +T C+L+      G + K   +  
Sbjct: 531 IITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFV 590

Query: 386 QVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            +E        T  FN +I+A+ +  +V    +LF  M    C PDN T+  MI +Y   
Sbjct: 591 TIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKT 650

Query: 445 GMTEAAQN--LEN 455
           G  + A    LEN
Sbjct: 651 GNIDLAHTFLLEN 663



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 5/331 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ ML  G+ P +  +  L+    + G + E+    + +     C P+++T++I 
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNIF 257

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I+   +    D   ++L  +   G+    ++YNT+I G+ K  K  E E     MV SG 
Sbjct: 258 IQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSG- 316

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+ FT N++I+ +  +G ++  +K   +    G   D  T + L       G  ++  
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +V     ++ F  +++ YN +++   K G + +  +  K M   G  P+  TY  +V+  
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G +   + IL        I D   FN +I  Y +  +++K  E+  TM      PD 
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
           IT+ T++   N L       N+ +   AM E
Sbjct: 497 ITYNTLL---NGLCKARKLDNVVDTFKAMLE 524



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 130/298 (43%), Gaps = 38/298 (12%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G C   +  +A  +F   +  G K S+ +Y  LV    + GL+ +A   + D
Sbjct: 357 FTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKD 416

Query: 175 ----------------------MKSVSD------------CKPDVYTYSILIKSCTKFHR 200
                                 M  +SD            C PD++T++ LI    K   
Sbjct: 417 MMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D   +IL  M   GI    +TYNT+++G  KA+K + +  +F AM+E  GC P+I T N
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEK-GCTPNIITYN 535

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I ++     + +  + + E    G+  DI TL  L       G  DK   +   ++K 
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 321 FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           + F  +   +NI+I  F +  ++   E+ F KM      P++ TY  ++ +Y K G I
Sbjct: 596 YKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNI 653



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 141/350 (40%), Gaps = 44/350 (12%)

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           ++  L+P    + A V  Y    L   A    N +K+    K  + TY  +I+      +
Sbjct: 1   MNRALQPK---HVAAVIRYQNDPL--NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGK 55

Query: 201 FDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
           F+ +E +LAEM    ++   +   Y  I+  YG+  K +E  + F  M +   C P + +
Sbjct: 56  FEAMEDVLAEMRK-NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERM-DFYDCEPSVQS 113

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---GR------------ 303
            N++++     G   +  K Y     +G+  D+ T  I  KS+   GR            
Sbjct: 114 YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 304 ---------------AGMYD-----KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
                          +G Y      +   + D M K+   P ++T+N +I    K G+++
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           + E+ F K+  RG+ PN  T+   +    + G I +   +L  + +  +  D   +N +I
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             + +   + +       M      P+  T+ T+I  +   GM + A  +
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 1/235 (0%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I+  G   KFE ME   + M ++            ++  YG  G +++    +  
Sbjct: 42  TYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFER 101

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            +    +  +Q+ N +       G + +   V   M+    +P V T+ I +++F   G 
Sbjct: 102 MDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGR 161

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                     M  +G + N+++YC+++S + K    ++   +  ++    +  D   FN 
Sbjct: 162 PTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNK 221

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 455
           +I    + G+V++  +LF  + +R   P+  TF   IQ     G + EAA+ LE+
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLES 276



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 3/249 (1%)

Query: 117 FTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G CKQ   ++A  + + MLS G+ P V  Y  L++   ++  LD    T   
Sbjct: 462 FTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKA 521

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M     C P++ TY+ILI+S  K  +     ++  EM   G+    VT  T+I G     
Sbjct: 522 MLE-KGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNG 580

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + ++    F  + +           N MI+A+    N+   EK +++        D  T 
Sbjct: 581 ELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTY 640

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            ++  SY + G  D   + +     +   P+  T   V+        + +       M  
Sbjct: 641 RVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQ 700

Query: 355 RGMKPNSIT 363
            G+ P  + 
Sbjct: 701 NGIVPEEVN 709



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 20/198 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   KQ+    A++I   +           T+  L+  L K ++ +     F+ ML  G
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSH-GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG 526

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTK------ 197
             P++  Y  L+ ++ +   + EA     +MK+     PD+ T   LI   C+       
Sbjct: 527 CTPNIITYNILIESFCKDRKVSEAMELFKEMKT-RGLTPDIVTLCTLICGLCSNGELDKA 585

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG--CHPD 255
           +  F  IEK   + SY     S   +N +I+ + +       E  F  M   GG  C PD
Sbjct: 586 YELFVTIEKEY-KFSY-----STAIFNIMINAFCEKLNVSMAEKLFHKM---GGSDCAPD 636

Query: 256 IFTLNSMISAYGNSGNIE 273
            +T   MI +Y  +GNI+
Sbjct: 637 NYTYRVMIDSYCKTGNID 654


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI    V YN++I+ +GKAK F+E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTIL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG     ++ ++ +     MG++
Sbjct: 122 TMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 166/362 (45%), Gaps = 39/362 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            V+   PD  +YS ++    + H+F     +  EM  +       T N +ID YG+    
Sbjct: 107 -VAGVMPDTVSYSTILTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F +M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADRLFWSM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSIL----------------------------- 384
             G++ + + Y +++ AY +AGL+     +L                             
Sbjct: 282 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATW 341

Query: 385 --RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             RQ  ++  + D   F  +I  + +      +GE+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 AL 444
            L
Sbjct: 402 KL 403



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +   ++     +E  + GV  D  + + +   Y 
Sbjct: 67  FSRLKRSG-ITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+    ++ +  F  M+  G++PN +
Sbjct: 126 ENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  ++ I
Sbjct: 61  SKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTI 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E +C+ D  T   MI  Y  L M + A  L
Sbjct: 121 LTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRL 171



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 78/176 (44%), Gaps = 6/176 (3%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  +    T++ ++ + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+
Sbjct: 246 QNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLV 305

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   ++++K     +PD       I       R +    +  +    G       +  
Sbjct: 306 AHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +ID + K +K+  +   F  M    G  PD   +  +++AYG     +K  + Y E
Sbjct: 361 MIDLFSKYRKYTNVGEVFEKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANEVYME 415


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 5/346 (1%)

Query: 117 FTKLMVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   +++G C++ +  S   +F  M   G + +   YT L+     +  +DEA      
Sbjct: 254 FTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVK 313

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK   +C P V TY++LIKS     R      ++ EM   GI+ +  TY  +ID      
Sbjct: 314 MKD-DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           KFE+       M+E G   P++ T N++I+ Y   G IE             +  + +T 
Sbjct: 373 KFEKARELLGQMLEKG-LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTY 431

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y ++ ++  M  V++ M +R   P VVTYN +I+   ++G+ +        M  
Sbjct: 432 NELIKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMND 490

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ P+  TY S++ +  K+  + +   +   +E   V  +   +  +I  Y +AG V++
Sbjct: 491 RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDE 550

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              +   M  ++C+P+++TF  +I    A G  + A  LE KM+ +
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 143/314 (45%), Gaps = 3/314 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           ML D + P++  Y  +V+ Y + G ++EA   ++ +   +   PD +TY+ LI    +  
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE-AGLDPDFFTYTSLIMGYCQRK 267

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             D   K+  EM   G   + V Y  +I G   A++ +E    F  M +   C P + T 
Sbjct: 268 DLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM-KDDECFPTVRTY 326

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             +I +   S    +      E    G+K +I T  +L  S      ++K R ++  M +
Sbjct: 327 TVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           +   P V+TYN +I  + K G IE   +  + M+ R + PN+ TY  L+  Y K+  + K
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +L ++    V+ D   +N +I    ++G+ +    L   M +R  VPD  T+ +MI 
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505

Query: 440 AYNALGMTEAAQNL 453
           +       E A +L
Sbjct: 506 SLCKSKRVEEACDL 519



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 157/343 (45%), Gaps = 3/343 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T L+  L    + E+A  L   ML  GL P+V  Y AL++ Y + G++++A   +  
Sbjct: 359 HTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVEL 418

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+S     P+  TY+ LIK   K +    +  +L +M    +    VTYN++IDG  ++ 
Sbjct: 419 MES-RKLSPNTRTYNELIKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSG 476

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            F+      S M + G   PD +T  SMI +   S  +E+    ++     GV  ++   
Sbjct: 477 NFDSAYRLLSLMNDRGLV-PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y +AG  D+   +++ M  +   P  +T+N +I      G +++     +KM  
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G++P   T   L+    K G      S  +Q+ +S    D   +   I  Y + G +  
Sbjct: 596 IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ++   M+E    PD  T++++I+ Y  LG T  A ++  +M
Sbjct: 656 AEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 155/346 (44%), Gaps = 7/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ K++    K    E+A+     ++  GL P    YT+L+  Y Q   LD AF   N+M
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKA 233
             +  C+ +   Y+ LI       R D    +  +M     EC  +  TY  +I     +
Sbjct: 280 -PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK--DDECFPTVRTYTVLIKSLCGS 336

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           ++  E  +    M E+G   P+I T   +I +  +    EK  +   +    G+  ++ T
Sbjct: 337 ERKSEALNLVKEMEETG-IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L   Y + GM +    V++ M+ R   P   TYN +I+ + K+ ++ K      KM 
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKML 454

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            R + P+ +TY SL+    ++G       +L  + +  ++ D   +  +I +  ++  VE
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +  +LF +++++   P+ + +  +I  Y   G  + A  +  KM++
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 147/345 (42%), Gaps = 32/345 (9%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQ-----QWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           +D   +   +  A ++  L+  +     QW      T+T ++  L K K+ E+A  LF+ 
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQW------TYTSMIDSLCKSKRVEEACDLFDS 522

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           +   G+ P+V +YTAL+  Y ++G +DEA   +  M S  +C P+  T++ LI       
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS-KNCLPNSLTFNALIHGLCADG 581

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +      +  +M  +G++ +  T   +I    K   F+   S F  M+ SG   PD  T 
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGT-KPDAHTY 640

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            + I  Y   G +   E    +    GV  D+ T + L K YG  G  +    V+  M+ 
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700

Query: 320 RFFFPTVVTYNIVIE-----TFGKAGHIEK--------ME-----EYFKKMKHRGMKPNS 361
               P+  T+  +I+      +GK    E         ME     E  +KM    + PN+
Sbjct: 701 TGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNA 760

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNCIISA 405
            +Y  L+    + G +   + +   ++ ++ I  +   FN ++S 
Sbjct: 761 KSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 143/351 (40%), Gaps = 48/351 (13%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           K SV  Y +L++    +G +   F     M    D   D      L +   K  RF+L  
Sbjct: 120 KHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKY 179

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           K++       I C    YNT+++   +    +EM+  +  M+E   C P+I+T N M++ 
Sbjct: 180 KLI-------IGC----YNTLLNSLARFGLVDEMKQVYMEMLEDKVC-PNIYTYNKMVNG 227

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD----------------- 308
           Y   GN+E+  ++ ++    G+  D  T   L   Y +    D                 
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287

Query: 309 ---------------KMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
                          ++   MD    M+    FPTV TY ++I++   +    +     K
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M+  G+KPN  TY  L+ +        K   +L Q+    ++ +   +N +I+ Y + G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +E   ++   M+ R   P+  T+  +I+ Y    + +A   L NKM+  K
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL-NKMLERK 457



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK------ 193
           M  +G+ P +  Y++L+  YG  G  + AF  +  M+  + C+P  +T+  LIK      
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD-TGCEPSQHTFLSLIKHLLEMK 721

Query: 194 ------------SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
                       + +    FD + ++L +M    +  +A +Y  +I G  +       E 
Sbjct: 722 YGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEK 781

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M  + G  P     N+++S         +  K  ++   +G    +++  +L    
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G  ++  SV   + +  ++   + + I+I+  GK G +E   E F  M+  G K +S
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSS 901

Query: 362 ITYCSLVSA 370
            TY  L+  
Sbjct: 902 QTYSLLIEG 910


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  +M   G+  + ++A  +FE M     +PSV  Y A+++   + G   +A      M
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRM 137

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K +    PDVYT++I +KS     R     ++L  M   G E +AV+Y  +I G+ K   
Sbjct: 138 KDIG-IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENC 196

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M++ G C PDI T N +I      GN+++ EK +++    GV  ++ T N
Sbjct: 197 QIEAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I  +   R G  D+   +++ +      P V++YN +I  F K   + + E Y  KM + 
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN  TY ++++ + KAG++   D ILR       I D   ++ +I+     GD+ + 
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F    E+      I + T+++  +  G+   A  L   M+
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMM 418



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 40/373 (10%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G CK  +  +A      M++ G++P+   Y  +++ + ++G++  A   + D     
Sbjct: 292 LICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD-AMFK 350

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD +TYS LI         +    +  E    G + S + YNT++ G  K     + 
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 240 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 265
                 M+E G                                  GC PDIFT N++I  
Sbjct: 411 LQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDG 470

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           Y    N++K  +  +     G+  D+ T N L     +A   D +      M ++   P 
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           ++TYNI+IE+F K   + +  E FK+MK RG+ P+ +T C+L+      G + K   +  
Sbjct: 531 IITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFV 590

Query: 386 QVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            +E        T  FN +I+A+    +V    +LF  M    C PDN T+  MI +Y   
Sbjct: 591 TIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKT 650

Query: 445 GMTEAAQN--LEN 455
           G  + A    LEN
Sbjct: 651 GNIDLAHTFLLEN 663



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 5/331 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ ML  G+ P +  +  L+    + G + E+    + +     C P+++T++I 
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNIF 257

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I+   +    D   ++L  +   G+    ++YNT+I G+ K  K  E E     MV SG 
Sbjct: 258 IQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSG- 316

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+ FT N++I+ +  +G ++  +K   +    G   D  T + L       G  ++  
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +V     ++ F  +++ YN +++   K G + +  +  K M   G  P+  TY  +V+  
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G +   + IL        I D   FN +I  Y +  +++K  E+  TM      PD 
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
           IT+ T++   N L       N+ +   AM E
Sbjct: 497 ITYNTLL---NGLCKARKLDNVVDTFKAMLE 524



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 129/298 (43%), Gaps = 38/298 (12%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G C   +  +A  +F   +  G K S+ +Y  LV    + GL+ +A   + D
Sbjct: 357 FTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKD 416

Query: 175 ----------------------MKSVSD------------CKPDVYTYSILIKSCTKFHR 200
                                 M  +SD            C PD++T++ LI    K   
Sbjct: 417 MMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            D   +IL  M   GI    +TYNT+++G  KA+K + +  +F AM+E  GC P+I T N
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEK-GCTPNIITYN 535

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I ++     + +  + + E    G+  DI TL  L       G  DK   +   ++K 
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 321 FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           + F  +   +NI+I  F    ++   E+ F KM      P++ TY  ++ +Y K G I
Sbjct: 596 YKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNI 653



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 141/350 (40%), Gaps = 44/350 (12%)

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           ++  L+P    + A V  Y    L   A    N +K+    K  + TY  +I+      +
Sbjct: 1   MNRALQPK---HVAAVIRYQNDPL--NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGK 55

Query: 201 FDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
           F+ +E +LAEM    ++   +   Y  I+  YG+  K +E  + F  M +   C P + +
Sbjct: 56  FEAMEDVLAEMRK-NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERM-DFYDCEPSVQS 113

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---GR------------ 303
            N++++     G   +  K Y     +G+  D+ T  I  KS+   GR            
Sbjct: 114 YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 304 ---------------AGMYD-----KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
                          +G Y      +   + D M K+   P ++T+N +I    K G+++
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           + E+ F K+  RG+ PN  T+   +    + G I +   +L  + +  +  D   +N +I
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             + +   + +       M      P+  T+ T+I  +   GM + A  +
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 1/235 (0%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I+  G   KFE ME   + M ++            ++  YG  G +++    +  
Sbjct: 42  TYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFER 101

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            +    +  +Q+ N +       G + +   V   M+    +P V T+ I +++F   G 
Sbjct: 102 MDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGR 161

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                     M  +G + N+++YC+++S + K    ++   +  ++    +  D   FN 
Sbjct: 162 PTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNK 221

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 455
           +I    + G+V++  +LF  + +R   P+  TF   IQ     G + EAA+ LE+
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLES 276



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 3/249 (1%)

Query: 117 FTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G CKQ   ++A  + + MLS G+ P V  Y  L++   ++  LD    T   
Sbjct: 462 FTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKA 521

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M     C P++ TY+ILI+S  K  +     ++  EM   G+    VT  T+I G     
Sbjct: 522 MLE-KGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNG 580

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + ++    F  + +           N MI+A+    N+   EK +++        D  T 
Sbjct: 581 ELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTY 640

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            ++  SY + G  D   + +     +   P+  T   V+        + +       M  
Sbjct: 641 RVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQ 700

Query: 355 RGMKPNSIT 363
            G+ P  + 
Sbjct: 701 NGIVPEEVN 709



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K ++ +     F+ ML  G  P++  Y  L+ ++ +   + EA     +M
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 176 KSVSDCKPDVYTYSILIKS-CTK------FHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
           K+     PD+ T   LI   C+       +  F  IEK   + SY     S   +N +I+
Sbjct: 558 KT-RGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY-KFSY-----STAIFNIMIN 610

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            +         E  F  M  S  C PD +T   MI +Y  +GNI+
Sbjct: 611 AFCXKLNVSMAEKLFHKMGGS-DCAPDNYTYRVMIDSYCKTGNID 654


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 37/352 (10%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TF+ L+  L    +  +A  L + M+  G KP +     LV+    SG   EA 
Sbjct: 252 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 311

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             I+ M     C+P+  TY  ++    K  +  L  ++L +M    I+  AV Y+ IIDG
Sbjct: 312 LLIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 370

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             K                                     G+++     +NE  + G+  
Sbjct: 371 LCK------------------------------------HGSLDNAFNLFNEMEMKGITT 394

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I T NIL   +  AG +D    ++  M KR   P VVT++++I++F K G + + EE  
Sbjct: 395 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 454

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K+M HRG+ P++ITY SL+  + K   + K + ++  + +     +   FN +I+ Y +A
Sbjct: 455 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 514

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             ++   ELF  M  R  V D +T+ T+IQ +  LG    A+ L  +M++ K
Sbjct: 515 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 566



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 151/347 (43%), Gaps = 2/347 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T+  ++ ++ K  Q   A  L   M    +K     Y+ ++    + G LD AF+
Sbjct: 323 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 382

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             N+M+ +     ++ TY+ILI       R+D   K+L +M    I  + VT++ +ID +
Sbjct: 383 LFNEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 441

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  K  E E     M+  G   PD  T  S+I  +    +++K  +  +     G   +
Sbjct: 442 VKEGKLREAEELHKEMIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 500

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I+T NIL   Y +A   D    +   M  R      VTYN +I+ F + G +   +E F+
Sbjct: 501 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 560

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  R + PN +TY  L+      G   K   I  ++E S + LD   +N II     A 
Sbjct: 561 EMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 620

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            V+   +LF ++  +   P   T+  MI      G    A+ L  KM
Sbjct: 621 KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 667



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 160/354 (45%), Gaps = 6/354 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+ +    +       +++ G CK    + A  LF  M   G+  ++  Y  L+  + 
Sbjct: 348 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 407

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G  D+    + DM       P+V T+S+LI S  K  +    E++  EM + GI    
Sbjct: 408 NAGRWDDGAKLLRDMIK-RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 466

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           +TY ++IDG+ K    ++       MV S GC P+I T N +I+ Y  +  I+   + + 
Sbjct: 467 ITYTSLIDGFCKENHLDKANQMVDLMV-SKGCDPNIRTFNILINGYCKANRIDDGLELFR 525

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           + +L GV AD  T N L + +   G  +  + +   M  R   P +VTY I+++     G
Sbjct: 526 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG 585

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             EK  E F+K++   M+ +   Y  ++     A  +     +   +    V      +N
Sbjct: 586 ESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYN 645

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
            +I    + G + +   LF  M+E    PD  T+  +I+A+  LG  +A ++++
Sbjct: 646 IMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH--LGDGDATKSVK 697



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 2/289 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +  +A  L + M+  G+ P    YT+L+  + +   LD+A   ++ M
Sbjct: 433 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 492

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C P++ T++ILI    K +R D   ++  +MS  G+    VTYNT+I G+ +  K
Sbjct: 493 VS-KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 551

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
               +  F  MV S    P+I T   ++    ++G  EK  + + +     ++ DI   N
Sbjct: 552 LNVAKELFQEMV-SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYN 610

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+      A   D    +   +  +   P V TYNI+I    K G + + E  F+KM+  
Sbjct: 611 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 670

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
           G  P+  TY  L+ A+   G   K   ++ +++     +D      +I 
Sbjct: 671 GHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 719



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  LF  M+     P+V  ++ L SA  ++   D   +    M+ +     ++YT 
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME-LKGIAHNLYTL 224

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SI+I    +  +  L    + ++  LG E + +T++T+I+G     +  E       MVE
Sbjct: 225 SIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE 284

Query: 249 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            G   PD+ T+N++++    SG        I+KM ++  + N +        LN++ KS 
Sbjct: 285 MGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP---VLNVMCKSG 340

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
             A   + +R     M++R      V Y+I+I+   K G ++     F +M+ +G+  N 
Sbjct: 341 QTALAMELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 396

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  L+  +  AG       +LR +    +  +   F+ +I ++ + G + +  EL   
Sbjct: 397 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 456

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M  R   PD IT+ ++I  +      + A  + + M++
Sbjct: 457 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 494



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 10/304 (3%)

Query: 161 QSGLLD----EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +SGL+D    +A     DM   S   P V  +S L  +  K  ++DL+  +  +M   GI
Sbjct: 159 RSGLVDIKADDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 217

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEK 274
             +  T + +I+ + + +K   +  +FSAM  +   G  P+  T +++I+     G + +
Sbjct: 218 AHNLYTLSIMINCFCRCRK---LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 274

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             +  +    MG K D+ T+N L      +G   +   ++D M +    P  VTY  V+ 
Sbjct: 275 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 334

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              K+G      E  +KM+ R +K +++ Y  ++    K G +    ++  ++E   +  
Sbjct: 335 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 394

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   +N +I  +  AG  +   +L   M +R   P+ +TF+ +I ++   G    A+ L 
Sbjct: 395 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 454

Query: 455 NKMI 458
            +MI
Sbjct: 455 KEMI 458


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 175/391 (44%), Gaps = 51/391 (13%)

Query: 50  DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW 109
           DL+K L  E  ++  E ++SS  Y  L        L+E +K  K   A+ +F   ++   
Sbjct: 145 DLAKKLIIE--VQGEEARISSFVYNYL--------LNELVKGGKVHEAIFLF---KENLA 191

Query: 110 YQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           + +   T+T  +++ G C+  + E+   LF  M S G  P V  Y  L+S   ++  LD 
Sbjct: 192 FHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDR 251

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A   + +++S +DC PDV TY+ +I    K  + +    +  EM   GIE + VT+N +I
Sbjct: 252 ACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLI 311

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           DG+GK       E+    M  S  C PD+ T  S+I  Y  +G+I            +G+
Sbjct: 312 DGFGKIGNMVAAEAMHEKMA-SYSCIPDVVTFTSLIDGYCRTGDIR-----------LGL 359

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           K                        V D M+ R   P + TY+++I    K   I +  +
Sbjct: 360 K------------------------VWDVMKARNVSPNIYTYSVIINALCKDNRIHEARD 395

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             +++K   + P    Y  ++  + KAG + + + I+ ++E      D   F  +I  + 
Sbjct: 396 LLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHC 455

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             G + +  ++F  M    C PDNIT ++++
Sbjct: 456 MKGRMVEALDIFKKMLAIGCAPDNITISSLV 486



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 1/310 (0%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           VY  L++   + G + EA     +  +     P+ +T++ILI+   +    +   ++   
Sbjct: 165 VYNYLLNELVKGGKVHEAIFLFKENLAFHS-PPNTWTFNILIRGLCRVGEVEKGFELFNA 223

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G     VTYNT+I G  KA + +        +     C PD+ T  S+IS +   G
Sbjct: 224 MQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLG 283

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E     + E    G++  + T N+L   +G+ G      ++ + M      P VVT+ 
Sbjct: 284 KLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFT 343

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+ + + G I    + +  MK R + PN  TY  +++A  K   I +   +LRQ++ S
Sbjct: 344 SLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCS 403

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           DV      +N +I  + +AG+V++   +   M+E+ C PD +TF  +I  +   G    A
Sbjct: 404 DVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEA 463

Query: 451 QNLENKMIAM 460
            ++  KM+A+
Sbjct: 464 LDIFKKMLAI 473



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 36/204 (17%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--------------------------FFF 323
           D + L  L  S+ +AG +D  + ++  +Q                            F F
Sbjct: 127 DSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLF 186

Query: 324 ---------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
                    P   T+NI+I    + G +EK  E F  M+  G  P+ +TY +L+S   KA
Sbjct: 187 KENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKA 246

Query: 375 GLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
             + +   +L++V++ +D   D   +  IIS + + G +E    LF  M      P  +T
Sbjct: 247 NELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVT 306

Query: 434 FATMIQAYNALGMTEAAQNLENKM 457
           F  +I  +  +G   AA+ +  KM
Sbjct: 307 FNVLIDGFGKIGNMVAAEAMHEKM 330


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 157/360 (43%), Gaps = 10/360 (2%)

Query: 102 GLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG------LKPSVDVYT 153
           GLLR+  +  Y+    T+  L+  L        A  L E ML+        +KP++  Y 
Sbjct: 183 GLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYC 242

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            ++ +  + GL+D+      +MK      PDV  YS +I       R++  + +  EM  
Sbjct: 243 TIIDSLCKDGLIDKGKELFLEMKG-RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVD 301

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G+  + VT+N +ID   KA K EE       M++ G   PD FT N++I  +   G I+
Sbjct: 302 EGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPDTFTYNTLIDGFCLEGRID 360

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                +      G++ D  + N+L   Y ++G   + + +   M  +   PTV+TYN ++
Sbjct: 361 DARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLL 420

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
               + G +      F +MK   + P S TY  L+    K   + +   +   +EN D  
Sbjct: 421 TGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQ 480

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                FNC+I    +A  +E   ELF  +      P+ IT+  MI      G  E A++L
Sbjct: 481 PSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDL 540



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 8/312 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  LF  M+ +G+ P+V  +  L+ A  ++G ++EA   +  M    +  PD +TY+ 
Sbjct: 290 EGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPDTFTYNT 348

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI       R D    +   M   GIE  AV+YN +I+GY K+ +  E +  +  M+   
Sbjct: 349 LIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMM--- 405

Query: 251 GCH---PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            C    P + T N++++     G +      + E  +  +  +  T NIL     +    
Sbjct: 406 -CKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHL 464

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +   +  +++   F P++  +N +I+   KA  IE   E F ++ H G++PN ITY  +
Sbjct: 465 SEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVM 524

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +    K+G +     +   +E      +   FN ++  + Q  +++K+ EL   M E+  
Sbjct: 525 IHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDF 584

Query: 428 VPDNITFATMIQ 439
            PD  T + ++ 
Sbjct: 585 SPDASTISIVVD 596



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 151/353 (42%), Gaps = 16/353 (4%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            +F  L+  + K K+      L++ M   GL P       L++ Y     +D   + + +
Sbjct: 93  SSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGE 152

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--- 231
           M       P+  T++ L+K      R      +L +M  +G   + VTY T+++G     
Sbjct: 153 MLRRGH-SPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTG 211

Query: 232 ----KAKKFEEM---ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
                 K  EEM      F   ++     P++    ++I +    G I+K ++ + E   
Sbjct: 212 NTMLAVKLHEEMLNGNGGFGVTIK-----PNLVCYCTIIDSLCKDGLIDKGKELFLEMKG 266

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+  D+   + +       G ++  + + + M      P VVT+N++I+   KAG +E+
Sbjct: 267 RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                K M  RG  P++ TY +L+  +   G I     +   +E+  +  D   +N +I+
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            Y ++G + +  +L+  M  +  +P  IT+ T++      G    A NL  +M
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 154/357 (43%), Gaps = 13/357 (3%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           + + + F K     G  K+ E  S+ F  ++     P +  +  L+ A  +   +   F 
Sbjct: 55  RGQLENFLKSNCKSGHIKRSEAFSV-FNHLIDMQPTPPISSFNTLLGAVAK---IKRYFD 110

Query: 171 TINDMKSVS--DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
            I+  K +S     PD  T +ILI      ++ D    +L EM   G   + VT+ +++ 
Sbjct: 111 VISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVK 170

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN----IEKMEKWYNEFNL 284
           G     +  E       MV  G   P++ T  ++++    +GN    ++  E+  N    
Sbjct: 171 GLCLGSRISEATGLLRKMVRMG-YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGG 229

Query: 285 MGV--KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
            GV  K ++     +  S  + G+ DK + +   M+ R   P VV Y+ +I      G  
Sbjct: 230 FGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRW 289

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E  +  F +M   G+ PN +T+  L+ A  KAG + + + +L+ +       DT  +N +
Sbjct: 290 EGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTL 349

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           I  +   G ++   +LF++M+ +    D +++  +I  Y   G    A+ L  +M+ 
Sbjct: 350 IDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMC 406



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK     +A  L+  M+   + P+V  Y  L++   + G + +A++   +MK V D  
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMK-VHDLT 445

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+  TY+IL+    K +      ++   +     + S   +N +IDG  KA+K E     
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+ +   G   P++ T   MI     SG +E  +  +      G   ++ T N L + + 
Sbjct: 506 FNRLSHEG-LEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +     K+  ++  M ++ F P   T +IV++   K    EK  EY 
Sbjct: 565 QNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKD---EKYREYL 608



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 7/248 (2%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           ++NT++    K K++ ++ S +  M    G  PD  TLN +I+ Y N   ++       E
Sbjct: 94  SFNTLLGAVAKIKRYFDVISLYKRM-SLIGLAPDFITLNILINCYCNLNKVDFGLAVLGE 152

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G   +  T   L K         +   ++  M +  + P VVTY  ++      G+
Sbjct: 153 MLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGN 212

Query: 342 ----IEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
               ++  EE        G  +KPN + YC+++ +  K GLI K   +  +++   +  D
Sbjct: 213 TMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPD 272

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              ++ II      G  E    LF  M +    P+ +TF  +I A    G  E A +L  
Sbjct: 273 VVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLK 332

Query: 456 KMIAMKEN 463
            MI   E+
Sbjct: 333 LMIQRGES 340


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 5/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L    +  +A  L + ML  G +PSV  YT L+ A  +S    +A   +++M
Sbjct: 178 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 237

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P++ TY+++I    +  R D   + L  +S  G +   V+Y T++ G   AK+
Sbjct: 238 RA-KGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 296

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E++E  F+ M+E   C P+  T + ++  +   G +E+  +   + +  G  A+    N
Sbjct: 297 WEDVEELFAEMMEKN-CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN 355

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +  + G  D     ++ M      P  ++Y  V++   +A   E  +E  K+M  +
Sbjct: 356 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 415

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN +T+ + +    + GLI +   ++ Q+      ++   +N +++ +   G V+  
Sbjct: 416 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 475

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF +M    C P+ IT+ T++         +AA  L  +M+
Sbjct: 476 LELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEML 515



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L +   S G  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTL 150

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +    ++ + D   +++A M    +   A TY  II G     +  E  S    M+  G 
Sbjct: 151 VAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG- 206

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P + T   ++ A   S    +  +  +E    G   +I T N++     R G  D  R
Sbjct: 207 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 266

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             ++ +    F P  V+Y  V++    A   E +EE F +M  +   PN +T+  LV  +
Sbjct: 267 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 326

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G++ +   +L Q+       +T   N +I+   + G V+   +    M    C PD 
Sbjct: 327 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 386

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           I++ T+++        E A+ L  +M+
Sbjct: 387 ISYTTVLKGLCRAERWEDAKELLKEMV 413



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 146/341 (42%), Gaps = 7/341 (2%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           TKL+  L +  +   A+ +       G    V  Y  LV+ Y + G LD A   I  M  
Sbjct: 113 TKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV 172

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                PD YTY+ +I+      R      +L +M + G + S VTY  +++   K+  F 
Sbjct: 173 A----PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG 228

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +       M  + GC P+I T N +I+     G ++   ++ N  +  G + D  +   +
Sbjct: 229 QAMEVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTV 287

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K    A  ++ +  +   M ++   P  VT+++++  F + G +E+  +  ++M   G 
Sbjct: 288 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 347

Query: 358 KPNSITYCSLV-SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             N+ T C++V +   K G +      L  + +     DT  +  ++    +A   E   
Sbjct: 348 AANT-TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 406

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           EL   M  ++C P+ +TF T I      G+ E A  L  +M
Sbjct: 407 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 447



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 130/306 (42%), Gaps = 19/306 (6%)

Query: 102 GLLRQQQWYQAR----------CQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R ++W  A+          C     TF   + +L +    EQA++L E M   G + 
Sbjct: 395 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV 454

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           ++  Y ALV+ +   G +D A      M     CKP+  TY+ L+       R D   ++
Sbjct: 455 NIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTTLLTGLCNAERLDAAAEL 510

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           LAEM       + VT+N ++  + +    +E       M+E G C P++ T N+++    
Sbjct: 511 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGIT 569

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              N E+  +  +     GV  DI T + +     R    ++   +   +Q     P  V
Sbjct: 570 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAV 629

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            YN ++    K  + +   ++F  M   G  PN +TY +L+   +    + +   +LR++
Sbjct: 630 IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 689

Query: 388 ENSDVI 393
            +  V+
Sbjct: 690 CSRGVL 695



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 165/384 (42%), Gaps = 41/384 (10%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K+W+   ++F  + ++        TF  L+    +    E+A  + E M   G   +  +
Sbjct: 295 KRWEDVEELFAEMMEKNCMPNE-VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 353

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--------- 202
              +++   + G +D+AF  +N+M S   C PD  +Y+ ++K   +  R++         
Sbjct: 354 CNIVINTICKQGRVDDAFQFLNNMGSYG-CSPDTISYTTVLKGLCRAERWEDAKELLKEM 412

Query: 203 -----------------------LIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                                  LIE+   ++ +MS  G E + VTYN +++G+    + 
Sbjct: 413 VRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRV 472

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F +M     C P+  T  ++++   N+  ++   +   E        ++ T N+
Sbjct: 473 DSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 528

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G+ D+   +++ M +    P ++TYN +++   K  + E+  E    +   G
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ +TY S++   S+   + +   +   V++  +      +N I+ A  +  + +   
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           + F  M    C+P+ +T+ T+I+ 
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEG 672


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEE--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI    V YN++I+ +GKAK F E  +  S M  +G            
Sbjct: 62  RAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M+ RG++PN+ITY +++S + K G + +   + +++  S + +D   +  +I AY +
Sbjct: 242 IQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLQELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/343 (19%), Positives = 132/343 (38%), Gaps = 74/343 (21%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  ++ + GK K   +A  L   M + G+ P    Y  L++ Y ++    EA S  ++M
Sbjct: 81  AYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEM 140

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +  C  D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ 
Sbjct: 141 REIQ-CSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAEL 199

Query: 236 FEEMESSFSAM----------------------------------VESGGCHPDIFTLNS 261
           F E    F  M                                  ++  G  P+  T ++
Sbjct: 200 FGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYST 259

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS +G  G +++    + +    G++ D      +  +Y RAG+    + ++  +++  
Sbjct: 260 IISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKR-- 317

Query: 322 FFPTVVTYNIVIETFGKAGHIEK-----------------------------------ME 346
             P  +  +  I     AG IE+                                   + 
Sbjct: 318 --PDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVV 375

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           E F KM+  G  P+S     +++AY K     K +S+  ++++
Sbjct: 376 EVFDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQD 418



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQ--WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ +K+  AL +F  +R+ Q  +    C     +   LG  K+ ++   LF  M   G++
Sbjct: 125 VENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADK---LFWSMRKMGIE 181

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMVIYGKTLEHEKANN 240

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +A+TY+TII  +GK  K       F+++  S        +  M+   E
Sbjct: 241 LIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYE 300

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 301 RAGLVAHAKRLLQELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFER 360

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   + +   Y  +  V D M+   +FP      +V+  +GK    +K    + +M+  G
Sbjct: 361 MINLFSKHKKYPNVVEVFDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQDEG 420



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KMEE                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G+ P+ + Y S+++ + KA L  +  +++ ++  + V+ DT  +  +
Sbjct: 61  SRAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   LF  M+E  C  D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 35/331 (10%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S +SK G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           G V     L   +K    +P +I    ++ A
Sbjct: 303 GLVAHAKRLLHELKRPDNIPRDIAIHILVGA 333



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PDI   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  ++ +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKL 280



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 160/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   + + G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWSKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + KAG +     + K++ H   +P++I     +     AG I +   + RQ  ++  + 
Sbjct: 298 AYEKAGLVA----HAKRLLHELKRPDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M      PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 119/301 (39%), Gaps = 38/301 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 181

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++ EM   GIE +++TY+TII  + K  K +     F  +  S G   D     +MI AY
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKL-RSSGVDIDQVLYQTMIVAY 299

Query: 267 GNSGNIEKMEKWYNEFN-------------LMGVKA------------------DIQTLN 295
             +G +   ++  +E               L+G                     DI    
Sbjct: 300 EKAGLVAHAKRLLHELKRPDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   + +   Y  +  V D M    +FP      +++  +GK    +K  + + +M+  
Sbjct: 360 RMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEV 419

Query: 356 G 356
           G
Sbjct: 420 G 420



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 165/359 (45%), Gaps = 4/359 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+ + +  R       M++   CK    ++A  L+  M+  G+ P V  Y+ LVS + 
Sbjct: 185 LLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFC 244

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
             G L+ A   +N+M  + +  PD+YTY+IL+ +  K  +    E +LA M    +    
Sbjct: 245 IVGQLNRAIDLLNEM-VLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDV 303

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           V Y+T++DGY    +    +  F  M + G   PD+   + MI+       +++    + 
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMG-VTPDVHCYSIMINGLCKIKRVDEALNLFE 362

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E +   +  D  T   L     ++G    +  + D M  R   P V+TYN +I+   K G
Sbjct: 363 EIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNG 422

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           H+++    F KMK + ++PN  T+  L+    K G +       + +      L+   + 
Sbjct: 423 HLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYT 482

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I+   + G +++   L   M++  C+ D +TF  MI+A+      + A+ L  +MIA
Sbjct: 483 VMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIA 541



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 4/238 (1%)

Query: 122 VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +M G C   +   A  +F  M   G+ P V  Y+ +++   +   +DEA +   ++    
Sbjct: 309 LMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ-K 367

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +  PD  TY+ LI    K  R   +  +  EM   G     +TYN +ID   K    +  
Sbjct: 368 NMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRA 427

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
            + F+ M +     P+++T   ++      G ++   +++ +    G   +++T  ++  
Sbjct: 428 IALFNKM-KDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMIN 486

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
              + G+ D+  ++   M+        VT+ I+I  F      +K E+  ++M  RG+
Sbjct: 487 GLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 132/298 (44%), Gaps = 8/298 (2%)

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           D+A S  N M  V    P  + ++ ++ S     R+     +  +M    +E    T N 
Sbjct: 40  DDAVSQFNHMFHVHP-TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNI 98

Query: 226 IIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           II+ +     F ++  +FS +  +   G  P+  TLN+++      G +++  +++++  
Sbjct: 99  IINCFCH---FGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVL 155

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G +    +  IL     + G       ++  +++    P VV Y+++I+   K   ++
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +  + + +M  +G+ P+ +TY  LVS +   G + +   +L ++   ++  D   +  ++
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILV 275

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            A  + G V K  E  L +  + CV  D + ++T++  Y  +     A+ +   M  M
Sbjct: 276 DALCKEGKV-KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM 332


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 124  LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
            L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 880  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 938

Query: 184  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
            DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 939  DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 998

Query: 244  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
              MV S  C PD+ T N++I  +     +E+  + + E +  G+  +  T NIL +   +
Sbjct: 999  EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057

Query: 304  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            AG  D  + +   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 1058 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 1117

Query: 364  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
            Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  MK
Sbjct: 1118 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 1177

Query: 424  ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            E   +P++  + T+I+A    G  EA+  L  +M
Sbjct: 1178 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 1211



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 160/344 (46%), Gaps = 2/344 (0%)

Query: 110  YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
            YQ    TF  L+  L    +  +A  L + M++ G +P +  Y  +V+   + G  D AF
Sbjct: 796  YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 855

Query: 170  STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
            + +N M+     +P V  Y+ +I    K+   D    +  EM   GI  + VTY+++I  
Sbjct: 856  NLLNKMEQ-GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 230  YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                 ++ +     S M+E    +PD+FT +++I A+   G + + EK Y+E     +  
Sbjct: 915  LCNYGRWSDASRLLSDMIERK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 973

Query: 290  DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
             I T + L   +      D+ + + +FM  +  FP VVTYN +I+ F K   +E+  E F
Sbjct: 974  SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 1033

Query: 350  KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            ++M  RG+  N++TY  L+    +AG       I +++ +  V  +   +N ++    + 
Sbjct: 1034 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 1093

Query: 410  GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            G +EK   +F  ++     P   T+  MI+     G  E   +L
Sbjct: 1094 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 1137



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 166/338 (49%), Gaps = 11/338 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K K+   A   F  + +++  +    T+T L+  L    +   A+ L   M+   
Sbjct: 300 IDSLCKTKRVNDAFDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+V  Y+AL+ A+ ++G + EA     +M  +S   PD+ TYS LI       R D  
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEA 417

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G     V+YNT+I+G+ KAK+ E+    F  M + G    +  T N++I 
Sbjct: 418 NQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG-LVSNTVTYNTLIQ 476

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  +G+++K ++++++ +  G+  DI T NIL       G  +K   + + MQKR    
Sbjct: 477 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 536

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +VTY  VI    K G +E+    F  +  +G+KP+ +TY +++S     GL+ +V+++ 
Sbjct: 537 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 596

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +++   ++ +    +C +S     GD+    EL   M
Sbjct: 597 TKMKQEGLMKN----DCTLS----DGDITLSAELIKKM 626



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 167/362 (46%), Gaps = 3/362 (0%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           LAL I G + +  +   R  T   L+    +  +   A  L + M+  G KP +  Y A+
Sbjct: 241 LALSILGKMLKLGYEPDRV-TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI 299

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + +  ++  +++AF    +++     +P+V TY+ L+       R+    ++L++M    
Sbjct: 300 IDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           I  + +TY+ ++D + K  K  E +  F  MV      PDI T +S+I+       I++ 
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEA 417

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + ++     G  AD+ + N L   + +A   +    +   M +R      VTYN +I+ 
Sbjct: 418 NQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQG 477

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           F +AG ++K +E+F +M   G+ P+  TY  L+      G + K   I   ++  ++ LD
Sbjct: 478 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 537

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +  +I    + G VE+   LF ++  +   PD +T+ TM+      G+    + L  
Sbjct: 538 IVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYT 597

Query: 456 KM 457
           KM
Sbjct: 598 KM 599



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 157/338 (46%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++     C Q   A  +   ML  G +P      +LV+ + +   + +A S ++ M
Sbjct: 225 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 284

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   KPD+  Y+ +I S  K  R +       E+   GI  + VTY  +++G   + +
Sbjct: 285 VEIG-YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 343

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           + +     S M++     P++ T ++++ A+  +G + + ++ + E   M +  DI T +
Sbjct: 344 WSDAARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 402

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L          D+   + D M  +     VV+YN +I  F KA  +E   + F++M  R
Sbjct: 403 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 462

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N++TY +L+  + +AG + K      Q++   +  D   +N ++      G++EK 
Sbjct: 463 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 522

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +F  M++R    D +T+ T+I+     G  E A +L
Sbjct: 523 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 560



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 159/330 (48%), Gaps = 10/330 (3%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+     +  ++  L K K+   A   F+ +   G++P+V  YTALV+    S    +A 
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348

Query: 170 STINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
             ++DM  K ++   P+V TYS L+ +  K  +    +++  EM  + I+   VTY+++I
Sbjct: 349 RLLSDMIKKKIT---PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 405

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +G     + +E    F  MV S GC  D+ + N++I+ +  +  +E   K + E +  G+
Sbjct: 406 NGLCLHDRIDEANQMFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 464

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKM 345
            ++  T N L + + +AG  DK +    F Q  FF   P + TYNI++      G +EK 
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQEF--FSQMDFFGISPDIWTYNILLGGLCDNGELEKA 522

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              F+ M+ R M  + +TY +++    K G + +  S+   +    +  D   +  ++S 
Sbjct: 523 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 582

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFA 435
               G + ++  L+  MK+   + ++ T +
Sbjct: 583 LCTKGLLHEVEALYTKMKQEGLMKNDCTLS 612



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 38/370 (10%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            ++ +  LAL + G +  +  Y+    T + L+      K+  +A  L + M   G +P+ 
Sbjct: 742  RRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNT 800

Query: 150  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
              +  L+          EA + I+ M +   C+PD+ TY +++    K    DL   +L 
Sbjct: 801  VTFNTLIHGLFLHNKASEAMALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 859

Query: 210  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            +M    +E   + YNTIIDG  K K  ++  + F  M E+ G  P++ T +S+IS   N 
Sbjct: 860  KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNY 918

Query: 270  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
            G      +W                             D  R + D ++++   P V T+
Sbjct: 919  G------RWS----------------------------DASRLLSDMIERKIN-PDVFTF 943

Query: 330  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            + +I+ F K G + + E+ + +M  R + P+ +TY SL++ +     + +   +   + +
Sbjct: 944  SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 1003

Query: 390  SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                 D   +N +I  + +   VE+  E+F  M +R  V + +T+  +IQ     G  + 
Sbjct: 1004 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 1063

Query: 450  AQNLENKMIA 459
            AQ +  +M++
Sbjct: 1064 AQEIFKEMVS 1073



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 141/328 (42%), Gaps = 37/328 (11%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L++A    +DM   S   P +  ++ L+ +  K  ++D++  +  +M  LGI     T+N
Sbjct: 169 LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 225 TII-----------------------------------DGYGKAKKFEEMESSFSAMVES 249
            +I                                   +G+ +  +  +  S    MVE 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  PDI   N++I +   +  +     ++ E    G++ ++ T   L      +  +  
Sbjct: 288 -GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 346

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              ++  M K+   P V+TY+ +++ F K G + + +E F++M    + P+ +TY SL++
Sbjct: 347 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 406

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
                  I + + +   + +   + D   +N +I+ + +A  VE   +LF  M +R  V 
Sbjct: 407 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 466

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           + +T+ T+IQ +   G  + AQ   ++M
Sbjct: 467 NTVTYNTLIQGFFQAGDVDKAQEFFSQM 494



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 35/282 (12%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            TF+ L+    K  +  +A  L++ M+   + PS+  Y++L++ +     LDEA      M
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 1001

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             S   C PDV TY+ LIK   K+ R +   ++  EMS  G+  + VTYN +I G  +A  
Sbjct: 1002 VS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 1060

Query: 236  FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
             +  +  F  MV  G                                     P I+T N 
Sbjct: 1061 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 1120

Query: 262  MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
            MI     +G +E     +   +L GVK D+   N +   + R G  ++  ++   M++  
Sbjct: 1121 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 1180

Query: 322  FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              P    YN +I    + G  E   E  K+M+  G   ++ T
Sbjct: 1181 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 1222



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K KK++ +  S    +E  G   D++T N +I+ +     +      
Sbjct: 187 SIVDFNRLLSAIVKLKKYDVV-ISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + D  T+  L   + R        S++D M +  + P +V YN +I++  K
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              +    ++FK+++ +G++PN +TY +LV+    +        +L  +    +  +   
Sbjct: 306 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 365

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++ ++ A+ + G V +  ELF  M      PD +T++++I         + A  + + M+
Sbjct: 366 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 425

Query: 459 A 459
           +
Sbjct: 426 S 426



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 157/378 (41%), Gaps = 35/378 (9%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           Q  ++      +T  +++ G C   + E+A ++FE M    +   +  YT ++    ++G
Sbjct: 493 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 552

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTK--FHRFDLIEKILAEMSYLGIECSA 220
            ++EA+S    + S+   KPD+ TY+ ++   CTK   H  + +   + +   +  +C+ 
Sbjct: 553 KVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 611

Query: 221 VTYNTIIDGYGKAKKFEEMES-----SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              +  +     A+  ++M S     S    ++SG C   +    S++ A+    + +  
Sbjct: 612 SDGDITL----SAELIKKMLSCGYAPSLLKDIKSGVCKKAL----SLLRAFSGKTSYDYR 663

Query: 276 EKW----YNEFNLMGVKA------------DIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           EK      +E  L    A             I   + L  +  +   +D + S+ + MQ 
Sbjct: 664 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 723

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                   TY+I+I  F +   +        KM   G +PN +T  SL++ Y  +  I +
Sbjct: 724 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 783

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +++ Q+  +    +T  FN +I          +   L   M  + C PD +T+  ++ 
Sbjct: 784 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 843

Query: 440 AYNALGMTEAAQNLENKM 457
                G T+ A NL NKM
Sbjct: 844 GLCKRGDTDLAFNLLNKM 861


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 162/342 (47%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+ + G+     + S +F+ M   G  P  D +  L+S+Y + G  D+A +    M
Sbjct: 176 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 235

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+ +Y+ ++ +  +   +   EK+LAEM     + + +TY +++  Y   K+
Sbjct: 236 LEAG-VNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKE 294

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E M  + +  + SG   P    L +++        + + E+ + E    G   DI TLN
Sbjct: 295 IERM-CALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLN 353

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YGR  M  K   ++D M++  F P++ TYN ++  + ++ + E+ EE  +++  +
Sbjct: 354 AMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAK 413

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+ I+Y +++ AY + G +     +L ++  S    D   +N  I++Y       + 
Sbjct: 414 GIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEA 473

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++   M +  C P+  T+ +++  Y  L   + A    N +
Sbjct: 474 IDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 515



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 128/276 (46%), Gaps = 1/276 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           KPDV+TY+ L+    K  +     +I  EM   G + +  T+N +I  +G   KF EM  
Sbjct: 101 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 160

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F   +++  C PDI T N+++S +G +G   ++   + E    G   +  T N L  SY
Sbjct: 161 VFED-IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSY 219

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R G +D+  +V   M +    P + +YN V+    + G  ++ E+   +MK    KPN 
Sbjct: 220 SRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNE 279

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TYCSL+ AY+    I ++ ++  ++ +  +         ++    +   + +    FL 
Sbjct: 280 LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLE 339

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +++R   PD  T   M+  Y    M   A  + + M
Sbjct: 340 LRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCM 375



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 2/330 (0%)

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
           P  A  L   M+  G+KP V  YT L+S + ++G    A     +M++   CKP++ T++
Sbjct: 85  PPDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRN-EGCKPNICTFN 143

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            LIK      +F  + K+  ++         VT+NT++  +G+     E+   F  M  +
Sbjct: 144 ALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRA 203

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
           G   P+  T N++IS+Y   G+ ++    Y      GV  D+ + N +  +  R G++ +
Sbjct: 204 GFV-PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQ 262

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              V+  M+     P  +TY  ++  +     IE+M    +++    ++P ++   +LV 
Sbjct: 263 SEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVL 322

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
             SK  L+M+ +    ++       D    N ++S YG+   V K  E+   MK     P
Sbjct: 323 VNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTP 382

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKMIA 459
              T+ +++  Y+     E ++ +  +++A
Sbjct: 383 SLTTYNSLMYMYSRSANFERSEEILREILA 412



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 110/264 (41%), Gaps = 11/264 (4%)

Query: 94  WQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           W+ + K+   ++       RC+    T+  L+      K+ E+   L E + S  ++P  
Sbjct: 260 WKQSEKVLAEMKD-----GRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRA 314

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +   LV    +  LL E      +++      PD+ T + ++    +        +IL 
Sbjct: 315 VLLKTLVLVNSKCDLLMETERAFLELRQ-RGFSPDITTLNAMVSIYGRRQMVAKANEILD 373

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G   S  TYN+++  Y ++  FE  E     ++ + G  PDI + N++I AY  +
Sbjct: 374 CMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREIL-AKGIRPDIISYNTVIYAYCRN 432

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +    +  +E    G   DI T N    SY    M+ +   V+ +M K    P   TY
Sbjct: 433 GRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTY 492

Query: 330 NIVIETFGKAGHIEKMEEYFKKMK 353
           N +++ + K    ++   +   ++
Sbjct: 493 NSIVDWYCKLNRRDEASMFVNNLR 516


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 164/346 (47%), Gaps = 2/346 (0%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
            LAL +F   R +  Y +   +F+ ++   G+  +   A  LF  M S G+ P+V  Y +
Sbjct: 230 NLALGLFERARLEG-YGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNS 288

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++ A  +  +  +      D    +   PD  TY+ L+  C     +++ +K+L+EM + 
Sbjct: 289 IIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHR 348

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I     TYNT +D   KA + +     F  M  S    P++ T ++M+  Y  +  +E 
Sbjct: 349 CIVPDVFTYNTYLDTLCKAGQIDLARRVFEEM-SSKRVWPNVVTYSAMMDGYAKANLLED 407

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               Y E  L  V  D  + N L   Y + G  D+       M++      VVTYN ++ 
Sbjct: 408 ALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLS 467

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +GK G  +++   F++MK R + PN++TY +++  Y+K  +  +   + R+ + + + +
Sbjct: 468 GYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEI 527

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D  F++ II    + G +E    L + M E+   P+ +TF ++I A
Sbjct: 528 DVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSIIDA 573



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 161/332 (48%), Gaps = 3/332 (0%)

Query: 124 LGKCKQPEQASLLFEVMLS--DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
            G  +    A   F+ ++S  +G      + +A++   G+ G ++ A       + +   
Sbjct: 186 FGNTRSLLHAKKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERAR-LEGY 244

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
              V+++S +I +  +  RF     +   MS  G+  + +TYN+IID   K +   ++  
Sbjct: 245 GSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVV 304

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F   + + G  PD  T NS++S   + G  E  +K  +E +   +  D+ T N    + 
Sbjct: 305 KFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTL 364

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            +AG  D  R V + M  +  +P VVTY+ +++ + KA  +E     +++MK R +  + 
Sbjct: 365 CKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDR 424

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ++Y +LV  Y K G + +     +++E S +  D   +N ++S YG+ G  +++  LF  
Sbjct: 425 VSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEE 484

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           MK R+  P+ +T++TMI  Y    M + A ++
Sbjct: 485 MKARNIYPNTLTYSTMIDMYTKGEMFQEAMDV 516



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 139/278 (50%), Gaps = 2/278 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
            ++ M+++GL P    Y +L+S     G+ + A   +++M       PDV+TY+  + + 
Sbjct: 306 FYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRC-IVPDVFTYNTYLDTL 364

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  + DL  ++  EMS   +  + VTY+ ++DGY KA   E+  + +  M     C  D
Sbjct: 365 CKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVC-LD 423

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             + N+++  Y   GN+++  +   E    G+  D+ T N L   YG+ GMYD++R + +
Sbjct: 424 RVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFE 483

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R  +P  +TY+ +I+ + K    ++  + +++ K   ++ + + Y +++    K G
Sbjct: 484 EMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNG 543

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           L+     +L  +    +  +   FN II A  Q+  +E
Sbjct: 544 LMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE 581



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 150/368 (40%), Gaps = 83/368 (22%)

Query: 94  WQLALKIFGLLRQQQWYQARCQ-----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           W++A K+   +        RC      T+   +  L K  Q + A  +FE M S  + P+
Sbjct: 335 WEMAQKLLSEMDH------RCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPN 388

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  Y+A++  Y ++ LL++A +   +MK  S C  D  +Y+ L+    K    D   +  
Sbjct: 389 VVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCL-DRVSYNTLVGIYEKLGNLDEAIEKC 447

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM   GI    VTYN ++ GYGK   ++E+   F  M ++   +P+  T ++MI  Y  
Sbjct: 448 KEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEM-KARNIYPNTLTYSTMIDMYTK 506

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
               ++    Y EF +  ++ D+   + +  +  + G+ +    ++  M ++   P VVT
Sbjct: 507 GEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVT 566

Query: 329 YNIVIET--------FG------------------------------------------- 337
           +N +I+         +G                                           
Sbjct: 567 FNSIIDASQQSPTLEYGVNGSSDAIDYPIEQSSPIVIDGAFQNKPGEDRILKMFEQLAAE 626

Query: 338 KAGHIEKMEE----------YFKKMKHRGMKPNSITY------CSLVSAYSKAGLIMKVD 381
           KAGH++K              F+KM    +KPN +T+      CSL ++Y  A L++   
Sbjct: 627 KAGHLKKNRSGRQDKHCILWLFQKMHELNIKPNVVTFSAILNACSLCNSYEDASLLLDT- 685

Query: 382 SILRQVEN 389
             LR  +N
Sbjct: 686 --LRLFDN 691


>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 367

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 9/331 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T ++ +LG+     QA  LF+ MLS G++  +  + +++ AY + GL  +A+    D
Sbjct: 11  HTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYED 70

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNT---IIDGY 230
           M   S  + D  T S L+    K     +  EKI +++   GI     TYNT   ++   
Sbjct: 71  MVE-SGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRG 129

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           G  ++ +E+E     +       P+I T N+++  +   G +++  + Y      G+K  
Sbjct: 130 GHTERCKELEIEMQRLE----VVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPT 185

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T   L + Y RA  + +   V   M++    P ++ Y+++I  +GKAG  E+    F+
Sbjct: 186 VVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFR 245

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           ++++ G  PN +T+C L+ A+   G + ++ +   ++  S  + D   +N ++ AYG+ G
Sbjct: 246 QLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYG 305

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +   LF  M+ +   P+ +++ TMIQAY
Sbjct: 306 HSVQAAILFRRMQAQGISPNAVSYDTMIQAY 336



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 3/316 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LKP+   YT ++   G++GL  +A    ++M S S  +  +++++ +I +  +   F   
Sbjct: 6   LKPNGHTYTLVLGVLGRAGLTIQARELFDEMLS-SGVEVGLHSFNSMIGAYARKGLFKKA 64

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            ++  +M   GI+   +T +T++ G GK +   E  E  FS + E+G   P + T N+++
Sbjct: 65  WRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENG-ILPRVETYNTLL 123

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S     G+ E+ ++   E   + V  +I T N L   + + G   +   V   +      
Sbjct: 124 SVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLK 183

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PTVVTY  +++ + +A   ++  E F +M+  G KP+ + Y  ++S Y KAG   +   +
Sbjct: 184 PTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALV 243

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            RQ++N   I +   + C+I A+G  G ++++G  F  M    C+PD   +  M+ AY  
Sbjct: 244 FRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGR 303

Query: 444 LGMTEAAQNLENKMIA 459
            G +  A  L  +M A
Sbjct: 304 YGHSVQAAILFRRMQA 319



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 138/286 (48%), Gaps = 13/286 (4%)

Query: 111 QARCQTFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           QA   T + L+  +GK + P E A  +F  +  +G+ P V+ Y  L+S   + G  +   
Sbjct: 77  QADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCK 136

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
               +M+ + +  P++ T++ L+    +  R     ++   +   G++ + VTY  ++  
Sbjct: 137 ELEIEMQRL-EVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQM 195

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y +A K +E    F  M   G C PD+   + MIS YG +G+ E+    + +    G   
Sbjct: 196 YCRASKHKEAIEVFLEMRRVG-CKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIP 254

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ T   L +++G  G   ++ +  + M      P +  YN+++  +G+ GH  +    F
Sbjct: 255 NVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILF 314

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           ++M+ +G+ PN+++Y +++ AY  +          +Q  ++ ++LD
Sbjct: 315 RRMQAQGISPNAVSYDTMIQAYCHS----------KQAADAQIVLD 350



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 37/245 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L++M  +  + ++A+ +++ +L  GLKP+V  YT LV  Y ++    EA     +M
Sbjct: 153 TFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEM 212

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V  CKPD+  YS++                                   I  YGKA  
Sbjct: 213 RRVG-CKPDLMIYSLM-----------------------------------ISVYGKAGS 236

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE    F  + ++ G  P++ T   +I A+G  G ++++  ++NE    G   D+   N
Sbjct: 237 AEEAALVFRQL-QNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYN 295

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++  +YGR G   +   +   MQ +   P  V+Y+ +I+ +  +      +    +M   
Sbjct: 296 VMMGAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRA 355

Query: 356 GMKPN 360
           G  P+
Sbjct: 356 GFSPD 360



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 36/240 (15%)

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           V+ G   P+  T   ++   G +G   +  + ++E    GV+  + + N +  +Y R G+
Sbjct: 1   VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60

Query: 307 YDKMRSVMDFM-----------------------------QKRF-------FFPTVVTYN 330
           + K   + + M                             +K F         P V TYN
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++    + GH E+ +E   +M+   + PN IT+ +L+  + + G + +   + +++ ++
Sbjct: 121 TLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDA 180

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +      +  ++  Y +A   ++  E+FL M+   C PD + ++ MI  Y   G  E A
Sbjct: 181 GLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEA 240



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 1/142 (0%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           +QK    P   TY +V+   G+AG   +  E F +M   G++    ++ S++ AY++ GL
Sbjct: 1   VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFA 435
             K   +   +  S +  D    + ++S  G+    VE   ++F  +KE   +P   T+ 
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120

Query: 436 TMIQAYNALGMTEAAQNLENKM 457
           T++   +  G TE  + LE +M
Sbjct: 121 TLLSVLSRGGHTERCKELEIEM 142


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 324

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             MV S  C PD+ T N++I  +     +E+  + + E +  G+  +  T NIL +   +
Sbjct: 385 EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG  D  + +   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  MK
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E   +P++  + T+I+A    G  EA+  L  +M
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 160/344 (46%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           YQ    TF  L+  L    +  +A  L + M++ G +P +  Y  +V+   + G  D AF
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           + +N M+     +P V  Y+ +I    K+   D    +  EM   GI  + VTY+++I  
Sbjct: 242 NLLNKMEQ-GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                ++ +     S M+E    +PD+FT +++I A+   G + + EK Y+E     +  
Sbjct: 301 LCNYGRWSDASRLLSDMIERK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            I T + L   +      D+ + + +FM  +  FP VVTYN +I+ F K   +E+  E F
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  RG+  N++TY  L+    +AG       I +++ +  V  +   +N ++    + 
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK   +F  ++     P   T+  MI+     G  E   +L
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+  +A  L + M   G +P+ 
Sbjct: 128 RRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNT 186

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L+          EA + I+ M +   C+PD+ TY +++    K    DL   +L 
Sbjct: 187 VTFNTLIHGLFLHNKASEAMALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    +E   + YNTIIDG  K K  ++  + F  M E+ G  P++ T +S+IS   N 
Sbjct: 246 KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNY 304

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +W                             D  R + D ++++   P V T+
Sbjct: 305 G------RWS----------------------------DASRLLSDMIERKIN-PDVFTF 329

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           + +I+ F K G + + E+ + +M  R + P+ +TY SL++ +     + +   +   + +
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                D   +N +I  + +   VE+  E+F  M +R  V + +T+  +IQ     G  + 
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 450 AQEIFKEMVS 459



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 145/311 (46%), Gaps = 2/311 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     + YTYSI
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-IPHNHYTYSI 121

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +  +  L   +L +M  LG E + VT +++++GY  +K+  E  +    M  + 
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT- 180

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+  T N++I          +     +     G + D+ T  ++     + G  D  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
            ++++ M++    P V+ YN +I+   K  H++     FK+M+ +G++PN +TY SL+S 
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
               G       +L  +    +  D   F+ +I A+ + G + +  +L+  M +R   P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 431 NITFATMIQAY 441
            +T++++I  +
Sbjct: 361 IVTYSSLINGF 371



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 35/282 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +  +A  L++ M+   + PS+  Y++L++ +     LDEA      M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV TY+ LIK   K+ R +   ++  EMS  G+  + VTYN +I G  +A  
Sbjct: 388 VS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            +  +  F  MV  G                                     P I+T N 
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MI     +G +E     +   +L GVK D+   N +   + R G  ++  ++   M++  
Sbjct: 507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
             P    YN +I    + G  E   E  K+M+  G   ++ T
Sbjct: 567 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%)

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY+I+I  F +   +        KM   G +PN +T  SL++ Y  +  I +  +++ Q+
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             +    +T  FN +I          +   L   M  + C PD +T+  ++      G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 448 EAAQNLENKM 457
           + A NL NKM
Sbjct: 238 DLAFNLLNKM 247


>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
           inaguensis]
          Length = 433

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 161/335 (48%), Gaps = 6/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK    + A    + M  D +   + +Y+ L+    +     +A S  + +
Sbjct: 14  TYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCDYSKAISIFSRL 73

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  Y + KK
Sbjct: 74  KR-SGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 132

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++  + + N
Sbjct: 133 FLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYN 191

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ R
Sbjct: 192 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 251

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V   
Sbjct: 252 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA 311

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 312 KRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 158/319 (49%), Gaps = 4/319 (1%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKF 198
           M    L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K 
Sbjct: 3   MRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQ--DQVPGDLILYSNLIELSXKL 60

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
             +     I + +   G     V YN +I+ +GKAK F E  S  S M ++ G  P+  +
Sbjct: 61  CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTS 119

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            +++++ Y  +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+
Sbjct: 120 YSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           K    P+VV+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     
Sbjct: 180 KMGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI
Sbjct: 240 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 299

Query: 439 QAYNALGMTEAAQNLENKM 457
            AY   G+   A+ L +++
Sbjct: 300 VAYERAGLVAHAKRLLHEL 318



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 66  AISIFSRLKRSG-FXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 124

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 125 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E S V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 184 EPSVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 242

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 243 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 300

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 301 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVK 356

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F   +     PD+   A ++ AY  L   + A ++ 
Sbjct: 357 DITVFERMIHLLSKYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 416

Query: 455 NKM 457
            +M
Sbjct: 417 MEM 419



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 164/388 (42%), Gaps = 75/388 (19%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++MK
Sbjct: 50  YSNLIELSXKLCDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMK 109

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 110 T-AGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 168

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P + + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 169 KEADKLFWGM-RKMGIEPSVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 224

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 225 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 284

Query: 354 HRGMKPNSITYCSLVSAYSK-------------------------------AGLIMKVDS 382
             G++ + I + +++ AY +                               AG I +   
Sbjct: 285 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATY 344

Query: 383 ILRQVENSDVILDTPFFN-----------------------------------CIISAYG 407
           + RQ  ++  + D   F                                     +++AYG
Sbjct: 345 VFRQAIDAGXVKDITVFERMIHLLSKYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLNAYG 404

Query: 408 QAGDVEKMGELFLTMKERHCV-PDNITF 434
           +  + +K  ++++ M+E  CV  D + F
Sbjct: 405 KLQEFDKANDVYMEMQEVGCVFSDEVHF 432



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 83/174 (47%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E     +  D  T + L   +G+ G++D   S +  M++      ++ Y+ +IE   K 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKL 60

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
               K    F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 120

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  +K +    A++++  +++++  +   +T+T ++ + GK KQP  A  +F  M S G
Sbjct: 264 LDGLLKARCTVKAVEVYQRMKKERC-RTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIG 322

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            K ++  YTALV+A+ + GL ++A      M+     +PDVY Y+ L+++ ++       
Sbjct: 323 CKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGH-EPDVYAYNALMEAYSRAGFPQGA 381

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +I + M ++G E    +YN ++D YG+A    E E++F ++ + G   P + +   ++S
Sbjct: 382 SEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQG-MAPTMKSHMLLLS 440

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A+  SGN+ + E+   + +  G++ D   LN +  +Y RAG  D M  ++  M       
Sbjct: 441 AHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDL-AGSA 499

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-----GMKPNSITYCSLVSAYSKAGLIMK 379
            V ++N+ +  + +AG++ +ME  F+ ++ R     G+  + +++ S +  Y++     K
Sbjct: 500 DVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGK 559

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
              I  ++ ++    D      +++A      VE++  +  +M
Sbjct: 560 CLEIFEEMVDAGCYPDAGTAKVLMAACSDERQVEQVAAIVRSM 602



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 5/322 (1%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           ++     +P +  Y  L+ AYG+   L++A S    +   + C P   TY++L+++    
Sbjct: 177 IVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLE-AQCVPTEDTYALLLRAYCNA 235

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
                 E +++EM   GI  SA  YN  +DG  KA+   +    +  M +   C  +  T
Sbjct: 236 RSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKER-CRTNTET 294

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
              MI+ YG S       K +NE   +G KA+I T   L  ++ R G+ +K   V + MQ
Sbjct: 295 YTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQ 354

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 355 QAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHR 414

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           + ++    ++   +         ++SA+ ++G+V +  ++   + +    PD      M+
Sbjct: 415 EAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAML 474

Query: 439 QAYNALGMTEAAQNLENKMIAM 460
            AY   G  +   ++E  + AM
Sbjct: 475 HAYARAGRLD---DMERLLAAM 493



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 153/312 (49%), Gaps = 7/312 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+      +   +A  +   M   G+ PS  VY A +    ++    +A      M
Sbjct: 224 TYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRM 283

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C+ +  TY+++I    K  +     KI  EM  +G + +  TY  +++ + +   
Sbjct: 284 KK-ERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGL 342

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+ E  F  M ++G   PD++  N+++ AY  +G  +   + ++    MG + D  + N
Sbjct: 343 CEKAEEVFEQMQQAGH-EPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYN 401

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL  +YGRAG++ +  +  + ++++   PT+ ++ +++    ++G++ + E+   ++   
Sbjct: 402 ILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKS 461

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVE 413
           G++P++    +++ AY++AG   ++D + R +   D+    D    N  ++AY +AG + 
Sbjct: 462 GLRPDTFALNAMLHAYARAG---RLDDMERLLAAMDLAGSADVGSHNVAVNAYARAGYLG 518

Query: 414 KMGELFLTMKER 425
           +M   F  ++ R
Sbjct: 519 RMEAAFEGIRRR 530



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 307 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           +D + SV +++  R  F P ++ YN++I+ +G+   + K E  +  +      P   TY 
Sbjct: 167 WDPIISVCEWIVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYA 226

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+ AY  A  + + + ++ +++   +      +N  +    +A    K  E++  MK+ 
Sbjct: 227 LLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKE 286

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM--IAMKEN 463
            C  +  T+  MI  Y       +A  + N+M  I  K N
Sbjct: 287 RCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKAN 326


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 167/364 (45%), Gaps = 38/364 (10%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG  ++  +A  LF E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 122 RSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQV 181

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT--------- 222
           +++M S     PD  TYS+L+ + T+  R++    +L EM   G++ S+           
Sbjct: 182 LDEM-SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 240

Query: 223 --------------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
                                     YN +ID +GK         +F  M E G   PD+
Sbjct: 241 DRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG-IEPDV 299

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T N++I A+   G  ++  + ++E           T NI+    G    ++ + +++  
Sbjct: 300 VTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAE 359

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+S  Y +LV+AY++ GL
Sbjct: 360 MKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGL 419

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                ++++ +    +   T   N +I+A+G+   + +   +   MKE    PD IT+ T
Sbjct: 420 ADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTT 479

Query: 437 MIQA 440
           +++A
Sbjct: 480 LMKA 483



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 154/343 (44%), Gaps = 1/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+    + + P+ A  L     + GL P  +  TAL+S+ G +  + EA +   +  
Sbjct: 91  FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFF 150

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
              + KP    Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++
Sbjct: 151 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 210

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E        M E+ G  P  +  + +++ + + G  +K      E +  GV+ D    N+
Sbjct: 211 ESARILLKEM-EADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNV 269

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +  ++G+           D M++    P VVT+N +I+   K G  ++  E F +M+   
Sbjct: 270 MIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 329

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
               + TY  +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  
Sbjct: 330 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 389

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +    MK     P +  +  ++ AY   G+ + A N+   M A
Sbjct: 390 DCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRA 432



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 156/329 (47%), Gaps = 10/329 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 196 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREM 255

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            + S  +PD + Y+++I +  K+    H  D  +++  E    GIE   VT+NT+ID + 
Sbjct: 256 HA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE----GIEPDVVTWNTLIDAHC 310

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C     T N MI+  G     E +E    E    G+  +I
Sbjct: 311 KGGRHDRAIELFDEMRESN-CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 369

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G + +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 370 ITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKA 429

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G++ +++   SL++A+ +   I +  S+L+ ++ + +  D   +  ++ A  +   
Sbjct: 430 MRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 489

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQA 440
            EK+  ++  M    C PD    A +  A
Sbjct: 490 FEKVPVIYEEMITSGCAPDRKARAMLRSA 518



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 3/302 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           L+P   +++ L+SA+ ++ L D A   +   +++    P     + LI S     R    
Sbjct: 84  LEPDAPLFSDLISAFARARLPDAALELLASAQAIG-LTPRSNAVTALISSLGSARRVAEA 142

Query: 205 EKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           E +  E    G I+     YN ++ GY K    +  E     M +  G  PD  T + ++
Sbjct: 143 EALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC-GVAPDEATYSLLV 201

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AY  +G  E       E    GVK      + +   +   G + K  +V+  M      
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P    YN++I+TFGK   +    + F +M+  G++P+ +T+ +L+ A+ K G   +   +
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
             ++  S+  L T  +N +I+  G+    E +  +   MKE+  VP+ IT+ T++  Y  
Sbjct: 322 FDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGR 381

Query: 444 LG 445
            G
Sbjct: 382 SG 383



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 7/282 (2%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARC-QTFTKLMV-MLGKCKQPEQASLLFEVMLSDGLKPS 148
           + +WQ   K F +LR+      R  + F  +M+   GK      A   F+ M  +G++P 
Sbjct: 242 RGEWQ---KAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPD 298

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  +  L+ A+ + G  D A    ++M+  S+C     TY+I+I    +  R++ +E +L
Sbjct: 299 VVTWNTLIDAHCKGGRHDRAIELFDEMRE-SNCPLGTTTYNIMINLLGEEQRWEGVEAML 357

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AEM   G+  + +TY T++D YG++ +F+E      AM ++ G  P     +++++AY  
Sbjct: 358 AEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM-KADGLKPSSTMYHALVNAYAQ 416

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  +            G++A    LN L  ++G      +  SV+ FM++    P V+T
Sbjct: 417 RGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVIT 476

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           Y  +++   +    EK+   +++M   G  P+      L SA
Sbjct: 477 YTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSA 518



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 3/284 (1%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G A++  E
Sbjct: 82  SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 141

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            E+ F     +G   P     N+++  Y   G+++  E+  +E +  GV  D  T ++L 
Sbjct: 142 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 201

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++M   G++
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   Y  ++  + K   +        ++    +  D   +N +I A+ + G  ++  EL
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
           F  M+E +C     T+  MI   N LG  +  + +E  +  MKE
Sbjct: 322 FDEMRESNCPLGTTTYNIMI---NLLGEEQRWEGVEAMLAEMKE 362


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 164/335 (48%), Gaps = 6/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK    + A    + M  D +   + +Y+ L+    +     +A S  + +
Sbjct: 11  TYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S   PD+  Y+ +I    K   F     +++EM   G+  + V+Y+T++  Y + KK
Sbjct: 71  KR-SGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKK 129

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  + F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N
Sbjct: 130 FLEALTVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ R
Sbjct: 189 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 248

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PNSITY +++S +SK G + +   + +++ +S V +D   +  +I AY +AG V   
Sbjct: 249 GIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA 308

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 309 KRLLHELKR----PDNIPRDTAIHILAGSGRIEEA 339



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 162/371 (43%), Gaps = 39/371 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVMPNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  + K G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + +G I +   
Sbjct: 282 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGSGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAYG 401

Query: 443 ALGMTEAAQNL 453
            L   + A N+
Sbjct: 402 KLHEFDKANNV 412



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 93/188 (49%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD +T +++I+ +G  G  +    W  +     V  D+   + L +   +   Y K  S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              +++  F P +V YN +I  FGKA    +      +M+  G+ PN+++Y +L++ Y +
Sbjct: 67  FSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVE 126

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
               ++  ++  ++     +LD    N +I  YGQ G  ++  +LF  M++    P+ ++
Sbjct: 127 NKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 434 FATMIQAY 441
           + T+++ Y
Sbjct: 187 YNTLLRVY 194



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 125 VENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 181

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  + K  K       F+++ SS        +  M+   E
Sbjct: 241 LIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     SG IE+    + +    G   DI     
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   + +   Y  +  V D M+   +FP      +V+  +GK    +K    + +M+  G
Sbjct: 361 MIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAYGKLHEFDKANNVYIEMQDEG 420



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 176/381 (46%), Gaps = 10/381 (2%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           K + A+++   + Q+  Y       T  +++   C+      A  L + M   G  P V 
Sbjct: 219 KLKQAMEVLDRMLQRDCYP---DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV 275

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  LV+   + G LDEA   +NDM S S C+P+V T++I+++S     R+   EK+LA+
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S VT+N +I+   +             M + G C P+  + N ++  +    
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG-CQPNSLSYNPLLHGFCKEK 393

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++  ++       G   DI T N +  +  + G  +    +++ +  +   P ++TYN
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VI+   KAG   K  +   +M+ + +KP++ITY SLV   S+ G + +      + E  
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  +   FN I+    ++   ++  +  + M  R C P+  ++  +I+     GM + A
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573

Query: 451 QNLENKMIA---MKENSGKKL 468
             L N++     MK++S +++
Sbjct: 574 LELLNELCNKGLMKKSSAEQV 594



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 22/353 (6%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T  +    LGK ++   A+ + E++   G  P V  Y  ++S Y ++G ++ A S ++
Sbjct: 140 CTTLIRGFCRLGKTRK---AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLD 196

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID----- 228
            M SVS   PDV TY+ +++S     +     ++L  M         +TY  +I+     
Sbjct: 197 RM-SVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252

Query: 229 -GYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
            G G A K  +EM           GC PD+ T N +++     G +++  K+ N+    G
Sbjct: 253 SGVGHAMKLLDEMRDR--------GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            + ++ T NI+ +S    G +     ++  M ++ F P+VVT+NI+I    + G + +  
Sbjct: 305 CQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAI 364

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           +  +KM   G +PNS++Y  L+  + K   + +    L ++ +     D   +N +++A 
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + G VE   E+   +  + C P  IT+ T+I      G T  A  L ++M A
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 135/328 (41%), Gaps = 32/328 (9%)

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L+E F  + +M    +  PD+   + LI+   +  +     KIL  +   G     
Sbjct: 114 RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDV 172

Query: 221 VTYNTIIDGYGKAKK-------FEEMESS---------FSAMVESG-------------- 250
           +TYN +I GY KA +        + M  S           ++ +SG              
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232

Query: 251 -GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
             C+PD+ T   +I A      +    K  +E    G   D+ T N+L     + G  D+
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++ M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              + GL+ +   IL ++       ++  +N ++  + +   +++  E    M  R C P
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T+ TM+ A    G  E A  + N++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQL 440



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 12/235 (5%)

Query: 231 GKAKKFEEMESSFS--------AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           G+A+KFE + S +S        + V S     D+ + N+ +     +G +E+  K+    
Sbjct: 70  GRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVES-NNHLRQMVRTGELEEGFKFLENM 128

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G   DI     L + + R G   K   +++ ++     P V+TYN++I  + KAG I
Sbjct: 129 VYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEI 188

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                   +M    + P+ +TY +++ +   +G + +   +L ++   D   D   +  +
Sbjct: 189 NNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTIL 245

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           I A  +   V    +L   M++R C PD +T+  ++      G  + A    N M
Sbjct: 246 IEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           + G +E+  ++ + M + G  P+ I   +L+  + + G   K   IL  +E S  + D  
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALGMTEAAQNLENK 456
            +N +IS Y +AG++       L++ +R  V PD +T+ T++++    G  + A  + ++
Sbjct: 174 TYNVMISGYCKAGEINNA----LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 457 MI 458
           M+
Sbjct: 230 ML 231


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 163/330 (49%), Gaps = 2/330 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  + E+A  LF+ ML  G++P V +YT++++   + G +  AF   ++M
Sbjct: 264 TYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEM 323

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P+ YTY  LI    K       E ++ +M   G++ + V +NT++DGY K   
Sbjct: 324 TE-RRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGM 382

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       +++  G   D FT N + S +  S   E+ ++        GV  ++ + +
Sbjct: 383 IDE-ALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFS 441

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y +   + + R +   M+K+   P+VVTYN  IE + K G +E+  +   +M+ R
Sbjct: 442 ILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQER 501

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++ TY SL+     +G + +   +  ++    +  +   +  IIS   + G  ++ 
Sbjct: 502 GLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEA 561

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALG 445
            +L+  M +   VPD+  ++++I + + +G
Sbjct: 562 FKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 10/341 (2%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDMK 176
           V+ G CK+ E  +A  L + ++  G KPSV  Y  L++ Y      G ++E  S +   K
Sbjct: 198 VVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME--K 255

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +V D   +V TY++LI+  ++  + +  EK+  EM   GIE     Y +II+   K    
Sbjct: 256 NVVDY--NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 313

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F  M E     P+ +T  ++I+    +G ++  E   N+    GV  +    N 
Sbjct: 314 KRAFVLFDEMTER-RLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 372

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   Y + GM D+   + + MQ++ F     T NI+   F ++   E+ +     M+ RG
Sbjct: 373 LMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG 432

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + PN +++  L+  Y K     +   + + +E          +N  I  Y + G +E+  
Sbjct: 433 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 492

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +L   M+ER  +PD  T+ ++I    A G  + A  L N+M
Sbjct: 493 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM 533



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 120/294 (40%), Gaps = 49/294 (16%)

Query: 193 KSCTKF-------HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +SC +F          +L  + L +M   GIE    ++  ++DG  K  +    ++    
Sbjct: 158 RSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDE 217

Query: 246 MVESGGCHPDIFTLNSMISA-----------------------------------YGNSG 270
           +V   G  P + T N++++                                    Y  S 
Sbjct: 218 LV-CKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSS 276

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            IE+ EK ++E    G++ D+     +     + G   +   + D M +R   P   TY 
Sbjct: 277 KIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYG 336

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQV 387
            +I    KAG ++  E     M+ +G+  N + + +L+  Y K G+I   +++ +I++Q 
Sbjct: 337 ALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQ- 395

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                 +D    N I S + ++   E+   L LTM+ER   P+ ++F+ +I  Y
Sbjct: 396 --KGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIY 447



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           MV+SG     + +  +++      G + + +   +E    G K  + T N L   Y    
Sbjct: 183 MVDSG-IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIK 241

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
               +  ++  M+K      V TY ++IE + ++  IE+ E+ F +M  +G++P+   Y 
Sbjct: 242 DVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYT 301

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           S+++   K G + +   +  ++    ++ +   +  +I+   +AG+++    +   M+ +
Sbjct: 302 SIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK 361

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               + + F T++  Y   GM + A  L+N M
Sbjct: 362 GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 393



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 90/193 (46%)

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A   SGN+E   ++  +    G++  + +   +     + G   + +++MD +  + F P
Sbjct: 166 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 225

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           +V+TYN ++  + +   +  + E    M+   +  N  TY  L+  YS++  I + + + 
Sbjct: 226 SVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF 285

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++    +  D   +  II+   + G++++   LF  M ER  VP+  T+  +I      
Sbjct: 286 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 345

Query: 445 GMTEAAQNLENKM 457
           G  +AA+ + N M
Sbjct: 346 GEMKAAEMMVNDM 358



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTA 154
           AL++  +++Q+ +       FT  ++  G C+  + E+A  L   M   G+ P+V  ++ 
Sbjct: 386 ALRLQNIMQQKGF---EIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 442

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+  Y +     EA      M+      P V TY+  I+   K  + +   K++ EM   
Sbjct: 443 LIDIYCKEQNFAEARRLFKVMEKKGKA-PSVVTYNAFIERYCKKGKMEEAYKLINEMQER 501

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+     TY ++IDG   +   +     F+ M +  G + ++ T   +IS     G  ++
Sbjct: 502 GLMPDTYTYTSLIDGERASGNVDRALELFNEMPQL-GLNRNVVTYTVIISGLSKDGRADE 560

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAG-MYDKMRSVMDFMQ 318
             K Y+E N  G+  D    + L  S  + G +   + +V+D ++
Sbjct: 561 AFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLENVVDRIE 605


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 157/349 (44%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M 
Sbjct: 162 LSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMS 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C+PD  TYS LI +  K  R D   ++L EM   G++ +A  Y  II       + 
Sbjct: 222 NEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNV 281

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G I++   +Y+E    G K 
Sbjct: 282 HGALSLFEEMRYMY--------CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKP 333

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    + + M      P VVTYN +I+  F     + ++  +
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+  TY  L+  + K   I K   +L +++          +  +I A G+
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE         +A MI+     G  + A NL ++M
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEM 502



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 3/351 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T ++ +  K      A  LFE M     +P V  YT L+   G++G +DEA+ 
Sbjct: 262 QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             ++M+    CKPD    + +I    K  R D   K+  EM       + VTYNTII   
Sbjct: 322 FYHEMQR-EGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M +  G  P  FT + +I  +  +  IEK      E +  G   
Sbjct: 381 FESKSRVSEVFSWFERM-KGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPP 439

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLF 499

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  PN   Y +L+S  ++A ++ +  + +R+++    + D   +N I++   + 
Sbjct: 500 DEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKT 559

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           G   +  E+   MK     PD +++ T++ A +  GM E A  L  +M A+
Sbjct: 560 GGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNAL 610



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  LGK  + ++A   +  M  +G KP   V   +++  G++G LD+      +M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
             VS C P+V                                    +TYSILI    K +
Sbjct: 362 -GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTN 420

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFT 258
           R +    +L EM   G       Y ++ID  GKAK+++     F  + E+ G     ++ 
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 480

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           +  MI   G +G ++     ++E + +G   ++   N L     RA M D+  + M  MQ
Sbjct: 481 V--MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQ 538

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P + +YNI++    K G   +  E    MK+  +KP++++Y +++SA S AG+  
Sbjct: 539 EHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFE 598

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           +   +++++       D   ++ I+ A G+
Sbjct: 599 EAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I      +++ EM      MV S  C      L+ +I   GN+  I K    + +
Sbjct: 125 TYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQ 184

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAG 340
                 +   Q  N +       G Y+K+  + + M       P  VTY+ +I  F K G
Sbjct: 185 IKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLG 244

Query: 341 HIEKMEEYFKKMKHRGM-----------------------------------KPNSITYC 365
             +       +MK  GM                                   +P+  TY 
Sbjct: 245 RQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYT 304

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+    KAG I +      +++      DT   N +I+  G+AG ++   +LF  M   
Sbjct: 305 ELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS 364

Query: 426 HCVPDNITFATMIQA 440
           HC+P+ +T+ T+I+A
Sbjct: 365 HCIPNVVTYNTIIKA 379


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 202/457 (44%), Gaps = 52/457 (11%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWY 110
           L K  R E  +KN E+   S          V+  +D   K +    A K+F     +Q  
Sbjct: 153 LLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV--IDGLCKAQMLPDACKVF-----EQMV 205

Query: 111 QARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q  C     T+T L+    K  + ++A  L +VML+ G +P+   Y ++V  + +  +++
Sbjct: 206 QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMIN 265

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA   I  M+    C+P ++ ++ L+       R +   ++L EM+  G     + Y ++
Sbjct: 266 EAKEVIAQMRE-RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSL 324

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE------------- 273
           ID      +  E    F +M+E G C PD  T  ++I  +   GN+E             
Sbjct: 325 IDLLFSTGRVPEARHVFDSMIEKG-CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG 383

Query: 274 ----------------KMEKW------YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
                           K+E+       Y+     G+K +  T N+L     + G  D+  
Sbjct: 384 VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAF 443

Query: 312 SVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           S+  + ++K    PT+V+Y I+I+  GKAG + +    F++M  RG+ P   TY SL+ +
Sbjct: 444 SLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYS 503

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            +KAG I +   ++  +    V  D   ++ +I+    +  V+   ++F  M +R C P+
Sbjct: 504 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 563

Query: 431 NITFATMIQAYNALGMT---EAAQNLENKMIAMKENS 464
            +T+  + + + A G     EA +   ++ +AM+  S
Sbjct: 564 EVTYKVLRRGFRAAGRALDLEAVKQHFSQGVAMEAGS 600



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 8/338 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA-FSTINDM 175
           FT L+    K  QP+    L    L    +P V +YT+++  Y ++G LD   F  +   
Sbjct: 45  FTTLIHGFCKAGQPQVGHKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPK 103

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S+     DV +Y+ +IK      R D   ++  E+   G   + V Y  +IDG  KA +
Sbjct: 104 ASL-----DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGR 158

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+   +F  M  S  C P   T   +I     +  +    K + +    G   D  T  
Sbjct: 159 IEDGLKNFEEMSGSS-CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYT 217

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + +A   D+ R ++D M  +   PT VTY  ++  F K   I + +E   +M+ R
Sbjct: 218 TLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRER 277

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G +P    + SL+S Y   G   +   +L ++       D   +  +I      G V + 
Sbjct: 278 GCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEA 337

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +F +M E+ C PD +T+ T+IQ ++ +G  EAA  +
Sbjct: 338 RHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 375



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 152/370 (41%), Gaps = 36/370 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T ++  L   K+ ++A  LFE + + G  P+V  YTA++    ++G +++      +M
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM 169

Query: 176 KSVS----------------------------------DCKPDVYTYSILIKSCTKFHRF 201
              S                                   C PD  TY+ LI   +K  + 
Sbjct: 170 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 229

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           D   K+L  M   G E +AVTY +I+ G+ K     E +   + M E G C P +F   S
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG-CEPGLFIFTS 288

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++S Y + G  E+  +   E    G   D+     L       G   + R V D M ++ 
Sbjct: 289 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +TY  +I+ F K G++E   E  + M   G+ P+   Y SL+  Y K   + +  
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQA 440
            +  ++  S +  +   FN ++    + G  ++   LF  M E+  VP   +++  +I  
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468

Query: 441 YNALGMTEAA 450
               G    A
Sbjct: 469 LGKAGRVSEA 478



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 151/345 (43%), Gaps = 10/345 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  ++  L    + ++A   F  M+ +G +P V  +T L+  + ++G        +N  
Sbjct: 9   SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLN-- 66

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDL--IEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +++   +PDV+ Y+ +I    K    D      +  + S        ++Y T+I G   +
Sbjct: 67  QALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASL-----DVISYTTVIKGLADS 121

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K+ +E    F  + ++ GC P++    ++I     +G IE   K + E +         T
Sbjct: 122 KRIDEACELFEEL-KTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
             ++     +A M      V + M ++   P  +TY  +I+ F KA  +++  +    M 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G +P ++TY S+V  + K  +I +   ++ Q+           F  ++S Y   G  E
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 300

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++   M  R C PD I + ++I    + G    A+++ + MI
Sbjct: 301 EAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMI 345



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G E + V+YNT+I G     K +E    F++M+++ GC PD+    ++I  +  +G  +
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDN-GCEPDVIAFTTLIHGFCKAGQPQ 59

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK--MRSVMDFMQKRFFFPTVVTYNI 331
              K  N+  L   + D+     +   Y +AG  D    R+V            V++Y  
Sbjct: 60  VGHKLLNQ-ALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASL-----DVISYTT 113

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           VI+    +  I++  E F+++K  G  PN + Y +++    KAG I        ++  S 
Sbjct: 114 VIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSS 173

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            +     +  +I    +A  +    ++F  M ++ CVPD IT+ T+I  ++     + A+
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 452 NLENKMI 458
            L + M+
Sbjct: 234 KLLDVML 240


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 147/287 (51%), Gaps = 3/287 (1%)

Query: 86  DEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ +KQ +   +AL  F  L++Q  ++    T+T ++ +LG+ +Q    + L   M+ DG
Sbjct: 359 NQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDG 418

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P+V  Y  L+ +YG++  L+EA S  + M+  + C+PD  TY  LI    K    D+ 
Sbjct: 419 CQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQE-AGCQPDRVTYCTLIDIHAKAGFLDVA 477

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  +M    +     TY+ II+  GKA         F  MV+  GC P++ T N MI+
Sbjct: 478 LHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQ-GCVPNLVTYNIMIA 536

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               + N     + Y +    G + D  T +I+ +  G  G  ++  ++   M+++ + P
Sbjct: 537 LQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVP 596

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
               Y ++++ +GK G++EK  E+++ M + G+ PN  T  SL+SA+
Sbjct: 597 DEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAF 643



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K  +  K D +TY+ ++    +  +F  I K+LAEM   G + + VTYN +I  YG+A 
Sbjct: 378 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRAN 437

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E  S F  M E+G C PD  T  ++I  +  +G ++     Y +     +  D  T 
Sbjct: 438 YLNEAVSVFDRMQEAG-CQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTY 496

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +++    G+AG       +   M  +   P +VTYNI+I    KA +     E ++ M++
Sbjct: 497 SVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQN 556

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +P+ +TY  ++      G + + ++I  +++  + + D P +  ++  +G+ G+VEK
Sbjct: 557 AGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEK 616

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             E +  M      P+  T  +++ A+  +     A NL   M+ +
Sbjct: 617 SWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRL 662



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 4/184 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + +  AL+++  + Q   +Q    T++ +M +LG C   E+A  +F  M      P  
Sbjct: 540 KARNYPTALELYRDM-QNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDE 598

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  LV  +G+ G +++++     M +   C P+V T + L+ +  + HR      +L 
Sbjct: 599 PVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLC-PNVPTCNSLLSAFLRVHRLSDAYNLLQ 657

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M  LG++ S  TY  ++    +A+   +M      M  +G  HP    L SM +A  + 
Sbjct: 658 SMLRLGLQPSLQTYTLLLSCCTEARSSFDMGFCGELMAVTG--HPAHMFLLSMPAAGPDG 715

Query: 270 GNIE 273
            N+ 
Sbjct: 716 QNVR 719


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 5/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L    +  +A  L + ML  G +PSV  YT L+ A  +S    +A   +++M
Sbjct: 147 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 206

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P++ TY+++I    +  R D   + L  +S  G +   V+Y T++ G   AK+
Sbjct: 207 RA-KGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 265

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E++E  F+ M+E   C P+  T + ++  +   G +E+  +   + +  G  A+    N
Sbjct: 266 WEDVEELFAEMMEKN-CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN 324

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +  + G  D     ++ M      P  ++Y  V++   +A   E  +E  K+M  +
Sbjct: 325 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN +T+ + +    + GLI +   ++ Q+      ++   +N +++ +   G V+  
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF +M    C P+ IT+ T++         +AA  L  +M+
Sbjct: 445 LELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEML 484



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L +   S G  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTL 119

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +    ++ + D   +++A M    +   A TY  II G     +  E  S    M+  G 
Sbjct: 120 VAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG- 175

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P + T   ++ A   S    +  +  +E    G   +I T N++     R G  D  R
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             ++ +    F P  V+Y  V++    A   E +EE F +M  +   PN +T+  LV  +
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G++ +   +L Q+       +T   N +I+   + G V+   +    M    C PD 
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 355

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           I++ T+++        E A+ L  +M+
Sbjct: 356 ISYTTVLKGLCRAERWEDAKELLKEMV 382



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 146/341 (42%), Gaps = 7/341 (2%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           TKL+  L +  +   A+ +       G    V  Y  LV+ Y + G LD A   I  M  
Sbjct: 82  TKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV 141

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                PD YTY+ +I+      R      +L +M + G + S VTY  +++   K+  F 
Sbjct: 142 A----PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG 197

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +       M  + GC P+I T N +I+     G ++   ++ N  +  G + D  +   +
Sbjct: 198 QAMEVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTV 256

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K    A  ++ +  +   M ++   P  VT+++++  F + G +E+  +  ++M   G 
Sbjct: 257 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 358 KPNSITYCSLV-SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             N+ T C++V +   K G +      L  + +     DT  +  ++    +A   E   
Sbjct: 317 AANT-TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           EL   M  ++C P+ +TF T I      G+ E A  L  +M
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 130/306 (42%), Gaps = 19/306 (6%)

Query: 102 GLLRQQQWYQAR----------CQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R ++W  A+          C     TF   + +L +    EQA++L E M   G + 
Sbjct: 364 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV 423

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           ++  Y ALV+ +   G +D A      M     CKP+  TY+ L+       R D   ++
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTTLLTGLCNAERLDAAAEL 479

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           LAEM       + VT+N ++  + +    +E       M+E G C P++ T N+++    
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGIT 538

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              N E+  +  +     GV  DI T + +     R    ++   +   +Q     P  V
Sbjct: 539 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAV 598

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            YN ++    K  + +   ++F  M   G  PN +TY +L+   +    + +   +LR++
Sbjct: 599 IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 658

Query: 388 ENSDVI 393
            +  V+
Sbjct: 659 CSRGVL 664



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 165/384 (42%), Gaps = 41/384 (10%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K+W+   ++F  + ++        TF  L+    +    E+A  + E M   G   +  +
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNE-VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--------- 202
              +++   + G +D+AF  +N+M S   C PD  +Y+ ++K   +  R++         
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYG-CSPDTISYTTVLKGLCRAERWEDAKELLKEM 381

Query: 203 -----------------------LIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                                  LIE+   ++ +MS  G E + VTYN +++G+    + 
Sbjct: 382 VRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRV 441

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F +M     C P+  T  ++++   N+  ++   +   E        ++ T N+
Sbjct: 442 DSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G+ D+   +++ M +    P ++TYN +++   K  + E+  E    +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ +TY S++   S+   + +   +   V++  +      +N I+ A  +  + +   
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           + F  M    C+P+ +T+ T+I+ 
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEG 641


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 2/276 (0%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++   ++    T+T ++ +LG+ KQ    + L + M+ DG +P+V  Y  +
Sbjct: 361 VALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRI 420

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + +YG++  L +A +    M+  + C+PD  TY  LI    K    D+   +  +M   G
Sbjct: 421 IHSYGRANYLQDAVNVFKQMQE-AGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAG 479

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +I+  GKA         F  MV+  GC P++ T N MI+    + N E  
Sbjct: 480 LTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDE-GCVPNLVTYNIMIALQAKARNYEIA 538

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K Y +    G + D  T  I+ +  G  G  ++   +   MQK+ + P    Y ++++ 
Sbjct: 539 LKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDL 598

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +GK+G+++K  E++  M   G+KPN  T  SL+SA+
Sbjct: 599 WGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAF 634



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 133/267 (49%), Gaps = 1/267 (0%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K +   + D +TY+ +I    +  +F  I K+L +M   G + + VTYN II  YG+A 
Sbjct: 369 LKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRAN 428

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             ++  + F  M E+G C PD  T  ++I  +  SG ++     Y +    G+  D  T 
Sbjct: 429 YLQDAVNVFKQMQEAG-CEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTY 487

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +++    G+AG  +    +   M      P +VTYNI+I    KA + E   + ++ M+ 
Sbjct: 488 SVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQ 547

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +P+ +TYC ++      G + + + I  +++  + + D P +  ++  +G++G+V+K
Sbjct: 548 SGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQK 607

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
             E +  M +    P+  T  +++ A+
Sbjct: 608 AWEWYHAMLKAGLKPNVPTCNSLLSAF 634



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A  IF  ++++ W       +  L+ + GK    ++A   +  ML  GLKP+V    +L+
Sbjct: 573 AEGIFIEMQKKNWVPDE-PVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLL 631

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           SA+ +   L +A+  +  M +    KP + TY++L+  CT     D+
Sbjct: 632 SAFLRVHQLSDAYQLLQSMLTFG-LKPSLQTYTLLLSCCTDAQTNDM 677


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 10/306 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L + K   +A  L + ML   L P +  Y +L++   ++G LD A+  ++ M
Sbjct: 295 TYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLM 353

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      PD  TY   I    K +R +   ++   ++  G+  + + Y+ +IDGY K  K
Sbjct: 354 KE-RGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGK 412

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    F  M+ S  C P+ +T N++I    ++GN+++    +++   MG+K  + T N
Sbjct: 413 VDEAGCLFEKML-SKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFN 471

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     + G +D     +  M      P   TYN  IE +  AG +++ E+   +MK  
Sbjct: 472 ILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEE 531

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD---- 411
           G+ P+  TY SL+ AY K GL      +L+ + ++D     P  +  +S   Q  D    
Sbjct: 532 GVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADC---EPSHHTFLSLIKQLFDKRYV 588

Query: 412 VEKMGE 417
           VEK GE
Sbjct: 589 VEKSGE 594



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 17/347 (4%)

Query: 117 FTKLMVMLGKC--KQPEQASLLFEVMLSDGLKPSVD--VYTALVSAYGQSGLLDEAFSTI 172
           FT    +LG C  K  + A  +FE M      P+ +   Y  L+    ++G +DEA S  
Sbjct: 228 FTSTSFILGYCRSKDVDSAFRVFEEM------PNRNEVSYNQLIHGLCEAGRIDEAVSLF 281

Query: 173 NDMKSVSDCKPDVYTYSILIKS-CTK-FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             MK    C P+VYTY+ LIK  C K  H+      +L EM    +    +TYN++I G 
Sbjct: 282 VRMKDDC-CYPNVYTYTALIKGLCRKNVHK---AMGLLDEMLERNLVPDLITYNSLIAGQ 337

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +A   +      S M E G   PD  T    I     S  +E+  + ++     GV A+
Sbjct: 338 CRAGHLDSAYRLLSLMKERGLV-PDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSAN 396

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +   ++L   Y + G  D+   + + M  +   P   T+N +I     AG++++    F 
Sbjct: 397 VIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFD 456

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M   G+KP   T+  L+    K G        L+++ +S        +N  I  Y  AG
Sbjct: 457 QMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAG 516

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            V++  ++ + MKE    PD+ T+ ++I+AY  LG+T +A ++   M
Sbjct: 517 KVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM 563



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 11/320 (3%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHR 200
           D  K S+  Y  L++   + GL+DE      +M  + VS    D+YT++++I    K   
Sbjct: 151 DITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVS---MDIYTFNLMINVYCKMGF 207

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
               ++ + +M   G+     T  + I GY ++K   +++S+F    E    + +  + N
Sbjct: 208 VKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSK---DVDSAFRVFEEMP--NRNEVSYN 262

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I     +G I++    +          ++ T   L K   R  ++  M  ++D M +R
Sbjct: 263 QLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAM-GLLDEMLER 321

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P ++TYN +I    +AGH++        MK RG+ P+  TY   +    K+  + + 
Sbjct: 322 NLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEA 381

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   +    V  +   ++ +I  Y + G V++ G LF  M  ++C P+  TF  +I  
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHG 441

Query: 441 YNALGMTEAAQNLENKMIAM 460
             + G  + A +L ++M+ M
Sbjct: 442 LCSAGNLKEALSLFDQMVKM 461



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 151/351 (43%), Gaps = 38/351 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++  L++++     + +T+   +  L K  + E+A  LF+ +  +G+  +V +Y+ L+
Sbjct: 346 AYRLLSLMKERGLVPDQ-RTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLI 404

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y + G +DEA      M S  +C P+ YT++ LI              +  +M  +G+
Sbjct: 405 DGYCKVGKVDEAGCLFEKMLS-KNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGL 463

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + +  T+N +I    K   F++       M+ SG   P   T N+ I  Y ++G +++ E
Sbjct: 464 KPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGE-KPVARTYNAFIEVYCSAGKVQEAE 522

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGM----YDKMRSVMD----------------F 316
               +    GV  D  T   L K+YG+ G+    +D ++S+ D                 
Sbjct: 523 DMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQL 582

Query: 317 MQKRFFFPTVVTYNI-VIETFGK--AGHIEKMEEY------FKKMKHRGMKPNSITYCSL 367
             KR+         +  +  FG     ++ KM E+      F++M+  G  P+S  Y  L
Sbjct: 583 FDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKL 642

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA------YGQAGDV 412
           +S   K   +     +L Q++   +      FN +IS       YG+A ++
Sbjct: 643 ISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANI 693



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 143/407 (35%), Gaps = 110/407 (27%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  + + A ++F  L  ++   A    ++ L+    K  + ++A  LFE MLS  
Sbjct: 369 IDFLCKSNRVEEARRLFDSL-TEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKN 427

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+   + AL+     +G L EA S  + M  +   KP VYT++ILI    K   FD  
Sbjct: 428 CSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMG-LKPTVYTFNILIGRMLKQGDFDDA 486

Query: 205 EKILAEM-------------SYLGIECSA----------------------VTYNTIIDG 229
            K L +M             +++ + CSA                       TY ++I  
Sbjct: 487 HKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKA 546

Query: 230 YGKA----KKFEEMESSFSAMVESGGCHPDIFTLNSMI------------------SAYG 267
           YGK       F+ ++S F A      C P   T  S+I                   +  
Sbjct: 547 YGKLGLTYSAFDVLKSMFDA-----DCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVS 601

Query: 268 NSGNIEKMEKW-----------YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           N G++     W           + E    G   D +    L     +         ++D 
Sbjct: 602 NFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQ 661

Query: 317 MQKRFFFPTVVTYNIVI------ETFGKAGHI---------------------------- 342
           MQK    P+ + +N VI      + +G+A +I                            
Sbjct: 662 MQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGE 721

Query: 343 -EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            E+    FKK++  G   + I +  L+    K GL+ +   +  ++E
Sbjct: 722 TERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEME 768



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 1/154 (0%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C PD   Y  LI    K     +  K+L +M   GI  S + +N +I    K +K+ E  
Sbjct: 632 CTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAA 691

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           +    M+ SG   P +    ++I      G  E+    + +    G   D     IL   
Sbjct: 692 NIVEDMICSGH-SPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDG 750

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             + G+ ++   + + M+K     +  TY+I+ +
Sbjct: 751 MLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQ 784


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 2/276 (0%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++   ++    T+T ++ +LG+ KQ    + L + M+ DG +P+V  Y  +
Sbjct: 361 VALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRI 420

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + +YG++  L +A +    M+  + C+PD  TY  LI    K    D+   +  +M   G
Sbjct: 421 IHSYGRANYLQDAVNVFKQMQE-AGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAG 479

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +I+  GKA         F  MV+  GC P++ T N MI+    + N E  
Sbjct: 480 LTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDE-GCVPNLVTYNIMIALQAKARNYEIA 538

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K Y +    G + D  T  I+ +  G  G  ++   +   MQK+ + P    Y ++++ 
Sbjct: 539 LKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDL 598

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +GK+G+++K  E++  M   G+KPN  T  SL+SA+
Sbjct: 599 WGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAF 634



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 133/267 (49%), Gaps = 1/267 (0%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K +   + D +TY+ +I    +  +F  I K+L +M   G + + VTYN II  YG+A 
Sbjct: 369 LKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRAN 428

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             ++  + F  M E+G C PD  T  ++I  +  SG ++     Y +    G+  D  T 
Sbjct: 429 YLQDAVNVFKQMQEAG-CEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTY 487

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +++    G+AG  +    +   M      P +VTYNI+I    KA + E   + ++ M+ 
Sbjct: 488 SVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQ 547

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +P+ +TYC ++      G + + + I  +++  + + D P +  ++  +G++G+V+K
Sbjct: 548 SGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQK 607

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
             E +  M +    P+  T  +++ A+
Sbjct: 608 AWEWYHAMLKAGLKPNVPTCNSLLSAF 634



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 100 IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159
           IF  ++++ W       +  L+ + GK    ++A   +  ML  GLKP+V    +L+SA+
Sbjct: 576 IFIEMQKKNWVPDE-PVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAF 634

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            +   L +A+  +  M +    KP + TY++L+  CT     D+
Sbjct: 635 LRVHQLSDAYQLLQSMLTFG-LKPSLQTYTLLLSCCTDAQTNDM 677


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 119

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 120 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             MV S  C PD+ T N++I  +     +E+  + + E +  G+  +  T NIL +   +
Sbjct: 180 EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG  D  + +   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 239 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 298

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  MK
Sbjct: 299 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 358

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E   +P++  + T+I+A    G  EA+  L  +M
Sbjct: 359 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 392



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 150/318 (47%), Gaps = 2/318 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + M++ G +P +  Y  +V+   + G  D AF+ +N M+     +P V  Y+ +I   
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIYNTIIDGL 61

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E    +PD
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPD 120

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           +FT +++I A+   G + + EK Y+E     +   I T + L   +      D+ + + +
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
           FM  +  FP VVTYN +I+ F K   +E+  E F++M  RG+  N++TY  L+    +AG
Sbjct: 181 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 240

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                  I +++ +  V  +   +N ++    + G +EK   +F  ++     P   T+ 
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 300

Query: 436 TMIQAYNALGMTEAAQNL 453
            MI+     G  E   +L
Sbjct: 301 IMIEGMCKAGKVEDGWDL 318



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 36/279 (12%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+PD+ TY +++    K    DL   +L +M    +E   + YNTIIDG  K K  ++  
Sbjct: 12  CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 71

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           + F  M E+ G  P++ T +S+IS   N G      +W                      
Sbjct: 72  NLFKEM-ETKGIRPNVVTYSSLISCLCNYG------RWS--------------------- 103

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
                  D  R + D ++++   P V T++ +I+ F K G + + E+ + +M  R + P+
Sbjct: 104 -------DASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY SL++ +     + +   +   + +     D   +N +I  + +   VE+  E+F 
Sbjct: 156 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 215

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            M +R  V + +T+  +IQ     G  + AQ +  +M++
Sbjct: 216 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 254



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 35/282 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +  +A  L++ M+   + PS+  Y++L++ +     LDEA      M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV TY+ LIK   K+ R +   ++  EMS  G+  + VTYN +I G  +A  
Sbjct: 183 VS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 241

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            +  +  F  MV  G                                     P I+T N 
Sbjct: 242 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 301

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MI     +G +E     +   +L GVK D+   N +   + R G  ++  ++   M++  
Sbjct: 302 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 361

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
             P    YN +I    + G  E   E  K+M+  G   ++ T
Sbjct: 362 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 403



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 65/147 (44%)

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +++D M  +   P +VTY +V+    K G  +       KM+   ++P  + Y +++   
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   +    ++ +++E   +  +   ++ +IS     G       L   M ER   PD 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
            TF+ +I A+   G    A+ L ++M+
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMV 148


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 177
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 178 ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYST 122

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I A
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 177/377 (46%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA + I++MK
Sbjct: 50  YSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMK 109

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 110 T-AGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 168

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 169 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 224

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 225 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 284

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
             G++ + + Y +++ AY +AGL+     +L ++++ D I  DT     I++  G+    
Sbjct: 285 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIH--ILAGAGRIEEA 342

Query: 409 ---------AGDV------EKMGELFLTMKERHCV-------------PDNITFATMIQA 440
                    AG+V      E+M  LF   K+   V             PD+   A ++ A
Sbjct: 343 TYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNA 402

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   + A ++  +M
Sbjct: 403 YGKLHELDKANDVYMEM 419



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 10  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 70  FSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYV 128

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 129 ENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 188

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 189 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 249 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 283



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 162/376 (43%), Gaps = 47/376 (12%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 66  AISIFSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLL 124

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 125 TMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 184 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 242

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 243 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQVLYQTMIV 300

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H    P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 301 AYERAGLVA----HAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 356

Query: 395 DTPFFN-----------------------------------CIISAYGQAGDVEKMGELF 419
           D   F                                     +++AYG+  +++K  +++
Sbjct: 357 DITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVY 416

Query: 420 LTMKERHCV-PDNITF 434
           + M+E  C+  D + F
Sbjct: 417 MEMQEVGCIFSDEVHF 432



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 83/174 (47%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
               K    F ++K  G  P+ + Y ++++ + KA L  +  +++ +++ + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 191/436 (43%), Gaps = 74/436 (16%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           ++ Q  Y AR   +  ++ +  +  Q +QA  LF  M     KP  D+Y +L+ A+ ++G
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG 60

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
               A + + DM   +   P   TY+ +I +C     +    ++  +M+  G+    VT+
Sbjct: 61  QWRWAINIMEDMLRAA-IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTH 119

Query: 224 NTIIDG------YGKA-KKFEEMESS----------------------------FSAMVE 248
           N ++        Y KA   FE M+ +                            F++M E
Sbjct: 120 NIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE 179

Query: 249 -SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
               C PD+ T  S++ +Y   G +E  +  ++     GVK +I   N L  +Y   GM+
Sbjct: 180 RRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMH 239

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +  ++ + ++K    P +V+Y  ++  +G++   EK  E F KMK    KPN ++Y +L
Sbjct: 240 REALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNAL 299

Query: 368 VSAYSKAGL-----------------------------------IMKVDSILRQVENSDV 392
           + AY  AG+                                   I ++++IL    +  +
Sbjct: 300 IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 451
            L+T  +N  I +Y   GD EK  EL+ +M+E +  PD +T+  +I   + LG  TE+ +
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLR 419

Query: 452 NLENKMIAMKENSGKK 467
             E+ M+  K +S K+
Sbjct: 420 FFED-MVDSKVSSTKE 434



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 170/370 (45%), Gaps = 33/370 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY-----GQSGLLDEAFS 170
           T   ++  L    Q  +A   FE+M   G   + D +T  +  +     GQ G   E F+
Sbjct: 118 THNIVLSALKNGAQYSKAISYFEIM--KGANVTSDTFTLNIIIHCLVKIGQCGEAIELFN 175

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           ++ + ++   C PDV TY+ ++ S   + + +  + I   M   G++ + V YN+++  Y
Sbjct: 176 SMRERRT--KCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAY 233

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
                  E  + F+ +++  G  PDI +  S+++AYG S   EK  + +N+      K +
Sbjct: 234 ASRGMHREALAIFN-LIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPN 292

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             + N L  +YG AGM  +   ++  M+K    P VV+ + ++   G+   I ++E   +
Sbjct: 293 KVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILE 352

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
             + RG+  N++ Y S + +Y   G   K   +   +  S+V  D   +N +IS   + G
Sbjct: 353 AARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLG 412

Query: 411 -----------------DVEKMGEL------FLTMKERHCVPDNITFATMIQAYNALGMT 447
                               K G+L      F +MK+  C PD +T+ T+IQAYNA G  
Sbjct: 413 KYTESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGW 472

Query: 448 EAAQNLENKM 457
           + A +L  +M
Sbjct: 473 KRAWDLFKEM 482



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 18/357 (5%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL IF L+++    +    ++T L+   G+  QPE+A  +F  M  +  KP+   Y AL+
Sbjct: 242 ALAIFNLIKKNG-LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +G+L EA   +++M+     +PDV + S L+ +C +  +   IE IL      GI
Sbjct: 301 DAYGSAGMLKEAVGLLHEMEK-DGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V YN+ I  Y     +E+    +++M ES    PD  T N +IS     G   +  
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESN-VKPDAVTYNILISGSSKLGKYTESL 418

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +++ +     V + + +         + G   +  S    M+K   FP V+TY  +I+ +
Sbjct: 419 RFFEDM----VDSKVSST--------KEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAY 466

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G  ++  + FK+M+  G+ P++I   SL+ A++K G   +V  ++  ++   + L+ 
Sbjct: 467 NAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQ 526

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +  II++     D +   E+   +        +I+  T+    N LG     +N+
Sbjct: 527 KSYFEIIASCTMIRDWKTASEMIEYLDSS---LSSISVGTLNHVLNFLGKCGKTENM 580


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 163/330 (49%), Gaps = 2/330 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  + E+A  LF+ ML  G++P V +YT++++   + G +  AF   ++M
Sbjct: 260 TYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEM 319

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P+ YTY  LI    K       E ++ +M   G++ + V +NT++DGY K   
Sbjct: 320 TE-RRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGM 378

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       +++  G   D FT N + S +  S   E+ ++        GV  ++ + +
Sbjct: 379 IDE-ALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFS 437

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y +   + + R +   M+K+   P+VVTYN  IE + K G +E+  +   +M+ R
Sbjct: 438 ILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQER 497

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++ TY SL+     +G + +   +  ++    +  +   +  IIS   + G  ++ 
Sbjct: 498 GLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEA 557

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALG 445
            +L+  M +   VPD+  ++++I + + +G
Sbjct: 558 FKLYDEMNKEGIVPDDGIYSSLIASLHKVG 587



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 10/341 (2%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDMK 176
           V+ G CK+ E  +A  L + ++  G KPSV  Y  L++ Y      G ++E  S +   K
Sbjct: 194 VVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME--K 251

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +V D   +V TY++LI+  ++  + +  EK+  EM   GIE     Y +II+   K    
Sbjct: 252 NVVDY--NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 309

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F  M E     P+ +T  ++I+    +G ++  E   N+    GV  +    N 
Sbjct: 310 KRAFVLFDEMTER-RLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 368

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   Y + GM D+   + + MQ++ F     T NI+   F ++   E+ +     M+ RG
Sbjct: 369 LMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG 428

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + PN +++  L+  Y K     +   + + +E          +N  I  Y + G +E+  
Sbjct: 429 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 488

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +L   M+ER  +PD  T+ ++I    A G  + A  L N+M
Sbjct: 489 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM 529



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 120/294 (40%), Gaps = 49/294 (16%)

Query: 193 KSCTKF-------HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +SC +F          +L  + L +M   GIE    ++  ++DG  K  +    ++    
Sbjct: 154 RSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDE 213

Query: 246 MVESGGCHPDIFTLNSMISA-----------------------------------YGNSG 270
           +V   G  P + T N++++                                    Y  S 
Sbjct: 214 LV-CKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSS 272

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            IE+ EK ++E    G++ D+     +     + G   +   + D M +R   P   TY 
Sbjct: 273 KIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYG 332

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQV 387
            +I    KAG ++  E     M+ +G+  N + + +L+  Y K G+I   +++ +I++Q 
Sbjct: 333 ALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQ- 391

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                 +D    N I S + ++   E+   L LTM+ER   P+ ++F+ +I  Y
Sbjct: 392 --KGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIY 443



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           MV+SG     + +  +++      G + + +   +E    G K  + T N L   Y    
Sbjct: 179 MVDSG-IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIK 237

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
               +  ++  M+K      V TY ++IE + ++  IE+ E+ F +M  +G++P+   Y 
Sbjct: 238 DVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYT 297

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           S+++   K G + +   +  ++    ++ +   +  +I+   +AG+++    +   M+ +
Sbjct: 298 SIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK 357

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               + + F T++  Y   GM + A  L+N M
Sbjct: 358 GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 389



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 90/193 (46%)

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A   SGN+E   ++  +    G++  + +   +     + G   + +++MD +  + F P
Sbjct: 162 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 221

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           +V+TYN ++  + +   +  + E    M+   +  N  TY  L+  YS++  I + + + 
Sbjct: 222 SVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF 281

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++    +  D   +  II+   + G++++   LF  M ER  VP+  T+  +I      
Sbjct: 282 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 341

Query: 445 GMTEAAQNLENKM 457
           G  +AA+ + N M
Sbjct: 342 GEMKAAEMMVNDM 354



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTA 154
           AL++  +++Q+ +       FT  ++  G C+  + E+A  L   M   G+ P+V  ++ 
Sbjct: 382 ALRLQNIMQQKGF---EIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 438

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+  Y +     EA      M+      P V TY+  I+   K  + +   K++ EM   
Sbjct: 439 LIDIYCKEQNFAEARRLFKVMEKKGKA-PSVVTYNAFIERYCKKGKMEEAYKLINEMQER 497

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+     TY ++IDG   +   +     F+ M +  G + ++ T   +IS     G  ++
Sbjct: 498 GLMPDTYTYTSLIDGERASGNVDRALELFNEMPQL-GLNRNVVTYTVIISGLSKDGRADE 556

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAG-MYDKMRSVMDFMQ 318
             K Y+E N  G+  D    + L  S  + G +   + +V+D ++
Sbjct: 557 AFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLENVVDRIE 601


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 147/287 (51%), Gaps = 3/287 (1%)

Query: 86  DEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           ++ +KQ +   +AL  F  L++Q  ++    T+T ++ +LG+ +Q    + L   M+ DG
Sbjct: 350 NQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDG 409

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P+V  Y  L+ +YG++  L+EA S  + M+  + C+PD  TY  LI    K    D+ 
Sbjct: 410 CQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQE-AGCQPDRVTYCTLIDIHAKAGFLDVA 468

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  +M    +     TY+ II+  GKA         F  MV+  GC P++ T N MI+
Sbjct: 469 LHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQ-GCVPNLVTYNIMIA 527

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               + N     + Y +    G + D  T +I+ +  G  G  ++  ++   M+++ + P
Sbjct: 528 LQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVP 587

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
               Y ++++ +GK G++EK  E+++ M + G+ PN  T  SL+SA+
Sbjct: 588 DEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAF 634



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           +K  +  K D +TY+ ++    +  +F  I K+LAEM   G + + VTYN +I  YG+A 
Sbjct: 369 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRAN 428

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E  S F  M E+G C PD  T  ++I  +  +G ++     Y +     +  D  T 
Sbjct: 429 YLNEAVSVFDRMQEAG-CQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTY 487

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +++    G+AG       +   M  +   P +VTYNI+I    KA +     E ++ M++
Sbjct: 488 SVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQN 547

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +P+ +TY  ++      G + + ++I  +++  + + D P +  ++  +G+ G+VEK
Sbjct: 548 AGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEK 607

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             E +  M      P+  T  +++ A+  +     A NL   M+ +
Sbjct: 608 SWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRL 653



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 145/342 (42%), Gaps = 18/342 (5%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + +  AL+++  + Q   +Q    T++ +M +LG C   E+A  +F  M      P  
Sbjct: 531 KARNYPTALELYRDM-QNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDE 589

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  LV  +G+ G +++++     M +   C P+V T + L+ +  + HR      +L 
Sbjct: 590 PVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLC-PNVPTCNSLLSAFLRVHRLSDAYNLLQ 648

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M  LG++ S  TY  ++    +A+   +M      M  +G  HP    L SM +A  + 
Sbjct: 649 SMLRLGLQPSLQTYTLLLSCCTEARSSFDMGFCGELMAVTG--HPAHMFLLSMPAAGPDG 706

Query: 270 GNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV- 327
            N+ + + K+ +  +    ++    ++ +     ++G+ ++  SV +   ++  +P  V 
Sbjct: 707 QNVRDHVSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVR 766

Query: 328 ----TYNIVIETFGKAGHI-----EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                Y ++   F   G         +  + ++M   G  P+ I    +V+ + +   + 
Sbjct: 767 EKSSCYWLINLHFMSDGTAVTALSRTLAWFHREMLVSGTVPSRI---DIVTGWGRRSRVT 823

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
               + + V+    I   PFF    ++    G  E +G   L
Sbjct: 824 GASLVRQAVQELLHIFSFPFFTENGNSGCFVGRGEPLGRWLL 865


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 159/344 (46%), Gaps = 3/344 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTIN 173
           + +T ++  L +  + E+A  LF+ +  +G+ P+   Y  ++  YG+ G       + + 
Sbjct: 184 RAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLA 243

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           DM++ +  +PD +T S +I +  +    D       ++   G     VTYN ++  +GKA
Sbjct: 244 DMRA-AGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKA 302

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             + E       M E  GC PD  T N +  +Y  +G  ++  K  +     G+  +  T
Sbjct: 303 GNYTEALRVLREM-EDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFT 361

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +  +YG AG  D+  ++ D M+K  F P   TYN+V+   GK      M E   +M 
Sbjct: 362 YNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMS 421

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PN +T+ +L++   K G+   V  +L  +++  V L    +N +I AYG+ G   
Sbjct: 422 RSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRA 481

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              +++  M      P   T+  ++   +  G   AA+++ +KM
Sbjct: 482 NAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKM 525



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 150/305 (49%), Gaps = 4/305 (1%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           +DG  P    +  +V A G+ G  D   + +++M      + DV  Y+ ++ + ++  R+
Sbjct: 144 ADGPAP----FEMVVRALGREGRHDAVCALLDEMPLPPGARLDVRAYTTVLHALSREGRY 199

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +   ++  E+   G+  + VTYN ++D YG+  +      +  A + + G  PD FT ++
Sbjct: 200 ERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTAST 259

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+A G  G +++   ++ +    G    + T N L + +G+AG Y +   V+  M+   
Sbjct: 260 VIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAG 319

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  VTYN +  ++ +AG  ++  +    M  +G+ PN+ TY ++++AY  AG + +  
Sbjct: 320 CKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEAL 379

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++  +++ +  I  T  +N ++   G+      M E+   M    C P+ +T+ T++   
Sbjct: 380 ALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVC 439

Query: 442 NALGM 446
              GM
Sbjct: 440 GKRGM 444



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 171/376 (45%), Gaps = 52/376 (13%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A+   + M+  GL P+   Y  +++AYG +G +DEA +  + MK  +   P   TY++
Sbjct: 341 QEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKK-NGFIPYTNTYNL 399

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES- 249
           ++    K  RF  + ++L EMS  G   + VT+NT++   GK      MES  + ++E  
Sbjct: 400 VLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGK----RGMESYVTRVLEGM 455

Query: 250 GGCHPDIF--TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
             C  ++   T N++I AYG  G+     K Y+E    G    + T N L     R G +
Sbjct: 456 KSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDW 515

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-------------------------- 341
              RS++  M+   F P  ++Y+++++   K G+                          
Sbjct: 516 TAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTL 575

Query: 342 ---------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
                    +E +E  F+++K RG KP+ +   S++S Y+K GL  K   +   +E   +
Sbjct: 576 VIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGL 635

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV---------PDNITFATMIQAYNA 443
             D   +N ++  Y ++ +  +  ++   ++              PD +++ T+I  +  
Sbjct: 636 SPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCK 695

Query: 444 LGMTEAAQNLENKMIA 459
            G+ + AQ + ++MIA
Sbjct: 696 EGLIKEAQRVLSEMIA 711



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 174/389 (44%), Gaps = 12/389 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ ++   L++ G + +      R  T+  L+ + GK       + + E M S  ++   
Sbjct: 406 KKSRFAAMLEMLGEMSRSGCTPNRV-TWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCR 464

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           D Y  L+ AYG+ G    AF   ++M + +   P + TY+ L+   ++   +     I++
Sbjct: 465 DTYNTLICAYGRCGSRANAFKMYDEM-TAAGFAPCLTTYNALLNVLSRQGDWTAARSIVS 523

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M   G + + ++Y+ ++  + K      +E+     V  G   P    L +++ A    
Sbjct: 524 KMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEA-IEKEVYQGNIFPSWVILRTLVIANFKC 582

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +E +E+ + E    G K D+  LN +   Y + G+Y K   + + +++    P ++TY
Sbjct: 583 RRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITY 642

Query: 330 NIVIETFGKAGHIEKMEEYFKKMK---------HRGMKPNSITYCSLVSAYSKAGLIMKV 380
           N +++ + K+    + E+   +++          + +KP+ ++Y ++++ + K GLI + 
Sbjct: 643 NSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEA 702

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L ++    V      ++ ++  Y       +  E+   M +R   P  +T+  ++ +
Sbjct: 703 QRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQRKLKPMELTYRRVVDS 762

Query: 441 YNALGMTEAAQNLENKMIAMKENSGKKLI 469
           Y      E A++    +     NS +KL+
Sbjct: 763 YCRAKRYEDARDFLAVVAEADTNSDEKLL 791


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 5/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L    +  +A  L + ML  G +PSV  YT L+ A  +S    +A   +++M
Sbjct: 147 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 206

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P++ TY+++I    +  R D   + L  +S  G +   V+Y T++ G   AK+
Sbjct: 207 RA-KGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 265

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E++E  F+ M+E   C P+  T + ++  +   G +E+  +   + +  G  A+    N
Sbjct: 266 WEDVEELFAEMMEKN-CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN 324

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +  + G  D     ++ M      P  ++Y  V++   +A   E  +E  K+M  +
Sbjct: 325 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN +T+ + +    + GLI +   ++ Q+      ++   +N +++ +   G V+  
Sbjct: 385 NCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSA 444

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF +M    C P+ IT+ T++         +AA  L  +M+
Sbjct: 445 LELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEML 484



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L +   S G  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTL 119

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +    ++ + D   +++A M    +   A TY  II G     +  E  S    M+  G 
Sbjct: 120 VAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG- 175

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P + T   ++ A   S    +  +  +E    G   +I T N++     R G  D  R
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             ++ +    F P  V+Y  V++    A   E +EE F +M  +   PN +T+  LV  +
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G++ +   +L Q+       +T   N +I+   + G V+   +    M    C PD 
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 355

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           I++ T+++        E A+ L  +M+
Sbjct: 356 ISYTTVLKGLCRAERWEDAKELLKEMV 382



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 146/341 (42%), Gaps = 7/341 (2%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           TKL+  L +  +   A+ +       G    V  Y  LV+ Y + G LD A   I  M  
Sbjct: 82  TKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV 141

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                PD YTY+ +I+      R      +L +M + G + S VTY  +++   K+  F 
Sbjct: 142 A----PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG 197

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +       M  + GC P+I T N +I+     G ++   ++ N  +  G + D  +   +
Sbjct: 198 QAMEVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTV 256

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K    A  ++ +  +   M ++   P  VT+++++  F + G +E+  +  ++M   G 
Sbjct: 257 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 358 KPNSITYCSLV-SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             N+ T C++V +   K G +      L  + +     DT  +  ++    +A   E   
Sbjct: 317 AANT-TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           EL   M  ++C P+ +TF T I      G+ E A  L  +M
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 19/306 (6%)

Query: 102 GLLRQQQWYQAR----------CQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R ++W  A+          C     TF   + +L +    EQA++L E M   G + 
Sbjct: 364 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV 423

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           ++  Y ALV+ +   G +D A      M     CKP+  TY+ L+       R D   ++
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTTLLTGLCNAERLDAAAEL 479

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           LAEM       + VT+N ++  + +    +E       M+E G C P++ T N+++    
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG-CTPNLITYNTLLDGIT 538

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           N  N E+  +  +     GV  DI T + +     R    ++   +   +Q     P  V
Sbjct: 539 NDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAV 598

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            YN ++    K  + +   ++F  M   G  PN +TY +L+   +    + +   +LR++
Sbjct: 599 IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 658

Query: 388 ENSDVI 393
            +  V+
Sbjct: 659 CSRGVL 664



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/384 (18%), Positives = 164/384 (42%), Gaps = 41/384 (10%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K+W+   ++F  + ++        TF  L+    +    E+A  + E M   G   +  +
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNE-VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTL 322

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--------- 202
              +++   + G +D+AF  +N+M S   C PD  +Y+ ++K   +  R++         
Sbjct: 323 CNIVINTICKQGRVDDAFQFLNNMGSYG-CSPDTISYTTVLKGLCRAERWEDAKELLKEM 381

Query: 203 -----------------------LIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                                  LIE+   ++ +MS  G E + VTYN +++G+    + 
Sbjct: 382 VRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRV 441

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F +M     C P+  T  ++++   N+  ++   +   E        ++ T N+
Sbjct: 442 DSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G+ D+   +++ M +    P ++TYN +++      + E+  E    +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ +TY S++   S+   + +   +   V++  +      +N I+ A  +  + +   
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           + F  M    C+P+ +T+ T+I+ 
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEG 641


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 201/457 (43%), Gaps = 52/457 (11%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWY 110
           L K  R E  +KN E    S          V+  +D   K +    A K+F     +Q  
Sbjct: 408 LLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVV--IDGLCKAQMLPDACKVF-----EQMV 460

Query: 111 QARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q  C     T+T L+    K  + ++A  L +VML+ G +P+   Y ++V  + +  +++
Sbjct: 461 QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMIN 520

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA   I  M+    C+P ++ ++ L+       R +   ++L EM+  G     + Y ++
Sbjct: 521 EAKEVIAQMRE-RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSL 579

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE------------- 273
           ID      +  E    F +M+E G C PD  T  ++I  +   GN+E             
Sbjct: 580 IDLLFSTGRVPEARHVFDSMIEKG-CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG 638

Query: 274 ----------------KMEKW------YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
                           K+E+       Y+     G+K +  T N+L     + G  D+  
Sbjct: 639 VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAF 698

Query: 312 SVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           S+  + ++K    PT+V+Y I+I+  GKAG + +    F++M  RG+ P   TY SL+ +
Sbjct: 699 SLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYS 758

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            +KAG I +   ++  +    V  D   ++ +I+    +  V+   ++F  M +R C P+
Sbjct: 759 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 818

Query: 431 NITFATMIQAYNALGMT---EAAQNLENKMIAMKENS 464
            +T+  + + + A G     EA +   ++ +AM+  S
Sbjct: 819 EVTYKVLRRGFRAAGRALDLEAVKQHFSQGVAMEAGS 855



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 8/339 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT+  L+    +  + + A  LF+++ S G KP+   YT ++     +  ++EA      
Sbjct: 300 QTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEA------ 353

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            K+  D   DV +Y+ +IK      R D   ++  ++   G   + V Y  +IDG  KA 
Sbjct: 354 -KAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAG 412

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+   +F  M  S  C P   T   +I     +  +    K + +    G   D  T 
Sbjct: 413 RIEDGLKNFEDMSGSS-CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITY 471

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   + +A   D+ R ++D M  +   PT VTY  ++  F K   I + +E   +M+ 
Sbjct: 472 TTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE 531

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG +P    + SL+S Y   G   +   +L ++       D   +  +I      G V +
Sbjct: 532 RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPE 591

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              +F +M E+ C PD +T+ T+IQ ++ +G  EAA  +
Sbjct: 592 ARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 630



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 36/378 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T ++  L   K+ ++A  LFE + + G  P+V  YTA++    ++G +++      DM
Sbjct: 365 SYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDM 424

Query: 176 KSVS----------------------------------DCKPDVYTYSILIKSCTKFHRF 201
              S                                   C PD  TY+ LI   +K  + 
Sbjct: 425 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 484

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           D   K+L  M   G E +AVTY +I+ G+ K     E +   + M E G C P +F   S
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG-CEPGLFIFTS 543

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++S Y + G  E+  +   E    G   D+     L       G   + R V D M ++ 
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +TY  +I+ F K G++E   E  + M   G+ P+   Y SL+  Y K   + +  
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQA 440
            +  ++  S +  +   FN ++    + G  ++   LF  M E+  VP   +++  +I  
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 441 YNALGMTEAAQNLENKMI 458
               G    A +   +MI
Sbjct: 724 LGKAGRVSEAFSQFQEMI 741



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 165/380 (43%), Gaps = 29/380 (7%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++ Y+   +    L+  L K  + ++A+ +++ +++  +  S   Y +L+  Y + G +D
Sbjct: 222 ERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVD 281

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +    +  M    D  PD+ TY+IL+   ++ +R D   ++   +S  G + +A TY TI
Sbjct: 282 DGLKLLLQMVE-CDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTI 340

Query: 227 IDGYGKAKKFEEMESSFSAMVE----------------------------SGGCHPDIFT 258
           I G   A++ EE ++ F   ++                            + GC P++  
Sbjct: 341 IQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVA 400

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
             ++I     +G IE   K + + +         T  ++     +A M      V + M 
Sbjct: 401 YTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMV 460

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           ++   P  +TY  +I+ F KA  +++  +    M  +G +P ++TY S+V  + K  +I 
Sbjct: 461 QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMIN 520

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   ++ Q+           F  ++S Y   G  E+  ++   M  R C PD I + ++I
Sbjct: 521 EAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLI 580

Query: 439 QAYNALGMTEAAQNLENKMI 458
               + G    A+++ + MI
Sbjct: 581 DLLFSTGRVPEARHVFDSMI 600



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 150/334 (44%), Gaps = 10/334 (2%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +V+ G CK  + ++A  LF  M S G +P++  Y  ++S       +DEA+   N M   
Sbjct: 25  IVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID- 83

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           + C+PDV  ++ LI    K  +   +  +L   +          Y ++I GY KA    +
Sbjct: 84  NGCEPDVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAG---D 139

Query: 239 MESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +++ F  + E  + GC PD      +I      G +++  + +      G   D  T   
Sbjct: 140 LDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMT 199

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L ++    G  D+   +   M +R + P +   + +I    KAG +++  E ++ +  + 
Sbjct: 200 LIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKK 259

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +  + + Y SL+  Y K G +     +L Q+   D   D   +N +++ + +A  ++   
Sbjct: 260 VATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDAL 319

Query: 417 ELFLTMKERHCVPDNITFATMIQA-YNALGMTEA 449
           ELF  +    C P+  T+ T+IQ  Y+A  M EA
Sbjct: 320 ELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEA 353



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 43/314 (13%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           ++EA   + +M + +   PDV   +I++    K  + D   ++  EM  +G E + V+YN
Sbjct: 1   MEEALDCLKEMHT-TGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYN 59

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGC-------------------------------- 252
           T+I G     K +E    F++M+++G C                                
Sbjct: 60  TVISGLASIDKMDEAYKFFNSMIDNG-CEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK 118

Query: 253 --HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD+F   S+I  Y  +G+++   K   E    G   D     +L     + G  D+ 
Sbjct: 119 RFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEA 178

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             + + M+K       VT+  +IE     G +++  E +++M  RG +P      SL+ A
Sbjct: 179 YELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFA 238

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             KAG + + + I + V    V      +N ++  Y + G V+   +L L M E    PD
Sbjct: 239 LCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPD 298

Query: 431 NITFATMIQAYNAL 444
                  IQ YN L
Sbjct: 299 -------IQTYNIL 305



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 37/251 (14%)

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EM   G+    V  N +++G  KA+K ++    F  M  S GC P I + N++IS   
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEM-PSMGCEPTIVSYNTVISGLA 66

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
           +   I+KM++ Y  FN                            S++D   +    P V+
Sbjct: 67  S---IDKMDEAYKFFN----------------------------SMIDNGCE----PDVI 91

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            +  +I  F KAG  +       +   R  +P+   Y S++  Y KAG +     IL ++
Sbjct: 92  AFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEM 150

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             +  I D   +  +I    + G V++  ELF  M++  C+ D +TF T+I+A +  G  
Sbjct: 151 LAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKL 210

Query: 448 EAAQNLENKMI 458
           + A  L  +MI
Sbjct: 211 DEACELYREMI 221


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 3/290 (1%)

Query: 85  LDEAIK-QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           ++E +K QK+  LALK F   ++Q+ Y+    T+T ++ ++G+ +  E  S L + M  +
Sbjct: 37  INEVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRRE 96

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G +P V  Y  L+ AYG++  L EA      M+    C PD  TY  L+   +K    D 
Sbjct: 97  GCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQE-EGCSPDRVTYCTLVDLHSKAGFHDN 155

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +  +M   G +    TY+ II   GKA K  E    F  MVE G   P + T N +I
Sbjct: 156 AMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFA-PSLVTYNIII 214

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                SGN     K YN+    G   D  T +I+ +  G+ G   +   + + M++  + 
Sbjct: 215 DLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWV 274

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           P    Y ++++ +GKA + E+  E+++KM   G+ PN     SL+ +Y +
Sbjct: 275 PDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLR 324



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 1/260 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K DV TY+ +I    +   F+   ++L EM   G E   VTYN +I  YG+A    E   
Sbjct: 64  KHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMR 123

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M E G C PD  T  +++  +  +G  +     Y +    G + D  T +++    
Sbjct: 124 IFYQMQEEG-CSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCL 182

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG   +   + + M +R F P++VTYNI+I+   K+G+     + +  M+  G  P+ 
Sbjct: 183 GKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDR 242

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++    + G + + + +  ++E +  + D P +  ++  +G+A + E+  E +  
Sbjct: 243 VTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQK 302

Query: 422 MKERHCVPDNITFATMIQAY 441
           M +    P+     +++ +Y
Sbjct: 303 MLDSGLTPNVQISNSLLGSY 322



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T+I   G+A+ FE        M   G C P + T N +I AYG +  + +
Sbjct: 62  GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREG-CEPCVVTYNRLIHAYGRANFLGE 120

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             + + +    G   D  T   L   + +AG +D    +   MQ+  F P   TY+++I 
Sbjct: 121 AMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIH 180

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GKAG + +  + F++M  RG  P+ +TY  ++   +K+G  +    +   ++++    
Sbjct: 181 CLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHP 240

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   GQ G +++   +F  M++   VPD   +  M+  +      E A    
Sbjct: 241 DRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWY 300

Query: 455 NKMI 458
            KM+
Sbjct: 301 QKML 304



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 9/266 (3%)

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGG 251
           C    + +     L  +S +    SA   N ++      G A KF      F    E  G
Sbjct: 9   CNILRQLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKF------FDWAKEQEG 62

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              D+ T  +MI   G + N E   +   E    G +  + T N L  +YGRA    +  
Sbjct: 63  YKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAM 122

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +   MQ+    P  VTY  +++   KAG  +   + ++KM+  G +P++ TY  ++   
Sbjct: 123 RIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCL 182

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            KAG + +   +  ++           +N II    ++G+     +L+  M++    PD 
Sbjct: 183 GKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDR 242

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
           +T++ M++    +G  + A+ + N+M
Sbjct: 243 VTYSIMMEVLGQIGHLQEAELMFNEM 268



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           M GK +  E+A   ++ ML  GL P+V +  +L+ +Y +    D AF  I  MK+     
Sbjct: 286 MWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWG-LV 344

Query: 183 PDVYTYSILIKSCT 196
           P + T++IL+ SCT
Sbjct: 345 PTLQTHTILLSSCT 358


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 7/357 (1%)

Query: 102 GLLR-QQQWYQARCQT--FTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
           G LR ++Q   A C +   T  +++ G CK+   E+     + M ++G +P    + +LV
Sbjct: 264 GALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLV 323

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +   + G +  A   ++ M       PD++TY+ LI    K    +   +IL +M     
Sbjct: 324 NGLCRIGHVKHALEILDVMLQ-EGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF 382

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + VTYNT+I    K  + EE  +  + ++ S G  PD+ T NS+I     + N     
Sbjct: 383 SPNTVTYNTLISTLCKENQVEE-ATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + + E    G   D  T N+L  S    G  ++  S++  M+       VVTYN +I+ F
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K   IE+ EE F +M+ +G+  N +TY +L+    K   + +   ++ Q+    +  D 
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +N +++ + +AGD++K  ++  TM    C PD++T+ T+I   +  G  E A  L
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRL 618



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 161/349 (46%), Gaps = 3/349 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+I  ++  Q+ +     T+  L+  L K  + E+A  +   M+     P+   Y  L+
Sbjct: 335 ALEILDVM-LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLI 393

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S   +   ++EA + +  + +     PDV T++ LI+     +   L  ++  EM   G 
Sbjct: 394 STLCKENQVEEA-TELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGC 452

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN +ID      + EE  S    M ES GC  ++ T N++I  +  +  IE+ E
Sbjct: 453 HPDEFTYNMLIDSLCSRGRLEEALSLLKEM-ESSGCSRNVVTYNTLIDGFCKNKRIEEAE 511

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + ++E  L G+  ++ T N L     +    ++   +MD M      P   TYN ++  F
Sbjct: 512 EIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYF 571

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +AG I+K  +  + M   G +P+S+TY +L+   SKAG +     +LR V+   ++L  
Sbjct: 572 CRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAP 631

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             +N +I A  +     +   LF  M E+   PD +T+  + +   + G
Sbjct: 632 QTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG 680



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 178/426 (41%), Gaps = 41/426 (9%)

Query: 74  KNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA 133
           +N  PK + +AL    +Q      L +     +Q  +      + +++  LGK       
Sbjct: 68  QNFTPKQLRDALR---RQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSM 124

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             + + M   G +     +  L+ +Y +  L DEA + ++ M+     K D +TY+ L+ 
Sbjct: 125 RRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLN 184

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-------EEM------- 239
                ++  L+E + + M   GI+    T+N +I    +A +        EEM       
Sbjct: 185 VLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSP 244

Query: 240 -ESSFSAMVE-------------------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            E +F+ +++                   + GC     T+N ++  Y   G IE++  + 
Sbjct: 245 DEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFI 304

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E +  G + D  T N L     R G       ++D M +  F P + TYN +I    K 
Sbjct: 305 DEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKL 364

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G +E+  E   +M  R   PN++TY +L+S   K   + +   + R + +  ++ D   F
Sbjct: 365 GEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 424

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I       +     ELF  MK + C PD  T+  +I +  + G  E A +L  +M  
Sbjct: 425 NSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEM-- 482

Query: 460 MKENSG 465
             E+SG
Sbjct: 483 --ESSG 486



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 159/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L +    + A  + +VML +G  P +  Y +L+    + G ++EA   +N M
Sbjct: 318 TFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             + D  P+  TY+ LI +  K ++ +   ++   ++  GI     T+N++I G      
Sbjct: 378 -ILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNN 436

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                  F  M ++ GCHPD FT N +I +  + G +E+      E    G   ++ T N
Sbjct: 437 HRLAMELFEEM-KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYN 495

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + +    ++   + D M+ +     VVTYN +I+   K   +E+  +   +M   
Sbjct: 496 TLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLME 555

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+  TY SL++ + +AG I K   I++ + ++    D+  +  +I    +AG VE  
Sbjct: 556 GLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELA 615

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             L  T++ +  V    T+  +I+A      T  A  L  +M+
Sbjct: 616 SRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMM 658


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 182/403 (45%), Gaps = 37/403 (9%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ +F  ++ Q+ Y AR   +  ++ +  +  Q +QA  LF  M     KP  D+Y +L+
Sbjct: 136 AVYVFCWMKNQENYCARNDIYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLI 195

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +A+ ++GL   A + ++DM   +   P   TY+ ++ +C     +    ++  +M   G+
Sbjct: 196 NAHARAGLWRWAINIMDDMLRAA-IPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGV 254

Query: 217 ECSAVTYNTIIDG------YGKAKKFEEM-------ESSFS------AMVESGG------ 251
               VT+N ++        Y KA  + EM         +F+       +V+ G       
Sbjct: 255 GPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVD 314

Query: 252 -----------CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                      C PD+ T  S+I +Y   G +E  +  ++     GVK +I + N L  +
Sbjct: 315 LLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGA 374

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y   GM+ +   +   +++    P VV+Y  ++  +G++   EK  E F +M+    KPN
Sbjct: 375 YASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPN 434

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+ AY  AG+  +  S+L ++E   +  D    + +++A G+     K+  +  
Sbjct: 435 KVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLE 494

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
             K R    + + + + I +Y + G  E A  L   M+A   N
Sbjct: 495 AAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVN 537



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 156/327 (47%), Gaps = 2/327 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++     C Q E    +F++M+++G+KP++  Y AL+ AY   G+  EAF     +
Sbjct: 332 TYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLL 391

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  +  +PDV +Y+ L+ +  +  + +   ++  EM     + + V+YN +ID YG A  
Sbjct: 392 KQ-NGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGM 450

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E  S    M E  G  PD+ +++++++A G      K++         G++ +I   N
Sbjct: 451 FKEAISLLHEM-EKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYN 509

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               SY   G Y+K   +   M      P  VTYNI+I    K G   +  ++F+ M   
Sbjct: 510 SGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDL 569

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +      Y SL+ +Y K   + + +S    ++ S    D   +  +I AY   G    +
Sbjct: 570 RIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSV 629

Query: 416 GELFLTMKERHCVPDNITFATMIQAYN 442
            +LF  M+    +PD I  +++++A N
Sbjct: 630 WDLFKEMEGNAILPDAIICSSLMEALN 656



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 153/323 (47%), Gaps = 3/323 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A  IF LL+Q    +    ++T L+   G+  QPE+A  +F  M  +  KP+   Y AL+
Sbjct: 384 AFGIFKLLKQNG-LRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALI 442

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +G+  EA S +++M+      PDV + S L+ +C +  +   I+ +L    + GI
Sbjct: 443 DAYGSAGMFKEAISLLHEMEK-DGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGI 501

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V YN+ I  Y     +E+    ++ M+ S   +PD  T N +IS     G   +  
Sbjct: 502 ELNIVAYNSGIGSYLSFGDYEKALKLYATMMASN-VNPDAVTYNILISGLCKLGKYAESL 560

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K++ +   + +    +  + L  SY +     +  S    M+    FP V+TY  +I+ +
Sbjct: 561 KFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAY 620

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G    + + FK+M+   + P++I   SL+ A +K     +V  +++ + +  + L+ 
Sbjct: 621 TDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQ 680

Query: 397 PFFNCIISAYGQAGDVEKMGELF 419
             +  II++     D +   E+ 
Sbjct: 681 KAYFEIIASCSMLRDWKTASEII 703


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 193/420 (45%), Gaps = 15/420 (3%)

Query: 13  TATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKK 72
           T+++ P+   E     + I R      +     E  K L K    E A+++ +K +S+K 
Sbjct: 52  TSSNTPEETGESSASAKTIPRYTKWTPQFARVDEVLKILQKTGNVEAALESWDKSLSAKN 111

Query: 73  YKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQ-QWYQARCQTFTKLMVMLGKCKQPE 131
                   VL  ++      +W+ AL  F  L+ + + Y+    T+  ++ +L   +Q E
Sbjct: 112 IVT-----VLNNIN------RWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLE 160

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            +  L E M   G++P    ++ L++   +    +EA      MKS     PD  TY+ +
Sbjct: 161 LSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKS-EGIVPDEVTYNSV 219

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I    +  R +   ++  ++  +  +   VTY  I + Y +A  ++ +      M +SG 
Sbjct: 220 IDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGS 279

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+   +N+++     +G + + +K +NE    GV     TL+IL + Y R G YD+  
Sbjct: 280 -SPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAF 338

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V + ++   +   V  YN +++   + G +E+ E+  K+MK  G  P+ +TY + ++ Y
Sbjct: 339 EVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTY 398

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PD 430
           +  G++     +  +V   +   DTP F  +I A   AG++E+  ++F  M E  C  PD
Sbjct: 399 ATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPD 458



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 137/275 (49%), Gaps = 1/275 (0%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY++++K      + +L EK++ EM+  GI+    T++T+I+   + ++ EE    F  
Sbjct: 144 YTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFER 203

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +S G  PD  T NS+I  YG  G + +  + Y +   +  K D  T   +   Y RAG
Sbjct: 204 M-KSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAG 262

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
            Y  +  ++  M+     P  V  N ++ T  KAG + + ++ F +M+  G+ P  +T  
Sbjct: 263 DYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLS 322

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            LV  Y++ G   +   +   ++      D   +N ++ A  + G VE+  ++   MK  
Sbjct: 323 ILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA 382

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            C PD++T+ T +  Y   GM + A+ + +K++A+
Sbjct: 383 GCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVAL 417


>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 352

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 168/358 (46%), Gaps = 9/358 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +K  ++  A+++   +R+++    +C     T+T +M     C + E    +F++M+++G
Sbjct: 306 VKDGQYGEAIELLNSMREKR---TQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEG 362

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +KP++  Y AL+ AY   G+  +A      +K  +  +PDV +Y+ L+ +  +  + +  
Sbjct: 363 VKPNIVSYNALLGAYASRGMHADALGIFKLLKQ-NGLRPDVVSYTTLLNAYGRSGQPEKA 421

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +   EM       + V+YN +ID YG A  F+E  S    M E  G  PD+ +++++++
Sbjct: 422 REAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEM-EKDGIPPDVVSISTLLT 480

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A G    I K++         G+K +I   N    SY   G Y K   +   M      P
Sbjct: 481 ACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNP 540

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VTYNI+I    K G   +  ++F+ M    +      Y SL+ +Y K G + + +S  
Sbjct: 541 DAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTF 600

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             ++ S  + D   +  +I AY   G      +LF  M+     PD I  +++++A N
Sbjct: 601 SSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALN 658



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 179/405 (44%), Gaps = 37/405 (9%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           Q A+ +F  ++ Q+ Y AR   +  ++ +  +  Q +QA  LF  M     KP  D+Y +
Sbjct: 136 QHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNS 195

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+ A+ ++G    A + ++DM   +   P   TY+ +I +C     +    ++  +M+  
Sbjct: 196 LIHAHARAGQWRWAINIMDDMLRAA-IPPSRTTYNNVINACGAAGNWKKALELCKKMTRN 254

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-------------------VESGG---- 251
           G+    VT+N ++  +    ++ +  + F  M                   V+ G     
Sbjct: 255 GVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEA 314

Query: 252 -------------CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                        C PD+ T  S++ +Y   G +E  +  ++     GVK +I + N L 
Sbjct: 315 IELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALL 374

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y   GM+     +   +++    P VV+Y  ++  +G++G  EK  E FK+M+    +
Sbjct: 375 GAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCR 434

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN ++Y +L+ AY  AG+  +  S+L ++E   +  D    + +++A G+   + K+  +
Sbjct: 435 PNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTI 494

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
               K R    + + + + I +Y   G    A  L   M+A   N
Sbjct: 495 LEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVN 539



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 153/323 (47%), Gaps = 3/323 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL IF LL+Q    +    ++T L+   G+  QPE+A   F+ M  +  +P++  Y AL+
Sbjct: 386 ALGIFKLLKQNG-LRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALI 444

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AYG +G+  EA S +++M+      PDV + S L+ +C +  +   I+ IL      GI
Sbjct: 445 DAYGSAGMFKEAISLLHEMEK-DGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGI 503

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V YN+ I  Y     + +    ++ M+ S   +PD  T N +IS     G   +  
Sbjct: 504 KLNIVCYNSGIGSYLNFGDYGKALELYAVMMASN-VNPDAVTYNILISGLCKVGKYAESL 562

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K++ +   + +    +  + L  SY + G   +  S    M++    P V+TY  +IE +
Sbjct: 563 KFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAY 622

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G      + FK+M+   ++P++I   SL+ A ++     +V  ++  ++   + L+ 
Sbjct: 623 NDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCIPLNQ 682

Query: 397 PFFNCIISAYGQAGDVEKMGELF 419
             +  II++     D +   E+ 
Sbjct: 683 KAYFEIIASCSMLRDWKTASEII 705



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 37/312 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           + + L+   G+C+Q  +   + E   S G+K ++  Y + + +Y   G   +A      M
Sbjct: 474 SISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVM 533

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            + S+  PD  TY+ILI    K  ++    K   +M  L I  +   Y+++I  Y K  K
Sbjct: 534 MA-SNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGK 592

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E ES+FS+M ESG C PD+ T  +MI AY + G+       + E     V+ D    +
Sbjct: 593 LTEAESTFSSMKESG-CLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICS 651

Query: 296 ILTKSYGRAGMYDKMRSVMDFM--------QKRFF------------------------- 322
            L ++  R   ++++  +M+ M        QK +F                         
Sbjct: 652 SLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSS 711

Query: 323 --FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
               +V T N ++   GK G  E M + F KM          TY  L+      G   K 
Sbjct: 712 LSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKY 771

Query: 381 DSILRQVENSDV 392
             +L+ +E++ V
Sbjct: 772 IEVLQWMEDAGV 783



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 20/254 (7%)

Query: 121 MVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++ G CK  + A  L  FE M+   +  + +VY++L+ +Y + G L EA ST + MK  
Sbjct: 547 ILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKE- 605

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S C PDV TY+ +I++      +     +  EM    ++  A+  +++++   +  + E 
Sbjct: 606 SGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHER 665

Query: 239 MESSFSAMVESGGCHP-------DIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKAD 290
           +      M E   C P       +I    SM+  +  +  I E ++   +  +       
Sbjct: 666 VLQLMELMKEK--CIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSIS------- 716

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + TLN L    G+ G  + M  +   M        V TY +++      G   K  E  +
Sbjct: 717 VGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQ 776

Query: 351 KMKHRGMKPNSITY 364
            M+  G+ P    Y
Sbjct: 777 WMEDAGVSPTLYMY 790


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 180/397 (45%), Gaps = 37/397 (9%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ +F  ++ Q+ Y AR   +  ++ +  +  Q +QA  LF  M     KP  D Y +L+
Sbjct: 136 AVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLI 195

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            A+ ++G    A + ++DM+  +   P   TY+ +I +C     +    ++  +M+  G+
Sbjct: 196 HAHARAGQWRWAINIMDDMQRAA-IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGV 254

Query: 217 ECSAVTYNTIIDGYGKAKK-------FEEMESS--------------------------- 242
               +T+N ++  +    +       FE M+SS                           
Sbjct: 255 GPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIE 314

Query: 243 -FSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F++M E    C PD+ T  S++ +Y   G  E  +  ++     GV+ +I + N L  +
Sbjct: 315 LFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGA 374

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y   GM+ +       +++  F P +V+Y  ++  +G++   EK  E F +M+    KPN
Sbjct: 375 YASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPN 434

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+ AY  AG++ +  S+L ++E   +  D    + +++A G+     K+G +  
Sbjct: 435 KVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILA 494

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             K R    + + + + I +Y +LG  + A  L   M
Sbjct: 495 AAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSM 531



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 174/362 (48%), Gaps = 13/362 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  +W+ A+ I   +++     +R  T+  ++   G     ++A  L + M  +G+ P +
Sbjct: 200 RAGQWRWAINIMDDMQRAAIPPSR-TTYNNVINACGAAGNWKKALELCKKMTENGVGPDL 258

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  ++SA+       +A +    MKS S   PD  T +I+I    K   +    ++  
Sbjct: 259 ITHNIVLSAFKNGAQYSKAIAYFEIMKS-SKVAPDTCTMNIVIHCLVKVALYGEAIELFN 317

Query: 210 EMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
            M      C    VTY +I+  Y    + E  ++ F  MV  G   P+I + N+++ AY 
Sbjct: 318 SMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEG-VRPNIVSYNALLGAYA 376

Query: 268 NSG-NIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           + G + E +E     F L+   G K DI +   L  +YGR+ + +K R V + M+K    
Sbjct: 377 SHGMHTEALET----FKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACK 432

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  V+YN +I+ +G AG +++      +M+  G++P+ I+  +L++A  +     K+  I
Sbjct: 433 PNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGII 492

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L   ++  + L+T  +N  I +Y   GD +K  EL+ +M+  +  PD +T+  +I     
Sbjct: 493 LAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCK 552

Query: 444 LG 445
           LG
Sbjct: 553 LG 554



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 2/287 (0%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYT 187
           Q  +A   FE+M S  + P       ++    +  L  EA    N M+     C PDV T
Sbjct: 273 QYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVT 332

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ ++ S +   + +  + +   M   G+  + V+YN ++  Y       E   +F  ++
Sbjct: 333 YTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFK-LL 391

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           +  G  PDI +  S+++AYG S   EK  + +NE      K +  + N L  +YG AGM 
Sbjct: 392 KQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGML 451

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +  S++  M++    P V++ + ++   G+     K+       K RG++ N++ Y S 
Sbjct: 452 KEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSG 511

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           + +Y   G   K   +   +   +V  D   +N +IS   + G   K
Sbjct: 512 IGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLGSFRK 558



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 4/207 (1%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           DI+ +  MI  +     +++    + E      K D  T N L  ++ RAG +    ++M
Sbjct: 154 DIYGM--MIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIM 211

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D MQ+    P+  TYN VI   G AG+ +K  E  KKM   G+ P+ IT+  ++SA+   
Sbjct: 212 DDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNG 271

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 432
               K  +    +++S V  DT   N +I    +     +  ELF +M+ER   C PD +
Sbjct: 272 AQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVV 331

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIA 459
           T+ +++ +Y+  G  E  + + + M+A
Sbjct: 332 TYTSIMYSYSVCGQAENCKAVFDMMVA 358


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 163/326 (50%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L K +   +A  +F  M + G+ P+V  YT+L+          EA + +N+M
Sbjct: 233 TYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM 292

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S+ +  PD+ T+S+LI    K       + +L  M+ +G+E + +TYN+++ GY    +
Sbjct: 293 TSL-NIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQME 351

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M+ + GC PD+F+ + +I+ Y     I++ ++ +NE    G+  +  +  
Sbjct: 352 VVEARKLFDVMI-TRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYT 410

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  ++ + G   + R +   M    + P + TY++++E F K G++ K    F+ M+  
Sbjct: 411 TLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGT 470

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +KPN + Y  L+ +  K+G +     +  ++    +  D   +  II+   + G +++ 
Sbjct: 471 YLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEA 530

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
            E F  M+E  C P+  ++  +I+ +
Sbjct: 531 LEAFRKMEEDGCPPNEFSYNVIIRGF 556



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  L K  +  QA  LF+ M++ G +P V  YT +++   + G    A   I  M
Sbjct: 163 TFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM 222

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             V  C+PDV TYS LI S  K    +    I + M   GI  + V+Y ++I G     +
Sbjct: 223 GEVG-CQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSR 281

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E  +  + M  S    PDI T + +I  +   GN+ + +        MGV+ ++ T N
Sbjct: 282 WKEASAMLNEMT-SLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYN 340

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y       + R + D M  R   P V +Y+I+I  +     I++ ++ F +M H+
Sbjct: 341 SLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQ 400

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN+++Y +L+ A+ + G + +   + + +  +  + D   ++ ++  + + G + K 
Sbjct: 401 GLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKA 460

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             LF  M+  +  P+ + +  +I +    G    A+ L
Sbjct: 461 FRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKL 498



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 6/348 (1%)

Query: 114 CQ--TFTKLMVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           CQ   +T   ++ G CK  E A+   L + M   G +P V  Y+ L+ +  +  L++EA 
Sbjct: 192 CQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEAL 251

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
              + MK+     P V +Y+ LI+    F R+     +L EM+ L I    VT++ +ID 
Sbjct: 252 DIFSYMKA-KGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDI 310

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K     E +     M E G   P++ T NS++  Y     + +  K ++     G K 
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMG-VEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKP 369

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+ + +IL   Y      D+ + + + M  +   P  V+Y  +I  F + G + +  E F
Sbjct: 370 DVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELF 429

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M   G  P+  TY  L+  + K G + K   + R ++ + +  +   +  +I +  ++
Sbjct: 430 KDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKS 489

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G++    +LF  +      PD   + T+I      G+ + A     KM
Sbjct: 490 GNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKM 537



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 149/322 (46%), Gaps = 1/322 (0%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  ML     P +  +  L+SA  +     +A  +++    ++   P+  T +ILI    
Sbjct: 78  FNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFC 137

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
                DL   +LA++  LG++ + +T+ T+I+G  KA +F +    F  MV + GC PD+
Sbjct: 138 LMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMV-ARGCQPDV 196

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T  ++I+     G          +   +G + D+ T + L  S  +  + ++   +  +
Sbjct: 197 YTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSY 256

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+ +   PTVV+Y  +I+        ++      +M    + P+ +T+  L+  + K G 
Sbjct: 257 MKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGN 316

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           +++   +L+ +    V  +   +N ++  Y    +V +  +LF  M  R C PD  +++ 
Sbjct: 317 VLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSI 376

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           +I  Y  +   + A+ L N+MI
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMI 398



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 106/240 (44%), Gaps = 14/240 (5%)

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN------- 280
           D     +  ++  +SF+ M+      P I   N ++SA      I +M ++Y+       
Sbjct: 63  DASSSFRNIDDALASFNHMLHRKPL-PCIIQFNKLLSA------IVRMRQYYDAVISLSK 115

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +  L G+  +  TLNIL   +      D   SV+  + K    PT++T+  +I    KAG
Sbjct: 116 QMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAG 175

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
              +  E F  M  RG +P+  TY ++++   K G       +++++       D   ++
Sbjct: 176 EFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYS 235

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I +  +   V +  ++F  MK +   P  +++ ++IQ   +    + A  + N+M ++
Sbjct: 236 TLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSL 295



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 98/240 (40%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           + +N ++    + +++ +   S S  +E  G  P+  TLN +I+ +    +++       
Sbjct: 91  IQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLA 150

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +   +G++  I T   L     +AG + +   + D M  R   P V TY  +I    K G
Sbjct: 151 KVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMG 210

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
                    KKM   G +P+ +TY +L+ +  K  L+ +   I   ++   +      + 
Sbjct: 211 ETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYT 270

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I         ++   +   M   + +PD +TF+ +I  +   G    AQ +   M  M
Sbjct: 271 SLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEM 330


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            L P    Y+ L++ +G+ GL D+A S +  M+     + D+  YS LI+   K   +  
Sbjct: 4   ALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQ-DRVRGDLVLYSNLIELSRKLCDYSK 62

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------- 250
              I + +   GI    V YN++I+ +GKAK F E  S  S M  +G             
Sbjct: 63  AISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLT 122

Query: 251 ---------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                                 C  D+ T N MI  YG  G  ++ +K +     +G++ 
Sbjct: 123 MYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+ RG++PN+ITY +++S + K G + +   +  ++ +S + +D   +  +I AY +A
Sbjct: 243 QEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVSHAKRLLHELK----TPDNIPRDTAIHILARAGRIEEA 339



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 174/386 (45%), Gaps = 39/386 (10%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q   +     ++ L+ +  K     +A  +F  +   G+ P + VY ++++ +G++ L 
Sbjct: 36  EQDRVRGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPDLVVYNSMINVFGKAKLF 95

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            EA S I++M++ +   PD  +Y+ L+    +  +F     + AEM  +       T N 
Sbjct: 96  REARSLISEMRT-AGVMPDTVSYTALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNI 154

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +ID YG+    +E +  F +M    G  P++ + N+++  YG++   E   +  + F LM
Sbjct: 155 MIDVYGQLGMAKEADKLFWSM-RKLGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLM 210

Query: 286 ---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
               ++ ++ T N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +
Sbjct: 211 QRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKL 270

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL------------------ 384
           ++    F+K++  G++ + + Y +++ AY +AGL+     +L                  
Sbjct: 271 DRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIHIL 330

Query: 385 -------------RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
                        RQ  ++  + D   F  +I  + +      + E+F  M+      D+
Sbjct: 331 ARAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYSNIVEVFDKMRGLEYFSDS 390

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
              A ++ AY  L   E A ++  +M
Sbjct: 391 YVIALVLNAYGKLHEFEKANDVYTEM 416



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +    +     +E    GV  D  +   L   Y 
Sbjct: 67  FSRLKRSG-IMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKL 280



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           + R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RDRALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  +  +
Sbjct: 61  SKAISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTAL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     ++ EM   G+    V+Y T++  
Sbjct: 64  ISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + + K+F E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     +G++ 
Sbjct: 124 HVENKRFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ NS V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T I    A G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDTAIHILAAAGRLEEA 339



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 177/377 (46%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y ++++ + ++ L  EA S IN+M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   PD  +Y+ L+    +  RF     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKIGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  + K G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLR 281

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
           + G++ + + Y +++ AY +AGL+     +L +++  D I  DT     I++A G+    
Sbjct: 282 NSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAAAGRLEEA 339

Query: 409 ---------AGDVEKMG-------------------ELFLTMKERHCVPDNITFATMIQA 440
                    AG+V+ +                    E+F  M+ER   PD+   A ++ A
Sbjct: 340 TWVFRQAIDAGEVKDITVFERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNA 399

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   E A ++  +M
Sbjct: 400 YGKLHEFEKANSVYMEM 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +  +    +     NE    GV  D  +   L   + 
Sbjct: 67  FSRLKRSGFA-PDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           + R   P++IT++T+I  +  +G  + A  L  K+     NSG ++ Q 
Sbjct: 246 QNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKL----RNSGVEIDQV 290



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 119/301 (39%), Gaps = 38/301 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ K++  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 125 VENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKIGIE 181

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++ EM   GIE +++TY+TII  + K  K +     F  +  SG    D     +MI AY
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSG-VEIDQVLYQTMIVAY 299

Query: 267 GNSGNIEKMEKWYNEFNL-------------------------------MGVKADIQTLN 295
             +G +   ++  +E                                   G   DI    
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAAGRLEEATWVFRQAIDAGEVKDITVFE 359

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + +   Y  +  V D M++R +FP      +V+  +GK    EK    + +M+  
Sbjct: 360 RLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVYMEMQDE 419

Query: 356 G 356
           G
Sbjct: 420 G 420



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  +  +
Sbjct: 61  SKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ + +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + R + P+  TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            K   +F  +K     PD + + +MI  +    +   A++L N+M
Sbjct: 61  SKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEM 105


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + K   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 160/361 (44%), Gaps = 7/361 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E    G++ +  T + +   +G+ G  DK   +   ++        V Y  +I  +
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAY 299

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + D 
Sbjct: 300 ERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDI 355

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             F  +I  + +      + E+F  M+     P++   A ++ AY  L   + A ++  +
Sbjct: 356 TVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLNAYGKLHEFDKANDVYME 415

Query: 457 M 457
           M
Sbjct: 416 M 416



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 161/381 (42%), Gaps = 74/381 (19%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G ++K    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLR 281

Query: 354 HRGMKPNSITYCSLVSAYSK-------------------------------AGLIMKVDS 382
             G+  + + Y +++ AY +                               AG I +   
Sbjct: 282 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFN-----------------------------------CIISAYG 407
           + RQ  ++  + D   F                                     +++AYG
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLNAYG 401

Query: 408 QAGDVEKMGELFLTMKERHCV 428
           +  + +K  ++++ M+E  CV
Sbjct: 402 KLHEFDKANDVYMEMQEVGCV 422



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 3/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM    +  +PE A   F  +L  GL+    + + L+  + ++   DEA   +   
Sbjct: 79  TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHR 138

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKA 233
                C PDV++Y+IL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K 
Sbjct: 139 TPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKE 198

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               +    F  MV+ G   PD+ T NS++ A   +  ++K E +  +     V  +  T
Sbjct: 199 GDVNKACDLFKEMVQRG-IPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWT 257

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L   Y   G + +   V   M++    P VVT ++++ +  K G I++  + F  M 
Sbjct: 258 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 317

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G  P+  +Y  +++ Y+  G ++ +  +   +    +  D   FN  I AY   G ++
Sbjct: 318 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLD 377

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           K   +F  M++    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 378 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 422



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 33/281 (11%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTY+IL+  CT+ HR +L      ++   G+   A+  + ++ G+ +AK+ +E    
Sbjct: 75  PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 134

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ N ++ +  N G   + +      NL+ + A+  T+        
Sbjct: 135 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQAD------NLLRMMAEGGTV-------- 180

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
                                P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 181 -------------------CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 221

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 222 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 281

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +    +PD +T + ++ +    G  + A+++ + M    +N
Sbjct: 282 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 322


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 1/325 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  L+    +    E A  + + M   GLKPS   Y  L+  YG +G  DE+   ++ M 
Sbjct: 145 FNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMS 204

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +  + KP++ TY++LI++  K         ++ +M+  G++   VT+NTI   Y +  K 
Sbjct: 205 TEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKT 264

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            + E+    M +     P+  T   +IS Y   G +++  ++      +G++ ++  LN 
Sbjct: 265 AQAEAMILEM-QRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNS 323

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   +      D +  V+  M++    P V+TY+ ++  + +AG +EK +E +  M   G
Sbjct: 324 LVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSG 383

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +KP++  Y  L   Y +A  + K + +L  +  S V  +   F  +IS +   G ++   
Sbjct: 384 VKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAM 443

Query: 417 ELFLTMKERHCVPDNITFATMIQAY 441
            +F  M E    P+  TF T+I  Y
Sbjct: 444 RVFDKMGEFGVSPNLKTFETLIWGY 468



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 166/330 (50%), Gaps = 7/330 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++ TK+M +L K  +P++A ++F+ ++  G +PS+  YT L++A        + F  I+ 
Sbjct: 73  RSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNAL----TTQKYFKPIHS 128

Query: 175 MKSVSD---CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           + S+ +    KPD   ++ LI +  +    +  +K++ +M   G++ SA TYNT+I GYG
Sbjct: 129 IVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYG 188

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
            A K +E       M   G   P++ T N +I A     NI +      +    G++ D+
Sbjct: 189 IAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDV 248

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N +  +Y + G   +  +++  MQ+    P   T  I+I  + + G +++   +  +
Sbjct: 249 VTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYR 308

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  GM+PN I   SLV+ +        VD +L+ +E   +  D   ++ I++A+ QAG 
Sbjct: 309 MKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGF 368

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +EK  E++  M +    PD   ++ + + Y
Sbjct: 369 LEKCKEIYNNMLKSGVKPDAHAYSILAKGY 398



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 156/329 (47%), Gaps = 2/329 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++K+  L+  +   +   +T+  L+  L K +   +A  +   M + G++P V  +  + 
Sbjct: 196 SMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIA 255

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +AY Q+G   +A + I +M+  S  KP+  T +I+I    +  +     + +  M  LG+
Sbjct: 256 TAYAQNGKTAQAEAMILEMQRNS-LKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGM 314

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + +  N++++G+      + ++     M E     PD+ T +++++A+  +G +EK +
Sbjct: 315 QPNLIVLNSLVNGFVDMMDRDGVDEVLKLM-EEFQIRPDVITYSTIMNAWSQAGFLEKCK 373

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + YN     GVK D    +IL K Y RA   +K   ++  M K    P VV +  VI  +
Sbjct: 374 EIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGW 433

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G ++     F KM   G+ PN  T+ +L+  Y++A    K + +L+ +E   V    
Sbjct: 434 CSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKK 493

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKER 425
                +  A+  AG  E+   L  T+K +
Sbjct: 494 STILLVAEAWRFAGFKERAKTLLRTVKAK 522



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 37/280 (13%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G + S  TY T+++     K F+ + S  S +VE     PD    N++I+A+  SGN+E 
Sbjct: 102 GHQPSLATYTTLLNALTTQKYFKPIHSIVS-LVEEKQMKPDSIFFNALINAFAESGNMED 160

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVI 333
            +K   +    G+K    T N L K YG AG  D+   ++D M       P + TYN++I
Sbjct: 161 AKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLI 220

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
               K  +I +      KM   GM+P+ +T+ ++ +AY++ G   + ++++ +++ + + 
Sbjct: 221 RALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLK 280

Query: 394 LDTPFFNCIISAYGQAGDVE-------KMGEL---------------FLTMKERHCV--- 428
            +      IIS Y + G V+       +M +L               F+ M +R  V   
Sbjct: 281 PNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEV 340

Query: 429 ----------PDNITFATMIQAYNALGMTEAAQNLENKMI 458
                     PD IT++T++ A++  G  E  + + N M+
Sbjct: 341 LKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNML 380


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 177/376 (47%), Gaps = 37/376 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K       L + M  +G+ P+   +  L++ + Q GL+  AFS +  + 
Sbjct: 71  FNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKIL 130

Query: 177 SVSDCKPDVYTYSILIKS-CTK--FHR-FDLIEKILA------EMSY---------LG-- 215
            +   +PD+ T +  IK  C K   H+  +  +K++A      ++SY         +G  
Sbjct: 131 KMG-YEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGET 189

Query: 216 --------------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                         ++ +AV YNT+IDG  K K   +    +S MV +    PD+ T ++
Sbjct: 190 RAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMV-AKRISPDVVTYSA 248

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I  +   G ++     +N+  L  +K D+ T NIL   + + G   K ++V+D M  + 
Sbjct: 249 LIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQD 308

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P V T+N +++ F K   +++ +  F  M  +G+KPN +TYCSL+  Y     + K  
Sbjct: 309 IKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAK 368

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I   +    V  +   +N +I+ + +   V+K  +LF+ M  +H +PD +T+ ++I   
Sbjct: 369 KIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGL 428

Query: 442 NALGMTEAAQNLENKM 457
              G    A  L N+M
Sbjct: 429 CKSGKISYAFQLVNEM 444



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 128/275 (46%), Gaps = 25/275 (9%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           + K K    A  L+  M++  + P V  Y+AL+  +   G L +A    N M  + + KP
Sbjct: 218 MSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKM-ILENIKP 276

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DVYT++IL+    K  R    + +L  M    I+ +  T+NT++DG+ K +K +E ++ F
Sbjct: 277 DVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVF 336

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           + M++ G   P++ T  S++  Y     + K +K +N  +  GV A++ + NI+   + +
Sbjct: 337 AMMMKQG-IKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK------------------- 344
               DK   +   M  +   P VVTYN +I+   K+G I                     
Sbjct: 396 IKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIIT 455

Query: 345 ----MEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
               +     K+K +G++PN  T   L+    ++G
Sbjct: 456 YNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSG 490



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%)

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           F  N ++ +   S +   +     +    G+  +  T NIL   + + G+     SV+  
Sbjct: 69  FEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAK 128

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           + K  + P ++T N  I+ F   G I +   +  K+   G   + ++Y +L++   K G 
Sbjct: 129 ILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGE 188

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                 +LR+V+   V L+   +N +I    +   V    +L+  M  +   PD +T++ 
Sbjct: 189 TRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSA 248

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           +I+ +  +G  + A +L NKMI
Sbjct: 249 LIRGFFIVGKLKDAIDLFNKMI 270



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 15/198 (7%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +K +    +F ++  +Q  +    T+  LM      KQ  +A  +F  M   G
Sbjct: 320 VDGFCKDRKMKEGKTVFAMM-MKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRG 378

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +  +V  Y  +++ + +   +D+A     +M       PDV TY+ LI    K  +    
Sbjct: 379 VTANVHSYNIMINGFCKIKKVDKAMKLFIEMHH-KHIIPDVVTYNSLIDGLCKSGKISYA 437

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +++ EM   G   + +TYN+I++             +    ++  G  P++ T   +I 
Sbjct: 438 FQLVNEMHDRGQPPNIITYNSILN-------------ALLTKLKDQGIQPNMHTDTILIK 484

Query: 265 AYGNSGNIEKMEKWYNEF 282
               SG +E   K + + 
Sbjct: 485 GLCQSGKLEAARKVFEDL 502


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 3/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM    +  +PE A   F  +L  GL+    + + L+  + ++   DEA   +   
Sbjct: 115 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHR 174

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKA 233
                C PDV++Y+IL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K 
Sbjct: 175 TPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKE 234

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               +    F  MV+  G  PD+ T +S++ A   +  ++K E +  +    GV  D  T
Sbjct: 235 GDVNKACDLFKEMVQR-GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWT 293

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L   Y   G + +   V   M+++   P VV  N ++ +  K G I++  + F  M 
Sbjct: 294 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMA 353

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G  P+  +Y  +++ Y+  G ++ +  +   +    +      FN +I AY   G ++
Sbjct: 354 MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLD 413

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           K   +F  M++    P  +T+ T+I A   +G  + A    N+MI
Sbjct: 414 KAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ M+  G+ P +  Y+++V A  ++  +D+A + +  M +     PD +TY+ L
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNL 297

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM    I    V  NT++    K  K +E    F  M   G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
            +PD+F+   M++ Y   G +  M   ++     G+   I T N+L K+Y   GM DK  
Sbjct: 358 -NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 416

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ ++ N+ + LD  FF  II+   + G V     +F         PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + +  ++  Y  +G  E A  + + M++
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVS 564



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 6/331 (1%)

Query: 127 CKQPE--QASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           C Q +  QA  L  +M   G    P V  Y  ++  + + G +++A     +M       
Sbjct: 195 CNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-RGIP 253

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD+ TYS ++ +  K    D  E  L +M   G+     TYN +I GY    +++E    
Sbjct: 254 PDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRV 313

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M       PD+  LN+++ +    G I++    ++   + G   D+ +  I+   Y 
Sbjct: 314 FKEM-RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
             G    M  + D M      P + T+N++I+ +   G ++K    F +M+  G+KP+ +
Sbjct: 373 TKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY ++++A  + G +        Q+ +  V+ D   ++C+I  +   G + K  EL   +
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                  D + F ++I     LG    AQN+
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNI 523



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 157/350 (44%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+     C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQM 457

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD Y Y  LI+           +++++E+   G+    V + +II+   K  +
Sbjct: 458 ID-QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGR 516

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F   V  G  HPD    N ++  Y   G +EK  + ++     G++ ++    
Sbjct: 517 VMDAQNIFDLTVNVG-LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYG 575

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  D+  S+   M ++   P+ + YNI+I+   +AG     +  F +M   
Sbjct: 576 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 635

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N  TY  ++    K     +   + +++   +V +D    N +I+   Q   VE+ 
Sbjct: 636 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 695

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +LF ++     VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 696 KDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 741



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 147/343 (42%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K +  ++A      M++ G+ P    Y  L+  Y  +G   EA     +M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV   + L+ S  K+ +      +   M+  G      +Y  +++GY     
Sbjct: 318 RRQS-ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  P I T N +I AY N G ++K    +NE    GVK  + T  
Sbjct: 377 LVDMTDLFDLML-GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYM 435

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + 
Sbjct: 436 TVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 495

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM+ + + + S+++   K G +M   +I     N  +  D   +N ++  Y   G +EK 
Sbjct: 496 GMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA 555

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 556 LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTY+IL+  CT+ HR +L      ++   G+   A+  + ++ G+ +AK+ +E    
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ N ++ +  N                                 G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQ--------------------------------G 198

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 199 KSGQADDLLRMMA-EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 257

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ D   +N +I  Y   G  ++   +F  M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           + +  +PD +   T++ +    G  + A+++ + M AMK
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM-AMK 355



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 2/279 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++  L K  +   A  +F++ ++ GL P   VY  L+  Y   G +++A    + M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S +  +P+V  Y  L+    K  R D    +  EM   GI+ S + YN IIDG  +A + 
Sbjct: 564 S-AGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRT 622

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
              +  F  M ESG    +  T + ++     +   ++    + E   M VK DI TLN 
Sbjct: 623 VPAKVKFHEMTESG-IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +    ++ + +   + +    P  VTY+I+I    K G +E+ E+ F  M++ G
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 741

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            +P+S     +V    K   I++  + L +++  +  L+
Sbjct: 742 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 780


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 179/365 (49%), Gaps = 4/365 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           Q  WQ +L +   + ++  Y      +  ++  + + +Q E A  L   M+   L P   
Sbjct: 2   QDDWQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKF 61

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            ++ L+S YG++  L++A   + +M++    KPD+  +S LI+   K   +     + ++
Sbjct: 62  TFSTLISGYGRANRLEDAMGWLQEMEA-GGIKPDLVIFSTLIELAGKVKDYSKATSLFSK 120

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +   GI    V YN++I+ YGKAK ++E +   + M E+ G  PD  +   +I+AY  S 
Sbjct: 121 LKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEA-GLMPDTVSYTILINAYAESQ 179

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTY 329
              + ++ + E    G++ D+ T N++   YG+  M      +   M K       VVTY
Sbjct: 180 KYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTY 239

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           N +I+ + +A  + +    F  M+++ G++PN ITY +++  +       K   ++R+++
Sbjct: 240 NTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQ 299

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +  +   ++ +IS YG+ G  ++   LF T++E+    D I + +MI  Y   G+  
Sbjct: 300 QRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVA 359

Query: 449 AAQNL 453
            A+ L
Sbjct: 360 HAKRL 364



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 164/393 (41%), Gaps = 68/393 (17%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+ + GK K   +A+ LF  + + G+ P   +Y ++++ YG++    EA   + +MK
Sbjct: 98  FSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMK 157

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY----------------------- 213
             +   PD  +Y+ILI +  +  ++   +++  EM                         
Sbjct: 158 E-AGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMV 216

Query: 214 -------------LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                        LGI+ + VTYNT+I  Y +A+   E  + F  M   GG  P++ T N
Sbjct: 217 RDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYN 276

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           +++  +G +   EK  +   +    G++ +  T + L   YG+ G YD+   +   ++++
Sbjct: 277 TILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREK 336

Query: 321 FFFPTVVTYNIVIETFGKAGHI----------------------------EKMEEYFK-- 350
            F    + Y  +I  + +AG +                            EK+EE  K  
Sbjct: 337 GFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKAEKLEEAAKLY 396

Query: 351 -KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +    G    S+TY S++  + +         +   +  S  + D+     +++AYGQ 
Sbjct: 397 WRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQL 456

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             +E   +L+L M+ER C  +      M++ Y 
Sbjct: 457 RQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYG 489



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 312 SVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           ++ D+M +K  + P++  YN+V++   +A   E  E    +M  + + P+  T+ +L+S 
Sbjct: 10  ALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISG 69

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y +A  +      L+++E   +  D   F+ +I   G+  D  K   LF  +K     PD
Sbjct: 70  YGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPD 129

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            + + +MI  Y      + AQ L  +M
Sbjct: 130 KVIYNSMINLYGKAKFYKEAQGLLAEM 156



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 11/252 (4%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           QQ+  +    T++ L+ + GK  + ++A+ LF+ +   G +    +Y +++  Y ++GL+
Sbjct: 299 QQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLV 358

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   + ++K     +PD+      I    K  + +   K+       G    +VTY +
Sbjct: 359 AHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKS 413

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I  + + K+ +     F  M ESG   PD  T   +++AYG    +E  EK Y +    
Sbjct: 414 MIQLFMRNKRSKNAIDVFENMRESGFL-PDSETTVVLLAAYGQLRQLEDAEKLYLDMRER 472

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ--KRFFFPTVVTYNIVIETFGKAGHIE 343
           G   + +    + K YG A    K+R   D     K         Y  +I  + +A  + 
Sbjct: 473 GCTLEKEVHFQMLKLYGDA---RKIREAEDMFAALKLEGLDGDELYLTMIRIYERASKLN 529

Query: 344 KMEEYFKKMKHR 355
           +    F +MK R
Sbjct: 530 EASRLFSEMKSR 541


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 159/346 (45%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +PE A   F  +L  GL+  + +   L+  + ++   DEA   +  
Sbjct: 116 HTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLH 175

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGK 232
                 C PDV++YSIL+KS     +    + +L  M+  G  CS   V Y T+ID + K
Sbjct: 176 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFK 235

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F  MV+ G   PD+ T +S++ A   +  + K E +  +    GV  D  
Sbjct: 236 EGDVNKACDLFKEMVQRG-IPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNW 294

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M++    P VVT N+++ +  K G I++  + F  M
Sbjct: 295 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTM 354

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+  +Y  +++ Y+  G ++ +  +   +    +  D   F+ +I AY   G +
Sbjct: 355 AMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGML 414

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +K   +F  M++    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 415 DKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 168/364 (46%), Gaps = 12/364 (3%)

Query: 103 LLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           LLR      A C      +T ++    K     +A  LF+ M+  G+ P +  Y+++V A
Sbjct: 208 LLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHA 267

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
             ++  + +A + +  M +     PD +TY+ LI   +   ++    ++  EM    I  
Sbjct: 268 LCKARAMGKAEAFLRQMVN-KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 326

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
             VT N ++    K  K +E    F  M   G  +PD+F+   M++ Y   G +  M   
Sbjct: 327 DVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQ-NPDVFSYKIMLNGYATKGCLVDMTDL 385

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           ++     G+  DI T ++L K+Y   GM DK   + + M+     P VVTY  VI    +
Sbjct: 386 FDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCR 445

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G ++   E F +M  +G+ P+   Y  L+  +   G ++K   ++ ++ N+ + LD  F
Sbjct: 446 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVF 505

Query: 399 FNCIISAYGQAG---DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
           F+ II+   + G   D + + +L + + +    PD + ++ ++  Y  +G  E A  + +
Sbjct: 506 FSSIINNLCKLGRIMDAQNIFDLTVNVGQH---PDAVVYSMLMDGYCLVGKMEKALRVFD 562

Query: 456 KMIA 459
            M++
Sbjct: 563 AMVS 566



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K +   +A      M++ G+ P    Y  L+  Y  +G   EA     +M
Sbjct: 260 TYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 319

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PDV T ++L+ S  K+ +      +   M+  G      +Y  +++GY     
Sbjct: 320 RRHS-ILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +M   F  M+   G  PDI+T + +I AY N G ++K    +NE    GVK D+ T  
Sbjct: 379 LVDMTDLFDLML-GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYT 437

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  R G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + 
Sbjct: 438 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNN 497

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GM+ + + + S+++   K G IM   +I     N     D   ++ ++  Y   G +EK 
Sbjct: 498 GMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKA 557

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M      P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 558 LRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREML 600



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 156/349 (44%), Gaps = 3/349 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W+ A+++F  +R+         T   LM  L K  + ++A  +F+ M   G  P V  Y
Sbjct: 308 QWKEAVRVFKEMRRHSIL-PDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 366

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             +++ Y   G L +  + + D+       PD+YT+S+LIK+       D    I  EM 
Sbjct: 367 KIMLNGYATKGCLVD-MTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR 425

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G++   VTY T+I    +  K ++    F+ M++ G   PD +  + +I  +   G++
Sbjct: 426 DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQG-VAPDKYAYHCLIQGFCTHGSL 484

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            K ++   E    G++ DI   + +  +  + G     +++ D        P  V Y+++
Sbjct: 485 LKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSML 544

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++ +   G +EK    F  M   G++PN + Y +LV+ Y K G I +  S+ R++    +
Sbjct: 545 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 604

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              T  +N II     AG        F  M E     +  T+  +++ +
Sbjct: 605 KPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGF 653



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+     C   ++A ++F  M   G+KP V  YT +++A  + G +D+A    N M
Sbjct: 400 TFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQM 459

Query: 176 KSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                  PD Y Y  LI+  CT        E IL  M+  G+    V +++II+   K  
Sbjct: 460 ID-QGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNN-GMRLDIVFFSSIINNLCKLG 517

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  + ++ F   V  G  HPD    + ++  Y   G +EK  + ++     G++ ++   
Sbjct: 518 RIMDAQNIFDLTVNVGQ-HPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 576

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y + G  D+  S+   M ++   P+ + YNI+I+    AG     +  F +M  
Sbjct: 577 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTE 636

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+  N  TY  ++  + K     +   + +++   +V +D    N +I+   Q   VE+
Sbjct: 637 SGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEE 696

Query: 415 MGELFLTMKERHCVPDNIT 433
             +LF ++     VP  +T
Sbjct: 697 AKDLFASISRSGLVPCVVT 715



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 8/321 (2%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF++ML DG+ P +  ++ L+ AY   G+LD+A    N+M+     KPDV TY+ +I + 
Sbjct: 385 LFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRD-HGVKPDVVTYTTVIAAL 443

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGC 252
            +  + D   +   +M   G+      Y+ +I G+   G   K +E+       + + G 
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILE----IMNNGM 499

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
             DI   +S+I+     G I   +  ++    +G   D    ++L   Y   G  +K   
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALR 559

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V D M      P VV Y  ++  + K G I++    F++M  +G+KP++I Y  ++    
Sbjct: 560 VFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 619

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
            AG  +       ++  S + ++   +N ++  + +    ++   LF  ++  +   D I
Sbjct: 620 VAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDII 679

Query: 433 TFATMIQAYNALGMTEAAQNL 453
           T  TMI         E A++L
Sbjct: 680 TLNTMIAGMFQTRRVEEAKDL 700



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 34/279 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TY+IL+  CT+ HR +L      ++   G+    +  N ++ G+ +AK+ +E    
Sbjct: 113 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 172

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 173 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 200

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  D +  +M         P VV Y  VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 201 KSGQADDLLRMMA-EGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLV 259

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY S+V A  KA  + K ++ LRQ+ N  V+ D   +N +I  Y   G  ++   +F  M
Sbjct: 260 TYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 319

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +    +PD +T   ++ +    G  + A+++ + M AMK
Sbjct: 320 RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTM-AMK 357


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 179/365 (49%), Gaps = 4/365 (1%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           Q  WQ +L +   + ++  Y      +  ++  + + +Q E A  L   M+   L P   
Sbjct: 2   QDDWQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKF 61

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            ++ L+S YG++  L++A   + +M++    KPD+  +S LI+   K   +     + ++
Sbjct: 62  TFSTLISGYGRANRLEDAMGWLQEMEA-GGIKPDLVIFSTLIELAGKVKDYSKATSLFSK 120

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +   GI    V YN++I+ YGKAK ++E +   + M E+ G  PD  +   +I+AY  S 
Sbjct: 121 LKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEA-GLMPDTVSYTILINAYAESQ 179

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTY 329
              + ++ + E    G++ D+ T N++   YG+  M      +   M K       VVTY
Sbjct: 180 KYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTY 239

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           N +I+ + +A  + +    F  M+++ G++PN ITY +++  +       K   ++R+++
Sbjct: 240 NTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQ 299

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +  +   ++ +IS YG+ G  ++   LF T++E+    D I + +MI  Y   G+  
Sbjct: 300 QRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVA 359

Query: 449 AAQNL 453
            A+ L
Sbjct: 360 HAKRL 364



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 164/393 (41%), Gaps = 68/393 (17%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+ + GK K   +A+ LF  + + G+ P   +Y ++++ YG++    EA   + +MK
Sbjct: 98  FSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMK 157

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY----------------------- 213
             +   PD  +Y+ILI +  +  ++   +++  EM                         
Sbjct: 158 E-AGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMV 216

Query: 214 -------------LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                        LGI+ + VTYNT+I  Y +A+   E  + F  M   GG  P++ T N
Sbjct: 217 RDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYN 276

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           +++  +G +   EK  +   +    G++ +  T + L   YG+ G YD+   +   ++++
Sbjct: 277 TILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREK 336

Query: 321 FFFPTVVTYNIVIETFGKAGHI----------------------------EKMEEYFK-- 350
            F    + Y  +I  + +AG +                            EK+EE  K  
Sbjct: 337 GFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKAEKLEEAAKLY 396

Query: 351 -KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +    G    S+TY S++  + +         +   +  S  + D+     +++AYGQ 
Sbjct: 397 WRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQL 456

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
             +E   +L+L M+ER C  +      M++ Y 
Sbjct: 457 RQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYG 489



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 312 SVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           ++ D+M +K  + P++  YN+V++   +A   E  E    +M  + + P+  T+ +L+S 
Sbjct: 10  ALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISG 69

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y +A  +      L+++E   +  D   F+ +I   G+  D  K   LF  +K     PD
Sbjct: 70  YGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPD 129

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            + + +MI  Y      + AQ L  +M
Sbjct: 130 KVIYNSMINLYGKAKFYKEAQGLLAEM 156



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 11/252 (4%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           QQ+  +    T++ L+ + GK  + ++A+ LF+ +   G +    +Y +++  Y ++GL+
Sbjct: 299 QQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLV 358

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   + ++K     +PD+      I    K  + +   K+       G    +VTY +
Sbjct: 359 AHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKS 413

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I  + + K+ +     F  M ESG   PD  T   +++AYG    +E  EK Y +    
Sbjct: 414 MIQLFVRNKRSKNAIDVFENMRESGFL-PDSETTVVLLAAYGQLRQLEDAEKLYLDMRER 472

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ--KRFFFPTVVTYNIVIETFGKAGHIE 343
           G   + +    + K YG A    K+R   D     K         Y  +I  + +A  + 
Sbjct: 473 GCTLEKEVHFQMLKLYGDA---RKIREAEDMFAALKLEGLDGDELYLTMIRIYERASKLN 529

Query: 344 KMEEYFKKMKHR 355
           +    F +MK R
Sbjct: 530 EASRLFSEMKSR 541


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 37/352 (10%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TF+ L+  L    +  +A  L + M+  G KP +     LV+    SG   EA 
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             I+ M     C+P+  TY  ++    K  +  L  ++L +M    I+  AV Y+ IIDG
Sbjct: 214 LLIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             K                                     G+++     +NE  + G+  
Sbjct: 273 LCK------------------------------------HGSLDNAFNLFNEMEMKGITT 296

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I T NIL   +  AG +D    ++  M KR   P VVT++++I++F K G + + EE  
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K+M HRG+ P++ITY SL+  + K   + K + ++  + +     +   FN +I+ Y +A
Sbjct: 357 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 416

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             ++   ELF  M  R  V D +T+ T+IQ +  LG    A+ L  +M++ K
Sbjct: 417 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 151/347 (43%), Gaps = 2/347 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T+  ++ ++ K  Q   A  L   M    +K     Y+ ++    + G LD AF+
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             N+M+ +     ++ TY+ILI       R+D   K+L +M    I  + VT++ +ID +
Sbjct: 285 LFNEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 343

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  K  E E     M+  G   PD  T  S+I  +    +++K  +  +     G   +
Sbjct: 344 VKEGKLREAEELHKEMIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 402

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I+T NIL   Y +A   D    +   M  R      VTYN +I+ F + G +   +E F+
Sbjct: 403 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 462

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  R + PN +TY  L+      G   K   I  ++E S + LD   +N II     A 
Sbjct: 463 EMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 522

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            V+   +LF ++  +   P   T+  MI      G    A+ L  KM
Sbjct: 523 KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 12/377 (3%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLF 137
           PVL  +    K  +  LA++   LLR+ +    +       +++ G CK    + A  LF
Sbjct: 233 PVLNVM---CKSGQTALAME---LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
             M   G+  ++  Y  L+  +  +G  D+    + DM       P+V T+S+LI S  K
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-RKINPNVVTFSVLIDSFVK 345

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             +    E++  EM + GI    +TY ++IDG+ K    ++       MV S GC P+I 
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV-SKGCDPNIR 404

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N +I+ Y  +  I+   + + + +L GV AD  T N L + +   G  +  + +   M
Sbjct: 405 TFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 464

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
             R   P +VTY I+++     G  EK  E F+K++   M+ +   Y  ++     A  +
Sbjct: 465 VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                +   +    V      +N +I    + G + +   LF  M+E    PD  T+  +
Sbjct: 525 DDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNIL 584

Query: 438 IQAYNALGMTEAAQNLE 454
           I+A+  LG  +A ++++
Sbjct: 585 IRAH--LGDGDATKSVK 599



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  LF  M+     P+V  ++ L SA  ++   D   +    M+ +     ++YT 
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME-LKGIAHNLYTL 126

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SI+I    +  +  L    + ++  LG E + +T++T+I+G     +  E       MVE
Sbjct: 127 SIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE 186

Query: 249 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            G   PD+ T+N++++    SG        I+KM ++  + N +        LN++ KS 
Sbjct: 187 MGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP---VLNVMCKSG 242

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
             A   + +R     M++R      V Y+I+I+   K G ++     F +M+ +G+  N 
Sbjct: 243 QTALAMELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  L+  +  AG       +LR +    +  +   F+ +I ++ + G + +  EL   
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M  R   PD IT+ ++I  +      + A  + + M++
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 10/304 (3%)

Query: 161 QSGLLD----EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +SGL+D    +A     DM   S   P V  +S L  +  K  ++DL+  +  +M   GI
Sbjct: 61  RSGLVDIKADDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 119

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEK 274
             +  T + +I+ + + +K   +  +FSAM  +   G  P+  T +++I+     G + +
Sbjct: 120 AHNLYTLSIMINCFCRCRK---LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 176

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             +  +    MG K D+ T+N L      +G   +   ++D M +    P  VTY  V+ 
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              K+G      E  +KM+ R +K +++ Y  ++    K G +    ++  ++E   +  
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 296

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   +N +I  +  AG  +   +L   M +R   P+ +TF+ +I ++   G    A+ L 
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 455 NKMI 458
            +MI
Sbjct: 357 KEMI 360


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 166/364 (45%), Gaps = 38/364 (10%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG  ++  +A  LF E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 255 RSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQV 314

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT--------- 222
           +++M S     PD  TYS+L+ + T+  R++    +L EM   G++ S+           
Sbjct: 315 LDEM-SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 373

Query: 223 --------------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
                                     YN +ID +GK         +F  M E G   PD+
Sbjct: 374 DRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG-IEPDV 432

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T N++I A+   G  ++  + ++E           T NI+    G    ++ + +++  
Sbjct: 433 VTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAE 492

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL
Sbjct: 493 MKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGL 552

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                ++++ +    +   T   N +I+A+G+   + +   +   MKE    PD IT+ T
Sbjct: 553 ADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTT 612

Query: 437 MIQA 440
           +++A
Sbjct: 613 LMKA 616



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 1/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+    + + P+ A  L     + GL P  +  TAL+S+ G +  + EA +   +  
Sbjct: 224 FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFF 283

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
              + KP    Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++
Sbjct: 284 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 343

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E        M E+ G  P  +  + +++ + + G  +K      E +  GV+ D    N+
Sbjct: 344 ESARILLKEM-EADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNV 402

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +  ++G+           D M++    P VVT+N +I+   K G  ++  E F +M+   
Sbjct: 403 MIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 462

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
               + TY  +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  
Sbjct: 463 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 522

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +    MK     P    +  ++ AY   G+ + A N+   M A
Sbjct: 523 DCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 565



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 156/329 (47%), Gaps = 10/329 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 329 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREM 388

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            + S  +PD + Y+++I +  K+    H  D  +++  E    GIE   VT+NT+ID + 
Sbjct: 389 HA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE----GIEPDVVTWNTLIDAHC 443

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C     T N MI+  G     E +E    E    G+  +I
Sbjct: 444 KGGRHDRAIELFDEMRESN-CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 502

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G + +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 503 ITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 562

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G++ +++   SL++A+ +   I +  S+L+ ++ + +  D   +  ++ A  +   
Sbjct: 563 MRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 622

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQA 440
            EK+  ++  M    C PD    A +  A
Sbjct: 623 FEKVPVIYEEMITSGCAPDRKARAMLRSA 651



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 7/282 (2%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARC-QTFTKLMV-MLGKCKQPEQASLLFEVMLSDGLKPS 148
           + +WQ   K F +LR+      R  + F  +M+   GK      A   F+ M  +G++P 
Sbjct: 375 RGEWQ---KAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPD 431

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  +  L+ A+ + G  D A    ++M+  S+C     TY+I+I    +  R++ +E +L
Sbjct: 432 VVTWNTLIDAHCKGGRHDRAIELFDEMRE-SNCPLGTTTYNIMINLLGEEQRWEGVEAML 490

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AEM   G+  + +TY T++D YG++ +F+E      AM ++ G  P     +++++AY  
Sbjct: 491 AEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM-KADGLKPSPTMYHALVNAYAQ 549

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  +            G++A    LN L  ++G      +  SV+ FM++    P V+T
Sbjct: 550 RGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVIT 609

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           Y  +++   +    EK+   +++M   G  P+      L SA
Sbjct: 610 YTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSA 651



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 126/285 (44%), Gaps = 3/285 (1%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G A++  E
Sbjct: 215 SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 274

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            E+ F     +G   P     N+++  Y   G+++  E+  +E +  GV  D  T ++L 
Sbjct: 275 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++M   G++
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   Y  ++  + K   +        ++    +  D   +N +I A+ + G  ++  EL
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           F  M+E +C     T+  MI   N LG  +  + +E  +  MKE 
Sbjct: 455 FDEMRESNCPLGTTTYNIMI---NLLGEEQRWEGVEAMLAEMKEQ 496


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            + ++ MLG  K   QA  +F  + +   +P    Y +++      G  ++     N+M 
Sbjct: 129 LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMS 188

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C PD  TYS LI +  K  R D   ++L EM  +G++ +   Y  +I       D 
Sbjct: 189 TEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDA 248

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + 
Sbjct: 249 HGALSLFEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP 300

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    +   M+     P+VVTYN +I+  F       ++  +
Sbjct: 301 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSW 360

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+
Sbjct: 361 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 420

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE         +A MI+     G  + A N+ ++M
Sbjct: 421 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 469



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 3/348 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T L+ +  K      A  LFE M     +P V  YT L+   G++G +DEA+ 
Sbjct: 229 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 288

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
              +M+    C+PD    + +I    K  R D   K+  EM  L    S VTYNTII   
Sbjct: 289 FFCEMQR-EGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 347

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M ESG   P  FT + +I  +  +  +EK      E +  G   
Sbjct: 348 FESKSRASEVPSWFERMKESG-ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 407 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 466

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  P+   Y +L+S  ++ G++ +  S +R+++    I D   +N I++   + 
Sbjct: 467 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 526

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G   +  E+   MK+    PD +++ T++ A +  GM E A  L  +M
Sbjct: 527 GGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 574



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 152/348 (43%), Gaps = 39/348 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R Q + +    T+T+L+  LGK  + ++A   F  M  +G +P       ++
Sbjct: 251 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI 309

Query: 157 SAYGQSGLLDEAFSTINDMKSV-----------------------------------SDC 181
           +  G++G LD+A     +M+++                                   S  
Sbjct: 310 NFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI 369

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++    
Sbjct: 370 SPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 429

Query: 242 SFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L   
Sbjct: 430 LFQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 487

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R GM D+  S M  MQ+    P + +YNI++    K G   +  E    MK   ++P+
Sbjct: 488 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 547

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++Y +++ A S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 548 VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 6/229 (2%)

Query: 116 TFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           +FT  +++ G CK  + E+A +L E M   G  P    Y +L+ A G++   D A     
Sbjct: 373 SFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 432

Query: 174 DMKSVSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++K   +C       Y+++IK   K  R D    +  EM+ LG       YN ++ G  +
Sbjct: 433 ELKE--NCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 490

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               +E  S+   M E G C PDI + N +++    +G   +  +  +      V+ D+ 
Sbjct: 491 TGMLDEALSTMRRMQEHG-CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVV 549

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
           + N +  +   AGM+++   +M  M    F   ++TY+ ++E  GK  H
Sbjct: 550 SYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 598



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 1/241 (0%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I      +++ EM      MV +  C      L+ ++   GN+  + +    + +
Sbjct: 92  TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQ 151

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 340
                 +   Q  N +       G Y+K+  + + M      FP  VTY+ +I  F K G
Sbjct: 152 IKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLG 211

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             +   +   +MK  GM+P +  Y  L++ + K        S+  ++ +     D   + 
Sbjct: 212 RRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 271

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I   G+AG +++    F  M+   C PD +    MI      G  + A  L  +M  +
Sbjct: 272 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 331

Query: 461 K 461
           +
Sbjct: 332 R 332


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 166/350 (47%), Gaps = 8/350 (2%)

Query: 114 CQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           C+T    TKLM  L +  +P++A  +F  ++  G KPS+  YT L++A       D  +S
Sbjct: 10  CRTVRSRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYS 69

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I+ ++  +   PD   ++ +I + ++    +   +   +M   G++ +  TYNT+I GY
Sbjct: 70  IISQVEE-NGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGY 128

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVK 288
           G A K EE       M + G   P++ T N ++ A+ N   I   E W   + ++  G++
Sbjct: 129 GIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRI--TEAWNVVYKMIASGIQ 186

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ T N +  +Y + G  D+   V+  MQ     P   T  I++  + K G I +   +
Sbjct: 187 PDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRF 246

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +MK  G+ PN + + SL+  +        VD +L  +E   V  D   F+ I++A+  
Sbjct: 247 AYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWST 306

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           AG +EK  E+F  M +    PD   ++ + + Y      E A+ L   MI
Sbjct: 307 AGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMI 356



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 160/339 (47%), Gaps = 3/339 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  L+   G   +PE++  L E+M  +G +KP++  Y  LV A+     + EA++ +  
Sbjct: 120 TYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYK 179

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M + S  +PDV TY+ +  +  +    D  E ++ EM   G++ +  T   I+ GY K  
Sbjct: 180 MIA-SGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEG 238

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E    F+  ++  G HP++   NS+I  +    + + +++  N     GVK D+ T 
Sbjct: 239 RIREA-LRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITF 297

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           + +  ++  AG  +K R + D M K    P    Y+I+ + + +A   EK EE    M  
Sbjct: 298 STIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIK 357

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +PN + + +++S +  AG +     +  ++    +  +   F  +I  + +A    K
Sbjct: 358 SGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWK 417

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             E+   M E    P+  T   + +A+ A GMT+ A  L
Sbjct: 418 AEEILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRL 456



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 6/321 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A   F  M  +G+KP+   Y  L+  YG +G  +E+   +  M    + KP++ TY++
Sbjct: 100 ESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNV 159

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++     R      ++ +M   GI+   VTYNTI   Y +    ++ E     M ++ 
Sbjct: 160 LVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEM-QNN 218

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+  T   ++S Y   G I +  ++      +G+  ++   N L K +      D +
Sbjct: 219 GVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGV 278

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V++ M++    P V+T++ ++  +  AG +EK  E F  M   G++P++  Y  L   
Sbjct: 279 DEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKG 338

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y +A    K + +L  +  S    +   F  +IS +  AG ++    +F  M +R   P+
Sbjct: 339 YVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPN 398

Query: 431 NITFATMIQAYNALGMTEAAQ 451
             TF T+I      G  EA Q
Sbjct: 399 LKTFETLI-----WGFAEARQ 414



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 145/289 (50%), Gaps = 2/289 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++K+  L+ Q+   +   +T+  L+      K+  +A  +   M++ G++P V  Y  + 
Sbjct: 137 SVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIA 196

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +AY Q G LD+A   I +M++ +  +P+  T  I++    K  R     +    M  LGI
Sbjct: 197 TAYAQKGALDQAEGVILEMQN-NGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGI 255

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + V +N++I G+      + ++   + M E  G  PD+ T +++++A+  +G +EK  
Sbjct: 256 HPNLVIFNSLIKGFVAIMDRDGVDEVLNLM-EEFGVKPDVITFSTIMNAWSTAGFMEKCR 314

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + +++    G++ D    +IL K Y RA   +K   ++  M K  F P VV +  VI  +
Sbjct: 315 EIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGW 374

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             AG ++     F KM  RG+ PN  T+ +L+  +++A    K + IL+
Sbjct: 375 CSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQ 423


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 5/328 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  +PE+A  LF+ M    +KP+   Y++L+SA+ ++G ++ A +   +M
Sbjct: 425 TYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEM 484

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     PDV+ ++ LI    K  + D   +I   M  L I+   +T+N +I   GKAK 
Sbjct: 485 -THERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKN 543

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                 +   M E  G  PD  + N++I A G SG+  K  + + E    G++    T N
Sbjct: 544 SIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFN 603

Query: 296 ILTKSYGRAGMYDKMRS--VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            L   YG +  +D   S  ++D M +    P   T N +I    +   +    E  +K K
Sbjct: 604 ALI--YGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFK 661

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+ P+++T+ + + A  K     K+  +L ++E+  +       N I+   G+ G ++
Sbjct: 662 QLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKID 721

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAY 441
            M   F    E+   PD++TF+ +I+ Y
Sbjct: 722 LMERGFHMFHEKRLEPDSVTFSLLIENY 749



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 168/381 (44%), Gaps = 48/381 (12%)

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           +  LG+ ++  +A      M  + ++P++  Y+AL+   G+ GL   A S    M  + +
Sbjct: 319 ITALGRLERYSEAERSLIWMREEHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDN 378

Query: 181 CKPDVYTYSILIKSCTKFHRFDL-----IEKILAEMSYLGIECSAVTYNTIIDGYGKA-- 233
             P+  TY+ +IK  ++  R D         +L EM+  G     VTY T+ID + K   
Sbjct: 379 IAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRME 438

Query: 234 -----KKFEEME------------SSFSAMVESGGCH---------------PDIFTLNS 261
                K F+EM+            S  SA   +G                  PD+F  N+
Sbjct: 439 PERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNA 498

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I  +G    ++K  + Y+    + ++ D  T N L  + G+A    +    M  M + +
Sbjct: 499 LIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIY 558

Query: 322 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGL 376
              P   +YN +I+  GK+G   K  E F++M+ +G++P ++T+ +L+   S+    A  
Sbjct: 559 GLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAAS 618

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
              VD +L++  N D        N +ISA  +  D+    E+    K+    PDN+TF T
Sbjct: 619 FKIVDLMLQEGLNPDAYT----MNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNT 674

Query: 437 MIQAYNALGMTEAAQNLENKM 457
            I A   L  +E    L ++M
Sbjct: 675 FIDAVGKLDSSEKMFELLSEM 695



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWY 279
            +++  I   G+ +++ E E S   M E     P+I+T +++I   G  G  +  + ++ 
Sbjct: 313 ASWSIYITALGRLERYSEAERSLIWMREEH-IQPNIYTYSALIETLGKGGLCVRALSQFR 371

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYD-----KMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +  +  +  T N + K   R    D     +  S++  M  +   P VVTY  +I+
Sbjct: 372 RMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLID 431

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            F K    E+  + F++MK   +KPN+  Y SL+SA+ +AG + +  +I  ++ +  ++ 
Sbjct: 432 AFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVP 491

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D   FN +I  +G+   V+K  E++  M++    PD ITF  +I A
Sbjct: 492 DVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISA 537



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 134/321 (41%), Gaps = 51/321 (15%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  L+   GK +Q ++A  +++ M    ++P    + AL+SA G++     A   + DM 
Sbjct: 496 FNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMT 555

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +    PD ++Y+ LI +C K   F    ++  EM   GI    VT+N +I  YG A + 
Sbjct: 556 EIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALI--YG-ASRS 612

Query: 237 EEMESSF---SAMVESG----------------------------------GCHPDIFTL 259
            ++ +SF     M++ G                                  G HPD  T 
Sbjct: 613 HDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTF 672

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+ I A G   + EKM +  +E    G+     TLN +    GR G  D M        +
Sbjct: 673 NTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHE 732

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           +   P  VT++++IE +     ++K    +   K + ++ NS     L+ +     LI K
Sbjct: 733 KRLEPDSVTFSLLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVMHLLES-----LIRK 787

Query: 380 VDSILRQVENSDVIL-DTPFF 399
                 ++E + +IL D PF 
Sbjct: 788 -----DEIEVAKLILKDYPFL 803



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK---WY 279
           +N  +D   K  K  E    F +M  S     D+ + +  I+A G      + E+   W 
Sbjct: 280 WNYTMDALLKGGKARECLDMFLSM-PSNEVKRDVASWSIYITALGRLERYSEAERSLIWM 338

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGK 338
            E +   ++ +I T + L ++ G+ G+  +  S    M +     P  VTYN VI+   +
Sbjct: 339 REEH---IQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSR 395

Query: 339 A-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
                 G I +     ++M  +G  P+ +TY +L+ A+SK     +   + ++++ ++V 
Sbjct: 396 CKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVK 455

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +   ++ +ISA+ +AG VE+   +F  M     VPD   F  +I  +  L   + A  +
Sbjct: 456 PNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEI 515

Query: 454 ENKM 457
            ++M
Sbjct: 516 YDRM 519


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 177/377 (46%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    ++A+++ E+M   G+ P+   YT ++ AYG++G  DEA      M
Sbjct: 360 TYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 419

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  + C P+  TY+ ++    K  R + + K+L +M   G   +  T+NTI+   G    
Sbjct: 420 KE-AGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGM 478

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +   F  M +S G  PD  T N++ISAYG  G+     K Y E    G  A + T N
Sbjct: 479 DKFVNRVFREM-KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYN 537

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEE----- 347
            L  +  R G +    +V+  M+ + F PT  +Y+++++ + K G+   IE++EE     
Sbjct: 538 ALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEG 597

Query: 348 ---------------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                       F   K  G KP+ + + S++S +++  +  + 
Sbjct: 598 QIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQA 657

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + IL+ +    +  D   +N ++  Y + G+  K  E+  T+++    PD +++ T+I+ 
Sbjct: 658 EGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKG 717

Query: 441 YNALGMTEAAQNLENKM 457
           +   G+ + A  + ++M
Sbjct: 718 FCRKGLMQEAVRMLSEM 734



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 173/425 (40%), Gaps = 47/425 (11%)

Query: 71  KKYKNLWPKPVLEALDEAIK-----QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           ++ K + P P L   +  +       + W+   KI G+L + +    +   FT    +L 
Sbjct: 241 ERMKEMGPSPTLVTYNVILDVFGKMGRSWR---KILGVLEEMRSKGLKFDEFT-CSTVLS 296

Query: 126 KCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
            C +     +A   F  + S G +P    Y AL+  +G++G+  EA S + +M+  ++C 
Sbjct: 297 ACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE-NNCP 355

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ L+ +  +         ++  M+  G+  +A+TY T+ID YGKA K +E    
Sbjct: 356 ADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKL 415

Query: 243 FSAMVESG----------------------------------GCHPDIFTLNSMISAYGN 268
           F +M E+G                                  GC P+  T N++++  GN
Sbjct: 416 FYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGN 475

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  + + + + E    G + D  T N L  +YGR G       +   M +  F   V T
Sbjct: 476 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 535

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN ++    + G     E     MK +G KP   +Y  ++  Y+K G  + ++ I   + 
Sbjct: 536 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGIN 595

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +         ++ A  +   +      F   K+    PD + F +M+  +    M +
Sbjct: 596 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 655

Query: 449 AAQNL 453
            A+ +
Sbjct: 656 QAEGI 660



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 156/339 (46%), Gaps = 3/339 (0%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+ +LG+  Q   A+ L + +        V  YT ++ AY ++G  ++A +    MK + 
Sbjct: 188 LVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMG 247

Query: 180 DCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
              P + TY++++    K  R +  I  +L EM   G++    T +T++    +     E
Sbjct: 248 P-SPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLRE 306

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            +  F A ++S G  P   T N+++  +G +G   +      E       AD  T N L 
Sbjct: 307 AKDFF-AELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELV 365

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y RAG   +   V++ M ++   P  +TY  VI+ +GKAG  ++  + F  MK  G  
Sbjct: 366 AAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 425

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN+ TY +++S   K     ++  +L  ++++    +   +N I++  G  G  + +  +
Sbjct: 426 PNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRV 485

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           F  MK     PD  TF T+I AY   G    A  +  +M
Sbjct: 486 FREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 524



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 169/411 (41%), Gaps = 70/411 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   GK  + ++A  LF  M   G  P+   Y A++S  G+    +E    + DM
Sbjct: 395 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDM 454

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--- 232
           KS + C P+  T++ ++  C        + ++  EM   G E    T+NT+I  YG+   
Sbjct: 455 KS-NGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 513

Query: 233 ----AKKFEEM-ESSFSAMV--------------------------ESGGCHPDIFTLNS 261
               +K + EM  + F+A V                          +S G  P   + + 
Sbjct: 514 EVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSL 573

Query: 262 MISAYGNSGN---IEKMEKWYNE--------------------------------FNLMG 286
           M+  Y   GN   IE++E+  NE                                F   G
Sbjct: 574 MLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHG 633

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            K D+   N +   + R  MYD+   ++  + +    P +VTYN +++ + + G   K E
Sbjct: 634 YKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAE 693

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E  K ++   +KP+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y
Sbjct: 694 EILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGY 753

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              G   ++ ++   M +  C P+ +TF  ++  Y   G    A +  +K+
Sbjct: 754 TAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 804



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 2/296 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF  L+   G+C     AS ++  M   G    V  Y AL++A  + G      + I+D
Sbjct: 499 DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 558

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    KP   +YS++++   K   +  IE+I   ++   I  S +   T++    K +
Sbjct: 559 MKS-KGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCR 617

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                E +F+ + +  G  PD+   NSM+S +  +   ++ E      +  G+  D+ T 
Sbjct: 618 ALAGSERAFT-LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTY 676

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y R G   K   ++  ++K    P +V+YN VI+ F + G +++      +M  
Sbjct: 677 NSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTE 736

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           RG++P   TY + VS Y+  G+  +++ ++  +  +D   +   F  ++  Y +AG
Sbjct: 737 RGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 792



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 9/280 (3%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +   IL++   +  ++ +  K+L ++           Y TI+  Y +  K+E+  +
Sbjct: 179 KLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAIN 238

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F  M E G   P + T N ++  +G  G +  K+     E    G+K D  T + +  +
Sbjct: 239 LFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSA 297

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R G+  + +     ++   + P  VTYN +++ FGKAG   +     K+M+      +
Sbjct: 298 CAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPAD 357

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           S+TY  LV+AY++AG   +   ++  +    V+ +   +  +I AYG+AG  ++  +LF 
Sbjct: 358 SVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 417

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +MKE  CVP+  T       YNA+      ++  N+MI M
Sbjct: 418 SMKEAGCVPNTCT-------YNAVLSMLGKKSRSNEMIKM 450



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 122/268 (45%), Gaps = 39/268 (14%)

Query: 225 TIIDGYGKAKKFEEMESSFSAMV---ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +++ G   +  +E     F  +V    SG    D   +  ++   G         K  ++
Sbjct: 148 SLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDK 207

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
             L     D++    +  +Y R G Y+K  ++ + M++    PT+VTYN++++ FGK G 
Sbjct: 208 IPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGR 267

Query: 342 --------IEKM----------------------------EEYFKKMKHRGMKPNSITYC 365
                   +E+M                            +++F ++K  G +P ++TY 
Sbjct: 268 SWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYN 327

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +L+  + KAG+  +  S+L+++E ++   D+  +N +++AY +AG  ++   +   M ++
Sbjct: 328 ALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQK 387

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNL 453
             +P+ IT+ T+I AY   G  + A  L
Sbjct: 388 GVMPNAITYTTVIDAYGKAGKEDEALKL 415



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 10/212 (4%)

Query: 259 LNSMISAYGNSGNIEK---MEKWYN-EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           L S++    +SG+ E+   + +W     N   +K D   + IL +  GR   Y     ++
Sbjct: 146 LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLL 205

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D +  + +   V  Y  ++  + + G  EK    F++MK  G  P  +TY  ++  + K 
Sbjct: 206 DKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKM 265

Query: 375 GL-IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           G    K+  +L ++ +  +  D    + ++SA  + G + +  + F  +K     P  +T
Sbjct: 266 GRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVT 325

Query: 434 FATMIQAYNALGM-TEAAQNLENKMIAMKENS 464
           +  ++Q +   G+ TEA   L+     M+EN+
Sbjct: 326 YNALLQVFGKAGVYTEALSVLKE----MEENN 353


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 170/351 (48%), Gaps = 6/351 (1%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q     +  ++  + K K   +A  LF  M+S G+ P V  Y+AL+S +   G L++A  
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAID 281

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             N M  + + KPDVYT++IL+ +  K  +    + +   M   GI+ + VTYN+++DGY
Sbjct: 282 LFNKM-ILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
              K+  + +S F+ M + GG +PDI + + MI+ +      ++    + E +   +  D
Sbjct: 341 CLVKEVNKAKSIFNTMAQ-GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD 399

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T + L     ++G       ++D M  R   PT+ TYN +++   K   ++K      
Sbjct: 400 VVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLT 459

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ--VENSDVILDTPFFNCIISAYGQ 408
           K+K +G++PN  TY  L+    ++G +     +     V+  ++ +DT  +  +I  +  
Sbjct: 460 KLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDT--YTIMIQGFCV 517

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G   +   L   M++  C+PD  T+  +I +       + A+ L  +MIA
Sbjct: 518 EGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 568



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 164/380 (43%), Gaps = 45/380 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K       L + M   G+KP++     L++ + Q GL+  AFS    + 
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FH---------------------------- 199
            +    PD  T++ LIK  C K        FH                            
Sbjct: 148 KMGYV-PDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGET 206

Query: 200 --RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
               DL++++   +    ++ + V YNTIID   K K   E    FS M+ S G  PD+ 
Sbjct: 207 RAALDLLQRVDGNL----VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMI-SKGISPDVV 261

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T +++IS +   G +      +N+  L  +K D+ T NIL  ++ + G   + ++V D M
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            K+   P  VTYN +++ +     + K +  F  M   G+ P+  +Y  +++ + K    
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +  ++ +++   ++I D   ++ +I    ++G +    +L   M +R   P   T+ ++
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSI 441

Query: 438 IQAYNALGMTEAAQNLENKM 457
           + A   +   + A  L  K+
Sbjct: 442 LDALCKIHQVDKAIALLTKL 461



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 162/353 (45%), Gaps = 12/353 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  L    Q +QA L  + +++ G       Y  L+    + G   E  + ++ +
Sbjct: 157 TFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG---ETRAALDLL 213

Query: 176 KSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           + V     +P+V  Y+ +I S  K    +    + +EM   GI    VTY+ +I G+   
Sbjct: 214 QRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCIL 273

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKAD 290
            K  +    F+ M+      PD++T N +++A+   G   KM++    F++M   G+K +
Sbjct: 274 GKLNDAIDLFNKMILEN-IKPDVYTFNILVNAFCKDG---KMKEGKTVFDMMMKQGIKPN 329

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T N L   Y      +K +S+ + M +    P + +Y+I+I  F K    ++    FK
Sbjct: 330 FVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  + + P+ +TY SL+   SK+G I     ++ Q+ +  V      +N I+ A  +  
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIH 449

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            V+K   L   +K++   P+  T++ +I+     G  E A+ +   ++    N
Sbjct: 450 QVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHN 502



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 113/263 (42%), Gaps = 2/263 (0%)

Query: 197 KFHRFDLIEKI-LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           KF  F  ++      + Y   + + ++Y++    +      ++  S F+ ++      P 
Sbjct: 26  KFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTT-PP 84

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
            F  N ++ +   S +   +     +    G+K ++   NIL   + + G+     SV  
Sbjct: 85  AFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFA 144

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            + K  + P  +T+  +I+     G I++   +  K+   G   + I+Y +L+    K G
Sbjct: 145 KILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                  +L++V+ + V  +   +N II +  +   V +  +LF  M  +   PD +T++
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
            +I  +  LG    A +L NKMI
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMI 287



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    T++ L+  L +  + E A  +FE +L  G   +VD YT ++  +   GL +EA +
Sbjct: 467 QPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALA 526

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            ++ M+  + C PD  TY I+I S  K    D+ EK+L EM   G+ 
Sbjct: 527 LLSKMED-NGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVR 572



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 35/153 (22%)

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D   S+ + + +R   P    +N ++ +  K+ H   +    +KM+ RG+KPN +    L
Sbjct: 67  DDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNIL 126

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++ + + GLI                   PF      A+     + KMG           
Sbjct: 127 INCFCQLGLI-------------------PF------AFSVFAKILKMGY---------- 151

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           VPD ITF T+I+     G  + A    +K++A+
Sbjct: 152 VPDTITFTTLIKGLCLKGQIQQAFLFHDKVVAL 184


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 169/379 (44%), Gaps = 37/379 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L +    E+   +   M+  G  P + +Y  ++    + G L+ A   +N M
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP+V  Y+ L+K      R++  E++LAEM         VT+N ++D + +   
Sbjct: 324 PSYG-LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGL 382

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM-------------------- 275
            + +      M+E G C PD+ T  ++I+ +   G I++                     
Sbjct: 383 VDRVIELLEQMLERG-CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT 441

Query: 276 ---------EKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                    E+W +  +LM      G   +  T N L     + G+ ++   ++  M   
Sbjct: 442 IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN 501

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +++Y+ VI+  GKAG  ++  E    M ++GM PN+I Y S+ SA S+ G I KV
Sbjct: 502 GCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKV 561

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   ++++ +  D   +N +IS+  + G+ E+  E    M    CVP+  T+  +I+ 
Sbjct: 562 IQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 621

Query: 441 YNALGMTEAAQNLENKMIA 459
             + G  + AQ +  ++ +
Sbjct: 622 LASEGFVKEAQEMLTELCS 640



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 158/363 (43%), Gaps = 37/363 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
             A  + E + + G    V     +++A    G +DEA   + D+ S   C+PDV +Y+ 
Sbjct: 174 RSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFG-CEPDVVSYNA 232

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++K      R+  +++++ EM  +    + VT+NT+I    +   FE +    + MVE G
Sbjct: 233 VLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG 292

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ------------------ 292
            C PDI    ++I      G++E   +  N     G+K ++                   
Sbjct: 293 -CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEET 351

Query: 293 -----------------TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                            T NIL   + + G+ D++  +++ M +R   P V+TY  VI  
Sbjct: 352 EELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVING 411

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           F K G I++     K M   G KPN+I+Y  ++     A   +  + ++ Q+      L+
Sbjct: 412 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLN 471

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FN +I+   + G VE+  EL   M    C PD I+++T+I      G T+ A  L N
Sbjct: 472 PITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLN 531

Query: 456 KMI 458
            M+
Sbjct: 532 VMV 534



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 141/315 (44%), Gaps = 2/315 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+   Y  +V A    G + +A + +++M     C P    Y +++++  +   F   
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPR-RGCAPIPPMYHVILEAACRGGGFRSA 176

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L ++   G        N +++        +E       +  S GC PD+ + N+++ 
Sbjct: 177 VRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL-PSFGCEPDVVSYNAVLK 235

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +     +++   E   M    +I T N L     R G+++++  V+  M +    P
Sbjct: 236 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP 295

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +I+   K GH+E   E   +M   G+KPN + Y +L+     A    + + +L
Sbjct: 296 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 355

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ + D  LD   FN ++  + Q G V+++ EL   M ER C+PD IT+ T+I  +   
Sbjct: 356 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKE 415

Query: 445 GMTEAAQNLENKMIA 459
           G+ + A  L   M A
Sbjct: 416 GLIDEAVMLLKSMTA 430



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 4/235 (1%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN ++ GY +A + E      +A+       P+ +T   ++ A    G I       +E 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVP----PNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G        +++ ++  R G +     V++ +  R     V   N+V+      G +
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           ++     + +   G +P+ ++Y +++     A     V  ++ ++       +   FN +
Sbjct: 209 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           IS   + G  E++ E+   M E  C PD   +AT+I      G  E A  + N+M
Sbjct: 269 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +   Y RAG  +  R +   +      P   TY  V+      G I        +M  
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG  P    Y  ++ A  + G       +L  +      LD    N +++A    G V++
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 210

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              L   +    C PD +++  +++           Q L  +M+ M
Sbjct: 211 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 184/386 (47%), Gaps = 37/386 (9%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  Y+    TFT L+  L    +  +A  L + M+  G +P++  Y  +V+   + G +D
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 242

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+ +N M++ +  + +V  YS +I S  K+   D    +  EM   G+  + +TY+++
Sbjct: 243 LAFNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 301

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I      +++ +     S M+E    +P++ T N++I A+   G + + EK Y+E     
Sbjct: 302 ISCLCNYERWSDASRLLSDMIERK-INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  DI T + L   +      D+ + + + M  +  FP VVTYN +I  F KA  I++  
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKA----------------GL---IMKVDSILR-- 385
           E F++M  RG+  N++TY +L+  + +A                G+   IM  +++L   
Sbjct: 421 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480

Query: 386 ----QVENSDVILD---------TPF-FNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
               ++E + V+ +         T + +N +I    +AG VE   +LF ++  +   PD 
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDV 540

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
           I + TMI  +   G+ E A  L  KM
Sbjct: 541 IIYNTMISGFCRKGLKEEADALFRKM 566



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 152/313 (48%), Gaps = 3/313 (0%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
            +D   K +    AL +F  + + +  +    T++ L+  L   ++   AS L   M+  
Sbjct: 266 VIDSLCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            + P+V  + AL+ A+ + G L EA    ++M   S   PD++TYS LI       R D 
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMHDRLDE 383

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            + +   M       + VTYNT+I+G+ KAK+ +E    F  M + G    +  T  ++I
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG-LVGNTVTYTTLI 442

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             +  + + +  +  + +    GV  +I T N L     + G  +K   V +++Q+    
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+ TYNI+IE   KAG +E   + F  +  +G+KP+ I Y +++S + + GL  + D++
Sbjct: 503 PTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562

Query: 384 LRQVENSDVILDT 396
            R++     + D+
Sbjct: 563 FRKMREDGPLPDS 575



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 166/370 (44%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+   A  L + M+  G +P  
Sbjct: 132 RRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +T L+          EA + ++ M     C+P++ TY +++    K    DL   +L 
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN 249

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    IE + V Y+T+ID   K +  ++  + F+ M E+ G  P++ T +S+IS   N 
Sbjct: 250 KMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCN- 307

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
                 E+W                             D  R + D ++++   P VVT+
Sbjct: 308 -----YERWS----------------------------DASRLLSDMIERKIN-PNVVTF 333

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +   +   + +
Sbjct: 334 NALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 393

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            D   +   +N +I+ + +A  +++  ELF  M +R  V + +T+ T+I  +      + 
Sbjct: 394 KDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 453

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 454 AQMVFKQMVS 463



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 101 FGLLRQQQW--YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +    +A    ++ ++  L K +  + A  LF  M + G++P+V  Y++L+S 
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
                   +A   ++DM       P+V T++ LI +  K  +    EK+  EM    I+ 
Sbjct: 305 LCNYERWSDASRLLSDMIE-RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TY+++I+G+    + +E +  F  M+ S  C P++ T N++I+ +  +  I++  + 
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYNTLINGFCKAKRIDEGVEL 422

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + E +  G+  +  T   L   + +A   D  + V   M      P ++TYN +++   K
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 482

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +EK    F+ ++   M+P   TY  ++    KAG +     +   +    V  D   
Sbjct: 483 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVII 542

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +N +IS + + G  E+   LF  M+E   +PD+ T
Sbjct: 543 YNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 149/336 (44%), Gaps = 49/336 (14%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           LD+A      M   S   P ++ ++ L+ +  K  +FDL+  +  +M  LGI  +  TYN
Sbjct: 66  LDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+ + +  +     +    M++  G  P I TL+S+++ Y +   I       ++   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE- 343
           MG + D  T   L           +  +++D M +R   P +VTY +V+    K G I+ 
Sbjct: 184 MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 243

Query: 344 ------KME----------------------------EYFKKMKHRGMKPNSITYCSLVS 369
                 KME                              F +M+++G++PN ITY SL+S
Sbjct: 244 AFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 303

Query: 370 A------YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
                  +S A  ++  D I R++ N +V+     FN +I A+ + G + +  +L+  M 
Sbjct: 304 CLCNYERWSDASRLLS-DMIERKI-NPNVVT----FNALIDAFVKEGKLVEAEKLYDEMI 357

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +R   PD  T++++I  +      + A+++   MI+
Sbjct: 358 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 393



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 38/256 (14%)

Query: 208 LAEMSYLGIECSAVT--YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           L  M Y G   S+ +  Y  I+     + K ++    F  MV+S    P IF  N ++SA
Sbjct: 36  LCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPL-PSIFEFNKLLSA 94

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
                 I KM+K                             +D + S+ + MQ+      
Sbjct: 95  ------IAKMKK-----------------------------FDLVISLGEKMQRLGISHN 119

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           + TYNI+I  F +   I        KM   G +P+ +T  SL++ Y     I    +++ 
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           Q+       DT  F  +I          +   L   M +R C P+ +T+  ++      G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 446 MTEAAQNLENKMIAMK 461
             + A NL NKM A K
Sbjct: 240 DIDLAFNLLNKMEAAK 255


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 4/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+V   +     +A  +F  ML  G+ P +  +++L++ + ++  LD+A     DM
Sbjct: 225 TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284

Query: 176 KSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           K      PD   Y++L+   C   +  + + KI  EM   G     + YNTI++G  K K
Sbjct: 285 KKFG-LVPDNVIYTVLMHGYCRNGNMLEAL-KIRDEMLEQGCVLDVIAYNTILNGLCKEK 342

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              + +  F  MVE G   PD +T  ++I  +   GN+ K    +       +K DI   
Sbjct: 343 MLTDADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAY 401

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   + + G  +K   + D M  R  FP  +TY I+I  +   GH+ +    +  M  
Sbjct: 402 NTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIE 461

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+KP  +T  +++  Y ++G   K D  L ++    V  D   +N +I+ + +  +++K
Sbjct: 462 KGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDK 521

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                  M++   +PD IT+  ++  +   G  + A+ +  KMI
Sbjct: 522 AFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMI 565



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 157/325 (48%), Gaps = 3/325 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           + ++  + +  F ++ S G   S++   +L+    +   ++ A+    ++   S  + +V
Sbjct: 60  QARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVR-SGIELNV 118

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YT +I++ +  K  +FD ++  L+EM   GI    VTYNT+I  Y +    EE     ++
Sbjct: 119 YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M + G   P +FT N++I+     G   + +    E   +G+  D  T N L     R  
Sbjct: 179 MADKG-LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRD 237

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
            + + + +   M ++   P +V+++ +I  F +  H+++   YF+ MK  G+ P+++ Y 
Sbjct: 238 NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYT 297

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+  Y + G +++   I  ++     +LD   +N I++   +   +    +LF  M ER
Sbjct: 298 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER 357

Query: 426 HCVPDNITFATMIQAYNALG-MTEA 449
             +PD  TF T+I  +   G MT+A
Sbjct: 358 GALPDFYTFTTLIHGHCQDGNMTKA 382



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 148/355 (41%), Gaps = 37/355 (10%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  +G+   +  Y  L+ AY + GLL+EAF  +N M      KP ++TY+ +I    K  
Sbjct: 144 MEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKG 202

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R+   + IL EM  +G+     TYNT++    +   F E +  F  M+  G   PD+ + 
Sbjct: 203 RYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSF 261

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-------------- 305
           +S+I+ +  + ++++   ++ +    G+  D     +L   Y R G              
Sbjct: 262 SSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLE 321

Query: 306 ---------------------MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                                M      + D M +R   P   T+  +I    + G++ K
Sbjct: 322 QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTK 381

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
               F  M  R +KP+ + Y +L+  + K G + K   +   + +  +  +   +  +I+
Sbjct: 382 ALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILIN 441

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           AY   G V +   L+  M E+   P  +T  T+I+ Y   G +  A     +MIA
Sbjct: 442 AYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIA 496



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 169/383 (44%), Gaps = 38/383 (9%)

Query: 85  LDEAIKQKKWQLALKIFG-LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           L E+ ++  +  A +IFG +LRQ         +F+ L+ +  + +  +QA + F  M   
Sbjct: 230 LVESCRRDNFSEAKEIFGEMLRQG--VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKF 287

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM----------------------KSVSDC 181
           GL P   +YT L+  Y ++G + EA    ++M                      K ++D 
Sbjct: 288 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDA 347

Query: 182 K------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                        PD YT++ LI    +         +   M+   I+   V YNT+IDG
Sbjct: 348 DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 407

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K  + E+    +  M+ S    P+  T   +I+AY + G++ +  + ++     G+K 
Sbjct: 408 FCKVGEMEKASELWDGMI-SRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 466

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            + T N + K Y R+G   K    +  M  +   P  ++YN +I  F +  +++K   + 
Sbjct: 467 TLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWI 526

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            KM+  G+ P+ ITY  +++ + + G + + + +LR++    +  D   +  +I+ +   
Sbjct: 527 NKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQ 586

Query: 410 GDVEKMGELFLTMKERHCVPDNI 432
            ++ +       M +R   PD++
Sbjct: 587 DNLNEAFRFHDEMLQRGFAPDDV 609



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 168/373 (45%), Gaps = 3/373 (0%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           ++ +K +   + F +LR +  Y         L+  L K    E A  +   ++  G++ +
Sbjct: 59  VQARKLREGTEAFRILRSKG-YLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELN 117

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V     +V+A  + G  D+  S +++M+  +    D+ TY+ LI +  +    +   +I+
Sbjct: 118 VYTLNIMVNALCKDGKFDDVKSFLSEMEG-NGIYADMVTYNTLIGAYCREGLLEEAFEIM 176

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M+  G++ S  TYN II+G  K  ++   +     M+  G   PD  T N+++     
Sbjct: 177 NSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG-LSPDTTTYNTLLVESCR 235

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
             N  + ++ + E    GV  D+ + + L   + R    D+       M+K    P  V 
Sbjct: 236 RDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVI 295

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y +++  + + G++ +  +   +M  +G   + I Y ++++   K  ++   D +  ++ 
Sbjct: 296 YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMV 355

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
               + D   F  +I  + Q G++ K   LF TM +R+  PD + + T+I  +  +G  E
Sbjct: 356 ERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEME 415

Query: 449 AAQNLENKMIAMK 461
            A  L + MI+ K
Sbjct: 416 KASELWDGMISRK 428



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 114 CQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           C T  K     G C+  +  +A      M++ G+ P    Y  L++ + +   +D+AF  
Sbjct: 471 CNTVIK-----GYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLW 525

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           IN M+      PD+ TY++++    +  R    E +L +M   GI     TY  +I+G+ 
Sbjct: 526 INKMEK-EGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHV 584

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIF 257
                 E       M++ G    D+F
Sbjct: 585 TQDNLNEAFRFHDEMLQRGFAPDDVF 610



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC-SLVSAYSKAGLIMKVDSILR 385
           + ++++I T+ +A  + +  E F+ ++ +G    SI  C SL+    K   +     + R
Sbjct: 49  LVFDLLIRTYVQARKLREGTEAFRILRSKGYLV-SINACNSLLGGLVKIDWVELAWEVHR 107

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           +V  S + L+    N +++A  + G  + +      M+      D +T+ T+I AY   G
Sbjct: 108 EVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREG 167

Query: 446 MTEAAQNLENKM 457
           + E A  + N M
Sbjct: 168 LLEEAFEIMNSM 179


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 165/329 (50%), Gaps = 11/329 (3%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            +++ M+   + P++  +  +++   + G L++A   ++DMK V    P+V TY+ LI  
Sbjct: 216 FVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMK-VWGFWPNVVTYNTLIDG 274

Query: 195 CTKFHRFDLIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
             K  R   + K   IL EM    +  ++VT+N +IDG+ K +        F  M +S G
Sbjct: 275 YCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM-QSQG 333

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P + T NS+++   N G + + +   +E     +K ++ T N L   Y +  + ++ R
Sbjct: 334 LKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEAR 393

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF---KKMKHRGMKPNSITYCSLV 368
            + D + K+   P V+T+N ++  + K G   KMEE F   K M  +G  PN+ TY  L+
Sbjct: 394 ELFDNIGKQGLTPNVITFNTLLHGYCKFG---KMEEAFLLQKVMLEKGFLPNASTYNCLI 450

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             + + G + +V ++L +++   V  DT  +N +ISA+ +  + +K   L   M ++   
Sbjct: 451 VGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLK 510

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
           P ++T+  ++  Y   G   AA NL  +M
Sbjct: 511 PSHLTYNILLNGYCMEGNLRAALNLRKQM 539



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 6/324 (1%)

Query: 68  VSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           V   K    WP  V     +D   K  +     K   +L++    +    + T  +++ G
Sbjct: 253 VDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDG 312

Query: 126 KCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
            CK    ++ L  FE M S GLKP+V  Y +LV+     G L+EA   +++M S S+ KP
Sbjct: 313 FCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS-SNLKP 371

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V TY+ LI    K    +   ++   +   G+  + +T+NT++ GY K  K EE     
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQ 431

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M+E G   P+  T N +I  +   G +E+++   NE    GVKAD  T NIL  ++  
Sbjct: 432 KVMLEKGFL-PNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCE 490

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
                K   ++D M  +   P+ +TYNI++  +   G++       K+M+  G   N +T
Sbjct: 491 KKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVT 550

Query: 364 YCSLVSAYSKAGLIMKVDSILRQV 387
           Y  L+  Y + G +   + +L ++
Sbjct: 551 YNVLIQGYCRKGKLEDANGLLNEM 574



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 156/340 (45%), Gaps = 12/340 (3%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +K++G       Y      + K+    G+  +  +A  + + M+ + + P+   +  L+ 
Sbjct: 256 MKVWGFWPNVVTYNTLIDGYCKM----GRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            + +   L  A     +M+S    KP V TY+ L+       + +  + +L EM    ++
Sbjct: 312 GFCKDENLSAALKVFEEMQS-QGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLK 370

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + +TYN +I+GY K K  EE    F   +   G  P++ T N+++  Y   G   KME+
Sbjct: 371 PNVITYNALINGYCKKKLLEEARELFDN-IGKQGLTPNVITFNTLLHGYCKFG---KMEE 426

Query: 278 WYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            +    +M   G   +  T N L   + R G  ++++++++ MQ R      VTYNI+I 
Sbjct: 427 AFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILIS 486

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +    +K      +M  +G+KP+ +TY  L++ Y   G +    ++ +Q+E      
Sbjct: 487 AWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWA 546

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           +   +N +I  Y + G +E    L   M E+  +P+  T+
Sbjct: 547 NVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 9/283 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +    ALK+F  + Q Q  +    T+  L+  L    +  +A +L + MLS  
Sbjct: 310 IDGFCKDENLSAALKVFEEM-QSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN 368

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD-- 202
           LKP+V  Y AL++ Y +  LL+EA    +++       P+V T++ L+    KF + +  
Sbjct: 369 LKPNVITYNALINGYCKKKLLEEARELFDNIGK-QGLTPNVITFNTLLHGYCKFGKMEEA 427

Query: 203 -LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
            L++K++ E  +L    +A TYN +I G+ +  K EE+++  + M +  G   D  T N 
Sbjct: 428 FLLQKVMLEKGFLP---NASTYNCLIVGFCREGKMEEVKNLLNEM-QCRGVKADTVTYNI 483

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +ISA+      +K  +  +E    G+K    T NIL   Y   G      ++   M+K  
Sbjct: 484 LISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEG 543

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            +  VVTYN++I+ + + G +E       +M  +G+ PN  TY
Sbjct: 544 RWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 14/297 (4%)

Query: 167 EAFSTINDMK---SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
           EAF    D +   SV  C P       L+ +  K + F  +E +  EM    I  + +T+
Sbjct: 181 EAFKRAGDYRYKLSVLSCNP-------LLSALVKENEFGGVEFVYKEMIRRKISPNLITF 233

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK---WYN 280
           NT+I+G  K  K  +       M +  G  P++ T N++I  Y   G + KM K      
Sbjct: 234 NTVINGLCKVGKLNKAGDVVDDM-KVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILK 292

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E     V  +  T N+L   + +         V + MQ +   PTVVTYN ++      G
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEG 352

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            + + +    +M    +KPN ITY +L++ Y K  L+ +   +   +    +  +   FN
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFN 412

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++  Y + G +E+   L   M E+  +P+  T+  +I  +   G  E  +NL N+M
Sbjct: 413 TLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEM 469



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 3/175 (1%)

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           K  + + N L  +  +   +  +  V   M +R   P ++T+N VI    K G + K  +
Sbjct: 192 KLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGD 251

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIIS 404
               MK  G  PN +TY +L+  Y K G +    K D+IL+++  + V  ++  FN +I 
Sbjct: 252 VVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + +  ++    ++F  M+ +   P  +T+ +++      G    A+ L ++M++
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS 366


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 159/348 (45%), Gaps = 3/348 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+  Y+A    FT L+ +  +  + + A  L + M S+     + +Y   +  +G+ G +
Sbjct: 230 QEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKV 289

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           D A+   ++MK+     PD  TY+ LI    K  R D   ++  E+           YNT
Sbjct: 290 DMAWKFFHEMKA-QGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I GYG A KF+E  S      +  GC P +   N +++  G  G +E+  + ++E    
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQ-KRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR-Q 406

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
               ++ T NIL     +AG  +    V D M++   FP ++T NI+I+   KA  +++ 
Sbjct: 407 DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEA 466

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              F  + H+   P+S T+CSL+    + G +    S+  ++ +SD I +   +  +I  
Sbjct: 467 CSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQN 526

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + + G  E   +++  M  R C PD +   + +      G  E  + L
Sbjct: 527 FFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRAL 574



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 169/356 (47%), Gaps = 3/356 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  + + ALK+   +++   +     T   ++  L K ++ ++A  +F  +    
Sbjct: 419 IDMLCKAGELEAALKVQDTMKEAGLF-PNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKV 477

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    + +L+   G+ G +D+A+S    M   SD  P+V  Y+ LI++  K  R +  
Sbjct: 478 CSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD-SDQIPNVVVYTSLIQNFFKCGRKEDG 536

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            KI  EM + G     +  N+ +D   KA + E+  + F   +++ G  PD+ + + +I 
Sbjct: 537 HKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEE-IKAQGLVPDVRSYSILIH 595

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +G   +  K + E    G+  D+   N +   + ++G  DK   +++ M+ +   P
Sbjct: 596 GLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQP 655

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           TVVTY  V++   K   +++    F++ K  G+  N + Y SL+  + K G I +   IL
Sbjct: 656 TVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLIL 715

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            ++    +  ++  +NC++ A  +A ++++    F  MK   C P+ +T++ MI  
Sbjct: 716 EELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMING 771



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 166/355 (46%), Gaps = 12/355 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ K + AL+I   +RQ         T+  L+ ML K  + E A  + + M   GL P++
Sbjct: 390 RKGKVEEALRIHDEMRQDA--APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNI 447

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD----LIE 205
                ++    ++  LDEA S    +     C PD  T+  LI    +  R D    L E
Sbjct: 448 MTVNIMIDRLCKAQKLDEACSIFLGLDH-KVCSPDSRTFCSLIDGLGRRGRVDDAYSLYE 506

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           K+L       +    V Y ++I  + K  + E+    +  MV  G C PD+  LNS +  
Sbjct: 507 KMLDSDQIPNV----VVYTSLIQNFFKCGRKEDGHKIYKEMVHRG-CSPDLMLLNSYMDC 561

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
              +G +EK    + E    G+  D+++ +IL     +AG   +   +   M+++     
Sbjct: 562 VFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLD 621

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V+ YN VI+ F K+G ++K  +  ++MK +G++P  +TY S+V   +K   + +   +  
Sbjct: 622 VLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFE 681

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + ++  V L+   ++ +I  +G+ G +++   +   + ++   P++ T+  ++ A
Sbjct: 682 EAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDA 736



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 154/342 (45%), Gaps = 3/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+ +L K ++ ++A  LFE +  +   P V  Y  ++  YG +G  DEA+S +   
Sbjct: 310 TYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C P V  Y+ ++    +  + +   +I  EM       +  TYN +ID   KA +
Sbjct: 370 KR-KGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAP-NLTTYNILIDMLCKAGE 427

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E        M E+G   P+I T+N MI     +  +++    +   +      D +T  
Sbjct: 428 LEAALKVQDTMKEAG-LFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFC 486

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L    GR G  D   S+ + M      P VV Y  +I+ F K G  E   + +K+M HR
Sbjct: 487 SLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHR 546

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+ +   S +    KAG + K  ++  +++   ++ D   ++ +I    +AG   + 
Sbjct: 547 GCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRET 606

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +LF  MKE+    D + + T+I  +   G  + A  L  +M
Sbjct: 607 YKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEM 648



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 154/341 (45%), Gaps = 3/341 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
            +L+    K  + ++A  + E+M     +P+   YT L+ A   +   D   +  + M+ 
Sbjct: 172 VELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQE 231

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           +   + +V+ ++ L++   +  R D    +L EM         V YN  ID +GK  K  
Sbjct: 232 IG-YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKV- 289

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +M   F   +++ G  PD  T  ++I     +  +++  + + E +L      +   N +
Sbjct: 290 DMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTM 349

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
              YG AG +D+  S+++  +++   P+V+ YN ++   G+ G +E+      +M+    
Sbjct: 350 IMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA- 408

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            PN  TY  L+    KAG +     +   ++ + +  +    N +I    +A  +++   
Sbjct: 409 APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +FL +  + C PD+ TF ++I      G  + A +L  KM+
Sbjct: 469 IFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKML 509



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 149/325 (45%), Gaps = 3/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  +++  G   + ++A  L E     G  PSV  Y  +++  G+ G ++EA    ++M
Sbjct: 345 AYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +   D  P++ TY+ILI    K    +   K+   M   G+  + +T N +ID   KA+K
Sbjct: 405 RQ--DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQK 462

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  S F  + +   C PD  T  S+I   G  G ++     Y +        ++    
Sbjct: 463 LDEACSIFLGL-DHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYT 521

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L +++ + G  +    +   M  R   P ++  N  ++   KAG +EK    F+++K +
Sbjct: 522 SLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQ 581

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+  +Y  L+    KAG   +   +  +++   + LD   +N +I  + ++G V+K 
Sbjct: 582 GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
            +L   MK +   P  +T+ +++  
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDG 666



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 148/325 (45%), Gaps = 2/325 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K  + E+   LFE + + GL P V  Y+ L+    ++G   E +    +MK       DV
Sbjct: 564 KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKE-QGLHLDV 622

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
             Y+ +I    K  + D   ++L EM   G++ + VTY +++DG  K  + +E    F  
Sbjct: 623 LAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEE 682

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
             +S G   ++   +S+I  +G  G I++      E    G+  +  T N L  +  +A 
Sbjct: 683 -AKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAE 741

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D+ +     M+     P  +TY+I+I          K   ++++M+ +G+KPN+ITY 
Sbjct: 742 EIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYT 801

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           ++++  +KAG +M+   +  + + S  + D+  +N +I     A        +F   + +
Sbjct: 802 TMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLK 861

Query: 426 HCVPDNITFATMIQAYNALGMTEAA 450
            C  ++ T   ++ A +     E A
Sbjct: 862 GCRVNSKTCVVLLDALHKADCLEQA 886



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+VY   +++ + T+    D +E+IL EMS  G   S      ++  + K+ K +E    
Sbjct: 133 PEVYNAFLMVMARTR--NLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGV 190

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M+      P      ++I A   +   + M   +++   +G +A++     L + + 
Sbjct: 191 IE-MMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFA 249

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G  D   S++D M+   F   +V YN+ I+ FGK G ++   ++F +MK +G+ P+ +
Sbjct: 250 REGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDV 309

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---FNCIISAYGQAGDVEKMGELF 419
           TY +L+    KA    ++D  +   E  D+    P    +N +I  YG AG  ++   L 
Sbjct: 310 TYTTLIGVLCKA---RRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLL 366

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              K + C+P  I +  ++      G  E A  + ++M
Sbjct: 367 ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404


>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 352

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSXKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia salsoloides]
          Length = 433

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 39/345 (11%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 177
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 178 ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
                        S   PD+  Y+  I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYST 122

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++  Y + KKF E  S FS + E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSELREMK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I A
Sbjct: 242 NNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 301

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 176/377 (46%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A ++ +G++ L  EA S I++M+
Sbjct: 50  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMR 109

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            ++   P+  +YS L+    +  +F     + +E+  +       T N +ID YG+    
Sbjct: 110 -IAGVMPNTASYSTLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMA 168

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 169 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 224

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 225 YNSMMMIYGKTLEHEKANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 284

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
             G++ + I + +++ AY +AGL+     +L ++++ D I  DT     I++  G+    
Sbjct: 285 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIH--ILAGAGRIEEA 342

Query: 409 ---------AGDV------EKMGELFLTMKERHCV-------------PDNITFATMIQA 440
                    AG+V      E+M  LF   K+   V             PD+   A ++ A
Sbjct: 343 TYVFRRAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNA 402

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   + A ++  +M
Sbjct: 403 YGKLHEFDKANSVYMEM 419



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 153/373 (41%), Gaps = 41/373 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +   + + GK K   +A  L   M   G+ P+   Y+ L+
Sbjct: 66  AISIFSRLKRSG-FTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLL 124

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++++ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 125 TMYVENKKFLEALSVFSELREMK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 184 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++  G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 244 LIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 303

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  ++     P  +  +  I     AG IE+    F++    G   +  
Sbjct: 304 RAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVKDIT 359

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K   +++ M
Sbjct: 360 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANSVYMEM 419

Query: 423 KERHCV-PDNITF 434
           +E  CV  D + F
Sbjct: 420 QEVGCVFSDEVHF 432



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 81/174 (46%)

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
               K    F ++K  G  P+ + Y + ++ + KA L  +  S++ ++  + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASY 120

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + +++ Y +     +   +F  ++E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 151/302 (50%), Gaps = 2/302 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           +L  GL+PS+  +T L++     G +D+     +DM  V   +P+VYTY+++I S +K  
Sbjct: 123 ILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDM-LVRGLQPNVYTYNVIINSLSKSG 181

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           + +     L +M  +G   + V Y+T+IDGY    + +E  S F  MV S GC P+++T 
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMV-SKGCTPNVYTY 240

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            S+++ Y     IE+  +  +E    G+  DI T   +     RAG     + +  ++  
Sbjct: 241 TSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA 300

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P ++TY ++++   K G++E+    F++M+   +KPN + Y  L+ +  K G I  
Sbjct: 301 HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKD 360

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +  ++ +  +  +   +  ++ A  + G + +  +LF  M+E  C PD   +  +IQ
Sbjct: 361 GKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQ 420

Query: 440 AY 441
            +
Sbjct: 421 GF 422



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 149/322 (46%), Gaps = 2/322 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  L    + +Q  +L++ ML  GL+P+V  Y  ++++  +SG  +EA   +  M
Sbjct: 134 TFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQM 193

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V  C P+V  YS LI       + D    +   M   G   +  TY ++++GY K ++
Sbjct: 194 EKVG-CVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIER 252

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE        +  G   PDI T  ++IS    +G     ++ +      G   +I T  
Sbjct: 253 IEEAVQLLDETLRKGLV-PDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYG 311

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L     + G  ++  ++   MQ+    P +V Y I+I++  K G I+  +E F ++   
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDE 371

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN  TY +LV A  K GLI++   + R++E      D   +N II  + Q  D    
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMA 431

Query: 416 GELFLTMKERHCVPDNITFATM 437
            +L   M  R    D  T A +
Sbjct: 432 RQLVEEMVNRGFSADAATRALL 453



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 126/275 (45%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  +S L  S  +   ++ +  +  E+ +LGIE    + + +I+ +    + +   S 
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
            S +++ G   P I T  ++++     G ++++   Y++  + G++ ++ T N++  S  
Sbjct: 120 LSKILKLG-LEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLS 178

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           ++G  ++    +  M+K    P VV Y+ +I+ +   G +++    F  M  +G  PN  
Sbjct: 179 KSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVY 238

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL++ Y K   I +   +L +     ++ D   F  IIS   +AG      +LF  +
Sbjct: 239 TYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYI 298

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 P+ +T+  ++      G  E A  L  +M
Sbjct: 299 CAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEM 333



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 35/206 (16%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P I   + + S+    G+ E +     E   +G++ DI +L+IL   +      D   SV
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +  + K    P++VT+  ++      G ++++   +  M  RG++PN  TY  ++++ SK
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +G   +    L+Q+E                         K+G          CVP+ + 
Sbjct: 180 SGKANEALGFLKQME-------------------------KVG----------CVPNVVN 204

Query: 434 FATMIQAYNALGMTEAAQNLENKMIA 459
           ++T+I  Y   G  + A+++ + M++
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVS 230


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 169/379 (44%), Gaps = 37/379 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L +    E+   +   M+  G  P + +Y  ++    + G L+ A   +N M
Sbjct: 301 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP+V  Y+ L+K      R++  E++LAEM         VT+N ++D + +   
Sbjct: 361 PSYG-LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGL 419

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM-------------------- 275
            + +      M+E G C PD+ T  ++I+ +   G I++                     
Sbjct: 420 VDRVIELLEQMLEHG-CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT 478

Query: 276 ---------EKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                    E+W +  +LM      G   +  T N L     + G+ ++   ++  M   
Sbjct: 479 IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN 538

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +++Y+ VI+  GKAG  ++  E    M ++GM PN+I Y S+ SA S+ G I KV
Sbjct: 539 GCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKV 598

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   ++++ +  D   +N +IS+  + G+ E+  E    M    CVP+  T+  +I+ 
Sbjct: 599 IQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 658

Query: 441 YNALGMTEAAQNLENKMIA 459
             + G  + AQ +  ++ +
Sbjct: 659 LASEGFVKEAQEMLTELCS 677



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 37/361 (10%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  + E + + G    V     +++A    G +DEA   + D+ S   C+PDV +Y+ ++
Sbjct: 213 AVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFG-CEPDVVSYNAVL 271

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           K      R+  +++++ EM  +    + VT+NT+I    +   FE +    + MVE G C
Sbjct: 272 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG-C 330

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-------------------- 292
            PDI    ++I      G++E   +  N     G+K ++                     
Sbjct: 331 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 390

Query: 293 ---------------TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
                          T NIL   + + G+ D++  +++ M +    P V+TY  VI  F 
Sbjct: 391 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFC 450

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G I++     K M   G KPN+I+Y  ++     A   +  + ++ Q+      L+  
Sbjct: 451 KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPI 510

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+   + G VE+  EL   M    C PD I+++T+I      G T+ A  L N M
Sbjct: 511 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM 570

Query: 458 I 458
           +
Sbjct: 571 V 571



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 140/315 (44%), Gaps = 2/315 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+   Y  +V A    G + +A + +++M     C P    Y +++++  +   F   
Sbjct: 155 VPPNAYTYFPVVRALCARGRIADALAVLDEMPR-RGCAPIPPMYHVILEAACRGGGFRSA 213

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L ++   G        N +++        +E       +  S GC PD+ + N+++ 
Sbjct: 214 VRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL-PSFGCEPDVVSYNAVLK 272

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +     +++   E   M    +I T N L     R G+++++  V+  M +    P
Sbjct: 273 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP 332

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +I+   K GH+E   E   +M   G+KPN + Y +L+     A    + + +L
Sbjct: 333 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 392

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ + D  LD   FN ++  + Q G V+++ EL   M E  C+PD IT+ T+I  +   
Sbjct: 393 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKE 452

Query: 445 GMTEAAQNLENKMIA 459
           G+ + A  L   M A
Sbjct: 453 GLIDEAVMLLKSMTA 467



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 4/235 (1%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN ++ GY +A + E      +A+       P+ +T   ++ A    G I       +E 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPVP----PNAYTYFPVVRALCARGRIADALAVLDEM 185

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G        +++ ++  R G +     V++ +  R     V   N+V+      G +
Sbjct: 186 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 245

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           ++     + +   G +P+ ++Y +++     A     V  ++ ++       +   FN +
Sbjct: 246 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 305

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           IS   + G  E++ E+   M E  C PD   +AT+I      G  E A  + N+M
Sbjct: 306 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +   Y RAG  +  R +   +      P   TY  V+      G I        +M  
Sbjct: 131 NAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 187

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG  P    Y  ++ A  + G       +L  +      LD    N +++A    G V++
Sbjct: 188 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 247

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              L   +    C PD +++  +++           Q L  +M+ M
Sbjct: 248 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 293


>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 426

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 164/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     I AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNXMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I     +   + AG I +   
Sbjct: 282 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 402 KLHEFDKANDVYMEM 416



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 154/366 (42%), Gaps = 40/366 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANN 240

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +++ G  P+  T +++IS +G  G +++    + +    GV  D      +  +Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +I I     AG IE+    F++    G   +  
Sbjct: 301 RAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 423 KERHCV 428
           +E  CV
Sbjct: 417 QEVGCV 422



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 137/275 (49%), Gaps = 1/275 (0%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY++++K      + +L EK++ EM+  GI+    T++T+I+   + ++ EE    F  
Sbjct: 144 YTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFER 203

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +S G  PD  T NS+I  YG  G + +  + Y +   +  K D  T   +   Y RAG
Sbjct: 204 M-KSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAG 262

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
            Y  +  ++  M+     P  V  N ++ T  KAG + + ++ F +M+  G+ P  +T  
Sbjct: 263 DYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLS 322

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            LV  Y++ G   +   +   ++      D   +N ++ A  + G VE+  ++   MK  
Sbjct: 323 ILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA 382

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            C PD++T+ T +  Y   GM + A+ + +K++A+
Sbjct: 383 GCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVAL 417



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 193/420 (45%), Gaps = 15/420 (3%)

Query: 13  TATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKK 72
           T+++ P+   E     + I R      +     E  K + K    E A+++ +K +S+K 
Sbjct: 52  TSSNTPEETGESSASAKTIPRYTKWTPQFARVDEVLKIVQKTGNVEAALESWDKSLSAKN 111

Query: 73  YKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQ-QWYQARCQTFTKLMVMLGKCKQPE 131
                   VL  ++      +W+ AL  F  L+ + + Y+    T+  ++ +L   +Q E
Sbjct: 112 IVT-----VLNNIN------RWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLE 160

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            +  L E M   G++P    ++ L++   +    +EA      MKS     PD  TY+ +
Sbjct: 161 LSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKS-EGIVPDEVTYNSV 219

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I    +  R +   ++  ++  +  +   VTY  I + Y +A  ++ +      M +SG 
Sbjct: 220 IDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGS 279

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+   +N+++     +G + + +K +NE    GV     TL+IL + Y R G YD+  
Sbjct: 280 -SPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAF 338

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V + ++   +   V  YN +++   + G +E+ E+  K+MK  G  P+ +TY + ++ Y
Sbjct: 339 EVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTY 398

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PD 430
           +  G++     +  +V   +   DTP F  +I A   AG++E+  ++F  M E  C  PD
Sbjct: 399 ATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPD 458


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 196/404 (48%), Gaps = 11/404 (2%)

Query: 59  FAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           F I + ++ ++S+   ++  +P    ++ +++ +  + +L  F L+   + +     +F 
Sbjct: 22  FTISSTQRNLNSE---SVCGRPRDAVINASLQSQLLEQSLDGFKLM-VLKGHSPSSFSFN 77

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS--AYGQSGLLDEAFSTINDMK 176
             + +L K    ++    F   L    +   DVY+  ++  A+ ++G + + F  +  M+
Sbjct: 78  NALDLLAKSGNLDRTWGFFTEYLG---RTQFDVYSFWITIKAFCENGNVSKGFELLAQME 134

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           ++    P+V+ Y+ILI++C +    D  + + + M  LG+  +   Y  +I+G+ K K +
Sbjct: 135 TMG-VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFK-KGY 192

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++        ++  G  P+++T NS+I+ Y   G +    K ++E +  GV  +  T NI
Sbjct: 193 KKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNI 252

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L     R G   K   +++ M++    PT  T+N++++     G ++K   Y +K+K  G
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P  +TY  L+S +SK G    V  ++R++E+  +      +  +++ + ++ D+EK  
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           E+F  MK    VPD  T+  +I      G    A  L   M+ M
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEM 416



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 165/361 (45%), Gaps = 4/361 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALV 156
           K F LL Q +        F   +++   C+  +  QA ++F  M   GL  +  +YT ++
Sbjct: 125 KGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMI 184

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + + + G   + F     MK V    P++YTY+ LI    +  +  L  K+  E+S  G+
Sbjct: 185 NGFFKKGYKKDGFELYQKMKLVG-VLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGV 243

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
            C+AVTYN +I G  +  +  + E     M +    +P   T N ++    N+G ++K  
Sbjct: 244 ACNAVTYNILIGGLCRKGQVSKAEGLLERM-KRAHINPTTRTFNMLMDGLCNTGQLDKAL 302

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
            +  +  L+G+   + T NIL   + + G    +  ++  M+ R   P+ VTY I++ TF
Sbjct: 303 SYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTF 362

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            ++  IEK  E F  MK  G+ P+  TY  L+      G +++   + + +    +  + 
Sbjct: 363 VRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPND 422

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I+ Y +  +  K  +    M +    P+  ++ + IQ     G +  A+ L  +
Sbjct: 423 VIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKE 482

Query: 457 M 457
           M
Sbjct: 483 M 483



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 7/277 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLS 142
           + E  +  K  LA K+F  + ++      C   T  +++ G C+  Q  +A  L E M  
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKRG---VACNAVTYNILIGGLCRKGQVSKAEGLLERMKR 275

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P+   +  L+     +G LD+A S +  +K +  C P + TY+ILI   +K     
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC-PTLVTYNILISGFSKVGNSS 334

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           ++ +++ EM   GI  S VTY  +++ + ++   E+    F  M +  G  PD  T   +
Sbjct: 335 VVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM-KRIGLVPDQHTYGVL 393

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I      GN+ +  K Y     M ++ +    N +   Y +     K    ++ M K   
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            P V +Y   I+   K G   + +   K+M   G+KP
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 1/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    +    +QA+ + E M + G +P +  Y  L     Q+G +DEAF   ++M
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEM 339

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +    PDV TY+ L+ +C K+       ++L EM   G++ + VT+N ++    K  K
Sbjct: 340 ERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGK 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE       + E G   PD+ T N++I AY  +GN+ K     +E    G+K D  TLN
Sbjct: 400 LEEALGKLEKIAEEG-LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  +   Y+    ++    +R F P  V+Y  V+  + K  + E     + +M  R
Sbjct: 459 TVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER 518

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+  TY +L+    +   + +    L +     ++ D   +N II AY + GD+E  
Sbjct: 519 KLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENA 578

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                 M E    PD +T  T++      G  + A  L
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKL 616



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 39/335 (11%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVD 150
           KW+ +     LL + +    +    T  +V+   CK+   E+A    E +  +GL P V 
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA- 209
            Y  L+ AY ++G + +AF+ +++M      K D +T + ++ +  K  R++  E++L  
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVG-KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHS 479

Query: 210 ---------EMSYLGIEC-------------------------SAVTYNTIIDGYGKAKK 235
                    E+SY  +                           S  TYNT+I G  + ++
Sbjct: 480 PPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMER 539

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     +  VE G   PD  T N +I AY   G++E   +++N+      K D+ T N
Sbjct: 540 LKEAIDKLNEFVEKGLV-PDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCN 598

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L       G  DK   + +   ++     V+TYN +I++  K G ++    +F  M+ +
Sbjct: 599 TLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVK 658

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           G++P++ TY  ++SA S+AG   +  ++L ++ +S
Sbjct: 659 GLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 1/297 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P    Y  L++A+ + G+L EA + +  MK      P   TY+ L+ +  +      
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKR-DGIAPTQPTYNTLVSAFARLGWIKQ 296

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             K++  M+  G E    TYN +  G  +A K +E       M   G   PD+ T N+++
Sbjct: 297 ATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLV 356

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A           +   E    GVK  + T NI+ KS  + G  ++    ++ + +    
Sbjct: 357 DACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V+TYN +I+ + KAG++ K      +M  +G+K ++ T  +++    K       + +
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           L        + D   +  +++AY +  + E    L+  M ER  +P   T+ T+I+ 
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 104/260 (40%), Gaps = 4/260 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F L+ +      +  TFT   V+   CK  + E A  L       G  P    Y  ++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVM 496

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           +AY +    + A    + M       P + TY+ LIK   +  R       L E    G+
Sbjct: 497 AAYFKEYNPEPALRLWDQMIE-RKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGL 555

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                TYN II  Y K    E      + MVE+    PD+ T N++++     G ++K  
Sbjct: 556 VPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS-FKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K +  +   G K D+ T N L +S  + G  D      D M+ +   P   TYN+V+   
Sbjct: 615 KLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSAL 674

Query: 337 GKAGHIEKMEEYFKKMKHRG 356
            +AG  E+      K+   G
Sbjct: 675 SEAGRSEEAHNMLHKLADSG 694



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 132/318 (41%), Gaps = 8/318 (2%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT----YSILIKSCTKFHRFD 202
           P+  +  A +SAY +  L   A   ++ ++     +P +       S L +S +   +  
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           L   +   +  L +  +  T+N ++  +       +  ++ S M +  G  PD  T N++
Sbjct: 193 L--DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTL 249

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++A+   G + +           G+     T N L  ++ R G   +   V++ M    F
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVD 381
            P + TYN++     +AG +++      +M+  G   P+ +TY +LV A  K        
Sbjct: 310 EPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDAL 369

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L ++ +  V       N ++ +  + G +E+       + E    PD IT+ T+I AY
Sbjct: 370 RLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429

Query: 442 NALGMTEAAQNLENKMIA 459
              G    A  L ++M+ 
Sbjct: 430 CKAGNVAKAFTLMDEMVG 447


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 55/378 (14%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++ G LR+ +  +     F+ L+    +   P+ A  L     + GL P  +  TAL+SA
Sbjct: 214 RLLGDLRESR-LEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
            G +G + EA +   +     + KP    Y+ L+K   +       E++L EMS  G+  
Sbjct: 273 LGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAP 332

Query: 219 SAVTYNTIIDGYGKAKKFE-------EMES-------------------------SFSAM 246
              TY+ ++D Y +A ++E       EME+                         +F+ +
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVL 392

Query: 247 VE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            E  + G  PD    N MI  +G    +      +N+    G++ D+ T N L  ++ + 
Sbjct: 393 REMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKG 452

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G +D+   + + M++    P   TYNI+I   G+  H E +E    +MK +G+ PN ITY
Sbjct: 453 GRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITY 512

Query: 365 CSLVSAYSKAGLIMK-VDSILRQVENSDVILDTP-FFNCIISAYGQAGDVEKMGELFLTM 422
            +LV  Y ++G   + +D I  +   +D +  +P  ++ +++AY Q G            
Sbjct: 513 TTLVDVYGRSGRYKEAIDCI--EAMKADGLKPSPTMYHALVNAYAQRG------------ 558

Query: 423 KERHCVPDNITFATMIQA 440
                 PD IT+ T+++A
Sbjct: 559 ----LRPDVITYTTLMKA 572



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 26/284 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 336 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM 395

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           ++ S  +PD + Y+++I +  K+    H  D   K+  E    GIE   VT+NT+ID + 
Sbjct: 396 QA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREE----GIEPDVVTWNTLIDAHC 450

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C P   T N MI+  G   + E +E   +E    G+  +I
Sbjct: 451 KGGRHDRAAELFEEMRESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G Y +    ++ M+     P+   Y+ ++  + +             
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ------------- 556

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
              RG++P+ ITY +L+ A  +     KV  I  ++  S    D
Sbjct: 557 ---RGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPD 597



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 43/323 (13%)

Query: 180 DCKPDVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 295
            +      A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K Y R         V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 408
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 409 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-- 481

Query: 441 YNALGMTEAAQNLENKMIAMKEN 463
            N LG  E  + +E  +  MKE 
Sbjct: 482 -NLLGEQEHWEGVEAMLSEMKEQ 503



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 94  WQLALKIFGLLRQQQWYQARC-QTFTKLMV-MLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           WQ   K F +LR+ Q    R  + F  +M+   GK      A   F  M  +G++P V  
Sbjct: 385 WQ---KAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVT 441

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  L+ A+ + G  D A     +M+  S+C P   TY+I+I    +   ++ +E +L+EM
Sbjct: 442 WNTLIDAHCKGGRHDRAAELFEEMRE-SNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEM 500

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------GCH 253
              G+  + +TY T++D YG++ +++E      AM   G                  G  
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLR 560

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           PD+ T  +++ A       +K+   Y E    G   D +   +L
Sbjct: 561 PDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 604


>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 426

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +G AK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M+HRG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSG-FMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKL 280



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 163/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G + L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I     +   + AG I +   
Sbjct: 282 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 402 KLHEFDKANDVYMEM 416



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 153/366 (41%), Gaps = 40/366 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + G  K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++  G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 241 LIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +I I     AG IE+    F++    G   +  
Sbjct: 301 RAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 423 KERHCV 428
           +E  CV
Sbjct: 417 QEVGCV 422



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ +  A L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 181/404 (44%), Gaps = 32/404 (7%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPK-----PVLEALDEAIKQKKWQL 96
           G+   A  DL   L     + + E+ +++ +     P       ++ A+ EA + ++   
Sbjct: 144 GVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPER--- 200

Query: 97  ALKIFGLLRQQQ--WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           AL+   LLRQ Q   Y+     FT L+  L +  + E A  L + +    L+P + +Y  
Sbjct: 201 ALE---LLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNV 257

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
            +  +G++G +D A+   +++KS    KPD  +Y+ +I    K  R    E++  +M   
Sbjct: 258 CIDCFGKAGNVDMAWKFFHELKS-QGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETE 316

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
                A  YNT+I GYG A +FE        + E  GC P + + NS+++  G      K
Sbjct: 317 RAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKER-GCIPSVVSFNSILTCLGKK---RK 372

Query: 275 MEKWYNEFNLMGVKADIQ--TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           +++    F  M   A+    T NI+      AG  ++   + D M+    FP ++T NI+
Sbjct: 373 VDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIM 432

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++   KA   E   E F+    RG  PNS+TYCSL+    K G    VD   R  EN   
Sbjct: 433 VDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKG---NVDDAYRLFEN--- 486

Query: 393 ILDTP------FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +LDT        +  +I  +   G  E   ++F  M  R C PD
Sbjct: 487 MLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPD 530



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 162/336 (48%), Gaps = 5/336 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F  ++  LGK ++ ++A  LFE M  D  +P+   Y  ++     +G ++EA+   ++M
Sbjct: 359 SFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEM 417

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  +   P++ T +I++    K  +F+   ++    S  G   ++VTY ++IDG GK   
Sbjct: 418 EH-AGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGN 476

Query: 236 FEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            ++    F  M+++G   +P ++T  S+I  +   G  E   K + E N  G + D+  L
Sbjct: 477 VDDAYRLFENMLDTGHNANPVVYT--SLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLL 534

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N       +AG  +K R++ + ++   F P V +Y+I+I    KAG   +    F  MK 
Sbjct: 535 NTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 594

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G   ++  Y ++V  + K+G + K   +L +++   V      +  II    +   +++
Sbjct: 595 QGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDE 654

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              LF   K +    + I ++++I  +  +G  + A
Sbjct: 655 AYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 690



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 6/352 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPS 148
           K  +   A ++FG +  ++     C      M+M  G   Q E A  L + +   G  PS
Sbjct: 299 KAGRLSEAEELFGQMETER--AVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPS 356

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  + ++++  G+   +DEA +    MK   D +P+  TY+I+I       + +    I 
Sbjct: 357 VVSFNSILTCLGKKRKVDEALTLFEAMKK--DAEPNSSTYNIIIDMLCMAGKVEEAYMIR 414

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM + G+  + +T N ++D   KAKKFE     F    + G C+P+  T  S+I   G 
Sbjct: 415 DEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG-CNPNSVTYCSLIDGLGK 473

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            GN++   + +      G  A+      L +++   G  +    +   M +R   P +  
Sbjct: 474 KGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTL 533

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            N  ++   KAG +EK    F+ +K  G  P+  +Y  L+   +KAG   +  SI   ++
Sbjct: 534 LNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMK 593

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                LD   +N ++  + ++G ++K  E+   MK +   P   T+ ++I  
Sbjct: 594 QQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDG 645



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 170/388 (43%), Gaps = 40/388 (10%)

Query: 78  PKPVLEALDEA-IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           P P    L  A ++ ++   A ++   +R+ ++  A    +T L+  + + +QPE+A  L
Sbjct: 146 PNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPA-FSAYTVLIGAMAEARQPERALEL 204

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
              M   G +  V ++T LV A  + G ++ A + ++++K  S  +PD+           
Sbjct: 205 LRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKG-SCLEPDI----------- 252

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
                                   V YN  ID +GKA   + M   F   ++S G  PD 
Sbjct: 253 ------------------------VLYNVCIDCFGKAGNVD-MAWKFFHELKSQGLKPDD 287

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            +  SMI     +G + + E+ + +             N +   YG AG ++    ++D 
Sbjct: 288 VSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQ 347

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           +++R   P+VV++N ++   GK   +++    F+ MK +  +PNS TY  ++     AG 
Sbjct: 348 LKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK-KDAEPNSSTYNIIIDMLCMAGK 406

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + +   I  ++E++ +  +    N ++    +A   E   E+F T  +R C P+++T+ +
Sbjct: 407 VEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCS 466

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENS 464
           +I      G  + A  L   M+    N+
Sbjct: 467 LIDGLGKKGNVDDAYRLFENMLDTGHNA 494



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
           H    +EK+L EMS LG          ++    + ++ ++ E   +AM       P    
Sbjct: 126 HDLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAM-RRLKFRPAFSA 184

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
              +I A   +   E+  +   +   +G +  +     L ++  R G  +   +++D ++
Sbjct: 185 YTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVK 244

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P +V YN+ I+ FGKAG+++   ++F ++K +G+KP+ ++Y S++    KAG + 
Sbjct: 245 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLS 304

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           + + +  Q+E    +     +N +I  YG AG  E   +L   +KER C+P  ++F +++
Sbjct: 305 EAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSIL 364



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 162/404 (40%), Gaps = 41/404 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K KK++ A ++F     Q+       T+  L+  LGK    + A  LFE ML  G
Sbjct: 433 VDRLCKAKKFEPAYEMFET-ASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTG 491

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK------------SVSDCK---------- 182
              +  VYT+L+  +   G  ++      +M             +  DC           
Sbjct: 492 HNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGR 551

Query: 183 ------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
                       PDV +YSILI   TK  +      I   M   G    A  YN ++DG+
Sbjct: 552 AIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGF 611

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K+ K ++       M +     P + T  S+I        +++    + E    G++ +
Sbjct: 612 CKSGKLDKAYEVLEEM-KVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELN 670

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +   + L   +G+ G  D+   +++ M K+   P V T+N +++   KA  I +    F+
Sbjct: 671 VIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQ 730

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            MK     PN+ TY  L++   +     K     ++++   ++ +   +  +I+   + G
Sbjct: 731 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVG 790

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           ++     LF   K     PD  +F  +I+     GM+ A + +E
Sbjct: 791 NITDACSLFERFKANGGTPDAASFNALIE-----GMSHANRAIE 829



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 150/357 (42%), Gaps = 44/357 (12%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++++ L+  L K  Q  + S +F  M   G       Y A+V  + +SG LD+A+  + +
Sbjct: 567 RSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEE 626

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK V    P V TY  +I    K  R D    +  E    GIE + + Y+++IDG+GK  
Sbjct: 627 MK-VKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVG 685

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD-IQT 293
           + +E       M++ G   P+++T NS++ A                     VKA+ I  
Sbjct: 686 RIDEAYLILEEMMKKG-LTPNVYTWNSLMDAL--------------------VKAEEINE 724

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
             I  +S                M++    P   TY+I+I    +     K   ++++M+
Sbjct: 725 ALICFQS----------------MKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQ 768

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G+ PN +TY ++++  +K G I    S+  + + +    D   FN +I     A    
Sbjct: 769 KQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAI 828

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           +   +F   + + C    I     I   +AL   E  +  +  ++   EN+ +   Q
Sbjct: 829 EAYHVFEETRLKGC---RINVKACISLLDALNKAECLE--QAAVVGFGENTVRHFFQ 880



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 86/189 (45%)

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           S ++  MEK   E +++G          L  +  R    D    V+  M++  F P    
Sbjct: 125 SHDLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSA 184

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y ++I    +A   E+  E  ++M+  G +     + +LV A ++ G +    +++ +V+
Sbjct: 185 YTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVK 244

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            S +  D   +N  I  +G+AG+V+   + F  +K +   PD++++ +MI      G   
Sbjct: 245 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLS 304

Query: 449 AAQNLENKM 457
            A+ L  +M
Sbjct: 305 EAEELFGQM 313


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 166/364 (45%), Gaps = 38/364 (10%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG  ++  +A  LF E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 255 RSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQV 314

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT--------- 222
           +++M S     PD  TYS+L+ + T+  R++    +L EM   G++ S+           
Sbjct: 315 LDEM-SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 373

Query: 223 --------------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
                                     YN +ID +GK         +F  M E G   PD+
Sbjct: 374 DRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG-IEPDV 432

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T N++I A+   G  ++  + ++E           T NI+    G    ++ + +++  
Sbjct: 433 VTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAE 492

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL
Sbjct: 493 MKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGL 552

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                ++++ +    +   T   N +I+A+G+   + +   +   MKE    PD IT+ T
Sbjct: 553 ADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTT 612

Query: 437 MIQA 440
           +++A
Sbjct: 613 LMKA 616



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 1/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ L+    + + P+ A  L     + GL P  +  TAL+S+ G +  + EA +   +  
Sbjct: 224 FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFF 283

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
              + KP    Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++
Sbjct: 284 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 343

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E        M E+ G  P  +  + +++ + + G  +K      E +  GV+ D    N+
Sbjct: 344 ESARILLKEM-EADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNV 402

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +  ++G+           D M++    P VVT+N +I+   K G  ++  E F +M+   
Sbjct: 403 MIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 462

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
               + TY  +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  
Sbjct: 463 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 522

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +    MK     P    +  ++ AY   G+ + A N+   M A
Sbjct: 523 DCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 565



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 157/352 (44%), Gaps = 7/352 (1%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS---LLFEVMLSDGLKPSVDVYTA 154
           L++ GLLR+   +     +++ L+ +L   + P +A+    L   +    L+P   +++ 
Sbjct: 168 LRLLGLLREHS-FLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSD 226

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+SA+ ++ L D A   +   +++    P     + LI S     R    E +  E    
Sbjct: 227 LISAFARARLPDAALELLASAQAIG-LTPRSNAVTALISSLGSARRVAEAEALFLEFFLA 285

Query: 215 G-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           G I+     YN ++ GY K    +  E     M +  G  PD  T + ++ AY  +G  E
Sbjct: 286 GEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC-GVAPDEATYSLLVDAYTRAGRWE 344

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                  E    GVK      + +   +   G + K  +V+  M      P    YN++I
Sbjct: 345 SARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMI 404

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           +TFGK   +    + F +M+  G++P+ +T+ +L+ A+ K G   +   +  ++  S+  
Sbjct: 405 DTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCP 464

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           L T  +N +I+  G+    E +  +   MKE+  VP+ IT+ T++  Y   G
Sbjct: 465 LGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 516



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 156/329 (47%), Gaps = 10/329 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 329 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREM 388

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            + S  +PD + Y+++I +  K+    H  D  +++  E    GIE   VT+NT+ID + 
Sbjct: 389 HA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE----GIEPDVVTWNTLIDAHC 443

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C     T N MI+  G     E +E    E    G+  +I
Sbjct: 444 KGGRHDRAIELFDEMRESN-CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 502

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G + +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 503 ITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 562

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G++ +++   SL++A+ +   I +  S+L+ ++ + +  D   +  ++ A  +   
Sbjct: 563 MRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 622

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQA 440
            EK+  ++  M    C PD    A +  A
Sbjct: 623 FEKVPVIYEEMITSGCAPDRKARAMLRSA 651



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 7/282 (2%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARC-QTFTKLMV-MLGKCKQPEQASLLFEVMLSDGLKPS 148
           + +WQ   K F +LR+      R  + F  +M+   GK      A   F+ M  +G++P 
Sbjct: 375 RGEWQ---KAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPD 431

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  +  L+ A+ + G  D A    ++M+  S+C     TY+I+I    +  R++ +E +L
Sbjct: 432 VVTWNTLIDAHCKGGRHDRAIELFDEMRE-SNCPLGTTTYNIMINLLGEEQRWEGVEAML 490

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AEM   G+  + +TY T++D YG++ +F+E      AM ++ G  P     +++++AY  
Sbjct: 491 AEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM-KADGLKPSPTMYHALVNAYAQ 549

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  +            G++A    LN L  ++G      +  SV+ FM++    P V+T
Sbjct: 550 RGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVIT 609

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           Y  +++   +    EK+   +++M   G  P+      L SA
Sbjct: 610 YTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSA 651



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 126/285 (44%), Gaps = 3/285 (1%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G A++  E
Sbjct: 215 SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 274

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            E+ F     +G   P     N+++  Y   G+++  E+  +E +  GV  D  T ++L 
Sbjct: 275 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++M   G++
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   Y  ++  + K   +        ++    +  D   +N +I A+ + G  ++  EL
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           F  M+E +C     T+  MI   N LG  +  + +E  +  MKE 
Sbjct: 455 FDEMRESNCPLGTTTYNIMI---NLLGEEQRWEGVEAMLAEMKEQ 496


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 173/359 (48%), Gaps = 4/359 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR  +    R        ++ G CK     +A  L+  M + G+ P+V  Y+ L+  + 
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFC 196

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G L EAF  +N+M  + +  P+VYTY+IL+ +  K  +    + +LA M+  G++ + 
Sbjct: 197 LAGQLMEAFGLLNEM-ILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNV 255

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           V+YNT++DGY    + +  +  F  MV+ G  +P++++ N MI     S  +++      
Sbjct: 256 VSYNTLMDGYCLIGEVQNAKQMFHTMVQKG-VNPNVYSYNIMIDRLCKSKRVDEAMNLLR 314

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E     +  +  T + L   + + G       ++  M  R     VVTY  +++   K  
Sbjct: 315 EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQ 374

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           +++K    F KMK RG++PN  TY +L+    K G       + + +      ++   +N
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +IS   + G +++   +   M+E  C+PD +TF  +I++       + A+ L ++MIA
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIA 493



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 160/348 (45%), Gaps = 10/348 (2%)

Query: 110 YQARCQTFTKLMVMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           YQ    T   LM   G C + E + SL F + +++ G +     Y  L++   + G   E
Sbjct: 76  YQPNTITLNTLMK--GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG---E 130

Query: 168 AFSTINDMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             S +  ++ + D   +P+V  Y+ +I    K    +    + +EM   GI  + +TY+T
Sbjct: 131 TRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYST 190

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I G+  A +  E     + M+     +P+++T   ++ A    G +++ +         
Sbjct: 191 LIYGFCLAGQLMEAFGLLNEMILKN-INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GVK ++ + N L   Y   G     + +   M ++   P V +YNI+I+   K+  +++ 
Sbjct: 250 GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEA 309

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
               +++ H+ M PN++TY SL+  + K G I     +L+++ +     D   +  ++ A
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDA 369

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +  +++K   LF+ MKER   P+  T+  +I      G  + AQ L
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKL 417



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 159/350 (45%), Gaps = 2/350 (0%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Q +Q    ++  L+  L K  +   A  L  ++     +P+V +Y  ++    +  L++E
Sbjct: 109 QGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNE 168

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A+   ++M +     P+V TYS LI       +      +L EM    I  +  TY  ++
Sbjct: 169 AYDLYSEMDA-RGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILM 227

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           D   K  K +E ++  + M + G   P++ + N+++  Y   G ++  ++ ++     GV
Sbjct: 228 DALCKEGKVKEAKNLLAVMTKEG-VKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGV 286

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             ++ + NI+     ++   D+  +++  +  +   P  VTY+ +I+ F K G I    +
Sbjct: 287 NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALD 346

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             K+M HRG   + +TY SL+ A  K   + K  ++  +++   +  +   +  +I    
Sbjct: 347 LLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLC 406

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + G  +   +LF  +  + C  +  T+  MI      GM + A  +++KM
Sbjct: 407 KGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKM 456



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 158/352 (44%), Gaps = 24/352 (6%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K    A  LF+ M   G++P +     L++ +   G +  +F+ +  + 
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
            +   +P+  T + L+K  C K        FH     +K++A+    G +   V+Y T++
Sbjct: 73  KLG-YQPNTITLNTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMDQVSYATLL 122

Query: 228 DGYGKAKKFEEMESSFS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +G  K     E  S+     M+E     P++   N++I        + +    Y+E +  
Sbjct: 123 NGLCK---IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDAR 179

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+  ++ T + L   +  AG   +   +++ M  +   P V TY I+++   K G +++ 
Sbjct: 180 GIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEA 239

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +     M   G+KPN ++Y +L+  Y   G +     +   +    V  +   +N +I  
Sbjct: 240 KNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDR 299

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             ++  V++   L   +  ++ VP+ +T++++I  +  LG   +A +L  +M
Sbjct: 300 LCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEM 351



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 124/272 (45%), Gaps = 10/272 (3%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTAL 155
           ++ FGLL +          +T  ++M   CK+ +  +A  L  VM  +G+KP+V  Y  L
Sbjct: 202 MEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 156 VSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           +  Y   G +  A    + M  K V+   P+VY+Y+I+I    K  R D    +L E+ +
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVN---PNVYSYNIMIDRLCKSKRVDEAMNLLREVLH 318

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNI 272
             +  + VTY+++IDG+ K  +          M   G   P D+ T  S++ A   + N+
Sbjct: 319 KNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRG--QPADVVTYTSLLDALCKNQNL 376

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           +K    + +    G++ +  T   L     + G +   + +   +  +     V TYN++
Sbjct: 377 DKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVM 436

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           I    K G +++      KM+  G  P+++T+
Sbjct: 437 ISGLCKEGMLDEALAMKSKMEENGCIPDAVTF 468



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 126/278 (45%), Gaps = 5/278 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  ++ ++ S  K   +     +  +M   GIE    T N +I+ +       +M  S
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCH---LGQMTFS 64

Query: 243 FSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           F+ +  +   G  P+  TLN+++      G ++K   ++++    G + D  +   L   
Sbjct: 65  FTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNG 124

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G       ++  ++ R   P VV YN +I+   K   + +  + + +M  RG+ PN
Sbjct: 125 LCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ITY +L+  +  AG +M+   +L ++   ++  +   +  ++ A  + G V++   L  
Sbjct: 185 VITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA 244

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            M +    P+ +++ T++  Y  +G  + A+ + + M+
Sbjct: 245 VMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMV 282


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 15/388 (3%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQA-------------RCQTFTKLMVMLGKCKQ 129
           + +++ +    ++  L I GLLR ++W  A                T+  L+  L K ++
Sbjct: 351 QMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQK 410

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
             +A  L++ M   G+KPS+  Y +L+  Y + G +DEA    ++M       P+  TY+
Sbjct: 411 LHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPD-KGFPPNEVTYT 469

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            L+K   K   FD    +L EM   G+ C   TYN +I+G     +  E++      + S
Sbjct: 470 TLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFL-S 528

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  P   T NS+I+ +  +G +      Y +    G+  +I T       Y R    D 
Sbjct: 529 EGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDL 588

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              ++ ++++    P +  YN  I+TF K G++ +   +   +   G+ P+   Y S V+
Sbjct: 589 AVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVT 648

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            Y    ++ +       +    V+ DT  +  +I  + + G+V    EL+  M   H +P
Sbjct: 649 GYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIP 708

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D+ TF  +       G  + A+ L + M
Sbjct: 709 DDKTFTALTHGLCRSGDIDGAKRLLDDM 736



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 152/378 (40%), Gaps = 46/378 (12%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF--------- 169
           M+M G C   E  +A  LF+ ++SDG+ P+   Y  L+      G+ DE +         
Sbjct: 296 MLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQ 355

Query: 170 -----------------------STINDMKSVSDCK-PDVYTYSILIKSCTKFHRFDLIE 205
                                    I  +K V D   PDV+TY  LI    K  +     
Sbjct: 356 GLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAV 415

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +  +M   G++ S VTY++++ GY +  + +E    +S M + G   P+  T  +++  
Sbjct: 416 NLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKG-FPPNEVTYTTLMKG 474

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-MDFMQKRF--- 321
           Y      +      NE    GV     T NIL       G+Y   R   +D M KRF   
Sbjct: 475 YIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN-----GLYMVNRVCEVDEMLKRFLSE 529

Query: 322 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F PT +TYN +I  F KAG +      +++M+ +G+ PN +TY S +  Y +       
Sbjct: 530 GFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLA 589

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L  V    +  D   +N  I  + + G++ +     + + +    PD   + + +  
Sbjct: 590 VKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTG 649

Query: 441 YNALGMTEAAQNLENKMI 458
           Y  L M   A      MI
Sbjct: 650 YKNLKMMAEASKFYYSMI 667



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 7/316 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG--KCKQPEQASLLFEVMLSDGLK 146
           IK+K +  A   + LL + +     C  +T  +++ G     +  +   + +  LS+G  
Sbjct: 476 IKKKAFDNA---YALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFV 532

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+   Y ++++ + ++G++  AF     M+      P++ TY+  I    + +  DL  K
Sbjct: 533 PTTMTYNSIINGFVKAGMMGSAFGMYRQMRK-KGITPNIVTYTSFIDGYCRTNCCDLAVK 591

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L  +   GI+     YN  ID + K          F  ++   G  PD+   NS ++ Y
Sbjct: 592 LLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSR-ALHFLVLLLKDGLTPDVTVYNSFVTGY 650

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            N   + +  K+Y       V AD +    L   + + G       +   M      P  
Sbjct: 651 KNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDD 710

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T+  +     ++G I+  +     M+   + PN +TY  L++A  + G + +   +  +
Sbjct: 711 KTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDE 770

Query: 387 VENSDVILDTPFFNCI 402
           + +S V+ D   ++ +
Sbjct: 771 MLSSGVVPDDTTYDIL 786



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 145/340 (42%), Gaps = 2/340 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           T L+V          A  LF+ M   G      +Y  ++ A  + G+  +A    ++M  
Sbjct: 154 TDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAG 213

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            +  KPD   Y+I I    K    D   ++L +M   G E   +TY++++D   K ++ +
Sbjct: 214 -AGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMD 272

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E       M+ + G   D+     ++  Y  +G + K    ++E    GV     T  +L
Sbjct: 273 EALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVL 332

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K     GM D+   +   M ++   P+   +N+VI+   +    +      K +   G+
Sbjct: 333 IKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGV 392

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P+  TY  L+    K   + +  ++  +++ + V      ++ ++  Y + G +++  +
Sbjct: 393 -PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALK 451

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           L+  M ++   P+ +T+ T+++ Y      + A  L N+M
Sbjct: 452 LYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEM 491



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 10/221 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           +S MV + G  PD  +   ++       +       ++E    G  AD +  +++ ++  
Sbjct: 138 YSRMV-TRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACV 196

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R GM+     + D M      P    Y I I    K    ++  +   KM+  G +P  +
Sbjct: 197 RGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWEL 256

Query: 363 TYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           TY S+V    K       L +K   +L   +  DV+L T     ++  Y   G+V K  +
Sbjct: 257 TYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLAT----MLMHGYCLNGEVGKALD 312

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           LF  +      P N+T+  +I+  +A GMT+    L  +MI
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMI 353



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 4/237 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG+ RQ +         T    + G C+    + A  L   +  DG++P +  Y A +  
Sbjct: 555 FGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDT 614

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G +  A   +  +       PDV  Y+  +             K    M    +  
Sbjct: 615 FCKQGNMSRALHFLVLLLK-DGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVA 673

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
               Y T+IDG+ K          +S M+ +    PD  T  ++      SG+I+  ++ 
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMM-ANHVIPDDKTFTALTHGLCRSGDIDGAKRL 732

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            ++   + V  +I T N+L  +  R G   +   + D M      P   TY+I+  T
Sbjct: 733 LDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 165/347 (47%), Gaps = 2/347 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  Y+    TFT L+  L    +  +A  L + M+  G +P++  Y  +V+   + G +D
Sbjct: 107 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 166

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+ +N M++ +  + DV  ++ +I S  K+   D    +  EM   GI  + VTY+++
Sbjct: 167 LAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 225

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I       ++ +     S M+E    +P++ T N++I A+   G   + EK +++     
Sbjct: 226 ISCLCSYGRWSDASQLLSDMIEKK-INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 284

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  DI T N L   +      DK + + +FM  +  FP + TYN +I+ F K+  +E   
Sbjct: 285 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 344

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M HRG+  +++TY +L+      G       + +Q+ +  V  D   ++ ++   
Sbjct: 345 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 404

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              G +EK  E+F  M++     D   + TMI+     G  +   +L
Sbjct: 405 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 451



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 3/351 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +    AL +F  + + +  +    T++ L+  L    +   AS L   M+   
Sbjct: 191 IDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ LI       R D  
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSLINGFCMHDRLDKA 308

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +++   M          TYNT+I G+ K+K+ E+    F  M   G    D  T  ++I 
Sbjct: 309 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQ 367

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
              + G+ +  +K + +    GV  DI T +IL       G  +K   V D+MQK     
Sbjct: 368 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 427

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S      L+ +  ++L
Sbjct: 428 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 487

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++++    + D+  +N +I A+ + GD     EL   M+    V D  T  
Sbjct: 488 KKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG 538



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 38/371 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           K KK+ L + +  L +  +  Y+    T + L+      K+   A  L + M+  G +P 
Sbjct: 54  KMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 113

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              +T L+          EA + ++ M     C+P++ TY +++    K    DL   +L
Sbjct: 114 TITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 172

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M    IE   V +NTIID   K +  ++  + F  M E+ G  P++ T +S+IS   +
Sbjct: 173 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCS 231

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G      +W +   L+                             D ++K+   P +VT
Sbjct: 232 YG------RWSDASQLLS----------------------------DMIEKKIN-PNLVT 256

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           +N +I+ F K G   + E+    M  R + P+  TY SL++ +     + K   +   + 
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 316

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           + D   D   +N +I  + ++  VE   ELF  M  R  V D +T+ T+IQ     G  +
Sbjct: 317 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 376

Query: 449 AAQNLENKMIA 459
            AQ +  +M++
Sbjct: 377 NAQKVFKQMVS 387



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 15/242 (6%)

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL----- 284
           +GK  K ++    F  MV+S    P IF  N ++SA      I KM+K+    +L     
Sbjct: 17  WGKDLKLDDAIGLFGGMVKSRPL-PSIFEFNKLLSA------IAKMKKFDLVISLALLGK 69

Query: 285 ---MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              +G +  I TL+ L   Y          +++D M +  + P  +T+  +I        
Sbjct: 70  MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 129

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
             +      +M  RG +PN +TY  +V+   K G I    ++L ++E + +  D   FN 
Sbjct: 130 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 189

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI  K
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 462 EN 463
            N
Sbjct: 250 IN 251


>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 426

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSXFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSXFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +    F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 201/443 (45%), Gaps = 53/443 (11%)

Query: 60  AIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK 119
           A+ N+ KK    + + +   P+L+ L      K+   A+ I  +LR+          F+ 
Sbjct: 109 ALGNVVKK--GFRVEAITFTPLLKGL---CADKRTSDAMDI--VLRRMTELSCMPDVFSC 161

Query: 120 LMVMLGKCKQ--PEQASLLFEVMLSD---GLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            +++ G C +   ++A  L  +M  D   G  P V  YT +++ + + G  D+A+ST ++
Sbjct: 162 TILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHE 221

Query: 175 M--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           M  + +S   PDV TYS +I +  K    D   ++L  M   G+  + +TYN+I+ GY  
Sbjct: 222 MLDRRIS---PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCS 278

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           +++ +E    F   + S G  PD+ T NS++     +G   +  K ++     G++ DI 
Sbjct: 279 SEQPKE-AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIA 337

Query: 293 TLNILTKSYGRAGMYDKMRSVMDF-----------------------------------M 317
           T   L + Y   G   +M +++D                                    M
Sbjct: 338 TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKM 397

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++    P VVTY  VI    K+G ++    YF++M   G+ PN I Y SL+ +       
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P+ IT++T+
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 438 IQAYNALGMTEAAQNLENKMIAM 460
           I  Y   G  + A  L + M ++
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSV 540



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 150/328 (45%), Gaps = 8/328 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    K ++ ++A L+F  M   GL P+V  Y A++    +SG +D+A      
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P++  Y+ LI S   F ++D  E+++ EM   GI  + + +N+II  + K  
Sbjct: 432 MID-EGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEG 490

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E E  F  MV  G   P++ T +++I  Y  +G +++  K  +    +G+K D  T 
Sbjct: 491 RVIESEKLFDLMVRIG-VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y R    D   ++   M      P ++TYNI+++           +E +  +  
Sbjct: 550 NTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITK 609

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGD 411
            G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G 
Sbjct: 610 SGTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQ 439
            ++  +LF  +     VPD  T++ M +
Sbjct: 667 NDEAKDLFAALSANGLVPDVRTYSLMAE 694



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 160/372 (43%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ+K   A+ +F  +RQ         T+  ++ +L K    + A L FE M+ +GL P++
Sbjct: 383 KQEKVDEAMLVFSKMRQHGL-NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNI 441

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VYT+L+ +       D+A   I +M     C                            
Sbjct: 442 IVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDL 501

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KP+V TYS LI       + D   K+L+ M  +G++   VTYNT+I+GY +  +
Sbjct: 502 MVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSR 561

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F  MV SG   P+I T N ++    ++      ++ Y      G + ++ T N
Sbjct: 562 MDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F  +  
Sbjct: 621 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSA 679

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + GL+ ++D +   +E +    ++   N I+    Q GD+ +
Sbjct: 680 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 739

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 740 AGTYLSMIDEKH 751



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 179 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             C PDV++ +IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  S++  M++     PD+ T +S+I+A      ++K  +        GV  +  T N
Sbjct: 212 SDKAYSTYHEMLDR-RISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270

Query: 296 ILTKSYGRA-------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            +   Y  +       G   KMRS  D ++     P VVTYN +++   K G   +  + 
Sbjct: 271 SILHGYCSSEQPKEAIGFLKKMRS--DGVE-----PDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F  M  RG++P+  TYC+L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAK 383

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMI 438
              V++   +F  M++    P+ +T+  +I
Sbjct: 384 QEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 133/352 (37%), Gaps = 43/352 (12%)

Query: 131 EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--PDVYT 187
           E A  +FE +L  G   S+  +  AL      S     A S  N M      K  P V+T
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARHSPA--AAVSRYNRMARAGAGKVTPTVHT 89

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE--------- 238
           Y ILI  C +  R DL    L  +   G    A+T+  ++ G    K+  +         
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 239 -----MESSFSAMV------------------------ESGGCHPDIFTLNSMISAYGNS 269
                M   FS  +                          GG  PD+ +  ++I+ +   
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKE 209

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G+ +K    Y+E     +  D+ T + +  +  +    DK   V+  M K    P  +TY
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++  +  +   ++   + KKM+  G++P+ +TY SL+    K G   +   I   +  
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK 329

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 330 RGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAY 381


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 190/420 (45%), Gaps = 46/420 (10%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLF 137
           P+L+ L      K+   A+ I  +LR+          F+  +++ G C +   ++A  L 
Sbjct: 131 PLLKGL---CADKRTSDAMDI--VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 138 EVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++M  DG    P V  YT +++ + + G LD+A+ T ++M       P+V TY+ +I + 
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD-RGILPNVVTYNSIIAAL 244

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    D   ++L  M   G+  +  TYN+I+ GY  + + +E    F   + S G  PD
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE-AIGFLKKMHSDGVEPD 303

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++     +G   +  K ++     G+K +I T   L + Y   G   +M  ++D
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P    ++I+I  + K G +++    F KM+ +G+ P+++TY +++    K+G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 376 LIM-----------------------------------KVDSILRQVENSDVILDTPFFN 400
            +                                    K   ++ ++ +  + LDT FFN
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFN 483

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            II ++ + G V +  +LF  M      P+ IT++T+I  Y   G  + A  L   M+++
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSV 543



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 236
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++   ++  M++ G   P++ T NS+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 8/327 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+    K  + +QA L+F  M   GL P    Y  ++    +SG +++A      M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI S   F ++D  ++++ EM   GI    + +N+IID + K  +
Sbjct: 436 ID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   P+I T +++I  Y  +G +++  K       +G+K D  T N
Sbjct: 495 VIESEKLFDLMVRIG-VKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYN 553

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +    +    +   M+     P ++TYNI+++   +       +E +  +   
Sbjct: 554 TLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITES 613

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  
Sbjct: 614 GTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQ 439
           ++  +LF  +     VPD  T++ M +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE 697



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C+T+  ++       QP++A    + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KP++ TY  L++          +  +L  M   GI  +   ++ +I  Y K 
Sbjct: 329 SMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K ++    FS M +  G +PD  T  ++I     SG +E   +++ +     +      
Sbjct: 388 GKVDQAMLVFSKMRQQ-GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIV 446

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  S      +DK + ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KPN ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   +E
Sbjct: 507 RIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 154/372 (41%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A   FE M+ + L P  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+ +       D+A   I +M     C                            
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDL 504

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KP++ TYS LI       + D   K+LA M  +G++   VTYNT+I+GY K  +
Sbjct: 505 MVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 565 MEDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F  +  
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + GL+ ++D +   +E +    ++   N I+    Q GD+ +
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 743 AGTYLFMIDEKH 754


>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 426

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV     + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V   T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           QA  L + M + G KP V  Y  L++   + G LDEA   +N+M S   C+P+V T++I+
Sbjct: 100 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG-CQPNVITHNII 158

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           ++S     R+   EK+L++M   G   S VT+N +I+   +             M    G
Sbjct: 159 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM-PMHG 217

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+  + N ++  +     +++  ++ +     G   DI T N L  +  + G  D   
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ +  +   P ++TYN VI+   K G  E+  +   +M+ +G+KP+ ITY SLVS  
Sbjct: 278 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           S+ G + +       +E   +  +   +N I+    ++   ++  +    M  + C P  
Sbjct: 338 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 397

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
            T+  +I+     G+ + A +L N++ +
Sbjct: 398 ATYTILIEGIAYEGLAKEALDLLNELCS 425



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  + E+A  L + M   GLKP +  Y++LVS   + G +DEA    +D+
Sbjct: 294 TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL 353

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           + +   +P+  TY+ ++    K  + D     LA M     + +  TY  +I+G
Sbjct: 354 EGLG-IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 406



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEA--LDEAIKQKKWQLALKIFGLLRQQQ 108
           LSK+ +TE AIK +++     + K L P  +  +  +    ++ K   A+K F  L +  
Sbjct: 302 LSKVGKTERAIKLLDEM----RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL-EGL 356

Query: 109 WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
             +    T+  +M+ L K +Q ++A      M+S   KP+   YT L+      GL  EA
Sbjct: 357 GIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 416

Query: 169 FSTINDMKS 177
              +N++ S
Sbjct: 417 LDLLNELCS 425



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 2/143 (1%)

Query: 317 MQKRFFFP--TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + ++  FP  ++  ++  ++T  K   + +  +   +M+++G KP+ +TY  L++   K 
Sbjct: 71  INQQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 130

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +    L  + +     +    N I+ +    G      +L   M  + C P  +TF
Sbjct: 131 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 190

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
             +I      G+   A ++  KM
Sbjct: 191 NILINFLCRQGLLGRAIDILEKM 213


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 7/333 (2%)

Query: 125 GKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
           G CK+    E    + E+ L +G  P    +  LV+   ++G +  A   + DM      
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVM-DMMLREGF 332

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            PD+YTY+ LI    K    D   K+L +M       + VTYNTII    K  + EE  +
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEE--A 390

Query: 242 SFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           +  A+V +G G  PD+ T NS+I     S N     + Y E    G   D  T N+L  S
Sbjct: 391 TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDS 450

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G   +  +++  M+       V+TYN +I+ F K   I + EE F +M+ +G+  N
Sbjct: 451 LCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRN 510

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           S+TY +L+    K+  + +   ++ Q+    +  D   +N +++ + +AGD++K  ++  
Sbjct: 511 SVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQ 570

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           TM    C PD +T+ T+I      G  EAA  L
Sbjct: 571 TMASDGCEPDIVTYGTLIAGLCKAGRVEAATKL 603



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 174/385 (45%), Gaps = 35/385 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ + + AL+    +  ++ +     TF  L+  L K    + A  + ++ML +G  P +
Sbjct: 277 KEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDI 336

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +L+S   + G +DEA   +N M    DC P+  TY+ +I +  K ++ +   K+  
Sbjct: 337 YTYNSLISGLCKLGEVDEAVKVLNQMIE-RDCSPNTVTYNTIISTLCKENQVEEATKLAL 395

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKK-------FEEM--------ESSFSAMVES----- 249
            ++  GI     TYN++I G   ++        ++EM        E +++ +++S     
Sbjct: 396 VLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRG 455

Query: 250 --------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                          GC  ++ T N++I  +  +  I + E+ +++  L GV  +  T N
Sbjct: 456 KLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYN 515

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     ++   ++   +MD M      P   TYN ++  F KAG I+K  +  + M   
Sbjct: 516 TLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASD 575

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G +P+ +TY +L++   KAG +     +LR ++   + L    +N +I A  +    ++ 
Sbjct: 576 GCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEA 635

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             LF  M E+   PD +T+  + + 
Sbjct: 636 VRLFREMIEKAEAPDAVTYKIVFRG 660



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 173/420 (41%), Gaps = 42/420 (10%)

Query: 75  NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE-QA 133
           N  P  +L +L    +++     + +F    +Q  ++     F +++  LGK  + +   
Sbjct: 53  NFTPTQLLHSLR---REEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMK 109

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI--------------------- 172
            +L E+ +S  +  + D     + +Y   GL +E    +                     
Sbjct: 110 DILKEMKISLSVIDN-DSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLN 168

Query: 173 -----NDMKSVS---------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
                N +K V            +PDV T++ILIK+  + H+      ++ EM   G+  
Sbjct: 169 VLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLP 228

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              T+ TI+ G+ +    +        MVE+ GC     T+N +++ +   G IE+  ++
Sbjct: 229 DEKTFTTIMQGFIEEGNLDGAMRVKEQMVEA-GCVVTNVTVNVLVNGFCKEGRIEEALRF 287

Query: 279 YNEFNLM-GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
             E +L  G   D  T N+L     + G       VMD M +  F P + TYN +I    
Sbjct: 288 IEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLC 347

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G +++  +   +M  R   PN++TY +++S   K   + +   +   +    ++ D  
Sbjct: 348 KLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVC 407

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +N +I     + +     EL+  MK + C PD  T+  +I +    G  + A NL  +M
Sbjct: 408 TYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEM 467


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 172/369 (46%), Gaps = 7/369 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           K + A+++     Q++ Y       T  +++   CK+    QA  L + M + G KP V 
Sbjct: 174 KLKQAMEVLDRQLQKECYP---DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVV 230

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L++   + G LDEA   +N+M S   C+P+V T++I+++S     R+   EK+L++
Sbjct: 231 TYNVLINGICKEGRLDEAIKFLNNMPSYG-CQPNVITHNIILRSMCSTGRWMDAEKLLSD 289

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S VT+N +I+   +             M    GC P+  + N ++  +    
Sbjct: 290 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM-PMHGCTPNSLSYNPLLHGFCKEK 348

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++  ++ +     G   DI T N L  +  + G  D    +++ +  +   P ++TYN
Sbjct: 349 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYN 408

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VI+   K G  E+  +   +M+ +G+KP+ ITY SLVS  S+ G + +       +E  
Sbjct: 409 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 468

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  +   +N I+    ++   ++  +    M  + C P   T+  +I+     G+ + A
Sbjct: 469 GIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 528

Query: 451 QNLENKMIA 459
            +L N++ +
Sbjct: 529 LDLLNELCS 537



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 159/368 (43%), Gaps = 35/368 (9%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C +  +    +GK K+   A+ + E++   G  P V  Y  L+S Y +SG +D A   ++
Sbjct: 95  CTSLIRGFCRIGKTKK---ATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLD 151

Query: 174 DMKSVSD-------------------------------CKPDVYTYSILIKSCTKFHRFD 202
            M    D                               C PDV TY+ILI++  K     
Sbjct: 152 RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVG 211

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              K+L EM   G +   VTYN +I+G  K  + +E     + M  S GC P++ T N +
Sbjct: 212 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PSYGCQPNVITHNII 270

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + +  ++G     EK  ++    G    + T NIL     R G+  +   +++ M     
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 330

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  ++YN ++  F K   +++  EY   M  RG  P+ +TY +L++A  K G +     
Sbjct: 331 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 390

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           IL Q+ +         +N +I    + G  E+  +L   M+ +   PD IT+++++   +
Sbjct: 391 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 450

Query: 443 ALGMTEAA 450
             G  + A
Sbjct: 451 REGKVDEA 458



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 32/328 (9%)

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L++ F  +  M    D  PD+   + LI+   +  +      ++  +   G     
Sbjct: 69  RNGELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDV 127

Query: 221 VTYNTIIDGYGKAKKFEEM----------------ESSFSAMVESGG------------- 251
           +TYN +I GY K+ + +                   +    + +SG              
Sbjct: 128 ITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 187

Query: 252 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
             C+PD+ T   +I A      + +  K  +E    G K D+ T N+L     + G  D+
Sbjct: 188 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 247

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++ M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++
Sbjct: 248 AIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 307

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              + GL+ +   IL ++       ++  +N ++  + +   +++  E    M  R C P
Sbjct: 308 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 367

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T+ T++ A    G  + A  + N++
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAVEILNQL 395



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 238 EMESSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQT 293
           E+E  F    +MV  G   PDI    S+I  +   G  +K   W  E     G   D+ T
Sbjct: 72  ELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKK-ATWVMEILEQSGAVPDVIT 129

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N+L   Y ++G  D    V+D M      P VVTYN ++ T   +G +++  E   +  
Sbjct: 130 YNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +   P+ ITY  L+ A  K   + +   +L ++ N     D   +N +I+   + G ++
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +    M    C P+ IT   ++++  + G    A+ L + M+
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 291



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           + G +E   ++ + M +RG  P+ I   SL+  + + G   K   ++  +E S  + D  
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +N +IS Y ++G+++   ++   M   +  PD +T+ T+++     G  + A  + ++ 
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 185

Query: 458 I 458
           +
Sbjct: 186 L 186


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 165/361 (45%), Gaps = 2/361 (0%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++ G LR+ +  +     F+ L+    +   P+ A  L     + GL P  +  TAL+SA
Sbjct: 221 RLLGDLRESR-LEPDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISA 279

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
            G +G + EA +   +     + KP    Y+ L+K   K       E++L EMS  G+  
Sbjct: 280 LGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAP 339

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TY+ ++D Y +A ++E        M E+ G  P  +  + +++ + + G+ +K    
Sbjct: 340 DEATYSLLVDAYTRAGRWESARILLKEM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAV 398

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E +  GV+ D    N++  ++G+           + M++    P VVT+N +I+   K
Sbjct: 399 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRK 458

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  ++  E F++M+     P + TY  +++   +    + V+++L +++   ++ +   
Sbjct: 459 GGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIIT 518

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++  YG++G  ++  E    MK     P    +  ++ AY   G+ + A N+   M 
Sbjct: 519 YTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 578

Query: 459 A 459
           A
Sbjct: 579 A 579



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 166/366 (45%), Gaps = 42/366 (11%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG   +  +A  LF E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 269 RSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQV 328

Query: 172 INDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT------- 222
           +++M   SDC   PD  TYS+L+ + T+  R++    +L EM   G++ S+         
Sbjct: 329 LDEM---SDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAG 385

Query: 223 ----------------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
                                       YN +ID +GK         +F+ M E G   P
Sbjct: 386 FRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEG-IEP 444

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+ T N++I A+   G  ++  + + E           T NI+    G    +  + +++
Sbjct: 445 DVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETML 504

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M+++   P ++TY  +++ +G++G  ++  E  + MK  G+KP+   Y +LV+AY++ 
Sbjct: 505 SEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQR 564

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           GL     ++++ +    +   T   N +++A+G+   V +   +   MKE    PD IT+
Sbjct: 565 GLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITY 624

Query: 435 ATMIQA 440
            T+++A
Sbjct: 625 TTLMKA 630



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 162/339 (47%), Gaps = 10/339 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 343 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM 402

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            + S  +PD + Y+++I +  K+    H  D   ++  E    GIE   VT+NT+ID + 
Sbjct: 403 HA-SGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREE----GIEPDVVTWNTLIDAHR 457

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C P   T N MI+  G       +E   +E    G+  +I
Sbjct: 458 KGGRHDRAMELFEEMRESN-CPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNI 516

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G + +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 517 ITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 576

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G++ +++   SL++A+ +   +++  S+L+ ++ +D+  D   +  ++ A  +   
Sbjct: 577 MRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQ 636

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +K+  ++  M    C PD    A +  A   +  T+ A
Sbjct: 637 FDKVPVIYEEMITSGCAPDRKARAMLRSALRYMKYTKVA 675



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 43/319 (13%)

Query: 183 PDVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           PD+ +YS L+ S           ++E++L ++    +E  A  ++ +I  + +A    + 
Sbjct: 195 PDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFARAA-LPDA 253

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILT 298
                A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N L 
Sbjct: 254 ALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALL 313

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           K Y + G       V+D M      P   TY+++++ + +AG  E      K+M+  G+K
Sbjct: 314 KGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVK 373

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---------- 408
           P+S  +  +++ +   G   K  ++LR++  S V  D  F+N +I  +G+          
Sbjct: 374 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDA 433

Query: 409 -------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
                                     G  ++  ELF  M+E +C P   T+  MI   N 
Sbjct: 434 FNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMI---NL 490

Query: 444 LGMTEAAQNLENKMIAMKE 462
           LG  E    +E  +  MKE
Sbjct: 491 LGEQERWVGVETMLSEMKE 509


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 169/343 (49%), Gaps = 10/343 (2%)

Query: 121 MVMLGKCKQPEQASLLFEVM--LSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +V+ G CK     S  +EV+  + DG  + P +  Y+ +++ + + G +D A   + +M 
Sbjct: 14  VVVNGLCK-ARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMV 72

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +     PDV TY+ ++    +  + D   +++ EM   G+E    T++ +I G+  A+K 
Sbjct: 73  TRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKV 132

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E    +  ++ S  C  D  + +++I+       I +  + + E  +      K D+ T
Sbjct: 133 DEALKLYKEILTSS-CRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVT 191

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L   + ++G  +K   ++  M+ R   P VVTY+ ++    KAG +++  + F++M 
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G  PN +TY +L+     A  +     ++ ++  +    DT  +N ++  Y + G +E
Sbjct: 252 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIE 311

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLEN 455
           +  +LF  M  + C+PD IT+  +++ + NA  + EA   LEN
Sbjct: 312 EAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLEN 354



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 7/351 (1%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           +R+   ++    T+T L+    K    E+A  +  VM      P+V  Y++L+    ++G
Sbjct: 179 MREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 238

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
            LD+A      M S   C P+V TY+ LI      H+ D    ++ EM+        V+Y
Sbjct: 239 DLDQALDLFRRMTS-KGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSY 297

Query: 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY-NEF 282
           N ++DGY +  + EE +  F  M  +  C PD  T   ++  + N+  +E+      N  
Sbjct: 298 NALLDGYCRLGRIEEAKQLFKEMA-AKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 356

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G+  D+ T +I+   Y RA  + +    +  M  R   P  VTY+ +I+   KAG +
Sbjct: 357 TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 416

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
               E  K +     KP+ +TY  ++          +  ++L ++ N  V      FN +
Sbjct: 417 NHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSV 472

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           I A  + GD+++  +L + M      P  +T+ T+++ ++  G  E A  L
Sbjct: 473 IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 523



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 19/350 (5%)

Query: 122 VMLGKCKQPE---QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           V+ G CKQ E      +L E++  DG+ P V  YT++V    + G +D A   + +MK +
Sbjct: 51  VINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMK-L 109

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK--- 235
              +PD +T+S LI       + D   K+  E+        AV+ + +I G  + ++   
Sbjct: 110 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGE 169

Query: 236 ----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
               F+EME     M E G   PD+ T  ++I  +  SGN+EK  K            ++
Sbjct: 170 AYELFQEME-----MREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNV 224

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T + L     +AG  D+   +   M  +   P VVTY  +I     A  ++       +
Sbjct: 225 VTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDE 284

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M       ++++Y +L+  Y + G I +   + +++     + D   + C++  +  A  
Sbjct: 285 MTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASR 344

Query: 412 VEKMGELFLTMKERHCV-PDNITFATMIQAYN-ALGMTEAAQNLENKMIA 459
           +E+   L   MK    + PD +T++ ++  Y+ A    EAA+ ++ +MIA
Sbjct: 345 LEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ-EMIA 393



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 164/371 (44%), Gaps = 7/371 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ +   A +I   +  +        T+T ++  L +  + ++A  +   M   G++P  
Sbjct: 57  KQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDK 116

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             ++AL++ +  +  +DEA     ++ + S C+ D  + S LI    +  R     ++  
Sbjct: 117 FTFSALITGWCNARKVDEALKLYKEILT-SSCRLDAVSSSALITGLCRERRIGEAYELFQ 175

Query: 210 EMSYL---GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           EM        +   VTY  +IDG+ K+   E+       M E   C P++ T +S++   
Sbjct: 176 EMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM-EGRKCVPNVVTYSSLLHGL 234

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +G++++    +      G   ++ T   L      A   D  R +MD M         
Sbjct: 235 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADT 294

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN +++ + + G IE+ ++ FK+M  +   P+ ITY  LV  +  A  + +   +L  
Sbjct: 295 VSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLEN 354

Query: 387 VENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++ +  I  D   ++ +++ Y +A    +  E    M  R+  P+ +T++++I      G
Sbjct: 355 MKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 414

Query: 446 -MTEAAQNLEN 455
            +  A + L+N
Sbjct: 415 RVNHAMEVLKN 425



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 14/304 (4%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+  + E+A  LF+ M +    P    YT LV  +  +  L+EA   + +MK+ +   
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV TYSI++   ++  RF    + + EM    +  +AVTY+++IDG  KA +       
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              + +     PD+ T   +I     +   E+      E     V+  + T N +  +  
Sbjct: 423 LKNVDK-----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALC 477

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G  D+   ++  M      P +VTY  ++E F + G +E   E F+ M+ +  K +S 
Sbjct: 478 RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSA 537

Query: 363 -------TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
                   + +L+    KA  I K  +++ ++ + +          I+    +AG  E+ 
Sbjct: 538 ANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEA 597

Query: 416 GELF 419
           G+L 
Sbjct: 598 GKLI 601



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLI 377
           + F  P   TYN+V+    KA    K  E  K+M+  + + P+ +TY ++++ + K G +
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEM 61

Query: 378 MKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
            +   ILR++   D +  D   +  ++    + G +++  E+   MK +   PD  TF+ 
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 121

Query: 437 MIQAY-NALGMTEA 449
           +I  + NA  + EA
Sbjct: 122 LITGWCNARKVDEA 135


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 172/369 (46%), Gaps = 7/369 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           K + A+++     Q++ Y       T  +++   CK+    QA  L + M + G KP V 
Sbjct: 231 KLKQAMEVLDRQLQKECYP---DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVV 287

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L++   + G LDEA   +N+M S   C+P+V T++I+++S     R+   EK+L++
Sbjct: 288 TYNVLINGICKEGRLDEAIKFLNNMPSYG-CQPNVITHNIILRSMCSTGRWMDAEKLLSD 346

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S VT+N +I+   +             M    GC P+  + N ++  +    
Sbjct: 347 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM-PMHGCTPNSLSYNPLLHGFCKEK 405

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++  ++ +     G   DI T N L  +  + G  D    +++ +  +   P ++TYN
Sbjct: 406 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYN 465

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VI+   K G  E+  +   +M+ +G+KP+ ITY SLVS  S+ G + +       +E  
Sbjct: 466 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 525

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  +   +N I+    ++   ++  +    M  + C P   T+  +I+     G+ + A
Sbjct: 526 GIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 585

Query: 451 QNLENKMIA 459
            +L N++ +
Sbjct: 586 LDLLNELCS 594



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 159/368 (43%), Gaps = 35/368 (9%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C +  +    +GK K+   A+ + E++   G  P V  Y  L+S Y +SG +D A   ++
Sbjct: 152 CTSLIRGFCRIGKTKK---ATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLD 208

Query: 174 DMKSVSD-------------------------------CKPDVYTYSILIKSCTKFHRFD 202
            M    D                               C PDV TY+ILI++  K     
Sbjct: 209 RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVG 268

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              K+L EM   G +   VTYN +I+G  K  + +E     + M  S GC P++ T N +
Sbjct: 269 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PSYGCQPNVITHNII 327

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + +  ++G     EK  ++    G    + T NIL     R G+  +   +++ M     
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 387

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  ++YN ++  F K   +++  EY   M  RG  P+ +TY +L++A  K G +     
Sbjct: 388 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 447

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           IL Q+ +         +N +I    + G  E+  +L   M+ +   PD IT+++++   +
Sbjct: 448 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 507

Query: 443 ALGMTEAA 450
             G  + A
Sbjct: 508 REGKVDEA 515



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 32/328 (9%)

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L++ F  +  M    D  PD+   + LI+   +  +      ++  +   G     
Sbjct: 126 RNGELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDV 184

Query: 221 VTYNTIIDGYGKAKKFEEM----------------ESSFSAMVESGG------------- 251
           +TYN +I GY K+ + +                   +    + +SG              
Sbjct: 185 ITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 244

Query: 252 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
             C+PD+ T   +I A      + +  K  +E    G K D+ T N+L     + G  D+
Sbjct: 245 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 304

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++ M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++
Sbjct: 305 AIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 364

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              + GL+ +   IL ++       ++  +N ++  + +   +++  E    M  R C P
Sbjct: 365 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 424

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T+ T++ A    G  + A  + N++
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAVEILNQL 452



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 238 EMESSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQT 293
           E+E  F    +MV  G   PDI    S+I  +   G  +K   W  E     G   D+ T
Sbjct: 129 ELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKK-ATWVMEILEQSGAVPDVIT 186

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N+L   Y ++G  D    V+D M      P VVTYN ++ T   +G +++  E   +  
Sbjct: 187 YNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +   P+ ITY  L+ A  K   + +   +L ++ N     D   +N +I+   + G ++
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +    M    C P+ IT   ++++  + G    A+ L + M+
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 348



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           + G +E   ++ + M +RG  P+ I   SL+  + + G   K   ++  +E S  + D  
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +N +IS Y ++G+++   ++   M   +  PD +T+ T+++     G  + A  + ++ 
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 242

Query: 458 I 458
           +
Sbjct: 243 L 243


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 155/324 (47%), Gaps = 2/324 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T L+    + ++ ++A  LF  M  D   P+V  YT ++ A  Q G   EA +   +M
Sbjct: 276 SYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEM 335

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C+P+V+TY++LI S  +   FD  +KIL  M   G+  S VTYN +IDGY K K 
Sbjct: 336 TE-KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCK-KG 393

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                    +++ES  C P+  T N +I  +    NI K     ++     ++ ++ T N
Sbjct: 394 LSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYN 453

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     + G       ++  M +    P   TY++ I+T  K G +E+    F+ +K +
Sbjct: 454 ILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK 513

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+K N + Y +L+  Y K G +     +L ++ ++  + ++  +N +I  Y +  + ++ 
Sbjct: 514 GIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEA 573

Query: 416 GELFLTMKERHCVPDNITFATMIQ 439
             L   M +R   P   T+  +I 
Sbjct: 574 RLLVDIMIKRDIEPAADTYTILID 597



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 155/378 (41%), Gaps = 38/378 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  + ++   Q    T+T L+  L +    + A  +   ML  GL PSV  Y AL+
Sbjct: 328 ALNMFKEMTEKHC-QPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALI 386

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y + GL   A   ++ M+S ++C P+  TY+ LI    +         +L +M    +
Sbjct: 387 DGYCKKGLSASALEILSLMES-NNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKL 445

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + VTYN +I G  K           S M ESG   PD +T +  I      G +E+  
Sbjct: 446 QPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLV-PDEWTYSVFIDTLCKRGLVEEAR 504

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAG-------MYDKM------------------- 310
             +      G+KA+    + L   Y + G       + DKM                   
Sbjct: 505 SLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGY 564

Query: 311 ---------RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                    R ++D M KR   P   TY I+I+   K    ++  + F +M   G  P+ 
Sbjct: 565 CKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDV 624

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y + + AY   G +   + ++ ++    ++ DT  +   I AYG+ G ++    +   
Sbjct: 625 FIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKR 684

Query: 422 MKERHCVPDNITFATMIQ 439
           M E  C P   T++ +I+
Sbjct: 685 MHEVGCEPSYYTYSCLIK 702



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 156/394 (39%), Gaps = 40/394 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+I  L+          +T+ +L++   + K   +A  L   ML   L+P+V  Y  L+
Sbjct: 398 ALEILSLMESNNC-SPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G L  A+  ++ M   S   PD +TYS+ I +  K    +    +   +   GI
Sbjct: 457 HGQCKEGDLGSAYKLLSLMNE-SGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGI 515

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V Y+T+IDGY K  K  +       M+ S GC P+  T NS+I  Y    N ++  
Sbjct: 516 KANEVIYSTLIDGYCKVGKVSDGRFLLDKML-SAGCVPNSITYNSLIDGYCKEKNFKEAR 574

Query: 277 KWYNEFNLMGVKADIQ----TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
              +    + +K DI+    T  IL  +  +   +D+   + D M      P V  Y   
Sbjct: 575 LLVD----IMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I  +   G ++  E    KM  +G+ P+++ Y   + AY + G I     IL+++     
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGC 690

Query: 393 ILDTPFFNCIISAYGQAG-----------------------------DVEKMGELFLTMK 423
                 ++C+I     A                              D E   +LF  M 
Sbjct: 691 EPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMA 750

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E  C P+  T+   I     +G  E A  L + M
Sbjct: 751 EHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHM 784



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 147/345 (42%), Gaps = 4/345 (1%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G CK     +A L    ++  GL      YT+L+  Y ++  +D A +    
Sbjct: 205 FTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLS 264

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M +   C  +  +Y+ LI    +  R D   K+ ++M       +  TY  II    +  
Sbjct: 265 MPN-KGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLG 323

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E  + F  M E   C P++ T   +I +     N +  +K  N     G+   + T 
Sbjct: 324 RKTEALNMFKEMTEKH-CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTY 382

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y + G+      ++  M+     P   TYN +I  F +  +I K      KM  
Sbjct: 383 NALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLE 442

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           R ++PN +TY  L+    K G +     +L  +  S ++ D   ++  I    + G VE+
Sbjct: 443 RKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEE 502

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              LF ++KE+    + + ++T+I  Y  +G     + L +KM++
Sbjct: 503 ARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS 547



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 37/329 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++  +  L K    E+A  LFE +   G+K +  +Y+ L+  Y + G + +    ++ M
Sbjct: 486 TYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S + C P+  TY+ LI    K   F     ++  M    IE +A TY  +ID   K  +
Sbjct: 546 LS-AGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDE 604

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F++    F  M+ +G  HPD+F   + I AY + G ++  E    + N  G+  D     
Sbjct: 605 FDQAHDMFDQMLSTGS-HPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYT 663

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG--------------- 340
           +   +YGR G  D    ++  M +    P+  TY+ +I+    A                
Sbjct: 664 LFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSS 723

Query: 341 --------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR- 385
                           E   + F KM   G  PN+ TY   ++   K G +     +   
Sbjct: 724 GVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDH 783

Query: 386 -----QVENSDVILDTPFFNCIISAYGQA 409
                Q  N D+       +C +  YG+A
Sbjct: 784 MKEKGQSPNEDIYNSLLGCSCQLGLYGEA 812



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/416 (19%), Positives = 155/416 (37%), Gaps = 57/416 (13%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLM-----------------VMLGKCKQPEQASLLF 137
           Q AL  F  + Q+  ++   Q+   ++                 +M+      E A  + 
Sbjct: 91  QTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVL 150

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV------SDCKPDVYTYSIL 191
           E++ S   +     +   +  Y    +L   F  I++MKSV          P+++T + +
Sbjct: 151 EMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTM 210

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG- 250
           +    K       E  ++++   G+     TY ++I GY + K  +   + F +M   G 
Sbjct: 211 VNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGC 270

Query: 251 ---------------------------------GCHPDIFTLNSMISAYGNSGNIEKMEK 277
                                             C P + T   +I A    G   +   
Sbjct: 271 LRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALN 330

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            + E      + ++ T  +L  S      +D  + +++ M ++   P+VVTYN +I+ + 
Sbjct: 331 MFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYC 390

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G      E    M+     PN+ TY  L+  + +   I K  S+L ++    +  +  
Sbjct: 391 KKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVV 450

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +N +I    + GD+    +L   M E   VPD  T++  I      G+ E A++L
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSL 506



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 1/274 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y++L+   ++F   D ++ +  EM    +  +  T NT+++GY K     E E   S +V
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           ++G    D FT  S+I  Y  + N++     +      G   +  +   L   +  A   
Sbjct: 232 QAG-LSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRV 290

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D+   +   M +   +PTV TY ++I    + G   +    FK+M  +  +PN  TY  L
Sbjct: 291 DEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVL 350

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           + +  +         IL  +    +I     +N +I  Y + G      E+   M+  +C
Sbjct: 351 ICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNC 410

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            P+  T+  +I  +        A +L +KM+  K
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 136/358 (37%), Gaps = 32/358 (8%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K+K ++ A  +  ++ ++    A   T+T L+  L K  + +QA  +F+ MLS G
Sbjct: 561 IDGYCKEKNFKEARLLVDIMIKRDIEPAA-DTYTILIDNLLKDDEFDQAHDMFDQMLSTG 619

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V +YTA + AY   G L +A   I  M +     PD   Y++ I +  +F   D  
Sbjct: 620 SHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNA-KGIMPDTMLYTLFIDAYGRFGSIDGA 678

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAK-----------------------------K 235
             IL  M  +G E S  TY+ +I     AK                              
Sbjct: 679 FGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVD 738

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E     F  M E G C P+  T    I+     G +E   + ++     G   +    N
Sbjct: 739 YEFTLDLFGKMAEHG-CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYN 797

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     + G+Y +    +D M +    P + +  +++      G+ EK +  F      
Sbjct: 798 SLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQC 857

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
               + + +  L+    K GL  K   +   +E     +    ++ +I  +    +++
Sbjct: 858 EYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGFDGIQEID 915



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 79/170 (46%)

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           K  ++  N+L     R  M D+M+SV   M      P + T N ++  + K G++ + E 
Sbjct: 166 KLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAEL 225

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
           Y  K+   G+  ++ TY SL+  Y +   +   ++I   + N   + +   +  +I  + 
Sbjct: 226 YVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFC 285

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +A  V++  +LF  M E +C P   T+  +I A   LG    A N+  +M
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEM 335


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 176/376 (46%), Gaps = 18/376 (4%)

Query: 99  KIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F +L++  ++ +     T+TK++  L + K+ E++ LLF+ M   G+ P V  YT L+
Sbjct: 435 KAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILI 494

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            ++ ++GL+++A S  ++M+SV  C P+V TY+ L+ +  K  +      I   M     
Sbjct: 495 DSFCKAGLIEQARSWFDEMRSVG-CSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAAC 553

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-------------C--HPDIFTLNS 261
             +AVTY+ +IDG  KA + ++    +  ++ + G             C   P++ T  +
Sbjct: 554 YPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGA 613

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I     +  +    +  +     G + +    + L   + + G  D  + V   M K  
Sbjct: 614 LIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCG 673

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+V TY  +I+   K G ++   +   +M +    PN +TY +++   SK G I K  
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKAL 733

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++L  +E      +   +  +I   G+ G  +   +LF  M  + C P+ +T+  +I   
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHC 793

Query: 442 NALGMTEAAQNLENKM 457
            A G+ + A  L ++M
Sbjct: 794 CAAGLLDEAHLLLDEM 809



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 160/357 (44%), Gaps = 21/357 (5%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F++ +  +GK    E+A  + + M+  G  P    YT +++   Q+  ++++F    +MK
Sbjct: 423 FSRCLCGVGK---FEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMK 479

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             +   PDVYTY+ILI S  K    +       EM  +G   + VTY  ++  Y K+K+ 
Sbjct: 480 R-AGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQL 538

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY-----------NEFNLM 285
            +    F  MV++  C+P+  T +++I     +G I+K  + Y           ++F   
Sbjct: 539 IQAHDIFHRMVDA-ACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFE 597

Query: 286 G-----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           G     +  ++ T   L     +A        ++D M      P  + Y+ +I+ F K G
Sbjct: 598 GNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIG 657

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            I+  +E F +M   G  P+  TY SL+    K G +     +L ++ N     +   + 
Sbjct: 658 KIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYT 717

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I    + G++EK   L   M+E+ C P+ +T+  +I      G  +A+  L  +M
Sbjct: 718 AMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQM 774



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 146/321 (45%), Gaps = 16/321 (4%)

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           T ++S   ++ L +EA S ++ M+  S C P+V TY  L+    K  +F   ++I+  M 
Sbjct: 275 TQMISGLMEASLFNEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQFGWCKRIINMMM 333

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA------Y 266
             G   +   +N+++ GY  A  +      F+ M   G   P     N  I +       
Sbjct: 334 TEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGS-PPGYVAYNIFIGSICGQEEL 392

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDFMQKRFF 322
            N+  ++ +EK Y E  ++     +  +N  T ++ R     G ++K   ++  M ++ F
Sbjct: 393 PNAELLDLVEKVYEE--MLAASCVLNKVN--TANFSRCLCGVGKFEKAFQILKEMMRKGF 448

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P   TY  VI    +A  +EK    F++MK  G+ P+  TY  L+ ++ KAGLI +  S
Sbjct: 449 VPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARS 508

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++ +     +   +  ++ AY ++  + +  ++F  M +  C P+ +T++ +I    
Sbjct: 509 WFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLC 568

Query: 443 ALGMTEAAQNLENKMIAMKEN 463
             G  + A  +  K+I    N
Sbjct: 569 KAGEIQKACEVYEKLIGTSGN 589



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 3/150 (2%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           + LN+L +   R G++D+    +  ++   + P+ VTYN +++    AG +E      K+
Sbjct: 170 RLLNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKE 229

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G   +  T      A  K G   +    L  +E  D  LDT     +IS   +A  
Sbjct: 230 MSASGFCMDRSTIGYFAQALCKVG---RWADALNMLEKEDFNLDTVLCTQMISGLMEASL 286

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +       M+   C+P+ +T+ T++  +
Sbjct: 287 FNEAMSFLHRMRCNSCIPNVVTYRTLLSGF 316



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++L++ C +   +D   + L  +   G   SAVTYN ++     A + E        M  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT----KSYGRA 304
           SG C        S I  +  +  + K+ +W +  N++  K D     +L          A
Sbjct: 233 SGFCMD-----RSTIGYFAQA--LCKVGRWADALNMLE-KEDFNLDTVLCTQMISGLMEA 284

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
            ++++  S +  M+     P VVTY  ++  F K       +     M   G  PN   +
Sbjct: 285 SLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLF 344

Query: 365 CSLVSAYSKAG 375
            SLV  Y  AG
Sbjct: 345 NSLVHGYCNAG 355


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 164/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   PD  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVTPDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I     +   + AG I +   
Sbjct: 282 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 402 KLHEFDKANDVYMEM 416



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 153/366 (41%), Gaps = 40/366 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P    Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +++ G  P+  T +++IS +G  G +++    + +    GV  D      +  +Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +I I     AG IE+    F++    G   +  
Sbjct: 301 RAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 423 KERHCV 428
           +E  CV
Sbjct: 417 QEVGCV 422



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  DT  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 162/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      +  +F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 201/443 (45%), Gaps = 53/443 (11%)

Query: 60  AIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK 119
           A+ N+ KK    + + +   P+L+ L      K+   A+ I  +LR+          F+ 
Sbjct: 109 ALGNVVKK--GFRVEAITFTPLLKGL---CADKRTSDAMDI--VLRRMTELSCMPDVFSC 161

Query: 120 LMVMLGKCKQ--PEQASLLFEVMLSD---GLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            +++ G C +   ++A  L  +M  D   G  P V  YT +++ + + G  D+A+ST ++
Sbjct: 162 TILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHE 221

Query: 175 M--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           M  + +S   PDV TYS +I +  K    D   ++L  M   G+  + +TYN+I+ GY  
Sbjct: 222 MLDRRIS---PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCS 278

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           +++ +E    F   + S G  PD+ T NS++     +G   +  K ++     G++ DI 
Sbjct: 279 SEQPKE-AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIA 337

Query: 293 TLNILTKSYGRAGMYDKMRSVMDF-----------------------------------M 317
           T   L + Y   G   +M +++D                                    M
Sbjct: 338 TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKM 397

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++    P VVTY  VI    K+G ++    YF++M   G+ PN I Y SL+ +       
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P+ IT++T+
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 438 IQAYNALGMTEAAQNLENKMIAM 460
           I  Y   G  + A  L + M ++
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSV 540



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 159/353 (45%), Gaps = 11/353 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    K ++ ++A L+F  M   GL P+V  Y A++    +SG +D+A      
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P++  Y+ LI S   F ++D  E+++ EM   GI  + + +N+II  + K  
Sbjct: 432 MID-EGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEG 490

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E E  F  MV  G   P++ T +++I  Y  +G +++  K  +    +G+K D  T 
Sbjct: 491 RVIESEKLFDLMVRIG-VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y R    D   ++   M      P ++TYNI+++           +E +  +  
Sbjct: 550 NTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITK 609

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGD 411
            G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G 
Sbjct: 610 SGTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            ++  +LF+       VP+  T+  M +     G+ E    L+    +M++N 
Sbjct: 667 NDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFFSMEDNG 716



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ+K   A+ +F  +RQ         T+  ++ +L K    + A L FE M+ +GL P++
Sbjct: 383 KQEKVDEAMLVFSKMRQHGL-NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNI 441

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VYT+L+ +       D+A   I +M     C                            
Sbjct: 442 IVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDL 501

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KP+V TYS LI       + D   K+L+ M  +G++   VTYNT+I+GY +  +
Sbjct: 502 MVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSR 561

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F  MV SG   P+I T N ++    ++      ++ Y      G + ++ T N
Sbjct: 562 MDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G  ++ ++ F     
Sbjct: 621 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFVAFSS 679

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ PN  TY  +       GL+ ++D +   +E++   +D+   N I+    Q G++ +
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITR 739

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 740 AGTYLSMIDEKH 751



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T+  ++      +QP++A    + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      +PD+ TY  L++          +  +L  M   GI      +N +I  Y K 
Sbjct: 326 SMTK-RGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +K +E    FS M + G  +P++ T  ++I     SG+++    ++ +    G+  +I  
Sbjct: 385 EKVDEAMLVFSKMRQHG-LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIV 443

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L  S      +DK   ++  M  R      + +N +I +  K G + + E+ F  M 
Sbjct: 444 YTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMV 503

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KPN ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   ++
Sbjct: 504 RIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMD 563

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M      P+ IT+  ++Q       T AA+ L
Sbjct: 564 DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 179 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             C PDV++ +IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  S++  M++     PD+ T +S+I+A      ++K  +        GV  +  T N
Sbjct: 212 SDKAYSTYHEMLDR-RISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270

Query: 296 ILTKSYGRA-------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            +   Y  +       G   KMRS  D ++     P VVTYN +++   K G   +  + 
Sbjct: 271 SILHGYCSSEQPKEAIGFLKKMRS--DGVE-----PDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F  M  RG++P+  TYC+L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAK 383

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMI 438
              V++   +F  M++    P+ +T+  +I
Sbjct: 384 QEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 127/300 (42%), Gaps = 4/300 (1%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 203
           + P+V  Y  L+    ++G LD  F+ + ++      + +  T++ L+K  C      D 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVK-KGFRVEAITFTPLLKGLCADKRTSDA 141

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNS 261
           ++ +L  M+ L       +   ++ G     + +E       M +   GG  PD+ +  +
Sbjct: 142 MDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTT 201

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+ +   G+ +K    Y+E     +  D+ T + +  +  +    DK   V+  M K  
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +TYN ++  +  +   ++   + KKM+  G++P+ +TY SL+    K G   +  
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I   +    +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAY 381


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENRKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DIXVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRXEEA 339



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 162/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG   +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           camara]
          Length = 381

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 22  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTL 80

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 81  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 260 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  SEM-KTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 23  AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTLL 81

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 82  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 141 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 257

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 258 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 313

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+     ++ AY  L   + A ++ 
Sbjct: 314 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVY 373

Query: 455 NKM 457
            +M
Sbjct: 374 MEM 376



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 85  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 141

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ +I    K    +    
Sbjct: 142 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMIMIYGKTLEHEKANN 200

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 320

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + + +M+  G
Sbjct: 321 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVYMEMQEVG 380


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 151/341 (44%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            L P    Y+ L++ +G+ GL D+A S +  M+     + D+  YS LI+   K   +  
Sbjct: 4   ALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEH-DRVRGDLXLYSNLIELSRKLCDYSK 62

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------- 250
              I + +   GI    V YN++I+ +GKAK F E  S    M   G             
Sbjct: 63  AISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLT 122

Query: 251 ---------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                                 C  D+ T N MI  YG  G  ++ +K +     +GV+ 
Sbjct: 123 MYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + Y  A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+ RG++PN+ITY +++S + K G + +   +  ++ +S + +D   +  +I AY +A
Sbjct: 243 QEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI   T IQ     G  E A
Sbjct: 303 GLVSHAKRLLHELK----TPDNIPRDTAIQILAGSGRMEEA 339



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 163/368 (44%), Gaps = 33/368 (8%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P + VY ++++ +G++ L  EA S I +M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +     PD  +Y+ L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 TXG-VMPDTVSYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +E +  F +M    G  P++ + N+++  Y ++    +    +       ++ ++ T N 
Sbjct: 166 KEADKLFWSM-RKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNS 224

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G
Sbjct: 225 MMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSG 284

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSIL-------------------------------R 385
           ++ + + Y +++ AY +AGL+     +L                               R
Sbjct: 285 IEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIQILAGSGRMEEATWVFR 344

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           Q  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L 
Sbjct: 345 QAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLH 404

Query: 446 MTEAAQNL 453
             E A ++
Sbjct: 405 DFEKANDV 412



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M +  +      Y+ +I+   K   + +  S 
Sbjct: 7   PDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +    +      E    GV  D  +   L   Y 
Sbjct: 67  FSRLKRSG-ITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  YS A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKL 280



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 144/347 (41%), Gaps = 39/347 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  ++ + GK K   +A  L   M + G+ P    YT L++ Y ++    EA S   +M
Sbjct: 81  VYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEM 140

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +  C  D+ T +I+I    +       +K+   M  LG+E + V+YNT++  Y  A+ 
Sbjct: 141 REIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAEL 199

Query: 236 FEEMESSFSAM----------------------------------VESGGCHPDIFTLNS 261
           F E    F  M                                  ++S G  P+  T ++
Sbjct: 200 FGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYST 259

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS +G  G +++    + +    G++ D      +  +Y RAG+    + ++  ++   
Sbjct: 260 IISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKT-- 317

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +  +  I+    +G +E+    F++    G   +   +  ++  +SK      V 
Sbjct: 318 --PDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVV 375

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
            +  ++       D+     +++AYG+  D EK  +++L M++  CV
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNAYGKLHDFEKANDVYLEMQDEGCV 422



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 60/124 (48%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++R   P   TY+ +I  FGK G  +    + +KM+H  ++ +   Y +L+    K    
Sbjct: 1   RERALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDY 60

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K  SI  +++ S +  D   +N +I+ +G+A    +   L   M+    +PD +++ T+
Sbjct: 61  SKAISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTL 120

Query: 438 IQAY 441
           +  Y
Sbjct: 121 LTMY 124



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 6/176 (3%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  +    T++ ++ + GK  + ++A++LFE + S G++    +Y  ++ AY ++GL+
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLV 305

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   ++++K+     PD       I+      R +    +  +    G       +  
Sbjct: 306 SHAKRLLHELKT-----PDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQ 360

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +ID + K +K+  +   F  M    G  PD   +  +++AYG   + EK    Y E
Sbjct: 361 MIDLFSKYRKYSNVVEVFDKM-RGLGYFPDSNVIALVLNAYGKLHDFEKANDVYLE 415


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 3/348 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T L+ +  K      A  LFE M     +P V  YT L+   G++G +DEA+ 
Sbjct: 262 QPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
              +M+    C+PD    + +I    K  R D   K+  EM  L    S VTYNTII   
Sbjct: 322 FFYEMQR-EGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M ESG   P  FT + +I  +  +  +EK      E +  G   
Sbjct: 381 FESKSRASEVPSWFERMKESG-ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 499

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  P+   Y +L+S  ++ G++ +  S +R+++    I D   +N I++   + 
Sbjct: 500 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 559

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G   +  E+   MK+    PD +++ T++ A +  GM E A  L  +M
Sbjct: 560 GGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM 607



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ MLG  K   +A  +F  + +   +P+   Y +++      G   +     N+M 
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMS 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C PD  TYS LI +  K  R D   ++L EM   G++ +   Y  +I       D 
Sbjct: 222 TEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDV 281

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + 
Sbjct: 282 HGALSLFEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP 333

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    +   M      P+VVTYN +I+  F       ++  +
Sbjct: 334 DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE         +A MI+     G  + A N+ ++M
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 502



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 40/357 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R Q + +    T+T+L+  LGK  + ++A   F  M  +G +P   V   ++
Sbjct: 284 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMI 342

Query: 157 SAYGQSGLLDEAFSTINDMKSV-----------------------------------SDC 181
           +  G++G LD+A     +M ++                                   S  
Sbjct: 343 NFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI 402

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++    
Sbjct: 403 SPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 462

Query: 242 SFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L   
Sbjct: 463 LFQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 520

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             R GM D+  S M  MQ+    P + +YNI++    K G   +  E    MK   ++P+
Sbjct: 521 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 580

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            ++Y +++ A S AG+  +   ++ ++       D   ++ I+ A G+  D E  G+
Sbjct: 581 VVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKV-DHEYTGQ 636



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 36/255 (14%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS------------ 269
           TY  +I      +++ EM      MV +  C      L+ ++   GN+            
Sbjct: 125 TYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 270 -----------------------GNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAG 305
                                  G   K+ + YNE +  G    D  T + L  ++ + G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D    +++ M++    PT   Y ++I  F K   +      F++M+H+  +P+  TY 
Sbjct: 245 RRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYT 304

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+    KAG I +      +++      DT   N +I+  G+AG ++   +LF  M   
Sbjct: 305 ELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTL 364

Query: 426 HCVPDNITFATMIQA 440
            C+P  +T+ T+I+A
Sbjct: 365 RCIPSVVTYNTIIKA 379


>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           micrantha]
          Length = 406

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 34  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 92

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 93  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 151

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 152 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 211

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 212 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 271

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 272 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 311



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 38  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 96

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 97  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 155

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 156 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 212

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 213 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 272

Query: 373 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 413
           +AGL+     +L +++  D I  DT                 F   I A G+A D+   E
Sbjct: 273 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEAKDITVFE 331

Query: 414 KM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 332 RMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 388



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 15  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 74

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 75  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 133

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 134 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 193

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 194 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 253

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 254 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 287



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 6/171 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++ + GK  + ++A++LF+ + S G++    ++  ++ AY ++GL+  A   ++++
Sbjct: 228 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 287

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     +PD       I       R +    +  +    G       +  +I    K KK
Sbjct: 288 K-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAKDITVFERMIHLLSKYKK 342

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  +   F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 343 YSNVVEVFDKM-RGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 392


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 15/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L + K+ +    L   +  +G+KP   +  A+++A+  SG +DEA      M
Sbjct: 97  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKM 156

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-------GIECSAVTYNTIID 228
           K    CKP   TY+ LIK       F ++ +    M  L        ++ +  TYN +I 
Sbjct: 157 KEYG-CKPTTSTYNTLIKG------FGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQ 209

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            +   KK EE  +    MV SG   PD+ T N+M  AY  +G  EK E+   +     VK
Sbjct: 210 AWCTKKKLEEAWNVLHKMVASG-IQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVK 268

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            + +T  I+   Y + G   +    +  M++    P  V +N +I+ +  A     ++E 
Sbjct: 269 PNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEA 328

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              M+  G+KP+ +T+ ++++A+S AGL+   + I   +  + +  D   ++ +   Y +
Sbjct: 329 LTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVR 388

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           AG   K   L  +M +     + + F T+I  + A G  + A +L  KM  M
Sbjct: 389 AGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEM 440



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 171/360 (47%), Gaps = 4/360 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTAL 155
           A+KIF  +++    +    T+  L+   G   +P ++  L E+M  D  +KP+   Y  L
Sbjct: 149 AMKIFQKMKEYG-CKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNIL 207

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + A+     L+EA++ ++ M + S  +PDV TY+ + ++  +    +  E+++ +M Y  
Sbjct: 208 IQAWCTKKKLEEAWNVLHKMVA-SGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNK 266

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           ++ +  T   II GY K     E       M E G  HP+    NS+I  Y ++ +   +
Sbjct: 267 VKPNERTCGIIISGYCKEGNMTEALRFLYRMKELG-VHPNPVVFNSLIKGYLDATDTNGV 325

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           ++        G+K D+ T + +  ++  AG+ D    + + M K    P +  Y+I+ + 
Sbjct: 326 DEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKG 385

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           + +AG   K E     M   G++ N + + +++S +  AG + +  S+  ++       +
Sbjct: 386 YVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPN 445

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +  +I  YG+A    K  E+  TM+ER  VP+  T   +  A+ A+G+ + A  + N
Sbjct: 446 LKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 505



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 168/354 (47%), Gaps = 18/354 (5%)

Query: 114 CQTF---TKLM-VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           CQT    TKLM  ++GK K P +A  +F  +  +G KP++  YT LV+A  +     + F
Sbjct: 57  CQTVHARTKLMNALIGKGK-PHEAQAVFHNLTEEGHKPTLITYTTLVAALTR----QKRF 111

Query: 170 STINDMKS-VSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            +I  + S V+D   KPD    + +I + +   + D   KI  +M   G + +  TYNT+
Sbjct: 112 KSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTL 171

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM- 285
           I G+G   +  E       M +     P+  T N +I A+      +K+E+ +N  + M 
Sbjct: 172 IKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTK---KKLEEAWNVLHKMV 228

Query: 286 --GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G++ D+ T N + ++Y + G  +K   ++  MQ     P   T  I+I  + K G++ 
Sbjct: 229 ASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMT 288

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +   +  +MK  G+ PN + + SL+  Y  A     VD  L  +E   +  D   F+ I+
Sbjct: 289 EALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIM 348

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +A+  AG ++   E+F  M +    PD   ++ + + Y   G    A++L   M
Sbjct: 349 NAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSM 402



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 3/312 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  +F+ M   G KP+   Y  L+  +G  G   E+   +  M    + KP+  TY+I
Sbjct: 147 DEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNI 206

Query: 191 LIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
           LI++ CTK  + +    +L +M   GI+   VTYNT+   Y +  + E+ E     M + 
Sbjct: 207 LIQAWCTK-KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKM-QY 264

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
               P+  T   +IS Y   GN+ +  ++      +GV  +    N L K Y  A   + 
Sbjct: 265 NKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNG 324

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
           +   +  M++    P VVT++ ++  +  AG ++  EE F  M   G++P+   Y  L  
Sbjct: 325 VDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAK 384

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            Y +AG   K +S+L  +    V  +   F  IIS +  AG +++   L   M E    P
Sbjct: 385 GYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSP 444

Query: 430 DNITFATMIQAY 441
           +  T+ T+I  Y
Sbjct: 445 NLKTYETLIWGY 456



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++K+  ++ Q +  +   +T+  L+      K+ E+A  +   M++ G++P V  Y  + 
Sbjct: 184 SMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMA 243

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AY Q+G  ++A   I  M+  +  KP+  T  I+I    K        + L  M  LG+
Sbjct: 244 RAYAQNGETEKAERLILKMQ-YNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGV 302

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + V +N++I GY  A     ++ + + M E  G  PD+ T +++++A+ ++G ++  E
Sbjct: 303 HPNPVVFNSLIKGYLDATDTNGVDEALTLM-EEFGIKPDVVTFSTIMNAWSSAGLMDNCE 361

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK----------------- 319
           + +N+    G++ DI   +IL K Y RAG   K  S++  M K                 
Sbjct: 362 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGW 421

Query: 320 -------RFFF-----------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                  R F            P + TY  +I  +G+A    K EE    M+ RG+ P  
Sbjct: 422 CAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEM 481

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVE 388
            T   +  A+   GL  + + IL   E
Sbjct: 482 STMQLVADAWRAIGLFKEANRILNGSE 508


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 138/275 (50%), Gaps = 5/275 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    + +    A  +FE M   GL+P+V  Y +L++    +G LDEA   + D 
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDK 359

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP+V TY+ LI    K        ++L ++   G+  + +T+NT+ID YGKA +
Sbjct: 360 MSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGR 419

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++     S M+++G C P++ T N +I  +   GN+++  K   E    G+KAD+ T N
Sbjct: 420 MDDAFLLRSMMLDTGVC-PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYN 478

Query: 296 ILTKSYGRAGMYDKMRSVMD---FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           IL  +  + G   K   ++D    M+K+     +VTYN++I+ F   G +E+      +M
Sbjct: 479 ILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 538

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
             +G+ PN  TY  L     + G I  +D  L  V
Sbjct: 539 LEKGLIPNRTTYDILRDEMMEKGFIPDIDGHLYNV 573



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 2/284 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V T+ ++I    K  +F     ++ +M   G   S +TYNTIIDGY KA K  + ++  
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             MV +   HP+  T N +I  +    N+   +K + E    G++ ++ T N L      
Sbjct: 288 KEMV-AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G  D+   + D M      P VVTYN +I  F K   +++  E    +  RG+ PN IT
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVIT 406

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           + +L+ AY KAG +     +   + ++ V  +   +NC+I  + + G+V++  +L   M+
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467
                 D +T+  ++ A    G T  A  L ++M  M E  G++
Sbjct: 467 GNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLM-EKKGRR 509



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 156/325 (48%), Gaps = 11/325 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L K  + ++A  + E M + G  PSV  Y  ++  Y ++G + +A + + +M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     P+  T++ILI    +       +K+  EM   G++ + VTYN++I+G     K
Sbjct: 291 VA-KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGK 349

Query: 236 FEE---MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            +E   ++   S M    G  P++ T N++I+ +     +++  +  ++    G+  ++ 
Sbjct: 350 LDEALGLQDKMSGM----GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVI 405

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L  +YG+AG  D    +   M      P V TYN +I  F + G++++  +  K+M
Sbjct: 406 TFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ---VENSDVILDTPFFNCIISAYGQA 409
           +  G+K + +TY  LV A  K G   K   +L +   +E      +   +N +I  +   
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNK 525

Query: 410 GDVEKMGELFLTMKERHCVPDNITF 434
           G +E+   L   M E+  +P+  T+
Sbjct: 526 GKLEEANRLLNEMLEKGLIPNRTTY 550



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 15/327 (4%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMK---SVSDCKPDVYTYSI 190
             V+ S G   S+ +   LV AY ++G +D   E F    D     S   C P       
Sbjct: 148 LSVLGSWGCANSI-IVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNP------- 199

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++ S  K  R  ++E +  EM    I  + VT++ +I+G  K  KF++       M ++ 
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAW 258

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P + T N++I  Y  +G + K +    E     +  +  T NIL   + R       
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + V + MQ++   P VVTYN +I      G +++      KM   G+KPN +TY +L++ 
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + K  ++ +   +L  +    +  +   FN +I AYG+AG ++    L   M +    P+
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
             T+  +I  +   G  + A+ L  +M
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEM 465



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 5/264 (1%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTI---IDGYGKAKKFEEMESSFS-AMVESGGCHPDI 256
           F  I  +      L +  +A  YN I   +D + K   +       S +++ S GC   I
Sbjct: 101 FGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSI 160

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             ++ ++ AY  +G ++   + ++     G +    + N +  S  + G    + SV   
Sbjct: 161 I-VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKE 219

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M +R     VVT+++VI    K G  +K  +  + MK  G  P+ ITY +++  Y KAG 
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + K D++L+++    +  +   FN +I  + +  +V    ++F  M+ +   P+ +T+ +
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339

Query: 437 MIQAYNALGMTEAAQNLENKMIAM 460
           +I    + G  + A  L++KM  M
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGM 363



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTY-----------------NIVIETFGKAGHIEKMEEYF 349
           Y+K+R+++D   K   +     +                 ++++  + K G ++   E F
Sbjct: 123 YNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGF 182

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +    G + ++++   ++ +  K G I  V+S+ +++    + ++   F+ +I+   + 
Sbjct: 183 DRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKV 242

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           G  +K G++   MK     P  IT+ T+I  Y   G    A  L  +M+A +
Sbjct: 243 GKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKR 294


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 194/404 (48%), Gaps = 11/404 (2%)

Query: 59  FAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           F I + ++ ++S+   ++  +P    ++ + + +  + +L  F L+   + +     +F 
Sbjct: 22  FTISSTQRNLNSE---SVCGRPRDAVINASFQSQLLEQSLDSFKLM-VLKGHSPSSFSFN 77

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT--ALVSAYGQSGLLDEAFSTINDMK 176
             + +L K    ++    F   L    +   DVY+    + A+ ++G + + F  +  M+
Sbjct: 78  NALDLLAKSGNLDRTWGFFTEYLG---RTQFDVYSFGITIKAFCENGNVSKGFELLAQME 134

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           ++    P+V+ Y+ILI++C +    D  + + + M  LG+  +   Y  +I+G+ K K +
Sbjct: 135 TMG-VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFK-KGY 192

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++        ++  G  P+++T NS+I+ Y   G +    K ++E +  GV  +  T NI
Sbjct: 193 KKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNI 252

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L     R G   K   +++ M++    PT  T+N++++     G ++K   Y +K+K  G
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P  +TY  L+S +SK G    V  ++R++E+  +      +  +++ + ++ D+EK  
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           E+F  MK    VPD  T+  +I      G    A  L   M+ M
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEM 416



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 165/361 (45%), Gaps = 4/361 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALV 156
           K F LL Q +        F   +++   C+  +  QA ++F  M   GL  +  +YT ++
Sbjct: 125 KGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMI 184

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + + + G   + F     MK V    P++YTY+ LI    +  +  L  K+  E+S  G+
Sbjct: 185 NGFFKKGYKKDGFELYQKMKLVG-VLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGV 243

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
            C+AVTYN +I G  +  +  + E     M +    +P   T N ++    N+G ++K  
Sbjct: 244 ACNAVTYNILIGGLCRKGQVSKAEGLLERM-KRAHINPTTRTFNMLMDGLCNTGQLDKAL 302

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
            +  +  L+G+   + T NIL   + + G    +  ++  M+ R   P+ VTY I++ TF
Sbjct: 303 SYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTF 362

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            ++  IEK  E F  MK  G+ P+  TY  L+      G +++   + + +    +  + 
Sbjct: 363 VRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPND 422

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N +I+ Y +  +  K  +    M +    P+  ++ + IQ     G +  A+ L  +
Sbjct: 423 VIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKE 482

Query: 457 M 457
           M
Sbjct: 483 M 483



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 7/277 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLS 142
           + E  +  K  LA K+F  + ++      C   T  +++ G C+  Q  +A  L E M  
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKRG---VACNAVTYNILIGGLCRKGQVSKAEGLLERMKR 275

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P+   +  L+     +G LD+A S +  +K +  C P + TY+ILI   +K     
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC-PTLVTYNILISGFSKVGNSS 334

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           ++ +++ EM   GI  S VTY  +++ + ++   E+    F  M +  G  PD  T   +
Sbjct: 335 VVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM-KRIGLVPDQHTYGVL 393

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I      GN+ +  K Y     M ++ +    N +   Y +     K    ++ M K   
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            P V +Y   I+   K G   + +   K+M   G+KP
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 15/388 (3%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQA-------------RCQTFTKLMVMLGKCKQ 129
           + +++ +    ++  L I GLLR ++W  A                T+  L+  L K ++
Sbjct: 351 QMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQK 410

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
             +A  L++ M   G+KPS+  Y +L+  Y + G +DEA    ++M       P+  TY+
Sbjct: 411 LHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPD-KGFPPNEVTYT 469

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            L+K   K   FD    +L EM   G+ C   TYN +I+G     +  E++      + S
Sbjct: 470 TLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFL-S 528

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  P   T NS+I+ +  +G +      Y +    G+  +I T       Y R    D 
Sbjct: 529 EGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDL 588

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              ++ ++++    P +  YN  I+TF K G++ +   +   +   G+ P+   Y S V+
Sbjct: 589 AVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVT 648

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            Y    ++ +       +    V+ DT  +  +I  + + G+V    EL+  M   H +P
Sbjct: 649 GYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIP 708

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D+ TF  +       G  + A+ L + M
Sbjct: 709 DDKTFTALTHGLCRSGDIDGAKRLLDDM 736



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 152/378 (40%), Gaps = 46/378 (12%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF--------- 169
           M+M G C   E  +A  LF+ ++SDG+ P+   Y  L+      G+ DE +         
Sbjct: 296 MLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQ 355

Query: 170 -----------------------STINDMKSVSDCK-PDVYTYSILIKSCTKFHRFDLIE 205
                                    I  ++ V D   PDV+TY  LI    K  +     
Sbjct: 356 GLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAV 415

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +  +M   G++ S VTY++++ GY +  + +E    +S M + G   P+  T  +++  
Sbjct: 416 NLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKG-FPPNEVTYTTLMKG 474

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-MDFMQKRF--- 321
           Y      +      NE    GV     T NIL       G+Y   R   +D M KRF   
Sbjct: 475 YIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN-----GLYMVNRVCEVDEMLKRFLSE 529

Query: 322 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F PT +TYN +I  F KAG +      +++M+ +G+ PN +TY S +  Y +       
Sbjct: 530 GFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLA 589

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L  V    +  D   +N  I  + + G++ +     + + +    PD   + + +  
Sbjct: 590 VKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTG 649

Query: 441 YNALGMTEAAQNLENKMI 458
           Y  L M   A      MI
Sbjct: 650 YKNLKMMAEASKFYYSMI 667



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 7/316 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG--KCKQPEQASLLFEVMLSDGLK 146
           IK+K +  A   + LL + +     C  +T  +++ G     +  +   + +  LS+G  
Sbjct: 476 IKKKAFDNA---YALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFV 532

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+   Y ++++ + ++G++  AF     M+      P++ TY+  I    + +  DL  K
Sbjct: 533 PTTMTYNSIINGFVKAGMMGSAFGMYRQMRK-KGITPNIVTYTSFIDGYCRTNCCDLAVK 591

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L  +   GI+     YN  ID + K          F  ++   G  PD+   NS ++ Y
Sbjct: 592 LLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSR-ALHFLVLLLKDGLTPDVTVYNSFVTGY 650

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            N   + +  K+Y       V AD +    L   + + G       +   M      P  
Sbjct: 651 KNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDD 710

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T+  +     ++G I+  +     M+   + PN +TY  L++A  + G + +   +  +
Sbjct: 711 KTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDE 770

Query: 387 VENSDVILDTPFFNCI 402
           + +S V+ D   ++ +
Sbjct: 771 MLSSGVVPDDTTYDIL 786



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 143/340 (42%), Gaps = 2/340 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           T L+V   +      A  LF+ M   G      +Y  ++ A  + G+  +A    ++M  
Sbjct: 154 TDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAG 213

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            +  KPD   Y+I I    K    D   ++L +M   G E   +TY++++D   K  + +
Sbjct: 214 -AGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMD 272

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E       M+ + G   D+     ++  Y   G + K    ++E    GV     T  +L
Sbjct: 273 EALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVL 332

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K     GM D+   +   M ++    +   +N+VI+   +    +      + +   G+
Sbjct: 333 IKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGV 392

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P+  TY  L+    K   + +  ++  +++ + V      ++ ++  Y + G +++  +
Sbjct: 393 -PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALK 451

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           L+  M ++   P+ +T+ T+++ Y      + A  L N+M
Sbjct: 452 LYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEM 491



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 10/221 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           +S MV + G  PD  +   ++       +       ++E    G  AD +  +++ ++  
Sbjct: 138 YSRMV-TRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACV 196

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R GM+     + D M      P    Y I I    K    ++  +   KM+  G +P  +
Sbjct: 197 RGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWEL 256

Query: 363 TYCSLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           TY S+V    K G     L +K   +L   +  DV+L T     ++  Y   G+V K  +
Sbjct: 257 TYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLAT----MLMHGYCLHGEVGKALD 312

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           LF  +      P N+T+  +I+  +A GM++    L  +MI
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMI 353



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 4/237 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG+ RQ +         T    + G C+    + A  L   +  DG++P +  Y A +  
Sbjct: 555 FGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDT 614

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G +  A   +  +       PDV  Y+  +             K    M    +  
Sbjct: 615 FCKQGNMSRALHFLVLLLK-DGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVA 673

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
               Y T+IDG+ K          +S M+ +    PD  T  ++      SG+I+  ++ 
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMM-ANHVIPDDKTFTALTHGLCRSGDIDGAKRL 732

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            ++   + V  +I T N+L  +  R G   +   + D M      P   TY+I+  T
Sbjct: 733 LDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 11/351 (3%)

Query: 113 RCQ---TFTKLM-VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           RC+   + TKLM V++GK K P +A  +F  ++ +G KP++  YT LV+A  +  L    
Sbjct: 9   RCRIVRSRTKLMNVLIGKGK-PREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSI 67

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              I+ ++  +  KPD   ++ +I + ++        K+  +M   G + +  T+NT+I 
Sbjct: 68  LRLISKVEE-NGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIK 126

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--G 286
           GYG A K EE        ++ GG  P+  T N ++ A+ N  N+E  E W   + ++  G
Sbjct: 127 GYGNAGKTEEA-LKLLEFLQDGGVKPNQRTYNILVRAWCNKENME--EAWNMVYKMVASG 183

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ D  T N L ++Y   G   +   ++  M  R   P   T +I++  + K G++    
Sbjct: 184 MQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDAS 243

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
            +  +MK  G+ PN   + SL+  +        VD +L  +E + V  D   F+ I++A+
Sbjct: 244 RFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAW 303

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             AG ++K  E+F  M +    PD   F+ + + Y   G  E A+++   M
Sbjct: 304 SSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSM 354



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 152/310 (49%), Gaps = 2/310 (0%)

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V   T L++     G   EA S  N +      KP + TY+ L+ + T+   F  I +++
Sbjct: 13  VRSRTKLMNVLIGKGKPREAHSIFNSLMDEGH-KPTLITYTTLVAALTRQKLFKSILRLI 71

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           +++   G++  ++ +N+II+ + ++   +E    F  M ESG C P   T N++I  YGN
Sbjct: 72  SKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESG-CKPTTSTFNTLIKGYGN 130

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  E+  K        GVK + +T NIL +++      ++  +++  M      P  VT
Sbjct: 131 AGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVT 190

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +   + + G   + EE   +M +R + PN  T   +V+ Y K G ++     + +++
Sbjct: 191 YNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMK 250

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              V+ +   FN +I  +    D E + E+   M+E    PD +TF+T++ A+++ G  +
Sbjct: 251 ELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMD 310

Query: 449 AAQNLENKMI 458
             + + N M+
Sbjct: 311 KCKEIFNDMV 320



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 164/343 (47%), Gaps = 4/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L + K  +    L   +  +G+KP   ++ ++++A+ +SG + EA      M
Sbjct: 50  TYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKM 109

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S CKP   T++ LIK      + +   K+L  +   G++ +  TYN ++  +   + 
Sbjct: 110 KE-SGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKEN 168

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE  +    MV S G  PD  T N++  AY   G   + E+   E     V  + +T +
Sbjct: 169 MEEAWNMVYKMVAS-GMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCS 227

Query: 296 ILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+   Y + G M D  R V   M++    P +  +N +I+ F      E ++E    M+ 
Sbjct: 228 IIVNGYCKEGNMVDASRFVFR-MKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEE 286

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G++P+ +T+ ++++A+S AG + K   I   +  +++  D   F+ +   Y +AG+ EK
Sbjct: 287 NGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEK 346

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              +  +M++    P+ +   T+I  + + G  E A  +  KM
Sbjct: 347 AESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKM 389



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 172/366 (46%), Gaps = 6/366 (1%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
           ++ A  E+   K+   A+K+F  +++    +    TF  L+   G   + E+A  L E +
Sbjct: 89  IINAFSESGNMKE---AMKLFRKMKESG-CKPTTSTFNTLIKGYGNAGKTEEALKLLEFL 144

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G+KP+   Y  LV A+     ++EA++ +  M + S  +PD  TY+ L ++  +   
Sbjct: 145 QDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVA-SGMQPDAVTYNTLARAYAEKGE 203

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
               E+++ EM    +  +  T + I++GY K     +  S F   ++  G  P++F  N
Sbjct: 204 TIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDA-SRFVFRMKELGVLPNLFVFN 262

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+I  + ++ + E +++        GV+ D+ T + +  ++  AG  DK + + + M K 
Sbjct: 263 SLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKA 322

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +  ++I+ + + +AG  EK E     M+  G+ PN +   +++S +  AG +   
Sbjct: 323 EIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHA 382

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +  ++    V  +   +  +I  YG+A    K  EL   M+E+   P   T   +  A
Sbjct: 383 MKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADA 442

Query: 441 YNALGM 446
           + A+G+
Sbjct: 443 WRAIGL 448


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 165/347 (47%), Gaps = 2/347 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  Y+    TFT L+  L    +  +A  L + M+  G +P++  Y  +V+   + G +D
Sbjct: 108 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 167

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+ +N M++ +  + DV  ++ +I S  K+   D    +  EM   GI  + VTY+++
Sbjct: 168 LAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I       ++ +     S M+E    +P++ T N++I A+   G   + EK +++     
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKK-INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  DI T N L   +      DK + + +FM  +  FP + TYN +I+ F K+  +E   
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 345

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M HRG+  +++TY +L+      G       + +Q+ +  V  D   ++ ++   
Sbjct: 346 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              G +EK  E+F  M++     D   + TMI+     G  +   +L
Sbjct: 406 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 3/351 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +    AL +F  + + +  +    T++ L+  L    +   AS L   M+   
Sbjct: 192 IDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ LI       R D  
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSLINGFCMHDRLDKA 309

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +++   M          TYNT+I G+ K+K+ E+    F  M   G    D  T  ++I 
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG-LVGDTVTYTTLIQ 368

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
              + G+ +  +K + +    GV  DI T +IL       G  +K   V D+MQK     
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S      L+ +  ++L
Sbjct: 429 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 488

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           ++++    + D+  +N +I A+ + GD     EL   M+    V D  T  
Sbjct: 489 KKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG 539



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 159/370 (42%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+   A  L + M+  G +P  
Sbjct: 57  RRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 115

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +T L+          EA + ++ M     C+P++ TY +++    K    DL   +L 
Sbjct: 116 ITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN 174

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    IE   V +NTIID   K +  ++  + F  M E+ G  P++ T +S+IS   + 
Sbjct: 175 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSY 233

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +W +   L+                             D ++K+   P +VT+
Sbjct: 234 G------RWSDASQLLS----------------------------DMIEKKIN-PNLVTF 258

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+ F K G   + E+    M  R + P+  TY SL++ +     + K   +   + +
Sbjct: 259 NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 318

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            D   D   +N +I  + ++  VE   ELF  M  R  V D +T+ T+IQ     G  + 
Sbjct: 319 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 378

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 379 AQKVFKQMVS 388



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 36/294 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P ++ ++ L+ +  K  +FDL+  +  +M  LGI  +  TYN +I+ + +  +     + 
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M++  G  P I TL+S+++ Y +   I       ++   MG + D  T   L     
Sbjct: 68  LGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------KME--------- 346
                 +  +++D M +R   P +VTY +V+    K G I+       KME         
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 347 -------------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
                                FK+M+ +G++PN +TY SL+S     G       +L  +
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 246

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
               +  +   FN +I A+ + G   +  +L   M +R   PD  T+ ++I  +
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 35/245 (14%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P IF  N ++SA       + +     +   +G+  ++ T NIL   + R        ++
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 314 MDFMQKRFFFPTVVTYNIVIETF--GK-----AGHIEKMEE------------------- 347
           +  M K  + P++VT + ++  +  GK        +++M E                   
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 348 ---------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
                       +M  RG +PN +TY  +V+   K G I    ++L ++E + +  D   
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           FN II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 459 AMKEN 463
             K N
Sbjct: 248 EKKIN 252


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 164/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++MK
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   PD  +YS L+    +  +F     I AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVTPDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I     +   + AG I +   
Sbjct: 282 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 402 KLHEFDKANDVYMEM 416



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ + V  DT  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 184/398 (46%), Gaps = 37/398 (9%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +L  F        + A  + + +++ + GK +Q + A  + ++M S G++ +V  ++ALV
Sbjct: 161 SLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALV 220

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKF-------------HRF- 201
             Y ++GL  EA    N M+    C PD+  +SI+I S C K              HRF 
Sbjct: 221 RRYVRAGLAAEAVHAFNRMEDYG-CTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFE 279

Query: 202 -DLI------------------EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D++                  E++ ++M   GI+ +  TY+ +ID   +  +       
Sbjct: 280 PDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDV 339

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS M+++G C P+  T NS++  +  +G  EK+ K YN+   +G  AD  + N + +S+ 
Sbjct: 340 FSEMIDAG-CDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHC 398

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R    ++   +++ M K+   P   T+N +     K   +      + +MK    +PN++
Sbjct: 399 RDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTL 458

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L+  ++++     V  + ++++ S V  +   +  +IS +          +L + M
Sbjct: 459 TYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEM 518

Query: 423 KERHCVPDNIT-FATMIQAYNALGMTEAAQNLENKMIA 459
            E  C+  N++ + T+++     G  +  + L +KM+A
Sbjct: 519 VEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVA 556



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 3/242 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L +C Q  +A  +F  M+  G  P+   + +L+  + ++G  ++     N M
Sbjct: 319 TYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQM 378

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K +  C  D  +Y+ +I+S  +    +   KIL  M   G+  +A T+N I     K   
Sbjct: 379 KRLG-CPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHD 437

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                  ++ M E   C P+  T N ++  +  S + + + K   E +   V+ ++ T  
Sbjct: 438 VNGAHRMYARMKELN-CQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYR 496

Query: 296 ILTKSYGRAGMYDKM-RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           IL   +     ++   + +M+ ++++   P +  Y  V+E   KAG ++K EE   KM  
Sbjct: 497 ILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVA 556

Query: 355 RG 356
           RG
Sbjct: 557 RG 558


>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           cujabensis]
          Length = 359

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 22  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTL 80

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 81  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 260 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  SEM-KTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 156/346 (45%), Gaps = 11/346 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 23  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTLL 81

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 82  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 141 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 257

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 258 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 313

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D   F  +I    +      + E+F  M+     PD+   A ++ A
Sbjct: 314 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNA 359


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 177/378 (46%), Gaps = 8/378 (2%)

Query: 84  ALDEAIKQKK-WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVM 140
            LD  I+ K+    A  +F   ++    Q     FT  +++ G C     + A  LF+ M
Sbjct: 175 VLDATIRSKRNISFAENVF---KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM 231

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
            + G  P+V  Y  L+  Y +   +D+ F  +  M ++   +P++ +Y+++I    +  R
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGR 290

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              +  +L EM+  G     VTYNT+I GY K   F +     + M+  G   P + T  
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG-LTPSVITYT 349

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+I +   +GN+ +  ++ ++  + G+  + +T   L   + + G  ++   V+  M   
Sbjct: 350 SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P+VVTYN +I      G +E      + MK +G+ P+ ++Y +++S + ++  + + 
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             + R++    +  DT  ++ +I  + +    ++  +L+  M      PD  T+  +I A
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529

Query: 441 YNALGMTEAAQNLENKMI 458
           Y   G  E A  L N+M+
Sbjct: 530 YCMEGDLEKALQLHNEMV 547



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 192/447 (42%), Gaps = 63/447 (14%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           A+K L+ + R  + + ++    + +   NL  K           Q    L LK       
Sbjct: 25  ADKALTFLKRHPYQLHHLSANFTPEAASNLLLK----------SQNDQALILKFLNWANP 74

Query: 107 QQWYQARCQTFTKLMV---------------MLGKCKQPEQASLLFEVMLS--DGLKPSV 149
            Q++  RC+  T  ++               +  K    E ASL+F+ +    D    + 
Sbjct: 75  HQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTS 134

Query: 150 DVYTALVSAYGQSGLLDEAFS-----------------------TINDMKSVS------- 179
            V+  +V +Y +  L+D+A S                       TI   +++S       
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 180 -----DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                   P+V+TY+ILI+        D+   +  +M   G   + VTYNT+IDGY K +
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K ++      +M   G   P++ + N +I+     G ++++     E N  G   D  T 
Sbjct: 255 KIDDGFKLLRSMALKG-LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y + G + +   +   M +    P+V+TY  +I +  KAG++ +  E+  +M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ PN  TY +LV  +S+ G + +   +LR++ ++        +N +I+ +   G +E 
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
              +   MKE+   PD ++++T++  +
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGF 460



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 164/386 (42%), Gaps = 59/386 (15%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +++ GL   ++ Y      F++   M        +A  +   M  +G  PSV  Y AL++
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYM-------NEAYRVLREMNDNGFSPSVVTYNALIN 423

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            +  +G +++A + + DMK      PDV +YS ++    + +  D   ++  EM   GI+
Sbjct: 424 GHCVTGKMEDAIAVLEDMKE-KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
              +TY+++I G+ + ++ +E    +  M+  G   PD FT  ++I+AY   G++EK  +
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG-LPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 278 WYNEFNLMGVKADIQTLNILT--------------------------------------- 298
            +NE    GV  D+ T ++L                                        
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601

Query: 299 -----------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
                      K +   GM  +   V + M  +   P    YNI+I    +AG I K   
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYT 661

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            +K+M   G   +++T  +LV A  K G + +++S++  V  S  + +      ++    
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINH 721

Query: 408 QAGDVEKMGELFLTMKERHCVPDNIT 433
           + G+++ + ++   M +   +P+ I+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPNGIS 747


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 161/343 (46%), Gaps = 4/343 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A  +F+ M   GL P+   YTAL+  Y   G  ++ F+   +M+     +
Sbjct: 47  GCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR-GGVE 105

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P++YTY+ LI    +   F+    +  EM   GI  + V+YNT+I G  +  K  +  + 
Sbjct: 106 PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDA-AK 164

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M+ + G  P I T N ++  YG +G +     ++N+    G +    T N+L   + 
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFC 224

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RA    +    +  M++R   PT VTY I+I++F +  H+ K  E    M+  G++ ++ 
Sbjct: 225 RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH 284

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  LV A    G +     + + +    V      ++ +I  YG+ G   K  +L + M
Sbjct: 285 TYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEM 344

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           +++  +P++ ++   I+        + A+ L + M  ++  +G
Sbjct: 345 RQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIRSFAG 387



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 13/323 (4%)

Query: 139 VMLSDGLKPS-----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
            ML+ G K       V   TALV+   + G + EA    ++M  +    P+  TY+ L+ 
Sbjct: 23  AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG-LAPNEVTYTALMH 81

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
                 + +    +  EM   G+E +  TYN +I  + +  +FE   S F  M   G   
Sbjct: 82  GYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
            ++ + N++I+     G +    K  +     G +  I T N+L   YG+AG   KM + 
Sbjct: 142 -NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAG---KMSNA 197

Query: 314 MDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + F   M+   F P+ VTYN++I  F +A  + +       MK RG++P  +TY  L+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +++   + K   IL  +E + + +D   +  ++ A    G+++   +LF +M E+   P 
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS 317

Query: 431 NITFATMIQAYNALGMTEAAQNL 453
           N+ +  MI  Y   G +  A  L
Sbjct: 318 NVIYDMMIYGYGREGSSYKALKL 340



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+     L     + G   + R V D M      P  VTY  ++  +   G  EK    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+  G++PN  TY  L+  + + G   +  S+  ++    ++ +   +N +I+   + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           G +    +L   M+     P  ITF  ++  Y   G    A    N+M A
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA 206



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 4/196 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K W  A K+  ++R +   +    TF  L+   GK  +   A   F  M + G +PS   
Sbjct: 158 KLWDAA-KLLDMMRTE-GTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVT 215

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L++ + ++  +  A   ++DMK     +P   TY+ILI S  + +      +ILA M
Sbjct: 216 YNMLIAGFCRARDMTRANRALSDMKE-RGLEPTKVTYTILIDSFARENHMGKAFEILAGM 274

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+E  A TY  ++         ++    F +M E  G  P     + MI  YG  G+
Sbjct: 275 EKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEK-GVEPSNVIYDMMIYGYGREGS 333

Query: 272 IEKMEKWYNEFNLMGV 287
             K  K   E    G+
Sbjct: 334 SYKALKLIMEMRQKGL 349



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K  K   AL  F  ++    +Q    T+  L+    + +   +A+     M   GL+P+ 
Sbjct: 190 KAGKMSNALPFFNQMKAA-GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT L+ ++ +   + +AF  +  M+     + D +TY +L+++           K+  
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEKAG-LEVDAHTYGVLVRALCMEGNMKDARKLFQ 307

Query: 210 EMSYLGIECSAVTYNTIIDGYGK 232
            M   G+E S V Y+ +I GYG+
Sbjct: 308 SMGEKGVEPSNVIYDMMIYGYGR 330


>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           macrophylla]
          Length = 381

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 22  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 80

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 81  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 260 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 23  AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 81

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 82  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 141 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 257

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 258 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 313

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 314 DITVFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVY 373

Query: 455 NKM 457
            +M
Sbjct: 374 MEM 376


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 12/367 (3%)

Query: 95  QLALKIF---GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++A+K+F   G+     W           +  LGK K+  +  +  +   S    P V  
Sbjct: 243 EMAIKVFCEYGI----SWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS---TPDVVS 295

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ ++  Y   G L +A   ++DM+ +   KP+ YTY+ +I    K  +    EK+L EM
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQ-IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM 354

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               I    V Y T+I G+ K          F  M+ S    PD  T  ++I  +G  G 
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEML-SKKISPDYITYTTLIQGFGQGGK 413

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           + + +  ++E    G+K D  T   L   Y +AG      S+ + M +    P +VTY  
Sbjct: 414 VIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGA 473

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+   K G ++   E   +M+ +G++ N   Y S+V+   KAG I +   +++++E + 
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +  D   +  +I AY + GD++K  +L   M +R   P  +TF  ++  +  LGM E   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 452 NLENKMI 458
            L   M+
Sbjct: 594 RLLGWML 600



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 159/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+   G+  +  +   LF  M+S GLKP    YT L+  Y ++G +  AFS  N+M
Sbjct: 400 TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +    P++ TY  LI    K    D   ++L EM   G++ +   YN++++G  KA  
Sbjct: 460 VQMG-MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M E  G  PD  T  ++I AY   G+I+K  K   E    G++  + T N
Sbjct: 519 IEQAIKLMKEM-EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L   +   GM +    ++ +M ++   P  +TYN +++       +    + +K+M+++
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S TY  L+  + KA  + +   + +++     +     +N +I  + +   + + 
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEA 697

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  M+    V D   +   +      G  E   NL ++ I
Sbjct: 698 RELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAI 740



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 174/374 (46%), Gaps = 8/374 (2%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL Q  +  +     +   V+ G C   E  +A  L + M   GLKP+   Y +++    
Sbjct: 280 LLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLC 339

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           + G   EA   + +M S     PD   Y+ LI    K        K   EM    I    
Sbjct: 340 KIGKSFEAEKVLREMMS-QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDY 398

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           +TY T+I G+G+  K  E ++ F  M+ S G  PD  T  ++I  Y  +G +      +N
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMI-SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHN 457

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E   MG+  +I T   L     + G  D    ++D M+K+     V  YN ++    KAG
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           +IE+  +  K+M+  G+ P++ITY +++ AY + G I K   +L+++ +  +      FN
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY---NALG-MTEAAQNLENK 456
            +++ +   G +E    L   M E+  VPD IT+ T+++ +   N++   T+  + + N+
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 457 MIAMKENSGKKLIQ 470
            +A   N+   LI+
Sbjct: 638 GVAPDSNTYNILIK 651



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 150/326 (46%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +T L+    K      A+  F+ MLS  + P    YT L+  +GQ G + E  +  ++M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KPD  TY+ LI    K         +  EM  +G+  + VTY  +IDG  K  +
Sbjct: 425 IS-RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        M    G   ++   NSM++    +GNIE+  K   E  + G+  D  T  
Sbjct: 484 LDTANELLDEM-RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYT 542

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +Y R G  DK   ++  M  R   PTVVT+N+++  F   G +E  +     M  +
Sbjct: 543 TVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++ITY +L+  +     +     I +++ N  V  D+  +N +I  + +A ++++ 
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             L+  M E+  VP   ++  +I+ +
Sbjct: 663 WFLYKEMIEKGYVPTVTSYNALIKRF 688



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 25/259 (9%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           FD+  ++L E+ +L                 +A+K  +   S+  +V    C       N
Sbjct: 193 FDIFFQVLVEIGHLS----------------EARKLLDKLLSYGLVVTVDSC-------N 229

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           + +S   N  N E +E     F   G+  +  + NI+  S  R G   +   ++  M  R
Sbjct: 230 AFLSRIAN--NSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFR 287

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV+Y+ VI+ +   G ++K  +    M+ +G+KPN  TY S++    K G   + 
Sbjct: 288 SSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + +LR++ +  +I D   +  +I  + + G V    + F  M  +   PD IT+ T+IQ 
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 441 YNALGMTEAAQNLENKMIA 459
           +   G     QNL ++MI+
Sbjct: 408 FGQGGKVIEPQNLFHEMIS 426



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 41/280 (14%)

Query: 186 YTYSILIKSCTKF-----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           Y   + + SC  F     +  + IE  +      GI  +  +YN II    +  K +E  
Sbjct: 219 YGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAH 278

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                M +     PD+ + +++I  Y + G ++K  K  ++  + G+K +  T N +   
Sbjct: 279 RLLMQM-DFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILL 337

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G   +   V+  M  +   P  V Y  +I  F K GH+    ++F +M  + + P+
Sbjct: 338 LCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPD 397

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ITY +L                                   I  +GQ G V +   LF 
Sbjct: 398 YITYTTL-----------------------------------IQGFGQGGKVIEPQNLFH 422

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            M  R   PD +T+ T+I  Y   G    A +L N+M+ M
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQM 462


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 11/342 (3%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           ++M G CK  E  QA  L + M S+G++P+V ++T ++     +G + +A   ++  +  
Sbjct: 35  ILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQAL--LHFRRIG 92

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            DC P+VYTYSIL+ +  K  +      ++ EM   G   + VTYN +IDG+ K ++ +E
Sbjct: 93  EDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDE 152

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL- 297
           +      M +  GC  D+ T   ++  +  + +I++  +  N       K ++ T N L 
Sbjct: 153 VLMLLKEMSQR-GCRADVITYTMILDIFCKNNSIDEAYRLLNALE----KRNVVTYNSLF 207

Query: 298 -TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
              S        +  S+++ M +    P  V Y  V+    K   +++  +    M  +G
Sbjct: 208 TALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQG 267

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            K + ++Y  LV A++ AG       +L ++  S  ILDT   N +I  + +AGD+ +  
Sbjct: 268 CKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAH 327

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +LF +M +R  +P N+T+ T+I A+      + A  L ++MI
Sbjct: 328 QLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 51/388 (13%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKP 147
           K  ++Q AL+   LL + +    R        ++ G C   +  QA L F  +  D   P
Sbjct: 42  KAGEFQQALE---LLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGED-CAP 97

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           +V  Y+ LV A  +SG   EA+  + +M     C P+V TY+ LI    K  R D +  +
Sbjct: 98  NVYTYSILVDALCKSGQPHEAYGLVTEMVK-KGCSPNVVTYNALIDGFRKLERLDEVLML 156

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EMS  G     +TY  I+D + K    +E     +A+ +      ++ T NS+ +A  
Sbjct: 157 LKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKR-----NVVTYNSLFTALS 211

Query: 268 NSGN---------IEKM--------EKWYNEFNLM--------------------GVKAD 290
            +           +EKM        +  Y    LM                    G K D
Sbjct: 212 TAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTD 271

Query: 291 IQTLNILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
             +  IL  ++  AG  YD +  +   +   +   T  T N+VI  F KAG + +  + F
Sbjct: 272 DVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTK-TMNVVIHKFCKAGDLHEAHQLF 330

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M  RG  P+++TY +L+ A+ KA        +L Q+  +D   +   +N II ++ + 
Sbjct: 331 KSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCRE 390

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATM 437
              E+   +F  M +  C PD +++ T+
Sbjct: 391 QREEEARGIFQMMVDSGCFPDRVSYTTL 418



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 8/299 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSV 149
           +K +   ++  LL++      R    T  M++   CK    ++A  L   +    +    
Sbjct: 145 RKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYN 204

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            ++TAL +A G      EA S +  M      +P+   Y  ++    K  R D   ++L 
Sbjct: 205 SLFTALSTAEGDR--TTEALSLLEKMIQ-EGTRPNQVNYRTVLLMLCKNSRLDEAYQVLL 261

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G +   V+Y  ++  +  A +  +       M+ SG    D  T+N +I  +  +
Sbjct: 262 SMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYI-LDTKTMNVVIHKFCKA 320

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G++ +  + +      G      T N L  ++ +A   D    ++  M +  F P V+TY
Sbjct: 321 GDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITY 380

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL-VSAYSKAGLIMKV-DSILRQ 386
           N +I++F +    E+    F+ M   G  P+ ++Y +L +S    A    KV D+ LR+
Sbjct: 381 NSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKISKNDAAIYDQKVHDTCLRK 439



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+Y I+++ F KAG  ++  E   +MK  G++PN + + +++     AG + +     R+
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRR 90

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +   D   +   ++ ++ A  ++G   +   L   M ++ C P+ +T+  +I  +  L  
Sbjct: 91  I-GEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKL-- 147

Query: 447 TEAAQNLENKMIAMKENSGK 466
               + L+  ++ +KE S +
Sbjct: 148 ----ERLDEVLMLLKEMSQR 163


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 8/387 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ K+ +ALK+   +   + Y    +  T ++    +  + +QA  +FE M   GL PS+
Sbjct: 209 RESKYSIALKLLDKIPIDK-YSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSL 267

Query: 150 DVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  ++  YG+ G   D+    +++M++    + D +T S +I +C +    +  ++  
Sbjct: 268 VTYNVMLDVYGKMGRSWDKILDLLDEMRN-EGLQFDEFTCSTVISACGREGLINEAKEFF 326

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            E+   G E   VTYN ++  +GKA  + E  +    M E   C  D  T N +++AY  
Sbjct: 327 VELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEM-EDNNCTLDSVTYNELVAAYVR 385

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  E+     +     GV  +  T   +  +YGRAG   K   + + M+K    P V T
Sbjct: 386 AGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCT 445

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN ++   GK    E+M +    M+  G  PN IT+ +L++     G    V+ + R+++
Sbjct: 446 YNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMK 505

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           N         FN +ISAYG+ G      +++  M +    P   T+  ++ A    G  +
Sbjct: 506 NCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWK 565

Query: 449 AAQ----NLENKMIAMKENSGKKLIQC 471
           AA+    ++ NK     E S   ++ C
Sbjct: 566 AAESVLLDMRNKGFKPNETSFSLMLHC 592



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 174/410 (42%), Gaps = 44/410 (10%)

Query: 92  KKWQLALKIFGLLRQQ--QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W   L +   +R +  Q+ +  C T   ++   G+     +A   F  + S G +P  
Sbjct: 282 RSWDKILDLLDEMRNEGLQFDEFTCST---VISACGREGLINEAKEFFVELKSSGYEPGT 338

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y AL+  +G++G+  EA + + +M+  ++C  D  TY+ L+ +  +   ++    ++ 
Sbjct: 339 VTYNALLQVFGKAGIYSEALNILKEMED-NNCTLDSVTYNELVAAYVRAGFYEEGATVID 397

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------- 250
            M+  G+  +AVTY T+I+ YG+A K  +    F+ M +SG                   
Sbjct: 398 TMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKS 457

Query: 251 ---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                          GC P+  T N++++  G+ G  + +   + E    G +    T N
Sbjct: 458 RSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFN 517

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +YGR G       + D M K  F P   TYN ++    + G  +  E     M+++
Sbjct: 518 TLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNK 577

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G KPN  ++  ++  Y+K G +  ++ I + + +  +         +I A  +   V  M
Sbjct: 578 GFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGM 637

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
              F  + +    PD + F +M+  +    M E AQ    KM+ +   SG
Sbjct: 638 ERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQ----KMLDLIRESG 683



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 172/377 (45%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    E+ + + + M   G+ P+   YT +++AYG++G   +A    N M
Sbjct: 375 TYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQM 434

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S C P+V TY+ ++    K  R + + KIL++M   G   + +T+NT++   G   K
Sbjct: 435 KK-SGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGK 493

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +   F  M ++ G  P   T N++ISAYG  G+     K Y+E    G      T N
Sbjct: 494 HKFVNHVFREM-KNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYN 552

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-------------- 341
            L  +  R G +    SV+  M+ + F P   ++++++  + K G+              
Sbjct: 553 ALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDG 612

Query: 342 ---------------------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                +  ME  F+++   G KP+ + + S++S ++K  +  + 
Sbjct: 613 QIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERA 672

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L  +  S +  D   +N +++ Y + G+  K  E+   + +    PD +++ T+I+ 
Sbjct: 673 QKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKG 732

Query: 441 YNALGMTEAAQNLENKM 457
           +   G+ + A  + ++M
Sbjct: 733 FCRQGLMQEAIRVMSEM 749



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 8/345 (2%)

Query: 118 TKLMV-MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            +LM+ +LG+  +   A  L + +  D     V   T ++ AY ++G   +A +    MK
Sbjct: 200 VELMIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMK 259

Query: 177 SVSDC--KPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              DC   P + TY++++    K  R +D I  +L EM   G++    T +T+I   G+ 
Sbjct: 260 ---DCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGRE 316

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
               E +  F  + +S G  P   T N+++  +G +G   +      E        D  T
Sbjct: 317 GLINEAKEFFVEL-KSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVT 375

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  +Y RAG Y++  +V+D M ++   P  VTY  VI  +G+AG   K  + F +MK
Sbjct: 376 YNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMK 435

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PN  TY S+++   K     ++  IL  +  +    +   +N +++  G  G  +
Sbjct: 436 KSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHK 495

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +  +F  MK     P   TF T+I AY   G    A  + ++M+
Sbjct: 496 FVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMM 540



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 162/334 (48%), Gaps = 22/334 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA----LVSAYGQSGLLDEAFST 171
           +  K + +LGK    E+A LLFE ++S+ +   V + +     ++   G+      A   
Sbjct: 163 SLLKALDVLGK---SERAILLFEWVVSNSVSGDVKLDSKAVELMIRILGRESKYSIALKL 219

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTK-FHRFDLIEK------ILAEMSYLGIECSAVTYN 224
           ++        K  +  YS+ +++CT   H +    K      +   M   G+  S VTYN
Sbjct: 220 LD--------KIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYN 271

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            ++D YGK  +  +        + + G   D FT +++ISA G  G I + ++++ E   
Sbjct: 272 VMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKS 331

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G +    T N L + +G+AG+Y +  +++  M+        VTYN ++  + +AG  E+
Sbjct: 332 SGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEE 391

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                  M  +G+ PN++TY ++++AY +AG  +K   +  Q++ S  + +   +N I++
Sbjct: 392 GATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILA 451

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             G+    E+M ++   M+   C P+ IT+ T++
Sbjct: 452 LLGKKSRSEEMIKILSDMRINGCPPNRITWNTLL 485



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 162/395 (41%), Gaps = 70/395 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   G+  +  +A  LF  M   G  P+V  Y ++++  G+    +E    ++DM
Sbjct: 410 TYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDM 469

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--- 232
           + ++ C P+  T++ L+  C    +   +  +  EM   G E    T+NT+I  YG+   
Sbjct: 470 R-INGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGS 528

Query: 233 ----AKKFEEM-------------------------------------------ESSFSA 245
               AK ++EM                                           E+SFS 
Sbjct: 529 ELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSL 588

Query: 246 MVE-------------------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           M+                     G   P    L ++I A      +  ME+ + E    G
Sbjct: 589 MLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNG 648

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            K D+   N +   + +  MY++ + ++D +++    P +VTYN ++  + + G   K E
Sbjct: 649 YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAE 708

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E  K +   G  P+ ++Y +++  + + GL+ +   ++ ++    +      +N  +S Y
Sbjct: 709 EILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGY 768

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              G   ++ E+   M +++C P+ +T+  ++  Y
Sbjct: 769 AGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGY 803



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF  L+   G+C     A+ +++ M+  G  P    Y AL++A  + G    A S + D
Sbjct: 514 DTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLD 573

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++    KP+  ++S+++    K      +E+I  ++    I  S V   T+I    K +
Sbjct: 574 MRN-KGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCR 632

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               ME +F  ++++G   PD+   NSM+S +  +   E+ +K  +     G++ D+ T 
Sbjct: 633 AVRGMERAFEELMKNG-YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTY 691

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y R G   K   ++  + K    P +V+YN +I+ F + G +++      +M  
Sbjct: 692 NSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTT 751

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           RG+ P   TY + VS Y+  G+  +VD ++  +   +   +   +  I+  Y +A
Sbjct: 752 RGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKA 806


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 12/367 (3%)

Query: 95  QLALKIF---GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++A+K+F   G+     W           +  LGK K+  +  +  +   S    P V  
Sbjct: 243 EMAIKVFCEYGI----SWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS---TPDVVS 295

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ ++  Y   G L +A   ++DM+ +   KP+ YTY+ +I    K  +    EK+L EM
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQ-IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM 354

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               I    V Y T+I G+ K          F  M+ S    PD  T  ++I  +G  G 
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEML-SKKISPDYITYTTLIQGFGQGGK 413

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           + + +  ++E    G+K D  T   L   Y +AG      S+ + M +    P +VTY  
Sbjct: 414 VIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGA 473

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+   K G ++   E   +M+ +G++ N   Y S+V+   KAG I +   +++++E + 
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +  D   +  +I AY + GD++K  +L   M +R   P  +TF  ++  +  LGM E   
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 452 NLENKMI 458
            L   M+
Sbjct: 594 RLLGWML 600



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+   G+  +  +   LF  M+S GLKP    YT L+  Y ++G +  AFS  N+M
Sbjct: 400 TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +    P++ TY  LI    K    D   ++L EM   G++ +   YN++++G  KA  
Sbjct: 460 VQMG-MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M E  G  PD  T  ++I AY   G+I+K  K   E    G++  + T N
Sbjct: 519 IEQAIKLMKEM-EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L   +   GM +    ++ +M ++   P  +TYN +++       +    + +K+M+++
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S TY  L+  + KA  + +   + +++     +     +N +I  + +     + 
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEA 697

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  M+    V D   +   +      G  E   NL ++ I
Sbjct: 698 RELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAI 740



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 174/374 (46%), Gaps = 8/374 (2%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL Q  +  +     +   V+ G C   E  +A  L + M   GLKP+   Y +++    
Sbjct: 280 LLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLC 339

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           + G   EA   + +M S     PD   Y+ LI    K        K   EM    I    
Sbjct: 340 KIGKSFEAEKVLREMMS-QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDY 398

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           +TY T+I G+G+  K  E ++ F  M+ S G  PD  T  ++I  Y  +G +      +N
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMI-SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHN 457

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E   MG+  +I T   L     + G  D    ++D M+K+     V  YN ++    KAG
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           +IE+  +  K+M+  G+ P++ITY +++ AY + G I K   +L+++ +  +      FN
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY---NALG-MTEAAQNLENK 456
            +++ +   G +E    L   M E+  VPD IT+ T+++ +   N++   T+  + + N+
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 457 MIAMKENSGKKLIQ 470
            +A   N+   LI+
Sbjct: 638 GVAPDSNTYNILIK 651



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 150/326 (46%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +T L+    K      A+  F+ MLS  + P    YT L+  +GQ G + E  +  ++M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KPD  TY+ LI    K         +  EM  +G+  + VTY  +IDG  K  +
Sbjct: 425 IS-RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        M    G   ++   NSM++    +GNIE+  K   E  + G+  D  T  
Sbjct: 484 LDTANELLDEM-RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYT 542

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +Y R G  DK   ++  M  R   PTVVT+N+++  F   G +E  +     M  +
Sbjct: 543 TVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++ITY +L+  +     +     I +++ N  V  D+  +N +I  + +A ++++ 
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             L+  M E+  VP   ++  +I+ +
Sbjct: 663 WFLYKEMIEKGYVPTVTSYNALIKRF 688



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 25/259 (9%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           FD+  ++L E+ +L                 +A+K  +   S+  +V    C       N
Sbjct: 193 FDIFFQVLVEIGHLS----------------EARKLLDKLLSYGLVVTVDSC-------N 229

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           + +S   N  N E +E     F   G+  +  + NI+  S  R G   +   ++  M  R
Sbjct: 230 AFLSRIAN--NSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFR 287

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV+Y+ VI+ +   G ++K  +    M+ +G+KPN  TY S++    K G   + 
Sbjct: 288 SSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + +LR++ +  +I D   +  +I  + + G V    + F  M  +   PD IT+ T+IQ 
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 441 YNALGMTEAAQNLENKMIA 459
           +   G     QNL ++MI+
Sbjct: 408 FGQGGKVIEPQNLFHEMIS 426



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 41/280 (14%)

Query: 186 YTYSILIKSCTKF-----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           Y   + + SC  F     +  + IE  +      GI  +  +YN II    +  K +E  
Sbjct: 219 YGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAH 278

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                M +     PD+ + +++I  Y + G ++K  K  ++  + G+K +  T N +   
Sbjct: 279 RLLMQM-DFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILL 337

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G   +   V+  M  +   P  V Y  +I  F K GH+    ++F +M  + + P+
Sbjct: 338 LCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPD 397

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ITY +L                                   I  +GQ G V +   LF 
Sbjct: 398 YITYTTL-----------------------------------IQGFGQGGKVIEPQNLFH 422

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            M  R   PD +T+ T+I  Y   G    A +L N+M+ M
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQM 462


>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           brasiliensis]
          Length = 382

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 175/377 (46%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++MK
Sbjct: 8   YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 67

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 68  T-AGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 126

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 127 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 183 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
             G++ + I + +++ AY +AGL+     +L +++  D I  DT     I++  G+    
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAGAGRIEEA 300

Query: 409 ---------AGDVEKMG-------------------ELFLTMKERHCVPDNITFATMIQA 440
                    AG+V+ +                    E+F  M+     PD+   A ++ A
Sbjct: 301 TYVFRQAIDAGEVKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNA 360

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   + A ++  +M
Sbjct: 361 YGKLQEFDKANDVYMEM 377



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 142

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ +I    K    +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMIMIYGKTLEHEKANN 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + + +M+  G
Sbjct: 322 MIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 185/406 (45%), Gaps = 51/406 (12%)

Query: 68  VSSKKYKNL-WPKPVLEALDEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           +SS+K  N   PK +L       KQ KKW L ++I   LR Q W+      F  L+   G
Sbjct: 87  LSSEKINNQNIPKDLLVGTLIRFKQLKKWHLVVEILDWLRTQNWWDFGKMDFFMLITAYG 146

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K      A  +  +M  +G  P+V   TAL+ AYG+ G  + A +    M+     +P  
Sbjct: 147 KLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWG-PEPSA 205

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT-----YNTIIDGYGKAKKFEEME 240
           +TY I++K+  + +++   E++   +  L  E S +      +N +I  Y KA  +E+  
Sbjct: 206 FTYQIILKTFVQGNKYREAEELFDNL--LNDENSPLKPDQKMFNMMIYMYKKAGSYEKAR 263

Query: 241 SSFSAMVESG-------------------------------GCHPDIFTLNSMISAYGNS 269
            +F+ M E G                                  PD+ +   ++SAYG +
Sbjct: 264 KTFALMAERGIQQTTVTYNSLMSFETDYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKA 323

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
              E+    + E    GV+   +  NIL  ++  +GM ++ ++V   M++  +FP + +Y
Sbjct: 324 RREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSY 383

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMK--VDSIL 384
             ++  +  A  +E  E++FK++     +PN +TY +L+  Y+K     ++MK   + ++
Sbjct: 384 TTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLV 443

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           R ++ +  IL T     I+ AYG++GD +     F  M+     PD
Sbjct: 444 RGIKANQTILTT-----IMDAYGKSGDFDSAVHWFKEMESNGIPPD 484


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 163/383 (42%), Gaps = 40/383 (10%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T  +V+   CKQ +      LFE ML +G+ P    Y  L+  Y + G +DEA     +
Sbjct: 9   YTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEE 68

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M SV   +P +YTY+ L+ +  K  +     ++   M+  G E   VTY+TII G  K  
Sbjct: 69  MVSVG-LEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTG 127

Query: 235 KF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           K  E +E  F  M+E G C  +    N++I+      NIE+  K   E    G   D  T
Sbjct: 128 KVTEALEMLFHKMIERG-CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNIT 186

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG------------- 340
            N +     R G   + +   D M  R + P VV YN +++   K G             
Sbjct: 187 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVI 246

Query: 341 ----------------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                                 ++++ EE FKKM   G  PN  TY  ++S + +A  + 
Sbjct: 247 AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVD 306

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               +L ++     + D   +N ++    +   V+K  ELF TM +  C PD ++++ ++
Sbjct: 307 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 366

Query: 439 QAYNALGMTEAAQNLENKMIAMK 461
                      A+ L ++MI  K
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERK 389



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 153/381 (40%), Gaps = 37/381 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  + ++A  LF+ M   G +P V  Y+ ++S   ++G + EA   +   
Sbjct: 80  TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  +   Y+ LI    K    +   K+L EM+  G     +TYNTI+ G  +  K
Sbjct: 140 MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGK 199

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
             E +  F +M   G                                  G  PD  T NS
Sbjct: 200 VSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNS 259

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++       N+++ E+ + +    G   +  T +I+   + RA   D    V++ M K  
Sbjct: 260 ILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIG 319

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P VVTYNI+++   K   ++K  E F  M   G  P+ ++Y  +++   K   +    
Sbjct: 320 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR 379

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +  ++    ++ D   FN ++    +AG +++  +L   M    C PD + + T++   
Sbjct: 380 VLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439

Query: 442 NALGMTEAAQNLENKMIAMKE 462
              G    A  L     AMKE
Sbjct: 440 RKQGRHIQADRLTQ---AMKE 457



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 2/324 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++   A    +  L+  L K +  E+A  L E M S G  P    Y  ++S   + G + 
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVS 201

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA    + M S     PDV  Y+ L+ +  K  + D   K+  ++   G     VTYN+I
Sbjct: 202 EAKQFFDSMPS-RGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSI 260

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + G  +    +E E  F  MV SG C P+  T + ++S +  +  ++   K   E + +G
Sbjct: 261 LLGLARKSNMDEAEEMFKKMVASG-CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIG 319

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              D+ T NIL     +  + DK   +   M      P +V+Y++V+    K   +    
Sbjct: 320 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR 379

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F +M  R + P+ +T+  L+    KAG + +   +L Q+  S    D   +N +++  
Sbjct: 380 VLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439

Query: 407 GQAGDVEKMGELFLTMKERHCVPD 430
            + G   +   L   MKE+  + D
Sbjct: 440 RKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 43/284 (15%)

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +C P+ YT+ +++KS  K  +     K+  +M   GI    + YN +IDGY K  + +E 
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              +  MV S G  P I+T NS+++A+                                 
Sbjct: 63  NRLYEEMV-SVGLEPSIYTYNSLLNAFCKE------------------------------ 91

Query: 300 SYGRAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEYFKKMKHR 355
                    KM+  M+    M ++ F P VVTY+ +I    K G + E +E  F KM  R
Sbjct: 92  --------TKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIER 143

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G   N++ Y +L++   K   I +   +L ++ +   + D   +N I+S   + G V + 
Sbjct: 144 GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEA 203

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + F +M  R   PD + +  ++ A    G T+ A  L   +IA
Sbjct: 204 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIA 247


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 6/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK    + A    + M  D +   + +Y+ L+    +     +A S  + +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  Y + KK
Sbjct: 61  KR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKK 119

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N
Sbjct: 120 FLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 178

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ R
Sbjct: 179 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 238

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PNSITY +++S + K G + +   + +++ +S   +D   F  +I AY +AG V   
Sbjct: 239 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA 298

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 299 KRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 329



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 153/307 (49%), Gaps = 4/307 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAE 210
           Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   +     I + 
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYSKAISIFSR 59

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +   G     V YN +I+ +GKAK F E  S    M ++ G  P+  + +++++ Y  + 
Sbjct: 60  LKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEM-KAAGVMPNTTSYSTLLTMYVENK 118

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
              +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P VV+YN
Sbjct: 119 KFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 178

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K +++++++++ 
Sbjct: 179 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 238

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+   A
Sbjct: 239 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA 298

Query: 451 QNLENKM 457
           + L +++
Sbjct: 299 KRLLHEL 305



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 53  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLL 111

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 112 TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 170

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 171 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 229

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 230 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGXEIDQILFQTMIV 287

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 288 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 343

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 344 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 403

Query: 455 NKM 457
            +M
Sbjct: 404 MEM 406



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 126/271 (46%), Gaps = 1/271 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S FS +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
             SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y     
Sbjct: 61  KRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKK 119

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN ++Y +
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 179

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M+ R 
Sbjct: 180 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 239

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             P++IT++T+I  +  +G  + A  L  K+
Sbjct: 240 IEPNSITYSTIISIWGKVGKLDRAAMLFQKL 270


>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 426

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  + V+Y+T++  
Sbjct: 64  ISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + K+F E  S F+ M E   C  D+ T N MI  YG     ++ +K +     MG++ 
Sbjct: 124 YVENKRFREALSVFAEMREIK-CLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++  S + +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     P+NI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PNNIPRDTAIHILAGAGRIEEA 339



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 165/375 (44%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            V+   P+  +YS L+    +  RF     + AEM  +       T N +ID YG+    
Sbjct: 107 -VAGVMPNTVSYSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---T 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM  K  +Q   T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIVQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +PN+I   + +   + AG I +   
Sbjct: 282 VSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPNNIPRDTAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +IS + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   E A  +  +M
Sbjct: 402 KLHKFENANGVYMEM 416



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +    +     +E  + GV  +  + + L   Y 
Sbjct: 67  FSKLKRSG-ITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  D++ +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           + R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RDRALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F K+K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  L M + A  L
Sbjct: 121 LTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKL 171


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 157/342 (45%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  L   M    ++P+V +Y  +V    + GL+ EA    +D+
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV+TY+ LI       ++  + ++L +M    +  +  TYN +ID   K   
Sbjct: 245 VG-RGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGM 303

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +     + M+E G   PD+ T N+++S Y    ++ +  K ++ F   G+  D+ + N
Sbjct: 304 LGKAHDMRNLMIERGQ-RPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYN 362

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y +    D+  S+ + M  +   P +VTY+ +I+   K+G I    E F  +   
Sbjct: 363 ILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG 422

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN ITY  ++ A  K  L+ K   +   +    +  +   +N +I+ Y ++  +++ 
Sbjct: 423 GPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEA 482

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             LF  M  R+ VPD++T+  +I      G    A  L N M
Sbjct: 483 MNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVM 524



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 146/353 (41%), Gaps = 39/353 (11%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVD 150
           K  L  + F LL + +    R       M++ G CK     +A  L+  ++  G+ P V 
Sbjct: 195 KIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVF 254

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK------------- 197
            YT L+  +   G   E    + DM    +   +VYTY+ILI +  K             
Sbjct: 255 TYTCLIHGFCGLGQWREVTRLLCDMVD-RNVNLNVYTYNILIDALCKKGMLGKAHDMRNL 313

Query: 198 ----FHRFDLI------------------EKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 R DL+                   K+    +  GI     +YN +I GY K  +
Sbjct: 314 MIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNR 373

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  S F+ M       P+I T +S+I     SG I    + ++  +  G   ++ T N
Sbjct: 374 IDEALSLFNKM-NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYN 432

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +  +  + DK   + + M +R   P V +YNI+I  + K+  I++    F++M  R
Sbjct: 433 IMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRR 492

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + P+S+TY  L+    K+G I     +   + +    +D   +N +  A+ +
Sbjct: 493 NLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 156/414 (37%), Gaps = 78/414 (18%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI---- 172
           F  ++  + K K    A  L + M   G+ PS+   + L++ Y   G +  AFS +    
Sbjct: 81  FNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVL 140

Query: 173 ------------------------------NDMKSVSDCKPDVYTYSILIKSCTKF---- 198
                                         +D         D  TY  LI    K     
Sbjct: 141 KRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTR 200

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
             F+L+ K+  ++    +  + V YN I+DG  K     E    +S +V   G  PD+FT
Sbjct: 201 EAFELLHKMEGQV----VRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGR-GIDPDVFT 255

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK---MRSVM- 314
              +I  +   G   ++ +   +     V  ++ T NIL  +  + GM  K   MR++M 
Sbjct: 256 YTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMI 315

Query: 315 ----------------------DFMQKRFFF---------PTVVTYNIVIETFGKAGHIE 343
                                 D ++ R  F         P V +YNI+I  + K   I+
Sbjct: 316 ERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRID 375

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +    F KM ++ + PN +TY SL+    K+G I     +   + +     +   +N ++
Sbjct: 376 EALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIML 435

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            A  +   V+K  ELF  M ER   P+  ++  +I  Y      + A NL  +M
Sbjct: 436 DALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEM 489



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 5/261 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P V  +++++ S  K   +     +  +M   GI  S VT + +I+ Y        M  +
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCH---LGHMGFA 132

Query: 243 FS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           FS   MV   G   +  TL +++     +G + K  ++++     G   D  T   L   
Sbjct: 133 FSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLING 192

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G+  +   ++  M+ +   P VV YN++++   K G + +  + +  +  RG+ P+
Sbjct: 193 LCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPD 252

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             TY  L+  +   G   +V  +L  + + +V L+   +N +I A  + G + K  ++  
Sbjct: 253 VFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRN 312

Query: 421 TMKERHCVPDNITFATMIQAY 441
            M ER   PD +TF T++  Y
Sbjct: 313 LMIERGQRPDLVTFNTLMSGY 333



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 6/229 (2%)

Query: 116 TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           TF  LM   G C   +  +A  LF+     G+ P V  Y  L+  Y ++  +DEA S  N
Sbjct: 325 TFNTLMS--GYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFN 382

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M +     P++ TYS LI    K  R     ++ + +   G   + +TYN ++D   K 
Sbjct: 383 KM-NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKI 441

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +  ++    F+ M E G   P++ + N +I+ Y  S  I++    + E +   +  D  T
Sbjct: 442 QLVDKAIELFNLMFERG-LTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVT 500

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
            N L     ++G       + + M        V+TYNI+ + F K  H+
Sbjct: 501 YNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 1/240 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N I+    K K +     S S  +   G  P I TL+ +I+ Y + G++      
Sbjct: 77  SVVEFNMILGSIVKMKHYPT-AISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
                  G + +  TL  + K     G   K     D +  + F    VTY  +I    K
Sbjct: 136 LGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCK 195

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G   +  E   KM+ + ++PN + Y  +V    K GL+ +   +   V    +  D   
Sbjct: 196 IGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFT 255

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + C+I  +   G   ++  L   M +R+   +  T+  +I A    GM   A ++ N MI
Sbjct: 256 YTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMI 315



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%)

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P+VV +N+++ +  K  H        K+M  RG+ P+ +T   L++ Y   G +    S
Sbjct: 75  LPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFS 134

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L  V      L+      I+      G+V K  E   ++  +  + D +T+ T+I    
Sbjct: 135 VLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLC 194

Query: 443 ALGMTEAAQNLENKM 457
            +G+T  A  L +KM
Sbjct: 195 KIGLTREAFELLHKM 209


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 201/457 (43%), Gaps = 18/457 (3%)

Query: 4   SNSIFTPPTTATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKN 63
           S  +FT P     +P  + EP++ +  +  +P P        +    +++IL+      N
Sbjct: 55  SRWVFTTP-----IPPEWVEPLYDLSDLASNPQP--------QPSPWVNQILKLLDGSVN 101

Query: 64  IEKKVSSKKYK---NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120
           +E  + S   K    L P  V   L     + K  +A + F    +Q+ Y  + + +  L
Sbjct: 102 MESNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSL 161

Query: 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 180
           + +L      ++   +F      G   +V    +L+ ++G  G+++E       MK  S 
Sbjct: 162 IDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKE-SG 220

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
            +P +YT++ L+         +  E++   M    I    V+YNT+I GY KA   ++  
Sbjct: 221 IEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAM 280

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F+ M E     PD  T  ++I A  + GN +     Y E    G++      +++   
Sbjct: 281 EKFTDM-EKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGG 339

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G   +  SV + M K+     V  Y  +I+ +GK G++ +    F++MK  G +P+
Sbjct: 340 LCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPD 399

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY  +V+   K+G + +        ++++V ++  F++ +I   G+AG V++  + F 
Sbjct: 400 DVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFE 459

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M ER C  D+  +  +I A    G  E A  L  +M
Sbjct: 460 EMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRM 496



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 152/346 (43%), Gaps = 11/346 (3%)

Query: 101 FGLLRQQQWYQARCQ---------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
            G++ +  W   R +         TF  L+  L      E A  +FEVM    + P V  
Sbjct: 203 LGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVS 262

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  ++  Y ++G   +A     DM+   + +PD  TY  LI++C     FD    +  EM
Sbjct: 263 YNTMIKGYCKAGNTKKAMEKFTDMEK-RNLEPDKITYLTLIQACYSEGNFDSCLHLYQEM 321

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+E     Y+ +I G  K  +  E  S F  M + G C  ++    ++I AYG +GN
Sbjct: 322 EERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKG-CKANVAIYTALIDAYGKNGN 380

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           + +    +      G + D  T  ++     ++G  D+     +F +        + Y+ 
Sbjct: 381 VNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSS 440

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+  GKAG +++ E++F++M  RG   +S  Y +L+ A +K+G + +   + +++E   
Sbjct: 441 LIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEG 500

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                  +  +IS   +    E+  +L+  M ++   P   +F  +
Sbjct: 501 CDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRAL 546



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 42/343 (12%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +V+ G CK     + S +FE M   G K +V +YTAL+ AYG++G ++EA          
Sbjct: 335 LVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAI--------- 385

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
                                  +L E++  E    G E   VTY  I++G  K+ + +E
Sbjct: 386 -----------------------NLFERMKGE----GFEPDDVTYGVIVNGLCKSGRLDE 418

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               F    ++      +F  +S+I   G +G +++ EK++ E    G   D    N L 
Sbjct: 419 AVEYFEFCKDNEVAVNAMF-YSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALI 477

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            +  ++G  ++   +   M+K     TV TY I+I    K    E+  + +  M  +G+ 
Sbjct: 478 DALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGIT 537

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P + ++ +L      +G + +   IL ++    VI +T F + +I+   +AG  E+  +L
Sbjct: 538 PTTASFRALSVGLCLSGKVARACKILDELAPMGVIPETAFED-MINVLCKAGRTEQACKL 596

Query: 419 FLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              + +R   VP  +    +I A    G  + A  L +  I +
Sbjct: 597 ADGIVDRGREVPGRVR-TILINALRKAGNADLAMKLMHSKIGI 638


>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 426

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS + +SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKKSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++   F  + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKKSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           + R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C  D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +KS S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKS-SGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTL 63

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 123 IEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S   +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 1/251 (0%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I + +   G     V YNT+I  +GKAK F E  S  S M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEM-KTAGVTPNTTSYSTLLTMY 67

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGL 247

Query: 447 TEAAQNLENKM 457
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 158/350 (45%), Gaps = 11/350 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L+    Y      +  ++++ GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 6   AISIFSRLKSSG-YXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLL 64

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 65  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 124 EPNVVSYNTLVRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGXEIDQILFQTMIV 240

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 241 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKL 346



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 105/216 (48%)

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           S  + ++S G  PD+   N+MI  +G +    +     +E    GV  +  + + L   Y
Sbjct: 8   SIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMY 67

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN 
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ++Y +LV  Y  A L  +   + R ++  ++  +   +N +I  YG+  + EK   L   
Sbjct: 128 VSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   ++   + P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYST 62

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLVRVY 137


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 165/335 (49%), Gaps = 3/335 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  +  +A  +  VM +  + P   VYT L+S +G+SG +   +   ++M
Sbjct: 324 TYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEM 383

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      PD  TY+ +I    +  +     K+ +EM   G++   VTY  +IDGY KA +
Sbjct: 384 KR-KKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGE 442

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  S  + MVE G   P++ T  +++      G ++   +  +E +  G++ ++ T N
Sbjct: 443 MKEAFSLHNQMVEKG-LTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYN 501

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     + G  ++   +M+ M    FFP  +TY  +++ + K G + K  E  + M  +
Sbjct: 502 ALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDK 561

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P  +T+  L++ +  +G++   + +++ + +  ++ +   FN ++  Y    ++   
Sbjct: 562 GLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRAT 621

Query: 416 GELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 449
            E++  M  +  VPD  T+  +I+ +  A  M EA
Sbjct: 622 IEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEA 656



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 5/350 (1%)

Query: 109 WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           W          L+  LGK K  E  SLL + M   G  P V  Y+ +V  Y Q   L + 
Sbjct: 250 WNTVSYNIILHLLCQLGKVK--EAHSLLIQ-MEFRGNVPDVVSYSVIVDGYCQVEQLGKV 306

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              + +++     KP+ YTY+ +I    K  R    E++L  M    I    V Y T+I 
Sbjct: 307 LKLMEELQR-KGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLIS 365

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G+GK+         F  M +     PD  T  SMI     +G + +  K ++E    G+K
Sbjct: 366 GFGKSGNVSVEYKLFDEM-KRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLK 424

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T   L   Y +AG   +  S+ + M ++   P VVTY  +++   K G ++   E 
Sbjct: 425 PDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANEL 484

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M  +G++PN  TY +L++   K G I +   ++ +++ +    DT  +  I+ AY +
Sbjct: 485 LHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCK 544

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G++ K  EL   M ++   P  +TF  ++  +   GM E  + L   M+
Sbjct: 545 MGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWML 594



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 146/308 (47%), Gaps = 2/308 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L +  +  +A  LF  MLS GLKP    YTAL+  Y ++G + EAFS  N M
Sbjct: 394 TYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM 453

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P+V TY+ L+    K    D+  ++L EMS  G++ +  TYN +I+G  K   
Sbjct: 454 VE-KGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M +  G  PD  T  +++ AY   G + K  +        G++  I T N
Sbjct: 513 IEQAVKLMEEM-DLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFN 571

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L   +  +GM +    ++ +M  +   P   T+N +++ +    ++    E +K M  +
Sbjct: 572 VLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ 631

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++ TY  L+  + KA  + +   + +++      L    +N +I  + +    E+ 
Sbjct: 632 GVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEA 691

Query: 416 GELFLTMK 423
            +LF  M+
Sbjct: 692 RKLFEEMR 699



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 102/181 (56%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + E++ +GV  +  + NI+     + G   +  S++  M+ R   P VV+Y+++++ + +
Sbjct: 240 FREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQ 299

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              + K+ +  ++++ +G+KPN  TY S++S   K G +++ + +LR ++N  +  D   
Sbjct: 300 VEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVV 359

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +IS +G++G+V    +LF  MK +  VPD +T+ +MI      G    A+ L ++M+
Sbjct: 360 YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEML 419

Query: 459 A 459
           +
Sbjct: 420 S 420



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 36/171 (21%)

Query: 116 TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA----- 168
           T T   +M   CK  E  +A  L  +ML  GL+P++  +  L++ +  SG+L++      
Sbjct: 532 TITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIK 591

Query: 169 -------------FSTI-------NDMKSVSD---------CKPDVYTYSILIKSCTKFH 199
                        F+++       N+M++  +           PD  TY+ILIK   K  
Sbjct: 592 WMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKAR 651

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
                  +  EM   G   +A +YN++I G+ K KKFEE    F  M   G
Sbjct: 652 NMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 178/401 (44%), Gaps = 41/401 (10%)

Query: 68  VSSKKYKN-LWPKPVLEALDEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           ++S+K KN   PK ++       KQ KKW L  +I   LR Q W+      F  L+   G
Sbjct: 92  LNSEKMKNQTIPKALVVGTLMRFKQLKKWNLVAEILEWLRAQNWWDFGKMDFFMLITAYG 151

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K      A  +  +M  +G  P+V   TAL+ AYG+ G  + A +    M++    +P  
Sbjct: 152 KLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQTFG-PEPSA 210

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT-----YNTIIDGYGKAKKFEEME 240
           +TY I++K+  + ++F   E++  ++  L  E S +      +N +I  Y K+   E+  
Sbjct: 211 FTYQIILKTFVQGNKFKEAEEVFDKL--LNDEKSPLRPDQKMFNMMIYMYKKSGSHEKAR 268

Query: 241 SSFSAMVESG-------------------------------GCHPDIFTLNSMISAYGNS 269
            +F+ M E G                                  PD+ +   +I+AYG +
Sbjct: 269 QTFALMAERGIKKATVTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLINAYGKA 328

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
              E+    + E    GV+   +  NIL  ++  +GM ++ R V   M++  + P + +Y
Sbjct: 329 RREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYMPDLCSY 388

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             ++  +  A  +E  E++FK++   G +PN +TY +L+  Y+KA  I KV     ++  
Sbjct: 389 TTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLG 448

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             +  +      I+ A+G+ GD +     F  M     +PD
Sbjct: 449 RGIKANQTILTTIMDAHGKNGDFDSAVNWFKEMALNGLLPD 489


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 179/375 (47%), Gaps = 11/375 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTAL 155
           A+KIF  ++ +   +    TF  L+   G    PE+   L ++M   + +KP+   + +L
Sbjct: 160 AMKIFRKMKDRG-CKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSL 218

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + A+     + EA++ +  M + S  +PDV TY+ L ++  +       E ++ EM    
Sbjct: 219 IRAWCNKKRITEAWNVVYKM-AASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNR 277

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +  +  T   II+GY K  K ++    F   + + G HP++   NS+I  + +  + + +
Sbjct: 278 VMPNERTCGIIINGYCKEGKMKDA-LRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGV 336

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           ++        GVK D+ T + +  ++   G+ DK + + D M K    P +  ++I+ + 
Sbjct: 337 DEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKG 396

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           + +AG  EK E     M   G++PN + + +++S +  AG +     +  ++    +  +
Sbjct: 397 YVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPN 456

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              F  +I  YG+A + +K  EL   M+++   P   T   +  A++ALG+   A+ ++N
Sbjct: 457 LKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKN 516

Query: 456 K-------MIAMKEN 463
                   MI+ KE+
Sbjct: 517 DVEEAPKVMISTKED 531



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 164/349 (46%), Gaps = 8/349 (2%)

Query: 114 CQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           C+T    TKLM +L +  +P++A L+F  +  +G +P++  YT L++A  +        S
Sbjct: 68  CRTVRSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPS 127

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I+ ++  +  KPD   ++ +I + ++        KI  +M   G + +  T+NT+I GY
Sbjct: 128 LISKLEK-NGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGY 186

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVK 288
           G A   EE       M +     P+  T NS+I A+ N   I   E W   + +   G++
Sbjct: 187 GNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRI--TEAWNVVYKMAASGLQ 244

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ T N L ++Y + G   +   ++  MQ     P   T  I+I  + K G ++    +
Sbjct: 245 PDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRF 304

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M++ G+ PN + + SL+  +        VD  L  +E   V  D   F+ I++A+  
Sbjct: 305 LYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSS 364

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            G ++K  E+F  M +    PD   F+ + + Y   G  E A++L   M
Sbjct: 365 VGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAM 413



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 175/376 (46%), Gaps = 10/376 (2%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           I++ K Q A  IF  L  ++ ++    T+T L+  L + K+ +    L   +  +GLKP 
Sbjct: 82  IEKGKPQEAQLIFNSL-TEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPD 140

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              + A+++A+ +SG + EA      MK    CKP   T++ LIK        +   K+L
Sbjct: 141 SVFFNAMINAFSESGNVKEAMKIFRKMKD-RGCKPTTSTFNTLIKGYGNAGMPEECLKLL 199

Query: 209 AEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             MS    ++ +  T+N++I  +   K+  E  +    M  S G  PD+ T N++  AY 
Sbjct: 200 DLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAAS-GLQPDVVTYNTLARAYA 258

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFFP 324
            +G   + E    E     V  + +T  I+   Y + G   KM+  + F   M+     P
Sbjct: 259 QNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEG---KMKDALRFLYRMRNYGVHP 315

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +V +N +I+ F      + ++E    M+  G+KP+ +T+ ++++A+S  GL+ K   I 
Sbjct: 316 NLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIF 375

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             +  + +  D   F+ +   Y +AG+ EK   L   M +    P+ + F T+I  + + 
Sbjct: 376 DDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSA 435

Query: 445 GMTEAAQNLENKMIAM 460
           G  E A  +  KM  M
Sbjct: 436 GKMEYASRVYEKMCEM 451



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 5/134 (3%)

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           NI+IE     G  ++ +  F  +   G +P  ITY +L++A ++      + S++ ++E 
Sbjct: 79  NILIE----KGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           + +  D+ FFN +I+A+ ++G+V++  ++F  MK+R C P   TF T+I+ Y   GM E 
Sbjct: 135 NGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEE 194

Query: 450 AQNLENKMIAMKEN 463
              L + +++ +EN
Sbjct: 195 CLKLLD-LMSQEEN 207



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 94/175 (53%), Gaps = 7/175 (4%)

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V++  + +NIL +     G   + + + + + +    PT++TY  ++    +    + + 
Sbjct: 71  VRSRTKLMNILIEK----GKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIP 126

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
               K++  G+KP+S+ + ++++A+S++G + +   I R++++      T  FN +I  Y
Sbjct: 127 SLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGY 186

Query: 407 GQAGDVEKMGELF-LTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMIA 459
           G AG  E+  +L  L  +E +  P++ TF ++I+A+ N   +TE A N+  KM A
Sbjct: 187 GNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITE-AWNVVYKMAA 240


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 163/361 (45%), Gaps = 2/361 (0%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++ G LR+ +  +     F+ L+    +   P+ A  L     + GL P  +  TAL+SA
Sbjct: 214 RLLGDLRESR-LEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
            G +G + EA +   +     + KP    Y+ L+K   +       E++L EMS  G+  
Sbjct: 273 LGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAP 332

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TY+ ++D Y +A ++E        M E+ G  P  +  + +++ + + G+ +K    
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    GV+ D    N++  ++G+           D M++    P VVT+N +I+   K
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCK 451

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  ++  E F++M+     P + TY  +++   +      V+++L +++   ++ +   
Sbjct: 452 GGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIIT 511

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++  YG++G  ++  +    MK     P    +  ++ AY   G+ + A N+   M 
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571

Query: 459 A 459
           A
Sbjct: 572 A 572



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 173/363 (47%), Gaps = 36/363 (9%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG   +  +A  LF E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 262 RSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQV 321

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY- 230
           +++M S     PD  TYS+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+ 
Sbjct: 322 LDEM-SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 380

Query: 231 --GKAKK----FEEMESS--------FSAMVESGG-------------------CHPDIF 257
             G  +K      EM++S        ++ M+++ G                     PD+ 
Sbjct: 381 DRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVV 440

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N++I A+   G  ++  + + E           T NI+    G    ++ + +++  M
Sbjct: 441 TWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEM 500

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL 
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               ++++ ++   + +     N +I+A+G+   V +   +   MKE    PD IT+ T+
Sbjct: 561 DHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTL 620

Query: 438 IQA 440
           ++A
Sbjct: 621 MKA 623



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 158/329 (48%), Gaps = 10/329 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 336 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM 395

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           ++ S  +PD + Y+++I +  K+    H  D  +++  E     IE   VT+NT+ID + 
Sbjct: 396 QA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE----EIEPDVVTWNTLIDAHC 450

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C P   T N MI+  G     E +E   +E    G+  +I
Sbjct: 451 KGGRHDRAMELFEEMRESN-CPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNI 509

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G Y +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G++ + +   SL++A+ +   +++  S+L+ ++ + +  D   +  ++ A  +   
Sbjct: 570 MKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 629

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQA 440
            +K+  ++  M    C PD    A +  A
Sbjct: 630 FDKVPVIYEEMITSGCAPDRKARAMLRSA 658



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 43/323 (13%)

Query: 180 DCKPDVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 295
            +      A  ++ G  P    + ++ISA G++G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K Y R G       V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 408
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 409 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMI-- 481

Query: 441 YNALGMTEAAQNLENKMIAMKEN 463
            N LG  E  + +E  +  MKE 
Sbjct: 482 -NLLGEQERWEGVEAMLSEMKEQ 503



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 132/279 (47%), Gaps = 7/279 (2%)

Query: 94  WQLALKIFGLLRQQQWYQARC-QTFTKLMV-MLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           WQ   K F +LR+ Q    R  + F  +M+   GK      A   F+ M  + ++P V  
Sbjct: 385 WQ---KAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVT 441

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  L+ A+ + G  D A     +M+  S+C P   TY+I+I    +  R++ +E +L+EM
Sbjct: 442 WNTLIDAHCKGGRHDRAMELFEEMRE-SNCPPGTTTYNIMINLLGEQERWEGVEAMLSEM 500

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+  + +TY T++D YG++ +++E      AM ++ G  P     +++++AY   G 
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM-KADGLKPSPTMYHALVNAYAQRGL 559

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +            G++  I  LN L  ++G      +  SV+ FM++    P V+TY  
Sbjct: 560 ADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTT 619

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           +++   +    +K+   +++M   G  P+      L SA
Sbjct: 620 LMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSA 658


>gi|242053311|ref|XP_002455801.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
 gi|241927776|gb|EES00921.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
          Length = 642

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 168/351 (47%), Gaps = 5/351 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++W    K+F  +++++   A   +++     LG  + P +A  ++  +    +K  V V
Sbjct: 94  RRWDDLSKVFEWMQEREMTNA--ASYSSYFKYLGLSRDPARALQVYGAIKDQTMKVHVSV 151

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAE 210
             +++    ++G LD +F   ++M       PD +TYS L+  C K  + +    +++ +
Sbjct: 152 CNSVLGCLVKNGRLDSSFKLYDEMIR-EGLSPDPFTYSTLLSGCMKLKQGYTKAMELIND 210

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G++   V Y T++         EE E  F  M + G C P++F  +S+++AY  + 
Sbjct: 211 MKSRGLQMDIVIYGTLLAICASHNYCEEAEVYFQKMKDEGHC-PNLFHYSSLLNAYSENS 269

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           + EK E    +    G+  +   L  L K Y + G+++K + ++  ++   F    + Y 
Sbjct: 270 DYEKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYC 329

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I+I+   K G I++ +  F +MK +G+K +   +  ++SA  + G   +   + ++ E+ 
Sbjct: 330 ILIDGLVKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISALHRGGHHEESKQLAKEFESE 389

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +   D    N  +  Y    D+E +  +   M E +  PDNITF T+I+ +
Sbjct: 390 NASYDLVMLNTSLRTYCSTNDMESVMRMLKKMDELNISPDNITFNTLIRYF 440



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 116/270 (42%), Gaps = 18/270 (6%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A LL + + S GL P+  + T L+  Y + GL ++A   + ++++ S    D   Y I
Sbjct: 272 EKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELLTELEA-SGFAQDEMPYCI 330

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K  +    + +  EM   G++     ++ +I    +    EE     +   ES 
Sbjct: 331 LIDGLVKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISALHRGGHHEE-SKQLAKEFESE 389

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-K 309
               D+  LN+ +  Y ++ ++E + +   + + + +  D  T N L + +  + +Y   
Sbjct: 390 NASYDLVMLNTSLRTYCSTNDMESVMRMLKKMDELNISPDNITFNTLIRYFCNSKVYHLA 449

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAG------HIEKMEEYFKKMKHRGMKPNSIT 363
            ++V D   K       +  +++++  GK G       +  M  Y K+  H+ +   ++ 
Sbjct: 450 YKTVEDMHTKGHQLNEELCSHVMVQ-LGKGGFPSEAFSLYNMLRYSKRTVHKSLHEKALG 508

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
                    +A +++K        +N+D+I
Sbjct: 509 ILVAAELLKEAYIVVK--------DNADLI 530


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 161/343 (46%), Gaps = 4/343 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A  +F+ M   GL P+   YTAL+  Y   G  ++ F+   +M+     +
Sbjct: 47  GCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR-GGVE 105

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P++YTY+ LI    +   F+    +  EM   GI  + V+YNT+I G  +  K  +  + 
Sbjct: 106 PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWD-AAK 164

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M+ + G  P I T N ++  YG +G +     ++N+    G +    T N+L   + 
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFC 224

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RA    +    +  M++R   PT VTY I+I++F +  H+ K  E    M+  G++ ++ 
Sbjct: 225 RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH 284

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  LV A    G +     + + +    V      ++ +I  YG+ G   K  +L + M
Sbjct: 285 TYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEM 344

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           +++  +P++ ++   I+        + A+ L + M  ++  +G
Sbjct: 345 RQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIRSFAG 387



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 13/323 (4%)

Query: 139 VMLSDGLKPS-----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
            ML+ G K       V   TALV+   + G + EA    ++M  +    P+  TY+ L+ 
Sbjct: 23  AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG-LAPNEVTYTALMH 81

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
                 + +    +  EM   G+E +  TYN +I  + +  +FE   S F  M   G   
Sbjct: 82  GYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
            ++ + N++I+     G +    K  +     G +  I T N+L   YG+AG   KM + 
Sbjct: 142 -NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAG---KMSNA 197

Query: 314 MDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + F   M+   F P+ VTYN++I  F +A  + +       MK RG++P  +TY  L+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +++   + K   IL  +E + + +D   +  ++ A    G+++   +LF +M E+   P 
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS 317

Query: 431 NITFATMIQAYNALGMTEAAQNL 453
           N+ +  MI  Y   G +  A  L
Sbjct: 318 NVIYDMMIYGYGREGSSYKALKL 340



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+     L     + G   + R V D M      P  VTY  ++  +   G  EK    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+  G++PN  TY  L+  + + G   +  S+  ++    ++ +   +N +I+   + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           G +    +L   M+     P  ITF  ++  Y   G    A    N+M A
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA 206



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 4/196 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K W  A K+  ++R +   +    TF  L+   GK  +   A   F  M + G +PS   
Sbjct: 158 KLWDAA-KLLDMMRTE-GTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVT 215

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L++ + ++  +  A   ++DMK     +P   TY+ILI S  + +      +ILA M
Sbjct: 216 YNMLIAGFCRARDMTRANRALSDMKE-RGLEPTKVTYTILIDSFARENHMGKAFEILAGM 274

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+E  A TY  ++         ++    F +M E  G  P     + MI  YG  G+
Sbjct: 275 EKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEK-GVEPSNVIYDMMIYGYGREGS 333

Query: 272 IEKMEKWYNEFNLMGV 287
             K  K   E    G+
Sbjct: 334 SYKALKLIMEMRQKGL 349



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K  K   AL  F  ++    +Q    T+  L+    + +   +A+     M   GL+P+ 
Sbjct: 190 KAGKMSNALPFFNQMKAA-GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT L+ ++ +   + +AF  +  M+     + D +TY +L+++           K+  
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEKAG-LEVDAHTYGVLVRALCMEGNMKDARKLFQ 307

Query: 210 EMSYLGIECSAVTYNTIIDGYGK 232
            M   G+E S V Y+ +I GYG+
Sbjct: 308 SMGEKGVEPSNVIYDMMIYGYGR 330


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 202/451 (44%), Gaps = 64/451 (14%)

Query: 65  EKKVSS-KKYKNLWPKPVL----EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK 119
           EK V S  K K+   KP +      L   ++++ + LAL ++  + +  +   R  TF  
Sbjct: 148 EKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNR-ATFVI 206

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+  L K  + + A  +F+ M   G+ P+  +YT ++S   Q+   D+    +N MK VS
Sbjct: 207 LLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMK-VS 265

Query: 180 DCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            C PD  T + L+    K  + D    L++    E   LGI+     Y+++IDG  +AK+
Sbjct: 266 GCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK----GYSSLIDGLFRAKR 321

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E++     M ++ G  PD+     +I  +   G ++      N+    G+  D    N
Sbjct: 322 YDEVQEWCRKMFKA-GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYN 380

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K +   G+ DK RS+   + K   FPT  TY I+I    + G +++  + F +M++ 
Sbjct: 381 ALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENL 440

Query: 356 GMKPNSITYCSLVSAYSKA----------------------------------------- 374
           G  P+ +T+ +L+    KA                                         
Sbjct: 441 GCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTM 500

Query: 375 -------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
                  GLI+K   +L Q+ +S V+ D   +N +I+ + +A ++    +LF  ++ +  
Sbjct: 501 VERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGH 560

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            PD++T+ T+I  ++ +   E A  + ++M+
Sbjct: 561 SPDSVTYGTLIDGFHRVDREEDAFRVLDQMV 591



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 152/342 (44%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K    E+A   F  M   G KP V  Y +++    Q  +   A +  N M
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQM 192

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             + +  P+  T+ IL+    K  + D   K+  EM+  GI  + + Y  I+ G  +AK+
Sbjct: 193 LKL-NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKR 251

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +++    + M  SG C PD  T N+++  +   G I++       F   G    I+  +
Sbjct: 252 TDDVHRLLNTMKVSGCC-PDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYS 310

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     RA  YD+++     M K    P VV Y I+I  F + G ++        M  R
Sbjct: 311 SLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQR 370

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++  Y +L+  +   GL+ K  S+  ++  +D    +  +  +I    + G +++ 
Sbjct: 371 GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEA 430

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++F  M+   C P  +TF  +I      G  E A++L  KM
Sbjct: 431 RQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 151/335 (45%), Gaps = 17/335 (5%)

Query: 101 FGLLR--QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL+  +++ Y    + ++ L+  L + K+ ++       M   G++P V +YT L+  
Sbjct: 291 FALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRG 350

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G++D A + +NDM       PD Y Y+ LIK        D    +  E+S      
Sbjct: 351 FCEVGMVDYALNMLNDMTQ-RGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFP 409

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE----- 273
           ++ TY  +I G  +    +E    F+ M E+ GC P I T N++I     +G +E     
Sbjct: 410 TSCTYTILICGMCRNGLLDEARQIFNQM-ENLGCSPSIMTFNALIDGLCKAGELEEARHL 468

Query: 274 --KMEKWYNEFNLMGVKA------DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
             KME   N    + +        D  +L  + +    +G+  K   ++  +      P 
Sbjct: 469 FYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPD 528

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           ++TYN++I  F KA +I    + F++++ +G  P+S+TY +L+  + +         +L 
Sbjct: 529 IMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLD 588

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           Q+  +     +  + C+++   + G +     L+L
Sbjct: 589 QMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWL 623



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 1/271 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           T++++I    K   FD   KIL E+    I+    T++ +I  Y K+   E+   SF  M
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            +  GC PD+FT NS++               YN+   +    +  T  IL     + G 
Sbjct: 158 -KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D    + D M ++   P  + Y I++    +A   + +      MK  G  P+SIT  +
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+  + K G I +  ++L+  E    +L    ++ +I    +A   +++ E    M +  
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             PD + +  +I+ +  +GM + A N+ N M
Sbjct: 337 IEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           IL +++NS++ +  P F+ +I+AY ++G  EK  E F  MK+  C PD  T+ +++    
Sbjct: 118 ILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMV 177

Query: 443 ALGMTEAAQNLENKMIAMKENSGK 466
              +   A  + N+M+ +  N  +
Sbjct: 178 QKEVFLLALAVYNQMLKLNYNPNR 201


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 168/395 (42%), Gaps = 60/395 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F + +   GK    E+A  +   M+ +G  P    Y+ ++     +  ++ AF    +M
Sbjct: 459 SFARCLCGFGKF---EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEM 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  +   PDVYTY+ILI   +K          L EM   G E + VTY T+I  Y KAKK
Sbjct: 516 KG-TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKK 574

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF------------- 282
                  F  M+ + GC P++ T  ++I  Y  SGNIEK  + Y                
Sbjct: 575 VSVANELFELMI-AKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYF 633

Query: 283 ---NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
              N +  K ++ T   L     +A      R +++ M      P  + Y+ +I+ F KA
Sbjct: 634 KIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKA 693

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK---AGLIMKVDSILRQVENS---DVI 393
             +++ +E F KM  RG  PN  TY SL+    K     L++KV S  + +ENS   +++
Sbjct: 694 AKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLS--KMLENSCAPNIV 751

Query: 394 LDTPF-------------------------------FNCIISAYGQAGDVEKMGELFLTM 422
           + T                                 +  +I  +G+AG V+K  ELF  M
Sbjct: 752 IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREM 811

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             + C P+ +T+  +I    A G  + A  L  +M
Sbjct: 812 GSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 16/355 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + + A  L E M  DG +P+  VY AL+  + ++  LDEA    + M
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P+VYTYS LI    K  R DL+ K+L++M       + V Y  +IDG  K  K
Sbjct: 707 VE-RGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAK 765

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       M+E  GC P++ T  +MI  +G +G ++K  + + E    G   +  T  
Sbjct: 766 TDE-AYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYT 824

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFK 350
           +L       G  D+  ++++ M++ ++   V +Y  VIE + +      G +E++E+   
Sbjct: 825 VLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK--- 881

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP--FFNCIISAYGQ 408
                G  P  + Y  L+  + KAG +     + ++V ++ + +      +  +I ++  
Sbjct: 882 ----NGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSY 937

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           A  ++   ELF  M     +PD  TF  ++     +   E A  L + +  M  N
Sbjct: 938 ASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDIN 992



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 161/365 (44%), Gaps = 36/365 (9%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG+CK+      +  +M+++G  PS  ++ +LV AY +S     A+  +  M+   +CKP
Sbjct: 359 LGRCKR------ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC-ECKP 411

Query: 184 DVYTYSILIKS-CTKFH-----RFDLIEKILAEMSYLGI---ECSAVTYNTIIDGYGKAK 234
               Y+ILI S C+         F+L EK   EM   G    + + V++   + G+GK  
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK-- 469

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            FE+       M+ +G   PD  T + +I    N+  +E     + E    GV  D+ T 
Sbjct: 470 -FEKAYKVIHEMMGNGFV-PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            IL   + +AG+  +  + +D M +    PTVVTY  +I  + KA  +    E F+ M  
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIA 587

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---------------- 398
           +G  PN ITY +L+  Y K+G I K   I  ++     I D                   
Sbjct: 588 KGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVT 647

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++    +A  V+   +L  TM    C P+ I +  +I  +      + AQ + +KM+
Sbjct: 648 YGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV 707

Query: 459 AMKEN 463
               N
Sbjct: 708 ERGYN 712



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 126/323 (39%), Gaps = 51/323 (15%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+  +Y  ++S   ++   +EA   +N M+S S C P+V TY IL+  C    +    ++
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTS-CIPNVQTYRILLCGCLNKKQLGRCKR 364

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           IL+ M   G   S   +N+++  Y K+  F         M E   C P     N +I + 
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM-EKCECKPGYVVYNILIGSI 423

Query: 267 GNSGNI------EKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDF 316
            + G +      E  EK YNE  ++     +  +N++  S+ R     G ++K   V+  
Sbjct: 424 CSGGELPGPVTFELAEKAYNE--MLSAGTVLNKVNVV--SFARCLCGFGKFEKAYKVIHE 479

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M    F P   TY+ VI     A  +E     FK+MK  G+ P+  TY  L         
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL--------- 530

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                                     I  + +AG +++       M    C P  +T+ T
Sbjct: 531 --------------------------IDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 437 MIQAYNALGMTEAAQNLENKMIA 459
           +I AY        A  L   MIA
Sbjct: 565 LIHAYLKAKKVSVANELFELMIA 587



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           + LN+L +   R G+++     +  ++   + PT +TYN +++ F +A  ++  +   ++
Sbjct: 207 KLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHRE 266

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+  +  T      A  K G   K    L  +E  D + +T  +N +IS   +A  
Sbjct: 267 MSELGLSMDEFTLGFFAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEASF 323

Query: 412 VEKMGELFLTMKERHCVPDNITFATMI 438
            E+  +    M+   C+P+  T+  ++
Sbjct: 324 FEEAMDFLNRMRSTSCIPNVQTYRILL 350



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 45/277 (16%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++LI+ C +   +++  + L  +   G + + +TYN ++  + +A K +  +     M E
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
                                               +G+  D  TL    ++  + G   
Sbjct: 270 ------------------------------------LGLSMDEFTLGFFAQALCKVG--- 290

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           K R  +  ++K  F P  + YN +I    +A   E+  ++  +M+     PN  TY  L+
Sbjct: 291 KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
                   + +   IL  +           FN ++ AY ++ D     +L   M++  C 
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECK 410

Query: 429 PDNITFATMIQAYNALG------MTEAAQNLENKMIA 459
           P  + +  +I +  + G        E A+   N+M++
Sbjct: 411 PGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 12/234 (5%)

Query: 67  KVSSKKYKN-LWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM 123
           KV SK  +N   P  V+  E +D   K  K   A K+  L+ +++  +    T+T ++  
Sbjct: 736 KVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLM-LMMEEKGCKPNVVTYTAMIDG 794

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
            GK  + ++   LF  M S G  P+   YT L++    +G LDEA++ + +MK     K 
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPK- 853

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE---EME 240
            V +Y  +I+   +   F L   +L E+   G   + + Y  +ID + KA + E   E+ 
Sbjct: 854 HVSSYCKVIEGYKR--EFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELH 911

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               +   S     +++T  S+I ++  +  I+   + + +    GV  D+ T 
Sbjct: 912 KEVISASMSMTAKKNLYT--SLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTF 963


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 157/361 (43%), Gaps = 36/361 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            T  +  LGK  +P+ A   F+  ++ G   +V   +AL+SAY +SGL++EA   +  MK
Sbjct: 201 LTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMK 260

Query: 177 S-------------VSDCK----------------------PDVYTYSILIKSCTKFHRF 201
                         +  C                       PD  T++ L+ +C++    
Sbjct: 261 GAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHL 320

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +    +  EM +LGI     TYNT ID   K    E        M E+    P++ T ++
Sbjct: 321 EDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDM-EAKNVKPNVVTYST 379

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I  Y      ++  K Y +   +G++ D    N +   Y +AG Y ++  V D M+   
Sbjct: 380 LIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSG 439

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
                VTYN +I  +GK G ++ +    + M+ RG+ P+ +TY +L+  YSKAG+     
Sbjct: 440 IEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAF 499

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++    + S +  D   F+  I    + G VE    L   M E    P+ +T+ T+I A+
Sbjct: 500 NVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAF 559

Query: 442 N 442
            
Sbjct: 560 G 560



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 132/268 (49%), Gaps = 4/268 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+    +    E A  LF+ M+  G+   +  Y   + A  + G ++ A   + D
Sbjct: 305 KTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLD 364

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++  + KP+V TYS LI   +K  ++D   K+  +M  LGI+   V YNT++  Y KA 
Sbjct: 365 MEA-KNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAG 423

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K+ E+      M E  G   D  T NS+I+ YG  G ++ +     +    GV   + T 
Sbjct: 424 KYGEIAIVCDEM-EDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTY 482

Query: 295 NILTKSYGRAGMY-DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           + L   Y +AGM+ D     +DF ++    P VV ++  I+T  K G +E        M 
Sbjct: 483 STLIDIYSKAGMHGDAFNVYLDF-KESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMT 541

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             G+KPN +TY +++ A+ K+ ++ + D
Sbjct: 542 EMGIKPNVVTYNTIIDAFGKSKVLSEED 569



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 142/273 (52%), Gaps = 2/273 (0%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  ML D L P    + +L+SA  ++G L++A +  ++M  +   + D+YTY+  I +  
Sbjct: 292 FRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGR-DIYTYNTFIDAIC 350

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K    +L  ++L +M    ++ + VTY+T+IDGY K +K++E    +  M +S G   D 
Sbjct: 351 KCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKM-KSLGIQLDR 409

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
              N++++ Y  +G   ++    +E    G++ D  T N L   YG+ G  D +  ++  
Sbjct: 410 VCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQD 469

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++R   P+V+TY+ +I+ + KAG        +   K  G+KP+ + + S +   +K GL
Sbjct: 470 MRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGL 529

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           +    S+L  +    +  +   +N II A+G++
Sbjct: 530 VEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKS 562


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 179/368 (48%), Gaps = 15/368 (4%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q   ++    +   L+  L K  +  +   +++ M+   ++P++  +   ++   ++G L
Sbjct: 157 QDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKL 216

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIK------SCTKFHRFDLIEKILAEMSYLGIECS 219
           ++A   I D+K+     P++ TY+ LI       S  K +R D    IL EM    I  +
Sbjct: 217 NKAEDVIEDIKAWG-FSPNIVTYNTLIDGHCKKGSAGKMYRAD---AILKEMLANKICPN 272

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            +T+NT+IDG+ K +     +++F  M +  G  P+I T NS+I+   N+G +++    +
Sbjct: 273 EITFNTLIDGFCKDENVLAAKNAFEEM-QRQGLKPNIVTYNSLINGLSNNGKLDEAIALW 331

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           ++   +G+K +I T N L   + +  M  + R + D + ++   P  +T+N +I+ F KA
Sbjct: 332 DKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKA 391

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G +E+       M   G+ PN  TY  L++   +   +     +L ++EN ++  D   +
Sbjct: 392 GMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTY 451

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I  + + G+  K  +L   M      P+++T+ T++  Y   G  +AA  +  +M  
Sbjct: 452 NILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQM-- 509

Query: 460 MKENSGKK 467
             E  GK+
Sbjct: 510 --EKEGKR 515



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 141/319 (44%), Gaps = 37/319 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    K +    A   FE M   GLKP++  Y +L++    +G LDEA +  + M
Sbjct: 275 TFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM 334

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   KP++ T++ LI    K        K+  +++   +  +A+T+NT+ID + KA  
Sbjct: 335 VGLG-LKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGM 393

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE  +  ++M++ G   P++ T N +I+    + N+   +K  NE     +KAD     
Sbjct: 394 MEEGFALHNSMLDEG-IFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKAD----- 447

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                                         VVTYNI+I  + K G   K E+   +M + 
Sbjct: 448 ------------------------------VVTYNILIGGWCKDGEPSKAEKLLGEMLNV 477

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN +TY +L+  Y   G +     +  Q+E      +   +N +I  + + G +E  
Sbjct: 478 GVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDA 537

Query: 416 GELFLTMKERHCVPDNITF 434
             L   M E+   P+  T+
Sbjct: 538 NRLLNEMLEKGLNPNRTTY 556



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 165/351 (47%), Gaps = 5/351 (1%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDE 167
           Q    TF   +  L K  +  +A  + E + + G  P++  Y  L+  +   G +G +  
Sbjct: 197 QPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYR 256

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A + + +M +   C P+  T++ LI    K       +    EM   G++ + VTYN++I
Sbjct: 257 ADAILKEMLANKIC-PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLI 315

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +G     K +E  + +  MV   G  P+I T N++I+ +     I++  K +++     +
Sbjct: 316 NGLSNNGKLDEAIALWDKMV-GLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDL 374

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             +  T N +  ++ +AGM ++  ++ + M     FP V TYN +I    +  ++   ++
Sbjct: 375 VPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKK 434

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
              +M++  +K + +TY  L+  + K G   K + +L ++ N  V  +   +N ++  Y 
Sbjct: 435 LLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYC 494

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             G+++   ++   M++     + +T+  +I+ +   G  E A  L N+M+
Sbjct: 495 MEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEML 545



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 5/216 (2%)

Query: 250 GGCHP--DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           GG  P  +    + ++ AY  +  I    + +      G K  + + N L  +  +    
Sbjct: 122 GGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNET 181

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +M+ V   M KR   P + T+NI I    KAG + K E+  + +K  G  PN +TY +L
Sbjct: 182 GEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTL 241

Query: 368 VSAYSK---AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
           +  + K   AG + + D+IL+++  + +  +   FN +I  + +  +V      F  M+ 
Sbjct: 242 IDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQR 301

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +   P+ +T+ ++I   +  G  + A  L +KM+ +
Sbjct: 302 QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGL 337


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 171/351 (48%), Gaps = 11/351 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K    E+A  L   M S G  P+V  Y+ L++   + G +DEA   I +M
Sbjct: 74  TYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 133

Query: 176 KSVS-DCKPDVYTY-SILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYG 231
              S D  P++ TY S L   C +    +  E  + L + S L +    VT++T+IDG  
Sbjct: 134 TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS-LRVSPDTVTFSTLIDGLC 192

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +E  S F  M+ +GG  P++ T N++++    +  +E+           GV  D+
Sbjct: 193 KCGQIDEACSVFDDMI-AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDV 251

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV-----VTYNIVIETFGKAGHIEKME 346
            T ++L  ++ +A   D+   ++  M  R   P V     VT+NI+I    KAG+ E+  
Sbjct: 252 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQAS 311

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F++M  + ++P+ +T+ +L+    KAG +     IL  + N  V  +   +N ++   
Sbjct: 312 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 371

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++G +E+  +    M    CVPD+IT+ +++ A      T+ A  L +++
Sbjct: 372 CKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 422



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 13/331 (3%)

Query: 125 GKCKQPEQASLLFEVM--LSDG---LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           G CKQ   A    E+M  L DG   + P    ++ L+    + G +DEA S  +DM +  
Sbjct: 153 GLCKQSMTAEAC-ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA-G 210

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              P+V TY+ L+    K  + +    ++  M   G+    +TY+ ++D + KA + +E 
Sbjct: 211 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 270

Query: 240 ESSFSAMVESGGCHPDIF-----TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                 M  S GC P++      T N +I+    +GN E+    + E     ++ D+ T 
Sbjct: 271 LELLHGMA-SRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTF 329

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L     +AG  +  R ++D M      P VVTYN ++    K+G IE+  ++ ++M  
Sbjct: 330 GALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVS 389

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P+SITY SLV A  +A        ++ ++++     DT  +N ++    ++G  E+
Sbjct: 390 SGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQ 449

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALG 445
              +   M  +   PD+ TFA      +  G
Sbjct: 450 AITVLEEMVGKGHQPDSFTFAACFSGLHRSG 480



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 181/399 (45%), Gaps = 16/399 (4%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQ 108
           L K+ R + A + I++   ++K  ++ P  +     LD   KQ     A ++   LR   
Sbjct: 117 LCKVGRIDEARELIQEM--TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 174

Query: 109 W-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
                   TF+ L+  L KC Q ++A  +F+ M++ G  P+V  Y ALV+   ++  ++ 
Sbjct: 175 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMER 234

Query: 168 AFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA----- 220
           A + I  M  K V+   PDV TYS+L+ +  K  R D   ++L  M+  G   +      
Sbjct: 235 AHAMIESMVDKGVT---PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDK 291

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VT+N +I G  KA  FE+  + F  MV +    PD+ T  ++I     +G +E      +
Sbjct: 292 VTFNILIAGACKAGNFEQASALFEEMV-AKNLQPDVMTFGALIDGLCKAGQVEAARDILD 350

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
               +GV  ++ T N L     ++G  ++    ++ M      P  +TY  ++    +A 
Sbjct: 351 LMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRAS 410

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             +   +   ++K  G  P+++TY  LV    K+G   +  ++L ++       D+  F 
Sbjct: 411 RTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFA 470

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              S   ++G++    EL   +  +  +PD  T ++++ 
Sbjct: 471 ACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 509



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 11/327 (3%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  DG+ P++  Y  +++   +S  L        ++       PDV TY+ LI S  K  
Sbjct: 28  MARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGH-HPDVVTYNTLIDSLCKAG 86

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV-ESGGCHPDIFT 258
             +   ++  +MS  G   + VTY+ +I+G  K  + +E       M  +S    P+I T
Sbjct: 87  DLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 146

Query: 259 LNSMISAYG-NSGNIEKME--KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
            NS +      S   E  E  +   + +L  V  D  T + L     + G  D+  SV D
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLR-VSPDTVTFSTLIDGLCKCGQIDEACSVFD 205

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M    + P V+TYN ++    KA  +E+     + M  +G+ P+ ITY  LV A+ KA 
Sbjct: 206 DMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 265

Query: 376 LIMKVDSIL-----RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            + +   +L     R    + ++ D   FN +I+   +AG+ E+   LF  M  ++  PD
Sbjct: 266 RVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 325

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            +TF  +I      G  EAA+++ + M
Sbjct: 326 VMTFGALIDGLCKAGQVEAARDILDLM 352



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 143/308 (46%), Gaps = 10/308 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M
Sbjct: 218 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 277

Query: 176 KSVSDCKPDVY-----TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            S   C P+V      T++ILI    K   F+    +  EM    ++   +T+  +IDG 
Sbjct: 278 AS-RGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            KA + E        M  + G  P++ T N+++     SG IE+  ++  E    G   D
Sbjct: 337 CKAGQVEAARDILDLM-GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD 395

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   L  +  RA   D    ++  ++   + P  VTYNI+++   K+G  E+     +
Sbjct: 396 SITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 455

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  +G +P+S T+ +  S   ++G +     +LR V    ++ D    + I+    ++G
Sbjct: 456 EMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSG 515

Query: 411 ---DVEKM 415
              DV+ M
Sbjct: 516 KLDDVKAM 523



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 46/320 (14%)

Query: 185 VYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           V  Y+I+++S C        +E    EM+  G+  + VTYNTII+G  K+         F
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             +VE G  HPD+ T N++I +   +G++E+  + + + +  G   ++ T ++L     +
Sbjct: 61  EELVERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCK 119

Query: 304 AGMYDKMRSVMDFMQKRF--FFPTVVTYN------------------------------- 330
            G  D+ R ++  M ++     P ++TYN                               
Sbjct: 120 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 179

Query: 331 ------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                  +I+   K G I++    F  M   G  PN ITY +LV+   KA  + +  +++
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-----VPDNITFATMIQ 439
             + +  V  D   ++ ++ A+ +A  V++  EL   M  R C     VPD +TF  +I 
Sbjct: 240 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIA 299

Query: 440 AYNALGMTEAAQNLENKMIA 459
                G  E A  L  +M+A
Sbjct: 300 GACKAGNFEQASALFEEMVA 319



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 2/204 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    TF  L+  L K  Q E A  + ++M + G+ P+V  Y ALV    +SG ++EA  
Sbjct: 323 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQ 382

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            + +M S S C PD  TY  L+ +  +  R D   ++++E+   G +   VTYN ++DG 
Sbjct: 383 FLEEMVS-SGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 441

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K+ K E+  +    MV  G   PD FT  +  S    SGN+    +        G+  D
Sbjct: 442 WKSGKTEQAITVLEEMVGKGH-QPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPD 500

Query: 291 IQTLNILTKSYGRAGMYDKMRSVM 314
             T + +     R+G  D +++++
Sbjct: 501 ATTCSSILDWVCRSGKLDDVKAMI 524


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 166/382 (43%), Gaps = 13/382 (3%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P++   D    +  W+L + +     + +  +    T+T L+  L      + A  LF  
Sbjct: 326 PIIALCDMGCYEDAWRLFVDM-----KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 380

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  DG+ P+   Y AL++   ++  +  AF  +N M   + C P++ TY+ +IK      
Sbjct: 381 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-NGCSPNIVTYNEMIKGYCILG 439

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                  ++  M   G   + VTYNTII GY  +            M   GGC PD ++ 
Sbjct: 440 DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM-RDGGCKPDEWSY 498

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             +I  +     I KME  +  FN M   G+  +  T   L   Y +    D   S+++ 
Sbjct: 499 TELICGFCK---ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 555

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P V TYN++I    K  +    EE  K M   G+ PN +TY +++    K G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                 +  ++     + +   ++ +I A GQ G VE+   LF  ++    +PD IT+  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           MI+AY   G  E A N   +MI
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMI 697



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 156/380 (41%), Gaps = 37/380 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            TFT   ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I
Sbjct: 249 DTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLI 308

Query: 173 N----------------------DMKSVSD------------CKPDVYTYSILIKSCTKF 198
                                  DM    D            C+P+VYTY+ LI      
Sbjct: 309 REMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
               +   +   MS  G+  + VTYN +I+   + ++ +      + M  +G C P+I T
Sbjct: 369 GLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-CSPNIVT 427

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N MI  Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+
Sbjct: 428 YNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR 487

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P   +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   + 
Sbjct: 488 DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLD 547

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
              S+L  ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI
Sbjct: 548 TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607

Query: 439 QAYNALGMTEAAQNLENKMI 458
                 G T  A  + NKMI
Sbjct: 608 DGLCKNGSTSLALEMFNKMI 627



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 159/351 (45%), Gaps = 18/351 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            ++ L++ L +          +  MLS+G++P++ +Y A+++A  + G + +A  TI  M
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--M 238

Query: 176 KSV--SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           K V  S+  PD +TY+ +I    + H  D   ++  +M+  G E + VTY+T+I+G   +
Sbjct: 239 KKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +  E       M+   G  P   T    I A  + G  E   + + +    G + ++ T
Sbjct: 299 GRVNEAFDLIREMILH-GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYT 357

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L      +G+      +   M +   FP  VTYN +I    +   I+        M 
Sbjct: 358 YTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG 417

Query: 354 HRGMKPNSITYCSLVSAYS------KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             G  PN +TY  ++  Y       KA L+M  +++L++  +++++     +N II  Y 
Sbjct: 418 RNGCSPNIVTYNEMIKGYCILGDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYC 471

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +G+      +   M++  C PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 472 DSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 224

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 225 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 283

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 284 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 343

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             MK++G +PN  TY +L+S    +GL+     +  ++    V  +T  +N +I+   + 
Sbjct: 344 VDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ++    +   M    C P+ +T+  MI+ Y  LG  + A  + N M+
Sbjct: 404 RRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 127/313 (40%), Gaps = 27/313 (8%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K     LAL++F  + +Q        T++ L+  LG+  + E+A  LF  +   G
Sbjct: 607 IDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK----------- 193
           L P    Y  ++ AY  SG ++ AF+ +  M   + C+P ++TY +LIK           
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQPTLWTYGVLIKGLKNEYLLADQ 724

Query: 194 ----------SCTKFHRF---DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
                     +C+  ++    D +  + A+++ L    S    N ++     A ++ E  
Sbjct: 725 RLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEAN 784

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
               +M+  G C PD    NS++ +     N++     +   +  G +  +     L  +
Sbjct: 785 ELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICA 843

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +     + R   + M  R + P  V   ++I+   + G+ +   E+   M+ R   P+
Sbjct: 844 LCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903

Query: 361 SITYCSLVSAYSK 373
              Y  L    SK
Sbjct: 904 FHIYTILAREASK 916



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 166 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 149 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 197/438 (44%), Gaps = 18/438 (4%)

Query: 26  FRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEAL 85
           FR+ AI  +P  ++ L   K     +  +LR    +  I    S   Y NL        L
Sbjct: 123 FRVDAITFTP-LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFS---YNNL--------L 170

Query: 86  DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSD 143
                + + Q AL++  ++   +   +     +   V+ G  K+   ++A   +  ML  
Sbjct: 171 KGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR 230

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-SILIKSCTKFHRFD 202
           G+ P V  Y+++++A  ++  +D+A   +N M   +   PD  TY SIL   C+     +
Sbjct: 231 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNSILHGYCSSGQPKE 289

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            I   L +M   G+E + VTY+++++   K  +  E    F +M + G   PDI T  ++
Sbjct: 290 AI-GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG-LEPDIATYRTL 347

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +  Y   G + +M    +     G++ D    NIL  +Y +    D+   V   M++   
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VV Y  VI+   K+G ++    YF++M   G+ PN I Y SL+          K + 
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      PD IT+ T+I    
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527

Query: 443 ALGMTEAAQNLENKMIAM 460
             G  + A  L   M+++
Sbjct: 528 LAGKMDEATKLLASMVSV 545



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 157/353 (44%), Gaps = 11/353 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    K ++ +QA L+F  M   GL P+V  Y  ++    +SG +D+A      
Sbjct: 377 HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQ 436

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P++  Y+ LI       ++D  E+++ EM   GI  + + +N+IID + K  
Sbjct: 437 MID-EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEG 495

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E E  F  MV  G   PDI T N++I     +G +++  K       +GVK DI T 
Sbjct: 496 RVIESEKLFDLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 554

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y R    D   ++   M      P ++TYNI+++           +E +  +  
Sbjct: 555 GTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITK 614

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGD 411
            G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G 
Sbjct: 615 SGTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           +++  +LF        VPD  T++ M +     G  E    L++  ++M+EN 
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLE---ELDDLFLSMEENG 721



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 157/372 (42%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ+K   A+ +F  +RQ          +  ++ +L K    + A L FE M+ +GL P++
Sbjct: 388 KQEKVDQAMLVFSKMRQH-GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VYT+L+         D+A   I +M     C                            
Sbjct: 447 IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TY+ LI  C    + D   K+LA M  +G++   VTY T+I+GY +  +
Sbjct: 507 MVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR 566

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F  MV SG   P+I T N ++    ++      ++ Y      G + ++ T N
Sbjct: 567 MDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYN 625

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G +++ ++ F     
Sbjct: 626 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKCGRMDEAKDLFAAHSA 684

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + G + ++D +   +E +    D+   N I+    Q GD+ +
Sbjct: 685 NGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITR 744

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 745 AGTYLFMIDEKH 756



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 203
           + P+V  Y  L+    ++G LD  F+ + ++      + D  T++ L+K  C      D 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK-KGFRVDAITFTPLLKGLCADKRTSDA 146

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNS 261
           ++ +L  M+ LG      +YN ++ G     + +E       M +   GG  PD+ + N+
Sbjct: 147 MDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++ +   G+ +K    Y+E    G+  D+ T + +  +  +A   DK   V++ M K  
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +TYN ++  +  +G  ++     KKM+  G++PN +TY SL++   K G   +  
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I   +    +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 158/343 (46%), Gaps = 7/343 (2%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 179 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             C PDV++Y+ L+K  C +    + +E   ++A+    G     V+YNT+++G+ K   
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  S++  M++  G  PD+ T +S+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 217 SDKAYSTYHEMLDR-GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   Y  +G   +    +  M+     P VVTY+ ++    K G   +  + F  M  R
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+  TY +L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +   V++ 
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M++    P+ + + T+I      G  + A     +MI
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMI 438



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T+  ++       QP++A    + M SDG++P+V  Y++L++   ++G   EA    +
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      +PD+ TY  L++          +  +L  M   GI+     +N +I  Y K 
Sbjct: 331 SMTK-RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQ 389

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +K ++    FS M +  G +P++    ++I     SG+++    ++ +    G+  +I  
Sbjct: 390 EKVDQAMLVFSKMRQH-GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIV 448

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L         +DK   ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 449 YTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 508

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+     AG + +   +L  + +  V  D   +  +I+ Y +   ++
Sbjct: 509 RIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMD 568

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M      P+ IT+  ++Q       T AA+ L
Sbjct: 569 DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 162/360 (45%), Gaps = 7/360 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    + ++ + A   F  +L  G+K  V V ++L+     +   DEA   +   
Sbjct: 105 TYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHR 164

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                C PD  +YS ++KS     R     D++   + +    G  C+ V Y+T++ G  
Sbjct: 165 MPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGG--GCPCNVVVYSTVVHGLF 222

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  K  E    F  M + G   P++ T NS+I A   +  ++K +    +    GV+ D 
Sbjct: 223 KEGKVGEACDLFHEMTQQG-VPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDN 281

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L   Y   G + +   +   M  R   P  VT +  +    K G IE+  E+F  
Sbjct: 282 VTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDS 341

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M  +G K N I+Y +L+  Y+ AG ++ + ++   +    ++ +   FN +++ Y + G 
Sbjct: 342 MLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGM 401

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           V +   +F  M++R   PD +T+  +I A+  +G  + A +  N MI         + QC
Sbjct: 402 VREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQC 461



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 149/321 (46%), Gaps = 2/321 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G   +V VY+ +V    + G + EA    ++M       P+V TY+ +I +  K    D 
Sbjct: 206 GCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQ-QGVPPNVVTYNSVIHALCKARAVDK 264

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            + IL +M   G++   VTYNT+I GY    ++++    F  M  S G  P+  T ++ +
Sbjct: 265 AQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMT-SRGVIPNTVTCSTFV 323

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     G IE+  ++++     G K +I + + L   Y  AG    M ++ + M +    
Sbjct: 324 AFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIV 383

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P    +NI++  + K G + +    F+ M+ RG+ P+ +TY +++ A+ + G +      
Sbjct: 384 PNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDK 443

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              + +  V  +   + C+I  +   GD+ K  EL   ++ +   P  ++FA++I     
Sbjct: 444 FNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCK 503

Query: 444 LGMTEAAQNLENKMIAMKENS 464
            G    AQ + + +I   E +
Sbjct: 504 EGRVFEAQRIFDMIIRTGEKA 524



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 4/330 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF  M   G+ P+V  Y +++ A  ++  +D+A   +  M   +  +PD  TY+ L
Sbjct: 229 EACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG-NGVQPDNVTYNTL 287

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  EM+  G+  + VT +T +    K  + EE    F +M+  G 
Sbjct: 288 IHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKG- 346

Query: 252 CHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            H  +I + ++++  Y  +G +  M   +N     G+  +    NIL   Y + GM  + 
Sbjct: 347 -HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA 405

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             + + MQKR   P V+TY  VI  F + G ++   + F  M  +G++PN   Y  L+  
Sbjct: 406 MFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQG 465

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +   G ++K + ++ ++ N  +      F  +I+   + G V +   +F  +       D
Sbjct: 466 FCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKAD 525

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAM 460
              F ++I  Y  +G    A  + + M+++
Sbjct: 526 VNIFTSLIDGYCLIGKMSEAFRVHDAMVSV 555



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F  L+  L K  +  +A  +F++++  G K  V+++T+L+  Y   G + EAF   + M
Sbjct: 493 SFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAM 552

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            SV   +PD+ TY  L+  C K  R D    +  E+ + G++ +  TY  I+DG   A +
Sbjct: 553 VSVG-IEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
               +  F  M+ESG     I T + +++    +   E+    + +   M VK DI  LN
Sbjct: 612 TAAAKEMFQEMIESG-IAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILN 670

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     +A   ++   +   +      PTV TY I++E   K G +E+ E  F  M   
Sbjct: 671 IMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKS 730

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G+ P S     +V    + G I+K    + +V+   ++ +    + ++S +   G
Sbjct: 731 GLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKG 785



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 157/371 (42%), Gaps = 4/371 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA-SLLFEVMLSD 143
           +D   + ++  LA   FG L +Q   +A     + L+  L   K+ ++A  +LF  M   
Sbjct: 110 IDCCCRARRLDLAFAFFGCLLRQGM-KADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPEL 168

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTIN-DMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           G  P    Y+ ++ +    G    A   +   +K    C  +V  YS ++    K  +  
Sbjct: 169 GCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVG 228

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               +  EM+  G+  + VTYN++I    KA+  ++ +     MV   G  PD  T N++
Sbjct: 229 EACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMV-GNGVQPDNVTYNTL 287

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  Y   G  ++  + + E    GV  +  T +       + G  ++ R   D M  +  
Sbjct: 288 IHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGH 347

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
              +++Y+ ++  +  AG +  M   F  M   G+ PN   +  LV+ Y+K G++ +   
Sbjct: 348 KLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMF 407

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           I   ++   +  D   +  +I A+ + G ++   + F  M ++   P+   +  +IQ + 
Sbjct: 408 IFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFC 467

Query: 443 ALGMTEAAQNL 453
             G    A+ L
Sbjct: 468 THGDLVKAEEL 478



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 8/275 (2%)

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
           S LF +M+ DG+ P+  V+  LV+ Y + G++ EA     DM+      PDV TY  +I 
Sbjct: 371 SNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQK-RGLNPDVLTYLAVIH 429

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESG 250
           +  +    D        M   G+E +   Y  +I G+   G   K EE+       + + 
Sbjct: 430 AFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYE----IRNK 485

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P I +  S+I+     G + + ++ ++     G KAD+     L   Y   G   + 
Sbjct: 486 GLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEA 545

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V D M      P +VTY  ++    K G I+     F+++ H+G+KP + TY  ++  
Sbjct: 546 FRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDG 605

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              AG       + +++  S + +  P ++ +++ 
Sbjct: 606 LFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTG 640



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 8/347 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    KC    +A  +FE M   GL P V  Y A++ A+ + G +D+A    N 
Sbjct: 387 HVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNH 446

Query: 175 MKSVSDCKPDVYTYSILIKS-CTKFHRFDLI--EKILAEMSYLGIECSAVTYNTIIDGYG 231
           M      +P+   Y  LI+  CT     DL+  E+++ E+   G+    +++ ++I+   
Sbjct: 447 MID-KGVEPNFAVYQCLIQGFCT---HGDLVKAEELVYEIRNKGLGPCILSFASLINHLC 502

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  +  E +  F  ++ +G    D+    S+I  Y   G + +  + ++    +G++ DI
Sbjct: 503 KEGRVFEAQRIFDMIIRTGE-KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDI 561

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L     + G  D    +   +  +   PT  TY I+++    AG     +E F++
Sbjct: 562 VTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQE 621

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+     TY  L++   +     +  ++ +++   +V  D    N +IS   +A  
Sbjct: 622 MIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARR 681

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            E+   LF ++ +   VP   T+  M++     G  E A+ + + M+
Sbjct: 682 REEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVML 728



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/386 (17%), Positives = 148/386 (38%), Gaps = 35/386 (9%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           QQ       T+  ++  L K +  ++A  +   M+ +G++P    Y  L+  Y   G   
Sbjct: 239 QQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWK 298

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A     +M S     P+  T S  +    K  R +   +    M   G + + ++Y+T+
Sbjct: 299 QAVRMFKEMTS-RGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTL 357

Query: 227 IDGYGKAKKFEEMESSFSAMVESG----------------------------------GC 252
           + GY  A    +M + F+ MV  G                                  G 
Sbjct: 358 LHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGL 417

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
           +PD+ T  ++I A+   G+++     +N     GV+ +      L + +   G   K   
Sbjct: 418 NPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEE 477

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  ++ +   P ++++  +I    K G + + +  F  +   G K +   + SL+  Y 
Sbjct: 478 LVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYC 537

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
             G + +   +   + +  +  D   +  +++   + G ++    LF  +  +   P   
Sbjct: 538 LIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTF 597

Query: 433 TFATMIQAYNALGMTEAAQNLENKMI 458
           T+  ++      G T AA+ +  +MI
Sbjct: 598 TYGIILDGLFHAGRTAAAKEMFQEMI 623


>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rhodocnemis]
          Length = 345

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 135/268 (50%), Gaps = 5/268 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  Y + KKF E  S 
Sbjct: 20  PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSV 79

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L + YG
Sbjct: 80  FSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYG 138

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            A ++ +   +   MQ++     VVTYN +I  +GK    EK     ++M+ RG++PNSI
Sbjct: 139 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 198

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     L   +
Sbjct: 199 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAA 450
           K     PDNI   T I      G  E A
Sbjct: 259 KR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 128/251 (50%), Gaps = 1/251 (0%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I + +  LG     V YN +I+ +GKAK F E  S  S M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLTMY 67

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 247

Query: 447 TEAAQNLENKM 457
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 157/347 (45%), Gaps = 11/347 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 6   AISIFSRLKRLG-FMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 64

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 65  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSMI  YG +   EK  
Sbjct: 124 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 241 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           D   F  +I    +      + E+F  M+     PD+   A ++ AY
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 343



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 4/336 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A  +F+ M   GL P+   YTAL+  Y   G  ++ F+   +M+     +
Sbjct: 47  GCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR-GGVE 105

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P++YTY+ LI    +   F+    +  EM   GI  + V+YNT+I G  +  K  +  + 
Sbjct: 106 PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWD-AAK 164

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M+ + G  P I T N ++  YG +G +     ++N+    G +    T N+L   + 
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFC 224

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RA    +    +  M++R   PT VTY I+I++F +  H+ K  E    M+  G++ ++ 
Sbjct: 225 RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH 284

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  LV A    G +     + + +    V      ++ +I  YG+ G   K  +L + M
Sbjct: 285 TYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEM 344

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +++  +P++ ++   I+        + A+ L + M+
Sbjct: 345 RQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMV 380



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 13/323 (4%)

Query: 139 VMLSDGLKPS-----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
            ML+ G K       V   TALV+   + G + EA    ++M  +    P+  TY+ L+ 
Sbjct: 23  AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG-LAPNEVTYTALMH 81

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
                 + +    +  EM   G+E +  TYN +I  + +  +FE   S F  M   G   
Sbjct: 82  GYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
            ++ + N++I+     G +    K  +     G +  I T N+L   YG+AG   KM + 
Sbjct: 142 -NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAG---KMSNA 197

Query: 314 MDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + F   M+   F P+ VTYN++I  F +A  + +       MK RG++P  +TY  L+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +++   + K   IL  +E + + +D   +  ++ A    G+++   +LF +M E+   P 
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS 317

Query: 431 NITFATMIQAYNALGMTEAAQNL 453
           N+ +  MI  Y   G +  A  L
Sbjct: 318 NVIYDMMIYGYGREGSSYKALKL 340



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 14/259 (5%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G C+  +   A+ L ++M ++G +PS+  +  LV  YG++G +  A    N MK+ +
Sbjct: 149 LIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA-A 207

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKK 235
             +P   TY++LI    +        + L++M   G+E + VTY  +ID + +     K 
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKA 267

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FE +     A +E  G   D  T   ++ A    GN++   K +      GV+      +
Sbjct: 268 FEIL-----AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYD 322

Query: 296 ILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           ++   YGR G  Y  ++ +M+ M+++   P   +Y + I    K    ++ E     M  
Sbjct: 323 MMIYGYGREGSSYKALKLIME-MRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVR 381

Query: 355 RGMKPNSITYCSLVSAYSK 373
            G++ +     +L+ A ++
Sbjct: 382 AGLQTSESICQALLDAKAR 400



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+     L     + G   + R V D M      P  VTY  ++  +   G  EK    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M+  G++PN  TY  L+  + + G   +  S+  ++    ++ +   +N +I+   + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           G +    +L   M+     P  ITF  ++  Y   G    A    N+M A
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA 206



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 2/172 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+   GK  +   A   F  M + G +PS   Y  L++ + ++  +  A   ++DM
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     +P   TY+ILI S  + +      +ILA M   G+E  A TY  ++        
Sbjct: 240 KE-RGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGN 298

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            ++    F +M E  G  P     + MI  YG  G+  K  K   E    G+
Sbjct: 299 MKDARKLFQSMGEK-GVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGL 349



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K  K   AL  F  ++    +Q    T+  L+    + +   +A+     M   GL+P+ 
Sbjct: 190 KAGKMSNALPFFNQMKAAG-FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YT L+ ++ +   + +AF  +  M+  +  + D +TY +L+++           K+  
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEK-AGLEVDAHTYGVLVRALCMEGNMKDARKLFQ 307

Query: 210 EMSYLGIECSAVTYNTIIDGYGK 232
            M   G+E S V Y+ +I GYG+
Sbjct: 308 SMGEKGVEPSNVIYDMMIYGYGR 330


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 490 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 545

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      P+ YTY  +I    K  R D   K+  EM   G ++  AV YN +I GY    
Sbjct: 546 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 605

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +        MVE G     + T N ++ A    G   +  +   E    G+  D+ T 
Sbjct: 606 KLDTALLYRDRMVERGVAM-TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 664

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NIL   + + G   K   + + M +R    TVVTY  +I    K G +++ ++ F +   
Sbjct: 665 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 724

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG++P+ + Y +L++++S +G I +   I+ ++E   +  D   +N ++      G V++
Sbjct: 725 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 784

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +L   M ER   PD +T+ T+I  Y+  G  + A  + N+M+
Sbjct: 785 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 828



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 13/376 (3%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL I   +R++        T+  ++    K  + ++A  +F+ ML+ G +KP  
Sbjct: 532 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 591

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL+  Y   G LD A     D          V TY++L+ +     R     +++ 
Sbjct: 592 VMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE 650

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+     TYN +I+G+ K    ++    F  M   G     + T  ++I A    
Sbjct: 651 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG-VRATVVTYTALIYALSKK 709

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++ +K ++E    G++ D+   N L  S+  +G  D+   +M  M+K+   P  VTY
Sbjct: 710 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 769

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++      G +++  +   +M  RG++P+ +TY +L+S YS  G +     I  ++ N
Sbjct: 770 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 829

Query: 390 SDVILDTPFFNCIISAY---GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
                    +N +I      GQ  D E M +    M E    PD+ T+ ++I+       
Sbjct: 830 KGFNPTLLTYNALIQGLCKNGQGDDAENMVK---EMVENGITPDDSTYISLIEGLT---- 882

Query: 447 TEAAQNLENKMIAMKE 462
           TE  + ++++ +A  +
Sbjct: 883 TEDERAIDDERLAAAD 898


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 4/359 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR  +    R        ++ G CK     +A   +  M S G+ P V  Y+ L+  + 
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFC 318

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G L  AFS +N+M ++ +  PDVYTY+ILI +  K  +    + +L  M+  G++ + 
Sbjct: 319 LAGQLMGAFSLLNEM-TLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNV 377

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTY+T++DGY    +    +  F AMV++   +P + + N MI+      ++++      
Sbjct: 378 VTYSTLMDGYCLVGEVHNAKQIFHAMVQTE-VNPSVCSYNIMINGLCKGKSVDEAMNLLR 436

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E     V  +  T N L     ++G       +M  +  R     V+TY  +++   K  
Sbjct: 437 EMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQ 496

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           +++K    F KMK RG++PN  TY +L+    K   +     + + +      +D   +N
Sbjct: 497 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYN 556

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I    + G +++   +   M++  C+PD +TF  +I++       + A+ L ++MIA
Sbjct: 557 VMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIA 615



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 156/350 (44%), Gaps = 14/350 (4%)

Query: 110 YQARCQTFTKLMVMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           YQ      T LM   G C + E + SL F + +++ G + +   Y  L++   + G   E
Sbjct: 198 YQPNTIILTTLMK--GLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIG---E 252

Query: 168 AFSTINDMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
               I  ++ + D   +PDV  Y+ +I    K    +       EM+  GI    +TY+T
Sbjct: 253 TRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYST 312

Query: 226 IIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           +I G+  A    ++  +FS + E      +PD++T   +I A    G +++ +       
Sbjct: 313 LICGFCLAG---QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMT 369

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             GVK ++ T + L   Y   G     + +   M +    P+V +YNI+I    K   ++
Sbjct: 370 KEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVD 429

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +     ++M H+ + PN++TY SL+    K+G I     +++++ +     D   +  ++
Sbjct: 430 EAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLL 489

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               +  +++K   LF+ MKER   P+  T+  +I         + AQ L
Sbjct: 490 DGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKL 539



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 152/346 (43%), Gaps = 20/346 (5%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K    A  L + M   G++P +   + L++ +   G +  +FS +  + 
Sbjct: 135 FGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKIL 194

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
            +   +P+    + L+K  C K        FH     +K++A+    G + + V+Y T++
Sbjct: 195 KLGY-QPNTIILTTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMNQVSYGTLL 244

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +G  K  +          M+E     PD+   N++I        + +   +Y E N  G+
Sbjct: 245 NGLCKIGE-TRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGI 303

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+ T + L   +  AG      S+++ M  +   P V TY I+I+   K G +++ + 
Sbjct: 304 FPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKN 363

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
               M   G+KPN +TY +L+  Y   G +     I   +  ++V      +N +I+   
Sbjct: 364 LLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLC 423

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +   V++   L   M  ++ VP+ +T+ ++I      G   +A +L
Sbjct: 424 KGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 132/303 (43%), Gaps = 13/303 (4%)

Query: 55  LRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARC 114
           L  E  +KNI   V +  Y  L        +D   K+ K + A  + G++  ++  +   
Sbjct: 329 LLNEMTLKNINPDVYT--YTIL--------IDALCKEGKLKEAKNLLGVM-TKEGVKPNV 377

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ LM       +   A  +F  M+   + PSV  Y  +++   +   +DEA + + +
Sbjct: 378 VTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLRE 437

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M    +  P+  TY+ LI    K  R      ++ E+ + G     +TY +++DG  K +
Sbjct: 438 MLH-KNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQ 496

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             ++  + F  M E G   P+ +T  ++I        ++  +K +    + G   D+ T 
Sbjct: 497 NLDKAIALFMKMKERG-IQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTY 555

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N++     + GM D+  ++   M+     P  VT+ I+I +  +    +K E+   +M  
Sbjct: 556 NVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIA 615

Query: 355 RGM 357
           +G+
Sbjct: 616 KGL 618



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 136/302 (45%), Gaps = 6/302 (1%)

Query: 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223
           ++ +A S  N M  + +  P +  +  ++ S  K   F     +  +M   GIE   VT 
Sbjct: 112 VVHDAVSQFNGMLLMRN-TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTL 170

Query: 224 NTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           + +I+ +       +M  SFS +  +   G  P+   L +++      G ++K   ++++
Sbjct: 171 SILINCFCH---LGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDK 227

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G + +  +   L     + G       ++  ++ R   P VV YN +I+   K   
Sbjct: 228 VVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKL 287

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +  +++ +M  RG+ P+ ITY +L+  +  AG +M   S+L ++   ++  D   +  
Sbjct: 288 VNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTI 347

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +I A  + G +++   L   M +    P+ +T++T++  Y  +G    A+ + + M+  +
Sbjct: 348 LIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTE 407

Query: 462 EN 463
            N
Sbjct: 408 VN 409



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 4/183 (2%)

Query: 73  YKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP 130
           +KN+ P  V     +D   K  +   AL +   L   +   A   T+T L+  L K +  
Sbjct: 440 HKNVVPNTVTYNSLIDGLCKSGRITSALDLMKEL-HHRGQPADVITYTSLLDGLCKNQNL 498

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  LF  M   G++P+   YTAL+    +   L  A      +  V  C  DVYTY++
Sbjct: 499 DKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHIL-VKGCCIDVYTYNV 557

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    K    D    + ++M   G    AVT+  II    +  + ++ E     M+  G
Sbjct: 558 MIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617

Query: 251 GCH 253
             H
Sbjct: 618 LLH 620


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 2/310 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G  P V  Y+ +++ Y   G L +    I +M+ +   KP++YTY+ +I    K  + D 
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQ-MKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            E++L EM   GI    V Y T+IDG+ K    +     F  M E     PD     ++I
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM-EKQRIVPDFIAYTAVI 122

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 G + + +K +N+    GV+ D  T   L   Y ++G  +K  S+ + M +    
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLT 182

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVTY  + +   K G ++   E   +M  +G++ N  TY SLV+   K+G I +   +
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++E + +  DT  F  ++ AY + G++ K  EL   M +R   P  ITF  ++  +  
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 444 LGMTEAAQNL 453
            GM E  + L
Sbjct: 303 SGMLEDGERL 312



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 141/290 (48%), Gaps = 3/290 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K    Q A K+F  + +Q+        +T ++  L +C +  +A  +F  M S G
Sbjct: 87  IDGFCKLGNIQAAYKLFDEMEKQRIVPDFI-AYTAVICGLCRCGKMMEADKVFNKMFSRG 145

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P    YT L+  Y +SG +++AFS  N M   S   P+V TY+ L     K  + D  
Sbjct: 146 VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ-SGLTPNVVTYTALADGLCKLGQVDTA 204

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L EM   G++ +  TYN++++G  K+    +       M E  G +PD  T  +++ 
Sbjct: 205 NELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM-EVAGMYPDTITFTTLMD 263

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           AY  +G + K  +   E    G++  + T N+L   +  +GM +    ++ +M ++   P
Sbjct: 264 AYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMP 323

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
              TYN +++ +    ++    E +K M  RG+ P+S TY  L+  + KA
Sbjct: 324 NTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKA 373



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 1/276 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV +YS +I           + K++ EM   G++ +  TYN+II    K+ K ++ E  
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M+  G   PD     ++I  +   GNI+   K ++E     +  D      +     
Sbjct: 68  LREMINQG-IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLC 126

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G   +   V + M  R   P  VTY  +I+ + K+G +EK      +M   G+ PN +
Sbjct: 127 RCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVV 186

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L     K G +   + +L ++    + L+   +N +++   ++G++ +  +L   M
Sbjct: 187 TYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM 246

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +     PD ITF T++ AY   G    A  L  +M+
Sbjct: 247 EVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREML 282



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 2/309 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T L+    K    + A  LF+ M    + P    YTA++    + G + EA    N M 
Sbjct: 83  YTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMF 142

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S    +PD  TY+ LI    K    +    +  +M   G+  + VTY  + DG  K  + 
Sbjct: 143 S-RGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQV 201

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +        M    G   +I T NS+++    SGNI +  K   E  + G+  D  T   
Sbjct: 202 DTANELLHEMC-GKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTT 260

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  +Y + G   K   ++  M  R   PTV+T+N+++  F  +G +E  E     M  +G
Sbjct: 261 LMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + PN+ TY SL+  Y     +     I + +    V+ D+  +N +I  + +A ++++  
Sbjct: 321 IMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAW 380

Query: 417 ELFLTMKER 425
            L   M E+
Sbjct: 381 FLHKEMAEK 389



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 101/209 (48%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD+ + +++I+ Y   G ++K+ K   E  + G+K ++ T N +     ++G  D  
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+  M  +   P  V Y  +I+ F K G+I+   + F +M+ + + P+ I Y +++  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G +M+ D +  ++ +  V  D   +  +I  Y ++G++EK   L   M +    P+
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIA 459
            +T+  +      LG  + A  L ++M  
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCG 213



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 35/141 (24%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+ R   P VV+Y+ VI  +   G ++K+ +  ++M+ +G+KPN  TY S++    K+G 
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           +   + +LR++ N  +                                   VPD + + T
Sbjct: 61  VDDAERVLREMINQGI-----------------------------------VPDTVVYTT 85

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +I  +  LG  +AA  L ++M
Sbjct: 86  LIDGFCKLGNIQAAYKLFDEM 106


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY ++
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERS 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++ + +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSR-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + ++G +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERSGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M      PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 118/301 (39%), Gaps = 38/301 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 181

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++ EM   GIE +++TY+TII  +GK  K +     F  +  S G   D     +MI AY
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL-RSSGVDIDQVLYQTMIVAY 299

Query: 267 GNSGNIEKMEKWYNEFNL-------------------------------MGVKADIQTLN 295
             SG +   ++  +E                                   G   DI    
Sbjct: 300 ERSGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   + +   Y  +  V D M    +FP      +V+  +GK    +K  + + +M+  
Sbjct: 360 RMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEV 419

Query: 356 G 356
           G
Sbjct: 420 G 420



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K     P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 4/334 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+         +QA +L   ML  G+ P    Y  +V A+ ++G L        +M
Sbjct: 247 TYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREM 306

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD   Y  L+++ T+         +L +M   G   +A TY  ++D YG+  +
Sbjct: 307 ADTGH-TPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGR 365

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+ +   F  M  +    PD  T N + S +G+ G  +++ + +++    G++ D++T  
Sbjct: 366 FDGVRELFREMRTA--VPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCE 423

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  + G+ G+++  R V+D++ K    PT   Y  ++E  G A   E+    F  M   
Sbjct: 424 GVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEI 483

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEK 414
           G  P   TY SL + ++K GL  + +SI  ++ NS  I  +   F+ +I AY Q   ++ 
Sbjct: 484 GSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDD 543

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
             + ++ M++    PD  +   ++ AY   G+ +
Sbjct: 544 AVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 577



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 173/377 (45%), Gaps = 14/377 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM--LSDGLKP 147
           ++  WQ ++++F  +++Q W +        ++ +LG+ + P       EV   L    + 
Sbjct: 109 RRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVFHDLPADSRT 167

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR----FDL 203
           ++  YT+L++AY ++ L +EA + ++ MK+     P   TY+ ++ +C +       FD+
Sbjct: 168 ALS-YTSLIAAYARNALHEEARALLDQMKAAG-VAPTAATYNTVLAACARATDPPVPFDM 225

Query: 204 IEKILAEMSY---LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           +  + AEM +     +     TYNT++         ++ E    AM+E+ G  PD  +  
Sbjct: 226 LLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEA-GVLPDTASYR 284

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            ++ A+  +G++ ++ + + E    G   D      L +++ R G   +  +V+  MQ  
Sbjct: 285 HIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQAD 344

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              PT  TY ++++ +G+ G  + + E F++M+   + P++ TY  L S +   G   +V
Sbjct: 345 GCAPTAATYRVLLDLYGRQGRFDGVRELFREMR-TAVPPDTATYNVLFSVFGDGGFFKEV 403

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   +  + +  D      ++ A GQ G  E   E+   + +   VP    +  +++A
Sbjct: 404 VELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEA 463

Query: 441 YNALGMTEAAQNLENKM 457
                M E A    N M
Sbjct: 464 LGHAAMYEEAYVAFNMM 480



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 137/315 (43%), Gaps = 11/315 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 100 FAAVYREFSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 158

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             L  +  +A++Y ++I  Y +    EE  +    M ++ G  P   T N++++A   + 
Sbjct: 159 HDLPADSRTALSYTSLIAAYARNALHEEARALLDQM-KAAGVAPTAATYNTVLAACARAT 217

Query: 271 N----IEKMEKWYNEFNL---MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     + +   + E        V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 218 DPPVPFDMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVL 277

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P   +Y  +++ F +AG + ++ E F++M   G  P+   Y  L+ A+++ G   +  ++
Sbjct: 278 PDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAV 337

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ++          +  ++  YG+ G  + + ELF  M+     PD  T+  +   +  
Sbjct: 338 LRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-AVPPDTATYNVLFSVFGD 396

Query: 444 LGMTEAAQNLENKMI 458
            G  +    L + M+
Sbjct: 397 GGFFKEVVELFHDML 411



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 13/227 (5%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL---NILTK 299
           F  M     C PD      +I   G  G    ++K    F+   + AD +T      L  
Sbjct: 120 FKYMQRQSWCRPDEHIHAIVIGVLGRQGP-ALLDKCLEVFH--DLPADSRTALSYTSLIA 176

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHR 355
           +Y R  ++++ R+++D M+     PT  TYN V+    +A       + +   F +M+H 
Sbjct: 177 AYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHD 236

Query: 356 ---GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
               ++P+  TY +L++A +   L  + + +LR +  + V+ DT  +  I+ A+ +AGD+
Sbjct: 237 VSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDL 296

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            ++ ELF  M +    PD   +  +++A+  +G T  A  +  +M A
Sbjct: 297 SRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQA 343



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 1/238 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L  + G     ++   LF  ML  G++P ++    ++ A GQ GL ++A   + D 
Sbjct: 386 TYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVL-DY 444

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     P    Y+ L+++      ++        M+ +G   +  TYN++ + + K   
Sbjct: 445 ITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGL 504

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E ES FS M  S G   +  + +++I AY     ++   K Y E        D ++L 
Sbjct: 505 FQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 564

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +  +Y  AG+ D+ +   + +Q     P+++ Y +++  + +        +  ++MK
Sbjct: 565 GVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMK 622



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 7/172 (4%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            + +T L+  LG     E+A + F +M   G  P+++ Y +L + + + GL  EA S  +
Sbjct: 454 AKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFS 513

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M + +  + +  ++  LI++  +  + D   K   EM          +   +++ Y  A
Sbjct: 514 RMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIA 573

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
              +E +  F   ++S    P I     M+S Y       + ++W + ++L+
Sbjct: 574 GVIDESKEQFEE-IQSNMAVPSIIAYCMMLSLYA------RNDRWADAYDLL 618


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 166/382 (43%), Gaps = 13/382 (3%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P++   D    +  W+L + +     + +  +    T+T L+  L      + A  LF  
Sbjct: 326 PIIALCDMGCYEDAWRLFVDM-----KNKGCEPNVYTYTALISGLCVSGILKVAIGLFHR 380

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  DG+ P+   Y AL++   ++  +  AF  +N M   + C P++ TY+ +IK      
Sbjct: 381 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-NGCSPNIVTYNEMIKGYCILG 439

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                  ++  M   G   + VTYNTII GY  +            M   GGC PD ++ 
Sbjct: 440 DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM-RDGGCKPDEWSY 498

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             +I  +     I KME  +  FN M   G+  +  T   L   Y +    D   S+++ 
Sbjct: 499 TELICGFCK---ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 555

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P V TYN++I    K  +    EE  K M   G+ PN +TY +++    K G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                 +  ++     + +   ++ +I A GQ G VE+   LF  ++    +PD IT+  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           MI+AY   G  E A N   +MI
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMI 697



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 156/380 (41%), Gaps = 37/380 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            TFT   ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I
Sbjct: 249 DTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLI 308

Query: 173 N----------------------DMKSVSD------------CKPDVYTYSILIKSCTKF 198
                                  DM    D            C+P+VYTY+ LI      
Sbjct: 309 REMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
               +   +   MS  G+  + VTYN +I+   + ++ +      + M  +G C P+I T
Sbjct: 369 GILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-CSPNIVT 427

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N MI  Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+
Sbjct: 428 YNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR 487

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P   +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   + 
Sbjct: 488 DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLD 547

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
              S+L  ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI
Sbjct: 548 TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607

Query: 439 QAYNALGMTEAAQNLENKMI 458
                 G T  A  + NKMI
Sbjct: 608 DGLCKNGSTSLALEMFNKMI 627



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 159/351 (45%), Gaps = 18/351 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            ++ L++ L +          +  MLS+G++P++ +Y A+++A  + G + +A  TI  M
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--M 238

Query: 176 KSV--SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           K V  S+  PD +TY+ +I    + H  D   ++  +M+  G E + VTY+T+I+G   +
Sbjct: 239 KKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +  E       M+   G  P   T    I A  + G  E   + + +    G + ++ T
Sbjct: 299 GRVNEAFDLIREMILH-GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYT 357

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L      +G+      +   M +   FP  VTYN +I    +   I+        M 
Sbjct: 358 YTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG 417

Query: 354 HRGMKPNSITYCSLVSAYS------KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             G  PN +TY  ++  Y       KA L+M  +++L++  +++++     +N II  Y 
Sbjct: 418 RNGCSPNIVTYNEMIKGYCILGDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYC 471

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +G+      +   M++  C PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 472 DSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 224

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 225 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 283

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 284 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 343

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             MK++G +PN  TY +L+S    +G++     +  ++    V  +T  +N +I+   + 
Sbjct: 344 VDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ++    +   M    C P+ +T+  MI+ Y  LG  + A  + N M+
Sbjct: 404 RRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 127/313 (40%), Gaps = 27/313 (8%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K     LAL++F  + +Q        T++ L+  LG+  + E+A  LF  +   G
Sbjct: 607 IDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK----------- 193
           L P    Y  ++ AY  SG ++ AF+ +  M   + C+P ++TY +LIK           
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQPTLWTYGVLIKGLKNEYLLADQ 724

Query: 194 ----------SCTKFHRF---DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
                     +C+  ++    D +  + A+++ L    S    N ++     A ++ E  
Sbjct: 725 RLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEAN 784

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
               +M+  G C PD    NS++ +     N++     +   +  G +  +     L  +
Sbjct: 785 ELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICA 843

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +     + R   + M  R + P  V   ++I+   + G+ +   E+   M+ R   P+
Sbjct: 844 LCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903

Query: 361 SITYCSLVSAYSK 373
              Y  L    SK
Sbjct: 904 FHIYTILAREASK 916



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 166 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM 381



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 149 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 164/343 (47%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  +++ M+ DG+ PSV  Y+ L+ ++G+   +D     +N+M
Sbjct: 180 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEM 239

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    KP+VY+Y+I I+   +  RFD   +IL +M   G +   VT+  +I     A +
Sbjct: 240 EA-RGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGR 298

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M  S    PD  T  +++   G+SG+ + + + +N     G   +I +  
Sbjct: 299 LSDAKDVFWKMKASDQ-KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYT 357

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  + G  D+  +V D M+++   P   +YN +I  F KA   ++  E F  M   
Sbjct: 358 AVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNAC 417

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN  T+   ++ Y K+G  +K       +++  ++ D    N ++S+  ++G +   
Sbjct: 418 GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMA 477

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  +K+    PD IT+  MI+  +     + A N  + M+
Sbjct: 478 KRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMV 520



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 166/347 (47%), Gaps = 2/347 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV  GK +  +    L   M + G+KP+V  YT  +   GQ+   DEA+  +  
Sbjct: 214 RTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGK 273

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+  S CKPDV T++++I+      R    + +  +M     +   VTY T++D  G + 
Sbjct: 274 MED-SGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSG 332

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             + +   ++AMV + G + +I +  +++ A    G +++    ++E    G+  +  + 
Sbjct: 333 DSQSVMEIWNAMV-ADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSY 391

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   + +A M+D+   + + M      P   T+ + I  +GK+G   K  + ++ MK 
Sbjct: 392 NSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKS 451

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+ P+     +++S+ +++G +     +  ++++  V  DT  +  +I    +A   ++
Sbjct: 452 KGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADE 511

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
               F  M E  CVPD +   ++I      G    A  L +++  MK
Sbjct: 512 AMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMK 558



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 120  LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
            L+  L K K+  +A  LF      G+      Y +L+       L+D A     +MK + 
Sbjct: 744  LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 803

Query: 180  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE- 238
             C PD +TY++++ +  K  R + + ++ AEM   G E + VTYNTII G  K+K+ E+ 
Sbjct: 804  -CGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQA 862

Query: 239  MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            ++  ++ M E  G  P   T   ++     +G +   E  +NE    G K +    NIL 
Sbjct: 863  IDLYYNLMSE--GFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILL 920

Query: 299  KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              +  AG  + +  + + M ++   P + +Y ++I+T   AG +     YF+++   G++
Sbjct: 921  NGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLE 980

Query: 359  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            P+ I Y  L+    K+  I +   +  +++   ++ +   +N +I   G+AG   +  ++
Sbjct: 981  PDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQM 1040

Query: 419  FLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  +  +   P+  T+  +I+ Y+  G T+ A
Sbjct: 1041 YEELLIKGWKPNVFTYNALIRGYSVSGSTDNA 1072



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 89   IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
            +K K+ + A+ ++  L  + +    C T+  L+  L K  +   A  LF  ML  G KP+
Sbjct: 854  VKSKRLEQAIDLYYNLMSEGFSPTPC-TYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPN 912

Query: 149  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              +Y  L++ +  +G  +        M       PD+ +Y++LI +     R +      
Sbjct: 913  CTIYNILLNGHRIAGNTENVCQIFEKMVE-QGINPDIKSYTVLIDTLCTAGRLNDGLSYF 971

Query: 209  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             ++  LG+E   + YN +IDG GK+++ EE    F+ M +  G  P+++T NS+I   G 
Sbjct: 972  RQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEM-KKKGIVPNLYTYNSLILHLGK 1030

Query: 269  SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            +G   +  + Y E  + G K ++ T N L + Y  +G  D   +  D +       T + 
Sbjct: 1031 AGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALI 1090

Query: 329  YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
              +V E       I   E  F +MK RG  P+  TY  ++ A  K+   M+++ +L+  E
Sbjct: 1091 SGLVDENL-----INIAEGLFAEMKRRGCGPDQFTYNLILDAIGKS---MRIEEMLKVQE 1142



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 167/385 (43%), Gaps = 42/385 (10%)

Query: 121 MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + +L KC     +  + E+   M++DG   ++  YTA+V A  Q G LDEA +  ++MK 
Sbjct: 322 ITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKE 381

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                P+ Y+Y+ LI    K   FD   ++   M+  G   +  T+   I+ YGK+ +  
Sbjct: 382 -KGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSL 440

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +    +  M +S G  PD+   N+++S+   SG +   ++ + E   MGV  D  T  ++
Sbjct: 441 KAIQRYEHM-KSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMM 499

Query: 298 TKSYGRAGMYDK-------------------MRSVMDFMQK--------RFFF------- 323
            K   +A   D+                   + S++D + K        + F        
Sbjct: 500 IKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKI 559

Query: 324 -PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            PT  TYN ++   G+ G ++++    ++M H    PN ITY +++   SK G +     
Sbjct: 560 EPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIG 619

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L  +       D   +N ++    +    E+   +F  MK +   PD  T  T++ ++ 
Sbjct: 620 MLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMK-KILAPDYATLCTILPSFV 678

Query: 443 ALG-MTEAAQNLENKMIAMKENSGK 466
             G M EA   ++  ++    N+ K
Sbjct: 679 KNGLMKEALHTVKEYILKADCNTDK 703



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 72/385 (18%)

Query: 145  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY---------------S 189
            L P       ++ ++ ++GL+ EA  T+ +    +DC  D  ++               S
Sbjct: 663  LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKS 722

Query: 190  I--------------------LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
            I                    LI+   K  +     ++  +   LG+     +YN++I G
Sbjct: 723  IEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRG 782

Query: 230  YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                   +  E  F+ M +  GC PD FT N ++ A G S  IE+M +   E +  G ++
Sbjct: 783  LVDENLIDIAEDLFTEM-KRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYES 841

Query: 290  DIQTLNILTK----------------------------SYG-------RAGMYDKMRSVM 314
               T N +                              +YG       +AG      ++ 
Sbjct: 842  TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLF 901

Query: 315  DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
            + M +    P    YNI++     AG+ E + + F+KM  +G+ P+  +Y  L+     A
Sbjct: 902  NEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTA 961

Query: 375  GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
            G +    S  RQ+    +  D   +N +I   G++  +E+   LF  MK++  VP+  T+
Sbjct: 962  GRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTY 1021

Query: 435  ATMIQAYNALG-MTEAAQNLENKMI 458
             ++I      G  +EAAQ  E  +I
Sbjct: 1022 NSLILHLGKAGKASEAAQMYEELLI 1046



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 116/258 (44%), Gaps = 10/258 (3%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           FDL++K +       ++ +  T+ T+  G G          +   M E+G    + +T N
Sbjct: 131 FDLMQKQI-------VKANVGTFATVFSGVGVQGGLRSAPVALPVMREAG-MSLNGYTYN 182

Query: 261 SMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            +I     SG + E ME  Y      G+   ++T ++L  S+G+    D +  +++ M+ 
Sbjct: 183 GLIYFLVKSGFDAEAME-VYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEA 241

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R   P V +Y I I   G+A   ++  +   KM+  G KP+ +T+  ++     AG +  
Sbjct: 242 RGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSD 301

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +  +++ SD   D   +  ++   G +GD + + E++  M       + +++  ++ 
Sbjct: 302 AKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVD 361

Query: 440 AYNALGMTEAAQNLENKM 457
           A   +G  + A  + ++M
Sbjct: 362 ALCQVGRLDEALAVFDEM 379



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/409 (18%), Positives = 158/409 (38%), Gaps = 38/409 (9%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  K   A K+F  L++ +  +    T+  L+  LG+  + ++   L E M    
Sbjct: 535 IDTLYKGGKGNEAWKLFHQLKEMK-IEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSI 593

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P++  Y  ++    ++G ++ A   +  M     C PD+ +Y+ ++    K  RF+  
Sbjct: 594 HPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTE-KGCTPDLSSYNTVMYGLIKEERFEEA 652

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++  +M  + +     T  TI+  + K    +E   +    +    C+ D  + +S++ 
Sbjct: 653 FRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLME 711

Query: 265 AYGNSGNIEK-----------------------------------MEKWYNEFNLMGVKA 289
              N   +EK                                     + +N+F  +GV  
Sbjct: 712 GILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSL 771

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
              + N L +      + D    +   M++    P   TYN++++  GK+  IE+M    
Sbjct: 772 KTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQ 831

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M  +G +   +TY +++S   K+  + +   +   + +         +  ++    +A
Sbjct: 832 AEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKA 891

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           G +     LF  M E  C P+   +  ++  +   G TE    +  KM+
Sbjct: 892 GKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMV 940



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 117  FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            +  L+  LGK ++ E+A  LF  M   G+ P++  Y +L+   G++G   EA     ++ 
Sbjct: 986  YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN---TIIDGYGKA 233
             +   KP+V+TY+ LI+  +     D         +Y   +C AV  +    +I G    
Sbjct: 1046 -IKGWKPNVFTYNALIRGYSVSGSTD--------NAYAAYDCVAVGVSLKTALISGLVDE 1096

Query: 234  KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
                  E  F+ M +  GC PD FT N ++ A G S  IE+M K   E 
Sbjct: 1097 NLINIAEGLFAEM-KRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEI 1144



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 7/171 (4%)

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L +++GR G    M  V D MQK+     V T+  V    G  G +         M+  G
Sbjct: 117 LMRAHGRVG---DMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAG 173

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           M  N  TY  L+    K+G   +   + + +    +      ++ ++ ++G+  DV+ + 
Sbjct: 174 MSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVL 233

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467
            L   M+ R   P+  ++   I+        + A  +  KM    E+SG K
Sbjct: 234 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKM----EDSGCK 280


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 176/382 (46%), Gaps = 10/382 (2%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           K + A+++     Q++ Y       T  +++   CK+    QA  L + M   G KP V 
Sbjct: 227 KLKEAMEVLDRQMQRECYP---DVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVV 283

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L++   + G LDEA   +N M S   C+P+V T++I+++S     R+   EK LAE
Sbjct: 284 TYNVLINGICKEGRLDEAIRFLNHMPSYG-CQPNVITHNIILRSMCSTGRWMDAEKFLAE 342

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S VT+N +I+   +             M + G C P+  + N ++ A     
Sbjct: 343 MIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG-CTPNSLSYNPLLHALCKDK 401

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E+  ++ +     G   DI T N L  +  + G  D    +++ +  +   P ++TYN
Sbjct: 402 KMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYN 461

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            VI+   K G  +   +   +MK +G+KP+ ITY +LV   S+ G + +  +    +E  
Sbjct: 462 TVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEM 521

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V  +   +N I+    +A    +  +    M  R C P   ++  +I+     G+ + A
Sbjct: 522 GVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEA 581

Query: 451 QNLENKMIA---MKENSGKKLI 469
             L N++ +   +K++S ++++
Sbjct: 582 LELLNELCSRGVVKKSSAEQVV 603



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 156/364 (42%), Gaps = 32/364 (8%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           T L+  L K  +  +A+ + E++   G  P V  Y  L+S Y ++G +  A   ++ M  
Sbjct: 149 TSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSV 208

Query: 178 VSD-------------------------------CKPDVYTYSILIKSCTKFHRFDLIEK 206
             D                               C PDV TY+ILI++  K        K
Sbjct: 209 SPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMK 268

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L EM   G +   VTYN +I+G  K  + +E     + M  S GC P++ T N ++ + 
Sbjct: 269 LLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM-PSYGCQPNVITHNIILRSM 327

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
            ++G     EK+  E    G    + T NIL     R G+  +   V++ M +    P  
Sbjct: 328 CSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNS 387

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           ++YN ++    K   +E+  EY   M  RG  P+ +TY +L++A  K G +     IL Q
Sbjct: 388 LSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 447

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +         +N +I    + G  +   +L   MK +   PD IT++T++   +  G 
Sbjct: 448 LGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGK 507

Query: 447 TEAA 450
            + A
Sbjct: 508 VDEA 511



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 145/327 (44%), Gaps = 5/327 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+     E M+  G  P +   T+L+    ++G   +A   +  ++  S   PDV TY++
Sbjct: 127 EEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED-SGAVPDVITYNV 185

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K        ++L  MS   +    VTYNTI+     + K +E        ++  
Sbjct: 186 LISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE 242

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C+PD+ T   +I A      + +  K  +E    G K D+ T N+L     + G  D+ 
Sbjct: 243 -CYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEA 301

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
              ++ M      P V+T+NI++ +    G     E++  +M  +G  P+ +T+  L++ 
Sbjct: 302 IRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINF 361

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + GLI +   +L ++       ++  +N ++ A  +   +E+  E    M  R C PD
Sbjct: 362 LCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPD 421

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            +T+ T++ A    G  + A  + N++
Sbjct: 422 IVTYNTLLTALCKDGKVDVAVEILNQL 448



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PDI    S+I     +G   K  +        G   D+ T N+L   Y + G   ++ S 
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTG---EIGSA 199

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +  + +    P VVTYN ++ T   +G +++  E   +   R   P+ ITY  L+ A  K
Sbjct: 200 LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
              + +   +L ++ +     D   +N +I+   + G +++       M    C P+ IT
Sbjct: 260 ESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT 319

Query: 434 FATMIQAYNALGMTEAAQNLENKMI 458
              ++++  + G    A+    +MI
Sbjct: 320 HNIILRSMCSTGRWMDAEKFLAEMI 344



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 3/198 (1%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+ +     +G +E+  K+  +    G   DI     L +   + G   K   VM+ ++ 
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED 173

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P V+TYN++I  + K G I    +   +M    + P+ +TY +++     +G + +
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKE 230

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +L +    +   D   +  +I A  +   V +  +L   M+++ C PD +T+  +I 
Sbjct: 231 AMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLIN 290

Query: 440 AYNALGMTEAAQNLENKM 457
                G  + A    N M
Sbjct: 291 GICKEGRLDEAIRFLNHM 308


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 165/349 (47%), Gaps = 7/349 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM    + ++P     LF   L  GLK  V V + L+     +   D+  + +   
Sbjct: 121 TYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHR 180

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                 +PD  +Y+ ++K+  +  R     DL+  ++ +    G   + VTYNT+I G  
Sbjct: 181 MPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSG--GCSPNVVTYNTVIHGLF 238

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +  +  +  + F  M++ G   PD+ T  S+I A   +  ++K E    +    G + + 
Sbjct: 239 REGEVSKACNLFHEMMQQG-VVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNK 297

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N +   Y  +G + +   +   M  +   P +VT N  + +  K G  ++  E+F  
Sbjct: 298 VTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDS 357

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M  +G KPN +TY  L+  Y+  G  + + ++   +E + ++ D   FN +I AYG+ G 
Sbjct: 358 MAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGM 417

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +++   +F  M+E+  +PD  T+  +I A++ +G    A +  N+MIAM
Sbjct: 418 MDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAM 466



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 44/371 (11%)

Query: 129 QPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           + ++A  L   M+  S G  P+V  Y  ++    + G + +A +  ++M       PDV 
Sbjct: 205 RSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQ-QGVVPDVV 263

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY+ +I +  K    D  E +L +M   G + + VTYN +I GY  + +++E    F  M
Sbjct: 264 TYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREM 323

Query: 247 VESG----------------------------------GCHPDIFTLNSMISAYGNSGNI 272
              G                                  G  P++ T + ++  Y   G  
Sbjct: 324 TSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCF 383

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
             M   +N     G+ AD +  NI+  +YG+ GM D+   +   MQ++   P   TY IV
Sbjct: 384 VDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIV 443

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I  F + G +    + F +M   G+KP  I Y SL+  +   G ++K   ++ ++ +  +
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGI 503

Query: 393 IL-DTPFFNCIISAYGQAGDVEKMGELF---LTMKERHCVPDNITFATMIQAYNALGMTE 448
              +  FFN II++  + G V +  ++F   + + ER   PD ITF ++I  Y  +G  E
Sbjct: 504 PRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGER---PDVITFNSLIDGYGLVGKIE 560

Query: 449 AAQNLENKMIA 459
            A  + + MI+
Sbjct: 561 KAFGVLDAMIS 571



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 159/366 (43%), Gaps = 42/366 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M  +G+     V+  ++ AYG+ G++DE       M+      PD  TY I+I + 
Sbjct: 389 LFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQE-QGVIPDACTYGIVIAAF 447

Query: 196 TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           ++  R  D ++K   +M  +G++   + Y+++I G+       + +   S M+  G   P
Sbjct: 448 SRMGRLADAMDK-FNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRP 506

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           +I   NS+I++    G + +    ++    +G + D+ T N L   YG  G  +K   V+
Sbjct: 507 NIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVL 566

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 371
           D M      P VV+YN +I+ + + G I+     F +M  +G+KP +ITY  ++      
Sbjct: 567 DAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFND 626

Query: 372 ----------------------SKAGLIM----------KVDSILRQVENSDVILDTPFF 399
                                 S  G+I+          +  ++ +++   +V  +    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAII 686

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I A  +    E+  ELF ++     VP+  T+  MI+     G  E A N    M +
Sbjct: 687 NTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADN----MFS 742

Query: 460 MKENSG 465
           + E SG
Sbjct: 743 LMEKSG 748



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 131/286 (45%), Gaps = 4/286 (1%)

Query: 127 CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+    +A  +F+ ++  G +P V  + +L+  YG  G +++AF  ++ M S +  +PD
Sbjct: 519 CKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMIS-AGIEPD 577

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V +Y+ LI    +  R D    +  EM   G++ + +TY  I+ G     +    +    
Sbjct: 578 VVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+ESG    DI T   ++     +   ++    + +   M VK +I  +N +  +  + 
Sbjct: 638 EMIESGTTM-DISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKV 696

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
              ++ + + D +      P   TY ++I+   K G +E+ +  F  M+  G  P+S   
Sbjct: 697 RKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLL 756

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
             ++    + G I+K  + + +V+   + L+    + +++ + + G
Sbjct: 757 NYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSREG 802



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 112/260 (43%), Gaps = 2/260 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+   G   + E+A  + + M+S G++P V  Y  L+  Y ++G +D+      +M
Sbjct: 545 TFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEM 604

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP   TY I++       R    +K+  EM   G      T   I+ G  +   
Sbjct: 605 LS-KGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNC 663

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  + F  +  +     +I  +N+MI A       E+ ++ ++  +  G+  +  T  
Sbjct: 664 DDEAIAMFKKL-GAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYG 722

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K+  + G  ++  ++   M+K    P+    N +I    + G I K   Y  K+  +
Sbjct: 723 VMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGK 782

Query: 356 GMKPNSITYCSLVSAYSKAG 375
            +   + T   L++ +S+ G
Sbjct: 783 RISLEASTVSLLMALFSREG 802



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 38/180 (21%)

Query: 318 QKRFFFPTVVTYNIVIET----------------FGKAG----------------HIEKM 345
           + R   PTV TYNI+++                 F K G                H ++ 
Sbjct: 111 RPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRS 170

Query: 346 EEYFKKMKHR----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFF 399
           ++    + HR    G++P++I+Y ++V    +     +   +L  +  ++     +   +
Sbjct: 171 DDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTY 230

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I    + G+V K   LF  M ++  VPD +T+ ++I A       + A+ +  +MI+
Sbjct: 231 NTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMIS 290


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 166/382 (43%), Gaps = 13/382 (3%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P++   D    +  W+L + +     + +  +    T+T L+  L      + A  LF  
Sbjct: 326 PIIALCDMGCYEDAWRLFVDM-----KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 380

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  DG+ P+   Y AL++   ++  +  AF  +N M   + C P++ TY+ +IK      
Sbjct: 381 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-NGCSPNIVTYNEMIKGYCILG 439

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                  ++  M   G   + VTYNTII GY  +            M   GGC PD ++ 
Sbjct: 440 DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM-RDGGCKPDEWSY 498

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             +I  +     I KME  +  FN M   G+  +  T   L   Y +    D   S+++ 
Sbjct: 499 TELICGFCK---ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 555

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P V TYN++I    K  +    EE  K M   G+ PN +TY +++    K G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                 +  ++     + +   ++ +I A GQ G VE+   LF  ++    +PD IT+  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           MI+AY   G  E A N   +MI
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMI 697



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 156/379 (41%), Gaps = 37/379 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           TFT   ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I 
Sbjct: 250 TFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309

Query: 174 ----------------------DMKSVSD------------CKPDVYTYSILIKSCTKFH 199
                                 DM    D            C+P+VYTY+ LI       
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSG 369

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              +   +   MS  G+  + VTYN +I+   + ++ +      + M  +G C P+I T 
Sbjct: 370 LLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-CSPNIVTY 428

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N MI  Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+ 
Sbjct: 429 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 488

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P   +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   +  
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 548

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             S+L  ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI 
Sbjct: 549 ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 608

Query: 440 AYNALGMTEAAQNLENKMI 458
                G T  A  + NKMI
Sbjct: 609 GLCKNGSTSLALEMFNKMI 627



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 159/350 (45%), Gaps = 18/350 (5%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L++ L +          +  MLS+G++P++ +Y A+++A  + G + +A  TI  MK
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--MK 239

Query: 177 SV--SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            V  S+  PD +TY+ +I    + H  D   ++  +M+  G E + VTY+T+I+G   + 
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E       M+   G  P   T    I A  + G  E   + + +    G + ++ T 
Sbjct: 300 RVNEAFDLIREMILH-GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L      +G+      +   M +   FP  VTYN +I    +   I+        M  
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR 418

Query: 355 RGMKPNSITYCSLVSAYS------KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            G  PN +TY  ++  Y       KA L+M  +++L++  +++++     +N II  Y  
Sbjct: 419 NGCSPNIVTYNEMIKGYCILGDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYCD 472

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +G+      +   M++  C PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 224

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 225 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 283

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 284 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 343

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             MK++G +PN  TY +L+S    +GL+     +  ++    V  +T  +N +I+   + 
Sbjct: 344 VDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ++    +   M    C P+ +T+  MI+ Y  LG  + A  + N M+
Sbjct: 404 RRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 132/327 (40%), Gaps = 34/327 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K     LAL++F  + +Q        T++ L+  LG+  + E+A  LF  +   G
Sbjct: 607 IDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK----------- 193
           L P    Y  ++ AY  SG ++ AF+ +  M   + C+P ++TY +LIK           
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQPTLWTYGVLIKGLKNEYLLADQ 724

Query: 194 ----------SCTKFHRF---DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
                     +C+  ++    D +  + A+++ L    S    N ++     A ++ E  
Sbjct: 725 RLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEAN 784

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
               +M+  G C PD    NS++ +     N++     +   +  G +  +     L  +
Sbjct: 785 ELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICA 843

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +     + R   + M  R + P  V   ++I+   + G+ +   E+   M+ R   P+
Sbjct: 844 LCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903

Query: 361 SITYCSLVSAYSK-------AGLIMKV 380
              Y  L    SK       AG I KV
Sbjct: 904 FHIYTILAREASKKRSWKHVAGCITKV 930



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 166 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 149 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 183/429 (42%), Gaps = 48/429 (11%)

Query: 78  PKPVLEALDEAIKQ------KKWQLALKIFGLLRQQQWY-QARCQTFTKLMVMLGKCKQP 130
           P+  L+     +KQ      KK  L   +   L   + Y  ARC T   +  +L  C   
Sbjct: 40  PEQALDTFTSVLKQNPNNPTKKLHLYSAVIHYLTGAKVYPTARCLTKDLIQTLLQSCTPR 99

Query: 131 EQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFST---INDMKSVSDCK---- 182
              SL+F  +    G K +  V+  L+ A+ + GL+DEA      +    +V  C     
Sbjct: 100 RVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQACNALLN 159

Query: 183 ------------------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
                                   P V TY++L+ +C +       + +++EM   GIE 
Sbjct: 160 GLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEP 219

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + V Y T+I G     K  E ES F  M +S G  P+++T N ++  Y  + N+++    
Sbjct: 220 TVVIYTTLIHGLCSESKLMEAESMFRQMKDS-GVFPNLYTYNVLMDGYCKTANVKQALHL 278

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y      G++ ++ T  IL  +  +       R     M K    P VV +N +I+ + K
Sbjct: 279 YQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSK 338

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           AG+  +  +   +M+   + P+  TY  L+    + G + + D IL+++E   V  ++  
Sbjct: 339 AGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVV 398

Query: 399 FNCIISAYGQAGDVEKMGELFLT------MKERHCVPDNITFATMIQAY-NALGMTEAAQ 451
           +N +I  Y + G++EK  E+F        M+     PD + +A M+Q + NA  M +   
Sbjct: 399 YNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMM 458

Query: 452 NLENKMIAM 460
            L   MI M
Sbjct: 459 -LHADMIKM 466



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 43/231 (18%)

Query: 117 FTKLMVMLGKCKQP--EQASLLFEVMLSDGLK---------------------------- 146
           +T  ++M G CK    +QA  L++ ML DGL+                            
Sbjct: 257 YTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQ 316

Query: 147 -------PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
                  P+V V+ +L+  Y ++G   EA   + +M+      PDV+TYSILIK+  +  
Sbjct: 317 MAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFK-ISPDVFTYSILIKNACRLG 375

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-----VESGGCHP 254
             +  + IL  M   G+  ++V YN++IDGY K    E+    F A      +   G  P
Sbjct: 376 TVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRP 435

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           D      M+  + N+ ++  +   + +   MG+  +  T  ++ + Y   G
Sbjct: 436 DALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNG 486


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 163/338 (48%), Gaps = 3/338 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F +L++ L +  + + AS  F+ M   G +P+V VY  L+     SG L++A +   +MK
Sbjct: 153 FYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK 212

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S S C PDV TY+ L+ +  K  R +   K+   M   G   + +T++T+I G  +  + 
Sbjct: 213 SHS-CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL 271

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+    F +M+E+G C P+ +T  ++IS    +  + +  + + +     +  D    N 
Sbjct: 272 EKALEVFGSMLEAG-CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           L   Y + G  D+   +   M       PT+VT+N +I+ F K G + +  E   +M  +
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  +S TY  L++  S+A  + +   + +Q+     +LD       +    + G++++ 
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +F   ++   VP+  TF  + ++   LG  E AQ L
Sbjct: 451 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 488



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K  +PE++  + E M++ G  P V  +  ++  + +S  +++A      M
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S  KPD  +Y ILI    K  + D   KIL+EM   G   S   Y++++    KA++
Sbjct: 72  VE-SGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARR 130

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +   S F  M+  GG HPD      +I     +G ++   + + +    G + ++   N
Sbjct: 131 VDHASSLFDEMIR-GGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L      +G  ++  ++   M+     P VVTYN +++   KA  +E+  + F+ M+  
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN IT+ +L+    + G + K   +   +  +    +   +  +IS   +A  V + 
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ELF  M +    PD + + ++I  Y   G  + A+ L  +M
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 1/277 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  + K ++ E+   LFE M + G  P+V  ++ L+    ++G L++A      M
Sbjct: 222 TYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM 281

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + CKP+ YTY+ LI    +  +     ++  +M+   I   AV YN++I GY K   
Sbjct: 282 LE-AGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGS 340

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E E  +  M    G  P I T N++I  +   G + +  +   E    G+ AD  T  
Sbjct: 341 MDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYR 400

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     RA   D+   V   M+++ F    V+    +    K G+I++    F+  +  
Sbjct: 401 ILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKS 460

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           G  PN  T+  L  +  K G +     ++   +  D+
Sbjct: 461 GAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 497



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V+TYS +IKS  K  + +   K+L EM   G       +N ++ G+ ++   E+    +
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             MVESG   PD  + + +I      G +++  K  +E  + G    +Q  + L ++  +
Sbjct: 69  QHMVESG-YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK 127

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           A   D   S+ D M +    P  + +  +I    +AG ++   E FK+M   G +PN   
Sbjct: 128 ARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPV 187

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  L+     +G + + +++  ++++     D   +N ++ A  +A  VE+  +LF  M+
Sbjct: 188 YNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMR 247

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
               VP+ ITF+T+I      G  E A  +   M+
Sbjct: 248 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 1/225 (0%)

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           I  +  TY++II    K  K EE       M+ + GC+PD+F  N ++  +  S N+EK 
Sbjct: 6   IAANVFTYSSIIKSLVKEAKPEESYKVLEEMM-AAGCNPDVFAFNGVMQGFARSNNMEKA 64

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + Y      G K D  + +IL     + G  D+   ++  M  R   P++  Y+ ++  
Sbjct: 65  REVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRA 124

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             KA  ++     F +M   G  P+ + +  L+    +AG +       +Q+       +
Sbjct: 125 LAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPN 184

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            P +N ++     +G +E+   LF  MK   C PD +T+ T++ A
Sbjct: 185 VPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDA 229



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 9/327 (2%)

Query: 105 RQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           R +Q  +  CQ     +  L+  L    Q EQA+ LF  M S    P V  Y  L+ A  
Sbjct: 172 RFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVC 231

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++  ++E       M++     P+V T+S LI    +    +   ++   M   G + + 
Sbjct: 232 KARRVEEGCKLFEAMRAAGYV-PNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNK 290

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWY 279
            TY T+I G  +A+K  +    F  M ++  C  PD    NS+I+ Y   G++++ EK Y
Sbjct: 291 YTYTTLISGLCRAEKVIQARELFEKMTQA--CIPPDAVAYNSLIAGYCKRGSMDEAEKLY 348

Query: 280 NEFN-LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
            E +   G++  I T N L   + + G   +   ++  M  +       TY I+I    +
Sbjct: 349 REMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSR 408

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           A  +++  E +K+M+ +    + ++  S V    K G I +  ++      S  + +   
Sbjct: 409 ATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPET 468

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKER 425
           F  +  +  + G VE   +L    K R
Sbjct: 469 FRILSESLIKLGRVEDAQKLMEPAKAR 495



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/107 (19%), Positives = 52/107 (48%)

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ + +  N  TY S++ +  K     +   +L ++  +    D   FN ++  + ++ +
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +EK  E++  M E    PDN+++  +I     +G  + +  + ++M+
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMV 107


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 166/376 (44%), Gaps = 44/376 (11%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   L+ Q W+      F  L+   GK      A ++   M  +G  P+V  
Sbjct: 94  KKWDLVSEILEWLQSQHWWDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVS 153

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE------ 205
           +TAL+ AYG+ G  + A +    M++ S  +P   TY I++K+  + ++F   E      
Sbjct: 154 HTALMEAYGRGGRYNNAEAIFRRMQT-SGPEPSALTYQIILKTFVEGNKFKEAEEVFETL 212

Query: 206 --------------------------------KILAEMSYLGIECSAVTYNTIIDGYGKA 233
                                           K+ A M+  G+  S VTYN+++      
Sbjct: 213 LNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSF---E 269

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             ++E+   +  M  S G  PD+ +   +I AYG +   E+    + E    GV+   + 
Sbjct: 270 TNYKEVSKIYDQMQRS-GLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKA 328

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            NIL  ++  +GM ++ R V   M++    P + +Y  ++  +  A  +E  E +FK+++
Sbjct: 329 YNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLR 388

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KPN +TY +L+  ++K   + K+  I  +++ + +  +      I+ AYG+  D  
Sbjct: 389 QDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNKDFG 448

Query: 414 KMGELFLTMKERHCVP 429
                +  M E H VP
Sbjct: 449 SAVIWYKEM-EHHGVP 463



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 101/262 (38%), Gaps = 70/262 (26%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+AYG  G+    E      N  G   ++ +   L ++YGR G Y+   ++   MQ   
Sbjct: 122 LITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSG 181

Query: 322 FFPTVVTYNIVIETF--------------------------------------GKAGHIE 343
             P+ +TY I+++TF                                       KAG+ E
Sbjct: 182 PEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYE 241

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVS--------------------------------AY 371
           K  + F  M  RG+  +++TY SL+S                                AY
Sbjct: 242 KARKVFALMAERGVPQSTVTYNSLMSFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAY 301

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            +A    +  ++  ++ ++ V      +N ++ A+  +G VE+   +F +M+   C PD 
Sbjct: 302 GRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDL 361

Query: 432 ITFATMIQAYNALGMTEAAQNL 453
            ++ TM+ AY      E A+N 
Sbjct: 362 CSYTTMLSAYVNASDMEGAENF 383



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L  +YG+ G ++    V+  M    + P VV++  ++E +G+ G     E  F++M+  
Sbjct: 121 MLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTS 180

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV---ENSDVILDTPFFNCIISAYGQAGDV 412
           G +P+++TY  ++  + +     + + +   +   ENS +  D   F+ +I    +AG+ 
Sbjct: 181 GPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNY 240

Query: 413 EKMGELFLTMKERHCVPDNITFATMI 438
           EK  ++F  M ER      +T+ +++
Sbjct: 241 EKARKVFALMAERGVPQSTVTYNSLM 266


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 155/349 (44%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M 
Sbjct: 162 LSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMS 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C PD  TYS LI +  K  R D   ++L EM   G++ +A  Y  II       + 
Sbjct: 222 NEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNV 281

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G I++   +Y+E      K 
Sbjct: 282 HGALSLFEEMRYMY--------CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKP 333

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    + + M      P VVTYN +I+  F     + ++  +
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+  TY  L+  + K   I K   +L +++          +  +I A G+
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE         +A MI+     G  + A NL ++M
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEM 502



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 3/351 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T ++ +  K      A  LFE M     +P V  YT L+   G++G +DEA+ 
Sbjct: 262 QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
             ++M+   DCKPD    + +I    K  R D   K+  EM       + VTYNTII   
Sbjct: 322 FYHEMQR-EDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M +  G  P  FT + +I  +  +  IEK      E +  G   
Sbjct: 381 FESKSRVSEVFSWFERM-KGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPP 439

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLF 499

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  PN   Y +L+S  ++A ++ +  + +R+++    + D   +N I++   + 
Sbjct: 500 DEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKT 559

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           G   +  E+   MK     PD +++ T++ A +  GM E A  L  +M A+
Sbjct: 560 GGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNAL 610



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 5/287 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 182
           LGK  + +    LFE M      P+V  Y  ++ A  +S   + E FS    MK  S   
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKG-SGIS 403

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 243 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           F  + E+ G     ++ +  MI   G +G ++     ++E + +G   ++   N L    
Sbjct: 464 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            RA M D+  + M  MQ+    P + +YNI++    K G   +  E    MK+  +KP++
Sbjct: 522 ARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDA 581

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           ++Y +++SA S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 582 VSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 3/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  LGK  + ++A   +  M  +  KP   V   +++  G++G LD+      +M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 176 KSVSDCKPDVYTYSILIKSCTKF-HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
             VS C P+V TY+ +IK+  +   R   +      M   GI  S  TY+ +IDG+ K  
Sbjct: 362 -GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTN 420

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+       M E G   P      S+I A G +   +   + + E       +  +  
Sbjct: 421 RIEKAMMLLEEMDEKG-FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVY 479

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            ++ K  G+AG  D   ++ D M K    P V  YN ++    +A  +++     +KM+ 
Sbjct: 480 AVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQE 539

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P+  +Y  +++  +K G   +   +L  ++NS +  D   +N ++SA   AG  E+
Sbjct: 540 HGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEE 599

Query: 415 MGELFLTMKERHCVPDNITFATMIQA 440
             EL   M       D IT++++++A
Sbjct: 600 AAELMKEMNALGFEYDLITYSSILEA 625



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 36/255 (14%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I      +++ EM      MV S  C      L+ +I   GN+  I K    + +
Sbjct: 125 TYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQ 184

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 340
                 +   Q  N +       G Y+K+  + + M       P  VTY+ +I  F K G
Sbjct: 185 IKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLG 244

Query: 341 HIEKMEEYFKKMKHRGM-----------------------------------KPNSITYC 365
             +       +MK  GM                                   +P+  TY 
Sbjct: 245 RQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYT 304

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+    KAG I +      +++  D   DT   N +I+  G+AG ++   +LF  M   
Sbjct: 305 ELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS 364

Query: 426 HCVPDNITFATMIQA 440
           HC+P+ +T+ T+I+A
Sbjct: 365 HCIPNVVTYNTIIKA 379


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           + D +TY+ ++    +  RFD I K+L +M   G + + VTYN +I  YG A   +E  +
Sbjct: 374 RHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALN 433

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M E G C PD  T  ++I  +  +G I+     Y      G+  D  T +++    
Sbjct: 434 VFNEMQEVG-CEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCL 492

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG       +   M +    P +VTYNI+I    KA + E   + +  M++ G +P+ 
Sbjct: 493 GKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDK 552

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++ A    G + + +S+  +++  + + D P +  ++  +G+AG+VEK  E +  
Sbjct: 553 VTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQA 612

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           M     +P+  T  +++ A+  L     A NL   M+A+
Sbjct: 613 MLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVAL 651



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 158/358 (44%), Gaps = 60/358 (16%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  LR+Q  ++    T+T ++ +LG+ ++ +  S L E M+ DG           
Sbjct: 359 VALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDG----------- 407

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK--SCTKFHRFDLIEKILAEMSY 213
                                    C+P+V TY+ LI    C  + +  L   +  EM  
Sbjct: 408 -------------------------CQPNVVTYNRLIHCYGCANYLKEAL--NVFNEMQE 440

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           +G E   VTY T+ID + KA   +   S +  M E+G   PD FT + +I+  G +GN+ 
Sbjct: 441 VGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAG-LSPDTFTYSVIINCLGKAGNLA 499

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                + E    G   ++ T NI+     +A  Y+    +   MQ   F P  VTY+IV+
Sbjct: 500 AAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVM 559

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           E  G  G++E+ E  F +M+ +   P+   Y  LV  + KAG + K     + + N+ ++
Sbjct: 560 EALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLL 619

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            + P  N ++SA             FL +   H +PD      ++Q+  ALG+  + Q
Sbjct: 620 PNVPTCNSLLSA-------------FLRL---HRLPDAY---NLVQSMVALGLRPSLQ 658



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 97/211 (45%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  +    G   D  T  +M+   G +   + + K   +    G + ++ T N L   YG
Sbjct: 364 FDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYG 423

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            A    +  +V + MQ+    P  VTY  +I+   KAG I+     +K+M+  G+ P++ 
Sbjct: 424 CANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTF 483

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  +++   KAG +     +  ++     + +   +N +I+   +A + E   +L+  M
Sbjct: 484 TYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDM 543

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +     PD +T++ +++A    G  E A+++
Sbjct: 544 QNAGFQPDKVTYSIVMEALGHCGYLEEAESV 574



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 5/239 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K + +++ALK++  + Q   +Q    T++ +M  LG C   E+A  +F  M      P  
Sbjct: 529 KARNYEMALKLYHDM-QNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDE 587

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            VY  LV  +G++G +++A      M + +   P+V T + L+ +  + HR      ++ 
Sbjct: 588 PVYGLLVDLWGKAGNVEKASEWYQAMLN-AGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQ 646

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M  LG+  S  TY  ++    +A+   +M      M  +G  HP    L SM +A  + 
Sbjct: 647 SMVALGLRPSLQTYTLLLSCCTEAQPAHDMGFFCELMAVTG--HPAHAFLLSMPAAGPDG 704

Query: 270 GNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
            N+ + + K+ +  +    +     ++ +     ++G+ ++  SV +   +R  +P  V
Sbjct: 705 QNVRDHVSKFLDMMHTEDREGKRGLVDSVVNFLNKSGLKEEAGSVWEAAAQRNVYPDAV 763



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 49/105 (46%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G + +  TY ++V    +A     +  +L Q+       +   +N +I  YG A  +
Sbjct: 369 RQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYL 428

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M
Sbjct: 429 KEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRM 473


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 152/338 (44%), Gaps = 17/338 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+  L K  +  +A  L+  ML  G+ P+   Y +++  + +   LD A      M
Sbjct: 320 TFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLM 379

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +   C PDV T+SILI       R D   K+L EMS  G+  + +TY T+I G+ +   
Sbjct: 380 -ATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGN 438

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEF 282
                     M+ SG C P++ T N+++    N+G ++   + +             + F
Sbjct: 439 LNAALDLLQEMISSGVC-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPF 497

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
           N   V+ D+QT NIL       G + +   + + M  R   P  +TYN VI+   K   +
Sbjct: 498 N--DVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRL 555

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           ++  + F  M  +G  P+ +T+ +L++ Y K G +     +  ++    ++ +   +  +
Sbjct: 556 DEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTL 615

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           I  + Q G++    ++F  M      PD IT   M+  
Sbjct: 616 IHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTG 653



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 163/376 (43%), Gaps = 52/376 (13%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYS 189
            A  LF  M   G+ P++  Y  +++ +  SG   EA   + +M  + +S   PDV T+S
Sbjct: 266 DAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMS---PDVVTFS 322

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
           +LI +  K  +F   E++  EM   GI  + +TYN++IDG+ K  + +  E  F  M  +
Sbjct: 323 VLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMA-T 381

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG---- 305
            GC PD+ T + +I  Y  +  ++   K  +E +  G+ A+  T   L   + + G    
Sbjct: 382 KGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNA 441

Query: 306 --------------------------------------MYDKM-RSVMDFMQKRFFF--- 323
                                                 M+  M +S MD      F    
Sbjct: 442 ALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVE 501

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V TYNI+I      G   + EE +++M HRG+ P++ITY S++    K   + +   +
Sbjct: 502 PDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQM 561

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              + +     D   F  +I+ Y + G V    E+F  M  R  V + IT+ T+I  +  
Sbjct: 562 FDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQ 621

Query: 444 LGMTEAAQNLENKMIA 459
           +G    A ++  +MI+
Sbjct: 622 VGNINGALDIFQEMIS 637



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 158/362 (43%), Gaps = 7/362 (1%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L R+ +  +  C   +FT L+     C +   A   F  +   G  PS+  ++ L+ 
Sbjct: 95  VISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLH 154

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA    + +     CKP+V  ++ L+    +  R      +L  M   G++
Sbjct: 155 GLCVEDRVSEALHFFHQI-----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 209

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + +TY TI+DG  K        +    M E     P++   +++I      G     + 
Sbjct: 210 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN 269

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            ++E    G+  ++ T N +   +  +G + + + ++  M +R   P VVT++++I    
Sbjct: 270 LFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALV 329

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G   + EE + +M  RG+ PN+ITY S++  +SK   +   + +   +       D  
Sbjct: 330 KEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVI 389

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            F+ +I  Y  A  V+   +L   M  R  V + IT+ T+I  +  LG   AA +L  +M
Sbjct: 390 TFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEM 449

Query: 458 IA 459
           I+
Sbjct: 450 IS 451



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 36/324 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           FT LM  L +  +  +A  L + M+ DGL+P+   Y  +V    + G    A + +  M+
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 239

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            VS  KP+V                                   V Y+ IIDG  K  + 
Sbjct: 240 EVSRIKPNV-----------------------------------VIYSAIIDGLWKDGRQ 264

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            + ++ FS M E G   P++FT N MI+ + +SG   + ++   E     +  D+ T ++
Sbjct: 265 TDAQNLFSEMQEKG-ISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSV 323

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  +  + G + +   + + M  R   P  +TYN +I+ F K   ++  E  F  M  +G
Sbjct: 324 LINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKG 383

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             P+ IT+  L+  Y  A  +     +L ++    ++ +T  +  +I  + Q G++    
Sbjct: 384 CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAAL 443

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           +L   M      P+ +T  T++  
Sbjct: 444 DLLQEMISSGVCPNVVTCNTLLDG 467



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 117/277 (42%), Gaps = 6/277 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P V  +  L+    +  R D++  +  +M    I C+  ++  +I  +    K     S+
Sbjct: 74  PCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALST 133

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  + + G  HP + T ++++        + +   ++++      K ++     L     
Sbjct: 134 FGKITKLGF-HPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLC 188

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNS 361
           R G   +  +++D M +    P  +TY  +++   K G         +KM+    +KPN 
Sbjct: 189 REGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNV 248

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           + Y +++    K G      ++  +++   +  +   +NC+I+ +  +G   +   L   
Sbjct: 249 VIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLRE 308

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           M ER   PD +TF+ +I A    G    A+ L N+M+
Sbjct: 309 MFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEML 345



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 14/216 (6%)

Query: 60  AIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW---------- 109
           A+  +++ +SS    N+     L  LD      K + AL++F ++++ +           
Sbjct: 442 ALDLLQEMISSGVCPNVVTCNTL--LDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFND 499

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
            +   QT+  L+  L    +  +A  L+E M   GL P    Y +++    +   LDEA 
Sbjct: 500 VEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEAT 559

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
              + M S     PDV T++ LI    K  R     ++  EM   GI  +A+TY T+I G
Sbjct: 560 QMFDSMGS-KGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHG 618

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           + +          F  M+ S G +PD  T+ +M++ 
Sbjct: 619 FCQVGNINGALDIFQEMISS-GVYPDTITIRNMLTG 653


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L + K+ +    L   +  +G+KP   +  A+++A+ +SG +DEA      M
Sbjct: 59  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKM 118

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAK 234
           K    CKP   TY+ LIK      R     K+L  M     ++ +  TYN +I  +   K
Sbjct: 119 KEYG-CKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKK 177

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K EE  +    MV SG   PD+ T N+M  AY  +G  E+ E+   +     VK + +T 
Sbjct: 178 KLEEAWNVLHKMVASG-IQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTC 236

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            I+   Y + G   +    +  M++    P  V +N +I+ +        ++E    M+ 
Sbjct: 237 GIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEE 296

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+KP+ +T+ ++++A+S AGL+   + I   +  + +  D   ++ +   Y +AG   K
Sbjct: 297 FGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRK 356

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              L  +M +    P+ + F T+I  + A G  + A  L  KM  M
Sbjct: 357 AEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM 402



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 172/363 (47%), Gaps = 10/363 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTAL 155
           A+KIF  +++    +    T+  L+   G   +P ++  L E+M  D  +KP+   Y  L
Sbjct: 111 AMKIFQKMKEYG-CKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNIL 169

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + A+     L+EA++ ++ M + S  +PDV TY+ + ++  +    +  E+++ +M Y  
Sbjct: 170 IQAWCTKKKLEEAWNVLHKMVA-SGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNI 228

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           ++ +  T   II GY K     E       M E G   P+    NS+I  Y ++ +   +
Sbjct: 229 VKPNERTCGIIISGYCKEGNMPEALRFLYRMKELG-VDPNPVVFNSLIKGYLDTTDTNGV 287

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           ++        G+K D+ T + +  ++  AG+ +    + + M K    P +  Y+I+ + 
Sbjct: 288 DEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKG 347

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           + +AG   K E     M   G++PN + + +++S +  AG   K+D   R  E    +  
Sbjct: 348 YVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAG---KMDRAFRLCEKMHEMGT 404

Query: 396 TP---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
           +P    +  +I  YG+A    K  EL  TM+ER  VP+  T   +  A+ A+G+ + A  
Sbjct: 405 SPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANR 464

Query: 453 LEN 455
           + N
Sbjct: 465 ILN 467



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 142/327 (43%), Gaps = 37/327 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++K+  ++ Q +  +   +T+  L+      K+ E+A  +   M++ G++P V  Y  + 
Sbjct: 146 SMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMA 205

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            AY Q+G  + A   I  M   +  KP+  T  I+I    K        + L  M  LG+
Sbjct: 206 RAYAQNGETERAERLILKM-PYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGV 264

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + V +N++I GY        ++ + + M E  G  PD+ T +++++A+ ++G +E  E
Sbjct: 265 DPNPVVFNSLIKGYLDTTDTNGVDEALTLM-EEFGIKPDVVTFSTIMNAWSSAGLMENCE 323

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV--------- 327
           + +N+    G++ DI   +IL K Y RAG   K  +++  M K    P VV         
Sbjct: 324 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGW 383

Query: 328 --------------------------TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
                                     TY  +I  +G+A    K EE    M+ RG+ P  
Sbjct: 384 CAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEM 443

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVE 388
            T   +  A+   GL  + + IL   E
Sbjct: 444 STMQLVADAWRAIGLFKEANRILNGSE 470


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 171/385 (44%), Gaps = 41/385 (10%)

Query: 115 QTFTKLMVMLGKCKQ--PEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFS 170
             F+  +++ G C +   ++A  L  +M  DG    P V  Y+ +++ + + G LD+ +S
Sbjct: 50  DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYS 109

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           T N+M       P+V TY+ +I +  K    D   ++L  M   G+    +TYN+I+ G+
Sbjct: 110 TYNEMLD-QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
             + + +E    F   + S G  PD+ T NS++     +G   +  K ++     G+K +
Sbjct: 169 CSSGQPKE-AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPE 227

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQK------RFFF--------------------- 323
           I T   L + Y   G   +M  ++D M +       + F                     
Sbjct: 228 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 287

Query: 324 --------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
                   P  VTY  VI    K+G +E    YF++M   G+ P +I Y SL+       
Sbjct: 288 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 347

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
              + + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      PD IT++
Sbjct: 348 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 436 TMIQAYNALGMTEAAQNLENKMIAM 460
           T+I  Y   G  + A  L   M+++
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSV 432



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 154/371 (41%), Gaps = 36/371 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ+K + A+ +F  +RQQ        T+  ++ +L K  + E A L FE M+ +GL P  
Sbjct: 275 KQEKVEEAMLVFSKMRQQGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 333

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+         + A   I +M     C                            
Sbjct: 334 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 393

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TYS LI       + D   K+LA M  +G++   VTY+T+I+GY K  +
Sbjct: 394 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISR 453

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 454 MKDALVLFREM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYN 512

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     +  + D    +   +          T+NI+I+   K G  ++ ++ F      
Sbjct: 513 IILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 572

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN  TY  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + 
Sbjct: 573 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 632

Query: 416 GELFLTMKERH 426
           G     + E+H
Sbjct: 633 GTYLSMIDEKH 643



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM  L K  +  +A  +F+ M   GLKP +  Y  L+  Y   G L E    + D+
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DL 253

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   P+ Y +SIL+ +  K  + +    + ++M   G+  +AVTY  +I    K+ +
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M++ G   P     NS+I         E+ E+   E    G+  +    N
Sbjct: 314 VEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 372

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  S+ + G   +   + D M +    P ++TY+ +I+ +  AG +++  +    M   
Sbjct: 373 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 432

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GMKP+ +TY +L++ Y K   +     + R++E+S V  D   +N I+    Q       
Sbjct: 433 GMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 492

Query: 416 GELFL 420
            EL++
Sbjct: 493 KELYV 497



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 155/352 (44%), Gaps = 11/352 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+    K ++ E+A L+F  M   GL P+   Y A++    +SG +++A      M
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 324

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI      ++++  E+++ EM   GI  + + +N+IID + K  +
Sbjct: 325 ID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 383

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   PDI T +++I  Y  +G +++  K       +G+K D  T +
Sbjct: 384 VIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYS 442

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +         +   M+     P ++TYNI+++   +       +E +  +   
Sbjct: 443 TLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKS 502

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  LR  +N    D+ L+   FN +I A  + G  
Sbjct: 503 GRQLELSTYNIILHGLCKNKL---TDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRN 559

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++  +LF+       VP+  T+  M +     G+ E    L+   ++M++N 
Sbjct: 560 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDNG 608



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 150/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T+  ++       QP++A +  + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 158 CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 217

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KP++ TY  L++          +  +L  M   GI  +   ++ ++  Y K 
Sbjct: 218 SMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 276

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +K EE    FS M + G  +P+  T  ++I     SG +E    ++ +    G+      
Sbjct: 277 EKVEEAMLVFSKMRQQG-LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV 335

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L         +++   ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 336 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 395

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+  Y  AG + +   +L  + +  +  D   ++ +I+ Y +   ++
Sbjct: 396 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMK 455

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 456 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 495


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 1/262 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DVYTY+ +I  C      D    +  EM    IE +  TY  +++   K         ++
Sbjct: 209 DVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTY 268

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           + M + G C P++ T N++I  YG  G  E+  K        GV+  ++T N L  +   
Sbjct: 269 NHMRQDGAC-PNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNM 327

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G   +  +V   M    + P   TYN +I  +GKAG ++K+ E F++M H+G + + IT
Sbjct: 328 CGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVIT 387

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y SL+SA  KAG       +  ++     I +T  +N +I+A  Q    EK  E+F  M+
Sbjct: 388 YSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQ 447

Query: 424 ERHCVPDNITFATMIQAYNALG 445
           +  C PD +TF  +I +Y   G
Sbjct: 448 KGGCTPDVVTFTALISSYEKGG 469



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 2/290 (0%)

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  YTA++S       +D A     +M+ V + + +V+TY+ L+  C K     L     
Sbjct: 210 VYTYTAMISMCIYQQDVDRAMDLAKEMR-VRNIERNVHTYTALMNVCIKCGNCPLALDTY 268

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   G   + VTYNT+ID YGK   +E+     + M ++ G  P + T N++I A   
Sbjct: 269 NHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLM-KTEGVEPVLRTYNTLIIACNM 327

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G   +    Y      G   +  T N L  +YG+AG  DK+  V   M  +    +V+T
Sbjct: 328 CGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVIT 387

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y+ +I    KAG  E   E F +M   G  PN++TY SL++A ++     K   +  Q++
Sbjct: 388 YSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQ 447

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
                 D   F  +IS+Y + G   +    +  M+ + C PD I F  +I
Sbjct: 448 KGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAII 497



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+  +K+  L++ +   +   +T+  L++    C QP +A  +++ ML +G  P+   Y 
Sbjct: 296 WEQGIKVLTLMKTEG-VEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYN 354

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           AL+SAYG++G LD+      +M     C+  V TYS LI +C K  +++L  ++  EM+ 
Sbjct: 355 ALISAYGKAGQLDKVMEVFQEMVH-KGCERSVITYSSLISACEKAGQWELALELFNEMAG 413

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G   + VTYN++I    +  ++E+    F  M + GGC PD+ T  ++IS+Y   G   
Sbjct: 414 EGCIPNTVTYNSLITACAQGAQWEKASEVFEQM-QKGGCTPDVVTFTALISSYEKGGQWR 472

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           +    Y +  L   K D    N +  +    G+    R  +   Q+
Sbjct: 473 RALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQRKALALFQQ 518



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 2/263 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+T LM +  KC     A   +  M  DG  P+V  Y  L+  YG+ GL ++    +  
Sbjct: 246 HTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTL 305

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK+    +P + TY+ LI +C    +      +   M   G   +A TYN +I  YGKA 
Sbjct: 306 MKT-EGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAG 364

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +++   F  MV  G C   + T +S+ISA   +G  E   + +NE    G   +  T 
Sbjct: 365 QLDKVMEVFQEMVHKG-CERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTY 423

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  +  +   ++K   V + MQK    P VVT+  +I ++ K G   +    +++M+ 
Sbjct: 424 NSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRL 483

Query: 355 RGMKPNSITYCSLVSAYSKAGLI 377
           +  KP++I + +++    + G+I
Sbjct: 484 QRCKPDAIVFNAIIDTLWETGVI 506



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++ M    +  ++A  L + M    ++ +V  YTAL++   + G    A  T N M
Sbjct: 212 TYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHM 271

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C P+V TY+ LI    K   ++   K+L  M   G+E    TYNT+I       +
Sbjct: 272 RQDGAC-PNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQ 330

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  + +  M++  G  P+  T N++ISAYG +G ++K+ + + E    G +  + T +
Sbjct: 331 PREAMAVYKRMLDE-GYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYS 389

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  +AG ++    + + M      P  VTYN +I    +    EK  E F++M+  
Sbjct: 390 SLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKG 449

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G  P+ +T+ +L+S+Y K G   +      Q+       D   FN II    + G
Sbjct: 450 GCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETG 504



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 37/186 (19%)

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D+   +   M+ R     V TY  ++    K G+     + +  M+  G  PN +TY +L
Sbjct: 227 DRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTL 286

Query: 368 VSAYSKAGL---------IMK---VDSILRQVENSDVI------------------LDTP 397
           +  Y K GL         +MK   V+ +LR   N+ +I                  LD  
Sbjct: 287 IDVYGKMGLWEQGIKVLTLMKTEGVEPVLR-TYNTLIIACNMCGQPREAMAVYKRMLDEG 345

Query: 398 F------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +      +N +ISAYG+AG ++K+ E+F  M  + C    IT++++I A    G  E A 
Sbjct: 346 YSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELAL 405

Query: 452 NLENKM 457
            L N+M
Sbjct: 406 ELFNEM 411


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 179/411 (43%), Gaps = 58/411 (14%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSA 158
             +LR+    Q +        ++   CK     +A  +F  M   G+ P+V  Y  ++  
Sbjct: 65  LNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y   G   +A   + DM    +  PDV T+S LI +  K  +    E++  EM    I  
Sbjct: 125 YCSYGKWSDAEQLLRDMIE-RNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFP 183

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA-----------YG 267
           + +TY+++IDG+ K  + E+ +  F  MV S GC PDI TLN++I             + 
Sbjct: 184 TTITYSSMIDGFCKHSRLEDAKHMFDLMV-SKGCSPDIITLNTLIDGCCRAKRHLIHGFC 242

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR------- 320
             GN+   +  + E    GV  DI T N L       G  +K   +    QK        
Sbjct: 243 QVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTA 302

Query: 321 --------------------FF--FPT------VVTYNIVIETFGKAGHIEKMEEYFKKM 352
                                F   P       VVTYNI+I  F K G+  + E+ + +M
Sbjct: 303 TCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEM 362

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMK----VDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +G+ P+++TY S+V  + K   + +    VDS++ +  + DV+     F+ +I  Y +
Sbjct: 363 LCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVT----FSTLIKGYCK 418

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           AG V+   ELF  M +R  V D IT+  +I  +  +G    AQ++  +M++
Sbjct: 419 AGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVS 469



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 149/336 (44%), Gaps = 13/336 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +   A  L+  ML   + P+   Y++++  + +   L++A    + M
Sbjct: 152 TFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLM 211

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHR-----------FDLIEKILAEMSYLGIECSAVTYN 224
            S   C PD+ T + LI  C +  R            ++ + +  EM   G+    VT N
Sbjct: 212 VS-KGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCN 270

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           T++ G  +  K E+    F    +S     D  T N +I+       +++    +N   +
Sbjct: 271 TLLAGLCENGKLEKALEMFKVFQKSK-MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPV 329

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            GV+ D+ T NIL   + + G + +   +   M  +   P+ VTYN +++ F K   +E+
Sbjct: 330 NGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEE 389

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             +    M   G  P+ +T+ +L+  Y KAG +     +  ++    ++ DT  +N +I 
Sbjct: 390 ARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIH 449

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            + + GD+    ++F  M      PD ITF +M+  
Sbjct: 450 GFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAG 485



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 151/341 (44%), Gaps = 13/341 (3%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           A   TFT LM  L +  +  QA  L + M+ +G +P    Y  +V+   + G    A + 
Sbjct: 8   ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +  M   S  K +V  YS ++    K       + I  EM   GI  + +TYN +IDGY 
Sbjct: 68  LRKMDE-SQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYC 126

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
              K+ + E     M+E     PD+ T +++I+A+   G +   E+ Y E     +    
Sbjct: 127 SYGKWSDAEQLLRDMIER-NIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTT 185

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----------TFGKAG 340
            T + +   + +    +  + + D M  +   P ++T N +I+            F + G
Sbjct: 186 ITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVG 245

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           ++   ++ F++M   G+ P+ +T  +L++   + G + K   + +  + S + LDT   N
Sbjct: 246 NVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCN 305

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            II+   +   V++  +LF ++       D +T+  +I  +
Sbjct: 306 IIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVF 346



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 157/356 (44%), Gaps = 20/356 (5%)

Query: 74  KNLWPKPV-LEALDEA-IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP- 130
           +N+ P  V   AL  A +K+ K   A +++  + ++  +     T T   ++ G CK   
Sbjct: 144 RNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPT---TITYSSMIDGFCKHSR 200

Query: 131 -EQASLLFEVMLSDGLKPSVDVYTALVSA-----------YGQSGLLDEAFSTINDMKSV 178
            E A  +F++M+S G  P +     L+             + Q G ++ A     +M S 
Sbjct: 201 LEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMIS- 259

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +   PD+ T + L+    +  + +   ++        ++    T N II+G  K  K +E
Sbjct: 260 NGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDE 319

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               F+++    G   D+ T N +I  +   GN  + E  Y E    G+     T N + 
Sbjct: 320 AWDLFNSL-PVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMV 378

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             + +    ++ R ++D M      P VVT++ +I+ + KAG ++   E F +M  RG+ 
Sbjct: 379 DGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLV 438

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            ++ITY +L+  + K G +     I  ++ +S V  DT  F  +++      +++K
Sbjct: 439 ADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQK 494



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 2/258 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  LF+ M+S+G+ P +     L++   ++G L++A       +  S    D  T +I+I
Sbjct: 250 AQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQK-SKMDLDTATCNIII 308

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
               K ++ D    +   +   G+E   VTYN +I  + K   F   E  +  M+   G 
Sbjct: 309 NGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEML-CKGI 367

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P   T NSM+  +     +E+  +  +     G   D+ T + L K Y +AG  D    
Sbjct: 368 IPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLE 427

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           +   M +R      +TYN +I  F K G +   ++ F++M   G+ P++IT+ S+++   
Sbjct: 428 LFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLC 487

Query: 373 KAGLIMKVDSILRQVENS 390
               + K  ++L  ++ S
Sbjct: 488 TKAELQKGLTMLEDLQKS 505



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 118/260 (45%), Gaps = 12/260 (4%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   + VT+ T+++G  +  +  +  +    MVE G   PD  T  ++++     G
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGH-QPDAVTYGTIVNGMCKLG 59

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           +         + +   +KA++   + +     + G + K +++   M ++  FP V+TYN
Sbjct: 60  DTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYN 119

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+ +   G     E+  + M  R + P+ +T+ +L++A+ K G +   + + R++   
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT-----------MIQ 439
           ++   T  ++ +I  + +   +E    +F  M  + C PD IT  T           +I 
Sbjct: 180 NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIH 239

Query: 440 AYNALGMTEAAQNLENKMIA 459
            +  +G    AQ+L  +MI+
Sbjct: 240 GFCQVGNVNVAQDLFQEMIS 259



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 12/281 (4%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C  +V T++ L+    +  R      ++  M   G +  AVTY TI++G  K        
Sbjct: 6   CPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSAL 65

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           +    M ES     ++   ++++      GN  K +  + E +  G+  ++ T N +   
Sbjct: 66  NMLRKMDES-QIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y   G +     ++  M +R   P VVT++ +I  F K G +   EE +++M  R + P 
Sbjct: 125 YCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPT 184

Query: 361 SITYCSLVSAYSKAGLIMKV----DSILRQVENSDVI-LDTPFFNC------IISAYGQA 409
           +ITY S++  + K   +       D ++ +  + D+I L+T    C      +I  + Q 
Sbjct: 185 TITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQV 244

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G+V    +LF  M      PD +T  T++      G  E A
Sbjct: 245 GNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKA 285


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            G V     L   +K     PDNI     I      G  E A
Sbjct: 302 VGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 164/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I     +   + AG I +   
Sbjct: 282 SSGVDIDQVLYQTMIVAYERVGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAYG 401

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 402 KLHEFDKANDVYMEM 416



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 153/366 (41%), Gaps = 40/366 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               +++ G  P+  T +++IS +G  G +++    + +    GV  D      +  +Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G+    + ++  +++    P  +  +I I     AG IE+    F++    G   +  
Sbjct: 301 RVGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++  +SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 423 KERHCV 428
           +E  CV
Sbjct: 417 QEVGCV 422



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 179/420 (42%), Gaps = 47/420 (11%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQAR----------C----QTFTKLMVMLGKCKQP 130
           +D++ +   +  A+ + GL R  Q  +AR          C      +  L+    K K  
Sbjct: 2   IDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDF 61

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
            QA      M+ +   P+V  YT +V    ++G   +A   +++M+    C P++YTY++
Sbjct: 62  GQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRD-KGCSPNIYTYNV 120

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME---------- 240
           +++   +  + D  +K+L EM+  G     VTYN+ I G  K  + +E            
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTP 180

Query: 241 ------SSFSAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
                 +  + + +SG               GC PD+ T +S+I  +   G +E+     
Sbjct: 181 DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLL 240

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +    +G + ++   N L  +  R G   K   ++  M++R F P VV+YN  I+   KA
Sbjct: 241 DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA 300

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             ++K +  F +M  RG  PN+ +Y  LV    K   +    +++ Q      I+D   +
Sbjct: 301 ERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLY 360

Query: 400 NCIISAYGQAGDVEKMGELFL-TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             ++    + G  ++   LF   + E+ C PD   +  M+ ++      + A  +  +M+
Sbjct: 361 TVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML 420



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 158/347 (45%), Gaps = 12/347 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T ++  L K    + AS + + M + G  P V  Y++L+  + + G ++ A   ++ M
Sbjct: 184 SYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 243

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +  C+P++  Y+ L+ +  +       E +L EM   G     V+YN  IDG  KA++
Sbjct: 244 LKLG-CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 302

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK----MEKWYNEFNLMGVKADI 291
            ++ ++ F  MVE G C P+  + + ++        ++     +E+   ++ ++    DI
Sbjct: 303 VKKAKAVFDRMVERG-CTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV----DI 357

Query: 292 QTLNILTKSYGRAGMYDKMRSVMD-FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
               +L     + G +D+  ++    + ++   P V  YN+++++  K   I+K  +  K
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 417

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  R    N +T+  LV        +   +++L  + +   I D   +  ++ A  + G
Sbjct: 418 QMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCG 476

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 ELF    +  CVPD +T++ +I       M E A  L  K+
Sbjct: 477 KSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 523



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 148/363 (40%), Gaps = 50/363 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K  + E+A  L + ML  G +P++  Y +L+ A  + G + +A   + +M
Sbjct: 219 TYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEM 278

Query: 176 ----------------------------KSVSD------CKPDVYTYSILIKSCTKFHRF 201
                                       K+V D      C P+  +YS+L++   K    
Sbjct: 279 ERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKEL 338

Query: 202 D----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
           D    L+E+   +   + I    + Y  ++DG  K  +F+E  + FS +++   C PD+F
Sbjct: 339 DDAITLVEQAREKYQIVDI----LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVF 394

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             N M+ ++     I+K  + + +  L     ++ T NIL              +++  M
Sbjct: 395 FYNVMLDSHCKRRQIDKALQIHKQM-LERNCCNVVTWNILVHGLCVDDRLSDAETMLLTM 453

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
               F P  VTY  +++   K G      E F++    G  P+ +TY +L++      + 
Sbjct: 454 VDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMA 513

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   +  +       LD   +N +I  Y + G  +   +LF+ + E    P+  TF   
Sbjct: 514 EEAYLLFTK-------LDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKE 566

Query: 438 IQA 440
           I  
Sbjct: 567 ISG 569



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 121/280 (43%), Gaps = 20/280 (7%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +YT L+    + G  DEA +  + +     C+PDV+ Y++++ S  K  + D   +I  +
Sbjct: 359 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 418

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M      C+ VT+N ++ G     +  + E+    MV+ G   PD  T  +++ A    G
Sbjct: 419 MLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFI-PDFVTYGTLVDAMCKCG 476

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
                 + + E    G   D+ T + L        M ++   +       F    V  +N
Sbjct: 477 KSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLL-------FTKLDVALWN 529

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I  + + G  +   + F ++    ++PN+ T+   +S     G ++K +S+ +     
Sbjct: 530 AMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEIS-----GKLVKAESLGKARGLF 584

Query: 391 DVILDTPFF------NCIISAYGQAGDVEKMGELFLTMKE 424
           D  +   FF      N +I  + + GD+E+   +F +MK+
Sbjct: 585 DRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 142/377 (37%), Gaps = 70/377 (18%)

Query: 36  GPIQELGIQKEAEKDLSKILRTEF---------AIKNIEKKVSSKKYKNLWPKPVLEA-- 84
           G +  LG   +AE  L ++ R  F          I  + K    KK K ++ + V     
Sbjct: 260 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCT 319

Query: 85  ---------LDEAIKQKKWQLALKIFGLLRQQQWYQ-ARCQTFTKLMVMLGKCKQPEQAS 134
                    ++E  K+K+   A+ +    R++  YQ      +T L+  L K  + ++A 
Sbjct: 320 PNASSYSMLVEELCKKKELDDAITLVEQAREK--YQIVDILLYTVLLDGLCKGGRFDEAC 377

Query: 135 LLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
            LF  +L + + +P V  Y  ++ ++ +   +D+A      M   + C  +V T++IL+ 
Sbjct: 378 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC--NVVTWNILVH 435

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
                 R    E +L  M   G     VTY T++D   K  K       F   V+ GGC 
Sbjct: 436 GLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVK-GGCV 494

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD----- 308
           PD+ T +++I+   +       E    E  L+  K D+   N +   Y   G  D     
Sbjct: 495 PDVVTYSALITGLVH-------ENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKL 547

Query: 309 -------------------------------KMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
                                          K R + D   K  FFP +   N +I+ F 
Sbjct: 548 FVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFA 607

Query: 338 KAGHIEKMEEYFKKMKH 354
           K G +E+    F  MK 
Sbjct: 608 KCGDLEEARRIFYSMKQ 624



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 51/106 (48%)

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M  +  +P++ T+  L+    ++  + K   +L +++    + D   +N +IS Y +A D
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +  +    M + HC+P  +T+  ++      G T+ A  L ++M
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEM 106


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 160/338 (47%), Gaps = 8/338 (2%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+  +  +A  +F+VM   GL P+   +TAL+  Y   G  ++  +    M+ +   +
Sbjct: 47  GYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMR-IGGIE 105

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P++YTY+IL+    +   F+    +  EM   GI  + V+YNT+I G  + +K ++    
Sbjct: 106 PNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQL 165

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M   G   P + T N ++  YG +G +     + N+  + G +    T N L   + 
Sbjct: 166 LELMRREG-IRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFC 224

Query: 303 RAGMYDKMRSVMDF--MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           RA   D +R+   F  M++R   PT VTY I+I+ F +   ++K  E F  M+  G++ +
Sbjct: 225 RA--RDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVD 282

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             TY  LV A    G +     + + +    + +    ++ +I  YG+ G   K  +L +
Sbjct: 283 VRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIM 342

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            M+++  VP++ ++   I+     G    A+ L + M+
Sbjct: 343 EMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMV 380



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 120/261 (45%), Gaps = 4/261 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L + ++ + A+ L E+M  +G++PSV  +  LV  YG++G +  A    N M
Sbjct: 145 SYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQM 204

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + ++  +P   TY+ LI    +        +  ++M   G+  + VTY  +ID + +   
Sbjct: 205 R-MAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFAREND 263

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++    F+ M E  G   D+ T   ++ A    GN++   K +      G++      +
Sbjct: 264 MDKAFEMFAGM-EKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYD 322

Query: 296 ILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +L   YGR G  Y  M+ +M+ M+K+ F P   +Y + I      G   + E     M  
Sbjct: 323 MLIYGYGREGSSYKAMKLIME-MRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVR 381

Query: 355 RGMKPNSITYCSLVSAYSKAG 375
            G++ +      L++A ++ G
Sbjct: 382 AGVQTSESVRQVLLNAKARQG 402



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/194 (18%), Positives = 86/194 (44%)

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           ++G    D+    +++  Y  SG++ + ++ ++    +G+  +  T   L   Y   G  
Sbjct: 30  KAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRR 89

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +K  ++ + M+     P + TYNI++  + + G  E+    F++M  +G+  N ++Y +L
Sbjct: 90  EKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTL 149

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++   +   +     +L  +    +      FN ++  YG+AG +         M+    
Sbjct: 150 IAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGY 209

Query: 428 VPDNITFATMIQAY 441
            P  +T+  +I  +
Sbjct: 210 QPSAVTYNALIAGF 223



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 286 GVKADIQTLNI-----LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           G KA   TL++     L   Y R+G   + + V D M +    P  VT+  +I  +   G
Sbjct: 28  GAKAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHG 87

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             EK    F+KM+  G++PN  TY  LV  + + G   +   +  ++    +  +   +N
Sbjct: 88  RREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYN 147

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I+   +   ++   +L   M+     P  +TF  ++  Y   G    A +  N+M
Sbjct: 148 TLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQM 204



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 12/201 (5%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           YQ    T+  L+    + +   +A+  F  M   GL P+   YT L+ A+ +   +D+AF
Sbjct: 209 YQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAF 268

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                M+  +  + DV TY +L+ +           K+   +   G++   V Y+ +I G
Sbjct: 269 EMFAGMEK-AGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYG 327

Query: 230 YGKAKKFEEMESSFSAM-----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           YG+        SS+ AM     +   G  P+  +    I    N G   + E   ++   
Sbjct: 328 YGREG------SSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVR 381

Query: 285 MGVKADIQTLNILTKSYGRAG 305
            GV+       +L  +  R G
Sbjct: 382 AGVQTSESVRQVLLNAKARQG 402


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 6/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK  + + A    + M  D +   + +Y+ L+    +     +A S  + +
Sbjct: 11  TYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S   PD+  Y+ +I    K   F     ++ EM   G+  + ++Y+T++  Y + KK
Sbjct: 71  KR-SGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVENKK 129

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     M ++ ++ + N
Sbjct: 130 FIEALSVFAEMREIQ-CSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYN 188

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M++R
Sbjct: 189 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNR 248

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN+ITY +++S + K G + +   + +++ +S + +D   +  +I  Y +AG V   
Sbjct: 249 GIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHA 308

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             L   +K     PDNI   T I      G  E A
Sbjct: 309 KRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 154/315 (48%), Gaps = 4/315 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ G  D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEE--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               I + +   GI    V YN++I+ +GKAK F+E  S    M  + G  P+  + +++
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEM-RTAGVMPNTISYSTL 120

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++ Y  +    +    + E   +    D+ T NI+   YG+ GM  +   +    +K   
Sbjct: 121 LTMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEI 180

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VV+YN ++  +G A    +    F+ M+ + ++ N +TY +++  Y K     K ++
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++++++N  +  +T  ++ IIS +G+ G +++   LF  ++      D + + TMI  Y 
Sbjct: 241 LIQEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYE 300

Query: 443 ALGMTEAAQNLENKM 457
             G+   A+ L +++
Sbjct: 301 RAGLVAHAKRLLHEL 315



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 157/362 (43%), Gaps = 39/362 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I +M+
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMR 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + AEM  +      +T N +ID YG+    
Sbjct: 107 T-AGVMPNTISYSTLLTMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F          P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWGX-RKMEIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 282 SSGIEIDQVLYQTMIITYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ   +  + D   F  +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIEAGEVKDITVFEHMIDLFSKYKKYSNIIEVFDKMRGIGYFPDSRVIALVLNAYG 401

Query: 443 AL 444
            L
Sbjct: 402 KL 403



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAGH-------IEKMEE----------------------- 347
           + R   P   TY+ +I  FGK G        ++KMEE                       
Sbjct: 1   RXRALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C  D IT   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKL 171


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 171/344 (49%), Gaps = 8/344 (2%)

Query: 102 GLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           GL ++ +  +A CQ    T++ L+  L K ++  +A  +F  M +  + P++  YT+L+ 
Sbjct: 101 GLFKKME--EAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ 158

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                    EA + +N+M S+ +  P+V T+++L+ +  K  +    E +L  M+ +G+E
Sbjct: 159 GLCNFSRWKEASALLNEMTSL-NIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVE 217

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
              VTYN+++ GY    +  E    F  M+ + GC PD+F+ + +I+ Y  +  I++ ++
Sbjct: 218 PDVVTYNSLMYGYSMWTEVVEARKLFDVMI-TKGCKPDVFSYSILINGYCKAKRIDEAKQ 276

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            +NE    G   +  + N L     + G   + + +   M      P + TY I+++ F 
Sbjct: 277 LFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFC 336

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G++ K    F+ M+   +KPN + Y  LV+A  K+G +     +  ++    +  +  
Sbjct: 337 KQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQ 396

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +  II+   + G +++  E F  M++  C PD  ++  +I+ +
Sbjct: 397 IYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGF 440



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 166/344 (48%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L K  +   A+ LF+ M   G + +V  Y+ L+ +  +   ++EA    + M
Sbjct: 82  TYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYM 141

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K+  D  P ++TY+ LI+    F R+     +L EM+ L I  + VT+N ++D + K  K
Sbjct: 142 KA-KDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGK 200

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
               E     M E G   PD+ T NS++  Y     + +  K ++     G K D+ + +
Sbjct: 201 VLAAEGVLKTMTEMG-VEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYS 259

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   Y +A   D+ + + + M  +   P  V+YN +I    + G + + ++ FK M   
Sbjct: 260 ILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTN 319

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN  TY  L+  + K G + K   + R ++++ +  +   +N +++A  ++G+++  
Sbjct: 320 GNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDA 379

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGM----TEAAQNLEN 455
            ELF  +      P+   + T+I      G+     EA +N+E+
Sbjct: 380 RELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMED 423



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 161/345 (46%), Gaps = 2/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  LGK  +  QA  LF+ M++ G +P    YT +++   + G    A      M
Sbjct: 47  TFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM 106

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + C+ +V TYS LI S  K+ R +    I + M    I  +  TY ++I G     +
Sbjct: 107 EE-AGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSR 165

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E  +  + M  S    P++ T N ++  +   G +   E        MGV+ D+ T N
Sbjct: 166 WKEASALLNEMT-SLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYN 224

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y       + R + D M  +   P V +Y+I+I  + KA  I++ ++ F +M H+
Sbjct: 225 SLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQ 284

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN+++Y +L+    + G + +   + + +  +  + +   +  ++  + + G + K 
Sbjct: 285 GSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKA 344

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             LF  M+  +  P+ + +  ++ A    G  + A+ L +++  +
Sbjct: 345 FRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVI 389



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 1/276 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+  T +ILI    +  R DL   +LA+   LG++ + VT+ T+I+G GK  KF +    
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  MV + GC PD +T  ++I+     G        + +    G + ++ T + L  S  
Sbjct: 68  FDDMV-ARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLC 126

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +    ++   +  +M+ +   PT+ TY  +I+        ++      +M    + PN +
Sbjct: 127 KYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVV 186

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T+  LV  + K G ++  + +L+ +    V  D   +N ++  Y    +V +  +LF  M
Sbjct: 187 TFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVM 246

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             + C PD  +++ +I  Y      + A+ L N+MI
Sbjct: 247 ITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMI 282



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 2/314 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P+      L++ + Q   +D  FS +     +   +P + T++ LI    K  +F  
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLG-LQPTIVTFTTLINGLGKVGKFAQ 63

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++  +M   G +    TY TII+G  K  +       F  M E  GC  ++ T +++I
Sbjct: 64  AVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM-EEAGCQLNVVTYSTLI 122

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            +      + +    ++      +   I T   L +       + +  ++++ M      
Sbjct: 123 HSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIM 182

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT+N++++TF K G +   E   K M   G++P+ +TY SL+  YS    +++   +
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKL 242

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              +       D   ++ +I+ Y +A  +++  +LF  M  +   P+N+++ T+I     
Sbjct: 243 FDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302

Query: 444 LGMTEAAQNLENKM 457
           LG    AQ+L   M
Sbjct: 303 LGRLREAQDLFKNM 316



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%)

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
           L G+  +  TLNIL   + +    D   SV+    K    PT+VT+  +I   GK G   
Sbjct: 3   LAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFA 62

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +  E F  M  RG +P+  TY ++++   K G       + +++E +   L+   ++ +I
Sbjct: 63  QAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLI 122

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +  +   V +  ++F  MK +   P   T+ ++IQ        + A  L N+M ++ 
Sbjct: 123 HSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 8/352 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   LR Q W+      F  L+   GK      A  +  V+   G  P+V  
Sbjct: 117 KKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVIS 176

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI---L 208
           YTAL+ +YG+ G  + A +    M+S S  +P   TY I++K+  +  +F   E++   L
Sbjct: 177 YTALMESYGRGGKCNNAEAIFRRMQS-SGPEPSAITYQIILKTFVEGDKFKEAEEVFETL 235

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +     ++     Y+ +I  Y KA  +E+    FS+MV  G     + T NS++S   +
Sbjct: 236 LDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLMSFETS 294

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              + K+   Y++     ++ D+ +  +L K+YGRA   ++  SV + M      PT   
Sbjct: 295 YKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKA 351

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+++ F  +G +E+ +  FK M+   + P+  +Y +++SAY  A  +   +   ++++
Sbjct: 352 YNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK 411

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                 +   +  +I  Y +A DVEKM E++  M+      +     T++ A
Sbjct: 412 VDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDA 463



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS---AYGQSGLLDEAFSTINDMK 176
           ++ M  K    E+A  +F  M+  G+  S   Y +L+S   +Y +        S I D  
Sbjct: 253 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKE-------VSKIYDQM 305

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             SD +PDV +Y++LIK+  +  R +    +  EM   G+  +   YN ++D +  +   
Sbjct: 306 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 365

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+ ++ F +M       PD+++  +M+SAY N+ ++E  EK++    + G + +I T   
Sbjct: 366 EQAKTVFKSM-RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 424

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L K Y +A   +KM  V + M+             +++  G+  +      ++K+M+  G
Sbjct: 425 LIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCG 484

Query: 357 MKPNSITYCSLVSAYS 372
           + P+      L+S  S
Sbjct: 485 VPPDQKAKNVLLSLAS 500



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+AYG  GN    E+  +  + MG   ++ +   L +SYGR G  +   ++   MQ   
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ +TY I+++TF +    ++ EE F+ +   K   +KP+   Y  ++  Y KAG   
Sbjct: 205 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 264

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           K   +   +    V   T  +N ++S      +V K   ++  M+     PD +++A +I
Sbjct: 265 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDIQPDVVSYALLI 321

Query: 439 QAYNALGMTEAAQNLENKMI 458
           +AY      E A ++  +M+
Sbjct: 322 KAYGRARREEEALSVFEEML 341



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           + + ++I  +GK G+    E     +   G  PN I+Y +L+ +Y + G     ++I R+
Sbjct: 140 IDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRR 199

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNA 443
           +++S        +  I+  + +    ++  E+F T+   K+    PD   +  MI  Y  
Sbjct: 200 MQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKK 259

Query: 444 LGMTEAAQNLENKMIA 459
            G  E A+ + + M+ 
Sbjct: 260 AGNYEKARKVFSSMVG 275


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 197/438 (44%), Gaps = 18/438 (4%)

Query: 26  FRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEAL 85
           FR+ AI  +P  ++ L   K     +  +LR    +  I    S   Y NL        L
Sbjct: 123 FRVDAITFTP-LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFS---YNNL--------L 170

Query: 86  DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSD 143
                + + Q AL++  ++   +   +     +   V+ G  K+   ++A   +  ML  
Sbjct: 171 KGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR 230

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-SILIKSCTKFHRFD 202
           G+ P V  Y+++++A  ++  +D+A   +N M   +   PD  TY SIL   C+     +
Sbjct: 231 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNSILHGYCSSGQPKE 289

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            I   L +M   G+E + VTY+++++   K  +  E    F +M + G   PDI T  ++
Sbjct: 290 AI-GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG-LEPDIATYRTL 347

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +  Y   G + +M    +     G++ D    NIL  +Y +    D+   V   M++   
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VV Y  VI+   K+G ++    YF++M   G+ PN I Y SL+          K + 
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      PD IT+ T+I    
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527

Query: 443 ALGMTEAAQNLENKMIAM 460
             G  + A  L   M+++
Sbjct: 528 LAGKMDEATKLLASMVSV 545



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 157/352 (44%), Gaps = 11/352 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
             F  L+    K ++ +QA L+F  M   GL P+V  Y  ++    +SG +D+A      
Sbjct: 377 HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQ 436

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P++  Y+ LI       ++D  E+++ EM   GI  + + +N+IID + K  
Sbjct: 437 MID-EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEG 495

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E E  F  MV  G   PDI T N++I     +G +++  K       +GVK DI T 
Sbjct: 496 RVIESEKLFDLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 554

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y R    D   ++   M      P ++TYNI+++           +E +  +  
Sbjct: 555 GTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITK 614

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGD 411
            G +    TY  ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G 
Sbjct: 615 SGTQLELSTYNIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +++  +LF        VPD  T++ M +     G  E    L++  ++M+EN
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLE---ELDDLFLSMEEN 720



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 157/372 (42%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ+K   A+ +F  +RQ          +  ++ +L K    + A L FE M+ +GL P++
Sbjct: 388 KQEKVDQAMLVFSKMRQHGL-NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VYT+L+         D+A   I +M     C                            
Sbjct: 447 IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KPD+ TY+ LI  C    + D   K+LA M  +G++   VTY T+I+GY +  +
Sbjct: 507 MVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR 566

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F  MV SG   P+I T N ++    ++      ++ Y      G + ++ T N
Sbjct: 567 MDDALALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYN 625

Query: 296 ILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           I+     +  + D+ +R   +         T  T+NI+I    K G +++ ++ F     
Sbjct: 626 IILHGLCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKCGRMDEAKDLFAAHSA 684

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ P+  TY  +     + G + ++D +   +E +    D+   N I+    Q GD+ +
Sbjct: 685 NGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITR 744

Query: 415 MGELFLTMKERH 426
            G     + E+H
Sbjct: 745 AGTYLFMIDEKH 756



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 203
           + P+V  Y  L+    ++G LD  F+ + ++      + D  T++ L+K  C      D 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK-KGFRVDAITFTPLLKGLCADKRTSDA 146

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNS 261
           ++ +L  M+ LG      +YN ++ G     + +E       M +   GG  PD+ + N+
Sbjct: 147 MDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++ +   G+ +K    Y+E    G+  D+ T + +  +  +A   DK   V++ M K  
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +TYN ++  +  +G  ++     KKM+  G++PN +TY SL++   K G   +  
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I   +    +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 158/343 (46%), Gaps = 7/343 (2%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 179 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             C PDV++Y+ L+K  C +    + +E   ++A+    G     V+YNT+++G+ K   
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  S++  M++  G  PD+ T +S+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 217 SDKAYSTYHEMLDR-GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   Y  +G   +    +  M+     P VVTY+ ++    K G   +  + F  M  R
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+  TY +L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +   V++ 
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M++    P+ + + T+I      G  + A     +MI
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMI 438



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 151/340 (44%), Gaps = 2/340 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T+  ++       QP++A    + M SDG++P+V  Y++L++   ++G   EA    +
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      +PD+ TY  L++          +  +L  M   GI+     +N +I  Y K 
Sbjct: 331 SMTK-RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQ 389

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +K ++    FS M +  G +P++    ++I     SG+++    ++ +    G+  +I  
Sbjct: 390 EKVDQAMLVFSKMRQH-GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIV 448

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L         +DK   ++  M  R      + +N +I++  K G + + E+ F  M 
Sbjct: 449 YTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 508

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KP+ ITY +L+     AG + +   +L  + +  V  D   +  +I+ Y +   ++
Sbjct: 509 RIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMD 568

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               LF  M      P+ IT+  ++Q       T AA+ L
Sbjct: 569 DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 178/387 (45%), Gaps = 8/387 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  +A K+F L+  ++ Y    + +T ++    +  + ++A  LF+ M   GL P++
Sbjct: 193 RESQHSIASKLFDLIPVEK-YSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTL 251

Query: 150 DVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  ++  YG+ G         +++M+S    + D +T S +I +C +    D   K L
Sbjct: 252 VTYNVMLDVYGKMGRSWGRILELLDEMRS-KGLEFDEFTCSTVISACGREGMLDEARKFL 310

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AE+   G +   V YN+++  +GKA  + E  S    M E   C PD  T N + + Y  
Sbjct: 311 AELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEM-EDNNCPPDSITYNELAATYVR 369

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G +++     +     GV  +  T   +  +YG+AG  D    +   M+     P V T
Sbjct: 370 AGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYT 429

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN V+   GK    E + +   +MK  G  PN  T+ ++++  S+ G    V+ +LR+++
Sbjct: 430 YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK 489

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           N     D   FN +IS+Y + G      +++  M +    P   T+  ++ A    G  +
Sbjct: 490 NCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWK 549

Query: 449 AA----QNLENKMIAMKENSGKKLIQC 471
           AA    Q+++ K     E S   L+ C
Sbjct: 550 AAESVIQDMQTKGFKPNETSYSLLLHC 576



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 172/383 (44%), Gaps = 10/383 (2%)

Query: 81  VLEALDEAIKQKKWQLALKIF--GLLR--QQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           +L+ALD +     W+ AL +F  G L     Q  +   Q    ++ +LG+  Q   AS L
Sbjct: 147 LLKALDLS---GNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKL 203

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F+++  +     V  YT ++ AY +SG    A    + M+ +    P + TY++++    
Sbjct: 204 FDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIG-LDPTLVTYNVMLDVYG 262

Query: 197 KFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           K  R +  I ++L EM   G+E    T +T+I   G+    +E    F A ++  G  P 
Sbjct: 263 KMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEAR-KFLAELKLNGYKPG 321

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
               NSM+  +G +G   +      E        D  T N L  +Y RAG  D+  +V+D
Sbjct: 322 TVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVID 381

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  +   P  +TY  VI+ +GKAG  +     F KMK  G  PN  TY S+++   K  
Sbjct: 382 TMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKS 441

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
               V  +L +++ +    +   +N +++   + G    + ++   MK     PD  TF 
Sbjct: 442 RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFN 501

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           T+I +Y   G    +  +  +M+
Sbjct: 502 TLISSYARCGSEVDSAKMYGEMV 524



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 171/399 (42%), Gaps = 42/399 (10%)

Query: 92  KKWQLALKIFGLLRQQ--QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W   L++   +R +  ++ +  C T   ++   G+    ++A      +  +G KP  
Sbjct: 266 RSWGRILELLDEMRSKGLEFDEFTCST---VISACGREGMLDEARKFLAELKLNGYKPGT 322

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y +++  +G++G+  EA S + +M+  ++C PD  TY+ L  +  +    D    ++ 
Sbjct: 323 VMYNSMLQVFGKAGIYTEALSILKEMED-NNCPPDSITYNELAATYVRAGFLDEGMAVID 381

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M+  G+  +A+TY T+ID YGKA + ++    FS M + G C P+++T NS+++  G  
Sbjct: 382 TMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLG-CAPNVYTYNSVLAMLGKK 440

Query: 270 GNIEKMEKWYNEFNL-----------------------------------MGVKADIQTL 294
              E + K   E  L                                    G + D  T 
Sbjct: 441 SRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTF 500

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  SY R G       +   M K  F P V TYN ++      G  +  E   + M+ 
Sbjct: 501 NTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQT 560

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G KPN  +Y  L+  YSKAG +  ++ + +++ +  V         ++ +  +   +  
Sbjct: 561 KGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRG 620

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           M   F  +++    PD +   +M+  ++   M   A+ +
Sbjct: 621 MERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREM 659



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 183/429 (42%), Gaps = 74/429 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   GK  + + A  LF  M   G  P+V  Y ++++  G+    ++    + +M
Sbjct: 394 TYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 453

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--- 232
           K ++ C P+  T++ ++  C++  + + + K+L EM   G E    T+NT+I  Y +   
Sbjct: 454 K-LNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGS 512

Query: 233 ----AKKFEEM-ESSFSAMV--------------------------ESGGCHPDIFTLNS 261
               AK + EM +S F+  V                          ++ G  P+  + + 
Sbjct: 513 EVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSL 572

Query: 262 MISAYGNSGN---IEKMEK----------W----------------------YNEFNLMG 286
           ++  Y  +GN   IEK+EK          W                      +++    G
Sbjct: 573 LLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYG 632

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            K D+  +N +   + R  M+ K R ++ F+ +    P + TYN +++ + +     K E
Sbjct: 633 YKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAE 692

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E  K +++   +P+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y
Sbjct: 693 EVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGY 752

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKE 462
                 ++  E+   M E +C P  +T+  ++  Y   G  E A +   K+    I+  +
Sbjct: 753 AGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDD 812

Query: 463 NSGKKLIQC 471
            S K+L  C
Sbjct: 813 KSVKRLGSC 821



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 261 SMISAYGNSGNIEKM-----EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           S++ A   SGN E+        W +  +   ++ D Q + ++ +  GR   +     + D
Sbjct: 146 SLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFD 205

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            +    +   V  Y  ++  + ++G  ++  + F KM+  G+ P  +TY  ++  Y K G
Sbjct: 206 LIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMG 265

Query: 376 LIM-KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
               ++  +L ++ +  +  D    + +ISA G+ G +++  +    +K     P  + +
Sbjct: 266 RSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMY 325

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
            +M+Q +   G+   A ++  +M
Sbjct: 326 NSMLQVFGKAGIYTEALSILKEM 348


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 144/316 (45%), Gaps = 1/316 (0%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           DG +P+ + YT L+S+    G L E    +  M+   +  PD   ++ L+    +  +  
Sbjct: 19  DGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEE-DNVIPDAIFFNTLLNGYCEAGKMK 77

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E ++ EM   G      +YNT+I GYG   + EE       M +     P+  T N +
Sbjct: 78  EAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNML 137

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I A+ +  N EK     +     GV  D+ + N L + + + G      +V+  MQ  + 
Sbjct: 138 IKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYL 197

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P   TY IVI  +  AG I++     ++MK  G+ P    +  LV  YS++    KVD 
Sbjct: 198 RPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDK 257

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + + +EN  V  D   F  I++A+   G +++   + L MKE    PD + ++ +++ Y+
Sbjct: 258 VFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYS 317

Query: 443 ALGMTEAAQNLENKMI 458
             G  E  +   N MI
Sbjct: 318 RQGRPEEGEAFLNIMI 333



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 153/331 (46%), Gaps = 3/331 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++  L+   G   QPE+A  L + M  D   KP+   +  L+ A+      ++A + I+ 
Sbjct: 97  SYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISM 156

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++     PDV +Y+ L +   K  +    E ++ EM  + +  +  TY  +I+GY  A 
Sbjct: 157 MRAAG-VGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAG 215

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E       M +  G  P I   N ++  Y  S    K++K +      GVK D+QT 
Sbjct: 216 QIDESLRLIERM-KMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTF 274

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            ++  ++   G+ D+ ++V+  M++    P V+ Y+I+++ + + G  E+ E +   M  
Sbjct: 275 GLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMID 334

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             +KPN ITY +++S Y     +     + +++ +  V  +   F  +I  + +A    +
Sbjct: 335 ENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRR 394

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALG 445
             E+   +++    PD      +   + ++G
Sbjct: 395 AEEILEYIRKAGFTPDLECIELVADCWRSIG 425



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 142/317 (44%), Gaps = 4/317 (1%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           GK K+ E  +L+ E M   G       Y  L+  YG  G  +EA   + +M    + KP+
Sbjct: 74  GKMKEAE--ALVLE-MKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPN 130

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             T+++LIK+       +    +++ M   G+    V+YNT+   + K  K  + E+  +
Sbjct: 131 DRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVIT 190

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M ++    P+  T   +I+ Y  +G I++  +      + G+   I   N L K Y  +
Sbjct: 191 EM-QNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSES 249

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
               K+  V   M+     P V T+ +++  +   G I++ +    +MK   ++P+ + Y
Sbjct: 250 MKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAY 309

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             LV  YS+ G   + ++ L  + + ++  +   +  +IS Y     ++    +F  M+ 
Sbjct: 310 SILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRS 369

Query: 425 RHCVPDNITFATMIQAY 441
           R   P+  TF T+I  +
Sbjct: 370 RSVFPNMQTFRTLIWGF 386



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%)

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G   ++    K ++  G +P   TY  L+S+    G + +   +L+Q+E  +VI D  FF
Sbjct: 4   GDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFF 63

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +++ Y +AG +++   L L MKER C     ++ T+I+ Y   G  E A  L  +M
Sbjct: 64  NTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEM 121



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G + ++RS +  +++    P   TY +++ +    G + +     ++M+   + P++I +
Sbjct: 4   GDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFF 63

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-K 423
            +L++ Y +AG + + ++++ +++     L T  +N +I  YG  G  E+  +L   M K
Sbjct: 64  NTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAK 123

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           + +  P++ TF  +I+A+      E A+N+ + M A
Sbjct: 124 DVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRA 159


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 160/377 (42%), Gaps = 68/377 (18%)

Query: 115 QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            ++T  +V+   C+  Q ++A  + +     G KP V VYT L  A+ ++G L +A    
Sbjct: 159 DSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF 218

Query: 173 NDMKSV---------------SDCK---------------PDVYTYSILIKSCTKFHRFD 202
            ++ S                +DC                PDV+TY+ILI    K  + D
Sbjct: 219 RNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTD 278

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              ++L EM   G+    VT+N+I+DG  KA KFE   S  + M E   C P   T N++
Sbjct: 279 KASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN-CRPSCCTYNTL 337

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           IS      N+++ +   +EF   G                                   F
Sbjct: 338 ISGLCKQQNVDRAKDLVDEFVSSG-----------------------------------F 362

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVTY+I+ +   K G I++  E  K+M  +G  PN +TY +L+    KA    K   
Sbjct: 363 VPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYE 422

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L  + +S  + D   +  I+    + G ++K  ++   M +R C P  IT+  +++   
Sbjct: 423 LLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLC 482

Query: 443 ALGMTEAAQNLENKMIA 459
             G  + A ++  +M++
Sbjct: 483 RTGRVDEAHHIFKEMVS 499



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 6/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + E+A  L E ++S G  P V  YT +V    + G LD+A   +  M
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 462

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P V TY+ L++   +  R D    I  EM        A+ Y ++++GY K+ +
Sbjct: 463 LK-RGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSR 521

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E +     +  +    P I   N+++  Y   G ++++   + +    G   +I+T N
Sbjct: 522 TKEAQKVVDGIRGT----PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYN 577

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     + G  D+    ++ M      P VV+YNI+I+   KA   ++  +   +M   
Sbjct: 578 IVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQA 637

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+++TY +L++ + K         IL+ +  + V  D   +N +IS   Q   +   
Sbjct: 638 GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 697

Query: 416 GELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKM 457
            EL   M    CV     T+ T+I      G  + A  L + M
Sbjct: 698 YELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 740



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 160/357 (44%), Gaps = 6/357 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  K++ A  +  ++ ++   +  C T+  L+  L K +  ++A  L +  +S G
Sbjct: 303 MDGLCKAGKFERAHSLLAVMAERNC-RPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSG 361

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V  Y+ L     + G +DEAF  + +M S   C P++ TY+ LI    K  + +  
Sbjct: 362 FVPDVVTYSILADGLCKRGRIDEAFELVKEM-SGKGCTPNLVTYNTLIDGLCKASKTEKA 420

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L  +   G     VTY  I+DG  K  + ++       M++ G C P + T  +++ 
Sbjct: 421 YELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG-CTPSVITYTALME 479

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +G +++    + E       AD      L   Y ++    + + V+D ++     P
Sbjct: 480 GLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---P 536

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  YN +++ + K G ++++   F+ M  RG  PN  TY  ++    K G + +    L
Sbjct: 537 YIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 596

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             + ++  + D   +N II    +A   ++  ++   M +    PD +T+ T++  +
Sbjct: 597 ESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 653



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 154/340 (45%), Gaps = 9/340 (2%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +M G CK+   ++   +FE M   G  P++  Y  ++    + G +DEAF  +  M S  
Sbjct: 544 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 603

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C PDV +Y+I+I    K  +     ++L +M   GI   AVTYNT++  + K ++F++ 
Sbjct: 604 -CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDA 662

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILT 298
                 M+++G   PD  T N++IS    +  +    +  +E    G V +   T N + 
Sbjct: 663 VGILKNMIKAG-VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 721

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               + G   +   +MD M         VTYNI I+   K G +++      +M      
Sbjct: 722 DRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD---TL 778

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            + ++Y +++    KA  + +   + R+ V    + + +  FN +I A+ +   +++   
Sbjct: 779 RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALT 838

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           L   M +R C P  IT+  +I     L   + A  L ++M
Sbjct: 839 LLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 878



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 95  QLALKIFGLL--------RQQQWYQARCQTFTKLMV--MLGKCKQPEQASLLFEVMLSDG 144
           Q  L + GLL        R +QW      T    +V  +L + K P+ A + F      G
Sbjct: 65  QDVLDLLGLLQSGSNIRERLEQWRG----TLQPAVVSRVLQRLKDPQTAIVFFVWAGDRG 120

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            K S       +    ++G  D   +    M       PD YTY ++IKS  + ++ D  
Sbjct: 121 FKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGY-APDSYTYHLVIKSLCQMNQIDKA 179

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L +    G +     Y  +   + K  + ++    F  +       PD    N++I 
Sbjct: 180 FTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS-----PDAIAYNAIIH 234

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +    + +   ++  E N   V  D+ T NIL     +A   DK   ++  M  R   P
Sbjct: 235 GHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTP 294

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VT+N +++   KAG  E+       M  R  +P+  TY +L+S   K   + +   ++
Sbjct: 295 DTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLV 354

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            +  +S  + D   ++ +     + G +++  EL   M  + C P+ +T+ T+I      
Sbjct: 355 DEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKA 414

Query: 445 GMTEAAQNLENKMIA 459
             TE A  L   +++
Sbjct: 415 SKTEKAYELLESLVS 429



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 125/281 (44%), Gaps = 5/281 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM    K ++ + A  + + M+  G+ P    Y  L+S   Q+  L +A+  +++M
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 704

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                      TY+ +I    K         ++  M+  G+E + VTYN  ID   K  +
Sbjct: 705 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGR 764

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTL 294
            +E  S  S M        D  +  ++I     +  +++  K   E   + G+     T 
Sbjct: 765 LDEASSLLSEM----DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTF 820

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N+L  ++ +    D+  +++  M +R   P+V+TYN+VI    K   ++K  E F +M  
Sbjct: 821 NLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAV 880

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           RG+  +S++Y  L+      G   +   +L ++ +SD  +D
Sbjct: 881 RGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEID 921


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+ AY + GLL+EAF  +N M      KP ++TY+ +I    K  R+   + IL EM
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             +G+     TYNT++    +   F E +  F  M+  G   PD+ + +S+++ +  + +
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLMAVFSRNRH 121

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +++   ++ +    G+  D     +L   Y R G   +   + D M ++     V+ YN 
Sbjct: 122 LDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 181

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++    K   +   ++ F +M  RG  P+  T+ +L+  + + G + K  S+   +   +
Sbjct: 182 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 241

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +  D   +N +I  + + G++EK  EL+  M  R   P++IT+  +I AY ++G    A 
Sbjct: 242 IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAF 301

Query: 452 NLENKMI 458
            L + MI
Sbjct: 302 RLWDVMI 308



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 4/290 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+V   +     +A  +F  ML  G+ P +  +++L++ + ++  LD+A     DM
Sbjct: 73  TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDM 132

Query: 176 KSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           K      PD   Y++L+   C   +  + + KI  EM   G     + YNTI++G  K K
Sbjct: 133 KKFG-LVPDNVIYTVLMHGYCRNGNMLEAL-KIRDEMLEQGCVLDVIAYNTILNGLCKEK 190

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              + +  F  MVE G   PD +T  ++I  +   GN+ K    +       +K DI   
Sbjct: 191 MLTDADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAY 249

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   + + G  +K   + D M  R  FP  +TY I+I  +   GH+ +    +  M  
Sbjct: 250 NTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIE 309

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
           +G+KP  +T  +++  Y ++G   K D  L ++    V  D   +N +I+
Sbjct: 310 KGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 37/344 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 189
           E+A  +   M   GLKPS+  Y A+++   + G    A   + +M ++    PD  TY +
Sbjct: 18  EEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG-LSPDTTTYNT 76

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
           +L++SC +   F   ++I  EM   G+    V++++++  + + +  ++    F  M + 
Sbjct: 77  LLVESCRR-DNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKF 135

Query: 250 G----------------------------------GCHPDIFTLNSMISAYGNSGNIEKM 275
           G                                  GC  D+   N++++       +   
Sbjct: 136 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDA 195

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           +K ++E    G   D  T   L   + + G   K  S+   M +R   P +V YN +I+ 
Sbjct: 196 DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 255

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           F K G +EK  E +  M  R + PN ITY  L++AY   G + +   +   +    +   
Sbjct: 256 FCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPT 315

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
               N +I  Y ++GD  K  E    M  +   PD+I++ T+I 
Sbjct: 316 LVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 2/230 (0%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTYNT+I  Y +    EE     ++M +  G  P +FT N++I+     G   + +    
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADK-GLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E   +G+  D  T N L     R   + + + +   M ++   P +V+++ ++  F +  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           H+++   YF+ MK  G+ P+++ Y  L+  Y + G +++   I  ++     +LD   +N
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA 449
            I++   +   +    +LF  M ER  +PD  TF T+I  +   G MT+A
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKA 230



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 62/117 (52%)

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           +VTYN +I  + + G +E+  E    M  +G+KP+  TY ++++   K G   +   IL 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++ N  +  DT  +N ++    +  +  +  E+F  M  +  VPD ++F++++  ++
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFS 117


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +  V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSXGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  XKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L+    +C +   A      M+  G +PS+  + +LV+ +     + EA S ++ +
Sbjct: 110 SFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI 169

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   +P+V  Y+ +I S  +  + D    +L  M  +GI    +TYN++I     + K
Sbjct: 170 VGLG-YEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGK 228

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +       S M+  G  HPD+ T ++MI  +G  G + + +K Y+E     V  +I T N
Sbjct: 229 WGVSARILSDMMRMG-IHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYN 287

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L       G+ D+ + V++FM  + FFP  VTYN ++  + K+  ++   +    M H 
Sbjct: 288 SLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHD 347

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  ++ TY +L   Y +AG     + +L ++ +  V+ D   FN ++    + G +EK 
Sbjct: 348 GVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKA 407

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
                 +++   V   IT+  +I+ 
Sbjct: 408 LVKLEDLQKSETVVGIITYNIIIKG 432



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 165/368 (44%), Gaps = 3/368 (0%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           E L   +   K+  AL +F  + + +   +    F++L+V + K K+ E    LF  +  
Sbjct: 43  ERLRSGLHSIKFNDALTLFCDMAESRPLPSIVD-FSRLLVAIAKLKKYEAVISLFRHIEI 101

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            G+   +  ++ L+  + +   L  A S +  M  +   +P + T+  L+      +R  
Sbjct: 102 LGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLG-FEPSIVTFGSLVNGFCHVNRIQ 160

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               ++ ++  LG E + V YNTIID   + ++ +      + M E  G  PD+ T NS+
Sbjct: 161 EAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHM-EKMGIRPDVITYNSL 219

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I+   +SG      +  ++   MG+  D+ T + +   +G+ G   + +   D M +R  
Sbjct: 220 ITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSV 279

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P +VTYN +I      G +++ ++    M  +G  PN++TY +LV+ Y K+  +     
Sbjct: 280 DPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMK 339

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           IL  + +  V  DT  +N +   Y QAG      ++   M     +PD  TF  ++    
Sbjct: 340 ILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLC 399

Query: 443 ALGMTEAA 450
             G  E A
Sbjct: 400 EHGKIEKA 407



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 168/373 (45%), Gaps = 3/373 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   +  +  LAL   G +  +  ++    TF  L+       + ++A  L + ++  G
Sbjct: 115 IDCFCRCSRLSLALSCLGKM-MKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLG 173

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P+V +Y  ++ +  ++  +D A   +N M+ +   +PDV TY+ LI       ++ + 
Sbjct: 174 YEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMG-IRPDVITYNSLITRLFHSGKWGVS 232

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +IL++M  +GI    +T++ +ID +GK  +  E +  +  M++     P+I T NS+I+
Sbjct: 233 ARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS-VDPNIVTYNSLIN 291

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G +++ +K  N     G   +  T N L   Y ++   D    ++  M       
Sbjct: 292 GLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDG 351

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
              TYN + + + +AG     E+   +M   G+ P+  T+  L+    + G I K    L
Sbjct: 352 DTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKL 411

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             ++ S+ ++    +N II    +A  VE    LF ++  +   PD IT+ TM+      
Sbjct: 412 EDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRK 471

Query: 445 GMTEAAQNLENKM 457
            +   A  L  KM
Sbjct: 472 RLWLEAHELYRKM 484



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 131/276 (47%), Gaps = 1/276 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+Y++S LI    +  R  L    L +M  LG E S VT+ ++++G+    + +E  S  
Sbjct: 107 DLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLV 166

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             +V   G  P++   N++I +   +  ++      N    MG++ D+ T N L      
Sbjct: 167 DQIV-GLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFH 225

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G +     ++  M +    P V+T++ +I+ FGK G + + ++ + +M  R + PN +T
Sbjct: 226 SGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVT 285

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y SL++     GL+ +   +L  + +     +   +N +++ Y ++  V+   ++   M 
Sbjct: 286 YNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMS 345

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
                 D  T+ T+ Q Y   G   AA+ +  +M++
Sbjct: 346 HDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVS 381



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 2/276 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    +   ++ +   M+  G+ P V  ++A++  +G+ G L EA    ++M
Sbjct: 215 TYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEM 274

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   P++ TY+ LI         D  +K+L  M   G   +AVTYNT+++GY K+K+
Sbjct: 275 IQRS-VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKR 333

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       M   G    D FT N++   Y  +G     EK        GV  DI T N
Sbjct: 334 VDDAMKILCVMSHDG-VDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFN 392

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L       G  +K    ++ +QK      ++TYNI+I+   KA  +E     F  +  +
Sbjct: 393 MLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALK 452

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           G+ P+ ITY +++    +  L ++   + R+++  D
Sbjct: 453 GVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKKDD 488



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 6/167 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKP 147
           K K+   A+KI  ++           TFT   +  G C+  Q   A  +   M+S G+ P
Sbjct: 330 KSKRVDDAMKILCVMSHDG---VDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLP 386

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  +  L+    + G +++A   + D++  S+    + TY+I+IK   K ++ +    +
Sbjct: 387 DIYTFNMLLDGLCEHGKIEKALVKLEDLQK-SETVVGIITYNIIIKGMCKANKVEDAWYL 445

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
              ++  G+    +TY T++ G  + + + E    +  M +  G  P
Sbjct: 446 FCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKKDDGLMP 492


>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
 gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 723

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 154/307 (50%), Gaps = 3/307 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +FE M   G+K S DV+  LV ++   GL +EA     +M+     + +   Y+ L+ + 
Sbjct: 331 IFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAY 389

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K +  + +E +  EM   G++ SA TYN ++D Y +  + + +E+    M E  G  P+
Sbjct: 390 NKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPN 448

Query: 256 IFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           + +   +ISAYG +  +  M    +     +G+K    +   L  +Y  +G ++K  +  
Sbjct: 449 VKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASF 508

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M K    P+V TY  V++ F ++G   K+ E +K M    +K   ITY +L+  ++K 
Sbjct: 509 EEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQ 568

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           GL ++   ++ +     +      +N +++AY + G   K+ +L   M   +  PD+IT+
Sbjct: 569 GLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITY 628

Query: 435 ATMIQAY 441
           +TMI A+
Sbjct: 629 STMIYAF 635



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 151/304 (49%), Gaps = 1/304 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A ++   M   G++ +  VY  L+ AY +S  ++E      +M+     KP   TY+I
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRD-KGLKPSAATYNI 419

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+ +  +  + D++E +L EM  LG+E +  +Y  +I  YG+ KK  +M +     ++  
Sbjct: 420 LMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKV 479

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P   +  ++I AY  SG  EK    + E    G+K  ++T   +  ++ R+G   K+
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL 539

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M +     T +TYN +++ F K G   +  +   +    G++P+ +TY  L++A
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNA 599

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y++ G   K+  +L+++   ++  D+  ++ +I A+ +  D ++       M +   VPD
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659

Query: 431 NITF 434
             ++
Sbjct: 660 PRSY 663



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 155/329 (47%), Gaps = 15/329 (4%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEAL-----DEAIKQKKWQLALKIFGLLR 105
           L K  R+   +  I +K+S K  K  W + V   L     DE +K++   +  ++     
Sbjct: 318 LRKAGRSAKEVWEIFEKMSEKGVK--WSQDVFGGLVKSFCDEGLKEEALVIQTEM----- 370

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +++  ++    +  LM    K    E+   LF  M   GLKPS   Y  L+ AY +    
Sbjct: 371 EKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQP 430

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-DLIEKILAEMSYLGIECSAVTYN 224
           D   + + +M+ +   +P+V +Y+ LI +  +  +  D+       M  +G++ S+ +Y 
Sbjct: 431 DIVETLLREMEDLG-LEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYT 489

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I  Y  +   E+  +SF  M +  G  P + T  S++ A+  SG+  K+ + +     
Sbjct: 490 ALIHAYSVSGWHEKAYASFEEMCKE-GIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLR 548

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
             +K    T N L   + + G+Y + R V+    K    P+V+TYN+++  + + G   K
Sbjct: 549 EKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAK 608

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           + +  K+M    +KP+SITY +++ A+ +
Sbjct: 609 LPQLLKEMAALNLKPDSITYSTMIYAFVR 637



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 152/336 (45%), Gaps = 4/336 (1%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L  +LG+ +  +   LL   +        V +Y A +S    S   D+A+     M  + 
Sbjct: 244 LFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKI- 302

Query: 180 DCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +  PD  T +ILI +  K  R    + +I  +MS  G++ S   +  ++  +   +  +E
Sbjct: 303 NVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCD-EGLKE 361

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                   +E  G   +    N+++ AY  S +IE++E  + E    G+K    T NIL 
Sbjct: 362 EALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILM 421

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME-EYFKKMKHRGM 357
            +Y R    D + +++  M+     P V +Y  +I  +G+   +  M  + F +MK  G+
Sbjct: 422 DAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGL 481

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           KP+S +Y +L+ AYS +G   K  +   ++    +      +  ++ A+ ++GD  K+ E
Sbjct: 482 KPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLME 541

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++  M         IT+ T++  +   G+   A+++
Sbjct: 542 IWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDV 577


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 485 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 540

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      P+ YTY  +I    K  R D   K+  EM   G ++  AV YN +I GY    
Sbjct: 541 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 600

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +        MVE G     + T N ++ A    G   +  +   E    G+  D+ T 
Sbjct: 601 KLDTALLYRDRMVERGVAM-TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 659

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NIL   + + G   K   + + M +R    TVVTY  +I    K G +++ ++ F +   
Sbjct: 660 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 719

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG++P+ + Y +L++++S +G I +   I+ ++E   +  D   +N ++      G V++
Sbjct: 720 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 779

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +L   M ER   PD +T+ T+I  Y+  G  + A  + N+M+
Sbjct: 780 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 823



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 13/376 (3%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL I   +R++        T+  ++    K  + ++A  +F+ ML+ G +KP  
Sbjct: 527 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 586

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL+  Y   G LD A     D          V TY++L+ +     R     +++ 
Sbjct: 587 VMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE 645

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+     TYN +I+G+ K    ++    F  M   G     + T  ++I A    
Sbjct: 646 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG-VRATVVTYTALIYALSKK 704

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++ +K ++E    G++ D+   N L  S+  +G  D+   +M  M+K+   P  VTY
Sbjct: 705 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 764

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++      G +++  +   +M  RG++P+ +TY +L+S YS  G +     I  ++ N
Sbjct: 765 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 824

Query: 390 SDVILDTPFFNCIISAY---GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
                    +N +I      GQ  D E M      M E    PD+ T+ ++I+       
Sbjct: 825 KGFNPTLLTYNALIQGLCKNGQGDDAENM---VKEMVENGITPDDSTYISLIEGLT---- 877

Query: 447 TEAAQNLENKMIAMKE 462
           TE  + ++++ +A  +
Sbjct: 878 TEDERAIDDERLAAAD 893


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG   +  +A  LF E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 262 RSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQV 321

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +++M S     PD  TYS+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+ 
Sbjct: 322 LDEM-SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 380

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
               +++  +    M ++ G  PD    N MI  +G    +      +N+    G++ D+
Sbjct: 381 DRGDWQKAFAVLREM-QASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDV 439

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L  ++ + G +D+   + + M++    P   TYNI+I   G+  H E +E    +
Sbjct: 440 VTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSE 499

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSDVILDTP-FFNCIISAYGQA 409
           MK +G+ PN ITY +LV  Y ++G   + +D I  +   +D +  +P  ++ +++AY Q 
Sbjct: 500 MKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCI--EAMKADGLKPSPTMYHALVNAYAQR 557

Query: 410 G 410
           G
Sbjct: 558 G 558



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 163/361 (45%), Gaps = 2/361 (0%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++ G LR+ +  +     F+ L+    +   P+ A  L     + GL P  +  TAL+SA
Sbjct: 214 RLLGDLRESR-LEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
            G +G + EA +   +     + KP    Y+ L+K   +       E++L EMS  G+  
Sbjct: 273 LGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAP 332

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TY+ ++D Y +A ++E        M E+ G  P  +  + +++ + + G+ +K    
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    GV+ D    N++  ++G+           + M++    P VVT+N +I+   K
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCK 451

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  ++  E F++M+     P + TY  +++   +      V+++L +++   ++ +   
Sbjct: 452 GGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIIT 511

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++  YG++G  ++  +    MK     P    +  ++ AY   G+ + A N+   M 
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571

Query: 459 A 459
           A
Sbjct: 572 A 572



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 155/320 (48%), Gaps = 10/320 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 336 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM 395

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           ++ S  +PD + Y+++I +  K+    H  D   K+  E    GIE   VT+NT+ID + 
Sbjct: 396 QA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREE----GIEPDVVTWNTLIDAHC 450

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C P   T N MI+  G   + E +E   +E    G+  +I
Sbjct: 451 KGGRHDRAAELFEEMRESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G Y +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G++ + +   SL++A+ +   +++  S+L+ +  + +  D   +  ++ A  +   
Sbjct: 570 MKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQ 629

Query: 412 VEKMGELFLTMKERHCVPDN 431
            +K+  ++  M    C PD 
Sbjct: 630 FDKVPVIYEEMITSGCAPDR 649



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 43/322 (13%)

Query: 180 DCKPDVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 295
            +      A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K Y R G       V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 408
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 409 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-- 481

Query: 441 YNALGMTEAAQNLENKMIAMKE 462
            N LG  E  + +E  +  MKE
Sbjct: 482 -NLLGEQEHWEGVEAMLSEMKE 502


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 155/332 (46%), Gaps = 4/332 (1%)

Query: 127 CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+     A L+F  +   GL+P+   +  L++   +S  LDE F     M+  +   PD
Sbjct: 234 CKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE-NRIYPD 292

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V+TYS+LI    K  R D+ E++  EM   G+  + +T+  +IDG  ++++ +   +++ 
Sbjct: 293 VFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYH 352

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+ + G  PD+   N++++     G++ K  K  +E  ++G+K D  T   L   Y + 
Sbjct: 353 QML-TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKE 411

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G  +    +   M +       V +  +I  F + G +   E   ++M   GMKP+  TY
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             ++  Y K G +     +L++++ +        +N +++   + G ++    L   M  
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
               PD+IT+  +++ +   G  E    L N+
Sbjct: 532 LGVTPDDITYNILLEGHCKNGKAEDLLKLRNE 563



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 151/373 (40%), Gaps = 38/373 (10%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
            L   Q +Q  CQ+  + +V   +  +   AS+   ++ + G + S  V+ AL+ AY  S
Sbjct: 110 FLSAHQMFQ-ECQSIIRFLV--SRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDS 166

Query: 163 GLLDEAFST-----------------------INDMKSVS-----------DCKPDVYTY 188
           G + +A                          IN    V+              P V  Y
Sbjct: 167 GFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYY 226

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +ILI    K       + I  E+   G+  + V++NT+I+G  K++  +E        +E
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE-GFRLKKTME 285

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
               +PD+FT + +I      G ++  E+ ++E    G++ +  T   L     R+   D
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRID 345

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              +    M      P +V YN ++    K G + K  +   +M+  GMKP+ ITY +L+
Sbjct: 346 SAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLI 405

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             Y K G +     I + +    V+LD   F  +IS + + G V         M E    
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMK 465

Query: 429 PDNITFATMIQAY 441
           PD+ T+  +I  Y
Sbjct: 466 PDDATYTMVIDGY 478



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 6/285 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ +  +A ++F  + QQ+  +    TFT L+    + ++ + A   +  ML+ G+KP +
Sbjct: 305 KEGRLDVAEQLFDEM-QQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDL 363

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y  L++   + G +++A   +++M+ V   KPD  TY+ LI    K    +   +I  
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEMRMVG-MKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M+  G+    V +  +I G+ +  +  + E +   MVE+G   PD  T   +I  Y   
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG-MKPDDATYTMVIDGYCKK 481

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN++   K   E  + G K  + T N+L     + G       +++ M      P  +TY
Sbjct: 482 GNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           NI++E   K G   K E+  K    +G+  +   Y SLVS Y+K+
Sbjct: 542 NILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +   S F+A++++ G     F  ++++ AY +SG +    + +           ++  N 
Sbjct: 134 DSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRL---------VRNSNF 184

Query: 297 LTKSYGRAGMYDKM------RSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEE 347
               +G   + DKM       ++  F  +     F P V  YNI+I  F K G I   + 
Sbjct: 185 QIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKL 244

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F +++ RG++P ++++ +L++   K+  + +   + + +E + +  D   ++ +I    
Sbjct: 245 IFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLC 304

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           + G ++   +LF  M++R   P+ ITF  +I         ++A N  ++M+ M
Sbjct: 305 KEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTM 357


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 193/428 (45%), Gaps = 51/428 (11%)

Query: 44  QKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKP---VLEALDEAIKQKKWQLALKI 100
           QK   + +++I  +  A+  ++ + S+K+     P P   VL  L    + KKW L  +I
Sbjct: 73  QKNWRRMMNEIEESGSAVSILKTQRSTKE-----PLPRDAVLGTLVRFKQLKKWNLVSEI 127

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
              LR Q W+      F  L+   GK     +A  + + M   G +P+V   TAL+ AYG
Sbjct: 128 LEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYG 187

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--------DLI-------- 204
           ++    +A +  + M++ S  +P   TY I++KS  +  ++        DL+        
Sbjct: 188 RAKQYRKAEAVFHRMQT-SGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFK 246

Query: 205 ----------------------EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
                                  K+ A+MS  GI  S VT+N+++   G  K+     SS
Sbjct: 247 PDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSLMSFEGDYKEV----SS 302

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++  G  PD+ + + +I AYG +   E+    + E    G++   ++ NIL  ++ 
Sbjct: 303 IYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFA 362

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            +G+ ++ ++V   M++    P + +Y  ++  +  A  ++  E++F+++K  G++PN +
Sbjct: 363 ISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVV 422

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y +L+  YSK   + KV  +  ++    V  +   F  I+  +G+  D       F  M
Sbjct: 423 VYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEM 482

Query: 423 KERHCVPD 430
           + R   PD
Sbjct: 483 ETRGYPPD 490



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++AYG  G+  + E+     N  G +  + +   L ++YGRA  Y K  +V   MQ   
Sbjct: 147 LVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSG 206

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ +TY I++++  +    ++ E  F+ +   K    KP+   +  ++  Y K+G   
Sbjct: 207 PEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYA 266

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  Q+    +   T  FN ++S     GD +++  ++  M+     PD ++++ +I
Sbjct: 267 QARKLFAQMSERGIPQSTVTFNSLMSF---EGDYKEVSSIYDQMQRAGLKPDVVSYSLLI 323

Query: 439 QAYNALGMTEAAQNLENKMI 458
           +AY      E A  +  +M+
Sbjct: 324 KAYGKARREEEASAVFEEML 343



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 6/244 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K   +  A K+F  + ++   Q+   TF  LM   G  K+    S +++ M   GLKP V
Sbjct: 261 KSGDYAQARKLFAQMSERGIPQSTV-TFNSLMSFEGDYKE---VSSIYDQMQRAGLKPDV 316

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L+ AYG++   +EA +   +M      +P   +Y+IL+ +       +  + +  
Sbjct: 317 VSYSLLIKAYGKARREEEASAVFEEMLDAG-IRPTRKSYNILLDAFAISGLVEEAQTVFK 375

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M    +E    +Y T++  Y  A   +  E  F  + E G   P++    +++  Y   
Sbjct: 376 TMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDG-LRPNVVVYGTLMKGYSKL 434

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
            N+EK+ + Y    + GV+ +      +   +GR   +       + M+ R + P     
Sbjct: 435 DNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAK 494

Query: 330 NIVI 333
           NI++
Sbjct: 495 NILL 498


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 8/352 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   LR Q W+      F  L+   GK      A  +  V+   G  P+V  
Sbjct: 60  KKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVIS 119

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI---L 208
           YTAL+ +YG+ G  + A +    M+S S  +P   TY I++K+  +  +F   E++   L
Sbjct: 120 YTALMESYGRGGKCNNAEAIFRRMQS-SGPEPSAITYQIILKTFVEGDKFKEAEEVFETL 178

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +     ++     Y+ +I  Y KA  +E+    FS+MV  G     + T NS++S   +
Sbjct: 179 LDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLMSFETS 237

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              + K+   Y++     ++ D+ +  +L K+YGRA   ++  SV + M      PT   
Sbjct: 238 YKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKA 294

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+++ F  +G +E+ +  FK M+   + P+  +Y +++SAY  A  +   +   ++++
Sbjct: 295 YNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK 354

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                 +   +  +I  Y +A DVEKM E++  M+      +     T++ A
Sbjct: 355 VDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDA 406



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS---AYGQSGLLDEAFSTINDMK 176
           ++ M  K    E+A  +F  M+  G+  S   Y +L+S   +Y +        S I D  
Sbjct: 196 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKE-------VSKIYDQM 248

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             SD +PDV +Y++LIK+  +  R +    +  EM   G+  +   YN ++D +  +   
Sbjct: 249 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 308

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+ ++ F +M       PD+++  +M+SAY N+ ++E  EK++    + G + +I T   
Sbjct: 309 EQAKTVFKSM-RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 367

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L K Y +A   +KM  V + M+             +++  G+  +      ++K+M+  G
Sbjct: 368 LIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCG 427

Query: 357 MKPNSITYCSLVSAYS 372
           + P+      L+S  S
Sbjct: 428 VPPDQKAKNVLLSLAS 443



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+AYG  GN    E+  +  + MG   ++ +   L +SYGR G  +   ++   MQ   
Sbjct: 88  LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 147

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ +TY I+++TF +    ++ EE F+ +   K   +KP+   Y  ++  Y KAG   
Sbjct: 148 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 207

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           K   +   +    V   T  +N ++S      +V K   ++  M+     PD +++A +I
Sbjct: 208 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDIQPDVVSYALLI 264

Query: 439 QAYNALGMTEAAQNLENKMI 458
           +AY      E A ++  +M+
Sbjct: 265 KAYGRARREEEALSVFEEML 284



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           + + ++I  +GK G+    E     +   G  PN I+Y +L+ +Y + G     ++I R+
Sbjct: 83  IDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRR 142

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNA 443
           +++S        +  I+  + +    ++  E+F T+   K+    PD   +  MI  Y  
Sbjct: 143 MQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKK 202

Query: 444 LGMTEAAQNLENKMIA 459
            G  E A+ + + M+ 
Sbjct: 203 AGNYEKARKVFSSMVG 218


>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           velutina]
          Length = 382

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 24  AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 82

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 83  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 141

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 142 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 258

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 259 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVK 314

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  ++    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 315 DITVFERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 374

Query: 455 NKM 457
            +M
Sbjct: 375 MEM 377



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 142

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFER 321

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      IV+  +GK    +K  + + +M+  G
Sbjct: 322 MVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 163/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 24  AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 82

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 83  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 141

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 142 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKXGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 258

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 259 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
               F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 315 XITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 374

Query: 455 NKM 457
            +M
Sbjct: 375 MEM 377



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 77/181 (42%), Gaps = 6/181 (3%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  +    T++ ++ + GK  + ++A++LF+ + S G++    ++  ++ AY ++GL+
Sbjct: 207 QSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 266

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   ++++K     +PD       I       R +    +  +    G       +  
Sbjct: 267 AHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVFER 321

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I    K KK+  +   F  M    G  PD   +  +++AYG     +K    Y E   +
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKM-RGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEV 380

Query: 286 G 286
           G
Sbjct: 381 G 381


>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 622

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 166/357 (46%), Gaps = 2/357 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L+    QK ++    I  L+ ++Q  +   + F  L+    +    E A  + + M   G
Sbjct: 172 LNALTTQKYFKPIHSIVSLVEEKQ-MKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESG 230

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LKPS   Y  L+  YG +G  DE+   ++ M    + KP++ T ++LI++  K       
Sbjct: 231 LKPSACTYNTLIKGYGIAGKPDESIKLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEA 290

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             ++ +M+  G++   V++NT+   Y +  K  ++E+    M    G  P+  T   +IS
Sbjct: 291 WNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEM-RRNGLKPNDRTCTIIIS 349

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            Y   G + +  ++      +G++ ++  LN L   +      D +  V++ M++ +  P
Sbjct: 350 GYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRP 409

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V+TY+ ++  + +AG +EK +E +  M   G+KP+   Y  L   Y +A  + K + +L
Sbjct: 410 DVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELL 469

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +  S V  +   F  ++S +   G ++    +F  M E    P+  TF T+I  Y
Sbjct: 470 TVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGY 526



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 171/345 (49%), Gaps = 13/345 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q+ TK+M +L K  +P++A ++F+ ++  G +PS+  YT L++A           S ++ 
Sbjct: 131 QSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSL 190

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++     KPD   ++ L+ +  +F   +  +K++ +M   G++ SA TYNT+I GYG A 
Sbjct: 191 VEE-KQMKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAG 249

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVK 288
           K +E       M   G   P++ T N +I A      + KME     +N++      G++
Sbjct: 250 KPDESIKLLDLMSIEGNVKPNLKTCNMLIRA------LCKMEHTSEAWNVVYKMTTSGMQ 303

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ + N +  SY + G   ++ +++  M++    P   T  I+I  + + G + +   +
Sbjct: 304 PDVVSFNTVAISYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRF 363

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             ++K  G++PN I   SLV+ +        V+ +L  +E   +  D   ++ I++A+ Q
Sbjct: 364 VYRIKDLGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQ 423

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           AG +EK  E++  M +    PD   ++ + + Y      E A+ L
Sbjct: 424 AGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEEL 468



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 152/327 (46%), Gaps = 2/327 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           ++K+  L+  +   +   +T   L+  L K +   +A  +   M + G++P V  +  + 
Sbjct: 254 SIKLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVA 313

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +Y Q+G   +  + I +M+  +  KP+  T +I+I    +  +     + +  +  LG+
Sbjct: 314 ISYAQNGKTVQVEAMILEMRR-NGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGL 372

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + +  N++++G+      + +    + M E     PD+ T +++++A+  +G +EK +
Sbjct: 373 QPNLIILNSLVNGFVDTMDRDGVNEVLNLM-EEFYIRPDVITYSTIMNAWSQAGFLEKCK 431

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + YN     GVK D    +IL K Y RA   +K   ++  M K    P VV +  V+  +
Sbjct: 432 EIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGW 491

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G ++     F KM   G+ PN  T+ +L+  Y++A    K + +L+ +E   V    
Sbjct: 492 CSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKK 551

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMK 423
                +  A+  AG  E    L +T+K
Sbjct: 552 STILLVAEAWCFAGLKEGAKTLLITVK 578



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 120/283 (42%), Gaps = 2/283 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q    +F  + +   +  +  Q   +   M  +GLKP+    T ++S Y + G + EA  
Sbjct: 303 QPDVVSFNTVAISYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALR 362

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            +  +K +   +P++   + L+         D + ++L  M    I    +TY+TI++ +
Sbjct: 363 FVYRIKDLG-LQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAW 421

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +A   E+ +  ++ M++SG   PD    + +   Y  +  +EK E+        GV+ +
Sbjct: 422 SQAGFLEKCKEIYNNMLKSG-VKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPN 480

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +     +   +   G  D    V D M +    P + T+  +I  + +A    K E   +
Sbjct: 481 VVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQ 540

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
            M+   ++P   T   +  A+  AGL     ++L  V+   +I
Sbjct: 541 IMEEFHVQPKKSTILLVAEAWCFAGLKEGAKTLLITVKTEKMI 583


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 2/348 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           +Q    T+  ++  L K      A  LF  M    +K SV  Y+ ++ +  + G  D+A 
Sbjct: 235 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 294

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           S  N+M+ +   K DV TYS LI       ++D   K+L EM    I    VT++ +ID 
Sbjct: 295 SLFNEME-MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 353

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K  K  E +  ++ M+ + G  PD  T NS+I  +     + +  + ++     G + 
Sbjct: 354 FVKEGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 412

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           DI T +IL  SY +A   D    +   +  +   P  +TYN ++  F ++G +   +E F
Sbjct: 413 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 472

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  RG+ P+ +TY  L+      G + K   I  +++ S + L    +N II     A
Sbjct: 473 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 532

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             V+    LF ++ ++   PD +T+  MI      G    A  L  KM
Sbjct: 533 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 580



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 10/364 (2%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLF 137
           PVL  L    K     LAL +F   R+ +    +       +V+   CK    + A  LF
Sbjct: 244 PVLNRL---CKSGNSALALDLF---RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 297

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
             M   G+K  V  Y++L+      G  D+    + +M    +  PDV T+S LI    K
Sbjct: 298 NEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVK 356

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             +    +++  EM   GI    +TYN++IDG+ K     E    F  MV S GC PDI 
Sbjct: 357 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV-SKGCEPDIV 415

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T + +I++Y  +  ++   + + E +  G+  +  T N L   + ++G  +  + +   M
Sbjct: 416 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 475

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
             R   P+VVTY I+++     G + K  E F+KM+   M      Y  ++     A  +
Sbjct: 476 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 535

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               S+   + +  V  D   +N +I    + G + +   LF  MKE  C PD+ T+  +
Sbjct: 536 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 595

Query: 438 IQAY 441
           I+A+
Sbjct: 596 IRAH 599



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 2/316 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G +P    ++ LV+ +   G + EA + ++ M  +   +PD+ T S LI       R   
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSE 222

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              ++  M   G +   VTY  +++   K+         F  M E       +   + +I
Sbjct: 223 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVI 281

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            +    G+ +     +NE  + G+KAD+ T + L       G +D    ++  M  R   
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 341

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT++ +I+ F K G + + +E + +M  RG+ P++ITY SL+  + K   + + + +
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 401

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              + +     D   ++ +I++Y +A  V+    LF  +  +  +P+ IT+ T++  +  
Sbjct: 402 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 461

Query: 444 LGMTEAAQNLENKMIA 459
            G   AA+ L  +M++
Sbjct: 462 SGKLNAAKELFQEMVS 477



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 10/310 (3%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LFE M+     P+   +  L SA  ++   D        M+ ++  + D+YT +I+I   
Sbjct: 86  LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMINCY 144

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +      +L     LG E   +T++T+++G+    +  E  +    MVE     PD
Sbjct: 145 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPD 203

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRAGMYDKMR 311
           + T++++I+     G + +     +     G + D  T    LN L KS   A   D  R
Sbjct: 204 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 263

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                M++R    +VV Y+IVI++  K G  +     F +M+ +G+K + +TY SL+   
Sbjct: 264 K----MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G       +LR++   ++I D   F+ +I  + + G + +  EL+  M  R   PD 
Sbjct: 320 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 379

Query: 432 ITFATMIQAY 441
           IT+ ++I  +
Sbjct: 380 ITYNSLIDGF 389



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 73/304 (24%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+ +  K  +  +A  L+  M++ G+ P    Y +L+  + +   L EA + + D+
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA-NQMFDL 404

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C+PD+ TYSILI S  K  R D   ++  E+S  G+  + +TYNT++ G+ ++ K
Sbjct: 405 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 464

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEK----------- 277
               +  F  MV S G  P + T   ++    ++G +       EKM+K           
Sbjct: 465 LNAAKELFQEMV-SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 523

Query: 278 ---------------W--YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                          W  +   +  GVK D+                             
Sbjct: 524 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDV----------------------------- 554

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGLIMK 379
                 VTYN++I    K G + + +  F+KMK  G  P+  TY  L+ A+   +GLI  
Sbjct: 555 ------VTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 608

Query: 380 VDSI 383
           V+ I
Sbjct: 609 VELI 612



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/215 (18%), Positives = 92/215 (42%), Gaps = 1/215 (0%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F +M++S    P     N + SA   +   + +  +     L G++ D+ T+ I+   Y 
Sbjct: 87  FESMIQSRPL-PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYC 145

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R        SV+    K  + P  +T++ ++  F   G + +      +M     +P+ +
Sbjct: 146 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 205

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T  +L++     G + +   ++ ++       D   +  +++   ++G+     +LF  M
Sbjct: 206 TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 265

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +ER+     + ++ +I +    G  + A +L N+M
Sbjct: 266 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300


>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hederifolia]
          Length = 364

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 63

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 127/251 (50%), Gaps = 1/251 (0%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I + +   G     V YN +I+ +GKAK F E  S  S M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLTMY 67

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 247

Query: 447 TEAAQNLENKM 457
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 6   AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 64

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 65  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 124 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKSIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 241 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 356

Query: 455 NKM 457
            +M
Sbjct: 357 MEM 359



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 124

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+  S  + +V TY+ ++    K    +    
Sbjct: 125 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKS-IEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 303

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      IV+  +GK    +K  + + +M+  G
Sbjct: 304 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 363


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 8/352 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   LR Q W+      F  L+   GK      A  +  V+   G  P+V  
Sbjct: 124 KKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVIS 183

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI---L 208
           YTAL+ +YG+ G  + A +    M+S S  +P   TY I++K+  +  +F   E++   L
Sbjct: 184 YTALMESYGRGGKCNNAEAIFRRMQS-SGPEPSAITYQIILKTFVEGDKFKEAEEVFETL 242

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +     ++     Y+ +I  Y KA  +E+    FS+MV  G     + T NS++S   +
Sbjct: 243 LDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLMSFETS 301

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              + K+   Y++     ++ D+ +  +L K+YGRA   ++  SV + M      PT   
Sbjct: 302 YKEVSKI---YDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKA 358

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+++ F  +G +E+ +  FK M+   + P+  +Y +++SAY  A  +   +   ++++
Sbjct: 359 YNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK 418

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                 +   +  +I  Y +A DVEKM E++  M+      +     T++ A
Sbjct: 419 VDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDA 470



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 11/256 (4%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS---AYGQSGLLDEAFSTINDMK 176
           ++ M  K    E+A  +F  M+  G+  S   Y +L+S   +Y +        S I D  
Sbjct: 260 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKE-------VSKIYDQM 312

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             SD +PDV +Y++LIK+  +  R +    +  EM   G+  +   YN ++D +  +   
Sbjct: 313 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 372

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+ ++ F +M       PD+++  +M+SAY N+ ++E  EK++    + G + +I T   
Sbjct: 373 EQAKTVFKSM-RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 431

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L K Y +A   +KM  V + M+             +++  G+  +      ++K+M+  G
Sbjct: 432 LIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCG 491

Query: 357 MKPNSITYCSLVSAYS 372
           + P+      L+S  S
Sbjct: 492 VPPDQKAKNVLLSLAS 507



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+AYG  GN    E+  +  + MG   ++ +   L +SYGR G  +   ++   MQ   
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 211

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ +TY I+++TF +    ++ EE F+ +   K   +KP+   Y  ++  Y KAG   
Sbjct: 212 PEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYE 271

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           K   +   +    V   T  +N ++S      +V K   ++  M+     PD +++A +I
Sbjct: 272 KARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDIQPDVVSYALLI 328

Query: 439 QAYNALGMTEAAQNLENKMI 458
           +AY      E A ++  +M+
Sbjct: 329 KAYGRARREEEALSVFEEML 348



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           + + ++I  +GK G+    E     +   G  PN I+Y +L+ +Y + G     ++I R+
Sbjct: 147 IDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRR 206

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNA 443
           +++S        +  I+  + +    ++  E+F T+   K+    PD   +  MI  Y  
Sbjct: 207 MQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKK 266

Query: 444 LGMTEAAQNLENKMIA 459
            G  E A+ + + M+ 
Sbjct: 267 AGNYEKARKVFSSMVG 282


>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           duartei]
          Length = 381

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 134/268 (50%), Gaps = 5/268 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  Y + KKF E  S 
Sbjct: 37  PDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSV 96

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L + YG
Sbjct: 97  FSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYG 155

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ RG++PNSI
Sbjct: 156 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 215

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     L   +
Sbjct: 216 TYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAA 450
           K     PDNI   T I      G  E A
Sbjct: 276 KR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +  LG     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  GEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLR 241

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 152/348 (43%), Gaps = 39/348 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+    +  +F  
Sbjct: 34  GFXPDLVAYNAMINVFGKAKLFREARSLIGEMKT-AGVMPNTTSYSTLLTMYVENKKFLE 92

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              + +EM  +       T N +ID YG+    +E +  F  M    G  P++ + N+++
Sbjct: 93  ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPNVVSYNTLL 151

Query: 264 SAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
             YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +++  MQ R
Sbjct: 152 RVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 208

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK--------------------------- 353
              P  +TY+ +I  +GK G +++    F+K++                           
Sbjct: 209 GIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA 268

Query: 354 ----HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
               H   +P++I   + +   + AG I +   + RQ  ++  + D   F  +I    + 
Sbjct: 269 KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFERMIHLLSKY 328

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 329 KKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 376



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 153/365 (41%), Gaps = 40/365 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 23  AISIFSRLKRL-GFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLL 81

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 82  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 141 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 200

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++S G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +  I     AG IE+    F++    G   +  
Sbjct: 261 RAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDIT 316

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++   SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 317 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 376

Query: 423 KERHC 427
           +E  C
Sbjct: 377 QEVGC 381



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 38/301 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 85  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 141

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 142 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 200

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++ EM   GIE +++TY+TII  +GK  K +     F  +  S G   D     +MI AY
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKL-RSSGVEIDQILFQTMIVAY 259

Query: 267 -------------------------------GNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                                            +G IE+    + +    G   DI    
Sbjct: 260 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFE 319

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +     +   Y  +  V D M+   +FP      IV+  +GK    +K  + + +M+  
Sbjct: 320 RMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEV 379

Query: 356 G 356
           G
Sbjct: 380 G 380


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 155/349 (44%), Gaps = 16/349 (4%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M 
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMS 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DG 229
           +   C PD  TYS LI +  K  R D   ++L EM   G++ +   Y  ++       D 
Sbjct: 222 TEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDV 281

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +G    FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + 
Sbjct: 282 HGALSLFEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP 333

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEY 348
           D   +N +    G+AG  D    +   M      P+VVTYN +I+  F       ++  +
Sbjct: 334 DTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F++MK  G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A   +   ELF  +KE      +  +A MI+     G  + A N+ ++M
Sbjct: 454 AKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEM 502



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 165/363 (45%), Gaps = 5/363 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTAL 155
           A+ IF  ++ ++  Q   Q +  +++ML    Q E+   L+  M ++G   P    Y+AL
Sbjct: 178 AIAIFYQIKTRKC-QPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSAL 236

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           +SA+ + G  D A   +N+MK  +  +P    Y++L+    K +       +  EM +  
Sbjct: 237 ISAFCKLGRRDSAIQLLNEMKD-NGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQY 295

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
                 TY  +I G GKA + +E    F  M +  GC PD   +N+MI+  G +G ++  
Sbjct: 296 CRPDVFTYTELIRGLGKAGRIDEAYHFFYEM-QREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 276 EKWYNEFNLMGVKADIQTLNILTKS-YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            K + E   +     + T N + K+ +       ++ S  + M++    P+  TY+I+I+
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 414

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            F K   +EK     ++M  +G  P    YCSL+ A  KA        + ++++ +    
Sbjct: 415 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS 474

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
            +  +  +I   G+AG ++    +F  M +  C PD   +  ++      GM + A +  
Sbjct: 475 SSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTM 534

Query: 455 NKM 457
            +M
Sbjct: 535 RRM 537



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 140/312 (44%), Gaps = 3/312 (0%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q   + +T L+ +  K      A  LFE M     +P V  YT L+   G++G +DEA+ 
Sbjct: 262 QPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
              +M+    C+PD    + +I    K  R D   K+  EM  L    S VTYNTII   
Sbjct: 322 FFYEMQR-EGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380

Query: 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
            ++K +  E+ S F  M ES G  P  FT + +I  +  +  +EK      E +  G   
Sbjct: 381 FESKSRASEVPSWFERMKES-GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                  L  + G+A  YD    +   +++     +   Y ++I+  GKAG ++     F
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMF 499

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M   G  P+   Y +L+S  ++ G++ +  S +R+++    I D   +N I++   + 
Sbjct: 500 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQ 559

Query: 410 GDVEKMGELFLT 421
            D+      FLT
Sbjct: 560 EDLIVQWRCFLT 571



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 10/330 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K  + + A  L   M  +G++P+  +YT LV+ + +   +  A S   +M
Sbjct: 232 TYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEM 291

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C+PDV+TY+ LI+   K  R D       EM   G     +  N +I+  GKA +
Sbjct: 292 RH-QYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGR 350

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            ++    F  M  +  C P + T N++I A + +     ++  W+      G+     T 
Sbjct: 351 LDDAMKLFQEM-GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 409

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +IL   + +    +K   +++ M ++ F P    Y  +I+  GKA   +   E F+++K 
Sbjct: 410 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
                +S  Y  ++    KAG +    ++  ++       D   +N ++S   + G +++
Sbjct: 470 NCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDE 529

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNAL 444
                  M+E  C+PD       I +YN +
Sbjct: 530 ALSTMRRMQEHGCIPD-------INSYNII 552



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 4/278 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R Q + +    T+T+L+  LGK  + ++A   F  M  +G +P   V   ++
Sbjct: 284 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMI 342

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDLIEKILAEMSYLG 215
           +  G++G LD+A     +M ++  C P V TY+ +IK+  +   R   +      M   G
Sbjct: 343 NFLGKAGRLDDAMKLFQEMGTLR-CIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 401

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           I  S+ TY+ +IDG+ K  + E+       M E G   P      S+I A G +   +  
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLA 460

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + + E       +  +   ++ K  G+AG  D   ++ D M K    P V  YN ++  
Sbjct: 461 CELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 520

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
             + G +++     ++M+  G  P+  +Y  +++   K
Sbjct: 521 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 1/241 (0%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY  +I      +++ EM      MV +  C      L+ ++   GN+  + K    + +
Sbjct: 125 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 340
                 +   Q  N +       G Y+K+  + + M      FP  +TY+ +I  F K G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
             +   +   +MK  GM+P +  Y  LV+ + K   +    S+  ++ +     D   + 
Sbjct: 245 RRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYT 304

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I   G+AG +++    F  M+   C PD I    MI      G  + A  L  +M  +
Sbjct: 305 ELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTL 364

Query: 461 K 461
           +
Sbjct: 365 R 365



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 78  PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF 137
           P      +D   K K++ LA ++F  L++     +  + +  ++  LGK  + + A  +F
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKEN-CGSSSSRVYAVMIKHLGKAGRLDDAINMF 499

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
           + M   G  P V  Y AL+S   ++G+LDEA ST+  M+    C PD+ +Y+I++    K
Sbjct: 500 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE-HGCIPDINSYNIILNGLQK 558


>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           salviifolia]
          Length = 378

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 6   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 64

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 65  LSMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 123

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 124 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 183

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 184 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 243

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 244 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 283



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 1/251 (0%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I + +   G     V YN +I+ +GKAK F E  S  S M ++ G  P+  + ++++S Y
Sbjct: 10  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLSMY 68

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 69  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 128

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 129 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 188

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 189 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 248

Query: 447 TEAAQNLENKM 457
              A+ L +++
Sbjct: 249 VAHAKRLLHEL 259



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 7   AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 65

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 66  SMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 124

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 125 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 183

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 184 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIV 241

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 242 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVK 297

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 298 DITVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 357

Query: 455 NKM 457
            +M
Sbjct: 358 MEM 360



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 4   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 63

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+S Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 64  LLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 123

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 124 IEPNVVSYNTLLRVY 138


>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           barbata]
          Length = 364

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTL 63

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 167/358 (46%), Gaps = 43/358 (12%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK  +   P+  +YS L+   
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKX-AGVMPNTTSYSTLLTMY 67

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 126

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 127 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 373 KAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ-------------AGDV------ 412
           +AGL+     +L +++  D I  DT     I++  G+             AG+V      
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAGAGRIEEATYVFRQAIDAGEVKDITVF 301

Query: 413 EKM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E+M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 302 ERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYMEM 359



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 152/365 (41%), Gaps = 40/365 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M   G+ P+   Y+ L+
Sbjct: 6   AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLL 64

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 65  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 124 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++S G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +  I     AG IE+    F++    G   +  
Sbjct: 244 RAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 299

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++   SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 300 VFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYMEM 359

Query: 423 KERHC 427
           +E  C
Sbjct: 360 QEVGC 364



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   
Sbjct: 8   SIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTM 66

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 67  YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 126

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L  
Sbjct: 127 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 186

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 187 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYST 62

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 124

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 125 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 303

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + + +M+  G
Sbjct: 304 MIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYMEMQEVG 363


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 168/342 (49%), Gaps = 11/342 (3%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           ++M G CK  E  QA  L + M S+G++P+V ++T ++     +G + +A   ++  +  
Sbjct: 35  ILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQAL--LHFRRIG 92

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            DC P+VYTYS L+ +  K  +      ++ EM   G   + VTYN +IDG+ K ++ +E
Sbjct: 93  EDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDE 152

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL- 297
           +      M +  GC  D+ T   ++  +  + +I++  +  N       K ++ T N L 
Sbjct: 153 VLMLLKEMSQR-GCRADVITYTMILDIFCKNNSIDEAYRLLNALE----KRNVVTYNSLF 207

Query: 298 -TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
              S        +  S+++ M +    P  V Y  V+    K   +++  +    M  +G
Sbjct: 208 TALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQG 267

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            K + ++Y  LV A++ AG       +L ++  S  ILDT   N +I  + +AGD+ +  
Sbjct: 268 CKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAH 327

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +LF +M +R  +P N+T+ T+I A+      + A  L ++MI
Sbjct: 328 QLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 51/388 (13%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKP 147
           K  ++Q AL+   LL + +    R        ++ G C   +  QA L F  +  D   P
Sbjct: 42  KAGEFQQALE---LLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGED-CAP 97

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           +V  Y+ LV A  +SG   EA+  + +M     C P+V TY+ LI    K  R D +  +
Sbjct: 98  NVYTYSTLVDALCKSGQPHEAYGLVTEMVK-KGCSPNVVTYNALIDGFRKLERLDEVLML 156

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EMS  G     +TY  I+D + K    +E     +A+ +      ++ T NS+ +A  
Sbjct: 157 LKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKR-----NVVTYNSLFTALS 211

Query: 268 NSGN---------IEKM--------EKWYNEFNLM--------------------GVKAD 290
            +           +EKM        +  Y    LM                    G K D
Sbjct: 212 TAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTD 271

Query: 291 IQTLNILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
             +  IL  ++  AG  YD +  +   +   +   T  T N+VI  F KAG + +  + F
Sbjct: 272 DVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTK-TMNVVIHKFCKAGDLHEAHQLF 330

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M  RG  P+++TY +L+ A+ KA        +L Q+  +D   +   +N II ++ + 
Sbjct: 331 KSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCRE 390

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATM 437
              E+   +F  M +  C PD +++ T+
Sbjct: 391 QREEEARGIFQMMVDNGCFPDRVSYTTL 418



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 121/287 (42%), Gaps = 6/287 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSV 149
           +K +   ++  LL++      R    T  M++   CK    ++A  L   +    +    
Sbjct: 145 RKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYN 204

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            ++TAL +A G      EA S +  M      +P+   Y  ++    K  R D   ++L 
Sbjct: 205 SLFTALSTAEGDR--TTEALSLLEKMIQ-EGTRPNQVNYRTVLLMLCKNSRLDEAYQVLL 261

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G +   V+Y  ++  +  A +  +       M+ SG    D  T+N +I  +  +
Sbjct: 262 SMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYI-LDTKTMNVVIHKFCKA 320

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G++ +  + +      G      T N L  ++ +A   D    ++  M +  F P V+TY
Sbjct: 321 GDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITY 380

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           N +I++F +    E+    F+ M   G  P+ ++Y +L  + ++A +
Sbjct: 381 NSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTLKLSKNEAAI 427



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+Y I+++ F KAG  ++  E   +MK  G++PN + + +++     AG + +     R+
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRR 90

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +   D   +   ++ ++ A  ++G   +   L   M ++ C P+ +T+  +I  +  L  
Sbjct: 91  I-GEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKL-- 147

Query: 447 TEAAQNLENKMIAMKENSGK 466
               + L+  ++ +KE S +
Sbjct: 148 ----ERLDEVLMLLKEMSQR 163


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 14/323 (4%)

Query: 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVS 179
           V+  +C  PE A  +F  +L  GL P V  Y  L+  + + G +D+A+     M  +SVS
Sbjct: 37  VLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVS 96

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PDV TY+ LI    K       E++L +M   GI  +  TYN++I GY  A  ++E 
Sbjct: 97  ---PDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKES 153

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M  S G  P +   NS I A      I++ +  ++   L G K +I + + L  
Sbjct: 154 VRVFKEM-SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLH 212

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y   G +  M S+++ M  +   P    +NI+I  + + G ++K    F+ M+++GM P
Sbjct: 213 GYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIP 272

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP----FFNCIISAYGQAGDVEKM 415
           +++T+ +++S+  + G   ++D  L +  N  V +  P     + C+I      G++ K 
Sbjct: 273 DTVTFATVISSLCRIG---RLDDALHKF-NHMVDIGVPPSEAVYRCLIQGCCNHGELVKA 328

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            EL   M  +   P  + + + I
Sbjct: 329 KELISEMMNKDIPPPGVKYFSSI 351



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P      +L   CT     +L   +   +   G+     +YNT+IDG+ K  + ++    
Sbjct: 30  PTTSLIDVLPAECTGP---ELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 86

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M+E     PD+ T NS+I     +  + K E+   +    G++ + +T N L   Y 
Sbjct: 87  FYKMIEQS-VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYS 145

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            AGM+ +   V   M      P VV  N  I    +   I++ ++ F  M  +G KPN I
Sbjct: 146 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNII 205

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y+  G    ++S++  + +  ++ +  FFN +I+AY + G ++K   +F  M
Sbjct: 206 SYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDM 265

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
           + +  +PD +TFAT+I +   +G  + A +  N M+ +     + + +C
Sbjct: 266 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRC 314



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 125/276 (45%), Gaps = 1/276 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV +Y+ LI   +K    D   ++  +M    +    VTYN++IDG  K K+  + E  
Sbjct: 62  PDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERV 121

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV++G   P+  T NS+I  Y  +G  ++  + + E +  G+   +   N    +  
Sbjct: 122 LEQMVDAG-IRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALC 180

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R     + + + D M  +   P +++Y+ ++  +   G    M      M  +G+ PN  
Sbjct: 181 RHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHR 240

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  L++AY++ G++ K   I   ++N  +I DT  F  +IS+  + G ++     F  M
Sbjct: 241 FFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 300

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +    P    +  +IQ     G    A+ L ++M+
Sbjct: 301 VDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMM 336



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 136/328 (41%), Gaps = 35/328 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  L+    +C   ++A L+FE M + G+ P    +  ++S+  + G LD+A    N M 
Sbjct: 242 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 301

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY-NTIIDGYGKAKK 235
            +    P    Y  LI+ C         +++++EM    I    V Y ++II+   K  +
Sbjct: 302 DIG-VPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR 360

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM-------------------- 275
             E +     MV++G   P++ T NS++  Y   GN+E+                     
Sbjct: 361 VAEGKDIMDLMVQTGQ-RPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMA 419

Query: 276 ------EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD---FMQKRFFFPTV 326
                 +K ++E    G    IQT  ++     R    D+   +++    M  +F    +
Sbjct: 420 RRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF---DI 476

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +T+NIVI    K G  ++ +E F  +   G+ P   TY  ++S   K     + D++   
Sbjct: 477 ITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFIS 536

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEK 414
           VE S    D+   N I+    +  +V K
Sbjct: 537 VEKSGRAPDSRLLNHIVRMLLKKAEVAK 564



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 42/393 (10%)

Query: 94  WQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           W+ ++++F  +           C +F   +    + K+   A  +F+ M+  G KP++  
Sbjct: 150 WKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKE---AKDIFDSMVLKGPKPNIIS 206

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+ L+  Y   G      S +N M S     P+   ++ILI +  +    D    I  +M
Sbjct: 207 YSTLLHGYAAEGCFANMNSLVNLMVS-KGIVPNHRFFNILINAYARCGMMDKAMLIFEDM 265

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+    VT+ T+I    +  + ++    F+ MV+ G   P       +I    N G 
Sbjct: 266 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG-VPPSEAVYRCLIQGCCNHGE 324

Query: 272 IEKMEKWYNE-----FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           + K ++  +E         GVK     +N L K  GR     + + +MD M +    P V
Sbjct: 325 LVKAKELISEMMNKDIPPPGVKYFSSIINNLFKE-GRVA---EGKDIMDLMVQTGQRPNV 380

Query: 327 VTYNIVIETFGKAGHIEKMEEYF----------------------KKMKHRGMKPNSI-- 362
           VT+N ++E +   G++E+   Y                       KKM H  ++  +   
Sbjct: 381 VTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVS 440

Query: 363 --TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             TY  ++    +     + + +L ++   +V  D   FN +ISA  + G  ++  ELF 
Sbjct: 441 IQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFA 500

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +     VP   T+  MI         E A NL
Sbjct: 501 AISTYGLVPTVHTYNLMISNLIKEESYEEADNL 533



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 126/319 (39%), Gaps = 27/319 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L +  + + A   F  M+  G+ PS  VY  L+      G L +A   I++M
Sbjct: 276 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEM 335

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     P V  +S +I +  K  R    + I+  M   G   + VT+N++++GY     
Sbjct: 336 MNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGN 395

Query: 236 FEEM--------------------------ESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            EE                           +  F  M+ESG     I T   ++     +
Sbjct: 396 MEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTT-VSIQTYGVVLGGLCRN 454

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
              ++      +   M VK DI T NI+  +  + G   + + +   +      PTV TY
Sbjct: 455 NCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTY 514

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N++I    K    E+ +  F  ++  G  P+S     +V    K   + K  + L  ++ 
Sbjct: 515 NLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDE 574

Query: 390 SDVILDTPFFNCIISAYGQ 408
           +++ L+    + + S + +
Sbjct: 575 NNLTLEASTISLLASLFSR 593


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 139/284 (48%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+     +Y+T+
Sbjct: 47  KAISIFSRLKX-SGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTL 105

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y +  KF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 106 LTMYVENXKFLEALSVFSEMREXK-CLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMG 164

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 165 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 224

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 225 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 284

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 285 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 324



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 4/303 (1%)

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++ +G+ GL D A S +  M+   D  P D+   S LI+   K   +     I + +   
Sbjct: 1   ITHFGKEGLFDXALSWLQKMEX--DXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXS 58

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G       YN +I+ +GKAK F E  S    M ++ G  P   + +++++ Y  +    +
Sbjct: 59  GXXPDLXAYNAMINVFGKAKLFREARSLIXEM-KTAGVMPXTTSYSTLLTMYVENXKFLE 117

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               ++E        D+ T NI+   YG+ GM  +   +   M+K    P VV+YN ++ 
Sbjct: 118 ALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 177

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +G A    +    F+ M+ + ++ N +TY S++  Y K     K +++++++++  +  
Sbjct: 178 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEP 237

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+   A+ L 
Sbjct: 238 NSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLL 297

Query: 455 NKM 457
           +++
Sbjct: 298 HEL 300



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 157/356 (44%), Gaps = 39/356 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P   +YS L+   
Sbjct: 51  IFSRLKXSGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKT-AGVMPXTTSYSTLLTMY 109

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM          T N +ID YG+    +E +  F  M    G  P+
Sbjct: 110 VENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 168

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 169 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 225

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 226 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 285

Query: 373 KAGLIMKVDSIL-------------------------------RQVENSDVILDTPFFNC 401
           +AGL+     +L                               RQ  +S  + D   F  
Sbjct: 286 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDITVFER 345

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 346 MIHLLSKYKKYMNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLHEFDKASDIYMEM 401



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 77/181 (42%), Gaps = 6/181 (3%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  +    T++ ++ + GK  + ++A++LF+ + S G++    ++  ++ AY ++GL+
Sbjct: 231 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 290

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   ++++K     +PD       I       R +    +  +    G       +  
Sbjct: 291 AHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDITVFER 345

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I    K KK+  +   F  M    G  PD   +  +++AYG     +K    Y E   +
Sbjct: 346 MIHLLSKYKKYMNVVEVFDKM-RGLGYFPDSNVIAVVLNAYGKLHEFDKASDIYMEMQEV 404

Query: 286 G 286
           G
Sbjct: 405 G 405


>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
 gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
          Length = 723

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 155/307 (50%), Gaps = 3/307 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +FE M   G+K S DV+  LV ++   GL +EA     +M+     + +   Y+ L+ + 
Sbjct: 331 IFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAY 389

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K +  + +E + AE+   G++ +A TYN ++D Y +  + + +E+    M E  G  P+
Sbjct: 390 NKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPN 448

Query: 256 IFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           + +   +ISAYG +  +  M    +     +G+K    +   L  +Y  +G ++K  +  
Sbjct: 449 VKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASF 508

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M      P+V TY  +++ F ++G  EK+ E +K M    +K   ITY +L+  ++K 
Sbjct: 509 EEMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQ 568

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           GL ++   ++ +     +      +N +++AY + G   K+ +L   M   +  PD+IT+
Sbjct: 569 GLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITY 628

Query: 435 ATMIQAY 441
           +TMI A+
Sbjct: 629 STMIYAF 635



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 152/300 (50%), Gaps = 1/300 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A ++   M   G++ +  VY  L+ AY +S  ++E      ++K+    KP   TY+I
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKA-KGLKPTAATYNI 419

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+ +  +  + D++E +L EM  LG+E +  ++  +I  YG+ KK  +M +     ++  
Sbjct: 420 LMDAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKV 479

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P   +  ++I AY  SG  EK    + E  + G+K  ++T   L  ++ R+G  +K+
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKL 539

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M +     T +TYN +++ F K G   +  +   +    G++P+ +TY  L++A
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNA 599

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y++ G   K+  +L+++   ++  D+  ++ +I A+ +  D ++       M +   VPD
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 156/329 (47%), Gaps = 15/329 (4%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEAL-----DEAIKQKKWQLALKIFGLLR 105
           + K  R+   +  I +K+S K  K  W + V   L     DE +K++   +  ++     
Sbjct: 318 MRKAGRSAKEVWEIFEKMSDKGVK--WSQDVFGGLVKSFCDEGLKEEALVIQTEM----- 370

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +++  ++    +  LM    K    E+   LF  + + GLKP+   Y  L+ AY +    
Sbjct: 371 EKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQP 430

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-DLIEKILAEMSYLGIECSAVTYN 224
           D   + + +M+ +   +P+V +++ LI +  +  +  D+       M  +G++ S+ +Y 
Sbjct: 431 DIVETLLREMEDLG-LEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYT 489

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I  Y  +   E+  +SF  M    G  P + T  S++ A+  SG+ EK+ + +     
Sbjct: 490 ALIHAYSVSGWHEKAYASFEEMWME-GIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLR 548

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
             +K    T N L   + + G+Y + R V+    K    P+V+TYN+++  + + G   K
Sbjct: 549 EKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAK 608

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           + +  K+M    +KP+SITY +++ A+ +
Sbjct: 609 LPQLLKEMAALNLKPDSITYSTMIYAFVR 637



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 153/336 (45%), Gaps = 4/336 (1%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L  +LG+ +  +   LL   +        V +Y A +S    S   D+A+     M  + 
Sbjct: 244 LFTLLGRERMADYILLLLSNLPDKEEFKDVRLYNAAISGLSASQRYDDAWEVYEAMNKI- 302

Query: 180 DCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +  PD  T +I+I +  K  R    + +I  +MS  G++ S   +  ++  +   +  +E
Sbjct: 303 NVFPDNVTCAIMITTMRKAGRSAKEVWEIFEKMSDKGVKWSQDVFGGLVKSFCD-EGLKE 361

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                   +E  G   +    N+++ AY  S +IE++E  + E    G+K    T NIL 
Sbjct: 362 EALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILM 421

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME-EYFKKMKHRGM 357
            +Y R    D + +++  M+     P V ++  +I  +G+   +  M  + F +MK  G+
Sbjct: 422 DAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGL 481

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           KP+S +Y +L+ AYS +G   K  +   ++    +      +  ++ A+ ++GD EK+ E
Sbjct: 482 KPSSHSYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKLME 541

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++  M         IT+ T++  +   G+   A+++
Sbjct: 542 IWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDV 577


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 158/348 (45%), Gaps = 39/348 (11%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++ G LR+ +  +     F+ L+    +   P+ A  L     + GL P  +  TAL+SA
Sbjct: 214 RLLGDLRESR-LEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 272

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
            G +G + EA +   +     + KP    Y+ L+K   +       E++L EMS  G+  
Sbjct: 273 LGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAP 332

Query: 219 SAVTYNTIIDGYGKAKKFE-------EMES-------------------------SFSAM 246
              TY+ ++D Y +A ++E       EME+                         +F+ +
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVL 392

Query: 247 VE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            E  + G  PD    N MI  +G    +      +N+    G++ D+ T N L  ++ + 
Sbjct: 393 REMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKG 452

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G +D+   + + M++    P   TYNI+I   G+  H E +E    +MK +G+ PN ITY
Sbjct: 453 GRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITY 512

Query: 365 CSLVSAYSKAGLIMK-VDSILRQVENSDVILDTP-FFNCIISAYGQAG 410
            +LV  Y ++G   + +D I  +   +D +  +P  ++ +++AY Q G
Sbjct: 513 TTLVDVYGRSGRYKEAIDCI--EAMKADGLKPSPTMYHALVNAYAQRG 558



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 155/320 (48%), Gaps = 10/320 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 336 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM 395

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           ++ S  +PD + Y+++I +  K+    H  D   K+  E    GIE   VT+NT+ID + 
Sbjct: 396 QA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREE----GIEPDVVTWNTLIDAHC 450

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C P   T N MI+  G   + E +E   +E    G+  +I
Sbjct: 451 KGGRHDRAAELFEEMRESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G Y +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK  G++ + +   SL++A+ +   +++  S+L+ +  + +  D   +  ++ A  +   
Sbjct: 570 MKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQ 629

Query: 412 VEKMGELFLTMKERHCVPDN 431
            +K+  ++  M    C PD 
Sbjct: 630 FDKVPVIYEEMITSGCAPDR 649



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 139/322 (43%), Gaps = 43/322 (13%)

Query: 180 DCKPDVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 295
            +      A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K Y R         V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 408
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 409 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-- 481

Query: 441 YNALGMTEAAQNLENKMIAMKE 462
            N LG  E  + +E  +  MKE
Sbjct: 482 -NLLGEQEHWEGVEAMLSEMKE 502


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 165/344 (47%), Gaps = 2/344 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++T L+  L +  + ++   +F+ M  D   P+V  YT +V A  +SG   EA +  ++M
Sbjct: 41  SYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEM 100

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C+P+++TY+++I +  K  + +   +IL EM   G+  S  TYN +IDGY K   
Sbjct: 101 RE-RGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGM 159

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E  +     M  S  C+P+  T N +I  +    N+ +     ++     +   + T N
Sbjct: 160 VEAAQEILDLM-HSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYN 218

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     + G  D    +++ M +    P   TY++ I+T  K G IE+    F  +K +
Sbjct: 219 SLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK 278

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+K N + Y +L+  Y KAG +   +S+L ++   D + ++  +N +I    +   V++ 
Sbjct: 279 GIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEA 338

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             L  +M ++       T+  +I A    G  + A  + ++M++
Sbjct: 339 LLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVS 382



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 165/361 (45%), Gaps = 3/361 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ +F  +R++   +    T+T ++  + K  + E+   + + M+  GL PSV  Y AL+
Sbjct: 93  AINLFSEMRERGC-EPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALI 151

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             Y + G++ EA   I D+   + C P+  TY+ LI    +         +L++M    +
Sbjct: 152 DGYCKEGMV-EAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRL 210

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S VTYN++I G  K    +      + M E+G   PD +T +  I      G IE+  
Sbjct: 211 TPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENG-VVPDQWTYSVFIDTLCKKGRIEEAN 269

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
             +N     G+KA+      L   Y +AG  D   S++D M      P   TYN +I+  
Sbjct: 270 VLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGL 329

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K   +++     + M  +G+K    TY  L+ A  K G       IL Q+ +S    D 
Sbjct: 330 CKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDV 389

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +   I A+   G++++  ++   M ER  +PD +T+  +I AY  LG+   A ++  +
Sbjct: 390 YIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKR 449

Query: 457 M 457
           M
Sbjct: 450 M 450



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 174/415 (41%), Gaps = 34/415 (8%)

Query: 74  KNLWPK-PVLEAL-DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131
           K L P  P   AL D   K+   + A +I  L+          +T+ +L+    + K   
Sbjct: 138 KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNE-RTYNELICGFCRKKNVH 196

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L   ML   L PSV  Y +L+    + G LD A+  +N M   +   PD +TYS+ 
Sbjct: 197 RAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE-NGVVPDQWTYSVF 255

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I +  K  R +    +   +   GI+ + V Y  +IDGY KA K ++  S    M+ +  
Sbjct: 256 IDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRML-TED 314

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+  T N++I        +++           G+K  + T  IL  +  + G +D   
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAH 374

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++D M    + P V  Y   I  F   G+I++ E+    M  RG+ P+++TY  ++ AY
Sbjct: 375 RILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAY 434

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISA-----------------------YGQ 408
              GL+     +L+++ ++        ++C+I                         +  
Sbjct: 435 GGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFAD 494

Query: 409 AGDVEKMG------ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             DV KM       ELF  M E  C P+  T+A +I     +G    AQ L + M
Sbjct: 495 VADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHM 549



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 2/294 (0%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           ++ AFS  N M     C+ +  +Y+ LI    +  R D    I  +M       +  TY 
Sbjct: 20  VNSAFSVFNMMPK-KGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            I+    ++ +  E  + FS M E G C P+I T   MI+A      +E+  +  +E   
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERG-CEPNIHTYTVMINAMCKETKLEEGRRILDEMVE 137

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+   + T N L   Y + GM +  + ++D M      P   TYN +I  F +  ++ +
Sbjct: 138 KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR 197

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                 KM    + P+ +TY SL+    K G +     +L  +  + V+ D   ++  I 
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              + G +E+   LF ++KE+    + + +  +I  Y   G  + A +L ++M+
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRML 311



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 141/339 (41%), Gaps = 45/339 (13%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
            QW      T++  +  L K  + E+A++LF  +   G+K +  +YTAL+  Y ++G +D
Sbjct: 248 DQW------TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMD 301

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S ++ M +  DC P+  TY+ LI    K  +      ++  M   G++C+  TY  +
Sbjct: 302 DANSLLDRMLT-EDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTIL 360

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I    K   F+        MV SG   PD++   + I A+   GNI++ E   +     G
Sbjct: 361 IVAMLKEGDFDYAHRILDQMVSSGY-QPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERG 419

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET----------- 335
           V  D  T  ++  +YG  G+ +    V+  M      P+  TY+ +I+            
Sbjct: 420 VMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYK 479

Query: 336 ------------FGKAGHIEKME------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
                       F     + KM       E F+KM   G  PN  TY  L+    K G +
Sbjct: 480 NVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRL 539

Query: 378 MKVDSIL-----RQVENSDVILDTPFFNCI--ISAYGQA 409
                +      R V  S+ I ++   NC   +  YG A
Sbjct: 540 GVAQKLFDHMNERGVSPSEAIYNS-LLNCCCELGIYGDA 577



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 14/249 (5%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  +  +M   G+ P    YT ++ AYG  GLL+ AF  +  M   + C P  +TYS 
Sbjct: 406 KEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFD-TGCDPSHHTYSC 464

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSA---VTYNTIIDGYGKAKKFEEMESSFSAMV 247
           LIK   K       E++  +   + + C +   V +  + D + K  KFE     F  M+
Sbjct: 465 LIKHLLK-------EELTKKYKNVAL-CDSIPNVFFADVADVW-KMMKFETALELFEKML 515

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E G C P+I T   +I      G +   +K ++  N  GV       N L       G+Y
Sbjct: 516 EHG-CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIY 574

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
                ++  M +    P + + N++     + G  EK +  F  +   G   + + +  L
Sbjct: 575 GDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKIL 634

Query: 368 VSAYSKAGL 376
           +    K GL
Sbjct: 635 IDGLLKNGL 643



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 10/206 (4%)

Query: 61  IKNIEKKVSSKKYKNLW-----PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           IK++ K+  +KKYKN+      P      + +  K  K++ AL++F  + +         
Sbjct: 466 IKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGC-SPNIN 524

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ KL++ L K  +   A  LF+ M   G+ PS  +Y +L++   + G+  +A   +  M
Sbjct: 525 TYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAM 584

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P + + ++L     +    +  + + + +   G     V +  +IDG  K   
Sbjct: 585 MEHGH-LPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLK-NG 642

Query: 236 FEEMESSFSAMVESGGC--HPDIFTL 259
             +  S    ++E+ GC  HP  + +
Sbjct: 643 LSDGCSELLGVMEARGCQIHPQTYRM 668


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 2/334 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF+ ++S GL+P +  Y A++    + G+ D A   +  + S   C PDV +Y+IL
Sbjct: 219 EALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHL-SARGCNPDVVSYNIL 277

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           ++S     R++  E+++ +M   G E + VT++ +I  + +  +  E  +    M E G 
Sbjct: 278 LRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKG- 336

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD ++ + +ISA+   G ++   ++  +    G   DI   N +  +  + G  D   
Sbjct: 337 LTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLAL 396

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V + + +    PTV  YN +       G+  K  E   +M  +G+ P+ ITY SL+S  
Sbjct: 397 DVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCL 456

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + GL+ +   +L  +E +        FN ++    +A  V +  EL +TM E+ C+P+ 
Sbjct: 457 CRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNE 516

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            ++  +I+     G    A  L N +  +   SG
Sbjct: 517 TSYVLLIEGIAYAGWRAEAMELANSLYRLGVISG 550



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 164/343 (47%), Gaps = 10/343 (2%)

Query: 120 LMVMLGK-CKQPEQASLLF--EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           LM +L + C+  +    L+  E ++S G KP V + T L+  +  S  L +A   +  ++
Sbjct: 65  LMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILE 124

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +  D  PDVY+Y+ +I   +K ++ D   ++   M   G     VTYN +I   G     
Sbjct: 125 TYGD--PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMI---GSLCSR 179

Query: 237 EEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            ++E +F  M E    GC P + T   +I A    G I +  + ++E    G++ D+ T 
Sbjct: 180 GKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTY 239

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N + +   + GM D+    +  +  R   P VV+YNI++ +F      E  E   K M  
Sbjct: 240 NAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVL 299

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +PN +T+  L+S++ + G + +  ++L  ++   +  D+  ++ +ISA+ + G ++ 
Sbjct: 300 SGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDL 359

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E    M    C+PD + + T++      G  + A ++  K+
Sbjct: 360 AIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKL 402



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 161/341 (47%), Gaps = 3/341 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           TKL+      +  ++A  + E++ + G  P V  Y A++S + ++  +D A    + M+S
Sbjct: 101 TKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRS 159

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                PDV TY+I+I S     + +L  +++ E+   G + S +TY  +I+      +  
Sbjct: 160 -RGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRIN 218

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E    F  +V S G  PD++T N++I      G  ++   +    +  G   D+ + NIL
Sbjct: 219 EALELFDELV-SRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNIL 277

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            +S+     ++    +M  M      P VVT++I+I +F + G + +     + MK +G+
Sbjct: 278 LRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGL 337

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P+S +Y  L+SA+ K G +      L ++ +   + D   +N I++   + G  +   +
Sbjct: 338 TPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALD 397

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +F  + E  C P    + TM  A  + G    A  + ++MI
Sbjct: 398 VFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMI 438



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 113/245 (46%), Gaps = 2/245 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E    L + M+  G +P+V  ++ L+S++ + G + EA + +  MK      PD Y+Y  
Sbjct: 288 EDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKE-KGLTPDSYSYDP 346

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI +  K  R DL  + L +M   G     V YNTI+    K    +     F  + E G
Sbjct: 347 LISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVG 406

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C P +   N+M SA  + GN  K  +  +E    G+  D  T N L     R G+ D+ 
Sbjct: 407 -CPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEA 465

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M+   F PTV+++NIV+    KA  + +  E    M  +G  PN  +Y  L+  
Sbjct: 466 IGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEG 525

Query: 371 YSKAG 375
            + AG
Sbjct: 526 IAYAG 530


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 172/368 (46%), Gaps = 46/368 (12%)

Query: 113 RCQTFTKLMVMLG-KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           R    T L+  LG   + PE  +L  E  L+  +KP    Y AL+  Y + G L  A   
Sbjct: 267 RSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHV 326

Query: 172 INDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +++M   S+C   PD  TYS+L+ + T+  R++    +L EM   G++ S+  ++ I+ G
Sbjct: 327 LDEM---SECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAG 383

Query: 230 YGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +   +   + + +F+ + E  + G  PD    N MI  +G    +      +N     G+
Sbjct: 384 F---RDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGI 440

Query: 288 KADIQTLNILTKSYGRAGMYD-------KMR----------------------------S 312
           + D+ T N L  ++ + G +D       +MR                            +
Sbjct: 441 EPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVET 500

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           +M  M+++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY+
Sbjct: 501 MMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYA 560

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + GL     ++++ +    +   T   N +I+A+G+   V +   +   MKE    PD I
Sbjct: 561 QRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVI 620

Query: 433 TFATMIQA 440
           T+ T+++A
Sbjct: 621 TYTTLMKA 628



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 162/361 (44%), Gaps = 2/361 (0%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           ++ G LR  +  +     F+ L+    +   P+ A  L     + GL P  +  TAL+SA
Sbjct: 219 RLLGDLRDSR-LEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISA 277

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
            G +G + EA +   +     + KP    Y+ L+K   K       E +L EMS  G+  
Sbjct: 278 LGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAP 337

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TY+ ++D Y +A ++E        M E+ G  P  +  + +++ + + G+ +K    
Sbjct: 338 DEATYSLLVDAYTRAGRWESARILLKEM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAV 396

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E +  GV+ D    N++  ++G+         V + M+     P VVT+N +I+   K
Sbjct: 397 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCK 456

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  +   E FK+M+     P + TY  +++   +    + V++++ +++   ++ +   
Sbjct: 457 GGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIIT 516

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++  YG++G  ++  +    MK     P    +  ++ AY   G+ + A N+   M 
Sbjct: 517 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 576

Query: 459 A 459
           A
Sbjct: 577 A 577



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 161/339 (47%), Gaps = 10/339 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M
Sbjct: 341 TYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM 400

Query: 176 KSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            + S  +PD + Y+++I +  K+    H  D+  ++  E    GIE   VT+NT+ID + 
Sbjct: 401 HA-SGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGE----GIEPDVVTWNTLIDAHC 455

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K  + +     F  M ES  C P   T N MI+  G       +E   +E    G+  +I
Sbjct: 456 KGGRHDCAMELFKEMRESN-CPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNI 514

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   YGR+G Y +    ++ M+     P+   Y+ ++  + + G  +      K 
Sbjct: 515 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 574

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G++ +++   SL++A+ +   +++  S+L+ ++ +D   D   +  ++ A  +   
Sbjct: 575 MRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQ 634

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +K+  ++  M    C PD    A +  A   +  T  A
Sbjct: 635 FDKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHTRVA 673



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 4/291 (1%)

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           + D++  S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G
Sbjct: 221 LGDLRD-SRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALG 279

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
            A +  E E+ F     +G   P     N+++  Y   G+++  E   +E +  GV  D 
Sbjct: 280 IAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDE 339

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T ++L  +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++
Sbjct: 340 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLRE 399

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G++P+   Y  ++  + K   +     +  ++    +  D   +N +I A+ + G 
Sbjct: 400 MHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGR 459

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
            +   ELF  M+E +C P   T+  MI   N LG  E    +E  M  MKE
Sbjct: 460 HDCAMELFKEMRESNCPPGTTTYNIMI---NLLGEQERWVGVETMMSEMKE 507


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 2/348 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           +Q    T+  ++  L K      A  LF  M    +K SV  Y+ ++ +  + G  D+A 
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           S  N+M+ +   K DV TYS LI       ++D   K+L EM    I    VT++ +ID 
Sbjct: 266 SLFNEME-MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K  K  E +  ++ M+ + G  PD  T NS+I  +     + +  + ++     G + 
Sbjct: 325 FVKEGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           DI T +IL  SY +A   D    +   +  +   P  +TYN ++  F ++G +   +E F
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  RG+ P+ +TY  L+      G + K   I  +++ S + L    +N II     A
Sbjct: 444 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 503

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             V+    LF ++ ++   PD +T+  MI      G    A  L  KM
Sbjct: 504 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 10/364 (2%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLF 137
           PVL  L    K     LAL +F   R+ +    +       +V+   CK    + A  LF
Sbjct: 215 PVLNRL---CKSGNSALALDLF---RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 268

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
             M   G+K  V  Y++L+      G  D+    + +M    +  PDV T+S LI    K
Sbjct: 269 NEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVK 327

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             +    +++  EM   GI    +TYN++IDG+ K     E    F  MV S GC PDI 
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV-SKGCEPDIV 386

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T + +I++Y  +  ++   + + E +  G+  +  T N L   + ++G  +  + +   M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
             R   P+VVTY I+++     G + K  E F+KM+   M      Y  ++     A  +
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
               S+   + +  V  D   +N +I    + G + +   LF  MKE  C PD+ T+  +
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566

Query: 438 IQAY 441
           I+A+
Sbjct: 567 IRAH 570



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 2/316 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G +P    ++ LV+ +   G + EA + ++ M  +   +PD+ T S LI       R   
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSE 193

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              ++  M   G +   VTY  +++   K+         F  M E       +   + +I
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVI 252

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            +    G+ +     +NE  + G+KAD+ T + L       G +D    ++  M  R   
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVT++ +I+ F K G + + +E + +M  RG+ P++ITY SL+  + K   + + + +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              + +     D   ++ +I++Y +A  V+    LF  +  +  +P+ IT+ T++  +  
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432

Query: 444 LGMTEAAQNLENKMIA 459
            G   AA+ L  +M++
Sbjct: 433 SGKLNAAKELFQEMVS 448



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 10/310 (3%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LFE M+     P+   +  L SA  ++   D        M+ ++  + D+YT +I+I   
Sbjct: 57  LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMINCY 115

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +      +L     LG E   +T++T+++G+    +  E  +    MVE     PD
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPD 174

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRAGMYDKMR 311
           + T++++I+     G + +     +     G + D  T    LN L KS   A   D  R
Sbjct: 175 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 234

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                M++R    +VV Y+IVI++  K G  +     F +M+ +G+K + +TY SL+   
Sbjct: 235 K----MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G       +LR++   ++I D   F+ +I  + + G + +  EL+  M  R   PD 
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350

Query: 432 ITFATMIQAY 441
           IT+ ++I  +
Sbjct: 351 ITYNSLIDGF 360



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 73/304 (24%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+ +  K  +  +A  L+  M++ G+ P    Y +L+  + +   L EA + + D+
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA-NQMFDL 375

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C+PD+ TYSILI S  K  R D   ++  E+S  G+  + +TYNT++ G+ ++ K
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEK----------- 277
               +  F  MV S G  P + T   ++    ++G +       EKM+K           
Sbjct: 436 LNAAKELFQEMV-SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 494

Query: 278 ---------------W--YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                          W  +   +  GVK D+                             
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDV----------------------------- 525

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGLIMK 379
                 VTYN++I    K G + + +  F+KMK  G  P+  TY  L+ A+   +GLI  
Sbjct: 526 ------VTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 579

Query: 380 VDSI 383
           V+ I
Sbjct: 580 VELI 583



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/215 (18%), Positives = 92/215 (42%), Gaps = 1/215 (0%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F +M++S    P     N + SA   +   + +  +     L G++ D+ T+ I+   Y 
Sbjct: 58  FESMIQSRPL-PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYC 116

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R        SV+    K  + P  +T++ ++  F   G + +      +M     +P+ +
Sbjct: 117 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 176

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T  +L++     G + +   ++ ++       D   +  +++   ++G+     +LF  M
Sbjct: 177 TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 236

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +ER+     + ++ +I +    G  + A +L N+M
Sbjct: 237 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271


>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
           castellanii str. Neff]
          Length = 642

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 171/364 (46%), Gaps = 17/364 (4%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++ +Q      + ++ +L + +Q E A  L E+M   G  P++ V + L+   GQ+   D
Sbjct: 97  KRTHQLHPSAVSAVLPLLARTRQWETAVELVELMPRHGHTPNLFVISGLLKVLGQARQPD 156

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            A       +      PD + +S LI +     R D  E+  A M+ LG+  +   ++ +
Sbjct: 157 NAHYLAEIERR--GLTPDSHCFSALITALGGAGRADEAERYFARMTQLGLAPNLHCFSAL 214

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+  G A + ++ E  F AM +  G  PD    +++I+A G +G + + E+ + +   +G
Sbjct: 215 INALGNAGRVDDAERCFDAM-DQLGVVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLG 273

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V  D+   + L  +  +AG  D  + V   +  R   P +V +N +I  F  AG  ++ E
Sbjct: 274 VVPDLHCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAE 333

Query: 347 EYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQV------------ENSDVI 393
            +F K+   G +KP+ I+Y +L+ A        +  ++L+++             + +V+
Sbjct: 334 HWFAKITTTGRLKPDRISYSALIQANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVV 393

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             T   +C+  A G+   +++  E+F  M ++   P+  TF  +I  +  +G  E A++ 
Sbjct: 394 SYTTVISCLAKARGR-HHMDQAQEVFNEMVKQGVRPNATTFGALIHGHALMGDLETARSR 452

Query: 454 ENKM 457
             +M
Sbjct: 453 LKQM 456



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 200/461 (43%), Gaps = 56/461 (12%)

Query: 53  KILRTEFAIKNIEKKVSS-KKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQ 111
           K L    AI  +++ V++ K+   L P  V   L    + ++W+ A+++  L+  +  + 
Sbjct: 78  KALNARRAIGEVDELVATIKRTHQLHPSAVSAVLPLLARTRQWETAVELVELM-PRHGHT 136

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
                 + L+ +LG+ +QP+ A  L E+    GL P    ++AL++A G +G  DEA   
Sbjct: 137 PNLFVISGLLKVLGQARQPDNAHYLAEIE-RRGLTPDSHCFSALITALGGAGRADEAERY 195

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
              M  +    P+++ +S LI +     R D  E+    M  LG+   A  ++T+I   G
Sbjct: 196 FARMTQLG-LAPNLHCFSALINALGNAGRVDDAERCFDAMDQLGVVPDAHCFSTLIAALG 254

Query: 232 KAKKFEEMESSFSAM----------------------------------VESGGCHPDIF 257
            A +  E E  F+ M                                  + S G  PD+ 
Sbjct: 255 TAGRVAEAERHFAKMEKLGVVPDLHCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLV 314

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             N++IS + ++G  ++ E W+ +    G +K D  + + L ++       D+  +++  
Sbjct: 315 CFNALISGFADAGRADEAEHWFAKITTTGRLKPDRISYSALIQANEVVARPDRALALLQE 374

Query: 317 MQKRFFFP--------TVVTYNIVIETFGKA---GHIEKMEEYFKKMKHRGMKPNSITYC 365
           M  +             VV+Y  VI    KA    H+++ +E F +M  +G++PN+ T+ 
Sbjct: 375 MTHKVLTLCLLLVCDQNVVSYTTVISCLAKARGRHHMDQAQEVFNEMVKQGVRPNATTFG 434

Query: 366 SLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGD--VEKMGELFLT- 421
           +L+  ++  G +    S L+Q+    ++       N ++ A  +     VE   ++    
Sbjct: 435 ALIHGHALMGDLETARSRLKQMSTEFNLAPAAEIHNILMDAEKRVATDPVEAYHQVLRAV 494

Query: 422 --MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             MK+    PD+ TF+ +I A    G+   A++  + M ++
Sbjct: 495 DHMKQEGVRPDHATFSIVIDAAGFAGLPHEAEHQFHAMTSL 535



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 161/349 (46%), Gaps = 32/349 (9%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+ LM  L K  + + A  +F  + S GLKP +  + AL+S +  +G  DEA      + 
Sbjct: 281 FSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHWFAKIT 340

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY--------LGIECSAVTYNTIID 228
           +    KPD  +YS LI++     R D    +L EM++        L  + + V+Y T+I 
Sbjct: 341 TTGRLKPDRISYSALIQANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVVSYTTVIS 400

Query: 229 GYGKAKKFEEMESS---FSAMVESGGCHPDIFTLNSMISAYGNSGNIE----KMEKWYNE 281
              KA+    M+ +   F+ MV+  G  P+  T  ++I  +   G++E    ++++   E
Sbjct: 401 CLAKARGRHHMDQAQEVFNEMVKQ-GVRPNATTFGALIHGHALMGDLETARSRLKQMSTE 459

Query: 282 FNLMGVKADIQTLNILTKSYGRAG-----MYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           FNL    A+I   NIL  +  R        Y ++   +D M++    P   T++IVI+  
Sbjct: 460 FNL-APAAEIH--NILMDAEKRVATDPVEAYHQVLRAVDHMKQEGVRPDHATFSIVIDAA 516

Query: 337 GKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSIL-----RQVENS 390
           G AG   + E  F  M    G+ PN+  + SL+ A ++ G + K +++L     RQ  ++
Sbjct: 517 GFAGLPHEAEHQFHAMTSLHGLHPNANNFTSLIEALARNGQLDKAEAVLDSLAARQATSA 576

Query: 391 --DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                L    FN ++     AGD  +   +   M +    PD+I  A +
Sbjct: 577 LEHDRLTAKSFNTLLGFCIGAGDAARGQRVAAKMHQAGVEPDDIGQAKL 625


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFSTINDMKSVSDCKPDVYTY 188
           + A  L + M    ++P +  +  L++A  +SG L    A   +++++     +PD  TY
Sbjct: 11  DDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAG-LRPDAITY 69

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAM 246
           + LI +C++    D    +  EM  +  EC     TYN ++  +G+  K +E E  F  +
Sbjct: 70  NTLISACSQGSNLDDAVAVFEEM--IASECRPDLWTYNAMVSVHGRCGKAQEAELMFKEL 127

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           VE G   PD  T NS++ A+   G++E++E+   E    G + D  T N +   YG+ G 
Sbjct: 128 VEKG-FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGR 186

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D    + D M+     P  VTY +++++ GK   I +  +  ++M   G+KP  +T+ +
Sbjct: 187 LDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSA 246

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+ AY+K+G     +    ++  S V  D   +  ++  + ++ +  K+  L+  M +  
Sbjct: 247 LICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDG 306

Query: 427 CVPDNITFATMIQA 440
             PD+  +  ++ A
Sbjct: 307 YKPDDGLYQVLLAA 320



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 141/288 (48%), Gaps = 4/288 (1%)

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSY 213
           +  Y +SG  D+A   ++ M+   D +PD+ +++ LI +  K       +  ++L E+  
Sbjct: 1   MGVYARSGRFDDARQLLDAMRD-QDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQ 59

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G+   A+TYNT+I    +    ++  + F  M+ S  C PD++T N+M+S +G  G  +
Sbjct: 60  AGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVSVHGRCGKAQ 118

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           + E  + E    G + D  T N L  ++ + G  +++  V + + K  F    +TYN +I
Sbjct: 119 EAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMI 178

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
             +GK G ++     + +M+  G  P+++TY  LV +  K   I +   +L ++ ++ + 
Sbjct: 179 HMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLK 238

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
                F+ +I AY ++G  +     F  M E    PD + +  M+  +
Sbjct: 239 PTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 286



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK- 193
           LL EV  + GL+P    Y  L+SA  Q   LD+A +   +M + S+C+PD++TY+ ++  
Sbjct: 53  LLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIA-SECRPDLWTYNAMVSV 110

Query: 194 --SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
              C K    +L+ K L E    G +  AVTYN+++  + K    E +E     +V++G 
Sbjct: 111 HGRCGKAQEAELMFKELVEK---GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG- 166

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+     +  
Sbjct: 167 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 226

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V++ M      PT+VT++ +I  + K+G  +  E  F +M   G+KP+ + Y  ++  +
Sbjct: 227 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 286

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           +++    K+  + R +       D   +  +++A  +  +
Sbjct: 287 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 326



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 3/293 (1%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL++   +RQ    +    T+  L+    +    + A  +FE M++   +P +  Y A+
Sbjct: 49  VALELLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 107

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           VS +G+ G   EA     ++      +PD  TY+ L+ +  K    + +E++  E+   G
Sbjct: 108 VSVHGRCGKAQEAELMFKELVE-KGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG 166

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
                +TYNT+I  YGK  + +     +  M  + GC PD  T   ++ + G    I + 
Sbjct: 167 FRKDGITYNTMIHMYGKMGRLDLALGLYDEM-RAIGCTPDAVTYTVLVDSLGKMDRISEA 225

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K   E    G+K  + T + L  +Y ++G  D      D M +    P  + Y ++++ 
Sbjct: 226 GKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDV 285

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           F ++    K+   ++ M   G KP+   Y  L++A +K     +++ +++ +E
Sbjct: 286 FARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 338



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK--MRSVMDFMQKR 320
           +  Y  SG  +   +  +      ++ D+ + N L  +  ++G         ++  +++ 
Sbjct: 1   MGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQA 60

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P  +TYN +I    +  +++     F++M     +P+  TY ++VS + + G   + 
Sbjct: 61  GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 120

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + + +++       D   +N ++ A+ + GDVE++  +   + +     D IT+ TMI  
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 180

Query: 441 YNALGMTEAAQNLENKMIAM 460
           Y  +G  + A  L ++M A+
Sbjct: 181 YGKMGRLDLALGLYDEMRAI 200



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 121 MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +VML    +  +  +  +L+  M+ DG KP   +Y  L++A  +    DE    I DM++
Sbjct: 280 LVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEA 339

Query: 178 VSDCKPDVYTYSILIKS 194
           V +  P V + SILIK+
Sbjct: 340 VFEMNPLVIS-SILIKA 355


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 168/360 (46%), Gaps = 41/360 (11%)

Query: 117 FTKLMVMLGKCKQPE-QAS--LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           +T  +++   C   E QA+  LL E+    G+ P+  +Y   V A  +SG + EA   + 
Sbjct: 19  YTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVK 78

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +MK  + CKPDV T++ LI    K  R D  +++L EM   G   + VTYNT+I+G   A
Sbjct: 79  NMKDGA-CKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSA 137

Query: 234 KKFEEM------------ESSFSAMV--------------------ESGGCHPDIFTLNS 261
            +  E               +++A++                    +  GC PD FT + 
Sbjct: 138 GRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSI 197

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           +I+    S N+ K ++   E  ++G K   A +   N L   Y +A   D+ R ++  M 
Sbjct: 198 LINGLCKSSNLRKADELLQE--MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSML 255

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P VVTY+ +I+   + G ++K     +KM  RG KP+ +TY  LV+   KAG ++
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMV 315

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +++++       +   ++ +     +   ++   +L  +++++  V D + F T++
Sbjct: 316 EACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 7/279 (2%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEMESS 242
           D YTY +L+++            +L EM    G+  +   YN  +    K+ K  E    
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M + G C PD+ T N++I+    +G +++ ++  +E    G  A++ T N L     
Sbjct: 77  VKNM-KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNS 361
            AG   +   VM  M      P   TYN +I  F K+G I++   + ++MK R G  P++
Sbjct: 136 SAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDT 192

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            TY  L++   K+  + K D +L++ +   D       FN ++  Y +A D+++  EL  
Sbjct: 193 FTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLS 252

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +M E  C PD +T++T+I      G  +    L  KM++
Sbjct: 253 SMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVS 291


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 161/341 (47%), Gaps = 5/341 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           QA  L + M S G KP V  Y  LV+   + G LDEA   +N M S    +P+V T++I+
Sbjct: 34  QAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGS-QPNVITHNII 92

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           ++S     R+   EK+L EM   G   S VT+N +I+   +             M  + G
Sbjct: 93  LRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM-PTHG 151

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+  + N ++  +     +++  ++       G   DI T N +  +  + G  D   
Sbjct: 152 CTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAV 211

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ +  +   P ++TYN VI+   K G  ++  E   +M+ +G+KP+ ITY SL++  
Sbjct: 212 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGL 271

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           S+ G + +       VE   V  +   +N I+    +A   ++  +    M  + C P  
Sbjct: 272 SREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTE 331

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA---MKENSGKKLI 469
           +++  +I+     G+ + A  L N++ +   +K++S ++++
Sbjct: 332 VSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVV 372



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 38/279 (13%)

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-EE 238
           +C PDV TY+ILI            E   AE                  G G+A K  +E
Sbjct: 11  ECYPDVITYTILI------------EATCAE-----------------SGVGQAMKLLDE 41

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
           M S         GC PD+ T N +++     G +++  K+ N     G + ++ T NI+ 
Sbjct: 42  MGSR--------GCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIIL 93

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           +S    G +     ++  M ++   P+VVT+NI+I    + G + +  +  +KM   G  
Sbjct: 94  RSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCT 153

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PNS++Y  L+  + K   + +    L  + +     D   +N +++A  + G V+   EL
Sbjct: 154 PNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVEL 213

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              +  + C P  IT+ T+I   + +G T+ A  L ++M
Sbjct: 214 LNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEM 252



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  + +QA  L   M   GLKP V  Y++L++   + G ++EA    +D+
Sbjct: 228 TYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDV 287

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GK 232
           +     KP+ +TY+ ++    K  + D     LA M   G + + V+Y  +I+G    G 
Sbjct: 288 EGFG-VKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGL 346

Query: 233 AKKFEEM 239
           AK+  E+
Sbjct: 347 AKEALEL 353



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%)

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V+D   ++  +P V+TY I+IE       + +  +   +M  RG KP+ +TY  LV+   
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           K G + +    L  + +     +    N I+ +    G      +L   M  + C P  +
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 433 TFATMIQAYNALGMTEAAQNLENKM 457
           TF  +I      G+   A ++  KM
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKM 147



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKP 147
           ++ K + A+K F      + +  +   FT   +M G CK  Q ++A      M+S G KP
Sbjct: 273 REGKVEEAIKFF---HDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKP 329

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +   YT L+      GL  EA   +N++ S
Sbjct: 330 TEVSYTILIEGIANEGLAKEALELLNELCS 359


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 162/323 (50%), Gaps = 2/323 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
            F+ M  +G  P+V  Y  ++  Y +    DEAF  +  M  +   +P++ T++++I   
Sbjct: 5   FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSM-GLKGLEPNLITFNMIINGL 63

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  R     ++L EMS  G     VTYNT+++GY K   F +     + MV +G   P+
Sbjct: 64  CRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNG-LSPN 122

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T  S+I++   +GN+ +  +++++ ++ G+  + +T   +   + + G+ D+   V++
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLN 182

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +  F P++VTYN +I      G +E+     + M  +G+ P+ ++Y +++S +++  
Sbjct: 183 EMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQ 242

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + +   +  ++    V+ D   ++ +I    +   + +  ++F  M      PD  T+ 
Sbjct: 243 ELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYT 302

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           T+I AY   G    A +L ++MI
Sbjct: 303 TLINAYCKEGDLNKALHLHDEMI 325



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 156/348 (44%), Gaps = 21/348 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  + K     +A   F+ M   GL P+   YT +++ + Q GLLDEA+  +N+M
Sbjct: 125 TYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEM 184

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            + S   P + TY+ LI       R +    +L +M   G+    V+Y+TII G+ +   
Sbjct: 185 -TRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARN-- 241

Query: 236 FEEMESSFSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +E++ +F   VE  G    PD  T +S+I        + +    + E   + +  D  T
Sbjct: 242 -QELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFT 300

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L  +Y + G  +K   + D M ++ F P  VTYN++I    K    ++      K+ 
Sbjct: 301 YTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLF 360

Query: 354 HRGMKPNSITY---------------CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           +    P+++TY                +LV  +   GL+ + D +   + N +   +   
Sbjct: 361 YDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAI 420

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +N II  + + G+V K  +L+  M     VP  +T   +++A    GM
Sbjct: 421 YNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGM 468



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFTLNSMI 263
           +   EM   G   + VTYNT+IDGY K K+ +E   +F  +   G  G  P++ T N +I
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDE---AFGFLRSMGLKGLEPNLITFNMII 60

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     G +++  +   E +  G   D  T N L   Y + G + +   +   M +    
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVTY  +I +  KAG++ +  E+F +M  RG+ PN  TY ++++ +++ GL+ +   +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           L ++  S  I     +N +I+ +   G +E+   L   M  +  +PD ++++T+I  +
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGF 238



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 6/342 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVS 157
           FG LR            T  M++ G C+     E + +L E M   G  P    Y  LV+
Sbjct: 38  FGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVE-MSRKGYVPDEVTYNTLVN 96

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            Y + G   +A     +M   +   P+V TY+ LI S  K    +   +   +M   G+ 
Sbjct: 97  GYCKEGNFHQALVLHAEMVR-NGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLC 155

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            +  TY TII+G+ +    +E     + M  SG   P I T N++I+ +   G +E+   
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFI-PSIVTYNALINGHCVLGRMEEAIG 214

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
              +    GV  D+ + + +   + R    D+   +   M  +   P  VTY+ +I+   
Sbjct: 215 LLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLC 274

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           +   + +  + F++M    + P+  TY +L++AY K G + K   +  ++     + D  
Sbjct: 275 EQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAV 334

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            +N +I+   +    ++   L L +     +P  +T+ T+I+
Sbjct: 335 TYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIE 376


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 7/333 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E  + L++ M+ +G +P V  +  L+    + GL+  A   +NDM S + C P++ TY+ 
Sbjct: 362 EANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM-SANGCTPNLITYTT 420

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+    K ++ +    +L EMS  G E + + YN ++    K  K  +       M + G
Sbjct: 421 LLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKG 480

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C PDIFT N++I         E     Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 481 -CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEA 539

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M  R      +TYN +I+ F K G  EK    F +M  + + P++I+   L++ 
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G +     +LR + +  +  D   +N +I+   + G++ +   LF  ++     PD
Sbjct: 600 LCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPD 659

Query: 431 NITFATMIQAYNALGMTEAA-----QNLENKMI 458
            IT+ T+I  +   GM + A     + +EN  I
Sbjct: 660 AITYNTLICWHCRAGMFDDAYLLLLRGVENAFI 692



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 155/344 (45%), Gaps = 5/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM  L +  + ++A    +V+L+    P+   +T L++ Y +SG LDEA + + D 
Sbjct: 315 TYGVLMNGLCRVGKVDEA----QVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDK 370

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C+PDV+T++ LI    K         ++ +MS  G   + +TY T++DG+ K  +
Sbjct: 371 MIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQ 430

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE     + M  + G   +I   N ++ A   +G + K      E +  G K DI T N
Sbjct: 431 LEEAGYVLNEM-SAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFN 489

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +    +   ++   M         VTYN +I  F + G I++  +    M  R
Sbjct: 490 TLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFR 549

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G   + ITY  L+ A+ K G   K   +  ++   D++      N +I+   + G V   
Sbjct: 550 GCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNA 609

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            EL   M  R   PD +T+ ++I     +G    A NL NK+ A
Sbjct: 610 LELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQA 653



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 32/374 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  +M  L    + + A  L   M   G  P+  VY  L+ A  +   ++EA   + +M
Sbjct: 210 TFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEM 269

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +  C PDV T++ +I    + +R     K++  M + G   + +TY  +++G  +  K
Sbjct: 270 -FLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK 328

Query: 236 FEEMESSFSAM---------------VESG----------------GCHPDIFTLNSMIS 264
            +E +   + +               V+SG                GC PD+FT N++I 
Sbjct: 329 VDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIH 388

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G +       N+ +  G   ++ T   L   + +    ++   V++ M  + F  
Sbjct: 389 GLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFEL 448

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++ YN+++    K G + K  +   +M  +G KP+  T+ +L+    K        ++ 
Sbjct: 449 NIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALY 508

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           R +    VI +T  +N +I A+ + G +++  +L   M  R C  D IT+  +I+A+  L
Sbjct: 509 RDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKL 568

Query: 445 GMTEAAQNLENKMI 458
           G TE A  L ++M+
Sbjct: 569 GATEKALGLFDEMV 582



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 147/345 (42%), Gaps = 7/345 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF  ++  L +  +  + + L + ML  G  P+   Y  L++   + G +DEA   +N 
Sbjct: 279 DTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNK 338

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKA 233
           + +     P+   ++ILI    K  R D     L + M   G      T+NT+I G  K 
Sbjct: 339 VPT-----PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKK 393

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                     + M  + GC P++ T  +++  +     +E+     NE +  G + +I  
Sbjct: 394 GLMGSAVDMVNDM-SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMG 452

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N+L ++  + G   K   ++  M  +   P + T+N +I    K    E     ++ M 
Sbjct: 453 YNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML 512

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+  N++TY +L+ A+ + G I +   ++  +      LD   +N +I A+ + G  E
Sbjct: 513 LDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATE 572

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           K   LF  M  +  VP NI+   +I     +G    A  L   MI
Sbjct: 573 KALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMI 617



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 155/360 (43%), Gaps = 14/360 (3%)

Query: 108 QWYQAR---CQTFTKLMVMLGKCKQPEQASLLFEVMLS---DGLKPSVDVYTALVSAYGQ 161
           QW  ++   C TF    V++ K    ++  ++ +++L    +G+     ++  ++  YG+
Sbjct: 90  QWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGR 149

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           + L  +A   + DMK V  C+P   +Y++++      +   +   +  EM   G+  +  
Sbjct: 150 ANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVY 209

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           T+  ++       + +   S    M +  GC P+     ++I A      + +  K   E
Sbjct: 210 TFGVVMKALCMVNEVDNACSLLRDMTKH-GCVPNSVVYQTLIHALSKRDRVNEALKLLEE 268

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
             LMG   D+ T N +     R     +   ++D M  R F P  +TY +++    + G 
Sbjct: 269 MFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK 328

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL--RQVENSDVILDTPFF 399
           +++ +    K+      PN + +  L++ Y K+G + + ++ L  + ++N     D   F
Sbjct: 329 VDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNG-CRPDVFTF 383

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I    + G +    ++   M    C P+ IT+ T++  +      E A  + N+M A
Sbjct: 384 NTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA 443


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 163/328 (49%), Gaps = 4/328 (1%)

Query: 116 TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +T  +++ G CK  +  +A  +FE+++  GL P+  +Y  L++ Y Q   L  AF    
Sbjct: 334 AYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            MKS    +PD  TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG A
Sbjct: 394 QMKS-RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + E+  +  S M +  G   D+ +  S++ A+  +G I +     ++     V  + Q 
Sbjct: 453 GQLEKCFTVLSDM-QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQV 511

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +  +Y  +G  ++   +++ M+      ++VTYN++++   ++  I++ EE    ++
Sbjct: 512 YNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLR 571

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           ++G++P+ ++Y +++SA    G   K   +L+++    +       + ++SA   AG V 
Sbjct: 572 NQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVH 631

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAY 441
            M  L+  M  ++  P +  +  M+ AY
Sbjct: 632 DMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 171/392 (43%), Gaps = 70/392 (17%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + ML DG KP+V  Y  L+S   ++G +DE  + +++M S S   PD +TYSIL    
Sbjct: 251 LRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHS-MLPDGFTYSILFDGL 309

Query: 196 TKFHRFDLIEKILAE-----------------------------------MSYLGIECSA 220
           T+      +  + AE                                   + + G+  + 
Sbjct: 310 TRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTT 369

Query: 221 VTYNTIIDGYGKAKK-------FEEMES--------SFSAMV------------------ 247
           V YNT+I+GY + +        FE+M+S        +++A++                  
Sbjct: 370 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 429

Query: 248 -ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E  G  P + T N++I AYG +G +EK     ++    G+K+D+ +   + K++ + G 
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 489

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             +  +++D M  +   P    YN +I+ + ++G  E+     +KMK+ G+  + +TY  
Sbjct: 490 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNL 549

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    ++  I + + ++  + N  +  D   +N IISA    GD +K  EL   M +  
Sbjct: 550 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             P   T  T++ A  + G     + L  +M+
Sbjct: 610 IRPTLRTCHTLVSALASAGRVHDMECLYQQML 641



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 3/278 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +PD + ++ ++++C      D+   +L  M  S       A +YN +I G  ++ K  + 
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  MV+ G   P+  T N+MI  +   G++E   +  ++    G K ++ T N+L  
Sbjct: 214 LKVFDEMVDMG-VAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLS 272

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              R G  D+ R++MD M      P   TY+I+ +   + G  + M   F +   +G+  
Sbjct: 273 GLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVML 332

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            + T   L++   K G + K   +   + ++ ++  T  +N +I+ Y Q  D+     +F
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             MK RH  PD+IT+  +I     L M   A++L  +M
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 430



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 2/280 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K +   +A  L   M   G+ PSV+ +  L+ AYG +G L++ F+ ++DM
Sbjct: 406 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDM 465

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     K DV ++  ++K+  K  +      IL +M Y  +  +A  YN+IID Y ++  
Sbjct: 466 QQ-KGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 524

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M  SG     I T N ++     S  I++ E+        G++ D+ + N
Sbjct: 525 TEQALLLVEKMKNSG-VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 583

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +    G  DK   ++  M K    PT+ T + ++     AG +  ME  +++M H+
Sbjct: 584 TIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHK 643

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            ++P+S  Y  +V AY +     KV S+ +++    +  D
Sbjct: 644 NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 5/336 (1%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C    + ++ +G+      A   F ++++ G +P    +  +V A   +G LD A + + 
Sbjct: 125 CNLLLESLLFVGRHADVRAA---FGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLR 181

Query: 174 DM-KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            M +S     PD ++Y+++I    +  +     K+  EM  +G+  + +TYNT+IDG+ K
Sbjct: 182 RMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVK 241

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               E        M+  G   P++ T N ++S    +G +++     +E     +  D  
Sbjct: 242 GGDLEAGFRLRDQMLHDGP-KPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGF 300

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T +IL     R G    M S+     K+       T +I++    K G + K ++ F+ +
Sbjct: 301 TYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEML 360

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            H G+ P ++ Y +L++ Y +   +     I  Q+++  +  D   +N +I+   +   V
Sbjct: 361 VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMV 420

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            K  +L + M++    P   TF T+I AY   G  E
Sbjct: 421 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 116/243 (47%), Gaps = 2/243 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+   G   Q E+   +   M   G+K  V  + ++V A+ ++G + EA + ++D
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M    D  P+   Y+ +I +  +    +    ++ +M   G+  S VTYN ++ G  ++ 
Sbjct: 500 M-IYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E E     +  + G  PD+ + N++ISA  N G+ +K  +   E N  G++  ++T 
Sbjct: 559 QIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTC 617

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           + L  +   AG    M  +   M  +   P+   Y I+++ + +  +  K+    K+M  
Sbjct: 618 HTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSE 677

Query: 355 RGM 357
           +G+
Sbjct: 678 KGI 680



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P++ + N+++E+    G    +   F  +   G +P++  +  +V A   AG +    +
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 383 ILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +LR++  S+     D   +N +I+   ++G      ++F  M +    P+ IT+ TMI  
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 441 YNALGMTEAAQNLENKMI 458
           +   G  EA   L ++M+
Sbjct: 239 HVKGGDLEAGFRLRDQML 256


>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           fucata]
          Length = 382

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  GEM-KAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTTSYSTLLTMY 85

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 353
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 261

Query: 354 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 142

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 261

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      IV+  +GK    +K  + + +M+  G
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 426

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 177
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 178 --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK     K     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTLEHVKANNLI 242

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 162/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 63  AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +    K  
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIDQNVVTYNSMMMIYGKTLEHVKAN 239

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 297

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 298 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 455 NKM 457
            +M
Sbjct: 414 MEM 416



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 155/332 (46%), Gaps = 4/332 (1%)

Query: 127 CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+     A L+F  +   GL+P+   +  L++   +S  LDE F     M+  +   PD
Sbjct: 234 CKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE-NRIYPD 292

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V+TYS+LI    K  R D+ E++  EM   G+  + +T+  +IDG  ++++ +   +++ 
Sbjct: 293 VFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYH 352

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+ + G  PD+   N++++     G++ K  K  +E  ++G+K D  T   L   Y + 
Sbjct: 353 QML-TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKE 411

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G  +    +   M +       V +  +I  F + G +   E   ++M   GMKP+  TY
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             ++  Y K G +     +L++++ +        +N +++   + G ++    L   M  
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
               PD+IT+  +++ +   G  E    L N+
Sbjct: 532 LGVTPDDITYNILLEGHCKNGKAEDLLKLRNE 563



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 151/373 (40%), Gaps = 38/373 (10%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
            L   Q +Q  CQ+  + +V   +  +   AS+   ++ + G + S  V+ AL+ AY  S
Sbjct: 110 FLSAHQMFQ-ECQSIIRFLV--SRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDS 166

Query: 163 GLLDEAFST-----------------------INDMKSVS-----------DCKPDVYTY 188
           G + +A                          IN    V+              P V  Y
Sbjct: 167 GFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYY 226

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +ILI    K       + I  E+   G+  + V++NT+I+G  K++  +E        +E
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE-GFRLKKTME 285

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
               +PD+FT + +I      G ++  E+ ++E    G++ +  T   L     R+   D
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMD 345

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
              +    M      P +V YN ++    K G + K  +   +MK  GMKP+ ITY +L+
Sbjct: 346 SAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLI 405

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             Y K G +     I + +    V+LD   F  +IS + + G V         M E    
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMK 465

Query: 429 PDNITFATMIQAY 441
           PD+ T+  +I  Y
Sbjct: 466 PDDATYTMVIDGY 478



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 6/285 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ +  +A ++F  + QQ+  +    TFT L+    + ++ + A   +  ML+ G+KP +
Sbjct: 305 KEGRLDVAEQLFDEM-QQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDL 363

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y  L++   + G +++A   +++MK V   KPD  TY+ LI    K    +   +I  
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEMKMVG-MKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M+  G+    V +  +I G+ +  +  + E +   MVE+G   PD  T   +I  Y   
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG-MKPDDATYTMVIDGYCKK 481

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN++   K   E  + G K  + T N+L     + G       +++ M      P  +TY
Sbjct: 482 GNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           NI++E   K G   K E+  K    +G+  +   Y SLVS Y+K+
Sbjct: 542 NILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S F+A++++ G     F  ++++ AY +SG +    + +           ++  N     
Sbjct: 138 SVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRL---------VRNSNFQIPF 188

Query: 301 YGRAGMYDKM------RSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +G   + DKM       ++  F  +     F P V  YNI+I  F K G I   +  F +
Sbjct: 189 HGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNE 248

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           ++ RG++P ++++ +L++   K+  + +   + + +E + +  D   ++ +I    + G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           ++   +LF  M++R   P+ ITF  +I         ++A N  ++M+ M
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTM 357


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 199/465 (42%), Gaps = 63/465 (13%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQ 106
           A+K L+ + R  + + ++    + +   NL  K           Q   +L LK       
Sbjct: 25  ADKALTFLKRHPYQLHHLSANFTPEAASNLLLK----------SQNNQELILKFLTWANP 74

Query: 107 QQWYQARCQTFTKLMV---------------MLGKCKQPEQASLLFEVMLS--DGLKPSV 149
            Q++  RC+  T  ++               +  K    E ASL+F  +    D    + 
Sbjct: 75  HQFFTLRCKCITLHILTRFKLYKTAQTLAEDVAAKTLDDEDASLVFRSLQETYDLCNSTS 134

Query: 150 DVYTALVSAYGQSGLLDEAFS-----------------------TINDMKSVS------- 179
            V+  +V +Y +  L+D+A S                       TI   +++S       
Sbjct: 135 SVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 180 -----DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                   P+V+TY+ILI+        D+  +    M   G   + VTYNT+IDGY K +
Sbjct: 195 EMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR 254

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K ++      +M   G   P++ + N +I+     G ++++     E N  G   D  T 
Sbjct: 255 KIDDGFELLRSMALKG-LEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K Y + G + +   +   M +    P+V+TY  +I +  KAG++ +  E+  +M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG+ PN  TY +LV  +S+ G + +   +L+++ ++        +N +I+ +  AG +  
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVD 433

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              +   MKE+   PD ++++T++  +      + A  ++ KM+A
Sbjct: 434 AIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVA 478



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 175/378 (46%), Gaps = 8/378 (2%)

Query: 84  ALDEAIKQKK-WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVM 140
            LD  I+ K+    A  +F  + Q Q        FT  +++ G C     + A   F+ M
Sbjct: 175 VLDATIRSKRNISFAENVFKEMLQSQ---VSPNVFTYNILIRGFCLAGNLDVALRFFDRM 231

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G  P+V  Y  L+  Y +   +D+ F  +  M ++   +P++ +Y+++I    +  R
Sbjct: 232 EKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSM-ALKGLEPNLISYNVVINGLCREGR 290

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
              I  +L EM+  G     VTYNT+I GY K   F +     + M+  G   P + T  
Sbjct: 291 MKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG-LSPSVITYT 349

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+I +   +GN+ +  ++ ++  + G+  + +T   L   + + G  ++   V+  M   
Sbjct: 350 SLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDN 409

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P+VVTYN +I     AG +       + MK +G+ P+ ++Y +++S + ++  + + 
Sbjct: 410 GFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEA 469

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             + R++    +  DT  ++ +I  + +    ++  +LF  M      PD  T+  +I A
Sbjct: 470 LRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINA 529

Query: 441 YNALGMTEAAQNLENKMI 458
           Y   G  + A  L N+M+
Sbjct: 530 YCMEGDLQKAIQLHNEMV 547



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 145/343 (42%), Gaps = 59/343 (17%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +++ GL   ++ Y      F++   M        +A  + + M+ +G  PSV  Y AL++
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYM-------NEAYRVLKEMIDNGFSPSVVTYNALIN 423

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            +  +G + +A + + DMK      PDV +YS ++    + +  D   ++  +M   GI+
Sbjct: 424 GHCIAGKMVDAIAVLEDMKE-KGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIK 482

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
              +TY+++I G+ + ++ +E    F  M+  G   PD FT  ++I+AY   G+++K  +
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLFDEMLRVG-LPPDEFTYTALINAYCMEGDLQKAIQ 541

Query: 278 WYNEFNLMGVKADIQTLNILT--------------------------------------- 298
            +NE    GV  D+ T ++L                                        
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601

Query: 299 -----------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
                      K +   GM  +   V + M ++   P    YN++I    + G I K   
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYS 661

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +K+M   G   +++T  +LV    K G + +++S++  V  S
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRS 704


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 10/340 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K K+ EQA +    M+S G  P V  YTA++ A      L EA   + +M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +  +  P+V TY++LI    K  R D    +L++M    +  +AVTYN++I G  KA++
Sbjct: 73  AN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAER 130

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E       MV S GC PDIFT  ++I+ +  S   +   + + +    G + D+ T +
Sbjct: 131 ASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            L     + G   +++  +D   +        P  VTYN +I  F + G +++     ++
Sbjct: 190 CLIDGLCKEG---RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G  P+ +TY +L++ + K   +     +L Q+    +  D   F  ++    +   
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +     +   M+ + C P   T+ T++  Y      E A+
Sbjct: 307 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 154/384 (40%), Gaps = 36/384 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K+ + AL   G +   + +     T+T ++  L    +  +A    E M +  L P+V
Sbjct: 23  KVKRLEQALIFLGKM-VSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNV 81

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------------- 177
             YT L+    + G +DEA + ++ M+                                 
Sbjct: 82  VTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEM 141

Query: 178 -VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             S C PD++TY+ LI    K  + D   ++  ++   G     VTY+ +IDG  K  + 
Sbjct: 142 VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRL 201

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +E    F  M++SG C P+  T NS+IS +   G +++           G   D+ T   
Sbjct: 202 KEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + +    D    +++ M ++   P VVT+  +++   +   +        +M+ + 
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             P   TY +++  Y +A  + +    +  +E  D   +   FN +I    +     +  
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           EL    + R C PD + + T+I  
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDG 403



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 171/385 (44%), Gaps = 16/385 (4%)

Query: 74  KNLWPKPVLEA--LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131
           +NL P  V     +D   K  +   A+ +   +R++    A   T+  L+  L K ++  
Sbjct: 75  RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTA--VTYNSLISGLCKAERAS 132

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L E M+  G  P +  YT L++ + +S   D+A      + +    +PDV TYS L
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA-RGFRPDVVTYSCL 191

Query: 192 IKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           I    K  R     DL  +++   S +    + VTYN++I G+ +  K +E  +    M 
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMP---NTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+G   PD+ T  ++++ +     ++      N+    G+  D+ T   L     R    
Sbjct: 249 ETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRL 307

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
                ++  M+++   PTV TYN +++ + +A  +E+  ++   ++     PN +++  +
Sbjct: 308 SDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIM 365

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERH 426
           +    K     +   ++ +        D   +  +I    +   V++   ++  M +E  
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPG 425

Query: 427 CVPDNITFATMIQAYNALGMTEAAQ 451
           C+P++IT++T+I      GM + A+
Sbjct: 426 CLPNSITYSTLITGLCNAGMLDRAR 450



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 158/338 (46%), Gaps = 11/338 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPS 148
           K KK   AL++F  L   + ++    T++ L+  L K  + ++A  LF  M+  G   P+
Sbjct: 162 KSKKSDDALRVFEQL-VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPN 220

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              Y +L+S + + G +DEA + +  M       PDV TY+ L+    K  R D    +L
Sbjct: 221 TVTYNSLISGFCRMGKMDEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLL 279

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M+  G+    VT+ +++DG  +  +  +       M     C P ++T N+++  Y  
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEM-RRKSCSPTVYTYNTILDGYCR 338

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  +E+  K+  E   M    ++ + NI+ +   +     +   +++  ++R   P VV 
Sbjct: 339 ANQLEEARKFMLEE--MDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 396

Query: 329 YNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           Y  VI+   +   +++    ++KM +  G  PNSITY +L++    AG++ +    + + 
Sbjct: 397 YTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK- 455

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
                + +   +N +I A+ +A   E   EL   M +R
Sbjct: 456 ---GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 123/302 (40%), Gaps = 38/302 (12%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTK------------------FH----------------- 199
           M + + C  D  TY+ LI+   K                  FH                 
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R     K L EM+   +  + VTY  +IDG  K  + +E  +  S M +   C P   T 
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTY 118

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS+IS    +    +      E    G   DI T   L   + ++   D    V + +  
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIM 378
           R F P VVTY+ +I+   K G +++  + F +M   G   PN++TY SL+S + + G + 
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +  ++L ++  +    D   +  +++ + +   ++   +L   M  +   PD +TF +++
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298

Query: 439 QA 440
             
Sbjct: 299 DG 300



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT LM  L +  +   A  +   M      P+V  Y  ++  Y ++  L+EA      M
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF---M 349

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               DC P+V +++I+I+   K +R     +++ E          V Y T+IDG  + KK
Sbjct: 350 LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKK 409

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    +  M+E  GC P+  T +++I+   N+G +++   +  +    G   +I T N
Sbjct: 410 VDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK----GCVPNIGTYN 465

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +L  ++ +A   +  R ++D M +R F
Sbjct: 466 LLIDAFRKANRDEDARELLDDMVQRGF 492



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 218 CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           CSA  VTY ++I G  K K+ E+       MV S G HPD++T  ++I A      + + 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMV-SKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K+  E                                   M  R   P VVTY ++I+ 
Sbjct: 66  RKFLEE-----------------------------------MANRNLTPNVVTYTVLIDG 90

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G +++      KM+ + + P ++TY SL+S   KA    +   +L ++  S  I D
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +  +I+ + ++   +    +F  +  R   PD +T++ +I      G  + A +L  
Sbjct: 150 IFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG 209

Query: 456 KMI 458
           +MI
Sbjct: 210 RMI 212


>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 122 VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           VML  C +    E A  +   M + G+  +   Y ALV  YG++G L++ ++ I +M S 
Sbjct: 98  VMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM-SR 156

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               PD + YS +I        +    +I+ E+  +G+      YN+IID +GK  +  E
Sbjct: 157 DGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSE 216

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               F  M E G   PDI T NS+I  +  +G++ K  + +++    G+  D +    + 
Sbjct: 217 ALEVFEKMQEEG-VKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII 275

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              G  G +D ++   + M+ R    +   Y I+++ +G+ G  +  EE    +K  G++
Sbjct: 276 SRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQ 335

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P++  +C L +AY++ GL  +   +L+ +E   +  +    N +I+A+G AG   +   +
Sbjct: 336 PSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSV 395

Query: 419 FLTMKERHCVPDNITFATMIQA 440
           +  +K+    PD +T++T+++A
Sbjct: 396 YHHIKDTGISPDVVTYSTLMKA 417



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 8/321 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  L   M + G   S+  YT ++ A G  G   EA +   +M  +   K D+  Y++
Sbjct: 40  DKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLG-LKLDLRVYNV 98

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +++SC +    +L +K+LAEM  LGI  +  TY  ++D YG+A +  ++ +    M   G
Sbjct: 99  MLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDG 158

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD F  + +I  Y ++G  +K  +   E   MGV  D +  N +  ++G+ G   + 
Sbjct: 159 -FGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEA 217

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V + MQ+    P ++T+N +I+   KAG + K  E F KM+  G+ P+   + +++S 
Sbjct: 218 LEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISR 277

Query: 371 YSKAGLIMKVDSILRQVENSDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
             + G   K D I R  EN            +  ++  YGQ G  +   E    +K    
Sbjct: 278 LGEQG---KWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGI 334

Query: 428 VPDNITFATMIQAYNALGMTE 448
            P    F  +  AY   G+ E
Sbjct: 335 QPSASMFCVLANAYAQQGLCE 355



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 2/280 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y+  I+   +    D   K+LA+M  LG   S  +Y T+I+  G   +  E E+ F  M
Sbjct: 25  VYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREM 84

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           V  G    D+   N M+ +    G +E  +K   E + +G+  +  T   L   YGRAG 
Sbjct: 85  VHLG-LKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGR 143

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            + + +V+  M +  F P    Y+ VI  +   G  +K  E  ++++  G+  +   Y S
Sbjct: 144 LNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNS 203

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++  + K G + +   +  +++   V  D   +N +I  + +AGDV K  ELF  M+E  
Sbjct: 204 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEG 263

Query: 427 CVPDNITFATMIQAYNALGMTEA-AQNLENKMIAMKENSG 465
             PD   F T+I      G  +   +N EN      + SG
Sbjct: 264 LYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSG 303



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G E S V YN  I    +    ++     + M E+ G    + +  ++I A G+ G   +
Sbjct: 18  GEELSGVVYNARIRESCRVGDVDKAMKLLAQM-EALGFSLSLGSYTTVIEALGSVGRTLE 76

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            E  + E   +G+K D++  N++ +S  R G+ +    V+  M          TY  +++
Sbjct: 77  AEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVD 136

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +G+AG +  +     +M   G  P+S  Y  ++  Y   G+  K   I+R++    V L
Sbjct: 137 YYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSL 196

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   +N II  +G+ G++ +  E+F  M+E    PD +T+ ++IQ +   G    A  L 
Sbjct: 197 DKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELF 256

Query: 455 NKM 457
           +KM
Sbjct: 257 SKM 259



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 141/335 (42%), Gaps = 53/335 (15%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+ A++I   +R+      + + +  ++   GKC +  +A  +FE M  +G+KP +  + 
Sbjct: 179 WKKAMEIVREIREMGVSLDK-RIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWN 237

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           +L+  + ++G + +A    + M+      PD   +  +I    +  ++D+I++    M  
Sbjct: 238 SLIQWHCKAGDVGKALELFSKMQE-EGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKC 296

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
            G + S   Y  ++D YG+  +F+  E   SA+                           
Sbjct: 297 RGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSE------------------------ 332

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                       G++       +L  +Y + G+ ++   V+  M+     P ++  N++I
Sbjct: 333 ------------GIQPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLI 380

Query: 334 ETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
             FG AG H+E +  Y   +K  G+ P+ +TY +L+ A  +A    KV  I  ++E++  
Sbjct: 381 NAFGIAGRHLEALSVY-HHIKDTGISPDVVTYSTLMKACIRARKFDKVPEIYEEMESAGC 439

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
             D      + +A              L +++RHC
Sbjct: 440 TPDRKAREMLQTA-------------LLVLQQRHC 461



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%)

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G  DK   ++  M+   F  ++ +Y  VIE  G  G   + E  F++M H G+K +  
Sbjct: 35  RVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLR 94

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y  ++ +  + GL+   D +L +++   +  +   +  ++  YG+AG +  +  +   M
Sbjct: 95  VYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM 154

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 468
                 PD+  ++ +I  Y   GM + A  +  ++  M  +  K++
Sbjct: 155 SRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRI 200


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 2/310 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E    L+  ML  GLKP+V  Y  L+S   ++G + E  + +++M S     PD +TYSI
Sbjct: 240 ESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMAS-RKMVPDGFTYSI 298

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L    ++      +  +  E    G++  A T + +++G  K  K  + E     +V SG
Sbjct: 299 LFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSG 358

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
                +   N++I+ Y   G++E     + +     ++ D  T N L    G+     + 
Sbjct: 359 LLQTTVI-YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEA 417

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M+K    P+V T+N +I+ +G+AG +EK       M+ +G+KPN ++Y S+V+A
Sbjct: 418 HDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNA 477

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + K G I++  +IL  +   DV+     +N II AY + G  ++   L   MK     P 
Sbjct: 478 FCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPS 537

Query: 431 NITFATMIQA 440
            +T+  +I+ 
Sbjct: 538 IVTYNLLIKG 547



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 5/284 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 240
           +PD +T++  +++C      D    +L  M   G    +A +YN +I G  KA    +  
Sbjct: 149 RPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAV 208

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M E     P+  T N+MI  +   G++E   + +++    G+K ++ T N+L   
Sbjct: 209 KLFDEMPEKA-VVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSG 267

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             RAG   +  +V+D M  R   P   TY+I+ +   + G  + M   F++   +G+K  
Sbjct: 268 LCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIG 327

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           + T   L++   K G I K + +L+ + NS ++  T  +N +I+ Y Q GD+E    +F 
Sbjct: 328 AYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQ 387

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
            MK R   PD+IT+  +I   N LG  E      + +I M++N 
Sbjct: 388 QMKSRLIRPDHITYNALI---NGLGKVERITEAHDLVIEMEKNG 428



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 35/357 (9%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           FE++++   +P    +   V A   +G LDEA   +  M       P+ ++Y+++I    
Sbjct: 140 FELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLW 199

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE-------- 248
           K        K+  EM    +  + +TYNT+IDG+ K    E     +S M+         
Sbjct: 200 KAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVI 259

Query: 249 ------SGGCH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
                 SG C                     PD FT + +   +  +G+ + M   + E 
Sbjct: 260 TYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEES 319

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              GVK    T +IL     + G   K   V+  +       T V YN +I  + + G +
Sbjct: 320 VKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDL 379

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           E     F++MK R ++P+ ITY +L++   K   I +   ++ ++E + V      FN +
Sbjct: 380 EGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTL 439

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMI 458
           I AYG+AG +EK   +   M+E+   P+ +++ +++ A+   G + EA   L++  I
Sbjct: 440 IDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFI 496



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 160/347 (46%), Gaps = 39/347 (11%)

Query: 116 TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +T  +++ G CK  +  +A  + + +++ GL  +  +Y  L++ Y Q G L+ AFS   
Sbjct: 328 AYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQ 387

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            MKS    +PD  TY+ LI    K  R      ++ EM   G+  S  T+NT+ID YG+A
Sbjct: 388 QMKS-RLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRA 446

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM---------------EKW 278
            + E+     S M E G   P++ +  S+++A+  +G I +                 + 
Sbjct: 447 GQLEKCFIILSDMQEKG-LKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQV 505

Query: 279 YNE--------------FNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           YN               F L       GV   I T N+L K   +     +   ++D ++
Sbjct: 506 YNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLR 565

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P V++YN +I       + ++  E  K+M   G+KP+  TY  L S+   AG + 
Sbjct: 566 NYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVH 625

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +++++ +Q+ + DV+  +  +N ++ AY + G+  K+  L   M ++
Sbjct: 626 EMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDK 672



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 5/254 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+   G+  Q E+  ++   M   GLKP+V  Y ++V+A+ ++G + EA + ++D
Sbjct: 434 ETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDD 493

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M  + D  P    Y+ +I +  +    D    +  +M   G+  S VTYN +I G  K  
Sbjct: 494 M-FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQS 552

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E E    ++  + G  PD+ + N++ISA     N ++  +   E    G+K   +T 
Sbjct: 553 QISEAEELLDSL-RNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTY 611

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            +L  S G AG   +M ++   M  +   P    YNI+++ + K G   K+E   K+M  
Sbjct: 612 RMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSD 671

Query: 355 RGMKPN---SITYC 365
           +G+      S+T C
Sbjct: 672 KGIAVGDYTSMTNC 685


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 147/293 (50%), Gaps = 2/293 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+  +   G   Q E+A  L + M  +G+ P+   ++A VSA G++G    A + +  M
Sbjct: 149 TFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRM 208

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++ ++C P+V TY+  I +C K   + L + +LAEM   G+  + +T+N+ I   G   +
Sbjct: 209 RA-ANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQ 267

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E  +    M  S G  P++++  + ++A G++    +    + +    G++ D  +  
Sbjct: 268 WQEALNLLRDM-PSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFT 326

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               +  + G ++   +++D M+     PTV +++  I   GK     +     ++M+  
Sbjct: 327 AAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEV 386

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           G+ PN +++ + + A  +AG      S+L ++ ++ V   T  +N +I+A G+
Sbjct: 387 GVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGK 439



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 2/310 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  L   M + GL P+V  +++ V+A G +G  + A   ++ M       P+ +T+S 
Sbjct: 129 QRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAE-EGVPPNEFTFSA 187

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
            + +C K  ++     IL  M       +  TY   ID  GKA ++   +   + M E G
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P++ T NS ISA GN G  ++      +   MGV+ ++ +      + G    + + 
Sbjct: 248 -VAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARA 306

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
            +V + M+ R      V++   I+   + G  E       +M+  G+ P   ++ + +SA
Sbjct: 307 LAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISA 366

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K     +  ++LR++E   V  +   FN  I A G+AG       L   M        
Sbjct: 367 CGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRG 426

Query: 431 NITFATMIQA 440
            IT+  +I A
Sbjct: 427 TITYNAVIAA 436



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 173/394 (43%), Gaps = 11/394 (2%)

Query: 72  KYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131
           + +N     +++ L    ++ +W+ AL    L R+         T++ LM  + +  + E
Sbjct: 28  RQRNRRRSKLIQTLKSQGRKGQWKEALTAANLAREDG-VVFDVYTYSVLMSAVARSGRWE 86

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-------LLDE-AFSTINDMKSVSDCKP 183
           +  +L +VM S+G+ P    + A V+A  + G       LLD+ A   + +M +V    P
Sbjct: 87  EVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVG-LSP 145

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V T+S  + +C    +++    +L +M+  G+  +  T++  +   GKA ++    +  
Sbjct: 146 NVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTIL 205

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M  +  C P++ T  + I A G +G     +    E    GV  ++ T N    + G 
Sbjct: 206 RRM-RAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGN 264

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G + +  +++  M      P + +Y   +   G      +     ++M+ RG++ + ++
Sbjct: 265 GGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVS 324

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           + + + A ++ G      ++L ++ +  +      F+  ISA G+     +   L   M+
Sbjct: 325 FTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREME 384

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E    P+ ++F   I A    G   AA +L +KM
Sbjct: 385 EVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKM 418



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 8/214 (3%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D++T + ++SA   SG  E++    +     GV  D         +  + G +++  +++
Sbjct: 68  DVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALL 127

Query: 315 DFMQKRFF--------FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           D    R           P V T++  +   G AG  E+      +M   G+ PN  T+ +
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSA 187

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
            VSA  KAG      +ILR++  ++   +   +   I A G+AG+      L   M+E+ 
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             P+ ITF + I A    G  + A NL   M +M
Sbjct: 248 VAPNVITFNSAISALGNGGQWQEALNLLRDMPSM 281



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W  AL +   +R +   +    +FT  +    +    E A  L + M  +G+ P+V  +
Sbjct: 302 RWARALAVHEQMRSRG-IRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSF 360

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           +  +SA G+      A + + +M+ V    P+  +++  I +C +  ++     +L +MS
Sbjct: 361 STAISACGKGQQWGRAVALLREMEEVG-VSPNEVSFNAAIDACGRAGQWRAALSLLDKMS 419

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-----GGCHP----DIFTLNSMI 263
             G+    +TYN +I   GK K++    S    M+       G   P    D+ + ++ I
Sbjct: 420 SAGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAI 479

Query: 264 SAYGNSGNIEK 274
            A   +G  E+
Sbjct: 480 DACVRAGEWEE 490


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 173/345 (50%), Gaps = 10/345 (2%)

Query: 102 GLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           GL R+    +A CQ    T++ ++  L K ++  +A  +F  M + G+ P++  Y +L+ 
Sbjct: 248 GLFRKMG--EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 305

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGI 216
                    EA + +N+M S+ +  P++ T+S+LI   C + + F+    +L  M+ +G+
Sbjct: 306 GLCNFSRWREASAMLNEMMSL-NIMPNIVTFSLLINIFCKEGNVFE-ARGVLKTMTEMGV 363

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + VTY+++++GY    +  E    F  M+ + GC PD+F+ N +I+ Y  +  I + +
Sbjct: 364 EPNVVTYSSLMNGYSLQAEVVEARKLFDVMI-TKGCKPDVFSYNILINGYCKAKRIGEAK 422

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + +NE    G+  DI + N L     + G   +   +   M      P + TY+I+++ F
Sbjct: 423 QLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGF 482

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K G++ K    F+ M+   +KPN + Y  L+ A  K+  + +   +  ++    +  + 
Sbjct: 483 CKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNV 542

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +  II+   + G +++  E F  M+E  C P+  ++  +I+ +
Sbjct: 543 QIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGF 587



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 166/351 (47%), Gaps = 6/351 (1%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           + YQ    T+T ++  L K  +   A+ LF  M   G +P V  Y+ ++ +  +   ++E
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 280

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A    + MK+     P+++TY+ LI+    F R+     +L EM  L I  + VT++ +I
Sbjct: 281 ALDIFSYMKA-KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 339

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           + + K     E       M E G   P++ T +S+++ Y     + +  K ++     G 
Sbjct: 340 NIFCKEGNVFEARGVLKTMTEMG-VEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGC 398

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           K D+ + NIL   Y +A    + + + + M  +   P +V+YN +I+   + G + +  +
Sbjct: 399 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 458

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            FK M   G  P+  TY  L+  + K G + K   + R ++++ +  +   +N +I A  
Sbjct: 459 LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC 518

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAAQNLE 454
           ++ ++++  +LF  +  +   P+   + T+I      G+     EA +N+E
Sbjct: 519 KSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 569



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 34/365 (9%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           +  + A   F  ML    +P +  +  L+SA  +     +A  +++    ++   PD YT
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
             +LI    +  R DL   +LA++  LG++ + VT+NT+I+G  K  KF +    F  MV
Sbjct: 160 LHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMV 219

Query: 248 ESG----------------------------------GCHPDIFTLNSMISAYGNSGNIE 273
             G                                  GC PD+ T +++I +      + 
Sbjct: 220 ARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVN 279

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           +    ++     G+  +I T N L +       + +  ++++ M      P +VT++++I
Sbjct: 280 EALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 339

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
             F K G++ +     K M   G++PN +TY SL++ YS    +++   +   +      
Sbjct: 340 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCK 399

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I+ Y +A  + +  +LF  M  +   PD +++ T+I     LG    A +L
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDL 459

Query: 454 ENKMI 458
              M+
Sbjct: 460 FKNML 464



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 172/388 (44%), Gaps = 14/388 (3%)

Query: 78  PKPVL----EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK-QPEQ 132
           P+P +    + L   +K + +  A  +  L +Q +       T+T  + ML  C  Q ++
Sbjct: 117 PRPCIIQFNKLLSAIVKMRHYHDA--VISLSKQMELAGLSPDTYT--LHMLINCFFQLQR 172

Query: 133 ASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
             L F V+   +  GL+ ++  +  L++   + G   +A    +DM +    +PDV+TY+
Sbjct: 173 VDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA-RGYQPDVHTYT 231

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            +I    K         +  +M   G +   VTY+TIID   K ++  E    FS M ++
Sbjct: 232 TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYM-KA 290

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  P+IFT NS+I    N     +     NE   + +  +I T ++L   + + G   +
Sbjct: 291 KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFE 350

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
            R V+  M +    P VVTY+ ++  +     + +  + F  M  +G KP+  +Y  L++
Sbjct: 351 ARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILIN 410

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            Y KA  I +   +  ++ +  +  D   +N +I    Q G + +  +LF  M     +P
Sbjct: 411 GYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP 470

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D  T++ ++  +   G    A  L   M
Sbjct: 471 DLCTYSILLDGFCKQGYLAKAFRLFRAM 498



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 99/240 (41%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           + +N ++    K + + +   S S  +E  G  PD +TL+ +I+ +     ++       
Sbjct: 122 IQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLA 181

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +   +G++  I T N L     + G + +   + D M  R + P V TY  +I    K G
Sbjct: 182 KIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIG 241

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
                   F+KM   G +P+ +TY +++ +  K   + +   I   ++   +  +   +N
Sbjct: 242 ETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYN 301

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I          +   +   M   + +P+ +TF+ +I  +   G    A+ +   M  M
Sbjct: 302 SLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEM 361



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYN-------EFNLMGVKADIQTLNILTKSYGRAG 305
            P I   N ++SA      I KM  +++       +  L G+  D  TL++L   + +  
Sbjct: 118 RPCIIQFNKLLSA------IVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQ 171

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D   SV+  + K     T+VT+N +I    K G   +  E F  M  RG +P+  TY 
Sbjct: 172 RVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYT 231

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           ++++   K G  +    + R++  +    D   ++ II +  +   V +  ++F  MK +
Sbjct: 232 TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              P+  T+ ++IQ          A  + N+M+++
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL 326


>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rehmannii]
          Length = 379

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 5/272 (1%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  Y + KKF E
Sbjct: 34  SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLE 93

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L 
Sbjct: 94  ALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 152

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ RG++
Sbjct: 153 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 212

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     L
Sbjct: 213 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 272

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +K     PDNI   T I      G  E A
Sbjct: 273 LHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 174/377 (46%), Gaps = 43/377 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I +MK
Sbjct: 8   YSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 67

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 68  T-AGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 126

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 127 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ---- 408
             G++ + I + +++ AY +AGL+     +L +++  D I  DT     I++  G+    
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAGAGRIEEA 300

Query: 409 ---------AGDVEKMG-------------------ELFLTMKERHCVPDNITFATMIQA 440
                    AG+V+ +                    E+F  M+     PD+   A ++ A
Sbjct: 301 TYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNA 360

Query: 441 YNALGMTEAAQNLENKM 457
           Y  L   + A ++  +M
Sbjct: 361 YGKLQXFDKANDVYMEM 377



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  GEM-KTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 151/362 (41%), Gaps = 40/362 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 24  AIAIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLL 82

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 83  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 141

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 142 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++S G  P+  T +++IS +G  G +++    + +    GV+ D      +  +Y 
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +  I     AG IE+    F++    G   +  
Sbjct: 262 RAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++   SK      V  +  ++       D+     +++AYG+    +K  ++++ M
Sbjct: 318 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVYMEM 377

Query: 423 KE 424
           +E
Sbjct: 378 QE 379



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 36/297 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 142

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + + +M+
Sbjct: 322 MIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVYMEMQ 378


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+  L    +   A  LF+ M+  G +P V  Y+ +++   + G    A   +  M
Sbjct: 49  TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKM 108

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    CKP+V  YS +I S  K        + L+EM   GI  + VTY++I+ G+    +
Sbjct: 109 EE-KGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E  S F  MVE     PD  T N ++      G I + +  +      GV+ ++ T N
Sbjct: 168 SNEATSLFKQMVERN-VMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYN 226

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y      D+ + + + M ++   P+V +YNI+I+   K+G I++ +    +M H+
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHK 286

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+++TY +L+  + + G       +L ++ +  ++ D   ++ ++    + G +++ 
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEA 346

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            EL   M+E    P+   +  +IQ     G  EAA+ L
Sbjct: 347 FELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAREL 384



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 170/361 (47%), Gaps = 3/361 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+K+F  +  +  Y+    T++ ++  L K      A  L + M   G KP+V VY+ ++
Sbjct: 66  AVKLFDEM-VKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            +  +  L+ EA   +++M +     P+V TYS ++       R +    +  +M    +
Sbjct: 125 DSLCKDKLITEAMEFLSEMVN-RGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNV 183

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
               VT+N ++DG  K     E +  F  M+E G   P++ T N+++  Y +   +++ +
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKG-VEPNVNTYNALMDGYCSQSQMDEAQ 242

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K +N     G    +++ NIL K + ++G  D+ + ++  M  +   P  VTY+ +++ F
Sbjct: 243 KLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGF 302

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            + G  +  ++  ++M+  G+ P+ +TY  ++    K G + +   +L+ ++ S +  + 
Sbjct: 303 CQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNI 362

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +  +I      G +E   ELF  +  +   PD +T+  MI      G++  A  L   
Sbjct: 363 FIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRD 422

Query: 457 M 457
           M
Sbjct: 423 M 423



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 148/320 (46%), Gaps = 2/320 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M++ G+ P+V  Y++++  +   G  +EA S    M    +  PD  T++IL+   +K  
Sbjct: 143 MVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE-RNVMPDTVTFNILVDGLSKEG 201

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                + +   M   G+E +  TYN ++DGY    + +E +  F+ MV  G C P + + 
Sbjct: 202 MILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG-CAPSVRSY 260

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N +I  +  SG I++ +    E +   +  D  T + L K + + G     + +++ M+ 
Sbjct: 261 NILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRS 320

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P ++TY+IV++   K GH+++  E  K M+   ++PN   Y  L+      G +  
Sbjct: 321 YGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEA 380

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +   +    +  D   +  +IS   + G   +  ELF  M    C+P++ T+  +IQ
Sbjct: 381 ARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQ 440

Query: 440 AYNALGMTEAAQNLENKMIA 459
            +   G T  A  L  +M+ 
Sbjct: 441 GFLRNGDTSNAGRLIEEMVG 460



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 2/260 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L K     +A  +FE M+  G++P+V+ Y AL+  Y     +DEA    N M
Sbjct: 189 TFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIM 248

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P V +Y+ILIK   K  R D  + +LAEMS+  +    VTY+T++ G+ +  +
Sbjct: 249 VR-KGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGR 307

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++ +     M  S G  PD+ T + ++      G++++  +         ++ +I    
Sbjct: 308 PQDAQKLLEEM-RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYT 366

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL +     G  +  R +   +  +   P VVTY ++I    K G   +  E F+ M   
Sbjct: 367 ILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVH 426

Query: 356 GMKPNSITYCSLVSAYSKAG 375
           G  PNS TY  ++  + + G
Sbjct: 427 GCLPNSCTYNVIIQGFLRNG 446



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 4/258 (1%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +M G C Q   ++A  LF +M+  G  PSV  Y  L+  + +SG +DEA   + +M S  
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM-SHK 286

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
              PD  TYS L+K   +  R    +K+L EM   G+    +TY+ ++DG  K    +E 
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEA 346

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
                AM ES    P+IF    +I    N G +E   + ++   + G++ D+ T  ++  
Sbjct: 347 FELLKAMQESK-IEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMIS 405

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              + G+ ++   +   M      P   TYN++I+ F + G         ++M  RG   
Sbjct: 406 GLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSA 465

Query: 360 NSITYCSLVSAYSKAGLI 377
           +S T+  L    S+  +I
Sbjct: 466 DSSTFQMLSDLESRDEII 483



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 130/282 (46%), Gaps = 3/282 (1%)

Query: 178 VSDCKPDVYTYSILIKS-CTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S+ +PDVYT +ILI   C   H  F     +L  M  LG++ + VT++T+++G     K
Sbjct: 3   LSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAK 62

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    F  MV+  G  PD+ T +++I+     G+     +   +    G K ++   +
Sbjct: 63  IIDAVKLFDEMVKM-GYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYS 121

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  S  +  +  +    +  M  R   P VVTY+ ++  F   G   +    FK+M  R
Sbjct: 122 TIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER 181

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            + P+++T+  LV   SK G+I++   +   +    V  +   +N ++  Y     +++ 
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +LF  M  + C P   ++  +I+ +   G  + A+ L  +M
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM 283



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 144/315 (45%), Gaps = 4/315 (1%)

Query: 145 LKPSVDVYTALVSAYGQSGL--LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           ++P V   T L++ +  S       AFS + +M  +   +P+  T+S L+   +   +  
Sbjct: 6   IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLG-LQPNHVTFSTLLNGLSSKAKII 64

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              K+  EM  +G E   +TY+TII+G  K      M       +E  GC P++   +++
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGS-TTMAIQLLKKMEEKGCKPNVVVYSTI 123

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I +      I +  ++ +E    G+  ++ T + +   +   G  ++  S+   M +R  
Sbjct: 124 IDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNV 183

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  VT+NI+++   K G I + +  F+ M  +G++PN  TY +L+  Y     + +   
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +   +           +N +I  + ++G +++   L   M  +   PD +T++T+++ + 
Sbjct: 244 LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303

Query: 443 ALGMTEAAQNLENKM 457
             G  + AQ L  +M
Sbjct: 304 QDGRPQDAQKLLEEM 318



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMR---SVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           +L  ++ D+ TL IL   +  +  +D      SV+  M K    P  VT++ ++      
Sbjct: 2   DLSNIRPDVYTLTILINCFCHSN-HDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             I    + F +M   G +P+ ITY ++++   K G       +L+++E      +   +
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + II +  +   + +  E    M  R   P+ +T+++++  +  LG +  A +L  +M+
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMV 179


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  L+  L K ++P  A  L  VM ++G   SV  YT L+    +SG LD A + +  M 
Sbjct: 13  YNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMA 72

Query: 177 SVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             + C P+V TY+ LI    K  R  D I+ +   M   G E   VTYN++I G   A +
Sbjct: 73  D-AGCAPNVVTYTALIDGLCKARRPHDAIQTV-KRMLRSGCEPDLVTYNSLIHGLCMANR 130

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       ++   G  PD+ T N+ IS    +G ++K  +   E +  G+  D+ T  
Sbjct: 131 MDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFC 190

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +     +A   D    V   M +R   P  +TY+I+++   +A  ++ +EE  + M   
Sbjct: 191 SIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKS 250

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G    S TY  L+ A  +AG I        Q   +  +++    N  I A  ++G     
Sbjct: 251 GHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLA 310

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             + L M E   +P+ +++  +I      G  + A  L  KM+
Sbjct: 311 KNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 353



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 175/409 (42%), Gaps = 41/409 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K +K + AL++  ++     Y A   T+T L+  L K    + A  L + M   G  P+V
Sbjct: 22  KARKPRHALELLHVM-AANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNV 80

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             YTAL+    ++    +A  T+  M   S C+PD+ TY+ LI      +R D    +L 
Sbjct: 81  VTYTALIDGLCKARRPHDAIQTVKRMLR-SGCEPDLVTYNSLIHGLCMANRMDDAGLVLQ 139

Query: 210 E-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           E M   G     VTYNT I G  KA K ++       M + GG  PD+ T  S+IS    
Sbjct: 140 ELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEM-DRGGISPDVVTFCSIISGLCK 198

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  I+   + +      G   D  T +I+  +  RA   D +  V++ M K   +    T
Sbjct: 199 ANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSAT 258

Query: 329 YNIVIETFGKAGHIEK--------------MEEY---------------------FKKMK 353
           Y  +I    +AG IE               ME Y                        M 
Sbjct: 259 YAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMI 318

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDV 412
             G  PN ++Y  ++    K+G +     + R++ +S     D  FFN +IS + +AG +
Sbjct: 319 ESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRL 378

Query: 413 EKMGELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +  +L   MK ++ CVPD +T+ TMI   +  G  + A+ L  +M A+
Sbjct: 379 SQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAV 427



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 108/259 (41%), Gaps = 37/259 (14%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           + D   Y+ LI    K  +     ++L  M+  G + S VTY T+IDG  K+   +  ++
Sbjct: 7   RLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQA 66

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
               M ++ GC P++ T  ++I     +       +        G + D+ T N L    
Sbjct: 67  LLQKMADA-GCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGL 125

Query: 302 GRAGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             A   D    V+ + M +    P VVTYN  I    KAG ++K  E  ++M   G+ P+
Sbjct: 126 CMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +T+CS++S   KA  I                 D  F                  ++F 
Sbjct: 186 VVTFCSIISGLCKANRI-----------------DDAF------------------QVFK 210

Query: 421 TMKERHCVPDNITFATMIQ 439
            M ER CVPD++T++ M+ 
Sbjct: 211 GMLERGCVPDSLTYSIMLD 229



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 119/278 (42%), Gaps = 39/278 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+   +  L K  + ++   + E M   G+ P V  + +++S   ++  +D+AF     M
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGM 212

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-------------------- 215
                C PD  TYSI++ + ++ +R D +E++L  M   G                    
Sbjct: 213 LE-RGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGD 271

Query: 216 -----------IECSAV----TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                      +E   V    T+N  I    ++ KF   ++    M+ESG   P++ + N
Sbjct: 272 IESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSL-PNLLSYN 330

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ- 318
            +I     SGN++   K   +    G  K D+   N L   + +AG   + + ++  M+ 
Sbjct: 331 FVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKA 390

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           K    P VVTYN +I+   K G +++ +   ++M+  G
Sbjct: 391 KNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 10/340 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K K+ EQA +    M+S G  P V  YTA++ A      L EA   + +M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +  +  P+V TY++LI    K  R D    +L++M    +  +AVTYN++I G  KA++
Sbjct: 73  AN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAER 130

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E       MV S GC PDIFT  ++I+ +  S   +   + + +    G + D+ T +
Sbjct: 131 ASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            L     + G   +++  +D   +        P  VTYN +I  F + G +++     ++
Sbjct: 190 CLIDGLCKEG---RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G  P+ +TY +L++ + K   +     +L Q+    +  D   F  ++    +   
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +     +   M+ + C P   T+ T++  Y      E A+
Sbjct: 307 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 154/384 (40%), Gaps = 36/384 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K+ + AL   G +   + +     T+T ++  L    +  +A    E M +  L P+V
Sbjct: 23  KVKRLEQALIFLGKM-VSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNV 81

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------------- 177
             YT L+    + G +DEA + ++ M+                                 
Sbjct: 82  VTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEM 141

Query: 178 -VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             S C PD++TY+ LI    K  + D   ++  ++   G     VTY+ +IDG  K  + 
Sbjct: 142 VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRL 201

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +E    F  M++SG C P+  T NS+IS +   G +++           G   D+ T   
Sbjct: 202 KEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + +    D    +++ M ++   P VVT+  +++   +   +        +M+ + 
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             P   TY +++  Y +A  + +    +  +E  D   +   FN +I    +     +  
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
           EL    + R C PD + + T+I  
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDG 403



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 158/338 (46%), Gaps = 11/338 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPS 148
           K KK   AL++F  L   + ++    T++ L+  L K  + ++A  LF  M+  G   P+
Sbjct: 162 KSKKSDDALRVFEQL-VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPN 220

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              Y +L+S + + G +DEA + +  M       PDV TY+ L+    K  R D    +L
Sbjct: 221 TVTYNSLISGFCRMGKMDEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLL 279

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M+  G+    VT+ +++DG  +  +  +       M     C P ++T N+++  Y  
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEM-RRKSCSPTVYTYNTILDGYCR 338

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  +E+  K+  E   M    ++ + NI+ +   +     +   +++  ++R   P VV 
Sbjct: 339 ANQLEEARKFMLEE--MDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 396

Query: 329 YNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           Y  VI+   +   +++    ++KM +  G  PNSITY +LV+    AG++ +    + + 
Sbjct: 397 YTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK- 455

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
                + +   +N +I A+ +A   E   EL   M +R
Sbjct: 456 ---GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 171/385 (44%), Gaps = 16/385 (4%)

Query: 74  KNLWPKPVLEA--LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131
           +NL P  V     +D   K  +   A+ +   +R++    A   T+  L+  L K ++  
Sbjct: 75  RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTA--VTYNSLISGLCKAERAS 132

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L E M+  G  P +  YT L++ + +S   D+A      + +    +PDV TYS L
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA-RGFRPDVVTYSCL 191

Query: 192 IKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           I    K  R     DL  +++   S +    + VTYN++I G+ +  K +E  +    M 
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMP---NTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+G   PD+ T  ++++ +     ++      N+    G+  D+ T   L     R    
Sbjct: 249 ETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRL 307

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
                ++  M+++   PTV TYN +++ + +A  +E+  ++   ++     PN +++  +
Sbjct: 308 SDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIM 365

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERH 426
           +    K     +   ++ +        D   +  +I    +   V++   ++  M +E  
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPG 425

Query: 427 CVPDNITFATMIQAYNALGMTEAAQ 451
           C+P++IT++T++      GM + A+
Sbjct: 426 CLPNSITYSTLVTGLCNAGMLDRAR 450



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 123/302 (40%), Gaps = 38/302 (12%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTK------------------FH----------------- 199
           M + + C  D  TY+ LI+   K                  FH                 
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R     K L EM+   +  + VTY  +IDG  K  + +E  +  S M +   C P   T 
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTY 118

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS+IS    +    +      E    G   DI T   L   + ++   D    V + +  
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIM 378
           R F P VVTY+ +I+   K G +++  + F +M   G   PN++TY SL+S + + G + 
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +  ++L ++  +    D   +  +++ + +   ++   +L   M  +   PD +TF +++
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298

Query: 439 QA 440
             
Sbjct: 299 DG 300



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 7/207 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT LM  L +  +   A  +   M      P+V  Y  ++  Y ++  L+EA      M
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF---M 349

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               DC P+V +++I+I+   K +R     +++ E          V Y T+IDG  + KK
Sbjct: 350 LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKK 409

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    +  M+E  GC P+  T +++++   N+G +++   +  +    G   +I T N
Sbjct: 410 VDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK----GCVPNIGTYN 465

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +L  ++ +A   +  R ++D M +R F
Sbjct: 466 LLIDAFRKANRDEDARELLDDMVQRGF 492



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 218 CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           CSA  VTY ++I G  K K+ E+       MV S G HPD++T  ++I A      + + 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMV-SKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K+  E                                   M  R   P VVTY ++I+ 
Sbjct: 66  RKFLEE-----------------------------------MANRNLTPNVVTYTVLIDG 90

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G +++      KM+ + + P ++TY SL+S   KA    +   +L ++  S  I D
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +  +I+ + ++   +    +F  +  R   PD +T++ +I      G  + A +L  
Sbjct: 150 IFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG 209

Query: 456 KMI 458
           +MI
Sbjct: 210 RMI 212


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 179/384 (46%), Gaps = 42/384 (10%)

Query: 95  QLALKIFG-LLRQQQWYQARCQ--TFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSV 149
            +ALK+   +L     Y+  C+    T  +++ G CK  + ++A  LFE M + G+ PS+
Sbjct: 191 NIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSI 250

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +L+  +  +G  +E+   +++M      +PD+ T+++LI +  K  +    +K+L 
Sbjct: 251 ISYNSLIHGFCCAGKWEESKRLLDEMLD-QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLG 309

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   GI    VTYN++I+G+            F +M  S GC PD+ + N +I+ Y  +
Sbjct: 310 VMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM-PSKGCEPDVISYNVLINGYSKT 368

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +E+  K YNE  L+G + ++ T + L K    AG  D  + +   M+         TY
Sbjct: 369 LKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTY 428

Query: 330 -----------------------------------NIVIETFGKAGHIEKMEEYFKKMKH 354
                                              N +I+   KAG +E   E F+K+ +
Sbjct: 429 GIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSN 488

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +PN +TY  ++  + + G + K + +++++E +    D   +N ++  + ++  +E+
Sbjct: 489 EGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEE 548

Query: 415 MGELFLTMKERHCVPDNITFATMI 438
           + +L   M ++   PD IT + ++
Sbjct: 549 VVQLLHRMAQKDVSPDAITCSIVV 572



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 8/328 (2%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F +M+     PS+  +  L+S   +     + FS  N M+ +S    D  T +IL+    
Sbjct: 57  FHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMR-LSGLSSDRCTLNILLNCLC 115

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
             +R        A +   G   + VTYNT+I G     +  E    F  M +  GC PD+
Sbjct: 116 NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM-QKLGCTPDV 174

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEF------NLMGVKADIQTLNILTKSYGRAGMYDKM 310
            T  ++I     +GNI    K + E         +  K ++ T NI+     + G  D+ 
Sbjct: 175 VTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEA 234

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + + + M+ +   P++++YN +I  F  AG  E+ +    +M  +G++P+ +T+  L+  
Sbjct: 235 KQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDT 294

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K G +++   +L  +  S ++ D   +N +I  +   GD+    ELF++M  + C PD
Sbjct: 295 LCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPD 354

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMI 458
            I++  +I  Y+     E A  L N+M+
Sbjct: 355 VISYNVLINGYSKTLKVEEAMKLYNEML 382



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 142/303 (46%), Gaps = 3/303 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           KW+ + ++   +  Q   Q    TF  L+  L K  +  +A  L  VM+  G+ P +  Y
Sbjct: 265 KWEESKRLLDEMLDQGL-QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTY 323

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L+  +   G L+ A      M S   C+PDV +Y++LI   +K  + +   K+  EM 
Sbjct: 324 NSLIEGFCMVGDLNSARELFVSMPS-KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
            +G   + +TY++++ G   A K ++ +  FS M ++ G   + +T    +     +  +
Sbjct: 383 LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM-KAHGIAENSYTYGIFLDGLCKNDCL 441

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  K + E      K +I+ LN L     +AG  +    + + +      P VVTY I+
Sbjct: 442 FEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIM 501

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I  F + G ++K     +KM+  G  P+ ITY +L+  + ++  + +V  +L ++   DV
Sbjct: 502 IHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDV 561

Query: 393 ILD 395
             D
Sbjct: 562 SPD 564



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A+K+F  L+    ++   +    L+  L K  + E A  LFE + ++G
Sbjct: 432 LDGLCKNDCLFEAMKLFTELKSSN-FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 490

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P+V  YT ++  + + G +D+A   I  M++ + C PD+ TY+ L++   + ++ + +
Sbjct: 491 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEA-NGCTPDIITYNTLMRGFYESNKLEEV 549

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            ++L  M+   +   A+T + ++D   K +K++E
Sbjct: 550 VQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQE 583


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  GEM-KAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 163/375 (43%), Gaps = 39/375 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  EA S I +MK
Sbjct: 8   YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 67

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + +EM  +       T N +ID YG+    
Sbjct: 68  A-AGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMA 126

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 127 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   + +   + AG I +   
Sbjct: 243 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATY 302

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F  +I    +      + E+F  M+     PD+   A ++ AY 
Sbjct: 303 VFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYG 362

Query: 443 ALGMTEAAQNLENKM 457
            L   + A ++  +M
Sbjct: 363 KLQEFDKANDVYMEM 377



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 142

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ SS        F  M+   E
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 261

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      IV+  +GK    +K  + + +M+  G
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 171/373 (45%), Gaps = 19/373 (5%)

Query: 100 IFGLLRQQQWYQAR--------------CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           I GL R ++  +A+                T+   + +  K  + + A   F+ MLS G+
Sbjct: 528 IIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGI 587

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
            P+  +YT L+  +   G   EA ST   M       PD+  YS +I S +K  +     
Sbjct: 588 VPNNVIYTILIKGHCDVGNTVEALSTFKCMLE-KGLIPDIRAYSAIIHSLSKNGKTKEAM 646

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +  +    G+      YN++I G+ K    E+    +  M+ +G  +P+I   N++I+ 
Sbjct: 647 GVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG-INPNIVVYNTLIND 705

Query: 266 YG--NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           YG   SGN+ +  K ++E    G+  D     IL    G+ G  +K  S+    Q++   
Sbjct: 706 YGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV- 764

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            ++  +N +I++F K G + +  E F  M  + + PN +TY  L+ AY KA ++ + + +
Sbjct: 765 GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 824

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              +E  ++I +T  +  ++ +Y Q G+  KM  LF  M+ R    D I +  M  AY  
Sbjct: 825 FLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCK 884

Query: 444 LGMTEAAQNLENK 456
            G +  A  L NK
Sbjct: 885 EGKSLEALKLLNK 897



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 171/367 (46%), Gaps = 12/367 (3%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143
           A+DEA++ KK          L  ++       T+T L+    K K+ ++A L+FE M S 
Sbjct: 291 AVDEALEVKK----------LMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL P+   YTAL+  + + G ++EA   I D       K +V TY+ +I    K      
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALR-IKDEMITRGLKLNVVTYNAMIGGIAKAGEMAK 399

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +  EM   GIE    TYN +IDGY K+    +      A +++    P  FT + +I
Sbjct: 400 AMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAK-ACELLAEMKARKLTPSPFTYSVLI 458

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S   +S +++K  +  ++    GVK ++     L K+Y +   Y+    ++  M      
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P +  YN +I    +A  +E+ +     M  +G+KPN+ TY + ++ YSK+G I   +  
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            + + +S ++ +   +  +I  +   G+  +    F  M E+  +PD   ++ +I + + 
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638

Query: 444 LGMTEAA 450
            G T+ A
Sbjct: 639 NGKTKEA 645



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 2/314 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           KP++  Y A +    Q+G +DEA   +  +       PD +TY++L+    K  R    +
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALE-VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            I   M   G+  +  TY  +IDG+ K    EE       M+ + G   ++ T N+MI  
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI-TRGLKLNVVTYNAMIGG 390

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
              +G + K    +NE  + G++ D  T N+L   Y ++    K   ++  M+ R   P+
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TY+++I     +  ++K  E   +M   G+KPN   Y +L+ AY +         +L+
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            +  + V+ D   +NC+I    +A  VE+   L + M E+   P+  T+   I  Y+  G
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 446 MTEAAQNLENKMIA 459
             + A+     M++
Sbjct: 571 EIQVAERYFKDMLS 584



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 8/319 (2%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M+   + P V  YT ++ A+ + G + +    +++M+   +CKP+++TY+  I    +  
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK--ECKPNLFTYNAFIGGLCQTG 290

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             D   ++   M   G+     TY  ++DG+ K K+ +E +  F +M  S G +P+ FT 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM-PSSGLNPNRFTY 349

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            ++I  +   GNIE+  +  +E    G+K ++ T N +     +AG   K  S+ + M  
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P   TYN++I+ + K+  + K  E   +MK R + P+  TY  L+S    +  + K
Sbjct: 410 AGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            + +L Q+  + V  +   +  +I AY Q    E   EL   M     +PD   +  +I 
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI- 528

Query: 440 AYNALGMTEAAQNLENKMI 458
               +G+  A +  E KM+
Sbjct: 529 ----IGLCRAKKVEEAKML 543



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 4/324 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L   M +  L PS   Y+ L+S    S  L +A   ++ M   +  KP+V+ Y  L
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR-NGVKPNVFMYGTL 492

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           IK+  +  R+++  ++L  M   G+      YN +I G  +AKK EE +     M E G 
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG- 551

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+  T  + I+ Y  SG I+  E+++ +    G+  +     IL K +   G   +  
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           S    M ++   P +  Y+ +I +  K G  ++    F K    G+ P+   Y SL+S +
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG--QAGDVEKMGELFLTMKERHCVP 429
            K G I K   +  ++ ++ +  +   +N +I+ YG  ++G++ +  +LF  M  +   P
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISP 731

Query: 430 DNITFATMIQAYNALGMTEAAQNL 453
           D   +  +I      G  E A +L
Sbjct: 732 DGYIYCILIDGCGKEGNLEKALSL 755



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 42/330 (12%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG--QSGLLDEAFSTINDMKSVSD 180
           G CK+   E+AS L++ ML +G+ P++ VY  L++ YG  +SG L EAF   ++M S   
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS-KG 728

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             PD Y Y ILI  C K    +    +  E     +  S   +N++ID + K  K  E  
Sbjct: 729 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEAR 787

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  MV+     P+I T   +I AYG +  +E+ E+ +          D++T NI+   
Sbjct: 788 ELFDDMVDKK-LTPNIVTYTILIDAYGKAEMMEEAEQLF---------LDMETRNII--- 834

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
                                  P  +TY  ++ ++ + G+  KM   FK M+ RG+  +
Sbjct: 835 -----------------------PNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACD 871

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           +I Y  + SAY K G  ++   +L +     + L+   F+ +I    +   +  + EL  
Sbjct: 872 AIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLS 931

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAA 450
            M +      + T  T++  +   G  + A
Sbjct: 932 EMGKEELSLSSKTCNTLLLGFYKSGNEDEA 961



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 8/253 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K+   + AL +F     QQ        F  L+    K  +  +A  LF+ M+   
Sbjct: 740 IDGCGKEGNLEKALSLFH--EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKK 797

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDL 203
           L P++  YT L+ AYG++ +++EA     DM++  +  P+  TY+ L+ S  +  +RF +
Sbjct: 798 LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET-RNIIPNTLTYTSLLLSYNQIGNRFKM 856

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           I  +  +M   GI C A+ Y  +   Y K  K  E ++    ++VE      D+F  +++
Sbjct: 857 IS-LFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVF--DAL 913

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I        I  + +  +E     +    +T N L   + ++G  D+   V+  MQ+  +
Sbjct: 914 IFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGW 973

Query: 323 FPTVVTYNIVIET 335
            PT ++    I T
Sbjct: 974 VPTSLSLTDSIST 986



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++ + + Y EF      +++   +I    +   G  ++  SV        FFPT++  N 
Sbjct: 157 LDSLVRCYREFG----GSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++    KA  +    + +  M    + P+  TY +++ A+ K G ++K   +L ++E  +
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME-KE 271

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +   +N  I    Q G V++  E+   M E+   PD  T+  ++  +
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 2/315 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  +    Q +QAS+LF+ ML   +KP V  ++ LV A  + G++ EA S    M
Sbjct: 281 TYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM 340

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             ++  +PD+ TYS LI    K   +     +L EM    I    VT++  +D + K   
Sbjct: 341 IQIA-MEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGM 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E +S  + M+E G   P++ T NS++  Y     +++  K ++     G   D+ + N
Sbjct: 400 VSEAQSIINLMIERG-LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYN 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL K Y ++   D+ + + D M  +   P  +T+  +I    +AG     +E FKKM   
Sbjct: 459 ILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSH 518

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+ ITY +L+S + K G + +  ++   ++ S +  +      ++    +AG +E  
Sbjct: 519 GCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDA 578

Query: 416 GELFLTMKERHCVPD 430
            ELF ++      PD
Sbjct: 579 KELFSSLSIEELQPD 593



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 160/330 (48%), Gaps = 2/330 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K +   +A  LF  M S G+ P+V  Y +L+     SG   +A     +M    + KP
Sbjct: 254 LCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLE-WNMKP 312

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV T+SIL+ +  K         +  +M  + +E   VTY+++I G  K+  ++E  +  
Sbjct: 313 DVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLL 372

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           + M+ S    PD+ T +  +  +   G + + +   N     G++ ++ T N L   Y  
Sbjct: 373 NEML-SRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCL 431

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               D+ R V D M  +   P V++YNI+I+ + K+  I++ ++ F +M H+G+ PNSIT
Sbjct: 432 HSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSIT 491

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           + +L+S   +AG       + +++ +     D   ++ ++S + + G +++   LF  +K
Sbjct: 492 HTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALK 551

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +    P+++    ++      G  E A+ L
Sbjct: 552 KSQLKPNHVICKILLGGMCKAGKLEDAKEL 581



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 155/321 (48%), Gaps = 2/321 (0%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            + ++S G +P+V  +T +V+   + G    A   +  M  + DC+P+V +YSI+I S  
Sbjct: 197 LDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVEL-DCEPEVVSYSIIIDSLC 255

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K    +    +   M  +GI  + VTYN++I G   + ++++    F  M+E     PD+
Sbjct: 256 KNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLE-WNMKPDV 314

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T + ++ A    G + +    + +   + ++ DI T + L     ++ ++ +  ++++ 
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE 374

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M  R   P VVT++I ++ F K G + + +     M  RG++PN +TY SL+  Y     
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + +   +   + N     D   +N +I  Y ++  +++  +LF  M  +   P++IT  T
Sbjct: 435 MDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +I      G   AA+ L  KM
Sbjct: 495 LISGLCQAGRPYAAKELFKKM 515



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 4/313 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P +  +  L++A  +    D   S    M+        VYT +ILI      H   L   
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFG-VSCSVYTLTILINCLCHLHLVGLGFS 160

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYG-KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +L ++  LG + S +T+NT+I+G   + +  E ME     M  S G  P ++T   +++ 
Sbjct: 161 VLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIM--SRGYQPTVYTHTMIVNG 218

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
               G       W  +   +  + ++ + +I+  S  +  + ++   +   M+     PT
Sbjct: 219 LCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPT 278

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VVTYN +I     +G  ++    FK+M    MKP+ +T+  LV A  K G++++  S+  
Sbjct: 279 VVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFG 338

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++    +  D   ++ +I    ++   ++   L   M  R+  PD +TF+  +  +   G
Sbjct: 339 KMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKG 398

Query: 446 MTEAAQNLENKMI 458
           M   AQ++ N MI
Sbjct: 399 MVSEAQSIINLMI 411



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 157/379 (41%), Gaps = 44/379 (11%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM-- 140
           + L   ++ K +   + I+   R+ +++   C  +T L +++          L F V+  
Sbjct: 109 QLLAALVRMKHYDSVVSIY---RKMEFFGVSCSVYT-LTILINCLCHLHLVGLGFSVLGK 164

Query: 141 -LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
               G KPS+  +  L++     G + EA   ++ + S    +P VYT+++++    K  
Sbjct: 165 IFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMS-RGYQPTVYTHTMIVNGLCKIG 223

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +       + +M  L  E   V+Y+ IID   K +   E    F  M  S G  P + T 
Sbjct: 224 KTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHM-RSIGISPTVVTY 282

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS+I    NSG  ++    + E     +K                               
Sbjct: 283 NSLIYGMCNSGQWKQASILFKEMLEWNMK------------------------------- 311

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P VVT++I+++   K G + +    F KM    M+P+ +TY SL+    K+ L  +
Sbjct: 312 ----PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKE 367

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++L ++ + ++  D   F+  +  + + G V +   +   M ER   P+ +T+ +++ 
Sbjct: 368 SSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMD 427

Query: 440 AYNALGMTEAAQNLENKMI 458
            Y      + A+ + + M+
Sbjct: 428 GYCLHSQMDEARKVFDIMV 446



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 133/300 (44%), Gaps = 12/300 (4%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
            D+A +  N M  ++   P +  ++ L+ +  +   +D +  I  +M + G+ CS  T  
Sbjct: 85  FDDALAYFNQMVHMNP-FPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLT 143

Query: 225 TIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
            +I+          +   FS +  +   G  P I T N++I+     G I +  +  +  
Sbjct: 144 ILINCLCH---LHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYI 200

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKA 339
              G +  + T  ++     + G   K  + + +M+K       P VV+Y+I+I++  K 
Sbjct: 201 MSRGYQPTVYTHTMIVNGLCKIG---KTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKN 257

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             + +  + F  M+  G+ P  +TY SL+     +G   +   + +++   ++  D   F
Sbjct: 258 RLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTF 317

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ++ A  + G V +   +F  M +    PD +T++++I       + + +  L N+M++
Sbjct: 318 SILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLS 377


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 160/336 (47%), Gaps = 6/336 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+  +  +A  +F+VM   G+ P+   YTAL+  Y   G  +  F+ + +M+     +
Sbjct: 47  GCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRR-GGVE 105

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P++YTY+ L+    +   F     +  EM   G+  + V+YN +I G  +  K ++    
Sbjct: 106 PNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQL 165

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F AM   G  HP + T N +I  YG +G +     ++N+    G++  + T N L   + 
Sbjct: 166 FEAMRREG-IHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFC 224

Query: 303 RA-GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           RA  +   +R+  D M++R   PT VTY I+I  F K   +++  E   +M+  G++ + 
Sbjct: 225 RARDIAHAIRAFSD-MKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDV 283

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            +Y  L+ A    G +M    + + +++  V  +   ++ +I  YG+ G   K   L + 
Sbjct: 284 QSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIME 343

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M++   +P+  ++   I+     G  + A+ L   M
Sbjct: 344 MRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDM 379



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 130/310 (41%), Gaps = 36/310 (11%)

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            D   DV   + L+  C +        ++   M  LG+  + VTY  +I GY   +   E
Sbjct: 32  GDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGY-FVRGQRE 90

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
           M  +    +  GG  P+++T N ++  +  +G  +     ++E  L GV  ++ + NIL 
Sbjct: 91  MGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILI 150

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               R G       + + M++    P++VT+N++I+ +GKAG +     +F +MK  G++
Sbjct: 151 AGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQ 210

Query: 359 PNSITYCSLVSAYSKAGLIM-----------------------------------KVDSI 383
           P+ +TY  L+  + +A  I                                    +   +
Sbjct: 211 PSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEM 270

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L ++E + + +D   +  ++ A    G +    +LF +M  +   P+N+ +  MI  Y  
Sbjct: 271 LSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGR 330

Query: 444 LGMTEAAQNL 453
            G +  A  L
Sbjct: 331 EGSSYKALRL 340



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 4/268 (1%)

Query: 127 CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           C+  E   A LLF+ M   G+  +V  Y  L++   + G L +A      M+      P 
Sbjct: 119 CRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRR-EGIHPS 177

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           + T+++LI    K  +         +M   G++ S VTYN +I G+ +A+       +FS
Sbjct: 178 MVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFS 237

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M E     P   T   +I A+     +++  +  +E    G++ D+Q+  +L  +    
Sbjct: 238 DMKERR-LAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCME 296

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G     R +   M  +   P  V Y+++I  +G+ G   K      +M+  G+ PN  +Y
Sbjct: 297 GKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASY 356

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDV 392
           C  +      G   + ++++  +E++ +
Sbjct: 357 CLTIRLLCNEGKCQEAEALIGDMEDAGL 384



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++ G C+  +   A+ LFE M  +G+ PS+  +  L+  YG++G +  A    N MK+ 
Sbjct: 148 ILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKA- 206

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +  +P V TY+ LI    +        +  ++M    +  + VTY  +I  + K     E
Sbjct: 207 AGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKEN---E 263

Query: 239 MESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           M+ +F  +  +E  G   D+ +   ++ A    G +    K +   +  GVK +    ++
Sbjct: 264 MDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDM 323

Query: 297 LTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +   YGR G  Y  +R +M+ M+K    P V +Y + I      G  ++ E     M+  
Sbjct: 324 MIYGYGREGSSYKALRLIME-MRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDA 382

Query: 356 GMK 358
           G++
Sbjct: 383 GLQ 385



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 70/170 (41%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+     L     ++G   + R V D M +    P  VTY  +I  +   G  E      
Sbjct: 37  DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALV 96

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M+  G++PN  TY  LV  + + G       +  ++    V+ +   +N +I+   + 
Sbjct: 97  GEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRH 156

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           G ++   +LF  M+     P  +TF  +I  Y   G    A +  N+M A
Sbjct: 157 GKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKA 206



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 87/207 (42%), Gaps = 3/207 (1%)

Query: 238 EMESSFSAMV---ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           E+ S+ + +    +SG    D+    +++     SG++ +  + ++    +GV  +  T 
Sbjct: 17  EVRSALAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTY 76

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y   G  +   +++  M++    P + TYN ++  + + G  +     F +M  
Sbjct: 77  TALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPL 136

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+  N ++Y  L++   + G +     +   +    +      FN +I  YG+AG +  
Sbjct: 137 KGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSN 196

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
               F  MK     P  +T+  +I  +
Sbjct: 197 ALHFFNQMKAAGLQPSVVTYNELIGGF 223


>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 426

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 153/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   F 
Sbjct: 4   ALSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDFS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI    V YN++I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  ++ T N MI  YG     ++ +K +      G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M +RG++P++ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 159/356 (44%), Gaps = 39/356 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+ ++   PD  +YS L+   
Sbjct: 66  IFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMR-MAGIMPDTVSYSTLLTMY 124

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + AEM  +    + +T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGM-RKXGIEPN 183

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 353
           ++  M  R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYE 300

Query: 354 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I+ + +      + E+F  M+     PD+   A ++ AY  L   E A +   +M
Sbjct: 361 MINLFSKYKKYSNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLREFEKANDAYTEM 416



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   F +  S 
Sbjct: 7   PDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISI 66

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS +  SG   PD+   NSMI+ +G +    +     +E  + G+  D  + + L   Y 
Sbjct: 67  FSRLKRSG-ITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYV 125

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
               + +  SV   M++      ++T N++I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVV 185

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             R   PD IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 35/169 (20%)

Query: 320 RFFFPTVVTYNIVIETFGKAG-------HIEKMEE------------------------- 347
           R   P   TY+ +I  FGK G        ++KME+                         
Sbjct: 3   RALSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSK 62

Query: 348 ---YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
               F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + ++ DT  ++ +++
Sbjct: 63  AISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLT 122

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            Y +     +   +F  M+E  C+ + IT   MI  Y  L M + A  L
Sbjct: 123 MYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKL 171


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 116 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 171

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      P+ YTY  +I    K  R D   K+  EM   G ++  AV YN +I GY    
Sbjct: 172 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 231

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +        MVE G     + T N ++ A    G   +  +   E    G+  D+ T 
Sbjct: 232 KLDTALLYRDRMVERG-VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 290

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NIL   + + G   K   + + M +R    TVVTY  +I    K G +++ ++ F +   
Sbjct: 291 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 350

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG++P+ + Y +L++++S +G I +   I+ ++E   +  D   +N ++      G V++
Sbjct: 351 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 410

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +L   M ER   PD +T+ T+I  Y+  G  + A  + N+M+
Sbjct: 411 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 454



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 13/376 (3%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL I   +R++        T+  ++    K  + ++A  +F+ ML+ G +KP  
Sbjct: 158 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 217

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL+  Y   G LD A     D          V TY++L+ +     R     +++ 
Sbjct: 218 VMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE 276

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+     TYN +I+G+ K    ++    F  M   G     + T  ++I A    
Sbjct: 277 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG-VRATVVTYTALIYALSKK 335

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++ +K ++E    G++ D+   N L  S+  +G  D+   +M  M+K+   P  VTY
Sbjct: 336 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 395

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++      G +++  +   +M  RG++P+ +TY +L+S YS  G +     I  ++ N
Sbjct: 396 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 455

Query: 390 SDVILDTPFFNCIISAY---GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
                    +N +I      GQ  D E M +    M E    PD+ T+ ++I+       
Sbjct: 456 KGFNPTLLTYNALIQGLCKNGQGDDAENMVK---EMVENGITPDDSTYISLIEGLT---- 508

Query: 447 TEAAQNLENKMIAMKE 462
           TE  + ++++ +A  +
Sbjct: 509 TEDERAIDDERLAAAD 524


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 138/277 (49%), Gaps = 1/277 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEME 240
           +P+  TY+ +I       R     +++ EM   G I     TY T+I G+ K  + E+  
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M+  G   P     N++I  Y + G ++   ++  +    G+   + T N+L  +
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
                      +V++ MQK  F P V TYNI+I  + K G+ +K  E F++M  +G++  
Sbjct: 264 LFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRAT 323

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           ++TY SL+  +S+ G + + D +        +  D   +N +I+++   GD+E+  E+  
Sbjct: 324 AVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMA 383

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M+++   PD++T+ T+++ +  LG  + A+ L ++M
Sbjct: 384 EMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM 420



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 159/379 (41%), Gaps = 39/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      PD YTY+ LI    K  R +   K+  EM   G +  SAV YN +I GY    
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVG 233

Query: 235 KFEEMESSFSAMVESG----------------------------------GCHPDIFTLN 260
           K +        MV+ G                                  G  PD+FT N
Sbjct: 234 KLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYN 293

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I+ Y   GN +K  + + E +  GV+A   T   L   + R G   +   + +   K+
Sbjct: 294 ILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKK 353

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV YN +I +    G +E+  E   +M+ + + P+ +TY +L+  +   G + + 
Sbjct: 354 GIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEA 413

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +++ ++    +  D   +N +IS Y   GD++    +   M ++   P  +T+  +IQ 
Sbjct: 414 RTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQG 473

Query: 441 YNALGMTEAAQNLENKMIA 459
              +   + A+NL  +M+A
Sbjct: 474 LCKIRQGDDAENLMKEMVA 492



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 143/352 (40%), Gaps = 71/352 (20%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL++   +R++        T+  L+    K  + E A  +F+ ML+ G + PS 
Sbjct: 160 RGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSA 219

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDM----------------------KSVSDC------ 181
            +Y AL+  Y   G LD A     DM                         SD       
Sbjct: 220 VMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEE 279

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV+TY+ILI    K        ++  EMS  G+  +AVTY ++I  + +  +
Sbjct: 280 MQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQ 339

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E +  F+  V+ G   PD+   N++I+++   G++E+  +   E     +  D  T N
Sbjct: 340 VQETDRLFNVAVKKG-IRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYN 398

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRF---------------------------------- 321
            L + +   G  D+ R+++D M KR                                   
Sbjct: 399 TLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDK 458

Query: 322 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
            F PT++TYN +I+   K    +  E   K+M  +G+ P+  TY SL+   +
Sbjct: 459 GFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLT 510


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 37/342 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T ++  L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM 
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                 PDV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + 
Sbjct: 319 E-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAY----------------------GNS----- 269
           +E +  F  MV S  C PD+ + +++I  +                      GN+     
Sbjct: 378 DEAKQMFEFMV-SKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 270 --------GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
                   G+ +  ++ + E    GV  +I T N L     + G  +K   V +++Q+  
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             PT+ TYNI+IE   KAG +E   + F  +  +G+KP+ + Y +++S + + G   + D
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           ++ ++++    + ++  +N +I A  + GD E   EL   M+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 160/344 (46%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           YQ    TF  L+  L    +  +A  L + M++ G +P +  Y  +V+   + G  D AF
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +N M+     +P V  Y+ +I    K    D    +  EM   GI  + VTY+++I  
Sbjct: 242 ILLNKMEQ-GKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                ++ +     S M+E    +PD+FT +++I A+   G + + EK Y+E     +  
Sbjct: 301 LCNYGRWSDASRLLSDMIERK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
            I T + L   +      D+ + + +FM  +  FP VV+Y+ +I+ F KA  +++  E F
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELF 419

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M  RG+  N++TY +L+    +AG       I +++ +  V  +   +N ++    + 
Sbjct: 420 REMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK   +F  ++     P   T+  MI+     G  E   +L
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 164/370 (44%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +  LAL + G +  +  Y+    T + L+      K+  +A  L + M   G +P+ 
Sbjct: 128 RRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNT 186

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L+          EA + I+ M +   C+PD+ TY +++    K    DL   +L 
Sbjct: 187 VTFNTLIHGLFLHNKASEAVALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFILLN 245

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    +E   + Y TIIDG  K K  ++  + F  M E+ G  P++ T +S+IS   N 
Sbjct: 246 KMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNY 304

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +W                             D  R + D ++++   P V T+
Sbjct: 305 G------RWS----------------------------DASRLLSDMIERKIN-PDVFTF 329

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           + +I+ F K G + + E+ + +M  R + P+ +TY SL++ +     + +   +   + +
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                D   ++ +I  + +A  V++  ELF  M +R  V + +T+ T+IQ     G  + 
Sbjct: 390 KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDM 449

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 450 AQEIFKEMVS 459



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     + YTYSI
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-MPHNHYTYSI 121

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +  +  L   +L +M  LG E + VT +++++GY  +K+  E  +    M  + 
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT- 180

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+  T N++I          +     +     G + D+ T  ++     + G  D  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M++    P V+ Y  +I+   K  H++     FK+M+ +G++PN +TY SL+S 
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
               G       +L  +    +  D   F+ +I A+ + G + +  +L+  M +R   P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 431 NITFATMIQAY 441
            +T++++I  +
Sbjct: 361 IVTYSSLINGF 371



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 115/282 (40%), Gaps = 35/282 (12%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +  +A  L++ M+   + PS+  Y++L++ +     LDEA      M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PDV +YS LIK   K  R D   ++  EMS  G+  + VTY T+I G  +A  
Sbjct: 388 VS-KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGD 446

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            +  +  F  MV  G                                     P I+T N 
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MI     +G +E     +   +L GVK D+   N +   + R G  ++  ++   M++  
Sbjct: 507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
             P    YN +I    + G  E   E  K+M+  G   ++ T
Sbjct: 567 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%)

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY+I+I  F +   +        KM   G +PN +T  SL++ Y  +  I +  +++ Q+
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             +    +T  FN +I          +   L   M  + C PD +T+  ++      G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 448 EAAQNLENKM 457
           + A  L NKM
Sbjct: 238 DLAFILLNKM 247


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 4/328 (1%)

Query: 116 TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +T  +++ G CK  +  +A  + E+++  GL P+  +Y  L++ Y Q   L  AF    
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            MKS    +PD  TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG A
Sbjct: 394 QMKS-RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + E+  +  S M +  G   D+ +  S++ A+  +G I +     ++     V  + Q 
Sbjct: 453 GQLEKCFTVLSDM-QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQV 511

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +  +Y  +G  ++   +++ M+      ++VTYN++++   ++  I++ EE    ++
Sbjct: 512 YNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLR 571

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           ++G++P+ ++Y +++SA    G   K   +L+++    +      ++ ++SA   AG V 
Sbjct: 572 NQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVH 631

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAY 441
            M  L+  M  ++  P +  +  M+ AY
Sbjct: 632 DMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 172/392 (43%), Gaps = 70/392 (17%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + ML DG KP++  Y  L+S   ++G +DE    +++M S S   PD +TYSIL    
Sbjct: 251 LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYSILFDGL 309

Query: 196 T-----------------------------------KFHRFDLIEKILAEMSYLGIECSA 220
           T                                   K  +    E++L  + + G+  + 
Sbjct: 310 TRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 369

Query: 221 VTYNTIIDGYGKAKK-------FEEMES--------SFSAMV------------------ 247
           V YNT+I+GY + +        FE+M+S        +++A++                  
Sbjct: 370 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 429

Query: 248 -ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E  G  P + T N++I AYG +G +EK     ++    G+K+D+ +   + K++ + G 
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 489

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             +  +++D M  +   P    YN +I+ + ++G  E+     +KMK+ G+  + +TY  
Sbjct: 490 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNL 549

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    ++  I + + ++  + N  +  D   +N IISA    GD +K  EL   M +  
Sbjct: 550 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             P   T+ T++ A  + G     + L  +M+
Sbjct: 610 IRPTLRTYHTLVSALASAGRVHDMECLYQQML 641



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +PD + ++ ++++C      D+   ++  M  S       A +YN +I G  ++ K  + 
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  MV+ G   P+  T N+MI  +   G++E   +  ++    G K +I T N+L  
Sbjct: 214 LKVFDEMVDMG-VVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLS 272

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              RAG  D+ R +MD M     FP   TY+I+ +   + G    M   F +   +G+  
Sbjct: 273 GLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVML 332

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            + T   L++   K G + K + +L  + ++ ++  T  +N +I+ Y Q  D+     +F
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             MK RH  PD+IT+  +I     L M   A++L  +M
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 430



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 2/280 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K +   +A  L   M   G+ PSV+ +  L+ AYG +G L++ F+ ++DM
Sbjct: 406 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDM 465

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     K DV ++  ++K+  K  +      IL +M Y  +  +A  YN+IID Y ++  
Sbjct: 466 QQ-KGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 524

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M  SG     I T N ++     S  I++ E+        G++ D+ + N
Sbjct: 525 TEQAFLLVEKMKNSG-VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 583

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +    G  DK   ++  M K    PT+ TY+ ++     AG +  ME  +++M H+
Sbjct: 584 TIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK 643

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            ++P+S  Y  +V AY +     KV S+ +++    +  D
Sbjct: 644 NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+   G   Q E+   +   M   G+K  V  + ++V A+ ++G + EA + ++D
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 175 MKSVSDCKPDVYTYSIL----IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           M    D  P+   Y+ +    I+S      F L+EK    M   G+  S VTYN ++ G 
Sbjct: 500 MI-YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEK----MKNSGVSASIVTYNLLLKGL 554

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            ++ + +E E     +  + G  PD+ + N++ISA  N G+ +K  +   E N  G++  
Sbjct: 555 CRSSQIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPT 613

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           ++T + L  +   AG    M  +   M  +   P+   Y I+++ + +  +  K+    K
Sbjct: 614 LRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKK 673

Query: 351 KMKHRGM 357
           +M  +G+
Sbjct: 674 EMSEKGI 680



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P++ + N+++E+    G    +   F  +   G +P++  +  +V A   AG +    +
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 383 ILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ++R++  S+     D   +N +I+   ++G      ++F  M +   VP+ IT+ TMI  
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 441 YNALGMTEAAQNLENKMI 458
           +   G  EA   L ++M+
Sbjct: 239 HVKGGDLEAGFRLRDQML 256


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 153/342 (44%), Gaps = 41/342 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 202
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 250
               I + +   GI    V YN++I+ +GKAK F+E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLL 121

Query: 251 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
                                  C  D+ T N MI  YG     ++ +K +     +G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIE 181

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            ++M + G++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           AG V     L   +K     PDNI   T        G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAXHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 158/362 (43%), Gaps = 39/362 (10%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G+ P    Y ++++ +G++ L  EA S I++MK
Sbjct: 47  YSNLIELSRKLCDYSKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMK 106

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   PD  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 107 T-AGVXPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMA 165

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F +M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 166 KEADKLFWSM-RKIGIEPNVISYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 221

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  M      P  +TY+ +I  +GK G +++    F+K++
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLR 281

Query: 354 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
                                          H   +P++I   +     + AG I +   
Sbjct: 282 SSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAXHILAGAGRIEEATW 341

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + RQ  ++  + D   F+ +I  + +      + E+F  M+     PD+   A ++ AY 
Sbjct: 342 VFRQAIDAGEVKDITVFSRMIDLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYG 401

Query: 443 AL 444
            L
Sbjct: 402 KL 403



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 318 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 347
           ++R   P   TY+ +I  FGK G        ++ ME+                       
Sbjct: 1   RZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 348 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ +++ + V  DT  ++ +
Sbjct: 61  SKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ Y +     +   +F  M+E  C  D  T   MI  Y  L M + A  L
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKL 171


>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 178/401 (44%), Gaps = 34/401 (8%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q  W+ AL+IF  L+++  Y+     +  ++ +LGK ++      L++ M+S G+ P  
Sbjct: 172 EQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVN 231

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+  Y + GL +EA   ++ M      +PD  T  +++++  K   F   E+   
Sbjct: 232 STYGTLIDVYSKGGLTEEALHWLDRMNK-QGMEPDEVTMGVVVQTYKKAGEFKKAEQFFK 290

Query: 210 EMSYLG-------------------------IECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             S LG                         +  S+ TYNT+ID YGKA +  E   +F+
Sbjct: 291 NWS-LGKTLKDEGKTSEPTATSAVESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFA 349

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+   G  P+  T N+MI   GN G +E+      +   +    D +T NIL   + + 
Sbjct: 350 WMLRE-GIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKH 408

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
              D+  S    M++    P +V+Y  ++  F     + + E    +M  RG++ +  T 
Sbjct: 409 NNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQ 468

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L   Y +AG++ K     R+  + +  + +  ++  I AYG+ G + +  + FL  KE
Sbjct: 469 SALTRMYIEAGMLKKSWLWFRRF-HLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKE 527

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
              +   + F  MI+AY      E A  L + M    EN G
Sbjct: 528 SRKL-SVLEFNVMIKAYGISNRYEKACQLIDSM----ENHG 563



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 156/372 (41%), Gaps = 37/372 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++ + G   Q E+A+ L + M      P    Y  L+S + +   +D A S    M
Sbjct: 362 TFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKM 421

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-----SAVT-------- 222
           K  +  +PD+ +Y  L+ + +  H     E +++EM   G+E      SA+T        
Sbjct: 422 KE-ARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGM 480

Query: 223 ---------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                                Y+  ID YG+     E E +F    ES      +   N 
Sbjct: 481 LKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKL--SVLEFNV 538

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           MI AYG S   EK  +  +     GV  D  + N L +    A +  K +  +  MQ+  
Sbjct: 539 MIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQ 598

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
                + Y  VI +F K G +E  E  FK+M    ++P+ + Y  L++A++  G + +  
Sbjct: 599 LVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAV 658

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           + +  + N+ + ++   +N +I  Y + G +E+  E +  ++     PD  +   MI  Y
Sbjct: 659 NYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLY 718

Query: 442 NALGMTEAAQNL 453
           +   M + A+ +
Sbjct: 719 SERSMVKQAEEI 730



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 3/261 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+ +L     P +A      M    L      Y A++S++ + G L+ A     +M
Sbjct: 570 SYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEM 629

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               + +PDV  Y ILI +             +  +   G+  +AV YN++I  Y K   
Sbjct: 630 IGY-NVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGY 688

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE + ++  M+++    PD+++ N MI  Y     +++ E+ +      G  A+  +  
Sbjct: 689 LEEAQEAYK-MLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKG-DANEFSFA 746

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++   Y R G   +   ++  M++      +++YN V+  +   G  +     FK+M   
Sbjct: 747 MMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEA 806

Query: 356 GMKPNSITYCSLVSAYSKAGL 376
            ++P+  T+ SL     K G+
Sbjct: 807 AIQPDDCTFKSLGVVLVKCGI 827


>gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis thaliana]
 gi|7269983|emb|CAB79800.1| puative protein [Arabidopsis thaliana]
          Length = 1075

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 160/328 (48%), Gaps = 11/328 (3%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            T   +  ++G+  + E+   L+  + S G+      ++ +V  Y ++G L+EA S +  M
Sbjct: 734  TMIDIYTVMGEFSEAEK---LYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIM 790

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                D  PDVY +  +++   K    D ++ +   +   GI  +   YN +I+   +A  
Sbjct: 791  DEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALP 850

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQ 292
             +E+  +F  M+  G   P+  T N ++  YG +    K+ K  NE  L+  +    D+ 
Sbjct: 851  LDELSGTFEEMIRYGFT-PNTVTFNVLLDVYGKA----KLFKKVNELFLLAKRHGVVDVI 905

Query: 293  TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
            + N +  +YG+   Y  M S +  MQ   F  ++  YN +++ +GK   +EK     K+M
Sbjct: 906  SYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRM 965

Query: 353  KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            K     P+  TY  +++ Y + G I +V  +L++++ S +  D   +N +I AYG  G V
Sbjct: 966  KKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMV 1025

Query: 413  EKMGELFLTMKERHCVPDNITFATMIQA 440
            E+   L   M+ R+ +PD +T+  ++ A
Sbjct: 1026 EEAVGLVKEMRGRNIIPDKVTYTNLVTA 1053



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 175/411 (42%), Gaps = 58/411 (14%)

Query: 94  WQLALKIFGLLRQQQW---------------YQARCQTFTKLMVMLGKCKQPEQASLLFE 138
           + L L++ G  R+++W               +Q   Q F  ++    K    + AS  F 
Sbjct: 348 YSLILRVLG--RREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFH 405

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTK 197
           +ML  G++P+V     L+  Y ++  ++EA    + M+     C+     YS +I   T+
Sbjct: 406 MMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCES---AYSSMITIYTR 462

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
              +D  E+++  M    +      +  +++ Y +  K E  ES   +M E+ G  P+I 
Sbjct: 463 LRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM-EAAGFSPNII 521

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             N++I+ YG    +E  +  ++    +G++ D  +   + + +GRA  Y++ +     +
Sbjct: 522 AYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQEL 581

Query: 318 QKRFFFP------TVVT----------------------------YNIVIETFGKAGHIE 343
           ++  + P      T++                               I+++ + K G I+
Sbjct: 582 KRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSILGIILQAYEKVGKID 641

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
            +    K   H  ++ N  ++ SLV AY K G++     +LR+ +  D   ++  ++ +I
Sbjct: 642 VVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLI 701

Query: 404 SAYGQAGDVEKMGELF-LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +  ++G +    +++   M+    +  +IT +TMI  Y  +G    A+ L
Sbjct: 702 CSCKESGQLTDAVKIYNHKMESDEEINLHIT-STMIDIYTVMGEFSEAEKL 751



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            YS++++   +   +D  E ++ E+  +   + S   +NT+I    K    +     F  
Sbjct: 347 AYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFHM 406

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M+E G   P++ T+  ++  Y  + N+E+ E  ++     G+  +    +++T  Y R  
Sbjct: 407 MLEFG-VRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMIT-IYTRLR 464

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           +YDK   V+D M++      +  + +++  + + G +E  E     M+  G  PN I Y 
Sbjct: 465 LYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYN 524

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +L++ Y K   +     +  ++ N  +  D   +  +I  +G+A + E+    +  +K  
Sbjct: 525 TLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRC 584

Query: 426 HCVPDNITFATMIQAYNALGMTEAA 450
              P++    T+I      G  + A
Sbjct: 585 GYKPNSFNLFTLINLQAKYGDRDGA 609



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 14/314 (4%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL--IKSCTKFHRFDLIEKILAEMS 212
           L + +  +G +D  +S I   +S+  C        IL  ++SC+  +     + +     
Sbjct: 287 LENLFVNNGEIDVNYSAIKPGQSLEHCN------GILKRLESCSDTNAIKFFDWMRCNGK 340

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
            +G   + V Y+ I+   G+ ++++  E     +             N++I A    GN+
Sbjct: 341 LVG---NFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNV 397

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           +   KW++     GV+ ++ T+ +L   Y +    ++       M+K F       Y+ +
Sbjct: 398 KLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRK-FGIVCESAYSSM 456

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I  + +    +K EE    MK   ++     +  +++AYS+ G +   +SIL  +E +  
Sbjct: 457 ITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGF 516

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             +   +N +I+ YG+   +E    LF  +      PD  ++ +MI+ +      E A++
Sbjct: 517 SPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKH 576

Query: 453 L--ENKMIAMKENS 464
              E K    K NS
Sbjct: 577 YYQELKRCGYKPNS 590


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 168/373 (45%), Gaps = 4/373 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D  +K    Q AL ++ ++  Q   +    TF  LM    K K+ +    LFE M +  
Sbjct: 96  IDAFVKAGYTQKALAVYRVM-GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQN 154

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+V  Y+ L+ A  + G +++A     DMKS   C+P+++TY+ +I    K    D  
Sbjct: 155 CSPNVITYSILIDAVCKCGGVEKALKVFLDMKS-RGCRPNIFTYTSMIDGLGKSGHVDKA 213

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  EM+  G+  + V YN++I G G++ + +     F  M+ S G  PD  T  S++ 
Sbjct: 214 FFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREML-SKGLQPDHVTFTSLVY 272

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
             G +G   +  + + E   +G   D+   N+L  +  ++   D+   +   +++    P
Sbjct: 273 GLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVP 332

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V T+N +++   K+G I         MK  G  P+   Y +L+    K+G + +   +L
Sbjct: 333 DVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLL 392

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++++     D   +N +I    + G +E    LF  +  +    + +T+ T++      
Sbjct: 393 LEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG-FANTVTYNTILNGLCMA 451

Query: 445 GMTEAAQNLENKM 457
           G  + A  L N M
Sbjct: 452 GRVDEAYKLFNGM 464



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 157/345 (45%), Gaps = 6/345 (1%)

Query: 113 RC----QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168
           RC      +  L+    K    ++A  ++ VM   GL+P    +  L++A+ ++  +D  
Sbjct: 84  RCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSV 143

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
           +    +M++  +C P+V TYSILI +  K    +   K+  +M   G   +  TY ++ID
Sbjct: 144 WKLFEEMQN-QNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMID 202

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G GK+   ++    F  M   G     +   NS+I   G SG  +   K + E    G++
Sbjct: 203 GLGKSGHVDKAFFLFEEMTSEGLVATRV-VYNSLIHGLGRSGRADAAAKLFREMLSKGLQ 261

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T   L    G AG   + R +    +       V  YN++I+T  K+  +++  E 
Sbjct: 262 PDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEI 321

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F +++  G+ P+  T+ +L+    K+G I     +L  ++ +    D   +N +I    +
Sbjct: 322 FGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRK 381

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +G VE+ G+L L M+     PD +T+ T+I      G  E A  L
Sbjct: 382 SGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRL 426



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 157/348 (45%), Gaps = 8/348 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +A K F  +R Q+      +  T L+ MLG  ++  +A  +   +          ++  L
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIEL 60

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE---MS 212
              Y  +GLL+++   +  M+    C      Y+ LI +   F +    +K LA    M 
Sbjct: 61  ARGYASAGLLEKSVEALKRMEG-HRCALTASAYNSLIDA---FVKAGYTQKALAVYRVMG 116

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+     T+N +++ + KAK+ + +   F  M ++  C P++ T + +I A    G +
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM-QNQNCSPNVITYSILIDAVCKCGGV 175

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           EK  K + +    G + +I T   +    G++G  DK   + + M       T V YN +
Sbjct: 176 EKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSL 235

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I   G++G  +   + F++M  +G++P+ +T+ SLV     AG   +   I ++  +   
Sbjct: 236 IHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGC 295

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            LD   +N +I    ++  +++  E+F  ++E   VPD  TF  ++  
Sbjct: 296 ALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDG 343



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 1/225 (0%)

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           GY  A   E+   +   M E   C       NS+I A+  +G  +K    Y      G++
Sbjct: 63  GYASAGLLEKSVEALKRM-EGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLR 121

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T N+L  ++ +A   D +  + + MQ +   P V+TY+I+I+   K G +EK  + 
Sbjct: 122 PDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKV 181

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F  MK RG +PN  TY S++    K+G + K   +  ++ +  ++     +N +I   G+
Sbjct: 182 FLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGR 241

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +G  +   +LF  M  +   PD++TF +++      G    A+ +
Sbjct: 242 SGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRI 286



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%)

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L + Y  AG+ +K    +  M+      T   YN +I+ F KAG+ +K    ++ M   G
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           ++P++ T+  L++A+ KA  +  V  +  +++N +   +   ++ +I A  + G VEK  
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           ++FL MK R C P+  T+ +MI      G  + A
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKA 213



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 3/236 (1%)

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           T+++  G A++F E E   + + +S     P IF    +   Y ++G +EK  +      
Sbjct: 24  TLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFI--ELARGYASAGLLEKSVEALKRME 81

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
                      N L  ++ +AG   K  +V   M +    P   T+N+++  F KA  ++
Sbjct: 82  GHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVD 141

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
            + + F++M+++   PN ITY  L+ A  K G + K   +   +++     +   +  +I
Sbjct: 142 SVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMI 201

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              G++G V+K   LF  M     V   + + ++I      G  +AA  L  +M++
Sbjct: 202 DGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLS 257


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 167/395 (42%), Gaps = 60/395 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F + +   GK    E+A  +   M+ +G  P    Y+ ++     +  ++ AF    +M
Sbjct: 459 SFARCLCGFGKF---EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEM 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  +   PDVYTY+ILI   +K          L EM   G E + VTY T+I  Y KAKK
Sbjct: 516 KG-TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKK 574

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF------------- 282
                  F  M+ + GC P++ T  ++I  Y  SGNIEK  + Y                
Sbjct: 575 VSVANELFELMI-AKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYF 633

Query: 283 ---NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
              N +  K ++ T   L     +A      R +++ M      P  + Y+ +I+ F KA
Sbjct: 634 KIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKA 693

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK---AGLIMKVDSILRQVENS---DVI 393
             +++ +E F KM   G  PN  TY SL+    K     L++KV S  + +ENS   +++
Sbjct: 694 AKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLS--KMLENSCAPNIV 751

Query: 394 LDTPF-------------------------------FNCIISAYGQAGDVEKMGELFLTM 422
           + T                                 +  +I  +G+AG V+K  ELF  M
Sbjct: 752 IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREM 811

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             + C P+ +T+  +I    A G  + A  L  +M
Sbjct: 812 GSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 36/360 (10%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG+CK+      +  +M+++G  PS  ++ +LV AY +S     A+  +  M+   +CKP
Sbjct: 359 LGRCKR------ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC-ECKP 411

Query: 184 DVYTYSILIKS-CTKFH-----RFDLIEKILAEMSYLGI---ECSAVTYNTIIDGYGKAK 234
               Y+ILI S C+         F+L EK   EM   G    + + V++   + G+GK  
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK-- 469

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            FE+       M+ +G   PD  T + +I    N+  +E     + E    GV  D+ T 
Sbjct: 470 -FEKAYKVIHEMMGNGFV-PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            IL   + +AG+  +  + +D M +    PTVVTY  +I  + KA  +    E F+ M  
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIA 587

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---------------- 398
           +G  PN ITY +L+  Y K+G I K   I  ++     I D                   
Sbjct: 588 KGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVT 647

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  ++    +A  V+   +L  TM    C P+ I +  +I  +      + AQ + +KM+
Sbjct: 648 YGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV 707



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 161/355 (45%), Gaps = 16/355 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + + A  L E M  DG +P+  VY AL+  + ++  LDEA    + M
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P+VYTYS LI    K  R DL+ K+L++M       + V Y  +IDG  K  K
Sbjct: 707 VE-HGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAK 765

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       M+E  GC P++ T  +MI  +G +G ++K  + + E    G   +  T  
Sbjct: 766 TDE-AYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYT 824

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFK 350
           +L       G  D+  ++++ M++ ++   V +Y  VIE + +      G +E++E+   
Sbjct: 825 VLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK--- 881

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP--FFNCIISAYGQ 408
                G  P  + Y  L+  + KAG +     + ++V ++ + +      +  +I ++  
Sbjct: 882 ----NGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSY 937

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           A  +    ELF  M     +PD  TF  ++     +   E A  L + +  M  N
Sbjct: 938 ASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDIN 992



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 126/323 (39%), Gaps = 51/323 (15%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+  +Y  ++S   ++   +EA   +N M+S S C P+V TY IL+  C    +    ++
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTS-CIPNVQTYRILLCGCLNKKQLGRCKR 364

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           IL+ M   G   S   +N+++  Y K+  F         M E   C P     N +I + 
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM-EKCECKPGYVVYNILIGSI 423

Query: 267 GNSGNI------EKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDF 316
            + G +      E  EK YNE  ++     +  +N++  S+ R     G ++K   V+  
Sbjct: 424 CSGGELPGPVTFELAEKAYNE--MLSAGTVLNKVNVV--SFARCLCGFGKFEKAYKVIHE 479

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M    F P   TY+ VI     A  +E     FK+MK  G+ P+  TY  L         
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL--------- 530

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                                     I  + +AG +++       M    C P  +T+ T
Sbjct: 531 --------------------------IDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 437 MIQAYNALGMTEAAQNLENKMIA 459
           +I AY        A  L   MIA
Sbjct: 565 LIHAYLKAKKVSVANELFELMIA 587



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 42/317 (13%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  K   A ++F  + +   Y     T++ L+  L K K+ +    +   ML + 
Sbjct: 687 IDGFCKAAKLDEAQEVFHKMVEHG-YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENS 745

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P++ +YT ++    +    DEA+  +  M+    CKP+V TY+ +I            
Sbjct: 746 CAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEE-KGCKPNVVTYTAMI------------ 792

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                                  DG+GKA K ++    F  M  S GC P+  T   +I+
Sbjct: 793 -----------------------DGFGKAGKVDKCLELFREM-GSKGCAPNFVTYTVLIN 828

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +G++++      E         + +   + + Y R  +      +++ ++K    P
Sbjct: 829 HCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILS--LGLLEEVEKNGSAP 886

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            ++ Y ++I+ F KAG +E   E  K++      M      Y SL+ ++S A  I     
Sbjct: 887 IILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFE 946

Query: 383 ILRQVENSDVILDTPFF 399
           +   +    VI D   F
Sbjct: 947 LFYDMIRDGVIPDLGTF 963



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           + LN+L +   R G+++     +  ++   + PT +TYN +++ F +A  ++  +   ++
Sbjct: 207 KLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHRE 266

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+  +  T      A  K G   K    L  +E  D + +T  +N +IS   +A  
Sbjct: 267 MSELGLSMDEFTLGFFAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEASF 323

Query: 412 VEKMGELFLTMKERHCVPDNITFATMI 438
            E+  +    M+   C+P+  T+  ++
Sbjct: 324 FEEAMDFLNRMRSTSCIPNVQTYRILL 350



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 45/277 (16%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++LI+ C +   +++  + L  +   G + + +TYN ++  + +A K +  +     M E
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
                                               +G+  D  TL    ++  + G   
Sbjct: 270 ------------------------------------LGLSMDEFTLGFFAQALCKVG--- 290

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           K R  +  ++K  F P  + YN +I    +A   E+  ++  +M+     PN  TY  L+
Sbjct: 291 KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
                   + +   IL  +           FN ++ AY ++ D     +L   M++  C 
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECK 410

Query: 429 PDNITFATMIQAYNALG------MTEAAQNLENKMIA 459
           P  + +  +I +  + G        E A+   N+M++
Sbjct: 411 PGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 67  KVSSKKYKN-LWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM 123
           KV SK  +N   P  V+  E +D   K  K   A K+  L+ +++  +    T+T ++  
Sbjct: 736 KVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLM-LMMEEKGCKPNVVTYTAMIDG 794

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
            GK  + ++   LF  M S G  P+   YT L++    +G LDEA++ + +MK     K 
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPK- 853

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            V +Y  +I+   +   F L   +L E+   G     + Y  +ID + KA + E
Sbjct: 854 HVSSYCKVIEGYKR--EFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLE 905


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 175/377 (46%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+ +L+    +    ++A+ + E+M   G+ P+   YT ++ AYG++G  DEA      M
Sbjct: 353 TYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 412

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  + C P+  TY+ ++    K  R + + K+L +M   G   +  T+NT++   G    
Sbjct: 413 KE-AGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGM 471

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +   F  M +S G  PD  T N++ISAYG  G+     K Y E    G  A + T N
Sbjct: 472 DKFVNRVFREM-KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYN 530

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEEYFKK- 351
            L  +  R G +    +V+  M+ + F PT  +Y+++++ + K G+   IE++E   K+ 
Sbjct: 531 ALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEG 590

Query: 352 -------------------------------MKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
                                           K  G KP+ + + S++S +++  +  + 
Sbjct: 591 QIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQA 650

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + IL  +    +  D   +N ++  Y + G+  K  E+  T+++    PD +++ T+I+ 
Sbjct: 651 EGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKG 710

Query: 441 YNALGMTEAAQNLENKM 457
           +   G+ + A  + ++M
Sbjct: 711 FCRRGLMQEAVRMLSEM 727



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 174/425 (40%), Gaps = 47/425 (11%)

Query: 71  KKYKNLWPKPVLEALDEAIK-----QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           ++ K + P P L   +  +       + W+   KI G+L + +    +   FT    +L 
Sbjct: 234 ERMKEMGPSPTLVTYNVILDVFGKMGRSWR---KILGVLDEMRSKGLKFDEFT-CSTVLS 289

Query: 126 KCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
            C +     +A   F  + S G +P    Y AL+  +G++G+  EA S + +M+  S C 
Sbjct: 290 ACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENS-CP 348

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ L+ +  +         ++  M+  G+  +A+TY T+ID YGKA K +E    
Sbjct: 349 ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKL 408

Query: 243 FSAMVESG----------------------------------GCHPDIFTLNSMISAYGN 268
           F +M E+G                                  GC P+  T N+M++  GN
Sbjct: 409 FYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGN 468

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G  + + + + E    G + D  T N L  +YGR G       +   M +  F   V T
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN ++    + G     E     MK +G KP   +Y  ++  Y+K G  + ++ I  +++
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +         ++ A  +   +      F   K+    PD + F +M+  +    M +
Sbjct: 589 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648

Query: 449 AAQNL 453
            A+ +
Sbjct: 649 QAEGI 653



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 173/390 (44%), Gaps = 14/390 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ ++ +A K+   +  Q+ Y    + +T ++    +  + E+A  LFE M   G  P++
Sbjct: 187 RESQYSVAAKLLDKIPLQE-YLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTL 245

Query: 150 DVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             Y  ++  +G+ G    +    +++M+S    K D +T S ++ +C +       ++  
Sbjct: 246 VTYNVILDVFGKMGRSWRKILGVLDEMRS-KGLKFDEFTCSTVLSACAREGLLREAKEFF 304

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
           AE+   G E   VTYN ++  +GKA  + E  S    M E   C  D  T N +++AY  
Sbjct: 305 AELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEM-EENSCPADSVTYNELVAAYVR 363

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  ++           GV  +  T   +  +YG+AG  D+   +   M++    P   T
Sbjct: 364 AGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCT 423

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN V+   GK     +M +    MK  G  PN  T+ ++++     G+   V+ + R+++
Sbjct: 424 YNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMK 483

Query: 389 NSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           +     D   FN +ISAYG+ G   D  KM           CV    T+  ++ A    G
Sbjct: 484 SCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV---TTYNALLNALARKG 540

Query: 446 MTEAAQN----LENKMIAMKENSGKKLIQC 471
              + +N    +++K     E S   ++QC
Sbjct: 541 DWRSGENVISDMKSKGFKPTETSYSLMLQC 570



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 202/469 (43%), Gaps = 19/469 (4%)

Query: 1   MHLSNSIFTPPTTATHLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFA 60
           +HLS+    PP  +      +  P   +     S  PI  + I+ E    L  + + E  
Sbjct: 56  VHLSSP---PPRHSNSAAARF--PSLEVSTDSSSSKPILGIEIENERNGSLKLLCKKEVV 110

Query: 61  IKN--IEKKVS--SKKYKNLWPKPVLEALDEAIK----QKKWQLALKIFGLL---RQQQW 109
           + N  +E+ ++  S+ + ++  + +   L   +K       W+ A+ +F  L        
Sbjct: 111 LVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGA 170

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
            +   Q     + +LG+  Q   A+ L + +        V  YT ++ AY ++G  ++A 
Sbjct: 171 LKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAI 230

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIID 228
                MK +    P + TY++++    K  R +  I  +L EM   G++    T +T++ 
Sbjct: 231 DLFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLS 289

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
              +     E +  F A ++S G  P   T N+++  +G +G   +      E       
Sbjct: 290 ACAREGLLREAKEFF-AELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCP 348

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
           AD  T N L  +Y RAG   +   V++ M K+   P  +TY  VI+ +GKAG  ++  + 
Sbjct: 349 ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKL 408

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F  MK  G  PN+ TY +++S   K     ++  +L  ++++    +   +N +++  G 
Sbjct: 409 FYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGN 468

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            G  + +  +F  MK     PD  TF T+I AY   G    A  +  +M
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 517



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 170/411 (41%), Gaps = 70/411 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++   GK  + ++A  LF  M   G  P+   Y A++S  G+    +E    + DM
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM 447

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--- 232
           KS + C P+  T++ ++  C        + ++  EM   G E    T+NT+I  YG+   
Sbjct: 448 KS-NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506

Query: 233 ----AKKFEEM-ESSFSAMV--------------------------ESGGCHPDIFTLNS 261
               +K + EM  + F+A V                          +S G  P   + + 
Sbjct: 507 EVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSL 566

Query: 262 MISAYGNSGN---IEKMEK----------W----------------------YNEFNLMG 286
           M+  Y   GN   IE++E           W                      +  F   G
Sbjct: 567 MLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHG 626

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
            K D+   N +   + R  MYD+   +++ +++    P +VTYN +++ + + G   K E
Sbjct: 627 YKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAE 686

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E  K ++   +KP+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y
Sbjct: 687 EILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGY 746

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              G   ++ ++   M +  C P+ +TF  ++  Y   G    A +  +K+
Sbjct: 747 TAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 2/296 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF  L+   G+C     AS ++  M   G    V  Y AL++A  + G      + I+D
Sbjct: 492 DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 551

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    KP   +YS++++   K   +  IE+I   +    I  S +   T++    K +
Sbjct: 552 MKS-KGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCR 610

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                E +F+ + +  G  PD+   NSM+S +  +   ++ E         G+  D+ T 
Sbjct: 611 ALAGSERAFT-LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTY 669

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y R G   K   ++  ++K    P +V+YN VI+ F + G +++      +M  
Sbjct: 670 NSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTE 729

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           RG++P   TY + VS Y+  G+  +++ ++  +  +D   +   F  ++  Y +AG
Sbjct: 730 RGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 163/327 (49%), Gaps = 4/327 (1%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T  +++ G CK  +  +A  + E+++  GL P+  +Y  L++ Y Q   L  AF     
Sbjct: 157 YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 216

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MKS    +PD  TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG A 
Sbjct: 217 MKS-RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 275

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + E+  +  S M +  G   D+ +  S++ A+  +G I +     ++     V  + Q  
Sbjct: 276 QLEKCFTVLSDM-QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 334

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +  +Y  +G  ++   +++ M+      ++VTYN++++   ++  I++ EE    +++
Sbjct: 335 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 394

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G++P+ ++Y +++SA    G   K   +L+++    +      ++ ++SA   AG V  
Sbjct: 395 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHD 454

Query: 415 MGELFLTMKERHCVPDNITFATMIQAY 441
           M  L+  M  ++  P +  +  M+ AY
Sbjct: 455 MECLYQQMLHKNVEPSSSIYGIMVDAY 481



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 172/392 (43%), Gaps = 70/392 (17%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + ML DG KP++  Y  L+S   ++G +DE    +++M S S   PD +TYSIL    
Sbjct: 73  LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYSILFDGL 131

Query: 196 T-----------------------------------KFHRFDLIEKILAEMSYLGIECSA 220
           T                                   K  +    E++L  + + G+  + 
Sbjct: 132 TRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 191

Query: 221 VTYNTIIDGYGKAKK-------FEEMES--------SFSAMV------------------ 247
           V YNT+I+GY + +        FE+M+S        +++A++                  
Sbjct: 192 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 251

Query: 248 -ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E  G  P + T N++I AYG +G +EK     ++    G+K+D+ +   + K++ + G 
Sbjct: 252 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 311

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             +  +++D M  +   P    YN +I+ + ++G  E+     +KMK+ G+  + +TY  
Sbjct: 312 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNL 371

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    ++  I + + ++  + N  +  D   +N IISA    GD +K  EL   M +  
Sbjct: 372 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 431

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             P   T+ T++ A  + G     + L  +M+
Sbjct: 432 IRPTLRTYHTLVSALASAGRVHDMECLYQQML 463



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 2/280 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K +   +A  L   M   G+ PSV+ +  L+ AYG +G L++ F+ ++DM
Sbjct: 228 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDM 287

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     K DV ++  ++K+  K  +      IL +M Y  +  +A  YN+IID Y ++  
Sbjct: 288 QQ-KGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 346

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M  SG     I T N ++     S  I++ E+        G++ D+ + N
Sbjct: 347 TEQAFLLVEKMKNSG-VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 405

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +    G  DK   ++  M K    PT+ TY+ ++     AG +  ME  +++M H+
Sbjct: 406 TIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK 465

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            ++P+S  Y  +V AY +     KV S+ +++    +  D
Sbjct: 466 NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 1/238 (0%)

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
           A +YN +I G  ++ K  +    F  MV+ G   P+  T N+MI  +   G++E   +  
Sbjct: 16  AFSYNVVIAGLWRSGKGSDALKVFDEMVDMG-VVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           ++    G K +I T N+L     RAG  D+ R +MD M     FP   TY+I+ +   + 
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
           G    M   F +   +G+   + T   L++   K G + K + +L  + ++ ++  T  +
Sbjct: 135 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIY 194

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           N +I+ Y Q  D+     +F  MK RH  PD+IT+  +I     L M   A++L  +M
Sbjct: 195 NTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 252



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 149/343 (43%), Gaps = 37/343 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  ++  L +  +   A  +F+ M+  G+ P+   Y  ++  + + G L+  F  + D 
Sbjct: 18  SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFR-LRDQ 76

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KP++ TY++L+    +  R D    ++ EM+   +     TY+ + DG  +  +
Sbjct: 77  MLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGE 136

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              M S F+  ++ G           M+ AY                          T +
Sbjct: 137 SRTMLSLFAESLKKG----------VMLGAY--------------------------TCS 160

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     + G   K   V++ +      PT V YN +I  + +   +      F++MK R
Sbjct: 161 ILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSR 220

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P+ ITY +L++   K  ++ K + ++ ++E S V      FN +I AYG AG +EK 
Sbjct: 221 HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKC 280

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +   M+++    D I+F ++++A+   G    A  + + MI
Sbjct: 281 FTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 323



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 110/262 (41%), Gaps = 41/262 (15%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTAL 155
           K F +L   Q    +    +   V+   CK    PE  ++L +++  D + P+  VY ++
Sbjct: 279 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD-VAPNAQVYNSI 337

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AY +SG  ++AF  +  MK+ S     + TY++L+K   +  + D  E+++  +   G
Sbjct: 338 IDAYIESGDTEQAFLLVEKMKN-SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 396

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +    V+YNTI                                    ISA  N G+ +K 
Sbjct: 397 LRPDVVSYNTI------------------------------------ISACCNKGDTDKA 420

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            +   E N  G++  ++T + L  +   AG    M  +   M  +   P+   Y I+++ 
Sbjct: 421 LELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDA 480

Query: 336 FGKAGHIEKMEEYFKKMKHRGM 357
           + +  +  K+    K+M  +G+
Sbjct: 481 YVRCENDSKVASLKKEMSEKGI 502


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 142/273 (52%), Gaps = 2/273 (0%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  ML DGL P    + +L++A  + G L++A +  ++M  +   + D+YTY+  I +  
Sbjct: 40  FRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGR-DIYTYNTFIDAIC 98

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K    +L  ++L +M   G++ + VTY+T+IDGY K +K+EE       M +S     D 
Sbjct: 99  KCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKM-KSMRIQLDR 157

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
              N++++ Y  +G   ++    +E   +G++ D  T N L   YG+ G  D +  ++  
Sbjct: 158 VCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQD 217

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+KR   P+V+TY+ +I+ + KAG        +   K  G+KP+ + + S +   +K GL
Sbjct: 218 MRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGL 277

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           I    S+L  +    +  +   +N II A+G++
Sbjct: 278 IEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKS 310



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 160/342 (46%), Gaps = 24/342 (7%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+    +    E A  +F+ M+  G+   +  Y   + A  + G ++ A   + D
Sbjct: 53  KTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLD 112

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M++    KP+V TYS LI   +K  +++   K+  +M  + I+   V YNT++  Y KA 
Sbjct: 113 MEA-KGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAG 171

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K+ E+ +    M E  G   D  T NS+I+ YG  G ++ +     +    GV   + T 
Sbjct: 172 KYAEIANVCDEM-EELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTY 230

Query: 295 NILTKSYGRAGMY-DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           + L   Y +AGM+ D     +DF ++    P VV ++  I+T  K G IE        M 
Sbjct: 231 STLIDIYSKAGMHGDAFNVYLDF-KESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMT 289

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDS------ILRQVENSDVILDTPFFNCIISAYG 407
             G+KPN +TY +++ A+ K+ ++M+ DS      I+       V +  P     +S  G
Sbjct: 290 EMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANP-----VSRGG 344

Query: 408 QAGDVEKMG---------ELFLTMKERHCVPDNITFATMIQA 440
           ++    +M          ELF  M ++   P+ +TF+ ++ A
Sbjct: 345 RSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNA 386



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 3/308 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           + E M   GL+P+   Y A++ A G+ G+ L         M     C PD  T++ L+ +
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLC-PDRKTFNSLLAA 61

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           C++    +    +  EM +LGI     TYNT ID   K    E        M E+ G  P
Sbjct: 62  CSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDM-EAKGVKP 120

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           ++ T +++I  Y      E+  K   +   M ++ D    N L   Y +AG Y ++ +V 
Sbjct: 121 NVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVC 180

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           D M++       VTYN +I  +GK G ++ +    + M+ RG+ P+ +TY +L+  YSKA
Sbjct: 181 DEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKA 240

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G+     ++    + S +  D   F+  I    + G +E    L   M E    P+ +T+
Sbjct: 241 GMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTY 300

Query: 435 ATMIQAYN 442
             +I A+ 
Sbjct: 301 NAIIDAFG 308



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 8/251 (3%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +L  M   G+  + V+YN +ID  GK           F  M++ G C PD  T NS+++A
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLC-PDRKTFNSLLAA 61

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
               G++E     ++E   +G+  DI T N    +  + G  +    V+  M+ +   P 
Sbjct: 62  CSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPN 121

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFK---KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
           VVTY+ +I+ + K   +EK EE  K   KMK   ++ + + Y +L++ Y KAG   ++ +
Sbjct: 122 VVTYSTLIDGYSK---LEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIAN 178

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  ++E   +  DT  +N +I+ YG+ G ++ +  L   M++R   P  +T++T+I  Y+
Sbjct: 179 VCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYS 238

Query: 443 ALGMTEAAQNL 453
             GM   A N+
Sbjct: 239 KAGMHGDAFNV 249



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 133/303 (43%), Gaps = 47/303 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+   +  + KC   E A  +   M + G+KP+V  Y+ L+  Y +    +EA      M
Sbjct: 89  TYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKM 148

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           KS+   + D   Y+ L+    K  ++  I  +  EM  LGIE   VTYN++I+GYGK  +
Sbjct: 149 KSMR-IQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGR 207

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            + +      M + G   P + T +++I  Y  +G        Y +F   G+K D+   +
Sbjct: 208 LDIVSILVQDMRKRG-VAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFS 266

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---------------- 339
               +  + G+ +   S+++ M +    P VVTYN +I+ FGK+                
Sbjct: 267 SFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIV 326

Query: 340 ----GHIEKME-------------------------EYFKKMKHRGMKPNSITYCSLVSA 370
               G I ++                          E F+KM  +G++PN +T+ ++++A
Sbjct: 327 GVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNA 386

Query: 371 YSK 373
            S+
Sbjct: 387 CSR 389



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 127/282 (45%), Gaps = 6/282 (2%)

Query: 182 KPDVYTYSILIKSCTKFH---RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +P   +Y+ +I +C K     RF L      +M   G+     T+N+++    +    E+
Sbjct: 13  RPTTVSYNAVIDACGKGGVDLRFTL--GYFRQMLKDGLCPDRKTFNSLLAACSRVGHLED 70

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
             + F  M+  G    DI+T N+ I A    GN+E   +   +    GVK ++ T + L 
Sbjct: 71  ARAVFDEMIHLG-IGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLI 129

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             Y +   Y++   + + M+        V YN ++  + KAG   ++     +M+  G++
Sbjct: 130 DGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIE 189

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            +++TY SL++ Y K G +  V  +++ +    V      ++ +I  Y +AG       +
Sbjct: 190 KDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNV 249

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +L  KE    PD + F++ I      G+ E A +L N M  M
Sbjct: 250 YLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEM 291



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 14/229 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   GK  + +  S+L + M   G+ PSV  Y+ L+  Y ++G+  +AF+   D 
Sbjct: 194 TYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDF 253

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S  KPDV  +S  I +  K    +    +L +M+ +GI+ + VTYN IID +GK+K 
Sbjct: 254 KE-SGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKV 312

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---------G 286
             E +S    M   G     I  + + +S  G S    +M +    F ++         G
Sbjct: 313 MMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQG 372

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVI 333
           V+ ++ T + +  +  R   ++    +++  Q R F  F   V Y +++
Sbjct: 373 VRPNVVTFSAILNACSRCNSFEDAALLLE--QLRLFDNFVYGVAYGLLV 419



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
            V++ M+     PT V+YN VI+  GK G  +     YF++M   G+ P+  T+ SL++A
Sbjct: 2   GVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAA 61

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            S+ G +    ++  ++ +  +  D   +N  I A  + G++E   ++ L M+ +   P+
Sbjct: 62  CSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPN 121

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            +T++T+I  Y+ L   E A  L  KM +M+
Sbjct: 122 VVTYSTLIDGYSKLEKYEEALKLCEKMKSMR 152


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 174/375 (46%), Gaps = 10/375 (2%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPS 148
           +KK Q AL++   +     Y       +   V+ G  K+ E  +A  LF  M+  GL P 
Sbjct: 175 EKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPD 234

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           V  Y +L+    ++  +D+A + +  M  K V    PD  TY+I+I+      + +   +
Sbjct: 235 VVTYNSLIDGLCKAQAMDKAVAILQHMFDKGV---MPDTRTYNIMIRGYCSLGQLEEAVR 291

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L +MS  G++   VTY+ +I  Y K  +  E  S F +MV  G   P+    + ++  Y
Sbjct: 292 LLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQ-KPNSTIYHILLHGY 350

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G +  +    +     G+  + +  NIL  +Y + G  DK  +    M++    P V
Sbjct: 351 ATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDV 410

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+Y+ VI    K G +E    +F +M   G+ PN I++ SL+      G   KV+ +  +
Sbjct: 411 VSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFE 470

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 445
           + N  +  D  F N I+    + G V +  + F  +      PD +++ T+I  Y  +G 
Sbjct: 471 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGK 530

Query: 446 MTEAAQNLENKMIAM 460
           M E+ + L+ +M+++
Sbjct: 531 MDESIKQLD-RMVSI 544



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 4/280 (1%)

Query: 183 PDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEM 239
           PDV++Y+ LIK  C +    + +E ++   +  G  CS   V+YNT+IDG+ K  + ++ 
Sbjct: 160 PDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKA 219

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M+   G  PD+ T NS+I     +  ++K           GV  D +T NI+ +
Sbjct: 220 YFLFHEMM-GQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIR 278

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            Y   G  ++   ++  M      P VVTY+++I+ + K G   +    F  M  +G KP
Sbjct: 279 GYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKP 338

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           NS  Y  L+  Y+  G ++ V  +L  +    +  +   FN +I AY + G V+K    F
Sbjct: 339 NSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAF 398

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             M++    PD ++++T+I      G  E A    N+M++
Sbjct: 399 TEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVS 438



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 164/350 (46%), Gaps = 5/350 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + F  L+    K    ++A   F  M  +GL+P V  Y+ ++    ++G +++A    N 
Sbjct: 376 RAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQ 435

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M S     P++ +++ LI        +  +E++  EM   GI   A+  NTI+D   K  
Sbjct: 436 MVS-EGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEG 494

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E +  F  MV   G  PD+ + N++I  Y   G +++  K  +    +G++ D  T 
Sbjct: 495 RVVEAQDFFD-MVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y + G  +   ++   M ++      +T NI++    +AG I    E + KM  
Sbjct: 554 NSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVD 613

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG +    TY +++    +   + +   +   + + +  LD   F+ +I+A  + G +++
Sbjct: 614 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDE 673

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
              LF  M  R  VPD IT++ MI+++   G+ E + NL    ++M++N 
Sbjct: 674 AKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNL---FLSMEKNG 720



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 47/373 (12%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-- 163
           +Q   +    +++ ++ +L K  + E A   F  M+S+GL P++  +T+L+      G  
Sbjct: 402 RQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEW 461

Query: 164 --LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
             + + AF  IN         PD    + ++ +  K  R    +     + ++G++   V
Sbjct: 462 KKVEELAFEMIN-----RGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVV 516

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           +YNT+IDGY    K +E       MV S G  PD +T NS+++ Y  +G +E     Y E
Sbjct: 517 SYNTLIDGYCFVGKMDESIKQLDRMV-SIGLRPDSWTYNSLLNGYFKNGRVEDALALYRE 575

Query: 282 FNLMGVKADIQTLNILTKSYGRAG-----------MYDK--------------------- 309
                VK    T NI+     +AG           M D+                     
Sbjct: 576 MFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSC 635

Query: 310 ----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
               +R   D   K F    V T++IVI    K G I++ +  F  M  RG  P+ ITY 
Sbjct: 636 VDEALRMFEDLRSKEFEL-DVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYS 694

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            ++ ++ + GL+ + D++   +E +    D+   N I+    + GDV + G     + E+
Sbjct: 695 LMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEK 754

Query: 426 HCVPDNITFATMI 438
           +   +  T A +I
Sbjct: 755 NFSLEASTAALLI 767



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 34/271 (12%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMV 247
            ILI+      R DL     A     G     VT N +I G     + ++ M+  F  M 
Sbjct: 95  GILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMP 154

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E G   PD+F+ N++I        +EK  +   E  L+ + AD              G Y
Sbjct: 155 ELGYT-PDVFSYNALIKGLC----VEKKSQEALEL-LIHMTAD--------------GGY 194

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +               P VV+YN VI+ F K G ++K    F +M  +G+ P+ +TY SL
Sbjct: 195 N-------------CSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSL 241

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +    KA  + K  +IL+ + +  V+ DT  +N +I  Y   G +E+   L   M     
Sbjct: 242 IDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGL 301

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            PD +T++ +IQ Y  +G    A+++ + M+
Sbjct: 302 QPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F  LR ++ ++   +TF+ ++  L K  + ++A  LF  M+  G  P V  Y+ ++
Sbjct: 639 ALRMFEDLRSKE-FELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMI 697

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
            ++ + GLL+E+ +    M+  + C  D +  +I+++
Sbjct: 698 KSHIEEGLLEESDNLFLSMEK-NGCAADSHMLNIIVR 733


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 161/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  +++ M+ DG+ PSV  Y+ L+ A+G+   +D     +N+M
Sbjct: 173 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEM 232

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    KP+VY+Y+I I+   +  RFD    IL +M   G +   VT+  II     A +
Sbjct: 233 EA-RGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGR 291

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + ++ F  M  S    PD  T  +++   G+SG+ + + + +N     G   +I +  
Sbjct: 292 LSDAKAVFWKMKASDQ-KPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYT 350

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  + G  D+  +V D M+++   P   +YN +I  F KA   ++  E F  M   
Sbjct: 351 AVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNAC 410

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN  T+   ++ Y K+G  +K       +++  ++ D    N ++ +   +G +   
Sbjct: 411 GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMA 470

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  +K     PD IT+  MI+  +     + A N  + M+
Sbjct: 471 KRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMV 513



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 163/347 (46%), Gaps = 2/347 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LMV  GK +  +    L   M + G+KP+V  YT  +   GQ+   DEA+  +  
Sbjct: 207 RTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGK 266

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+  S CKPDV T++++I+      R    + +  +M     +   VTY T++D  G + 
Sbjct: 267 MED-SGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSG 325

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             + +   ++AMV + G + +I +  +++ A    G +++    ++E    G+  +  + 
Sbjct: 326 DSQSVVEVWNAMV-ADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSY 384

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   + +A M+D+   + + M      P   T+ + I  +GK+G   K  + ++ MK 
Sbjct: 385 NSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKS 444

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+ P+     +++ + + +G +     +  +++   V  DT  +  +I    +A   ++
Sbjct: 445 KGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADE 504

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
               F  M E  CVPD +   ++I      G    A  L +K+  MK
Sbjct: 505 AMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMK 551



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 154/321 (47%), Gaps = 5/321 (1%)

Query: 121 MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + +L KC     +  + EV   M++DG   ++  YTA+V A  Q G +DEA +  ++MK 
Sbjct: 315 ITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKE 374

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                P+ Y+Y+ LI    K   FD   ++   M+  G   +  T+   I+ YGK+ +  
Sbjct: 375 -KGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSL 433

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +    +  M +S G  PD+   N+++ +   SG +   ++ + E   MGV  D  T  ++
Sbjct: 434 KAIQRYEHM-KSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMM 492

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K   +A   D+  +    M +    P V+  N +I+T  K G   +  + F K+K   +
Sbjct: 493 IKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKI 552

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           +P + TY +L+S   + G + +V  +L ++  +    +   +N ++    + G+V    +
Sbjct: 553 EPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAID 612

Query: 418 LFLTMKERHCVPDNITFATMI 438
           +  +M E+ C PD  ++ T++
Sbjct: 613 MLYSMTEKGCAPDLSSYNTVM 633



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 161/340 (47%), Gaps = 4/340 (1%)

Query: 120  LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
            L+  L K K+  +A  LF      G+      Y +L+       L+D A     +MK + 
Sbjct: 737  LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 796

Query: 180  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE- 238
             C PD +TY++++ +  K  R + + K+  EM   G E + VTYNTII G  K+K+ E+ 
Sbjct: 797  -CGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQA 855

Query: 239  MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            ++  ++ M E  G  P   T   ++     SG +   E  +NE    G + +    NIL 
Sbjct: 856  IDLYYNLMSE--GFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILL 913

Query: 299  KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              +  AG  + +  + + M ++   P + +Y I+I+T   AG +     YF+++   G++
Sbjct: 914  NGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLE 973

Query: 359  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            P+ I Y  L+    K+  I +  S+  +++   +I +   +N +I   G+AG   +  ++
Sbjct: 974  PDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQM 1033

Query: 419  FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +  +  +   P   T+  +I+ Y+  G T+ A     +MI
Sbjct: 1034 YEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMI 1073



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 122/262 (46%), Gaps = 2/262 (0%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
             ++ Y++   T+  ++  L K K+ EQA  L+  ++S+G  P+   Y  L+    +SG +
Sbjct: 828  HRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKM 887

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             +A +  N+M     C+P+   Y+IL+         + + ++  +M   GI     +Y  
Sbjct: 888  VDAENLFNEMLEYG-CEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTI 946

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            +ID    A +  +    F  + E G   PD+   N +I   G S  IE+    +NE    
Sbjct: 947  LIDTLCTAGRLNDGLCYFRQLHELG-LEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKK 1005

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G+  ++ T N L    G+AG   +   + + + ++ + P+V TYN +I  +  +G  +  
Sbjct: 1006 GIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNA 1065

Query: 346  EEYFKKMKHRGMKPNSITYCSL 367
               + +M   G +PNS TY  L
Sbjct: 1066 YAAYGQMIVGGCQPNSSTYMQL 1087



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 116/258 (44%), Gaps = 10/258 (3%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           FDL++K +       ++ +  T+ TI  G G          +   M E+G    + +T N
Sbjct: 124 FDLMQKQV-------VKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAG-MSLNAYTYN 175

Query: 261 SMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            +I     SG + E ME  Y      G+   ++T ++L  ++G+    D +  +++ M+ 
Sbjct: 176 GLIYFLVKSGFDAEAME-VYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEA 234

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R   P V +Y I I   G+A   ++      KM+  G KP+ +T+  ++     AG +  
Sbjct: 235 RGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSD 294

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++  +++ SD   D   +  ++   G +GD + + E++  M       + +++  ++ 
Sbjct: 295 AKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVD 354

Query: 440 AYNALGMTEAAQNLENKM 457
           A   +G  + A  + ++M
Sbjct: 355 ALCQVGRVDEALAVFDEM 372



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/409 (17%), Positives = 159/409 (38%), Gaps = 38/409 (9%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  K   A ++F  L++ +  +    T+  L+  LG+  + ++   L E M    
Sbjct: 528 IDTLYKGGKGNEAWQLFHKLKEMK-IEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTI 586

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P++  Y  ++    ++G ++ A   +  M     C PD+ +Y+ ++    K  R +  
Sbjct: 587 YPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTE-KGCAPDLSSYNTVMYGLIKEERLEEA 645

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++  +M  + +     T  TI+  + K    +E   +    +   GC+ D  + +S++ 
Sbjct: 646 FRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLME 704

Query: 265 AYGNSGNIEK-----------------------------------MEKWYNEFNLMGVKA 289
                  +EK                                     + +N+F  +GV  
Sbjct: 705 GILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSL 764

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
              + N L +      + D    +   M++    P   TYN++++  GK+  +E+M +  
Sbjct: 765 KTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQ 824

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K+M  +G +   +TY +++S   K+  + +   +   + +         +  ++    ++
Sbjct: 825 KEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKS 884

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           G +     LF  M E  C P+   +  ++  +   G TE    L  KM+
Sbjct: 885 GKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMV 933



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 85/205 (41%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           ++ T  ++    G  G +             G+  +  T N L     ++G   +   V 
Sbjct: 135 NVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVY 194

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M +    P+V TY++++  FGK   ++ +     +M+ RG+KPN  +Y   +    +A
Sbjct: 195 KAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQA 254

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
               +   IL ++E+S    D      II     AG +     +F  MK     PD +T+
Sbjct: 255 ARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTY 314

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
            T++      G +++   + N M+A
Sbjct: 315 ITLLDKCGDSGDSQSVVEVWNAMVA 339



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV---MDFMQ 318
           ++ A+G  G++ ++      F+LM  +     +      +G  G+   +RS    +  M+
Sbjct: 110 LMRAHGRVGDMAQV------FDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMR 163

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +        TYN +I    K+G   +  E +K M   G+ P+  TY  L+ A+ K   + 
Sbjct: 164 EAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVD 223

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
            V  +L ++E   V  +   +   I   GQA   ++   +   M++  C PD +T   +I
Sbjct: 224 TVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVII 283

Query: 439 QAYNALGMTEAAQNLENKMIA 459
           Q     G    A+ +  KM A
Sbjct: 284 QVLCDAGRLSDAKAVFWKMKA 304



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L +++GR G    M  V D MQK+     V T+  +    G  G +         M+  G
Sbjct: 110 LMRAHGRVG---DMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAG 166

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           M  N+ TY  L+    K+G   +   + + +    +      ++ ++ A+G+  DV+ + 
Sbjct: 167 MSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVL 226

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467
            L   M+ R   P+  ++   I+        + A ++  KM    E+SG K
Sbjct: 227 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKM----EDSGCK 273


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 192/430 (44%), Gaps = 20/430 (4%)

Query: 16  HLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKN 75
           HL       V R+ A+  SP P++ L   +     L+   R  +A+  +  ++ +  Y +
Sbjct: 68  HLLDISLPVVLRLHAL--SPPPLRPL-FDRTFRSLLTHFSR--YALTPLMLRLFAHMYHH 122

Query: 76  LWPKPV---LEALDEAI-KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--Q 129
             P P      AL  A+ ++   + A +   L+ +  W   R   FT   ++LG C+  Q
Sbjct: 123 GPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGW---RPDAFTFNSLILGYCRTQQ 179

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
            + A  LF+ M   G       Y AL+  + ++G +DEA     +++     +PD+YT++
Sbjct: 180 LDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE-----QPDMYTHA 234

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            L+K      R +    +L +M  LG   +   Y  ++D + + +K EE E   + M ++
Sbjct: 235 ALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDN 294

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
           G   P   T  ++++AY   G +    + +    L G + ++ T N + + +   G   K
Sbjct: 295 GLV-PCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYK 353

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
             +++D M++    P VVTYN++I      GHIE      + M+  G+  +  TY  L+ 
Sbjct: 354 AMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLID 413

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           A  K G + +  S+   +E   +  ++  FN +I+   + G  +        M    C P
Sbjct: 414 ALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAP 473

Query: 430 DNITFATMIQ 439
           D  T++  I+
Sbjct: 474 DTYTYSPFIE 483



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 162/380 (42%), Gaps = 42/380 (11%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++ +  L +   +++  W  A  + +  L+ +  + ++ E+A  +   M  +GL P    
Sbjct: 244 RRGEEGLYMLQKMKELGWRPAT-RAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVT 302

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            TA+V+AY + G +  A      MK +  C+P+V+TY+ +++      +      +L +M
Sbjct: 303 CTAVVNAYCREGRMSGAVRVFESMK-LKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQM 361

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS--AMVESGGCHPDIFTLNSMISAYGNS 269
              G+E   VTYN +I G         +ES+F    ++E  G   D +T N +I A   +
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDG---HIESAFRLLRLMEGNGLAADQYTYNVLIDALCKT 418

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-------KMRSV--------- 313
           G +++    ++     G++ +  T N +     + G +D       KM S          
Sbjct: 419 GKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTY 478

Query: 314 -------------------MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
                              +D M ++   P+ V Y IVI+   K  +       + +M  
Sbjct: 479 SPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVS 538

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G  P+ +TY + V AY   G + + ++++ +++   +I+D   +N +I  +   G  + 
Sbjct: 539 LGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDH 598

Query: 415 MGELFLTMKERHCVPDNITF 434
              +   M     +P++ TF
Sbjct: 599 AVTILKHMTGVASMPNHFTF 618



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 16/339 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++  +  L K K   +     + ML   +KPS   YT ++    +      A      M
Sbjct: 477 TYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQM 536

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S+  C PDV TY+  +++     R    E ++ EM   GI   A+ YNT+IDG+    K
Sbjct: 537 VSLG-CSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGK 595

Query: 236 FEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIE----------KMEKWYNEFN 283
            +   +    M  V S   H   F L   +     + ++           ++   +  F 
Sbjct: 596 TDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFE 655

Query: 284 LM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           LM    V +  +    + + +      D++ S++  M++         Y  ++  F K  
Sbjct: 656 LMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLR 715

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
                      M   G  PN I+Y  L+S ++  G   +   I R +   +   D   + 
Sbjct: 716 MYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWK 775

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            II    + G  +   ++   +++  C P + T+A + +
Sbjct: 776 IIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTE 814



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 55/311 (17%), Positives = 126/311 (40%), Gaps = 33/311 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K++ + LA +I+G +             T +     + +  E  +++ E M   G
Sbjct: 517 IDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVME-MKKGG 575

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL------------- 191
           +      Y  L+  +   G  D A + +  M  V+   P+ +T+ IL             
Sbjct: 576 IIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVAS-MPNHFTFFILLRHLLQRRLAEDV 634

Query: 192 -IKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            +K+ + +   +L +  ++   M    +  SA  Y  I++G+ + ++ +E+ S  S M E
Sbjct: 635 PLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKE 694

Query: 249 SG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSY 301
                + DI+T  S+++ +       K+  + + + L+      G   ++ +   L   +
Sbjct: 695 DDLPLNEDIYT--SLVNCFC------KLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGF 746

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              G  D+ + +   ++ + +    + + I+I+   + GH +   +    ++    KP+ 
Sbjct: 747 TAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSD 806

Query: 362 ITYCSLVSAYS 372
            TY  L    S
Sbjct: 807 ETYAMLTEELS 817


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 166/345 (48%), Gaps = 2/345 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +  ++  L K +   +A  LF  M + G+   V  YT L+  +  +  L EA   +N+
Sbjct: 200 EMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNE 259

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M  +    P+VYTY+IL+ +  K  +    + +LA M    ++   +TY+T++DGY    
Sbjct: 260 M-VLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVY 318

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + ++ +  F+AM    G  PD+ +   +I+ +  +  +++    + E +   +   I T 
Sbjct: 319 ELKKAQHVFNAM-SLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTY 377

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           + L     ++G    +  ++D M+ R     V+TYN +I+   K GH+++    F KMK 
Sbjct: 378 SSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKD 437

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G++P S T+  L+    K G +       + +      LD   +N +I+ + + G +E+
Sbjct: 438 QGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEE 497

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              +   M+E  CVP+ +TF  +I A       + A+ L  +MI 
Sbjct: 498 ALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMIC 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 20/256 (7%)

Query: 120 LMVMLGKCKQPE------------------QASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           L VML  C +P+                  +A  +F  M   G+ P V  YT L++ + +
Sbjct: 292 LAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCK 351

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           + ++DEA +   +M    +  P + TYS LI    K  R   +  ++ EM   GI  + +
Sbjct: 352 NKMVDEALNLFKEMHQ-KNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVI 410

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TYN++IDG  K    +   + F+ M + G   P  FT   ++      G ++  ++ + +
Sbjct: 411 TYNSLIDGLCKNGHLDRAIALFNKMKDQG-IRPCSFTFTILLDGLCKGGRLKDAQEAFQD 469

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G   D+   N++   + + G+ ++  +++  M++    P  VT++I+I    K   
Sbjct: 470 LLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDE 529

Query: 342 IEKMEEYFKKMKHRGM 357
            +K E+  ++M  RG+
Sbjct: 530 NDKAEKLLRQMICRGL 545



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 163/394 (41%), Gaps = 44/394 (11%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P ++ +D+A+ Q    L ++          +      F K++    K K    A  L   
Sbjct: 35  PSIQNVDDAVSQFNRMLCMR----------HTPPIIQFNKILDSFAKIKHYSTAVSLSHR 84

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTK- 197
           +   G++P +     L++ +   G +   FS +  +      +P   T++ LIK  C K 
Sbjct: 85  LELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILK-RGYQPHTITFTTLIKGLCLKG 143

Query: 198 -------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-------GKAKKFEEMESSF 243
                  FH     +K+LA+    GI+   V+Y T+I+G        G  K   +++   
Sbjct: 144 QVNKALHFH-----DKLLAQ----GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRL 194

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           +         P++   N++I A      + +    ++E    G+ AD+ T   L   +  
Sbjct: 195 TK--------PNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCI 246

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           A    +   +++ M  +   P V TYNI+++   K G +++ +     M    +KP+ IT
Sbjct: 247 ASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVIT 306

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L+  Y     + K   +   +    V  D   +  +I+ + +   V++   LF  M 
Sbjct: 307 YSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMH 366

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +++ VP  +T++++I      G      +L ++M
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 90/205 (43%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P I   N ++ ++    +        +   L G++ D+ TLNIL   +   G      SV
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +  + KR + P  +T+  +I+     G + K   +  K+  +G+K + ++Y +L++   K
Sbjct: 117 LAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCK 176

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G       ++R+++      +   +N II A  +   V +   LF  M  +    D +T
Sbjct: 177 IGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVT 236

Query: 434 FATMIQAYNALGMTEAAQNLENKMI 458
           + T+I  +      + A  L N+M+
Sbjct: 237 YTTLIYGFCIASKLKEAIGLLNEMV 261



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/299 (19%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           +D+A S  N M  +    P +  ++ ++ S  K   +     +   +   GI+   +T N
Sbjct: 40  VDDAVSQFNRMLCMRH-TPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+ +    +     S  + +++ G   P   T  ++I      G + K   ++++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGY-QPHTITFTTLIKGLCLKGQVNKALHFHDKLLA 157

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGH 341
            G+K D  +   L     + G     R  +  ++K   R   P V  YN +I+   K   
Sbjct: 158 QGIKFDQVSYGTLINGVCKIG---DTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQL 214

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +    F +M  +G+  + +TY +L+  +  A  + +   +L ++    +  +   +N 
Sbjct: 215 VSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           ++ A  + G V++   +   M +    PD IT++T++  Y  +   + AQ++ N M  M
Sbjct: 275 LVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 75/189 (39%)

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N++     +N    M     I   N +  S+ +   Y    S+   ++ +   P ++T N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I+I  F   G I        K+  RG +P++IT+ +L+      G + K      ++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ 158

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  D   +  +I+   + GD     +L   +  R   P+   + T+I A     +   A
Sbjct: 159 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 218

Query: 451 QNLENKMIA 459
             L ++M A
Sbjct: 219 YGLFSEMTA 227


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 164/342 (47%), Gaps = 8/342 (2%)

Query: 103 LLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+      Q     ++ ++  + K K    A  L+  M+S G+ P+V  Y+AL+S + 
Sbjct: 184 LLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF 243

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
             G L +A    N M  + + KPDVYT++IL+    K  +    + + A M   GI+ + 
Sbjct: 244 TVGQLKDAIDLFNKM-ILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNV 302

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTY +++DGY   K+  + +S    M + G  +PDI + N +I  +     +++    + 
Sbjct: 303 VTYCSLMDGYCLVKEVNKAKSILYTMSQRG-VNPDIQSYNILIDGFCKIKKVDEAMNLFK 361

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E +   +  D+ T N L     + G       ++D M  R   P ++TY+ +++   K  
Sbjct: 362 EMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ--VENSDVILDTPF 398
            ++K      K+K +G++PN  TY  L+    K G +    +I     V+  ++ ++T  
Sbjct: 422 QVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNT-- 479

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +  +I  +   G  ++   L   MK+  C+PD +T+  +I++
Sbjct: 480 YTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRS 521



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 162/355 (45%), Gaps = 14/355 (3%)

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
            Q   Y     TFT L+  L    Q  QA L  + +++ G +     Y  L+    + G 
Sbjct: 118 HQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVG- 176

Query: 165 LDEAFSTINDMKSVSD--CKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAV 221
             E  + ++ ++ V     +P+V  YS +I   C   H  D  + + +EM   GI  + V
Sbjct: 177 --ETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFD-LYSEMVSKGISPNVV 233

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY+ +I G+    + ++    F+ M+      PD++T N ++  +   G   KM++    
Sbjct: 234 TYSALISGFFTVGQLKDAIDLFNKMILEN-IKPDVYTFNILVDGFCKDG---KMKEGKTV 289

Query: 282 FNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           F +M   G+K ++ T   L   Y      +K +S++  M +R   P + +YNI+I+ F K
Sbjct: 290 FAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCK 349

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              +++    FK+M H+ + P+ +TY SL+    K G I     ++ ++ +  V  D   
Sbjct: 350 IKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIIT 409

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++ I+ A  +   V+K   L   +K++   P+  T+  +I      G  E A N+
Sbjct: 410 YSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNI 464



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 134/318 (42%), Gaps = 45/318 (14%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR--- 200
           G  P+   +T L+      G + +A    +D       + D   Y  LI    K      
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQAL-LFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRA 180

Query: 201 -FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             DL+ ++   +    ++ + V Y+TIIDG  K K   +    +S MV S G  P++ T 
Sbjct: 181 ALDLLRRVDGNL----VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMV-SKGISPNVVTY 235

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           +++IS +   G ++     +N+  L  +K                               
Sbjct: 236 SALISGFFTVGQLKDAIDLFNKMILENIK------------------------------- 264

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P V T+NI+++ F K G +++ +  F  M  +G+KPN +TYCSL+  Y     + K
Sbjct: 265 ----PDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNK 320

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             SIL  +    V  D   +N +I  + +   V++   LF  M  +H +PD +T+ ++I 
Sbjct: 321 AKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLID 380

Query: 440 AYNALGMTEAAQNLENKM 457
               LG    A  L ++M
Sbjct: 381 GLCKLGKISYALKLVDEM 398



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLS 142
           LD   K  +   A+ +   L+ Q     R   +T  +++ G CK  + E A  +FE +L 
Sbjct: 414 LDALCKNHQVDKAIALLTKLKDQGI---RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLV 470

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            G   +V+ YT ++  +   GL DEA + ++ MK  S C PD  TY I+I+S       D
Sbjct: 471 KGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNS-CIPDAVTYEIIIRSLFDKDEND 529

Query: 203 LIEKILAEMSYLGI 216
             EK L EM   G+
Sbjct: 530 KAEK-LREMITRGL 542


>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 8/321 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  L   M + G   S+  YT ++ A G  G   EA +   +M  +   K D+  Y++
Sbjct: 59  DKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLG-LKLDLRVYNV 117

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +++SC +    +L +K+LAEM  LGI  +  TY  ++D YG+A +  ++ +    M   G
Sbjct: 118 MLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDG 177

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD F  + +I  Y ++G  +K  +   E   MGV  D +  N +  ++G+ G   + 
Sbjct: 178 -FGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEA 236

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V + MQ+    P ++T+N +I+   KAG + K  E F KM+  G+ P+   + +++S 
Sbjct: 237 LEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISR 296

Query: 371 YSKAGLIMKVDSILRQVENSDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
             + G   K D I R  EN            +  ++  YGQ G  +   E    +K    
Sbjct: 297 LGEQG---KWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGI 353

Query: 428 VPDNITFATMIQAYNALGMTE 448
            P    F  +  AY   G+ E
Sbjct: 354 QPSASMFCVLANAYAQQGLCE 374



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 154/323 (47%), Gaps = 16/323 (4%)

Query: 122 VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           VML  C +    E A  +   M + G+  +   Y ALV  YG++G L++ ++ I +M S 
Sbjct: 117 VMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM-SR 175

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               PD + YS +I        +    +I+ E+  +G+      YN+IID +GK  +  E
Sbjct: 176 DGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSE 235

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               F  M E G   PDI T NS+I  +  +G++ K  + +++    G+  D +    + 
Sbjct: 236 ALEVFEKMQEEG-VKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII 294

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
              G  G +D ++   + M+ R    +   Y I+++ +G+ G  +  EE    +K  G++
Sbjct: 295 SRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQ 354

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMG- 416
           P++  +C L +AY++ GL  +   +L+ +E   +  +    N +I+A+G AG  +E +  
Sbjct: 355 PSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSV 414

Query: 417 ---------ELFLTMKERHCVPD 430
                    E++  M+   C PD
Sbjct: 415 YHHIKDTVPEIYEEMESAGCTPD 437



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 2/280 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y+  I+   +    D   K+LA+M  LG   S  +Y T+I+  G   +  E E+ F  M
Sbjct: 44  VYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREM 103

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           V  G    D+   N M+ +    G +E  +K   E + +G+  +  T   L   YGRAG 
Sbjct: 104 VHLG-LKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGR 162

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            + + +V+  M +  F P    Y+ VI  +   G  +K  E  ++++  G+  +   Y S
Sbjct: 163 LNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNS 222

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++  + K G + +   +  +++   V  D   +N +I  + +AGDV K  ELF  M+E  
Sbjct: 223 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEG 282

Query: 427 CVPDNITFATMIQAYNALGMTEA-AQNLENKMIAMKENSG 465
             PD   F T+I      G  +   +N EN      + SG
Sbjct: 283 LYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSG 322



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G E S V YN  I    +    ++     + M E+ G    + +  ++I A G+ G   +
Sbjct: 37  GEELSGVVYNARIRESCRVGDVDKAMKLLAQM-EALGFSLSLGSYTTVIEALGSVGRTLE 95

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            E  + E   +G+K D++  N++ +S  R G+ +    V+  M          TY  +++
Sbjct: 96  AEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVD 155

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +G+AG +  +     +M   G  P+S  Y  ++  Y   G+  K   I+R++    V L
Sbjct: 156 YYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSL 215

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   +N II  +G+ G++ +  E+F  M+E    PD +T+ ++IQ +   G    A  L 
Sbjct: 216 DKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELF 275

Query: 455 NKM 457
           +KM
Sbjct: 276 SKM 278



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%)

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G  DK   ++  M+   F  ++ +Y  VIE  G  G   + E  F++M H G+K +  
Sbjct: 54  RVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLR 113

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y  ++ +  + GL+   D +L +++   +  +   +  ++  YG+AG +  +  +   M
Sbjct: 114 VYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM 173

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 468
                 PD+  ++ +I  Y   GM + A  +  ++  M  +  K++
Sbjct: 174 SRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRI 219



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL++F  + Q++  +    T+  L+    K     +A  LF  M  +GL P   ++  ++
Sbjct: 236 ALEVFEKM-QEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII 294

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S  G+ G  D       +MK     +     Y+IL+    ++ RF   E+ ++ +   GI
Sbjct: 295 SRLGEQGKWDVIKRNFENMKCRGHQRSGA-IYAILVDIYGQYGRFQGPEECISALKSEGI 353

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           + SA  +  + + Y +    E+       M E+ G  P++  LN +I+A+G +G
Sbjct: 354 QPSASMFCVLANAYAQQGLCEQTVKVLQLM-ETEGIEPNLIMLNMLINAFGIAG 406


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 169/369 (45%), Gaps = 34/369 (9%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           LRQ   Y AR  +  K+   L  C+  E+                 DV + ++   G   
Sbjct: 101 LRQHS-YDARYASLVKIAESLDSCEATEE-----------------DV-SQVLRCLGDKI 141

Query: 164 LLDEAFSTINDMKSVSDC-----------KP--DVYTYSILIKSCTKFHRFDLIEKILAE 210
           L  +A   +N+M +               KP  +V  Y++ +K   K    D  EK+  E
Sbjct: 142 LEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDE 201

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G++   +T++TII     +    +    F  M E G CHPD  T ++MI AYG +G
Sbjct: 202 MLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFG-CHPDDVTYSAMIDAYGRAG 260

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N++   K Y+       + D  T + L + YG +G +D   +V + M+     P +V YN
Sbjct: 261 NVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYN 320

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +++  G+A    + +  +K+M + G++P+  TY +L+ AY +A        + ++++  
Sbjct: 321 TLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEK 380

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEA 449
            + L    +N +++     G  E+   +F  MK   +C+PD+ TF+++I  Y+  G    
Sbjct: 381 GLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSE 440

Query: 450 AQNLENKMI 458
           A+ + N M+
Sbjct: 441 AEAMLNAML 449



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 167/375 (44%), Gaps = 8/375 (2%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           + AL  FG  R++         +   + +  KC+  ++A  LF+ ML  G+KP    ++ 
Sbjct: 157 ETALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFST 216

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++S    S L ++A      M     C PD  TYS +I +  +    D+  K+       
Sbjct: 217 IISCARVSSLPNKAVEWFEKMPEFG-CHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTE 275

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
                 VT++T+I  YG +  F+   + +  M ++ G  P++   N+++ A G +    +
Sbjct: 276 KWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEM-KALGVKPNLVIYNTLLDAMGRAKRPWQ 334

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            +  Y E    G++    T   L ++YGRA   +    V   M+++    +VV YN ++ 
Sbjct: 335 AKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLA 394

Query: 335 TFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
                G+ E+    F+ MK  G   P+S T+ SL++ YS +G + + +++L  +  +   
Sbjct: 395 MCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFE 454

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +      +I  YG+A   +++   F  + E    PD+     M+       MT++ +  
Sbjct: 455 PNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNV-----MTQSPKEE 509

Query: 454 ENKMIAMKENSGKKL 468
             K+I   + +  KL
Sbjct: 510 LGKLIDCIDKANPKL 524


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 157/335 (46%), Gaps = 16/335 (4%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K  Q E A+ + + M S G  P V  Y  ++ ++   G LD A     ++    +C+P V
Sbjct: 150 KANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLK-DNCEPTV 208

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA----KKFEEMES 241
            TY+ILI++       D+  K+L EM   G+E   +TYN II G  K     K FE + S
Sbjct: 209 ITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRS 268

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
                + S GC PDI T N ++    + G   + EK  +E   +G K ++ T +IL  + 
Sbjct: 269 -----LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTL 323

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R G  ++  +++  M+++   P    Y+ +I  F + G ++   E+ + M   G  P+ 
Sbjct: 324 CRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDI 383

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGEL 418
           + Y ++++   + G   K D  L   E  D +   P    +N + SA   +GD  +  E+
Sbjct: 384 VNYNTIMAGLCRTG---KADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEM 440

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            L +  +   PD IT+ ++I      GM + A  L
Sbjct: 441 ILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIEL 475



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 177/385 (45%), Gaps = 14/385 (3%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           + K  LAL+IF     ++  +  C+    T+T L+         + A  L + MLS GL+
Sbjct: 186 RGKLDLALEIF-----EELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLE 240

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P    Y A++    +  ++D+AF  +  + S   CKPD+ TY+IL+++     ++   EK
Sbjct: 241 PDTLTYNAIIRGMCKEMMVDKAFELLRSLSS-RGCKPDIITYNILLRTLLSRGKWSEGEK 299

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +++EM  +G + + VT++ +I    +  K EE  +   +M E G   PD +  + +I+ +
Sbjct: 300 LISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKG-LKPDAYCYDPLIAGF 358

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G ++   ++       G   DI   N +     R G  D+   V + + +    P V
Sbjct: 359 CREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNV 418

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            +YN +      +G   +  E   K+ ++G+ P+ ITY SL+S   + G++ +   +L  
Sbjct: 419 SSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVD 478

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++     +   +N I+    +        E+   M E+ C P+  T+  +I+     G+
Sbjct: 479 MQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGL 538

Query: 447 TEAAQNLENK---MIAMKENSGKKL 468
              A  L N    M A+ E+S  +L
Sbjct: 539 RAEAMELANSLHGMNAISEDSFNRL 563



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 5/318 (1%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            E M+  G  P V + T L+  +  S  + +A   +  ++     KPDV+ Y+ LI    
Sbjct: 92  LECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG--KPDVFAYNALISGFI 149

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K ++ +   ++L  M   G     VTYN +I  +    K +     F  +++   C P +
Sbjct: 150 KANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN-CEPTV 208

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T   +I A    G I+   K  +E    G++ D  T N + +   +  M DK   ++  
Sbjct: 209 ITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRS 268

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           +  R   P ++TYNI++ T    G   + E+   +M   G KPN +T+  L+    + G 
Sbjct: 269 LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGK 328

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + +  ++LR ++   +  D   ++ +I+ + + G ++   E    M    C+PD + + T
Sbjct: 329 VEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNT 388

Query: 437 MIQAYNALGMTEAAQNLE 454
           ++      G  +A Q LE
Sbjct: 389 IMAGLCRTG--KADQALE 404



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 2/229 (0%)

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +A K+ E       MV+ G   PD+     +I  + NS NI K  +        G K D+
Sbjct: 81  RAGKYNESLYFLECMVDKGY-TPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDV 138

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
              N L   + +A   +    V+D M+ R F P VVTYNI+I +F   G ++   E F++
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEE 198

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           +     +P  ITY  L+ A    G I     +L ++ +  +  DT  +N II    +   
Sbjct: 199 LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMM 258

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           V+K  EL  ++  R C PD IT+  +++   + G     + L ++MI++
Sbjct: 259 VDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISI 307



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 3/218 (1%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD+F  N++IS +  +  +E   +  +     G   D+ T NI+  S+   G  D    +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            + + K    PTV+TY I+IE     G I+   +   +M  +G++P+++TY +++    K
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
             ++ K   +LR + +     D   +N ++      G   +  +L   M    C P+ +T
Sbjct: 256 EMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT 315

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
            + +I      G  E A NL   + +MKE   K    C
Sbjct: 316 HSILIGTLCRDGKVEEAVNL---LRSMKEKGLKPDAYC 350


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 173/381 (45%), Gaps = 15/381 (3%)

Query: 83  EALDEAIKQKKWQLALKIFGLL-RQQQWYQARCQT-FTKLMVMLGKCKQPEQASLLFEVM 140
           E L    K+     A K+  ++ R  Q   + C T   + +V +G+    E+AS + + M
Sbjct: 27  EILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRI---ERASRVLKTM 83

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
           +  GL P V  Y  +V  + +   L  A   + DM S+S C PDV TY+ +I+S     +
Sbjct: 84  VMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDM-SLSGCPPDVITYNTIIRSLFDNGK 142

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIID----GYGKAKKFEEMESSFSAMVESGGCHPDI 256
           FD   +        G     + Y  +I+      G  +  E +E      +   GC+PD+
Sbjct: 143 FDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLED-----MAIEGCYPDL 197

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T NS+++     G  E            G++ +  T N L  S    G++D++  ++  
Sbjct: 198 VTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAI 257

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+K    PTVVTYNI+I    K G +E+   +F +M      P+ ITY +L++A  K G+
Sbjct: 258 MKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGM 317

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + +   +   + +S+       +N +I    + G +++  +L+  M E+   PD IT  +
Sbjct: 318 VDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRS 377

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           ++  +  +   E A  +  +M
Sbjct: 378 LVWGFCWIDQVEDAVEILREM 398



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 2/331 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA   +   L  G  P +  YT L+    +      A   + DM ++  C PD+ TY+ 
Sbjct: 144 DQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDM-AIEGCYPDLVTYNS 202

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+   +K  +++    I+  +   G+E +A+TYN+++        ++E++   + M ++ 
Sbjct: 203 LVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTS 262

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P + T N +I+     G +E+   ++ +        DI T N L  +  + GM D+ 
Sbjct: 263 H-PPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEA 321

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V   +      P ++TYN VI+   + G++++  + + +M  +G+ P+ IT+ SLV  
Sbjct: 322 LQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWG 381

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +     +     ILR++   D  +++  +  +I+   +   V+   ++   M      PD
Sbjct: 382 FCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPD 441

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
              ++T+I++    GM E A  L  K+I  K
Sbjct: 442 EEIYSTLIKSVADAGMVEEADELHQKLIERK 472



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 146/328 (44%), Gaps = 4/328 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L ++M      P+    T L+    + G ++ A   +  M  +S   PDV TY+++
Sbjct: 40  EATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTM-VMSGLVPDVITYNMM 98

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +    K  +      +L +MS  G     +TYNTII       KF++    +   +  G 
Sbjct: 99  VGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRG- 157

Query: 252 CHPDIFTLNSMIS-AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           C P +     +I   + + G +  +E    +  + G   D+ T N L     + G Y+  
Sbjct: 158 CLPYLIPYTILIELVWKHCGTVRALEV-LEDMAIEGCYPDLVTYNSLVNFASKEGKYEDA 216

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  +      P  +TYN ++ +    G  ++++E    MK     P  +TY  L++ 
Sbjct: 217 ALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILING 276

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K GL+ +  +   Q+ + +   D   +N +++A  + G V++  ++F+ + + +C P 
Sbjct: 277 LCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPG 336

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMI 458
            IT+ T+I      G  + A  L N+MI
Sbjct: 337 LITYNTVIDGLTRRGYMDEALKLYNQMI 364



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 5/285 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  + E A+L+   +LS G++P+   Y +L+ +    GL DE    +  M
Sbjct: 199 TYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIM 258

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  S   P V TY+ILI    K    +       +M         +TYNT++    K   
Sbjct: 259 KKTSH-PPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGM 317

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    F  + +S  C P + T N++I      G +++  K YN+    G+  D  T  
Sbjct: 318 VDEALQVFVLLSDSN-CSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHR 376

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +      +    ++  M KR        Y +VI    +   ++   +  + M   
Sbjct: 377 SLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISG 436

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV---ILDTP 397
             KP+   Y +L+ + + AG++ + D + +++    V   ILD P
Sbjct: 437 RYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVLRTILDKP 481



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 1/173 (0%)

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V+ D +T N +  +  + G   +   ++D M +    P       +I    + G IE+  
Sbjct: 18  VENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERAS 77

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              K M   G+ P+ ITY  +V  + K   +     +L  +  S    D   +N II + 
Sbjct: 78  RVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSL 137

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQ-AYNALGMTEAAQNLENKMI 458
              G  ++  E +     R C+P  I +  +I+  +   G   A + LE+  I
Sbjct: 138 FDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAI 190


>gi|18417671|ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635625|sp|O65567.2|PP342_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30825, chloroplastic; Flags: Precursor
 gi|332660415|gb|AEE85815.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 160/328 (48%), Gaps = 11/328 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +  ++G+  + E+   L+  + S G+      ++ +V  Y ++G L+EA S +  M
Sbjct: 563 TMIDIYTVMGEFSEAEK---LYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIM 619

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               D  PDVY +  +++   K    D ++ +   +   GI  +   YN +I+   +A  
Sbjct: 620 DEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALP 679

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQ 292
            +E+  +F  M+  G   P+  T N ++  YG +    K+ K  NE  L+  +    D+ 
Sbjct: 680 LDELSGTFEEMIRYGFT-PNTVTFNVLLDVYGKA----KLFKKVNELFLLAKRHGVVDVI 734

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           + N +  +YG+   Y  M S +  MQ   F  ++  YN +++ +GK   +EK     K+M
Sbjct: 735 SYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRM 794

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K     P+  TY  +++ Y + G I +V  +L++++ S +  D   +N +I AYG  G V
Sbjct: 795 KKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMV 854

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQA 440
           E+   L   M+ R+ +PD +T+  ++ A
Sbjct: 855 EEAVGLVKEMRGRNIIPDKVTYTNLVTA 882



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 175/411 (42%), Gaps = 58/411 (14%)

Query: 94  WQLALKIFGLLRQQQW---------------YQARCQTFTKLMVMLGKCKQPEQASLLFE 138
           + L L++ G  R+++W               +Q   Q F  ++    K    + AS  F 
Sbjct: 177 YSLILRVLG--RREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFH 234

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTK 197
           +ML  G++P+V     L+  Y ++  ++EA    + M+     C+     YS +I   T+
Sbjct: 235 MMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCES---AYSSMITIYTR 291

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
              +D  E+++  M    +      +  +++ Y +  K E  ES   +M E+ G  P+I 
Sbjct: 292 LRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM-EAAGFSPNII 350

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
             N++I+ YG    +E  +  ++    +G++ D  +   + + +GRA  Y++ +     +
Sbjct: 351 AYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQEL 410

Query: 318 QKRFFFP------TVVT----------------------------YNIVIETFGKAGHIE 343
           ++  + P      T++                               I+++ + K G I+
Sbjct: 411 KRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSILGIILQAYEKVGKID 470

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
            +    K   H  ++ N  ++ SLV AY K G++     +LR+ +  D   ++  ++ +I
Sbjct: 471 VVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLI 530

Query: 404 SAYGQAGDVEKMGELF-LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +  ++G +    +++   M+    +  +IT +TMI  Y  +G    A+ L
Sbjct: 531 CSCKESGQLTDAVKIYNHKMESDEEINLHIT-STMIDIYTVMGEFSEAEKL 580



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            YS++++   +   +D  E ++ E+  +   + S   +NT+I    K    +     F  
Sbjct: 176 AYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFHM 235

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M+E G   P++ T+  ++  Y  + N+E+ E  ++     G+  +    +++T  Y R  
Sbjct: 236 MLEFG-VRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMIT-IYTRLR 293

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           +YDK   V+D M++      +  + +++  + + G +E  E     M+  G  PN I Y 
Sbjct: 294 LYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYN 353

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +L++ Y K   +     +  ++ N  +  D   +  +I  +G+A + E+    +  +K  
Sbjct: 354 TLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRC 413

Query: 426 HCVPDNITFATMIQAYNALGMTEAA 450
              P++    T+I      G  + A
Sbjct: 414 GYKPNSFNLFTLINLQAKYGDRDGA 438



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 14/314 (4%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL--IKSCTKFHRFDLIEKILAEMS 212
           L + +  +G +D  +S I   +S+  C        IL  ++SC+  +     + +     
Sbjct: 116 LENLFVNNGEIDVNYSAIKPGQSLEHCN------GILKRLESCSDTNAIKFFDWMRCNGK 169

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
            +G   + V Y+ I+   G+ ++++  E     +             N++I A    GN+
Sbjct: 170 LVG---NFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNV 226

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           +   KW++     GV+ ++ T+ +L   Y +    ++       M+K F       Y+ +
Sbjct: 227 KLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRK-FGIVCESAYSSM 285

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I  + +    +K EE    MK   ++     +  +++AYS+ G +   +SIL  +E +  
Sbjct: 286 ITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGF 345

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             +   +N +I+ YG+   +E    LF  +      PD  ++ +MI+ +      E A++
Sbjct: 346 SPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKH 405

Query: 453 L--ENKMIAMKENS 464
              E K    K NS
Sbjct: 406 YYQELKRCGYKPNS 419


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 162/388 (41%), Gaps = 15/388 (3%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ-------------TFTKLMVMLGKCKQ 129
           + +++ +    ++  L I GLLR +QW  A                T+  L+  L K  +
Sbjct: 354 QMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHHK 413

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
             +A  L++ M   G+KPS+    +L+  Y + G +DEA    ++M       P+  TY+
Sbjct: 414 VHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPG-KGFPPNEVTYT 472

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            L+K   K   FD    +L EM   G+ C   TYN +I+G     +  E++      V S
Sbjct: 473 TLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFV-S 531

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  P   T NS+I+ +  +G +      Y +    G+  +I T       Y R    D 
Sbjct: 532 EGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDL 591

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              ++ +M+     P +  YN  I  F K G++     +   +   G+ PN   Y S V+
Sbjct: 592 AVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVT 651

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            Y    ++ +       +    +  DT  +  +I  + + G+V    EL+  M   H +P
Sbjct: 652 GYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYSEMLANHNIP 711

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D+ TF  +       G  + A+ L + M
Sbjct: 712 DDKTFTALTHGLCRSGDIDGAKRLLDDM 739



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 149/383 (38%), Gaps = 44/383 (11%)

Query: 115 QTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             F    +M G C   E  +A  LF+  + DG+ P+   YT L+      G+ DE +   
Sbjct: 293 DVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLC 352

Query: 173 NDMKS---------------------------------VSDCKPDVYTYSILIKSCTKFH 199
             M                                   V    PDV+TY  LI   +K H
Sbjct: 353 RQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHH 412

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +      +  +M   G++ S VT ++++ GY +    +E    +S M    G  P+  T 
Sbjct: 413 KVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEM-PGKGFPPNEVTY 471

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
            +++  Y      +K     NE +  GV     T NIL        M D++  V D M K
Sbjct: 472 TTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLC---MVDRVCEV-DEMLK 527

Query: 320 RF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
           RF    F PT +TYN +I  F KAG +      +++M  +G+ PN +TY S +  Y +  
Sbjct: 528 RFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTN 587

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                  +L  +  + +  D   +N  I+ + + G++       + + +    P+   + 
Sbjct: 588 CCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYN 647

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           + +  Y  L M   A      MI
Sbjct: 648 SFVTGYKNLKMMAEASKFYYSMI 670



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 143/340 (42%), Gaps = 2/340 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           T L+V   +      A  LF+ M   G      +Y  ++ A     +  +A    ++M  
Sbjct: 157 TDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACVVGRMHGDAVRLFDEMAG 216

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            +  KPD   Y+I I    K    D   ++L +M   G++    TYN+++D   K  + +
Sbjct: 217 -AGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMD 275

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E       M+ + G   D+F   +++  Y   G I K    ++E    GV     T  +L
Sbjct: 276 EALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVL 335

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K     GM D+   +   M ++   P+   +N+VI+   +    E     F  +   G+
Sbjct: 336 IKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGV 395

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P+  TY  L+   SK   + +  ++  +++ + V       + ++  Y + G +++  +
Sbjct: 396 -PDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALK 454

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           L+  M  +   P+ +T+ T+++ Y      + A  L N+M
Sbjct: 455 LYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEM 494



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 133/316 (42%), Gaps = 11/316 (3%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVMLSDGLK 146
           IK+K +    K + LL +       C  +T  +++ G C   +  +   + +  +S+G  
Sbjct: 479 IKKKAFD---KAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFV 535

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           P+   Y ++++ + ++G++  A +    M  K ++   P++ TY+  I    + +  DL 
Sbjct: 536 PTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGIT---PNIVTYTSFIDGYCRTNCCDLA 592

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K+L  M   GI      YN  I+ + K          F  ++   G  P++   NS ++
Sbjct: 593 VKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSH-ALHFLVLLLKDGLTPNVTVYNSFVT 651

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            Y N   + +  K+Y       + AD +    L   + + G       +   M      P
Sbjct: 652 GYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYSEMLANHNIP 711

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
              T+  +     ++G I+  +     M    + PN++TY  L++A+ + G + +   + 
Sbjct: 712 DDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRDGKLQEAFQLH 771

Query: 385 RQVENSDVILDTPFFN 400
            ++ +S V+ D   +N
Sbjct: 772 DKMLSSGVVPDDTTYN 787



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 10/221 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           +S MV + G  PD  +   ++ A     +       ++E    G  AD +  +++ ++  
Sbjct: 141 YSRMV-TRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACV 199

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
              M+     + D M      P    Y I I    K    ++  +   KM+  G+KP   
Sbjct: 200 VGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDF 259

Query: 363 TYCSLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           TY S+V    K G     L +K   +L   +  DV L T     ++  Y   G++ K  +
Sbjct: 260 TYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATT----LMQGYCLHGEIGKALD 315

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           LF         P N+T+  +I+  +A GMT+    L  +MI
Sbjct: 316 LFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMI 356



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 39/207 (18%)

Query: 127 CKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CKQ   +  L    ++L DGL P+V VY + V+ Y    ++ EA                
Sbjct: 619 CKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEA---------------- 662

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
                      +KF+   + ++I A+            Y T+IDG+ K          +S
Sbjct: 663 -----------SKFYYSMIKQRIAADTE---------IYTTLIDGFSKVGNVAFALELYS 702

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+ +    PD  T  ++      SG+I+  ++  ++   + V  +  T N+L  ++ R 
Sbjct: 703 EMLANHNI-PDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRD 761

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           G   +   + D M      P   TYNI
Sbjct: 762 GKLQEAFQLHDKMLSSGVVPDDTTYNI 788


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K K+   A   F  + +++  +    T+T L+  L    +   A+ L   M+   
Sbjct: 197 IDSLCKTKRVNDAFDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+V  Y+AL+ A+ ++G + EA     +M  +S   PD+ TYS LI       R D  
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEA 314

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G     V+YNT+I+G+ KAK+ E+    F  M + G    +  T N++I 
Sbjct: 315 NQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG-LVSNTVTYNTLIQ 373

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  +G+++K ++++++ +  G+  DI T NIL       G  +K   + + MQKR    
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            +VTY  VI    K G +E+    F  +  +G+KP+ +TY +++S     GL+ +V+++
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEAL 492



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 167/363 (46%), Gaps = 3/363 (0%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
            LAL I G + +  +   R  T   L+    +  +   A  L + M+  G KP +  Y A
Sbjct: 137 SLALSILGKMLKLGYEPDRV-TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++ +  ++  +++AF    +++     +P+V TY+ L+       R+    ++L++M   
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I  + +TY+ ++D + K  K  E +  F  MV      PDI T +S+I+       I++
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLINGLCLHDRIDE 313

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             + ++     G  AD+ + N L   + +A   +    +   M +R      VTYN +I+
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            F +AG ++K +E+F +M   G+ P+  TY  L+      G + K   I   ++  ++ L
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   +  +I    + G VE+   LF ++  +   PD +T+ TM+      G+    + L 
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493

Query: 455 NKM 457
            KM
Sbjct: 494 TKM 496



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 157/338 (46%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++     C Q   A  +   ML  G +P      +LV+ + +   + +A S ++ M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   KPD+  Y+ +I S  K  R +       E+   GI  + VTY  +++G   + +
Sbjct: 182 VEIG-YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           + +     S M++     P++ T ++++ A+  +G + + ++ + E   M +  DI T +
Sbjct: 241 WSDAARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L          D+   + D M  +     VV+YN +I  F KA  +E   + F++M  R
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N++TY +L+  + +AG + K      Q++   +  D   +N ++      G++EK 
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 419

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +F  M++R    D +T+ T+I+     G  E A +L
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 457



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 141/328 (42%), Gaps = 37/328 (11%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L++A    +DM   S   P +  ++ L+ +  K  ++D++  +  +M  LGI     T+N
Sbjct: 66  LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 225 TII-----------------------------------DGYGKAKKFEEMESSFSAMVES 249
            +I                                   +G+ +  +  +  S    MVE 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
           G   PDI   N++I +   +  +     ++ E    G++ ++ T   L      +  +  
Sbjct: 185 GY-KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              ++  M K+   P V+TY+ +++ F K G + + +E F++M    + P+ +TY SL++
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 303

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
                  I + + +   + +   + D   +N +I+ + +A  VE   +LF  M +R  V 
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 363

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           + +T+ T+IQ +   G  + AQ   ++M
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQM 391



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K KK++ +  S    +E  G   D++T N +I+ +     +      
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVV-ISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + D  T+  L   + R        S++D M +  + P +V YN +I++  K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              +    ++FK+++ +G++PN +TY +LV+    +        +L  +    +  +   
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++ ++ A+ + G V +  ELF  M      PD +T++++I         + A  + + M+
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 459 A 459
           +
Sbjct: 323 S 323


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 160/393 (40%), Gaps = 70/393 (17%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L E M++ G  P++  ++ L+    ++GL +        M     C PDV  Y+ +I   
Sbjct: 239 LMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAE-HGCAPDVRMYATIIDGV 297

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 250
            K  R ++   IL  M   G+  + V YNT++ G   A ++EE E   + M +       
Sbjct: 298 CKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDD 357

Query: 251 -----------------------------GCHPDIFTLNSMISAYGNSGNIEKM------ 275
                                        GC PD+ T  ++I+ +   G I++       
Sbjct: 358 VTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRS 417

Query: 276 -----------------------EKWYNEFNLM------GVKADIQTLNILTKSYGRAGM 306
                                  E+W +   LM      G   +  T N L     + G+
Sbjct: 418 MAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 477

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            ++   ++  M      P +++Y+ VI+  GKAG+ ++  E    M  +GM PN+I Y S
Sbjct: 478 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSS 537

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           + SA S  G I KV  +   ++++ V  D   +N +IS+  + G+ ++  E    M    
Sbjct: 538 IASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSG 597

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           CVP+  T+  +I+   + G  + AQ +  ++ +
Sbjct: 598 CVPNESTYTILIRGLASEGFVKEAQEILTELCS 630



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 165/377 (43%), Gaps = 8/377 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ---PEQASLLFEVML 141
           L+ A +   ++ A+   G+LR               +V+   C Q    E   LL +++ 
Sbjct: 153 LEAACRASGFRGAV---GVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLP 209

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           S G +P V  Y A++     +         + +M + + C P++ T+S LI    +   F
Sbjct: 210 SFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVA-AGCPPNIVTFSTLIGHLCRNGLF 268

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           + + ++ A+M+  G       Y TIIDG  K ++ E      + M  S G  P++   N+
Sbjct: 269 ERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM-PSYGLSPNVVCYNT 327

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++    ++   E+ E    E        D  T NIL     + G+ D++  V++ M +  
Sbjct: 328 LLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHG 387

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P V+TY  VI  F K G I++     + M   G +PN+++Y  ++     A   +  +
Sbjct: 388 CMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAE 447

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++ Q+       +   FN +I+   + G VE+  EL   M    C PD I+++T+I   
Sbjct: 448 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 507

Query: 442 NALGMTEAAQNLENKMI 458
              G T+ A  L N M+
Sbjct: 508 GKAGNTDEALELLNVMV 524



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 1/315 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+   Y  LV A    G + +A + ++DM     C P    Y + +++  +   F   
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMAR-RGCAPTPPMYHVTLEAACRASGFRGA 165

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L ++   G        N ++         +E       ++ S GC PD+ + N+++ 
Sbjct: 166 VGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLR 225

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +     ++    E    G   +I T + L     R G+++++  V   M +    P
Sbjct: 226 GLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAP 285

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            V  Y  +I+   K   +E       +M   G+ PN + Y +L+     A    + + +L
Sbjct: 286 DVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLL 345

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ + D  LD   FN ++    Q G V+++ E+   M E  C+PD IT+ T+I  +   
Sbjct: 346 AEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKE 405

Query: 445 GMTEAAQNLENKMIA 459
           G+ + A  L   M A
Sbjct: 406 GLIDEAVMLLRSMAA 420


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 153/319 (47%), Gaps = 7/319 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++Q  ++    T+T ++ +LG+ +Q      L   M  D  KP+V  Y  +
Sbjct: 346 MALGFFHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRI 405

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG++  L EA     +M+  +  +PD  TY  LI    K    ++   +   M  +G
Sbjct: 406 IHAYGRANYLREAVKVFEEMEE-AGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVG 464

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +++  GK  +       F  M+E+ GC P++ T N +I+    + N + +
Sbjct: 465 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIEN-GCTPNLVTYNIIIALQAKARNYDNV 523

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K Y +  + G + D  T +I+ +  G  G  D+  +V   M +R + P    Y ++++ 
Sbjct: 524 VKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RRDWAPDEPVYGLLVDL 582

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +GKAG+++K   ++  M   G++PN  T  SL+SA+ K        S+L+ +    ++  
Sbjct: 583 WGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPS 642

Query: 396 ----TPFFNCIISAYGQAG 410
               T   +C   A+ Q G
Sbjct: 643 LQTYTLLLSCCTDAHAQMG 661



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 130/278 (46%), Gaps = 2/278 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ +I    +  +F ++  +L EM+    + + VTYN II  YG+A    E   
Sbjct: 361 KHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVK 420

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M E  G  PD  T  ++I  +  +G +E     Y     +G+  D  T + +    
Sbjct: 421 VFEEM-EEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCL 479

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+ G       +   M +    P +VTYNI+I    KA + + + + ++ M+  G +P+ 
Sbjct: 480 GKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDK 539

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  ++      G + + +++  ++   D   D P +  ++  +G+AG+V+K    +  
Sbjct: 540 ITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHA 598

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M +    P+  T  +++ A+  +   + A ++   M+A
Sbjct: 599 MLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLA 636



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 84/153 (54%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G K D  T   +    G+A  +  MR+++  M +    PTVVTYN +I  +G+A ++ + 
Sbjct: 359 GFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREA 418

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F++M+  G +P+ +TYC+L+  ++KAG +     +  +++   +  DT  ++ +++ 
Sbjct: 419 VKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC 478

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
            G+ G +    +LF  M E  C P+ +T+  +I
Sbjct: 479 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIII 511



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 2/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T+I   G+A++F  M +    M     C P + T N +I AYG +  + +
Sbjct: 359 GFKHDGHTYTTMIGILGQARQFGIMRNLLHEM-NRDRCKPTVVTYNRIIHAYGRANYLRE 417

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             K + E    G + D  T   L   + +AG  +    +   MQ+    P   TY+ ++ 
Sbjct: 418 AVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVN 477

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GK G +    + F +M   G  PN +TY  +++  +KA     V  + R ++ +    
Sbjct: 478 CLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRP 537

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +++   +F+ M+ R   PD   +  ++  +   G  + A    
Sbjct: 538 DKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWY 596

Query: 455 NKMI 458
           + M+
Sbjct: 597 HAML 600


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 174/418 (41%), Gaps = 66/418 (15%)

Query: 102 GLLRQQQWY-----QARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GL+ Q QW         C     T+T L+    K KQ  QA+ +F  M+  G +P+   Y
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSD---------CK------PDVYTYSILIKSCTK 197
            ALV    ++G + +AF     +   SD         C+      P+V TY  L+    K
Sbjct: 397 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 456

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+ D   ++L  M   G E + + Y+ +IDG+ KA K +  +  F  M + G   P + 
Sbjct: 457 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY-LPSVH 515

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I      G ++   K  ++        ++ T   +     R G  +K   ++  M
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++   P VVTY  +I+  GKAG I+   + F +M  +G  PN +TY  L++    AGL+
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 635

Query: 378 MKVD---------------------------------SILRQVENSDVILDTPFFNCIIS 404
            K                                    IL ++E+   +   P +  +I 
Sbjct: 636 DKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLID 695

Query: 405 AYGQAGDVEKMGELFLTMKERHCVP-----DNITFATMIQAYNALGMTEAAQNLENKM 457
            + +AG +E   EL   M E   VP     DN  +A++IQA       E A  L ++M
Sbjct: 696 CFSKAGRLEIAMELHKEMME---VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 750



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 168/376 (44%), Gaps = 18/376 (4%)

Query: 99  KIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F L+++  ++ +     T++K++  L    + E+A LLF+ M   G+ P V  YT L+
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            ++ ++GL+++A     +M+SV  C P V TY+ LI +  K  +      I   M   G 
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVG-CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 389

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG---------CH------PDIFTLNS 261
             + VTY  ++DG  KA    +    ++ ++ +           C       P++ T  +
Sbjct: 390 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 449

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++     +  ++   +  +     G + +    + L   + +AG  D  + V   M K  
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+V TY  +I+   K G ++   +   +M      PN +TY +++    + G   K  
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L  +E      +   +  +I   G+AG ++   +LF  M  + C P+ +T+  +I   
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629

Query: 442 NALGMTEAAQNLENKM 457
            A G+ + A+ L  +M
Sbjct: 630 CAAGLLDKARLLLGEM 645



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 40/357 (11%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG CK+      +  +M+++G  P+  ++ +LV +Y        A+  +N M +   C P
Sbjct: 158 LGWCKR------IINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG-CPP 210

Query: 184 DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 232
               Y+I I S     +       DL EKI  EM  L   C     +   +   + G GK
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM--LAANCVLNKVNVANFARCLCGVGK 268

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
              F++       M+  G   PD  T + +I+   ++  +EK    + E  ++GV  D+ 
Sbjct: 269 ---FDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 324

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T  IL  S+ +AG+ ++ + + + M+     PTVVTY  +I  + KA  + +  + F +M
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC---------- 401
              G +PN +TY +LV    KAG I K   +  ++  +    D+ F F C          
Sbjct: 385 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 444

Query: 402 -----IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                ++    +A  V+   EL   M    C P++I +  +I  +   G  ++AQ +
Sbjct: 445 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 13/346 (3%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           CK+   A  L +++  +  K    + T ++S   ++   DEA S ++ M+  S C P+V 
Sbjct: 86  CKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVV 143

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y   K +       + M
Sbjct: 144 TYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRM 203

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNI------EKMEKWYNEFNLMGVKADIQTLNI--LT 298
             + GC P     N  I +      +      +  EK Y E  ++     +  +N+    
Sbjct: 204 T-TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGE--MLAANCVLNKVNVANFA 260

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           +     G +DK   ++  M ++ F P   TY+ VI     A  +EK    F++MK  G+ 
Sbjct: 261 RCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 320

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY  L+ ++ KAGLI +   +  ++ +         +  +I AY +A  V +  ++
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 380

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           F  M +  C P+++T+  ++      G    A  +  K+I   +++
Sbjct: 381 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 426



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 93/254 (36%), Gaps = 44/254 (17%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D   K  +  LA+K+       Q  +  C     T+T ++  L +  + E+A  L  +M
Sbjct: 521 IDRMFKDGRLDLAMKVL-----SQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G  P+V  YTAL+   G++G +D +      M S   C P+  TY +LI        
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM-SRKGCSPNYVTYRVLINHLCAAGL 634

Query: 201 FDLIEKILAEMS------YL-GIECS--------------------------AVTYNTII 227
            D    +L EM       YL G  C+                          A  Y  +I
Sbjct: 635 LDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLI 694

Query: 228 DGYGKAKKFE-EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           D + KA + E  ME     M        D     S+I A   +  +E+  + Y+E    G
Sbjct: 695 DCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRG 754

Query: 287 VKADIQTLNILTKS 300
              ++     L K 
Sbjct: 755 FVPELSVFVCLIKG 768



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+ VTYN +++    AG ++      K+M   G   +  T      A  K G   +  
Sbjct: 36  YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWA 92

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
             L  +E  D  LDT     +IS   +A   ++       M+   C+P+ +T+ T++  +
Sbjct: 93  DALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGF 152


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 2/272 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y++ +KS     +F LIE++  EM   G+E   +TY+TII    +   + +    F  M 
Sbjct: 189 YNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMY 248

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           ++G   PD  T ++++  Y  SG +E++   Y      G K D    ++L K +G AG Y
Sbjct: 249 KTG-LMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDY 307

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D +R V+  M+     P VV YN ++E  G+AG        F +M   G+ PN  T  +L
Sbjct: 308 DGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTAL 367

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-H 426
           V  Y KA        +  +++     +D   +N +++     G  E+   LF  MKE   
Sbjct: 368 VKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQ 427

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           C PDN ++  M+  Y + G  E A  L  +M+
Sbjct: 428 CRPDNFSYTAMLNIYGSGGKAEKAMELFEEML 459



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 164/358 (45%), Gaps = 48/358 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++    +C    +A   FE M   GL P    Y+A++  Y +SG ++E  S + + 
Sbjct: 223 TYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLS-LYER 281

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  KPD   +S+L K   +   +D I  +L EM  + ++ + V YNT+++  G+A K
Sbjct: 282 AVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGK 341

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                S F+ M+E+ G  P+  TL +++  YG +       +W         +  +Q   
Sbjct: 342 PGLARSLFNEMLEA-GLTPNEKTLTALVKIYGKA-------RW--------ARDALQ--- 382

Query: 296 ILTKSYGRAGMYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
                     ++++M++    MDF          + YN ++      G  E+ E  F  M
Sbjct: 383 ----------LWEEMKAKKWPMDF----------ILYNTLLNMCADIGLEEEAERLFNDM 422

Query: 353 KHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           K     +P++ +Y ++++ Y   G   K   +  ++  + V ++     C++   G+A  
Sbjct: 423 KESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKR 482

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
           ++ +  +F    +R   PD+     ++   + + + E++++ E K++A  E + KKL+
Sbjct: 483 IDDVVYVFDLSIKRGVKPDDRLCGCLL---SVMALCESSEDAE-KVMACLERANKKLV 536



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 45/345 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++ +  K  + E+   L+E  ++ G KP    ++ L   +G++G  D     + +M
Sbjct: 258 TYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEM 317

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-- 233
           KS+ D KP+V  Y+ L+++  +  +  L   +  EM   G+  +  T   ++  YGKA  
Sbjct: 318 KSM-DVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARW 376

Query: 234 -------------KKF--------------------EEMESSFSAMVESGGCHPDIFTLN 260
                        KK+                    EE E  F+ M ES  C PD F+  
Sbjct: 377 ARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYT 436

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           +M++ YG+ G  EK  + + E    GV+ ++     L +  G+A   D +  V D   KR
Sbjct: 437 AMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKR 496

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P       ++         E  E+    ++    K   +T+ +L+         +K 
Sbjct: 497 GVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKK--LVTFVNLIVDEKTEYETVKE 554

Query: 381 DSILRQVENSDVILDTPFFNCII------SAYGQAGDVEKMGELF 419
           +  L  +  + V    PF NC+I      + + +A ++  +G LF
Sbjct: 555 EFKL-VINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLF 598



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GV+ D  T + +     R  +Y+K     + M K    P  VTY+ +++ + K+G +E++
Sbjct: 216 GVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEV 275

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              +++    G KP++I +  L   + +AG    +  +L+++++ DV  +   +N ++ A
Sbjct: 276 LSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEA 335

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            G+AG       LF  M E    P+  T   +++ Y        A  L  +M A K
Sbjct: 336 MGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKK 391



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/155 (18%), Positives = 74/155 (47%), Gaps = 1/155 (0%)

Query: 307 YDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + K  +  ++++ +  FP   + YN+ +++       + +EE   +M   G++ ++ITY 
Sbjct: 166 WQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYS 225

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           ++++   +  L  K      ++  + ++ D   ++ I+  Y ++G VE++  L+      
Sbjct: 226 TIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVAT 285

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              PD I F+ + + +   G  +  + +  +M +M
Sbjct: 286 GWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSM 320


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 48/388 (12%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ +LGK K   +A  +F  +     KP+ + Y +++    Q G  ++     N+M 
Sbjct: 162 LSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMC 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--------------------------------LI 204
           +  DC PD  TYS LI +  K  R D                                 +
Sbjct: 222 NEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRV 281

Query: 205 EKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           EK L    EM   G   +  TY  +I G GKA K EE  S F  M++  GC PD+  +N+
Sbjct: 282 EKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKE-GCKPDVVLINN 340

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF----- 316
           +I+  G +G +    K + E   +    ++ T N + K    A    K R+   F     
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK----ALFESKARASEAFLWYEK 396

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P+  TY+I+I+ F K   +EK     ++M  +G  P    YCSL++A  KA  
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
               + + +++  +        +  +I   G+ G + +  +LF  MK+  C PD   +  
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++     +GMT+ A +L   +  M+EN 
Sbjct: 517 LMSGMVRVGMTDEAHSL---LRTMEENG 541



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 164/378 (43%), Gaps = 38/378 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK  + + A  LF+ M  +GL P+  +YT ++  Y + G +++A   + +M
Sbjct: 232 TYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM 291

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C   VYTY+ LIK   K  + +    I   M   G +   V  N +I+  GKA +
Sbjct: 292 KE-KGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGR 350

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +    F  M ES  C P++ T N++I A + +     +   WY +    GV     T 
Sbjct: 351 LADAIKLFEEM-ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTY 409

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFP------------------------------ 324
           +IL   + +    +K   +++ M ++ F P                              
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRE 469

Query: 325 -----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                +   Y ++I+  GK G + +  + F +MK  G  P+   Y +L+S   + G+  +
Sbjct: 470 NCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDE 529

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             S+LR +E +    D    N I++ + + G  +   E+F  MK     PD +++ T++ 
Sbjct: 530 AHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLG 589

Query: 440 AYNALGMTEAAQNLENKM 457
             +  GM E A  L  +M
Sbjct: 590 CLSRAGMFEEAAKLMKEM 607



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 38/329 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  +GK  + E+A  +F  ML +G KP V +   L++  G++G L +A     +M
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
           +S+  C P+V                                    +TYSILI    K +
Sbjct: 362 ESLQ-CTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +    +L EM   G       Y ++I+  GKAK++E     F  + E+ G +      
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG-YSSARVY 479

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             MI   G  G + +    +NE   +G   D+   N L     R GM D+  S++  M++
Sbjct: 480 AVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEE 539

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + ++NI++  F + G  +   E F +MK+  +KP+ ++Y +++   S+AG+  +
Sbjct: 540 NGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEE 599

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +++++ +     D   ++ I+ A G+
Sbjct: 600 AAKLMKEMNSKGFEYDLITYSSILEAVGK 628



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 138/309 (44%), Gaps = 6/309 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y AL+    ++G+L E + TI +M   S C       S ++K   K    +    I  ++
Sbjct: 127 YMALIHCLDEAGMLGEMWKTIQEMVR-STCVIGPADLSEIVKVLGKAKMVNKALSIFYQI 185

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                + ++ TYN++I    +    E++   ++ M   G C PD  T +++I+A+G  G 
Sbjct: 186 KGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGR 245

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +     ++E    G+    +    +   Y + G  +K   ++  M+++    TV TY  
Sbjct: 246 DDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTE 305

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+  GKAG +E+    F  M   G KP+ +   +L++   KAG +     +  ++E+  
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFL---TMKERHCVPDNITFATMIQAYNALGMTE 448
              +   +N +I A  ++    +  E FL    MKE   VP + T++ +I  +      E
Sbjct: 366 CTPNVVTYNTVIKALFESK--ARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423

Query: 449 AAQNLENKM 457
            A  L  +M
Sbjct: 424 KALLLLEEM 432



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFK-KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V + +V E       I    ++FK   K R  + +S TY +L+    +AG++ ++   ++
Sbjct: 89  VDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQ 148

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++  S  ++     + I+   G+A  V K   +F  +K R C P + T+ +MI      G
Sbjct: 149 EMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEG 208

Query: 446 MTEAAQNLENKM 457
             E    L N+M
Sbjct: 209 HHEKVHELYNEM 220


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 174/418 (41%), Gaps = 66/418 (15%)

Query: 102 GLLRQQQWY-----QARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GL+ Q QW         C     T+T L+    K KQ  QA+ +F  M+  G +P+   Y
Sbjct: 272 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 331

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSD---------CK------PDVYTYSILIKSCTK 197
            ALV    ++G + +AF     +   SD         C+      P+V TY  L+    K
Sbjct: 332 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 391

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+ D   ++L  M   G E + + Y+ +IDG+ KA K +  +  F  M + G   P + 
Sbjct: 392 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY-LPSVH 450

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I      G ++   K  ++        ++ T   +     R G  +K   ++  M
Sbjct: 451 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 510

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++   P VVTY  +I+  GKAG I+   + F +M  +G  PN +TY  L++    AGL+
Sbjct: 511 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 570

Query: 378 MKVD---------------------------------SILRQVENSDVILDTPFFNCIIS 404
            K                                    IL ++E+   +   P +  +I 
Sbjct: 571 DKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLID 630

Query: 405 AYGQAGDVEKMGELFLTMKERHCVP-----DNITFATMIQAYNALGMTEAAQNLENKM 457
            + +AG +E   EL   M E   VP     DN  +A++IQA       E A  L ++M
Sbjct: 631 CFSKAGRLEIAMELHKEMME---VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 685



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 168/376 (44%), Gaps = 18/376 (4%)

Query: 99  KIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F L+++  ++ +     T++K++  L    + E+A LLF+ M   G+ P V  YT L+
Sbjct: 206 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 265

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            ++ ++GL+++A     +M+SV  C P V TY+ LI +  K  +      I   M   G 
Sbjct: 266 DSFCKAGLIEQAQWLFEEMRSVG-CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 324

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG---------CH------PDIFTLNS 261
             + VTY  ++DG  KA    +    ++ ++ +           C       P++ T  +
Sbjct: 325 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 384

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++     +  ++   +  +     G + +    + L   + +AG  D  + V   M K  
Sbjct: 385 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 444

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+V TY  +I+   K G ++   +   +M      PN +TY +++    + G   K  
Sbjct: 445 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 504

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L  +E      +   +  +I   G+AG ++   +LF  M  + C P+ +T+  +I   
Sbjct: 505 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 564

Query: 442 NALGMTEAAQNLENKM 457
            A G+ + A+ L  +M
Sbjct: 565 CAAGLLDKARLLLGEM 580



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 40/357 (11%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG CK+      +  +M+++G  P+  ++ +LV +Y        A+  +N M +   C P
Sbjct: 93  LGWCKR------IINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG-CPP 145

Query: 184 DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 232
               Y+I I S     +       DL EKI  EM  L   C     +   +   + G GK
Sbjct: 146 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM--LAANCVLNKVNVANFARCLCGVGK 203

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
              F++       M+  G   PD  T + +I+   ++  +EK    + E  ++GV  D+ 
Sbjct: 204 ---FDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 259

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T  IL  S+ +AG+ ++ + + + M+     PTVVTY  +I  + KA  + +  + F +M
Sbjct: 260 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 319

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC---------- 401
              G +PN +TY +LV    KAG I K   +  ++  +    D+ F F C          
Sbjct: 320 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 379

Query: 402 -----IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                ++    +A  V+   EL   M    C P++I +  +I  +   G  ++AQ +
Sbjct: 380 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 13/346 (3%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           CK+   A  L +++  +  K    + T ++S   ++   DEA S ++ M+  S C P+V 
Sbjct: 21  CKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVV 78

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y   K +       + M
Sbjct: 79  TYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRM 138

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNI------EKMEKWYNEFNLMGVKADIQTLNI--LT 298
             + GC P     N  I +      +      +  EK Y E  ++     +  +N+    
Sbjct: 139 T-TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGE--MLAANCVLNKVNVANFA 195

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           +     G +DK   ++  M ++ F P   TY+ VI     A  +EK    F++MK  G+ 
Sbjct: 196 RCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 255

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY  L+ ++ KAGLI +   +  ++ +         +  +I AY +A  V +  ++
Sbjct: 256 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 315

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           F  M +  C P+++T+  ++      G    A  +  K+I   +++
Sbjct: 316 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 361



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 44/263 (16%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D   K  +  LA+K+       Q  +  C     T+T ++  L +  + E+A  L  +M
Sbjct: 456 IDRMFKDGRLDLAMKVL-----SQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 510

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G  P+V  YTAL+   G++G +D +      M S   C P+  TY +LI        
Sbjct: 511 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM-SRKGCSPNYVTYRVLINHLCAAGL 569

Query: 201 FDLIEKILAEMS------YL-GIECS--------------------------AVTYNTII 227
            D    +L EM       YL G  C+                          A  Y  +I
Sbjct: 570 LDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLI 629

Query: 228 DGYGKAKKFE-EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           D + KA + E  ME     M        D     S+I A   +  +E+  + Y+E    G
Sbjct: 630 DCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRG 689

Query: 287 VKADIQTLNILTKSYGRAGMYDK 309
              ++     L K       +D+
Sbjct: 690 FVPELSVFVCLIKGLVEVKKWDE 712


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 2/334 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K K   +A  LF  M+S G+ P V  Y+AL+S +   G L +A    N M  + + KPDV
Sbjct: 237 KVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKM-ILENIKPDV 295

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YT++IL+ +  K  +    + +   M   GI+ + VTYN+++DGY   K+  + +S F+ 
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M + GG +PDI + + MI+ +      ++    + E +   +  D+ T + L     ++G
Sbjct: 356 MAQ-GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
                  ++D M  R   P + TYN +++   K   ++K      K K +G +P+  TY 
Sbjct: 415 RISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYS 474

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+    ++G +     +   +      LD   +  +I  +   G   +   L   M++ 
Sbjct: 475 ILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN 534

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            C+PD  T+  +I +       + A+ L  +MIA
Sbjct: 535 GCIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 568



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 161/339 (47%), Gaps = 12/339 (3%)

Query: 125 GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  E  + L  +   DG  ++P+V +Y  ++ +  +  L++EAF   ++M S     
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVS-KGIS 257

Query: 183 PDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           PDV TYS LI       +     DL  K++ E     I+    T+N +++ + K  K +E
Sbjct: 258 PDVVTYSALISGFCILGKLKDAIDLFNKMILE----NIKPDVYTFNILVNAFCKDGKMKE 313

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            ++ F  M++ G   P+  T NS++  Y     + K +  +N     GV  DIQ+ +I+ 
Sbjct: 314 GKTVFDMMMKQG-IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             + +   +D+  ++   M ++   P VVTY+ +I+   K+G I    +   +M  RG+ 
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVP 432

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN  TY S++ A  K   + K  ++L + ++     D   ++ +I    Q+G +E   ++
Sbjct: 433 PNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKV 492

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           F  +  +    D   +  MIQ +   G+   A  L +KM
Sbjct: 493 FEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKM 531



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 159/363 (43%), Gaps = 45/363 (12%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K       L + M   G+KP++     L++ + Q GL+  AFS    + 
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FH---------------------------- 199
            +    PD  T++ L K  C K        FH                            
Sbjct: 148 KMGYV-PDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGET 206

Query: 200 --RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
               DL++++   +    ++ + V YNTIID   K K   E    FS MV S G  PD+ 
Sbjct: 207 RAALDLLQRVDGNL----VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMV-SKGISPDVV 261

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T +++IS +   G ++     +N+  L  +K D+ T NIL  ++ + G   + ++V D M
Sbjct: 262 TYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            K+   P  VTYN +++ +     + K +  F  M   G+ P+  +Y  +++ + K    
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +  ++ +++   ++I D   ++ +I    ++G +    +L   M +R   P+  T+ ++
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSI 441

Query: 438 IQA 440
           + A
Sbjct: 442 LDA 444



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 158/341 (46%), Gaps = 12/341 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L   L    Q +QA L  + +++ G       Y  L+    + G   E  + ++ +
Sbjct: 157 TFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG---ETRAALDLL 213

Query: 176 KSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           + V     +P+V  Y+ +I S  K    +    + +EM   GI    VTY+ +I G+   
Sbjct: 214 QRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCIL 273

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKAD 290
            K ++    F+ M+      PD++T N +++A+   G   KM++    F++M   G+K +
Sbjct: 274 GKLKDAIDLFNKMILEN-IKPDVYTFNILVNAFCKDG---KMKEGKTVFDMMMKQGIKPN 329

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T N L   Y      +K +S+ + M +    P + +Y+I+I  F K    ++    FK
Sbjct: 330 FVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M  + + P+ +TY SL+   SK+G I     ++ Q+ +  V  +   +N I+ A  +  
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTH 449

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            V+K   L    K++   PD  T++ +I+     G  E A+
Sbjct: 450 QVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDAR 490



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 4/241 (1%)

Query: 122 VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +M G C  K+  +A  +F  M   G+ P +  Y+ +++ + +    DEA +   +M    
Sbjct: 336 LMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR-K 394

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +  PDV TYS LI   +K  R     +++ +M   G+  +  TYN+I+D   K  + ++ 
Sbjct: 395 NIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKA 454

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
            +  +   +  G  PDI T + +I     SG +E   K + +  + G   D+    I+ +
Sbjct: 455 IALLTKF-KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQ 513

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            +   G++++  +++  M+     P   TY I+I +  K    +  E+  ++M  RG+  
Sbjct: 514 GFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPL 573

Query: 360 N 360
           N
Sbjct: 574 N 574



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 91/205 (44%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P  F  N ++ +   S +   +     +    G+K ++   NIL   + + G+     SV
Sbjct: 83  PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 142

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              + K  + P  +T+  + +     G I++   +  K+   G   + I+Y +L+    K
Sbjct: 143 FAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCK 202

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G       +L++V+ + V  +   +N II +  +   V +  +LF  M  +   PD +T
Sbjct: 203 VGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVT 262

Query: 434 FATMIQAYNALGMTEAAQNLENKMI 458
           ++ +I  +  LG  + A +L NKMI
Sbjct: 263 YSALISGFCILGKLKDAIDLFNKMI 287


>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           viburnoides]
          Length = 337

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTL 63

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S   +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 126/251 (50%), Gaps = 1/251 (0%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I + +   G     V YN +I+ +GKAK F E  S    M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEM-KAAGVMPNTASYSTLLTMY 67

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGL 247

Query: 447 TEAAQNLENKM 457
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 153/341 (44%), Gaps = 11/341 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 6   AISIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLL 64

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 65  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 124 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  + +  +I 
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGXEIDQILFQTMIV 240

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I   + +   + AG I +   + RQ  ++  + 
Sbjct: 241 AYERAGLVA----HAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           D   F  +I    +      + E+F  M+     PD+   A
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIA 337



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   
Sbjct: 8   SIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTM 66

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 67  YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 126

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L  
Sbjct: 127 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 186

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 187 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYST 62

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 124

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 125 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           ++ EM   GIE +++TY+TII  +GK  K +     F  +  S G   D     +MI AY
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL-RSSGXEIDQILFQTMIVAY 242

Query: 267 GNSGNIEKMEKWYNEF 282
             +G +   ++  +E 
Sbjct: 243 ERAGLVAHAKRLLHEL 258


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 153/320 (47%), Gaps = 2/320 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L    +   AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   PD++TYS LI       R D  + +   M       + VTYNT+I G+ KAK+
Sbjct: 353 IKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    F  M + G    +  T  ++I  +  +   +  +  + +    GV  DI T +
Sbjct: 412 VDEGMELFREMSQRG-LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL       G  +    V +++Q+    P + TYNI+IE   KAG +E   + F  +  +
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 530

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN +TY +++S + + GL  + D++ R+++    + D+  +N +I A+ + GD    
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAAS 590

Query: 416 GELFLTMKERHCVPDNITFA 435
            EL   M+    V D  T  
Sbjct: 591 AELIREMRSCRFVGDASTIG 610



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 161/347 (46%), Gaps = 2/347 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  YQ    TF  L+  L +  +  +A  L + M+  G +P +  Y  +V+   + G +D
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            A S +  M+     +P V  Y+ +I +   +   +    +  EM   GI  + VTYN++
Sbjct: 239 LALSLLKKMEQ-GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I       ++ +     S M+E    +P++ T +++I A+   G + + EK Y+E     
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  DI T + L   +      D+ + + + M  +  FP VVTYN +I+ F KA  +++  
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M  RG+  N++TY +L+  + +A        + +Q+ +  V+ D   ++ ++   
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              G VE    +F  ++     PD  T+  MI+     G  E   +L
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 523



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 165/375 (44%), Gaps = 3/375 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L    K  K+ L + + G   Q         T++ L+    +  Q   A  +   M+  G
Sbjct: 88  LSAIAKMNKFDLVISL-GEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +P +    +L++ +     + +A S +  M  +   +PD +T++ LI    + +R    
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG-YQPDSFTFNTLIHGLFRHNRASEA 205

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             ++  M   G +   VTY  +++G  K    +   S    M E G   P +   N++I 
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNTIID 264

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
           A  N  N+      + E +  G++ ++ T N L +     G +     ++  M +R   P
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            VVT++ +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +   + 
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 384

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             + + D   +   +N +I  + +A  V++  ELF  M +R  V + +T+ T+I  +   
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444

Query: 445 GMTEAAQNLENKMIA 459
              + AQ +  +M++
Sbjct: 445 RECDNAQIVFKQMVS 459



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 2/294 (0%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           LD+A +   DM   S   P +  +S L+ +  K ++FDL+  +  +M  LGI  +  TY+
Sbjct: 62  LDDAVNLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+ + +  +     +  + M++  G  PDI TLNS+++ + +   I        +   
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           MG + D  T N L     R     +  +++D M  +   P +VTY IV+    K G I+ 
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                KKM+   ++P  + Y +++ A      +    ++  +++N  +  +   +N +I 
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                G       L   M ER   P+ +TF+ +I A+   G    A+ L ++MI
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 36/264 (13%)

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K ++  + F  MV+S    P I   + ++SA       + +     +   +G+  ++ T 
Sbjct: 61  KLDDAVNLFGDMVKSRP-FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTY 119

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +IL   + R        +V+  M K  + P +VT N ++  F     I        +M  
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179

Query: 355 RGMKPNSITYCSL-----------------------------------VSAYSKAGLIMK 379
            G +P+S T+ +L                                   V+   K G I  
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             S+L+++E   +      +N II A     +V     LF  M  +   P+ +T+ ++I+
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 440 AYNALGMTEAAQNLENKMIAMKEN 463
                G    A  L + MI  K N
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKIN 323


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 152/319 (47%), Gaps = 7/319 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++Q  ++    T+T ++ +LG+ +Q      L + M     KP+V  Y  +
Sbjct: 342 VALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRI 401

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG++  L EA     +M+  +  +PD  TY  LI    K    D+   +   M  +G
Sbjct: 402 IHAYGRANYLKEAVKVFEEMQE-AGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVG 460

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +++  GK  +       F  M+E+ GC P++ T N MI+    + N E +
Sbjct: 461 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIEN-GCTPNLVTYNIMIALQAKARNYENV 519

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K Y +  + G + D  T +I+ +  G  G  D+  +V   M +R + P    Y ++++ 
Sbjct: 520 VKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RRDWAPDEPVYGLLVDL 578

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +GKAG+++K   +++ M   G++PN  T  SL+SA+ K         +L+ +    ++  
Sbjct: 579 WGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPS 638

Query: 396 ----TPFFNCIISAYGQAG 410
               T   +C   A  Q G
Sbjct: 639 VQTYTLLLSCCTEAQAQMG 657



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 2/260 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ +I    +  +F +++K+L EMS    + + VTYN II  YG+A   +E   
Sbjct: 357 KHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVK 416

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M E+ G  PD  T  ++I  +  +G ++     Y     +G+  D  T + +    
Sbjct: 417 VFEEMQEA-GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCL 475

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+ G       +   M +    P +VTYNI+I    KA + E + + +K M+  G +P+ 
Sbjct: 476 GKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDK 535

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  ++      G + + +++  ++   D   D P +  ++  +G+AG+V+K    +  
Sbjct: 536 ITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYQA 594

Query: 422 MKERHCVPDNITFATMIQAY 441
           M +    P+  T  +++ A+
Sbjct: 595 MLQDGLQPNVPTCNSLLSAF 614



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G K D  T   +    G+A  +  ++ ++D M +    PTVVTYN +I  +G+A ++++ 
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F++M+  G +P+ +TYC+L+  ++KAG +     +  +++   +  DT  ++ +++ 
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNC 474

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
            G+ G +    +LF  M E  C P+ +T+  MI       +   A+N EN
Sbjct: 475 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMI------ALQAKARNYEN 518



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 2/236 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T+I   G+A++F  ++     M  +  C P + T N +I AYG +  +++
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAH-CKPTVVTYNRIIHAYGRANYLKE 413

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             K + E    G + D  T   L   + +AG  D    +   MQ+    P   TY+ ++ 
Sbjct: 414 AVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVN 473

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GK G +    + F +M   G  PN +TY  +++  +KA     V  + + ++ +    
Sbjct: 474 CLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRP 533

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           D   ++ ++   G  G +++   +F+ M+ R   PD   +  ++  +   G  + A
Sbjct: 534 DKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKA 588



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 95/197 (48%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D  T  +MI   G +     ++K  +E +    K  + T N +  +YGRA    +   V 
Sbjct: 359 DGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVF 418

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + MQ+  + P  VTY  +I+   KAG+++   + + +M+  G+ P++ TY ++V+   K 
Sbjct: 419 EEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKG 478

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +     +  ++  +    +   +N +I+   +A + E + +L+  M+     PD IT+
Sbjct: 479 GQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITY 538

Query: 435 ATMIQAYNALGMTEAAQ 451
           + +++     G  + A+
Sbjct: 539 SIVMEVLGHCGHLDEAE 555


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 187/445 (42%), Gaps = 79/445 (17%)

Query: 92  KKWQLALKIFGLLRQQ--QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + W + L++   +R +  ++ +  C T   ++   G+    ++A   F+ +  +G KP  
Sbjct: 287 RAWSMILELLDEMRSKGLEFDEFTCTT---VISACGREGILDEARRFFDDLKLNGYKPGT 343

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +++  +G++G+  EA + + +M+  ++C+PD  TY+ L+ +  +    D    ++ 
Sbjct: 344 ATYNSMLQVFGKAGVYTEALNILKEMED-NNCEPDAITYNELVAAYVRAGFHDEGAAVID 402

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------------- 250
            M+  G+  +A+TY T+I+ YGKA   ++    F  M E G                   
Sbjct: 403 TMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRS 462

Query: 251 ---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                          GC PD  T N+M++  G  G  + + +   E    G + D +T N
Sbjct: 463 RSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFN 522

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +YGR G    +  +   M    F P + TYN ++    + G+ +  E     M+ +
Sbjct: 523 TLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKK 582

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSI-------------------------------- 383
           G KPN  +Y  L+  YSKAG +  ++ +                                
Sbjct: 583 GFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGM 642

Query: 384 ---LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                Q++N+   LD    N ++S + +   +EK  E+   +      P+ +T+ ++I  
Sbjct: 643 ERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDL 702

Query: 441 YNALGMTEAAQNLENKMIAMKENSG 465
           Y  +G    A+    +M+   +NSG
Sbjct: 703 YARVGDCWKAE----EMLKDIQNSG 723



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 180/390 (46%), Gaps = 14/390 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ ++ +A K+F ++  ++ Y    +  T ++    +  + ++A  +FE M   GL P++
Sbjct: 214 RESQYSIASKLFDIIPVEE-YSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTL 272

Query: 150 DVYTALVSAYGQSGLLDEAFSTI----NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
             Y  ++  YG+ G    A+S I    ++M+S    + D +T + +I +C +    D   
Sbjct: 273 VTYNVMLDVYGKMG---RAWSMILELLDEMRS-KGLEFDEFTCTTVISACGREGILDEAR 328

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +   ++   G +    TYN+++  +GKA  + E  +    M E   C PD  T N +++A
Sbjct: 329 RFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEM-EDNNCEPDAITYNELVAA 387

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           Y  +G  ++     +     GV  +  T   +  +YG+AG  DK   V   M++    P 
Sbjct: 388 YVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPN 447

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYN V+   GK    E M +    MK  G  P+ IT+ ++++   + G    V  +LR
Sbjct: 448 VCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLR 507

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           +++N     D   FN +ISAYG+ G    + +++  M      P   T+  ++ A    G
Sbjct: 508 EMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRG 567

Query: 446 MTEAAQ----NLENKMIAMKENSGKKLIQC 471
             +AA+    ++  K     E S   L+ C
Sbjct: 568 NWKAAESVVLDMRKKGFKPNETSYSLLLHC 597



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q+   ++ MLG+  Q   AS LF+++  +     V   T ++ AY ++G    A      
Sbjct: 203 QSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEK 262

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           MK  +   P + TY++++    K  R + +I ++L EM   G+E    T  T+I   G+ 
Sbjct: 263 MKE-TGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGRE 321

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
              +E    F  + +  G  P   T NSM+  +G +G   +      E      + D  T
Sbjct: 322 GILDEARRFFDDL-KLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAIT 380

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  +Y RAG +D+  +V+D M  +   P  +TY  VI  +GKAG  +K  E F +MK
Sbjct: 381 YNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMK 440

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PN  TY +++    K      +  IL  ++ +    D   +N +++  G+ G  +
Sbjct: 441 ELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQK 500

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + ++   MK     PD  TF T+I AY   G       +  +M+A
Sbjct: 501 FVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVA 546



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 165/360 (45%), Gaps = 6/360 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ + G+  + +  S +   M + G +P  + +  L+SAYG+ G   +      +M
Sbjct: 485 TWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEM 544

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            + +   P + TY+ L+ +  +   +   E ++ +M   G + +  +Y+ ++  Y KA  
Sbjct: 545 VA-AGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGN 603

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              +E      +  G   P    L +++        ++ ME+ +++    G K D+  +N
Sbjct: 604 VRGLEK-VEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVIN 662

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   + R    +K   ++D +      P +VTYN +I+ + + G   K EE  K +++ 
Sbjct: 663 SMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNS 722

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+ ++Y +++  + K GL+ +   IL ++  + V      FN  +S Y   G   + 
Sbjct: 723 GISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEA 782

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 471
            E+   M E  C+P+ +T+  +I  Y      + A +  +K+    I+  + S KKL  C
Sbjct: 783 DEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKLASC 842


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 172/393 (43%), Gaps = 40/393 (10%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  YQ    TFT L+  L +  +  +A  L E M+  G +P +  Y A+++   + G  D
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 167 EAFSTINDM----------------------KSVSDC------------KPDVYTYSILI 192
            A + +N M                      + V D             +PDV+TYS LI
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
                + R+    ++L++M    I  + VT+N++ID + K  K  E E  F  M++    
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS-I 341

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-MYDKMR 311
            P+I T NS+I+ +     +++ ++ +          D+ T N L   + +A  + D M 
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME 401

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
              D M +R      VTY  +I  F +A   +  +  FK+M   G+ PN +TY +L+   
Sbjct: 402 LFRD-MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G + K   +   ++ S +  D   +N +     +AG VE   +LF ++  +   PD 
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDV 520

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           I + TMI  +   G+ E A  L    I MKE+ 
Sbjct: 521 IAYNTMISGFCKKGLKEEAYTL---FIKMKEDG 550



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 177/368 (48%), Gaps = 3/368 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ +  LAL +   + + +  +A    ++ ++  L K +  + A  LF  M + G++P V
Sbjct: 217 KRGEPDLALNLLNKMEKGKI-EADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y++L+S     G   +A   ++DM       P+V T++ LI +  K  +    EK+  
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM    I+ + VTYN++I+G+    + +E +  F+ MV S  C PD+ T N++I+ +  +
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV-SKDCLPDVVTYNTLINGFCKA 393

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +    + + + +  G+  +  T   L   + +A   D  + V   M      P ++TY
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +++   K G +EK    F+ ++   M+P+  TY  +     KAG +     +   +  
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  D   +N +IS + + G  E+   LF+ MKE   +PD+ T+ T+I+A+   G   A
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573

Query: 450 AQNLENKM 457
           +  L  +M
Sbjct: 574 SAELIKEM 581



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 38/370 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++ +   AL I G +  +  Y     T   L+       +  +A  L + M+  G +P  
Sbjct: 112 RRSQLSFALAILGKM-MKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 170

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +T LV    Q     EA + +  M  V  C+PD+ TY  +I    K    DL   +L 
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERM-VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLN 229

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    IE   V Y+T+ID   K +  ++  + F+ M ++ G  PD+FT +S+IS   N 
Sbjct: 230 KMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKGIRPDVFTYSSLISCLCNY 288

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G      +W                             D  R + D ++++   P VVT+
Sbjct: 289 G------RWS----------------------------DASRLLSDMLERKIN-PNVVTF 313

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+ F K G + + E+ F +M  R + PN +TY SL++ +     + +   I   + +
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            D + D   +N +I+ + +A  V    ELF  M  R  V + +T+ T+I  +      + 
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDN 433

Query: 450 AQNLENKMIA 459
           AQ +  +M++
Sbjct: 434 AQMVFKQMVS 443



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 118/299 (39%), Gaps = 37/299 (12%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           LDEA     +M   S   P +  +S L+ +  K  +FDL+     +M  LG+  +  TYN
Sbjct: 46  LDEAVDLFGEMVK-SRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+   +  +     +    M++ G   P I TLNS+++ + +   I +     ++   
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           MG +                                   P  VT+  ++    +     +
Sbjct: 164 MGYQ-----------------------------------PDTVTFTTLVHGLFQHNKASE 188

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
                ++M  +G +P+ +TY ++++   K G      ++L ++E   +  D   ++ +I 
Sbjct: 189 AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           +  +   V+    LF  M  +   PD  T++++I      G    A  L + M+  K N
Sbjct: 249 SLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKIN 307



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 72/321 (22%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W  A ++   + +++       TF  L+    K  +  +A  LF+ M+   + P++  Y
Sbjct: 290 RWSDASRLLSDMLERKI-NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS------------------ 194
            +L++ +     LDEA      M S  DC PDV TY+ LI                    
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMS 407

Query: 195 -----------CTKFHRF------DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                       T  H F      D  + +  +M   G+  + +TYNT++DG  K  K E
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 467

Query: 238 EMESSF------------------------SAMVESG----------GCHPDIFTLNSMI 263
           +    F                        +  VE G          G  PD+   N+MI
Sbjct: 468 KAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S +   G  E+    + +    G   D  T N L +++ R G       ++  M+   F 
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587

Query: 324 PTVVTYNIVIETFGKAGHIEK 344
               TY +V +     G ++K
Sbjct: 588 GDASTYGLVTDML-HDGRLDK 607


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 166/349 (47%), Gaps = 24/349 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+TK++  L + K+ ++A LLF+ M   G+ P V  YT L+ ++ ++GL+++A S  ++M
Sbjct: 454 TYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEM 513

Query: 176 KSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           +S + C P+V TY+ L+ +  K    +   D+  +++ +  Y     +A+TY+ +IDG  
Sbjct: 514 RS-AGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYP----NAITYSALIDGLC 568

Query: 232 KAKKFEEMESSFSAMV---------------ESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           KA + ++    ++ ++               ++    P++ T  ++++    +  +    
Sbjct: 569 KAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAH 628

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
              +     G + +    + L   + + G  D  + V   M K  + P+V TY  +I+  
Sbjct: 629 DLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRM 688

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K G ++   +   +M      PN +TY ++V    K G   K  ++L  +E      + 
Sbjct: 689 FKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNV 748

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             +  +I   G+AG V+   ELF+ MK + C P+ +T+  +I    A G
Sbjct: 749 VTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAG 797



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 154/380 (40%), Gaps = 58/380 (15%)

Query: 102 GLLRQ-QQWYQ----ARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GL+ Q Q W+     A C     T+T L+    K KQ  QA+ +F  M+ D   P+   Y
Sbjct: 501 GLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITY 560

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSD---------------CKPDVYTYSILIKSCTK 197
           +AL+    ++G + +A      +   SD                 P+V TY  L+    K
Sbjct: 561 SALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCK 620

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             +      +L  M   G E + + Y+ ++DG+ K  + +  +  F  M + G   P + 
Sbjct: 621 AQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGY-LPSVH 679

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I      G ++   K  ++        ++ T   +     + G  +K  +++  M
Sbjct: 680 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLM 739

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL- 376
           +K+   P VVTY  +I+  GKAG ++   E F +MK +G  PN +TY  L++    AGL 
Sbjct: 740 EKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLL 799

Query: 377 --------------------------------IMKVDSILRQVENSDVILDTPFFNCIIS 404
                                            +    +L ++E+ D     P +  +I 
Sbjct: 800 DDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLID 859

Query: 405 AYGQAGDVEKMGELFLTMKE 424
           ++ +AG +E   EL   M E
Sbjct: 860 SFSKAGRLETALELHKEMME 879



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 34/369 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K KQ      +  +M+++G  PS  ++ +LV  Y  +     A+   N M
Sbjct: 308 TYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRM 367

Query: 176 KSVSDCKPDVYTYSILIKS-CTKFHR-----FDLIEKILAEMSYLGIECSAVTYNT---- 225
            +   C P    Y+I I S C +         DL EK+  EM  L   C     NT    
Sbjct: 368 NTCG-CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEM--LVASCVLNKINTANFA 424

Query: 226 -IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
             + G GK   FE+       M+  G   PD  T   +I+    +  ++K    + E   
Sbjct: 425 RCLCGVGK---FEKAFQIVKEMMRKGFV-PDASTYTKVITFLCQAKRVDKAFLLFQEMKK 480

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           +GV  D+ T  IL  S+ +AG+ ++ +S  D M+     P VVTY  ++  + K+  + +
Sbjct: 481 VGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQ 540

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------ 398
             + F +M      PN+ITY +L+    KAG I K   +  ++  +   +++ F      
Sbjct: 541 ANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKD 600

Query: 399 ----------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
                     +  +++   +A  V    +L   M    C P+ I +  ++  +  +G  +
Sbjct: 601 TDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEID 660

Query: 449 AAQNLENKM 457
           +AQ +  +M
Sbjct: 661 SAQEVFLRM 669



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 152/344 (44%), Gaps = 11/344 (3%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           CK+      L +++  +  K    + T ++S   ++ L +EA S ++ M+  S   P+V 
Sbjct: 250 CKEGRWGDAL-DLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYI-PNVV 307

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY  L+    K  +    ++I+  M   G   S   +N+++  Y  A+ +      F+ M
Sbjct: 308 TYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRM 367

Query: 247 VESGGCHPDIFTLNSMISA------YGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 299
             + GC P     N  I +        N   ++  EK Y E  +   V   I T N   +
Sbjct: 368 -NTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTAN-FAR 425

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
                G ++K   ++  M ++ F P   TY  VI    +A  ++K    F++MK  G+ P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +  TY  L+ ++ KAGLI +  S   ++ ++    +   +  ++ AY ++  + +  ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
             M    C P+ IT++ +I      G  + A  +  K+I   +N
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDN 589



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 16/265 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T + ++ +LG  + PE     F       G K +   Y AL    G     D A +    
Sbjct: 100 TDSVVVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVLG---FEDPARTAERL 156

Query: 175 MKSVSDCKPDVY--TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++ + +   DV     ++L++ C     +    + L  +   G   SAVTYN ++     
Sbjct: 157 LREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLAS 216

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKA 289
           A + E        M  SG C  D  T+ S   A    G      +W +  +L+     K 
Sbjct: 217 AGQVEMAFRVQKEMSASGFCM-DRSTVGSFAQALCKEG------RWGDALDLLEREDFKL 269

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D      +      A ++++  S +  M+   + P VVTY  ++  F K   +   +   
Sbjct: 270 DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRII 329

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKA 374
             M   G  P+   + SLV  Y  A
Sbjct: 330 NMMMTEGCNPSPSLFNSLVHTYCNA 354



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           + LN+L +     G++ +    +  ++   + P+ VTYN +++    AG +E      K+
Sbjct: 170 RLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKE 229

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G   +  T  S   A  K G   +    L  +E  D  LDT     +IS   +A  
Sbjct: 230 MSASGFCMDRSTVGSFAQALCKEG---RWGDALDLLEREDFKLDTVLCTQMISGLMEASL 286

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAY 441
             +       M+    +P+ +T+ T++  +
Sbjct: 287 FNEAMSFLHRMRCNSYIPNVVTYRTLLTGF 316


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 48/388 (12%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ +LGK K   +A  +F  +     KP+ + Y +++    Q G  ++     N+M 
Sbjct: 162 LSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMC 221

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFD--------------------------------LI 204
           +  DC PD  TYS LI +  K  R D                                 +
Sbjct: 222 NEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRV 281

Query: 205 EKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           EK L    EM   G   +  TY  +I G GKA K EE  S F  M++  GC PD+  +N+
Sbjct: 282 EKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKE-GCKPDVVLINN 340

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF----- 316
           +I+  G +G +    K + E   +    ++ T N + K    A    K R+   F     
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK----ALFESKARASEAFLWYEK 396

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++    P+  TY+I+I+ F K   +EK     ++M  +G  P    YCSL++A  KA  
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
               + + +++  +        +  +I   G+ G + +  +LF  MK+  C PD   +  
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++     +GMT+ A +L   +  M+EN 
Sbjct: 517 LMSGMVRVGMTDEAHSL---LRTMEENG 541



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 164/378 (43%), Gaps = 38/378 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK  + + A  LF+ M  +GL P+  +YT ++  Y + G +++A   + +M
Sbjct: 232 TYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM 291

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C   VYTY+ LIK   K  + +    I   M   G +   V  N +I+  GKA +
Sbjct: 292 KE-KGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGR 350

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +    F  M ES  C P++ T N++I A + +     +   WY +    GV     T 
Sbjct: 351 LADAIKLFEEM-ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTY 409

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFP------------------------------ 324
           +IL   + +    +K   +++ M ++ F P                              
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRE 469

Query: 325 -----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                +   Y ++I+  GK G + +  + F +MK  G  P+   Y +L+S   + G+  +
Sbjct: 470 NCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDE 529

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             S+LR +E +    D    N I++ + + G  +   E+F  MK     PD +++ T++ 
Sbjct: 530 AHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLG 589

Query: 440 AYNALGMTEAAQNLENKM 457
             +  GM E A  L  +M
Sbjct: 590 CLSRAGMFEEAAKLMKEM 607



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 38/329 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  +GK  + E+A  +F  ML +G KP V +   L++  G++G L +A     +M
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
           +S+  C P+V                                    +TYSILI    K +
Sbjct: 362 ESLQ-CTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +    +L EM   G       Y ++I+  GKAK++E     F  + E+ G +      
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG-YSSARVY 479

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             MI   G  G + +    +NE   +G   D+   N L     R GM D+  S++  M++
Sbjct: 480 AVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEE 539

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + ++NI++  F + G  +   E F +MK+  +KP+ ++Y +++   S+AG+  +
Sbjct: 540 NGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEE 599

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +++++ +     D   ++ I+ A G+
Sbjct: 600 AAKLMKEMNSKGFEYDLITYSSILEAVGK 628



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 138/309 (44%), Gaps = 6/309 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y AL+    ++G+L E + TI +M   S C       S ++K   K    +    I  ++
Sbjct: 127 YMALIHCLDEAGMLGEMWKTIQEMVR-STCVIGPADLSEIVKVLGKAKMVNKALSIFYQI 185

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                + ++ TYN++I    +    E++   ++ M   G C PD  T +++I+A+G  G 
Sbjct: 186 KGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGR 245

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +     ++E    G+    +    +   Y + G  +K   ++  M+++    TV TY  
Sbjct: 246 DDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTE 305

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+  GKAG +E+    F  M   G KP+ +   +L++   KAG +     +  ++E+  
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFL---TMKERHCVPDNITFATMIQAYNALGMTE 448
              +   +N +I A  ++    +  E FL    MKE   VP + T++ +I  +      E
Sbjct: 366 CTPNVVTYNTVIKALFESK--ARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423

Query: 449 AAQNLENKM 457
            A  L  +M
Sbjct: 424 KALLLLEEM 432



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 107/278 (38%), Gaps = 35/278 (12%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D  TY  LI    +      + K + EM            + I+   GKAK   +  S F
Sbjct: 123 DSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF 182

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
              ++   C P   T NSMI      G+ EK+ + YNE   M  + D             
Sbjct: 183 Y-QIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNE---MCNEGDC------------ 226

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
                               P  VTY+ +I  FGK G  +     F +MK  G+ P +  
Sbjct: 227 -------------------LPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKI 267

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +++  Y K G + K   ++++++     L    +  +I   G+AG VE+   +F+ M 
Sbjct: 268 YTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNML 327

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +  C PD +    +I      G    A  L  +M +++
Sbjct: 328 KEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K R  + +S TY +L+    +AG++ ++   ++++  S  ++     + I+   G+A  V
Sbjct: 116 KRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMV 175

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            K   +F  +K R C P + T+ +MI      G  E    L N+M
Sbjct: 176 NKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEM 220


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 158/351 (45%), Gaps = 4/351 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Y A   TFT   +++G CK    + A  +F+ M+ DG  P+   Y+AL++     G L+E
Sbjct: 231 YGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEE 290

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A   + +M      +P V+ Y+I I S     R     K+L +M   G   +  TY  +I
Sbjct: 291 AMDMLEEMID-KGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALI 349

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            G  +  KFE     +  M+ + G  P   T +++I+     G  E     +        
Sbjct: 350 SGLSRDGKFEVAIGVYHKML-ADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDS 408

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             + +T N++ K +   G   K  ++ D M K    P V+TYNI+I  + K G++     
Sbjct: 409 LPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMR 468

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             + MK  G+K ++ TY +L+S +S+ G +    S+  ++    +  +   +N II+ Y 
Sbjct: 469 LLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYL 528

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
               V+    LF  M E   VP + T+  MI  ++       A+N   KM+
Sbjct: 529 TVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMV 579



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 158/377 (41%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F+ L++ LGK         ++  ML+ G++P++  + A++      G + EA   +  +
Sbjct: 169 SFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHI 228

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C PD +TY+ LI    K    DL  ++   M   G + ++VTY+ +I+G     +
Sbjct: 229 FHYGAC-PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGR 287

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            EE       M++ G                                  GC P++ T  +
Sbjct: 288 LEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTA 347

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS     G  E     Y++    G+     T + L       G ++   ++ ++M    
Sbjct: 348 LISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHD 407

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P   TYN++I+ F   G+I+K    F +M   G  PN ITY  ++  Y K G +    
Sbjct: 408 SLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAM 467

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L  ++ + + LDT  +  +IS + + G +E    LF  M E    P+ +T+  +I  Y
Sbjct: 468 RLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGY 527

Query: 442 NALGMTEAAQNLENKMI 458
             +   + A  L  KM+
Sbjct: 528 LTVAKVDDALALFWKMV 544



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 10/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L    + E+A  + E M+  G++P+V  YT  + +   +G   EA   +  M
Sbjct: 274 TYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKM 333

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C P+V TY+ LI   ++  +F++   +  +M   G+  +AVTY+ +I+      +
Sbjct: 334 KK-RGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR 392

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FE   + F  M+ S    P+  T N +I  + + G I+K    +++    G   ++ T N
Sbjct: 393 FETALTIFEWML-SHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYN 451

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+   Y + G  +    +++ M+         TY  +I  F + G +E     F +M   
Sbjct: 452 IIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEH 511

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSIL----RQVENSDVILDTPFFNCIISAYGQAGD 411
           G+ PN +TY ++++ Y     + KVD  L    + VE+ +V   +  +N +IS + +   
Sbjct: 512 GISPNVVTYNAIINGYLT---VAKVDDALALFWKMVESGNVP-SSGTYNMMISGFSKTNR 567

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + +       M ++  +P+ IT+ + I      G T  A  + ++M
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEM 613



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 165/379 (43%), Gaps = 17/379 (4%)

Query: 91  QKKWQLALKIFGLLRQQQW---YQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGL 145
           + +++ AL IF      +W   + +   T T  +++ G C     ++A+ +F+ ML  G 
Sbjct: 390 EGRFETALTIF------EWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGP 443

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
            P+V  Y  ++  Y + G ++ A   +  MK  +  K D +TY+ LI   ++  + +   
Sbjct: 444 SPNVITYNIIIHIYFKQGYMNNAMRLLEMMKG-NGLKLDTWTYANLISGFSRGGKLEHAF 502

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +  EM   GI  + VTYN II+GY    K ++  + F  MVESG   P   T N MIS 
Sbjct: 503 SLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNV-PSSGTYNMMISG 561

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +  +  I + E +  +    G+  ++ T         + G       +   M+KR +FP 
Sbjct: 562 FSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPN 621

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           + TY+ +I+   + G  E  E    ++   G +PN  TY +LV      G   + D ++ 
Sbjct: 622 LCTYSSLIDGLCQEGQAEDAE----RLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVE 677

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            ++   +      +  ++    +  +VE   ++F +M      P    +  +I A     
Sbjct: 678 SMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKAN 737

Query: 446 MTEAAQNLENKMIAMKENS 464
             + AQ +   M+    NS
Sbjct: 738 FRQKAQCMFQTMLKKHWNS 756



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 133/312 (42%), Gaps = 1/312 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+ +V   ++ +    G +      ++++ +  D    +Y++S L+    KF    L   
Sbjct: 129 PADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRD 188

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   GI  +  T+N +I       K +E E     +   G C PD FT  S+I  +
Sbjct: 189 VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGAC-PDTFTYTSLIIGH 247

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +GN++   + ++     G   +  T + L       G  ++   +++ M  +   PTV
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
             Y I I +   AG   +  +   KMK RG  PN  TY +L+S  S+ G       +  +
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +    ++     ++ +I+     G  E    +F  M     +P+  T+  +I+ + ++G 
Sbjct: 368 MLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGY 427

Query: 447 TEAAQNLENKMI 458
            + A  + ++M+
Sbjct: 428 IQKATAIFDQML 439



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 112/271 (41%), Gaps = 2/271 (0%)

Query: 190 ILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++IKSC        + ++L+E+ +      +  +++T++   GK          +  M+ 
Sbjct: 136 LMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLN 195

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           SG   P++FT N+MI    N G +++ E         G   D  T   L   + + G  D
Sbjct: 196 SG-IRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
               + D M K    P  VTY+ +I      G +E+  +  ++M  +G++P    Y   +
Sbjct: 255 LAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
            +   AG   +   +L +++      +   +  +IS   + G  E    ++  M     V
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLV 374

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           P  +T++ +I      G  E A  +   M++
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLS 405


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 174/418 (41%), Gaps = 66/418 (15%)

Query: 102 GLLRQQQWY-----QARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GL+ Q QW         C     T+T L+    K KQ  QA+ +F  M+  G +P+   Y
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSD---------CK------PDVYTYSILIKSCTK 197
            ALV    ++G + +AF     +   SD         C+      P+V TY  L+    K
Sbjct: 397 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 456

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+ D   ++L  M   G E + + Y+ +IDG+ KA K +  +  F  M + G   P + 
Sbjct: 457 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY-LPSVH 515

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I      G ++   K  ++        ++ T   +     R G  +K   ++  M
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++   P VVTY  +I+  GKAG I+   + F +M  +G  PN +TY  L++    AGL+
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 635

Query: 378 MKVD---------------------------------SILRQVENSDVILDTPFFNCIIS 404
            K                                    IL ++E+   +   P +  +I 
Sbjct: 636 DKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLID 695

Query: 405 AYGQAGDVEKMGELFLTMKERHCVP-----DNITFATMIQAYNALGMTEAAQNLENKM 457
            + +AG +E   EL   M E   VP     DN  +A++IQA       E A  L ++M
Sbjct: 696 CFSKAGRLEIAMELHKEMME---VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 750



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 168/376 (44%), Gaps = 18/376 (4%)

Query: 99  KIFGLLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           K F L+++  ++ +     T++K++  L    + E+A LLF+ M   G+ P V  YT L+
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            ++ ++GL+++A     +M+SV  C P V TY+ LI +  K  +      I   M   G 
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVG-CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 389

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG---------CH------PDIFTLNS 261
             + VTY  ++DG  KA    +    ++ ++ +           C       P++ T  +
Sbjct: 390 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 449

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++     +  ++   +  +     G + +    + L   + +AG  D  + V   M K  
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+V TY  +I+   K G ++   +   +M      PN +TY +++    + G   K  
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L  +E      +   +  +I   G+AG ++   +LF  M  + C P+ +T+  +I   
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629

Query: 442 NALGMTEAAQNLENKM 457
            A G+ + A+ L  +M
Sbjct: 630 CAAGLLDKARLLLGEM 645



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 40/357 (11%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG CK+      +  +M+++G  P+  ++ +LV +Y        A+  +N M +   C P
Sbjct: 158 LGWCKR------IINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG-CPP 210

Query: 184 DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 232
               Y+I I S     +       DL EKI  EM  L   C     +   +   + G GK
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM--LAANCVLNKVNVANFARCLCGVGK 268

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
              F++       M+  G   PD  T + +I+   ++  +EK    + E  ++GV  D+ 
Sbjct: 269 ---FDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 324

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T  IL  S+ +AG+ ++ + + + M+     PTVVTY  +I  + KA  + +  + F +M
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC---------- 401
              G +PN +TY +LV    KAG I K   +  ++  +    D+ F F C          
Sbjct: 385 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 444

Query: 402 -----IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                ++    +A  V+   EL   M    C P++I +  +I  +   G  ++AQ +
Sbjct: 445 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 13/346 (3%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           CK+   A  L +++  +  K    + T ++S   ++   DEA S ++ M+  S C P+V 
Sbjct: 86  CKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVV 143

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y   K +       + M
Sbjct: 144 TYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRM 203

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNI------EKMEKWYNEFNLMGVKADIQTLNI--LT 298
             + GC P     N  I +      +      +  EK Y E  ++     +  +N+    
Sbjct: 204 T-TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGE--MLAANCVLNKVNVANFA 260

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           +     G +DK   ++  M ++ F P   TY+ VI     A  +EK    F++MK  G+ 
Sbjct: 261 RCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 320

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY  L+ ++ KAGLI +   +  ++ +         +  +I AY +A  V +  ++
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 380

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           F  M +  C P+++T+  ++      G    A  +  K+I   +++
Sbjct: 381 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 426



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 44/263 (16%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVM 140
           +D   K  +  LA+K+       Q  +  C     T+T ++  L +  + E+A  L  +M
Sbjct: 521 IDRMFKDGRLDLAMKVL-----SQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G  P+V  YTAL+   G++G +D +      M S   C P+  TY +LI        
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM-SRKGCSPNYVTYRVLINHLCAAGL 634

Query: 201 FDLIEKILAEMS------YL-GIECS--------------------------AVTYNTII 227
            D    +L EM       YL G  C+                          A  Y  +I
Sbjct: 635 LDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLI 694

Query: 228 DGYGKAKKFE-EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           D + KA + E  ME     M        D     S+I A   +  +E+  + Y+E    G
Sbjct: 695 DCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRG 754

Query: 287 VKADIQTLNILTKSYGRAGMYDK 309
              ++     L K       +D+
Sbjct: 755 FVPELSVFVCLIKGLVEVKKWDE 777



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P+ VTYN +++    AG ++      K+M   G   +  T      A  K G   +    
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWADA 94

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           L  +E  D  LDT     +IS   +A   ++       M+   C+P+ +T+ T++  +
Sbjct: 95  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGF 152


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 37/345 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  +   M+ +G+ P    Y +++  Y  SG   EA   +  M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S    +PDV TYS+L+    K  R     KI   M+  G++    TY T++ GY     
Sbjct: 293 RS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             EM      MV +G  HPD +  + +I AY N G ++                  Q + 
Sbjct: 352 LVEMHGLLDLMVRNG-IHPDHYVFSILICAYANQGKVD------------------QAML 392

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           + +K                 M+++   P  VTY  VI    K+G +E    YF++M   
Sbjct: 393 VFSK-----------------MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 435

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P +I Y SL+          + + ++ ++ +  + L+T FFN II ++ + G V + 
Sbjct: 436 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 495

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +LF  M      P+ IT+ T+I  Y   G  + A  L + M+++
Sbjct: 496 EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 2/309 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ LM  L K  +  +A  +F+ M   GLKP +  Y  L+  Y   G L E    + D+
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DL 361

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD Y +SILI +     + D    + ++M   G+  +AVTY  +I    K+ +
Sbjct: 362 MVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M++ G   P     NS+I         E+ E+   E    G+  +    N
Sbjct: 422 VEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 480

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  S+ + G   +   + + M +    P V+TYN +I  +  AG +++  +    M   
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN++TY +L++ Y K   +     + +++E+S V  D   +N I+    Q       
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600

Query: 416 GELFLTMKE 424
            EL++ + E
Sbjct: 601 KELYVRITE 609



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 159/343 (46%), Gaps = 7/343 (2%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 179 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             C P+V++Y+IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  S++  M++  G  PD+ T NS+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 212 SDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   Y  +G   +    +  M+     P VVTY+++++   K G   +  + F  M  R
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP   TY +L+  Y+  G ++++  +L  +  + +  D   F+ +I AY   G V++ 
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQA 390

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M+++   P+ +T+  +I      G  E A     +MI
Sbjct: 391 MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 36/371 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
            Q K   A+ +F  +RQQ        T+  ++ +L K  + E A L FE M+ +GL P  
Sbjct: 383 NQGKVDQAMLVFSKMRQQGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+         + A   I +M     C                            
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KP+V TY+ LI       + D   K+L+ M  +G++ + VTY+T+I+GY K  +
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 562 MEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     +  + D    +   +          T+NI+I+   K G  ++ ++ F      
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN  TY  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + 
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740

Query: 416 GELFLTMKERH 426
           G     + E+H
Sbjct: 741 GTYLSMIDEKH 751



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHR 200
           +D + P +  Y  L+    ++G LD  F+ + ++      + D   ++ L+K  C     
Sbjct: 80  ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK-KGFRVDAIAFTPLLKGLCADKRT 138

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFT 258
            D ++ +L  M+ LG   +  +YN ++ G     + +E       M +   GG  PD+ +
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
             ++I+ +   G+ +K    Y+E    G+  D+ T N +  +  +A   DK   V++ M 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           K    P  +TYN ++  +  +G  ++   + KKM+  G++P+ +TY  L+    K G  M
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   I   +    +  +   +  ++  Y   G + +M  L   M      PD+  F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 439 QAYNALGMTEAAQNLENKM 457
            AY   G  + A  + +KM
Sbjct: 379 CAYANQGKVDQAMLVFSKM 397



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 157/352 (44%), Gaps = 11/352 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+       + +QA L+F  M   GL P+   Y A++    +SG +++A      M
Sbjct: 373 VFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI      ++++  E+++ EM   GI  + + +N+IID + K  +
Sbjct: 433 ID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   P++ T N++I+ Y  +G +++  K  +    +G+K +  T +
Sbjct: 492 VIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYS 550

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +    +    +   M+     P ++TYNI+++   +       +E + ++   
Sbjct: 551 TLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITES 610

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  L+  +N    D+ L+   FN +I A  + G  
Sbjct: 611 GTQIELSTYNIILHGLCKNKL---TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++  +LF+       VP+  T+  M +     G+ E    L+   ++M++N 
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDNG 716



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 13/300 (4%)

Query: 168 AFSTINDMK--SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           A S  N M      +  PD+ TY ILI  C +  R DL    L  +   G    A+ +  
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 226 IIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           ++ G    K+  + M+     M E G C P++F+ N ++    +     + ++     ++
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELG-CIPNVFSYNILLKGLCDE---NRSQEALELLHM 183

Query: 285 M------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           M      G   D+ +   +   + + G  DK  S    M  R   P VVTYN +I    K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           A  ++K  E    M   G+ P+ +TY S++  Y  +G   +    L+++ +  V  D   
Sbjct: 244 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT 303

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++ ++    + G   +  ++F +M +R   P+  T+ T++Q Y   G       L + M+
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 150/348 (43%), Gaps = 37/348 (10%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+     +  ++  L K KQ + A  L   M  DG++P    Y +L+S    SG  D+A 
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDAT 241

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             ++ M    +  PDV+T++ LI +C K  R    E++  EM    ++   VTY+ +I G
Sbjct: 242 RMVSCMTK-REIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                + +E E  F  MV S GC PD+ T + +I+ Y  S  +E   K + E        
Sbjct: 301 LCMYSRLDEAEQMFGFMV-SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE-------- 351

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                                      M +R      VTY ++I+ + +AG +   EE F
Sbjct: 352 ---------------------------MSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIF 384

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           K M   G+ PN ITY  L+      G I K   IL  ++ S +  D   +N II    +A
Sbjct: 385 KWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKA 444

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G+V    +L+ ++  +   PD  T+  M+      G+   A  L  KM
Sbjct: 445 GEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKM 492



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 2/312 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PS+  ++ L+SA  +    D        M+ +     ++ T +IL+    +  +  L   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG-IPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            L +M  LG E   VT+ ++++G+ +  +  +    F  MVE G   P++   N++I   
Sbjct: 138 FLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGY-EPNVVIYNTIIDGL 196

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             S  ++      N   + G++ D  T N L      +G +D    ++  M KR  +P V
Sbjct: 197 CKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDV 256

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T+N +I+   K G I + EE +++M  R + P+ +TY  L+        + + + +   
Sbjct: 257 FTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGF 316

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +     D   ++ +I+ Y ++  VE   +LF  M +R  V + +T+  +IQ Y   G 
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGK 376

Query: 447 TEAAQNLENKMI 458
              A+ +   M+
Sbjct: 377 LNVAEEIFKWMV 388



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W  A ++   + +++ Y     TF  L+    K  +  +A  L+E M+   L P +  Y
Sbjct: 236 RWDDATRMVSCMTKREIY-PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTY 294

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           + L+        LDEA      M S   C PDV TYSILI    K  + +   K+  EMS
Sbjct: 295 SLLIYGLCMYSRLDEAEQMFGFMVS-KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+  + VTY  +I GY +A K    E  F  MV  G   P+I T N ++    ++G I
Sbjct: 354 QRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG-VPPNIITYNVLLHGLCDNGKI 412

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           EK      +    G+ ADI T NI+ +   +AG       +   +  +   P + TY  +
Sbjct: 413 EKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAM 472

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           +    K G   + +  F+KMK  G+ PN
Sbjct: 473 MLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 118/277 (42%), Gaps = 36/277 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  +S L+ + +K  ++D++  +  +M  LGI  +  T N +++ + +  +     S 
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M++ G   PDI T  S+++ +     I                            Y 
Sbjct: 139 LGKMMKLGH-EPDIVTFGSLLNGFCRGDRI----------------------------YD 169

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
              M+D+M  +        + P VV YN +I+   K+  ++   +   +M+  G++P+++
Sbjct: 170 ALYMFDRMVEM-------GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAV 222

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL+S    +G       ++  +   ++  D   FN +I A  + G + +  EL+  M
Sbjct: 223 TYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM 282

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             R   PD +T++ +I         + A+ +   M++
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVS 319


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 182/398 (45%), Gaps = 37/398 (9%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           +L  F      + + +  + + +++ + GK +  + A  L ++M S G++ +V  ++ LV
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLV 185

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKF-------------HRF- 201
             Y ++GL  EA    N M+    CKPD  ++SI+I S C K              H+F 
Sbjct: 186 RRYVRAGLAAEAVHAFNRMEDYG-CKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFE 244

Query: 202 -DLI------------------EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D+I                  E++ ++M   G++ +  TY+ +ID   +  +       
Sbjct: 245 PDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDV 304

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           FS M+++G C P+  T NS++  +  +G  EK+ + YN+   +G  AD  + N L +S+ 
Sbjct: 305 FSEMIDAG-CDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHC 363

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +    D+   V+D M K+   P   T+N +     +   +      + KMK     PN++
Sbjct: 364 KDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTL 423

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L+  ++ +  I  V  + ++++ S+V  +   +  +I  + + G       L   M
Sbjct: 424 TYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEM 483

Query: 423 KERHCVPDNIT-FATMIQAYNALGMTEAAQNLENKMIA 459
            E  C+  N++ + T+++     G  +  + L  KM+A
Sbjct: 484 VEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVA 521



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 2/274 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ +I    K   FDL   ++  M   G+  +  T++ ++  Y +A    E   +F+ M 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRM- 204

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E  GC PD  + + +IS+        + E +++       + D+     L   + RAG  
Sbjct: 205 EDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK-HKFEPDVIVYTSLVHGWCRAGDI 263

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            K   V   M++    P V TY+IVI++  + G I +  + F +M   G  PN++T+ SL
Sbjct: 264 AKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 323

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +  + KAG   KV  +  Q++      DT  +N +I ++ +  ++++  ++  TM ++  
Sbjct: 324 MRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGV 383

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            P+  TF ++      L     A  +  KM  +K
Sbjct: 384 APNASTFNSIFGCIAELHDVNGAHRMYAKMKELK 417



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 3/242 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L +C Q  +A  +F  M+  G  P+   + +L+  + ++G  ++     N M
Sbjct: 284 TYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQM 343

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K +  C  D  +Y+ LI+S  K    D   K+L  M   G+  +A T+N+I     +   
Sbjct: 344 KRLG-CAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHD 402

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                  ++ M E   C P+  T N ++  + +S +I+ + K   E +   V+ ++ T  
Sbjct: 403 VNGAHRMYAKMKELK-CMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYR 461

Query: 296 ILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           IL   +   G ++   ++M + ++++   P +  Y  V+E    AG ++K EE  +KM  
Sbjct: 462 ILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVA 521

Query: 355 RG 356
           RG
Sbjct: 522 RG 523


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 37/379 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L +    E+   +   M   G  P + +Y  ++    + G L  A   +N M
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRM 323

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP+V  Y+ L+K      R++  E++LAEM         VT+N ++D + +   
Sbjct: 324 PSYG-LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGL 382

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM-------------------- 275
            + +      M+  G C PD+ T  ++I+ +   G I++                     
Sbjct: 383 VDRVIELLEQMLVHG-CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYT 441

Query: 276 ---------EKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                    E+W +  +LM      G   +  T N L     + G+ ++   ++  M   
Sbjct: 442 IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN 501

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +++Y+ VI+  GKAG  ++  E    M ++GM PN+I Y S+ SA S+ G I KV
Sbjct: 502 GCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKV 561

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   ++++ +  D   +N +IS+  + G+ E+  E    M    CVP+  T+  +I+ 
Sbjct: 562 IQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 621

Query: 441 YNALGMTEAAQNLENKMIA 459
             + G  + AQ +  ++ +
Sbjct: 622 LASEGFVKEAQEMLTELCS 640



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 37/363 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
             A  + E + + G    V     +++A    G +D+A   + D+ S   C+PDV +Y+ 
Sbjct: 174 RSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFG-CEPDVVSYNA 232

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++K      R+  +++++ EM  +    + VT+NT+I    +   FE +    + M E G
Sbjct: 233 VLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHG 292

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ------------------ 292
            C PDI    ++I      G+++   +  N     G+K ++                   
Sbjct: 293 -CTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEET 351

Query: 293 -----------------TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                            T NIL   + + G+ D++  +++ M      P V+TY  VI  
Sbjct: 352 EELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVING 411

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           F K G I++     K M   G KPN+I+Y  ++     A   +  + ++ Q+      L+
Sbjct: 412 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLN 471

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FN +I+   + G VE+  EL   M    C PD I+++T+I      G T+ A  L N
Sbjct: 472 PITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLN 531

Query: 456 KMI 458
            M+
Sbjct: 532 VMV 534



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 139/315 (44%), Gaps = 2/315 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+   Y  +V A    G + +A + +++M     C P    Y +++++  +   F   
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPR-RGCAPIPPMYHVILEAACRGGGFRSA 176

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L ++   G        N +++        ++       +  S GC PD+ + N+++ 
Sbjct: 177 VRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDL-PSFGCEPDVVSYNAVLK 235

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               +     +++   E   M    +I T N L     R G+++++  V+  M +    P
Sbjct: 236 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTP 295

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  Y  +I+   K GH++   E   +M   G+KPN + Y +L+     A    + + +L
Sbjct: 296 DIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 355

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ + D  LD   FN ++  + Q G V+++ EL   M    C+PD IT+ T+I  +   
Sbjct: 356 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKE 415

Query: 445 GMTEAAQNLENKMIA 459
           G+ + A  L   M A
Sbjct: 416 GLIDEAVMLLKSMTA 430



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 4/235 (1%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           YN ++ GY +A + E      +A+       P+ +T   ++ A    G I       +E 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVP----PNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G        +++ ++  R G +     V++ +  R     V   N+V+      G +
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           +K     + +   G +P+ ++Y +++     A     V  ++ ++       +   FN +
Sbjct: 209 DKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           IS   + G  E++ E+   M E  C PD   +AT+I      G  + A  + N+M
Sbjct: 269 ISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRM 323



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +   Y RAG  +  R +   +      P   TY  V+      G I        +M  
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG  P    Y  ++ A  + G       +L  +      LD    N +++A    G V+K
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDK 210

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              L   +    C PD +++  +++           Q L  +M+ M
Sbjct: 211 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256


>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 155/347 (44%), Gaps = 7/347 (2%)

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
           R Q  Y   C    + ++   K +  E+A+ + ++M+  G  P +  Y  LV    + GL
Sbjct: 68  RNQIPYFPSCINLIRGLI---KLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGL 124

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L  A   +++M S+S C PD  TY+ +++       FD       +    G     +TY 
Sbjct: 125 LKTAIELLDEM-SLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYT 183

Query: 225 TIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
            +I+   K     + ME      +E  GC+PDI T NS+++     G  E          
Sbjct: 184 VLIELVCKHCGTVQAMEVLEDMAIE--GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLL 241

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G+  +  T N L  S    G +D++  ++  M      PTVVTYNI+I    K G ++
Sbjct: 242 SHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLD 301

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +   +F +M      P+ ITY +L++A  K G++ +   +L  + ++        +N +I
Sbjct: 302 RAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVI 361

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               + G +EK  EL+  M ER   PD+IT  T+      L + E A
Sbjct: 362 DGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDA 408


>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           rugosa]
          Length = 348

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 63

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S F  M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFXEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 125/251 (49%), Gaps = 1/251 (0%)

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I + +   G     V YN +I+ +GKAK F E  S    M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEM-KAAGVMPNTXSYSTLLTMY 67

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             +    +    + E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 247

Query: 447 TEAAQNLENKM 457
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 148/343 (43%), Gaps = 39/343 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTXSYSTLLTMY 67

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     +  EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 68  VENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 126

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 127 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 353
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 354 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 303

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           +I    +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 304 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKL 346



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   
Sbjct: 8   SIFSRLKRSG-FTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTM 66

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 67  YVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 126

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            ++Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L  
Sbjct: 127 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 186

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 187 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYST 62

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 163/339 (48%), Gaps = 3/339 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K K    AL +F  +   +  +    T++ L+  L    +   AS L   M+   
Sbjct: 265 IDGLCKYKHMDDALNLFTEM-DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS LI       R D  
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMHDRLDEA 382

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           + +   M       + VTY+T+I G+ KAK+ EE    F  M + G    +  T  ++I 
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG-LVGNTVTYTTLIH 441

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  + + +  +  + +   +GV  +I T NIL     + G   K   V +++Q+    P
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            + TYNI+IE   KAG +E   E F  +  +G+ PN I Y +++S + + G   + DS+L
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLL 561

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           ++++    + ++  +N +I A  + GD E   EL   M+
Sbjct: 562 KKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMR 600



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 177/437 (40%), Gaps = 73/437 (16%)

Query: 92  KKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           ++ QL+L +  L +  +  Y+    T + L+      K+   A  L + M+  G KP   
Sbjct: 130 RRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTF 189

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            +T L+          EA + ++ M     C+PD+ TY  ++    K    DL   +L +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKK 248

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS------ 264
           M    IE   V YNTIIDG  K K  ++  + F+ M ++ G  PD+FT +S+IS      
Sbjct: 249 MEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM-DNKGIRPDVFTYSSLISCLCNYG 307

Query: 265 -----------------------------AYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                                        A+   G + + EK Y+E     +  DI T +
Sbjct: 308 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +      D+ + + + M  +  FP VVTY+ +I+ F KA  +E+  E F++M  R
Sbjct: 368 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR 427

Query: 356 GM-----------------------------------KPNSITYCSLVSAYSKAGLIMKV 380
           G+                                    PN +TY  L+    K G + K 
Sbjct: 428 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 487

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +   ++ S +  D   +N +I    +AG VE   ELF  +  +   P+ I + TMI  
Sbjct: 488 MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISG 547

Query: 441 YNALGMTEAAQNLENKM 457
           +   G  E A +L  KM
Sbjct: 548 FCRKGSKEEADSLLKKM 564



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 172/368 (46%), Gaps = 3/368 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+    LAL +   + + +  +A    +  ++  L K K  + A  LF  M + G++P V
Sbjct: 235 KRGDIDLALSLLKKMEKGK-IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV 293

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y++L+S     G   +A   ++DM       P+V T+S LI +  K  +    EK+  
Sbjct: 294 FTYSSLISCLCNYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM    I+    TY+++I+G+    + +E +  F  M+ S  C P++ T +++I  +  +
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYSTLIKGFCKA 411

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +E+  + + E +  G+  +  T   L   + +A   D  + V   M      P ++TY
Sbjct: 412 KRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           NI+++   K G + K    F+ ++   M+P+  TY  ++    KAG +     +   +  
Sbjct: 472 NILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL 531

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  +   +N +IS + + G  E+   L   MKE   +P++ T+ T+I+A    G  EA
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591

Query: 450 AQNLENKM 457
           +  L  +M
Sbjct: 592 SAELIKEM 599



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 122/283 (43%), Gaps = 37/283 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +  +A  L++ M+   + P +  Y++L++ +     LDEA      M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S  DC P+V TYS LIK   K  R +   ++  EMS  G+  + VTY T+I G+ +A+ 
Sbjct: 390 IS-KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448

Query: 236 FEEMESSFSAMVESGGCHP-----------------------------------DIFTLN 260
            +  +  F  MV S G HP                                   DI+T N
Sbjct: 449 CDNAQMVFKQMV-SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 507

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            MI     +G +E   + +   +L GV  ++   N +   + R G  ++  S++  M++ 
Sbjct: 508 IMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              P   TYN +I    + G  E   E  K+M+  G   ++ T
Sbjct: 568 GPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 610



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K  KFE +  S    +++ G   D++T +  I+ +     +      
Sbjct: 82  SIVEFNKLLSAVAKMNKFE-LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + DI TL+ L   Y  +       +++D M +  + P   T+  +I     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
                +      +M  RG +P+ +TY ++V+   K G I    S+L+++E   +  D   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +N II    +   ++    LF  M  +   PD  T++++I      G    A  L + MI
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 459 AMKEN 463
             K N
Sbjct: 321 ERKIN 325


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 161/377 (42%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +FT L++ LGK    + A  ++  ML+ G++PS+  +  +++   + G + EA   ++ +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               D  P+ +TY+ LI    + H  DL   +   M   G + ++VTY+T+I+G     +
Sbjct: 229 FRY-DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGR 287

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            EE       MV+ G                                  GC P+I T  +
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS     G  E     Y++    G+     T N L       G ++   ++  +M    
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P+  TYN +I+ F   G I+K    F KM   G  PN ITY +L+  Y K G +    
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L  ++ + +  D   +  +IS + + G +E    LF  M E    P+++T+  +I  Y
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 442 NALGMTEAAQNLENKMI 458
             L   + A  L  KM+
Sbjct: 528 FNLAKVDDALALFWKMV 544



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 6/352 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Y A    FT   ++LG C+    + A  +F+ M+ DG  P+   Y+ L++     G L+E
Sbjct: 231 YDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEE 290

Query: 168 AFSTINDMKSVSDCKPDVYTYSI-LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           A   + +M      +P VYTY+I L+  C      + +E +L +M   G   +  T+  +
Sbjct: 291 AMDMLEEMVQ-KGIEPTVYTYTIPLVSLCDAGCSSEAVE-LLGKMKKRGCVPNIQTFTAL 348

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I G  +  KFE     +  M+ + G  P   T N++I+     G  E     +      G
Sbjct: 349 ISGLSRDGKFEIAIGLYHKML-ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
                QT N + K +   G   K   + D M K    P V+TYN +I  + K G++    
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              + MK  G+KP++ TY  L+S +S+ G +    S+   +    +  +   +  II  Y
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                V+    LF  M E   +P + T+  MI  ++       A+N   KM+
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 153/359 (42%), Gaps = 18/359 (5%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT+ +++         ++A ++F+ ML  G  P+V  Y  L+  Y + G L+ A   +  
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEI 472

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK  +  KPD +TY+ LI   ++  + +    +   M   GI  + VTY  IIDGY    
Sbjct: 473 MKG-NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLA 531

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K ++  + F  MVESG   P   T N MIS +  + +I + E +  +    G+  ++ T 
Sbjct: 532 KVDDALALFWKMVESGNL-PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY--FKKM 352
                   R G       +   M+KR +FP + TY+ +I    + G  E  E Y    ++
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            H G +PN  TY +LV      G   + D ++  ++   +      +  ++    +   V
Sbjct: 651 THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNAL-------GMTEAAQNLENKMIAMKENS 464
           E    +F +M       D + F   +  Y AL          E AQ +   M+    NS
Sbjct: 711 ESALNIFYSM-------DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 155/342 (45%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L    + E+A  + E M+  G++P+V  YT  + +   +G   EA   +  M
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKM 333

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C P++ T++ LI   ++  +F++   +  +M   G+  + VTYN +I+      +
Sbjct: 334 KK-RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FE   + F  M+ S G  P   T N +I  +   G+I+K    +++    G   ++ T N
Sbjct: 393 FETAFTIFKWML-SHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  +    +++ M+     P   TY  +I  F + G +E     F  M   
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN +TY +++  Y     +    ++  ++  S  +  +  +N +IS + +   + + 
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 M ++  +P+ IT+ + I      G T  A  + ++M
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 108/269 (40%), Gaps = 2/269 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           P  +   ++IKSC        + + L+E+ S      +  ++ T++   GK    +    
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            +  M+ SG   P + T N+MI+     G +++ +   +         +  T   L   +
Sbjct: 189 MYIKMLNSG-IRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGH 247

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R    D   ++ D M K    P  VTY+ +I      G +E+  +  ++M  +G++P  
Sbjct: 248 CRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTV 307

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY   + +   AG   +   +L +++    + +   F  +IS   + G  E    L+  
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHK 367

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
           M     VP  +T+  +I      G  E A
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETA 396



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/137 (18%), Positives = 69/137 (50%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           F  T+ ++  ++   GK   ++   + + KM + G++P+ +T+ ++++   K G + +  
Sbjct: 163 FGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAK 222

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I+  +   D   +   +  +I  + +  +++    +F  M +  C P+++T++T+I   
Sbjct: 223 LIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGL 282

Query: 442 NALGMTEAAQNLENKMI 458
            + G  E A ++  +M+
Sbjct: 283 CSEGRLEEAMDMLEEMV 299


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 169/395 (42%), Gaps = 31/395 (7%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           +LALK F L R         +T++ L+  L +    E A  +++ M  DG  P   V   
Sbjct: 118 ELALKFFQLSRVNLNLCHSFRTYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGF 177

Query: 155 LVSAYGQSG------------------------------LLDEAFSTINDMKSVSDCKPD 184
           LVS+   +G                               +DEA     +   +     D
Sbjct: 178 LVSSATDAGKFNIARTWVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHG-PFD 236

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
             +++ILI+   +  + D   ++  EM   G     +TYNT+I+G+ +  + +       
Sbjct: 237 SCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLK 296

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            ++      PD+ T  S+IS Y   G +EK    +N     G+K +  T NIL   +G+ 
Sbjct: 297 ELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKV 356

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G      ++ + M      P ++T+  +I+   + G +E+  + + ++  R + PN  T+
Sbjct: 357 GDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTF 416

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             L +A  K   + +    LR ++   ++     +N +I  + +AG+V++   +   M+E
Sbjct: 417 AILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEE 476

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           + C PD IT+  +I  +   G    A ++ N+M+ 
Sbjct: 477 KRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLG 511



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 7/338 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV--YTALVSAYGQSGLLDEAFSTIN 173
            + KL+  L +  Q ++A   F   +  GL    D   +  L+    + G +D+AF   N
Sbjct: 204 VYNKLLNQLVRGNQVDEAVCFFREQM--GLHGPFDSCSFNILIRGLCRIGKVDKAFELFN 261

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGK 232
           +M+    C PDV TY+ LI    + +  D    +L E+ S   +    VTY +II GY K
Sbjct: 262 EMRGFG-CSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCK 320

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             K E+    F+ M+ SG   P+ FT N +I+ +G  G++   E  Y E  L+G   DI 
Sbjct: 321 LGKMEKASILFNNMISSG-IKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDII 379

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   L   + R G  ++   +   +  R   P   T+ I+     K   + +   + + +
Sbjct: 380 TFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDL 439

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K R +      Y  ++  + KAG + + + IL ++E      D   +  +I  +   G +
Sbjct: 440 KWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRL 499

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +   +F  M    C PD+IT  ++I      GM   A
Sbjct: 500 SEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEA 537



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 115/270 (42%), Gaps = 35/270 (12%)

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTI-IDGYGKAKKFEEMESSFSAMVESGGCH 253
           C  F  +  + + L+EM +   E +   Y+ + IDG+                       
Sbjct: 134 CHSFRTYSFLLRSLSEMGFH--ESAKAVYDCMNIDGHS---------------------- 169

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD   L  ++S+  ++G       W +     GV+  +   N L     R    D+  +V
Sbjct: 170 PDASVLGFLVSSATDAGKFNIARTWVD-----GVEFSLVVYNKLLNQLVRGNQVDE--AV 222

Query: 314 MDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             F ++          ++NI+I    + G ++K  E F +M+  G  P+ ITY +L++ +
Sbjct: 223 CFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGF 282

Query: 372 SKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
            +   + +   +L+++   +D+  D   +  IIS Y + G +EK   LF  M      P+
Sbjct: 283 CRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPN 342

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAM 460
             TF  +I  +  +G   +A+N+  +M+ +
Sbjct: 343 AFTFNILINGFGKVGDMVSAENMYEEMLLL 372



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 5/173 (2%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +T + L +S    G ++  ++V D M      P       ++ +   AG       +   
Sbjct: 138 RTYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVD- 196

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
               G++ + + Y  L++   +   + +     R+        D+  FN +I    + G 
Sbjct: 197 ----GVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGK 252

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           V+K  ELF  M+   C PD IT+ T+I  +  +   +   +L  ++++  + S
Sbjct: 253 VDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLS 305


>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 155/347 (44%), Gaps = 7/347 (2%)

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
           R Q  Y   C    + ++   K +  E+A+ + ++M+  G  P +  Y  LV    + GL
Sbjct: 159 RNQIPYFPSCINLIRGLI---KLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGL 215

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L  A   +++M S+S C PD  TY+ +++       FD       +    G     +TY 
Sbjct: 216 LKTAIELLDEM-SLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYT 274

Query: 225 TIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
            +I+   K     + ME      +E  GC+PDI T NS+++     G  E          
Sbjct: 275 VLIELVCKHCGTVQAMEVLEDMAIE--GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLL 332

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G+  +  T N L  S    G +D++  ++  M      PTVVTYNI+I    K G ++
Sbjct: 333 SHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLD 392

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +   +F +M      P+ ITY +L++A  K G++ +   +L  + ++        +N +I
Sbjct: 393 RAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVI 452

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               + G +EK  EL+  M ER   PD+IT  T+      L + E A
Sbjct: 453 DGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDA 499



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 2/294 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA   ++  L  G    +  YT L+    +     +A   + DM ++  C PD+ TY+ 
Sbjct: 252 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNS 310

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+    K  +++    I+  +   G+  + VTYNT++        ++E++     M  + 
Sbjct: 311 LVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTS 370

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P + T N +I+     G +++   ++++        DI T N L  +  + GM D+ 
Sbjct: 371 Q-PPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEA 429

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  +      P ++TYNIVI+   K G +EK  E + +M  RG  P+ IT+ +L   
Sbjct: 430 LHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWG 489

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             +  L+     IL+++   +  +    F  +I     AG +E+  +L   + E
Sbjct: 490 LFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCAAGMIEEANQLHQKLTE 543



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 3/235 (1%)

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I G  K +  E        MV SGG  PDI T N ++      G ++   +  +E +L 
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 229

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHIEK 344
           G   D  T N + +     G +D+         ++     ++TY ++IE   K  G ++ 
Sbjct: 230 GCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQA 289

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
           ME   + M   G  P+ +TY SLV+   K G       I+  + +  +  +T  +N ++ 
Sbjct: 290 ME-VLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLH 348

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +    G  +++ E+ L M      P  +T+  +I      G+ + A N  ++M++
Sbjct: 349 SLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVS 403


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 3/327 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L+   K KK   A  IF  +  ++       +++ L+    K  +  +A  L++ M+   
Sbjct: 128 LNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN 187

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+V  Y A ++   + G + +A     +M S + C PDV TYS LI   +   + D  
Sbjct: 188 CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMIS-AGCSPDVITYSTLIHGFSLARKHDQA 246

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G   +AVTYN ++ G  K  K +E    F  MVE  GC PD  T  +++ 
Sbjct: 247 HELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER-GCDPDKVTYTTLLY 305

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            + N G IE+  + ++E    G   D+   N L K + RAG   + R +   M  R   P
Sbjct: 306 GFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKP 365

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             V++NI+I+   KA  ++   E F++M+   G  P+ +TY SL+        + +   +
Sbjct: 366 DTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKV 425

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAG 410
            ++++   +  D   FN ++ A   AG
Sbjct: 426 FKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 146/322 (45%), Gaps = 9/322 (2%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCK 182
           L K  + + A  L E M+  G  P +  ++ L++   ++  + EA   +  M +++S   
Sbjct: 59  LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRA 118

Query: 183 PDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
              ++Y+ L+ S  K  +    F +   +++E S +      V+Y+ +IDG+ K  +   
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVP---DVVSYSILIDGFCKIDELGR 175

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            E  +  M++   C P++ T N+ ++     G I   +  Y E    G   D+ T + L 
Sbjct: 176 AEKLYKQMIDLN-CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLI 234

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             +  A  +D+   + + M  R   P  VTYN ++    K    ++  E F+KM  RG  
Sbjct: 235 HGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 294

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+ +TY +L+  +   G I +   +  ++ +     D   +NC++  + +AG   +  +L
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQL 354

Query: 419 FLTMKERHCVPDNITFATMIQA 440
           F  M  R C PD ++   MI  
Sbjct: 355 FQVMVSRECKPDTVSHNIMIDG 376



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 2/288 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y +L+++  ++  + +AF+  + M S     PDV +YSILI    K       EK+  +M
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             L    +  TYN  ++G  +  +  + +  +  M+ S GC PD+ T +++I  +  +  
Sbjct: 184 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMI-SAGCSPDVITYSTLIHGFSLARK 242

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            ++  + +      G + +  T N L     +    D+   +   M +R   P  VTY  
Sbjct: 243 HDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++  F   G IE+  E F +M  +G  P+ + Y  L+  + +AG   +   + + + + +
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMI 438
              DT   N +I    +A  ++   E+F  M++ H C PD +T+ ++I
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 410



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 38/308 (12%)

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
           +++    ++G +D A S +  M     C PD+ T+S+LI    K  +    ++ L  M+ 
Sbjct: 54  SVIQELCKAGRVDSALSLLETMIKRGYC-PDMATHSMLINELCKADKIQEAQEFLQGMNR 112

Query: 214 L--GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                  S  +YN++++   KAKK  +  + FS MV      PD+ + + +I  +     
Sbjct: 113 TISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE 172

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           + + EK Y +   +    ++ T N       R G     + V + M      P V+TY+ 
Sbjct: 173 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I  F  A   ++  E F+ M  RG +PN++TY                           
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTY--------------------------- 265

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
                   NC++    +    ++  ELF  M ER C PD +T+ T++  +  +G  E A 
Sbjct: 266 --------NCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAV 317

Query: 452 NLENKMIA 459
            + ++M++
Sbjct: 318 EVFDEMVS 325



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+      ++ +QA  LFE M+S G +P+   Y  L+    +    DEA      M
Sbjct: 229 TYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 288

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C PD  TY+ L+       + +   ++  EM   G +   V YN ++ G+ +A K
Sbjct: 289 VE-RGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 347

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEKWYNEFNLMGVK 288
             E    F  MV S  C PD  + N MI     +  +       E+ME+ +      G  
Sbjct: 348 PGEARQLFQVMV-SRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDH------GCS 400

Query: 289 ADIQTLNILTKSYGRAG---MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
            D+ T N L   +G  G   + + M+ V   + +    P    +N+++E    AGH
Sbjct: 401 PDLVTYNSLI--FGLCGEQRLSEAMK-VFKEIDRLKLSPDPHAFNVLLEAMYAAGH 453


>gi|242078641|ref|XP_002444089.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
 gi|241940439|gb|EES13584.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
          Length = 942

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 154/305 (50%), Gaps = 15/305 (4%)

Query: 145 LKPSVDV-----YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           LK S  V     Y+ +V  Y ++  L++A S + +M+   +  PD Y +  ++++   + 
Sbjct: 615 LKASASVLDMIAYSVIVRMYIKAQRLEDACSILAEMEKQKEIIPDKYLFLDMLRT---YQ 671

Query: 200 RFDLIEKILAEMSYL----GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           +  L+EK LA+  Y      +EC    YN II+  G+A   +E+   F  M++ G    +
Sbjct: 672 KCGLLEK-LADTYYWIRKSQVECDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHL-AN 729

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             TLN ++  YG +G   + EK +      G+ ADI + N +  +Y ++G +  M   + 
Sbjct: 730 TVTLNVLLDIYGKAGLFNRAEKVFIMARKQGL-ADIISYNTIIAAYAKSGNFHSMNYFVQ 788

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            MQ   F  +   YN +++ +GKAG +E+     +KMK    K +  TY  +++ Y + G
Sbjct: 789 MMQDAGFPVSPEAYNCMLDAYGKAGQLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRG 848

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            I  V ++L ++++  V+ D   +N +I AYG A   E   +L   M+ +   PD +T+A
Sbjct: 849 WIEDVSNVLAELKDRGVVPDLYSYNTLIKAYGIARMPEDAVKLMQEMRIKGISPDRVTYA 908

Query: 436 TMIQA 440
            +I A
Sbjct: 909 NLIAA 913



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 51/350 (14%)

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           ++Y  L+ +  + G  ++A    N M KS +   P +        SCT    F ++++  
Sbjct: 555 NLYHMLICSCKEGGSYNDAVRIYNQMPKSETHPNPRI--------SCTMIDVFSMMKRFA 606

Query: 209 -AEMSYLGIECSA-----VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            AE  YL ++ SA     + Y+ I+  Y KA++ E+  S  + M +     PD +    M
Sbjct: 607 DAEAIYLELKASASVLDMIAYSVIVRMYIKAQRLEDACSILAEMEKQKEIIPDKYLFLDM 666

Query: 263 ISAYGNSGNIEKM---------------EKWYN--------------------EFNLMGV 287
           +  Y   G +EK+               E  YN                    E    G 
Sbjct: 667 LRTYQKCGLLEKLADTYYWIRKSQVECDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGH 726

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
            A+  TLN+L   YG+AG++++   V   M ++     +++YN +I  + K+G+   M  
Sbjct: 727 LANTVTLNVLLDIYGKAGLFNRAEKVF-IMARKQGLADIISYNTIIAAYAKSGNFHSMNY 785

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
           + + M+  G   +   Y  ++ AY KAG + +  S+L++++ +    D   +N +I+ YG
Sbjct: 786 FVQMMQDAGFPVSPEAYNCMLDAYGKAGQLEEFASVLQKMKRAKCKFDHYTYNIMINIYG 845

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + G +E +  +   +K+R  VPD  ++ T+I+AY    M E A  L  +M
Sbjct: 846 RRGWIEDVSNVLAELKDRGVVPDLYSYNTLIKAYGIARMPEDAVKLMQEM 895



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 39/294 (13%)

Query: 116 TFTKLMVMLGKCKQPEQA-SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            ++ ++ M  K ++ E A S+L E+     + P   ++  ++  Y + GLL++   T   
Sbjct: 626 AYSVIVRMYIKAQRLEDACSILAEMEKQKEIIPDKYLFLDMLRTYQKCGLLEKLADTYYW 685

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++  S  + D   Y+ +I  C +    D + +I  EM   G   + VT N ++D YGKA 
Sbjct: 686 IRK-SQVECDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAG 744

Query: 235 KFEEMESSF------------------SAMVESGGCH-----------------PDIFTL 259
            F   E  F                  +A  +SG  H                 P+ +  
Sbjct: 745 LFNRAEKVFIMARKQGLADIISYNTIIAAYAKSGNFHSMNYFVQMMQDAGFPVSPEAY-- 802

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N M+ AYG +G +E+      +      K D  T NI+   YGR G  + + +V+  ++ 
Sbjct: 803 NCMLDAYGKAGQLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRGWIEDVSNVLAELKD 862

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           R   P + +YN +I+ +G A   E   +  ++M+ +G+ P+ +TY +L++A  +
Sbjct: 863 RGVVPDLYSYNTLIKAYGIARMPEDAVKLMQEMRIKGISPDRVTYANLIAALQR 916



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 169/422 (40%), Gaps = 74/422 (17%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A K F ++ +++  Q    TF  LMV+  K  +  +A   F+ M +  +K  V+ Y+A++
Sbjct: 260 ATKWFHMMLERE-VQPNLSTFGMLMVLYQKTGKLSEAEFTFQKMRNCNIK-CVNAYSAMI 317

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y + GL  ++  TIN M +     P++  + + +    +  + +  E +L  M   G 
Sbjct: 318 TLYTRLGLFAKSEDTINLMNN-DGLVPNMENWLVRLNVYCQQGKMEEAELVLQSMVDEGF 376

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-- 274
             + V YNT+I GYGK+   ++    F ++  S G  PD  T  SM+  +G +   E+  
Sbjct: 377 TLNIVAYNTLITGYGKSSDVQKANRVFDSL-GSAGLAPDETTYRSMVEGFGRANIYEEAI 435

Query: 275 --------------MEKWYNEFNLMGVKADIQT------------------LNILTKSYG 302
                            +Y   NL+  + D +T                  + +L ++YG
Sbjct: 436 LYYRKLKGAGFRPNASNFYTMINLLARRDDNETAAEIMEDMRAAGCQCSSIVTVLVRAYG 495

Query: 303 RAGMYDKMRSVMD--FMQKRFFFPTVVT-------------------------------- 328
             G   K+  ++   F +K  F  T  +                                
Sbjct: 496 AVGRMHKVLPILQACFNKKILFDATSCSILVTSFVQKSLLEEALYILREKKWKDSAFEDN 555

Query: 329 -YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            Y+++I +  + G        + +M      PN    C+++  +S        ++I  ++
Sbjct: 556 LYHMLICSCKEGGSYNDAVRIYNQMPKSETHPNPRISCTMIDVFSMMKRFADAEAIYLEL 615

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPDNITFATMIQAYNALGM 446
           + S  +LD   ++ I+  Y +A  +E    +   M K++  +PD   F  M++ Y   G+
Sbjct: 616 KASASVLDMIAYSVIVRMYIKAQRLEDACSILAEMEKQKEIIPDKYLFLDMLRTYQKCGL 675

Query: 447 TE 448
            E
Sbjct: 676 LE 677



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 5/273 (1%)

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +M + S C  D   ++ LI  C K        K    M    ++ +  T+  ++  Y K 
Sbjct: 230 EMVADSGCTLDARAFNGLIYVCAKRRLDAWATKWFHMMLEREVQPNLSTFGMLMVLYQKT 289

Query: 234 KKFEEMESSFSAMVESGGCHPD-IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            K  E E +F  M     C+   +   ++MI+ Y   G   K E   N  N  G+  +++
Sbjct: 290 GKLSEAEFTFQKMRN---CNIKCVNAYSAMITLYTRLGLFAKSEDTINLMNNDGLVPNME 346

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
              +    Y + G  ++   V+  M    F   +V YN +I  +GK+  ++K    F  +
Sbjct: 347 NWLVRLNVYCQQGKMEEAELVLQSMVDEGFTLNIVAYNTLITGYGKSSDVQKANRVFDSL 406

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G+ P+  TY S+V  + +A +  +     R+++ +    +   F  +I+   +  D 
Sbjct: 407 GSAGLAPDETTYRSMVEGFGRANIYEEAILYYRKLKGAGFRPNASNFYTMINLLARRDDN 466

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           E   E+   M+   C   +I    +++AY A+G
Sbjct: 467 ETAAEIMEDMRAAGCQCSSIV-TVLVRAYGAVG 498



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 1/205 (0%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           MV   GC  D    N +I             KW++      V+ ++ T  +L   Y + G
Sbjct: 231 MVADSGCTLDARAFNGLIYVCAKRRLDAWATKWFHMMLEREVQPNLSTFGMLMVLYQKTG 290

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +       M +      V  Y+ +I  + + G   K E+    M + G+ PN   + 
Sbjct: 291 KLSEAEFTFQKM-RNCNIKCVNAYSAMITLYTRLGLFAKSEDTINLMNNDGLVPNMENWL 349

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
             ++ Y + G + + + +L+ + +    L+   +N +I+ YG++ DV+K   +F ++   
Sbjct: 350 VRLNVYCQQGKMEEAELVLQSMVDEGFTLNIVAYNTLITGYGKSSDVQKANRVFDSLGSA 409

Query: 426 HCVPDNITFATMIQAYNALGMTEAA 450
              PD  T+ +M++ +    + E A
Sbjct: 410 GLAPDETTYRSMVEGFGRANIYEEA 434



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/275 (17%), Positives = 117/275 (42%), Gaps = 3/275 (1%)

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYN 224
           ++A +  + MK     K + + Y + +++      + + E +L EM +  G    A  +N
Sbjct: 186 EKALNFFDWMKVNGKLKGNPHAYHLALQAIAWKEDWKMAELLLCEMVADSGCTLDARAFN 245

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I    K ++ +   + +  M+      P++ T   ++  Y  +G + + E  + +   
Sbjct: 246 GLIYVCAK-RRLDAWATKWFHMMLEREVQPNLSTFGMLMVLYQKTGKLSEAEFTFQKMRN 304

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
             +K  +   + +   Y R G++ K    ++ M      P +  + + +  + + G +E+
Sbjct: 305 CNIKC-VNAYSAMITLYTRLGLFAKSEDTINLMNNDGLVPNMENWLVRLNVYCQQGKMEE 363

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            E   + M   G   N + Y +L++ Y K+  + K + +   + ++ +  D   +  ++ 
Sbjct: 364 AELVLQSMVDEGFTLNIVAYNTLITGYGKSSDVQKANRVFDSLGSAGLAPDETTYRSMVE 423

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            +G+A   E+    +  +K     P+   F TMI 
Sbjct: 424 GFGRANIYEEAILYYRKLKGAGFRPNASNFYTMIN 458


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K K+   A   F  + +++  +    T+T L+  L    +   A+ L   M+   
Sbjct: 197 IDSLCKTKRVNDAFDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+V  Y+AL+ A+ ++G + EA     +M  +S   PD+ TYS L+       R D  
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLVNGLCLHDRIDEA 314

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G     V+YNT+I+G+ KAK+ E+    F  M + G    +  T N++I 
Sbjct: 315 NQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG-LVSNTVTYNTLIQ 373

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  +G+++K ++++++ +  G+  DI T NIL       G  +K   + + MQKR    
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            +VTY  VI    K G +E+    F  +  +G+KP+ +TY +++S     GL+ +V+++
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEAL 492



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 167/363 (46%), Gaps = 3/363 (0%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
            LAL I G + +  +   R  T   L+    +  +   A  L + M+  G KP +  Y A
Sbjct: 137 SLALSILGKMLKLGYEPDRV-TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++ +  ++  +++AF    +++     +P+V TY+ L+       R+    ++L++M   
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I  + +TY+ ++D + K  K  E +  F  MV      PDI T +S+++       I++
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLVNGLCLHDRIDE 313

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             + ++     G  AD+ + N L   + +A   +    +   M +R      VTYN +I+
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            F +AG ++K +E+F +M   G+ P+  TY  L+      G + K   I   ++  ++ L
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   +  +I    + G VE+   LF ++  +   PD +T+ TM+      G+    + L 
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493

Query: 455 NKM 457
            KM
Sbjct: 494 TKM 496



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 157/338 (46%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++     C Q   A  +   ML  G +P      +LV+ + +   + +A S ++ M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   KPD+  Y+ +I S  K  R +       E+   GI  + VTY  +++G   + +
Sbjct: 182 VEIG-YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           + +     S M++     P++ T ++++ A+  +G + + ++ + E   M +  DI T +
Sbjct: 241 WSDAARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L          D+   + D M  +     VV+YN +I  F KA  +E   + F++M  R
Sbjct: 300 SLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N++TY +L+  + +AG + K      Q++   +  D   +N ++      G++EK 
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 419

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +F  M++R    D +T+ T+I+     G  E A +L
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 457



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 141/328 (42%), Gaps = 37/328 (11%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L++A    +DM   S   P +  ++ L+ +  K  ++D++  +  +M  LGI     T+N
Sbjct: 66  LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 225 TII-----------------------------------DGYGKAKKFEEMESSFSAMVES 249
            +I                                   +G+ +  +  +  S    MVE 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
           G   PDI   N++I +   +  +     ++ E    G++ ++ T   L      +  +  
Sbjct: 185 GY-KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              ++  M K+   P V+TY+ +++ F K G + + +E F++M    + P+ +TY SLV+
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVN 303

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
                  I + + +   + +   + D   +N +I+ + +A  VE   +LF  M +R  V 
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 363

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           + +T+ T+IQ +   G  + AQ   ++M
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQM 391



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K KK++ +  S    +E  G   D++T N +I+ +     +      
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVV-ISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + D  T+  L   + R        S++D M +  + P +V YN +I++  K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              +    ++FK+++ +G++PN +TY +LV+    +        +L  +    +  +   
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++ ++ A+ + G V +  ELF  M      PD +T+++++         + A  + + M+
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMV 322

Query: 459 A 459
           +
Sbjct: 323 S 323


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 4/329 (1%)

Query: 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
           VM G+ K  E  S L E M++ G +P +  Y  L+    + G L  A   +N+M S   C
Sbjct: 365 VMSGQLK--EAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGC 421

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +P+V TY+IL+    K    +    +L EMS  G+  ++V YN +I    + +K     +
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
             S M  + GC PD+FT NS+I        I++  + ++   L G  A+  T N L  + 
Sbjct: 482 LLSEMC-TKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R G + K  ++++ M  R      +TYN +I+ F K G+IEK  E +++M   G+  ++
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           I+   +++   K G +      LR   N   + D   +N +++   + G +++   LF  
Sbjct: 601 ISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR 660

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
           ++     PD  T+ T I      GM   A
Sbjct: 661 LQVEGVRPDAFTYNTFISWQCKEGMVNDA 689



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 155/390 (39%), Gaps = 40/390 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  +M  L    + + A  L   M   G  P+  VY  L+ A  Q   + EA   + +M
Sbjct: 220 TFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM 279

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY------------ 223
             V  C PDV T++ +I    K ++     K++  M   G     +TY            
Sbjct: 280 -FVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGK 338

Query: 224 -------------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                              NT+I+GY  + + +E +S  +  + + G  PDIFT N ++ 
Sbjct: 339 LNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMH 398

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G++       NE +  G + ++ T  IL     +AG+ ++   V+  M  R    
Sbjct: 399 GLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTI 458

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V YN +I    +   +        +M  +G KP+  TY SL+    K   + ++D   
Sbjct: 459 NSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCK---VDRIDEAF 515

Query: 385 RQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           R   N      + +   +N +I A  + G  +K   L   M  R C  D IT+  +I+A+
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 442 NALGMTEAAQNLENKMIAMKENSGKKLIQC 471
             +G  E    L  +MI   +  G   I C
Sbjct: 576 CKVGNIEKGLELYEQMIM--DGLGADTISC 603



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 159/368 (43%), Gaps = 16/368 (4%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS---DGLKPSVDVYTA 154
           L+IF  +  Q+ Y   C TF    V + K     +  L+ ++++    +G+     ++  
Sbjct: 96  LEIFERVGGQKGY---CHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMI 152

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++  YG++G   +A   + DM++V  C+P   +Y ++++     +   +   +  +M   
Sbjct: 153 IMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSK 212

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNI 272
           G+  +  T+  ++        F E++S+ S +  +   GC P+     ++I A      +
Sbjct: 213 GVSPTVFTFGIVMKALCM---FNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQV 269

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  K   E  +MG   D+QT N +     +         ++D M  R F+P  +TY  +
Sbjct: 270 SEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL 329

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-NSD 391
           +    + G + +  +   K+      PN+    +L++ Y  +G + +  S L +   N  
Sbjct: 330 LHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              D   +N ++    + G +    +L   M  R C P+ IT+A ++      G+ E A 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAG 445

Query: 452 NLENKMIA 459
            + ++M A
Sbjct: 446 LVLHEMSA 453



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 2/229 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  LF  ML DG   +   Y  L+ A  + G   +A + +NDM
Sbjct: 497 TYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDM 556

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  D  TY+ LIK+  K    +   ++  +M   G+    ++ N +I+G  K  K
Sbjct: 557 L-FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGK 615

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +         +  G   PDI T NS+++     G I++    ++   + GV+ D  T N
Sbjct: 616 VDNAFEFLRDAINRGFV-PDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYN 674

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                  + GM +   S      +  F P+ +T+N+++ T  K  + E 
Sbjct: 675 TFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 161/377 (42%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +FT L++ LGK    + A  ++  ML+ G++PS+  +  +++   + G + EA   ++ +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               D  P+ +TY+ LI    + H  DL   +   M   G + ++VTY+T+I+G     +
Sbjct: 229 FRY-DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGR 287

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
            EE       MV+ G                                  GC P+I T  +
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +IS     G  E     Y++    G+     T N L       G ++   ++  +M    
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P+  TYN +I+ F   G I+K    F KM   G  PN ITY +L+  Y K G +    
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L  ++ + +  D   +  +IS + + G +E    LF  M E    P+++T+  +I  Y
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 442 NALGMTEAAQNLENKMI 458
             L   + A  L  KM+
Sbjct: 528 FNLAKVDDALALFWKMV 544



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 6/352 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Y A    FT   ++LG C+    + A  +F+ M+ DG  P+   Y+ L++     G L+E
Sbjct: 231 YDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEE 290

Query: 168 AFSTINDMKSVSDCKPDVYTYSI-LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           A   + +M      +P VYTY+I L+  C      + +E +L +M   G   +  T+  +
Sbjct: 291 AMDMLEEMVQ-KGIEPTVYTYTIPLVSLCDAGCSSEAVE-LLGKMKKRGCVPNIQTFTAL 348

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I G  +  KFE     +  M+ + G  P   T N++I+     G  E     +      G
Sbjct: 349 ISGLSRDGKFEIAIGLYHKML-ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
                QT N + K +   G   K   + D M K    P V+TYN +I  + K G++    
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              + MK  G+KP++ TY  L+S +S+ G +    S+   +    +  +   +  II  Y
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                V+    LF  M E   +P + T+  MI  ++       A+N   KM+
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 153/359 (42%), Gaps = 18/359 (5%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT+ +++         ++A ++F+ ML  G  P+V  Y  L+  Y + G L+ A   +  
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEI 472

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK  +  KPD +TY+ LI   ++  + +    +   M   GI  + VTY  IIDGY    
Sbjct: 473 MKG-NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLA 531

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K ++  + F  MVESG   P   T N MIS +  + +I + E +  +    G+  ++ T 
Sbjct: 532 KVDDALALFWKMVESGNL-PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY--FKKM 352
                   R G       +   M+KR +FP + TY+ +I    + G  E  E Y    ++
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            H G +PN  TY +LV      G   + D ++  ++   +      +  ++    +   V
Sbjct: 651 THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNAL-------GMTEAAQNLENKMIAMKENS 464
           E    +F +M       D + F   +  Y AL          E AQ +   M+    NS
Sbjct: 711 ESALNIFYSM-------DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 155/342 (45%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+  L    + E+A  + E M+  G++P+V  YT  + +   +G   EA   +  M
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKM 333

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K    C P++ T++ LI   ++  +F++   +  +M   G+  + VTYN +I+      +
Sbjct: 334 KK-RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FE   + F  M+ S G  P   T N +I  +   G+I+K    +++    G   ++ T N
Sbjct: 393 FETAFTIFKWML-SHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + G  +    +++ M+     P   TY  +I  F + G +E     F  M   
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN +TY +++  Y     +    ++  ++  S  +  +  +N +IS + +   + + 
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 M ++  +P+ IT+ + I      G T  A  + ++M
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 108/269 (40%), Gaps = 2/269 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           P  +   ++IKSC        + + L+E+ S      +  ++ T++   GK    +    
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            +  M+ SG   P + T N+MI+     G +++ +   +         +  T   L   +
Sbjct: 189 MYIKMLNSG-IRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGH 247

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R    D   ++ D M K    P  VTY+ +I      G +E+  +  ++M  +G++P  
Sbjct: 248 CRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTV 307

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            TY   + +   AG   +   +L +++    + +   F  +IS   + G  E    L+  
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHK 367

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
           M     VP  +T+  +I      G  E A
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETA 396



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/164 (17%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           ++ KS    G   ++   +  +  ++ F  T+ ++  ++   GK   ++   + + KM +
Sbjct: 136 LMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLN 195

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G++P+ +T+ ++++   K G + +   I+  +   D   +   +  +I  + +  +++ 
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              +F  M +  C P+++T++T+I    + G  E A ++  +M+
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 167/383 (43%), Gaps = 38/383 (9%)

Query: 113 RCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           R   +T  +++ G CKQ   E+A  + +    +GL     +Y   V+ Y + G +++A  
Sbjct: 348 RINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAIL 407

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           TI  M+S    +P+  T++ LI         D  E+ + +M+  G+  S  TYNT+IDGY
Sbjct: 408 TIERMESFG-LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY 466

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           GK   F+        M E  G  P++ +  S+I+     G I + E    +    GV  +
Sbjct: 467 GKLCTFDRCFQILEQM-EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPN 525

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
            Q  N+L       G         D M +    PT+VTYN++I+   K G + + E++  
Sbjct: 526 AQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLT 585

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMK------------------------------- 379
           ++   G  P+ ITY SL+S Y+ AG + K                               
Sbjct: 586 QITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG 645

Query: 380 ---VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
              V+ +  ++   +++ D   +N +I  Y + G+ +K   L   M ++   PD +T+ +
Sbjct: 646 IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNS 705

Query: 437 MIQAYNALGMTEAAQNLENKMIA 459
           +I  +   G     ++L N M A
Sbjct: 706 LILGHFREGKLSNIKDLVNNMKA 728



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 46/384 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAFSTIN 173
           TF  L+  L K ++ ++A  L + M  +G  P    Y+ L       GLL  D+    + 
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFD-----GLLRCDDGNGAME 337

Query: 174 DMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
             +  ++   + + YT SIL+    K  + +  E+IL + +  G+    V YNT ++GY 
Sbjct: 338 LYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYC 397

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +     +   +   M ES G  P+  T NS+I  + +   ++K E+W  +    GV   +
Sbjct: 398 RIGDMNKAILTIERM-ESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSV 456

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           +T N L   YG+   +D+   +++ M++    P VV+Y  +I    K G I + E   + 
Sbjct: 457 ETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRD 516

Query: 352 MKHRGMKPNS-----------------------------------ITYCSLVSAYSKAGL 376
           M  RG+ PN+                                   +TY  L+    K G 
Sbjct: 517 MICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGK 576

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + + +  L Q+ +S    D   +N +IS Y  AG+V K   L+ TMK     P   T+  
Sbjct: 577 LTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHP 636

Query: 437 MIQAYNALGMTEAAQNLENKMIAM 460
           +I   +  G+ E  + L N+M+ M
Sbjct: 637 LISGCSKEGI-ELVEKLYNEMLQM 659



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 148/350 (42%), Gaps = 38/350 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+      K+ ++A    + M   G+ PSV+ Y  L+  YG+    D  F  +  M
Sbjct: 423 TFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQM 482

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--------------- 220
           + +   KP+V +Y  LI    K  +    E +L +M   G+  +A               
Sbjct: 483 EEIG-VKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGK 541

Query: 221 --------------------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                               VTYN +IDG  K  K  E E  F   + S G  PD+ T N
Sbjct: 542 VKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAED-FLTQITSSGHSPDVITYN 600

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+IS Y N+GN+ K    Y     +G+K  ++T + L     + G+ + +  + + M + 
Sbjct: 601 SLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGI-ELVEKLYNEMLQM 659

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P  V YN +I  + + G+ +K     + M  +G+ P+ +TY SL+  + + G +  +
Sbjct: 660 NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNI 719

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             ++  ++  ++      ++ ++  +    D       +  M E + +P+
Sbjct: 720 KDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPN 769



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 9/280 (3%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           + D + Y+  I++  K     +  + L  M   G+  +   YN +I G  + K+  + E 
Sbjct: 173 RTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEK 232

Query: 242 SFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
            F  M     C+ +    I T N++I  Y   G ++   K         V  +I T N L
Sbjct: 233 MFDEM-----CNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSL 287

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
                +     + RS++  M+   F P   TY+I+ +   +        E +++   +G+
Sbjct: 288 LSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGI 347

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           + N+ T   L++   K G + K + IL++   + ++ D   +N  ++ Y + GD+ K   
Sbjct: 348 RINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAIL 407

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               M+     P++ITF ++I  +  +   + A+    KM
Sbjct: 408 TIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKM 447



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 5/218 (2%)

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           +E+ G   D F     I A     N++   ++ +     GV+ ++   N+L     R   
Sbjct: 167 IENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKR 226

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
                 + D M       ++VTYN +I+ + K G ++   +  ++MK + + PN IT+ S
Sbjct: 227 IRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNS 286

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+S   K   + +  S+L+++E +  + D   ++ +     +  D     EL+    E+ 
Sbjct: 287 LLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKG 346

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNL-----ENKMIA 459
              +N T + ++      G  E A+ +     EN ++A
Sbjct: 347 IRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVA 384


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 185/398 (46%), Gaps = 27/398 (6%)

Query: 85  LDEAIKQKKWQLALKIFGLL-----------RQQQWYQ--------ARCQTFTKLMVMLG 125
           L EA+K+K +   + ++G L           R ++ +         A   T++ L+  L 
Sbjct: 236 LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLC 295

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           +  Q ++A+ +   M   G+ P V  YT L+    + G    A   +N M    + +P  
Sbjct: 296 RLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE-EPSN 354

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY++L+    K        KIL  M   G +   VTYNT++ G     K +E    F++
Sbjct: 355 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNS 414

Query: 246 MVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
           M ++  C  P++FT N +I      G + K  K + +    G   ++ T N+L     +A
Sbjct: 415 MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA 474

Query: 305 GMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G   K++  M+  ++     F P   TY+I+I+ F K   +   +  F +M+  G+ P  
Sbjct: 475 G---KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPAL 531

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L+++  K G + +  S+ +++ N++   D   FN +I    +AGD + + EL + 
Sbjct: 532 FDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMK 591

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M E    PD +TF+T+I   + LG  + A++   +M+A
Sbjct: 592 MVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 629



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 173/378 (45%), Gaps = 9/378 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   + + + LA  ++  +       +   + + L+      ++P+    +  ++L  G
Sbjct: 81  VDALARSRNYGLAFSVYRRMTHVDVLPSF-GSLSALIECFADAQKPQLGFGVVGLVLKRG 139

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFD 202
              +V +   ++    ++G + EA   I +M  KSVS   PD+ +Y+ LI    K  +  
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVS---PDIVSYNTLINGLCKAKKLK 196

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               +L EM   G   ++VT  T++DG  K  + +E      AM +  G   D+    ++
Sbjct: 197 EAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM-KKKGFDADVVLYGTL 255

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           IS + N+GN+++ ++ ++E    G+ A++ T + L     R G + +  +V++ M +   
Sbjct: 256 ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 315

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVTY  +I+   K G      +    M  +G +P+++TY  L+S   K GL++    
Sbjct: 316 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 375

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCV-PDNITFATMIQA 440
           ILR +       D   +N ++      G V++  +LF +M    +C+ P+  TF  +I  
Sbjct: 376 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 435

Query: 441 YNALGMTEAAQNLENKMI 458
               G    A  +  KM+
Sbjct: 436 LCKEGRLTKAVKIHRKMV 453



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 4/327 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF+ ML  G+  +V  Y+ LV    + G   EA + +N M       PDV TY+ LI   
Sbjct: 271 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE-HGIHPDVVTYTGLIDGL 329

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R      +L  M   G E S VTYN ++ G  K     +       M+E G    D
Sbjct: 330 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-KAD 388

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEF--NLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           + T N+++    + G +++  K +N    N   ++ ++ T N+L     + G   K   +
Sbjct: 389 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              M K+     +VTYN+++    KAG I++  E +K++   G  PNS TY  L+  + K
Sbjct: 449 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 508

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
             ++     +  ++    +      +N ++++  + G +E+   LF  M   +C PD I+
Sbjct: 509 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 568

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAM 460
           F TMI      G  +  + L+ KM+ M
Sbjct: 569 FNTMIDGTLKAGDFQFVKELQMKMVEM 595



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 4/321 (1%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++ G CK+     A  +  +M+  G K  V  Y  L+      G +DEA    N M   
Sbjct: 359 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418

Query: 179 SDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
            +C +P+V+T+++LI    K  R     KI  +M   G   + VTYN ++ G  KA K +
Sbjct: 419 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 478

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E    +  +++ G   P+ FT + +I  +     +   +  + E    G+   +   N L
Sbjct: 479 EAMELWKQVLDLGFV-PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTL 537

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             S  + G  ++ +S+   M      P ++++N +I+   KAG  + ++E   KM   G+
Sbjct: 538 MASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 597

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           +P+++T+ +L++  SK G + +  S L ++  S    D   ++ ++      GD  ++  
Sbjct: 598 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 657

Query: 418 LFLTMKERHCVPDNITFATMI 438
           L   M  +  V D    +T++
Sbjct: 658 LLHQMAAKGTVLDRKIVSTIL 678



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/280 (17%), Positives = 116/280 (41%), Gaps = 1/280 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P   T + L+ +  +   + L   +   M+++ +  S  + + +I+ +  A+K  ++   
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQK-PQLGFG 130

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              +V   G   ++F +N ++     +G + +      E     V  DI + N L     
Sbjct: 131 VVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLC 190

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +A    +   ++  M+    FP  VT   +++   K G +++  E  + MK +G   + +
Sbjct: 191 KAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVV 250

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y +L+S +   G + +   +  ++    +  +   ++C++    + G  ++   +   M
Sbjct: 251 LYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM 310

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
            E    PD +T+  +I      G    A +L N M+   E
Sbjct: 311 AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE 350


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 4/329 (1%)

Query: 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
           VM G+ K  E  S L E M++ G +P +  Y  L+    + G L  A   +N+M S   C
Sbjct: 365 VMSGQLK--EAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGC 421

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +P+V TY+IL+    K    +    +L EMS  G+  ++V YN +I    + +K     +
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
             S M  + GC PD+FT NS+I        I++  + ++   L G  A+  T N L  + 
Sbjct: 482 LLSEMC-TKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            R G + K  ++++ M  R      +TYN +I+ F K G+IEK  E +++M   G+  ++
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           I+   +++   K G +      LR   N   + D   +N +++   + G +++   LF  
Sbjct: 601 ISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR 660

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
           ++     PD  T+ T I      GM   A
Sbjct: 661 LQVEGVRPDAFTYNTFISWQCKEGMVNDA 689



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 155/390 (39%), Gaps = 40/390 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  +M  L    + + A  L   M   G  P+  VY  L+ A  Q   + EA   + +M
Sbjct: 220 TFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM 279

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY------------ 223
             V  C PDV T++ +I    K ++     K++  M   G     +TY            
Sbjct: 280 -FVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGK 338

Query: 224 -------------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
                              NT+I+GY  + + +E +S  +  + + G  PDIFT N ++ 
Sbjct: 339 LNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMH 398

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G++       NE +  G + ++ T  IL     +AG+ ++   V+  M  R    
Sbjct: 399 GLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTI 458

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             V YN +I    +   +        +M  +G KP+  TY SL+    K   + ++D   
Sbjct: 459 NSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCK---VDRIDEAF 515

Query: 385 RQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           R   N      + +   +N +I A  + G  +K   L   M  R C  D IT+  +I+A+
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 442 NALGMTEAAQNLENKMIAMKENSGKKLIQC 471
             +G  E    L  +MI   +  G   I C
Sbjct: 576 CKVGNIEKGLELYEQMIM--DGLGADTISC 603



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 159/368 (43%), Gaps = 16/368 (4%)

Query: 98  LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS---DGLKPSVDVYTA 154
           L+IF  +  Q+ Y   C TF    V + K     +  L+ ++++    +G+     ++  
Sbjct: 96  LEIFERVGGQKGY---CHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMI 152

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++  YG++G   +A   + DM++V  C+P   +Y ++++     +   +   +  +M   
Sbjct: 153 IMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSK 212

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNI 272
           G+  +  T+  ++        F E++S+ S +  +   GC P+     ++I A      +
Sbjct: 213 GVSPTVFTFGIVMKALCM---FNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQV 269

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +  K   E  +MG   D+QT N +     +         ++D M  R F+P  +TY  +
Sbjct: 270 SEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL 329

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-NSD 391
           +    + G + +  +   K+      PN+    +L++ Y  +G + +  S L +   N  
Sbjct: 330 LHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              D   +N ++    + G +    +L   M  R C P+ IT+A ++      G+ E A 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAG 445

Query: 452 NLENKMIA 459
            + ++M A
Sbjct: 446 LVLHEMSA 453



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 2/229 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  LF  ML DG   +   Y  L+ A  + G   +A + +NDM
Sbjct: 497 TYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDM 556

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C  D  TY+ LIK+  K    +   ++  +M   G+    ++ N +I+G  K  K
Sbjct: 557 L-FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGK 615

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +         +  G   PDI T NS+++     G I++    ++   + GV+ D  T N
Sbjct: 616 VDNAFEFLRDAINRGFV-PDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYN 674

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                  + GM +          +  F P+ +T+N+++ T  K  + E 
Sbjct: 675 TFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 184/428 (42%), Gaps = 16/428 (3%)

Query: 16  HLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKN 75
           HL       V R+ ++  SP P++ L   +     L+ + R  FA+  +  ++ +  +++
Sbjct: 92  HLLAVALPVVLRLHSL--SPPPLRPL-FDRPFASLLAHLSR--FALAPLALRLFAHMHRH 146

Query: 76  LWPKPVLEALDEAIK----QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131
             P P     +  I+    +     AL+   L+ +  W +    TF  L+V   +  Q +
Sbjct: 147 APPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGW-RPDAYTFNSLIVGYCRTNQVD 205

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
            A  LF+ M   G    V  Y  L+    ++G +DEA     +M      +PD++ Y+ L
Sbjct: 206 VARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD-----QPDMHMYAAL 260

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +K      R +    +L  M  LG   S   Y  ++D   + +K +E E     M E G 
Sbjct: 261 VKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKG- 319

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P + T  ++I+AY   G +    +      L G K ++ T N L + +   G   K  
Sbjct: 320 LAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 379

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           ++++ M+     P  VTYN++I      GHIE      + M+  G+  +  TY +L++A 
Sbjct: 380 TLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 439

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G   +  S+   +E   +  +   FN +I+   ++G  +   +    M    C PD 
Sbjct: 440 CKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDT 499

Query: 432 ITFATMIQ 439
            T+++ I+
Sbjct: 500 YTYSSFIE 507



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 162/376 (43%), Gaps = 43/376 (11%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           +LR+ +    R  T     V+  +C++   ++A  + + M   GL P V   TA+++AY 
Sbjct: 276 MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 335

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           + G + +A   +  MK +  CKP+V+TY+ L++      +      +L +M   G+   A
Sbjct: 336 KEGRMSDALRVLELMK-LRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDA 394

Query: 221 VTYNTIIDGYGKAKKFEEMESSFS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           VTYN +I G         +ES+F    ++E  G   D +T N++I+A    G  ++    
Sbjct: 395 VTYNLLIRGQCIDG---HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 451

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYD-----------------------------K 309
           ++     G+K +  T N L     ++G  D                             K
Sbjct: 452 FDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 511

Query: 310 MR------SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           M+      S +  M ++   P+ V Y IVI    K  +   +   + +M   G  P+ +T
Sbjct: 512 MKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVT 571

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y + + AY   G + + +++L ++  + V +DT  +N ++  +   G  +    +   M 
Sbjct: 572 YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMT 631

Query: 424 ERHCVPDNITFATMIQ 439
               VP+  T+  +++
Sbjct: 632 SVASVPNQFTYFILLR 647



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 154/399 (38%), Gaps = 58/399 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + +QA  LF+ + + G+KP+   + +L++   +SG  D A+  +  M
Sbjct: 431 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 490

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S + C PD YTYS  I+   K          + EM    ++ S V Y  +I    K + 
Sbjct: 491 VS-AGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 549

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +  +  ++  MV SG C+PD+ T  + + AY   G + + E    E +  GV  D    N
Sbjct: 550 YGLVARTWGEMVSSG-CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 608

Query: 296 ILTKSYGRAGMYDKMRSVM----------------------------------------- 314
            L   +   G  D   S++                                         
Sbjct: 609 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 668

Query: 315 -----------DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
                      D M+K  F P   TY+ ++E F + G  E+       MK   +  N   
Sbjct: 669 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 728

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +LV+ + K+   +    ++  +     I     +  ++S     G  +K  E+F+  +
Sbjct: 729 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSR 788

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
            +   PD I +  +I       + +   ++  +MI M E
Sbjct: 789 WKDYSPDEIVWKVIIDGL----IKKGHSDISREMIIMLE 823



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 6/277 (2%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           ++ L+   ++F    L  ++ A M  +     +A TYN +I    +           S M
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           V SG   PD +T NS+I  Y  +  ++     +++  L G   D+ +   L +    AG 
Sbjct: 180 VRSGW-RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 238

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D+   +   M +    P +  Y  +++    A   E+     ++MK  G +P++  Y +
Sbjct: 239 IDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 294

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           +V    +     + + +L+++    +         +I+AY + G +     +   MK R 
Sbjct: 295 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 354

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           C P+  T+  ++Q +   G    A  L NKM A   N
Sbjct: 355 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN 391



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 109/259 (42%), Gaps = 30/259 (11%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E  ++L E M  +G+      Y  L+  +   G  D A S +  M SV+   P+ +TY I
Sbjct: 587 EAENVLME-MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASV-PNQFTYFI 644

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAV-----------------TYNTIIDGYGKA 233
           L++   +    + +  +     +  IE + V                 TY++I++G+ + 
Sbjct: 645 LLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSED 704

Query: 234 KKFEEMESSFSAMVE-SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKAD 290
            + EE  S  S M E S   + DI+T  ++++ +  S     ++ W    +++  G    
Sbjct: 705 GRTEEATSLVSLMKEDSISLNEDIYT--ALVTCFCKSKRY--LDAWVLVCSMIQHGFIPQ 760

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEY 348
           + +   L       G  DK + +  FM  R+  + P  + + ++I+   K GH +   E 
Sbjct: 761 LMSYQHLLSGLICEGQTDKAKEI--FMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 818

Query: 349 FKKMKHRGMKPNSITYCSL 367
              ++    +P+  TY  L
Sbjct: 819 IIMLERMNCRPSHQTYAML 837


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 162/361 (44%), Gaps = 17/361 (4%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W  A ++   + +++       T+  L+    K  +  +A  L++ ML  G+ PS   Y
Sbjct: 270 RWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITY 329

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           ++++  + +   LD A      M +   C PD+ T++ LI    +  R D   K+L EM+
Sbjct: 330 SSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 388

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+  + +TY T+I G+ +       +     MV SG C P++ T N+++    ++G +
Sbjct: 389 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVC-PNVVTCNTLLDGLCDNGKL 447

Query: 273 EKMEKWY-------------NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           +   + +             + FN  GV+ D+QT NIL       G + +   + + M  
Sbjct: 448 KDALEMFKAMQKSKMDIDASHPFN--GVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 505

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R   P  +TYN VI    K   +++  + F  M  +   PN +T+ +L++ Y KAG +  
Sbjct: 506 RGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 565

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +  ++    ++ +   +  +I  + + G++    ++F  M      PD IT   M+ 
Sbjct: 566 GLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLT 625

Query: 440 A 440
            
Sbjct: 626 G 626



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 169/389 (43%), Gaps = 55/389 (14%)

Query: 125 GKCKQPEQAS---LLFEVMLSDGLKPSVDVY-----TALVSAYGQSGLLDEAFSTINDMK 176
           G CK  +  S   LL ++     +KP+V ++     T +++ +  SG   EA   + +M 
Sbjct: 223 GMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEML 282

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                 PDV TY+ LI +  K  +F   E++  EM   GI  S +TY+++IDG+ K  + 
Sbjct: 283 ERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRL 342

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +  E  F  M  + GC PDI T N++I+ Y  +  ++   K  +E    G+ A+  T   
Sbjct: 343 DAAEHMFYLMA-TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 401

Query: 297 LTKSYGRAG------------------------------------------MYDKM-RSV 313
           L   + + G                                          M+  M +S 
Sbjct: 402 LIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 461

Query: 314 MDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           MD      F    P V TYNI+I      G   + EE +++M HRG+ P++ITY S++  
Sbjct: 462 MDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHG 521

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V +
Sbjct: 522 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 581

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIA 459
            IT+ T+I  +  +G    A ++  +M+A
Sbjct: 582 AITYITLIHGFRKVGNINGALDIFQEMMA 610



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 156/367 (42%), Gaps = 20/367 (5%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L R+ +  +  C   +FT LM     C +   A   F  +   G  P+V  ++ L+ 
Sbjct: 97  VISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLH 156

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA    + M     CKP+V T++ L+    +  R      +L  M   G++
Sbjct: 157 GLCVEDRISEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQ 211

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL-----NSMISAYGNSGNI 272
            + +TY TI+DG  K        +    M E     P++          MI+ + +SG  
Sbjct: 212 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRW 271

Query: 273 EKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            + ++   E      +  D+ T N L  ++ + G + +   + D M  R   P+ +TY+ 
Sbjct: 272 SEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSS 331

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+ F K   ++  E  F  M  +G  P+ IT+ +L++ Y +A  +     +L ++  + 
Sbjct: 332 MIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG 391

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-------NAL 444
           ++ +T  +  +I  + Q GD+    +L   M      P+ +T  T++          +AL
Sbjct: 392 LVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDAL 451

Query: 445 GMTEAAQ 451
            M +A Q
Sbjct: 452 EMFKAMQ 458



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 151/390 (38%), Gaps = 81/390 (20%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F      Q  +    TFT LM  L +  +  +A  L + ML DGL+P+   Y  +V
Sbjct: 167 ALDLF-----HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIV 221

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G    A + +  M+ VS  KP+V  + +  ++C                     
Sbjct: 222 DGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTC--------------------- 260

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                    +I+G+  + ++ E +     M+E     PD+ T N++I+A+   G   + E
Sbjct: 261 ---------MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAE 311

Query: 277 KWYNE--------------------------------FNLMGVKA---DIQTLNILTKSY 301
           + Y+E                                F LM  K    DI T N L   Y
Sbjct: 312 ELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGY 371

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            RA   D    ++  M +       +TY  +I  F + G +   ++  ++M   G+ PN 
Sbjct: 372 CRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNV 431

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT--PF---------FNCIISAYGQAG 410
           +T  +L+      G +     + + ++ S + +D   PF         +N +IS     G
Sbjct: 432 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEG 491

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQA 440
              +  EL+  M  R  VPD IT+ ++I  
Sbjct: 492 KFLEAEELYEEMPHRGIVPDTITYNSVIHG 521



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 155/374 (41%), Gaps = 48/374 (12%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K  E A  LF  M+     PSV  +  L+    + G LD   S    M+ +     + Y+
Sbjct: 57  KGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKME-MRRVPCNAYS 115

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++IL+K      +         +++ LG   + VT++T++ G     +  E    F  M 
Sbjct: 116 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM- 174

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------- 290
               C P++ T  ++++     G + +     +     G++ +                 
Sbjct: 175 ----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 230

Query: 291 IQTLNILTK------------------------SYGRAGMYDKMRSVM-DFMQKRFFFPT 325
           +  LN+L K                         +  +G + + + ++ + ++++   P 
Sbjct: 231 VSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPD 290

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VVTYN +I  F K G   + EE + +M  RG+ P++ITY S++  + K   +   + +  
Sbjct: 291 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFY 350

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            +       D   FN +I+ Y +A  V+   +L   M E   V + IT+ T+I  +  +G
Sbjct: 351 LMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVG 410

Query: 446 MTEAAQNLENKMIA 459
              AAQ+L  +M++
Sbjct: 411 DLNAAQDLLQEMVS 424



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 128/316 (40%), Gaps = 21/316 (6%)

Query: 73  YKNLWPKPVLEA-------LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           Y  + P+ ++ +       +D   KQ +   A  +F L+   +       TF  L+    
Sbjct: 314 YDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPDIITFNTLIAGYC 372

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           + K+ +    L   M   GL  +   YT L+  + Q G L+ A   + +M S   C P+V
Sbjct: 373 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVC-PNV 431

Query: 186 YTYSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            T + L+   C      D +E           I A   + G+E    TYN +I G     
Sbjct: 432 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEG 491

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           KF E E  +  M   G   PD  T NS+I        +++  + ++         ++ T 
Sbjct: 492 KFLEAEELYEEMPHRG-IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 550

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y +AG  D    +   M +R      +TY  +I  F K G+I    + F++M  
Sbjct: 551 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMA 610

Query: 355 RGMKPNSITYCSLVSA 370
            G+ P++IT  ++++ 
Sbjct: 611 SGVYPDTITIRNMLTG 626



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 102/268 (38%), Gaps = 39/268 (14%)

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G+ + K  E+    F  MV S    P +     ++      G ++ +   + +  +  V 
Sbjct: 52  GFHEIKGLEDAIDLFGDMVRSRPL-PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVP 110

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY------------------- 329
            +  +  IL K +          S    + K  F PTVVT+                   
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 330 -------NIVIET-----FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
                  N+V  T       + G + +      +M   G++PN ITY ++V    K G  
Sbjct: 171 FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 230

Query: 378 MKVDSILRQVENSD------VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PD 430
           +   ++LR++E         VI       C+I+ +  +G   +  +L   M ER  + PD
Sbjct: 231 VSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPD 290

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMI 458
            +T+  +I A+   G    A+ L ++M+
Sbjct: 291 VVTYNALINAFVKEGKFFEAEELYDEML 318


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M++ G +P+V +YT L+  + Q+    +A   + +MK      PD++ Y+ LI   +K  
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R D     L EM   G++ +A TY   I GY +A +F   +     M E G   P+    
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG-VLPNKVLC 560

Query: 260 NSMISAYGNSGNI-----------------------------------EKMEKWYNEFNL 284
             +I+ Y   G +                                   +  E+ + E   
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+  D+ +  +L   + + G   K  S+ D M +    P V+ YN+++  F ++G IEK
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            +E   +M  +G+ PN++TYC+++  Y K+G + +   +  +++   ++ D+  +  ++ 
Sbjct: 681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              +  DVE+   +F T K + C      F  +I      G TE    + N+++
Sbjct: 741 GCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 166/356 (46%), Gaps = 12/356 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+T LM  L K  + + A  +F  M   G+ P V  Y  L++ + + G + +A S  ++
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P+V  Y++L+    +    +  +++L EMS  G+  +AVTY TIIDGY K+ 
Sbjct: 653 MVE-EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E    F  M +  G  PD F   +++       ++E+    +   N  G  +     
Sbjct: 712 DLAEAFRLFDEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPF 769

Query: 295 NILTK---SYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L      +G+  +  + +  +MD    RF  P  VTYNI+I+   K G++E  +E F 
Sbjct: 770 NALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFH 829

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M++  + P  ITY SL++ Y K G   ++  +  +   + +  D   ++ II+A+ + G
Sbjct: 830 QMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEG 889

Query: 411 DVEKMGELFLTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 461
              K   L   M  ++ V D       T   ++  +  +G  E A+ +   M+ ++
Sbjct: 890 MTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 150/344 (43%), Gaps = 2/344 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+  L K +  + A  L   M+S G+     +Y   +    + G++++A +  + 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M + S   P    Y+ LI+   +        ++L EM    I  S  TY T++ G   + 
Sbjct: 373 MIA-SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +   +    M+ SG C P++    ++I  +  +       +   E    G+  DI   
Sbjct: 432 DLDGAYNIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +A   D+ RS +  M +    P   TY   I  + +A      ++Y K+M+ 
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ PN +    L++ Y K G +++  S  R + +  ++ D   +  +++   +   V+ 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             E+F  M+ +   PD  ++  +I  ++ LG  + A ++ ++M+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTY +LI    K  R +  + +L EM  LG+     TY+ +IDG  K +  +  +  
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV S G +   +  +  I      G +EK +  ++     G+    Q    L + Y 
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R     +   ++  M+KR    +  TY  V++    +G ++      K+M   G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 363 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            Y +L+  +   S+ G  M+V   L++++   +  D   +N +I    +A  +++     
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 420 LTMKERHCVPDNITFATMIQAY 441
           + M E    P+  T+   I  Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 47/294 (15%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           M++ G C+  + E+A  L + M   GL P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725

Query: 179 SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 204
               PD + Y+ L+  C                                   KF + +L 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 205 EKILAEMSYLGIE----CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            ++L  +     +     + VTYN +ID   K    E  +  F  M ++    P + T  
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYT 844

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 321 FFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
                    ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY+ +IDG  K K+ E+ +S    M +S G   D  T + +I       N +  +   +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+       +       + G+ +K +++ D M      P    Y  +IE + +  +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +  E   +MK R +  +  TY ++V     +G +    +I++++  S    +   +  
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 459
           +I  + Q         +   MKE+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512

Query: 460 MKENSGK 466
           M EN  K
Sbjct: 513 MVENGLK 519


>gi|326487288|dbj|BAJ89628.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 461

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  L   M  DG+  +   Y  L+ AY ++G L++++  + +MK     + D   YS L+
Sbjct: 141 ADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWG-IRLDTAGYSTLV 199

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           +       +     ++ EM  +G+E     YN +ID +GK  +  +    F  M    G 
Sbjct: 200 RLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM-RGQGI 258

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PDI T N++I  +   GN+++  ++       G+  D +    +    G  G +D+++ 
Sbjct: 259 KPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDELKE 318

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           + D M+ R F  +   Y ++++ +G+ GH    +E    +K   ++ +   +C L +AY+
Sbjct: 319 LFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYA 378

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + GL  +  S+L+ +E   +  +    N +I+A+  AG   +   +F  +K+    PD +
Sbjct: 379 QQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVV 438

Query: 433 TFATMIQAY 441
           T+ T+++A+
Sbjct: 439 TYTTLMKAF 447



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 151/350 (43%), Gaps = 35/350 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L   M + G++PS   Y  L+ A  ++G   EA + + +M+ +   +PD   Y+ L++  
Sbjct: 74  LLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLG-LRPDAAHYNALLEGL 132

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------EME-------- 240
                  L +++L +M+  G+  +  TY  ++D Y +A + E       EM+        
Sbjct: 133 LARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDT 192

Query: 241 SSFSAMV----ESG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           + +S +V    +SG               G   D+   N +I  +G  G +    K + +
Sbjct: 193 AGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEK 252

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+K DI+T N L + + R G   +    +  MQ+   +P    +  +I   G+ G 
Sbjct: 253 MRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGK 312

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            ++++E F KM++RG K +   Y  LV  Y + G        +  ++  ++ L    F  
Sbjct: 313 WDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCV 372

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           + +AY Q G  E+   +   M+     P+ +    +I A++  G    AQ
Sbjct: 373 LANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQ 422



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 12/248 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A+ L   M   G++  V +Y  L+  +G+ G L +A      M+     KPD+ T++ 
Sbjct: 209 KKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRG-QGIKPDIETWNA 267

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--- 247
           LI+   +        + LA M   G+      + TII+  G+  K++E++  F  M    
Sbjct: 268 LIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDELKELFDKMRNRG 327

Query: 248 --ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
             ESG  +        ++  YG  G+    ++         ++       +L  +Y + G
Sbjct: 328 FKESGAIYA------VLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQG 381

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + ++  SV+  M+     P +V  N++I  F  AG   + +  F+ +K  GM P+ +TY 
Sbjct: 382 LCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYT 441

Query: 366 SLVSAYSK 373
           +L+ A+ +
Sbjct: 442 TLMKAFMR 449



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 36/281 (12%)

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++LA+M   G+  SA  Y  +I    +A +  E E+    M    G  PD    N+++  
Sbjct: 73  QLLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEM-RHLGLRPDAAHYNALLEG 131

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA--------------------- 304
                ++   ++   +    GV  + +T  +L  +Y RA                     
Sbjct: 132 LLARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLD 191

Query: 305 --------------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
                         GM+ K   ++  MQ+      V  YN +I+TFGK G +    + F+
Sbjct: 192 TAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFE 251

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           KM+ +G+KP+  T+ +L+  + + G + +    L  ++   +  D   F  II+  G+ G
Sbjct: 252 KMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQG 311

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
             +++ ELF  M+ R        +A ++  Y   G    AQ
Sbjct: 312 KWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQ 352



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           MQ     P+   Y  +I    +AG   + E    +M+H G++P++  Y +L+        
Sbjct: 78  MQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLLARAH 137

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           +   D +L Q+ +  V  +   +  ++ AY +AG +E    +   MK      D   ++T
Sbjct: 138 LRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYST 197

Query: 437 MIQAYNALGMTEAAQNL 453
           +++ Y   GM + A +L
Sbjct: 198 LVRLYRDSGMWKKATDL 214



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++        L ++  RAG   +  +++  M+     P    YN ++E      H+   
Sbjct: 82  GMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLLARAHLRLA 141

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +    +M   G+  N  TY  L+ AY++AG +     +L +++   + LDT  ++ ++  
Sbjct: 142 DRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVRL 201

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           Y  +G  +K  +L + M+E     D   +  +I  +   G    A+ +  KM
Sbjct: 202 YRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM 253


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 140/278 (50%), Gaps = 3/278 (1%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++Q  ++    T+T ++ +LG+ +Q      L + M     KP+V  Y  +
Sbjct: 342 VALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRI 401

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG++  L EA     +M+  +  +PD  TY  LI    K    D+   +   M  +G
Sbjct: 402 IHAYGRANYLKEAVKVFEEMQE-AGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVG 460

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +++  GK  +       F  M+E+ GC P++ T N MI+    + N E +
Sbjct: 461 LSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIEN-GCTPNLVTYNIMIALQAKARNYENV 519

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K Y +  + G + D  T +I+ +  G  G  D+  +V   M +R + P    Y ++++ 
Sbjct: 520 VKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEM-RRDWAPDEPVYGLLVDL 578

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +GKAG+++K   +++ M   G++PN  T  SL+SA+ K
Sbjct: 579 WGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLK 616



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 127/260 (48%), Gaps = 2/260 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ +I    +  +F +++++L EMS    + + VTYN II  YG+A   +E   
Sbjct: 357 KHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVK 416

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M E+ G  PD  T  ++I  +  +G ++     Y     +G+  D  T +++    
Sbjct: 417 VFEEMQEA-GYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCL 475

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+ G       +   M +    P +VTYNI+I    KA + E + + +K M+  G +P+ 
Sbjct: 476 GKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDK 535

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  ++      G + + +++  ++   D   D P +  ++  +G+AG+V+K    +  
Sbjct: 536 ITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYQA 594

Query: 422 MKERHCVPDNITFATMIQAY 441
           M +    P+  T  +++ A+
Sbjct: 595 MLQDGLQPNVPTCNSLLSAF 614



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G K D  T   +    G+A  +  ++ ++D M +    PTVVTYN +I  +G+A ++++ 
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEA 414

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F++M+  G +P+ +TYC+L+  ++KAG +     +  +++   +  DT  ++ +++ 
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNC 474

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
            G+ G +    +LF  M E  C P+ +T+  MI       +   A+N EN
Sbjct: 475 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMI------ALQAKARNYEN 518



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 2/236 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T+I   G+A++F  ++     M  +  C P + T N +I AYG +  +++
Sbjct: 355 GFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAH-CKPTVVTYNRIIHAYGRANYLKE 413

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             K + E    G + D  T   L   + +AG  D    +   MQ+    P   TY++++ 
Sbjct: 414 AVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVN 473

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GK G +    + F +M   G  PN +TY  +++  +KA     V  + + ++ +    
Sbjct: 474 CLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRP 533

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           D   ++ ++   G  G +++   +F+ M+ R   PD   +  ++  +   G  + A
Sbjct: 534 DKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGKAGNVDKA 588


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 172/359 (47%), Gaps = 4/359 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR  +    R        ++ G CK    ++A  L+  M + G+ P V  YT L+  + 
Sbjct: 137 LLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFC 196

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G L EAF  +N+M  + +  P++YTY+ LI +  K  +    + +LA M+  G++   
Sbjct: 197 LAGQLMEAFGLLNEM-ILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDV 255

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           V Y+ ++DGY    + ++ +  F  MV++G  +PD+++ N +I+       +++      
Sbjct: 256 VIYSILMDGYCLVGEVQKAKQIFLVMVQTG-VNPDVYSYNIIINGLCKGKRVDEAMNLLR 314

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E     +  D  T + L     + G    +  +   M  R     +VTYN +++   K  
Sbjct: 315 EMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQ 374

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           +++K    F KMK RG++PN  TY +L+    K G + K  ++ + +      +D   + 
Sbjct: 375 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYT 434

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +IS   + G  ++   +   M++  C+P+ +TF  +I++       + A+ L ++MIA
Sbjct: 435 VMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIA 493



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 153/336 (45%), Gaps = 8/336 (2%)

Query: 122 VMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +M G C + E + SL F + +++ G +     Y  L++   + G   E    I  ++++ 
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIG---ETRCAIKLLRTIE 142

Query: 180 D--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           D   +PDV  YS +I    K    D    + +EM+  GI    +TY T+I G+  A +  
Sbjct: 143 DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM 202

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E     + M+     +P+I+T N++I      G +++ +         GVK D+   +IL
Sbjct: 203 EAFGLLNEMILKN-INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSIL 261

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
              Y   G   K + +   M +    P V +YNI+I    K   +++     ++M H+ M
Sbjct: 262 MDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P+++TY SL+    K G I  +  + +++ +     +   +N ++    +  +++K   
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIA 381

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           LF+ MKER   P+  T+  +I      G  +  Q L
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQAL 417



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 153/352 (43%), Gaps = 24/352 (6%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K       L + M + G+ P +   + L++ +   G +  +FS +  + 
Sbjct: 13  FGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKIL 72

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
            +   +P+    + L+K  C K        FH     +K++A+    G +   V+Y  ++
Sbjct: 73  KLGY-QPNTIILNTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMDQVSYGILL 122

Query: 228 DGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +G  K     E   +   +  +E     PD+   +++I        +++    Y+E N  
Sbjct: 123 NGLCK---IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNAR 179

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+  D+ T   L   +  AG   +   +++ M  +   P + TYN +I+T  K G +++ 
Sbjct: 180 GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKES 239

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +     M  +G+KP+ + Y  L+  Y   G + K   I   +  + V  D   +N II+ 
Sbjct: 240 KNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +   V++   L   M  ++ +PD +T++++I     LG      +L  +M
Sbjct: 300 LCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEM 351



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+  D+ TL+IL   +   G      SV+  + K  + P  +  N +++     G ++K 
Sbjct: 40  GIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKS 99

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
             +  K+  +G + + ++Y  L++   K G       +LR +E+     D   ++ II  
Sbjct: 100 LHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDG 159

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +   V++  +L+  M  R   PD IT+ T+I  +   G    A  L N+MI
Sbjct: 160 LCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMI 212



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K +    A+ +F +  +++  Q    T+T L+  L K  + ++   LF+ +L  G
Sbjct: 367 LDGLCKNQNLDKAIALF-MKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKG 425

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
               V  YT ++S   + G+ DEA +  + M+  + C P+  T+ I+I+S  +    D  
Sbjct: 426 YCIDVWTYTVMISGLCKEGMFDEALAMKSKMED-NGCIPNAVTFEIIIRSLLEKDENDKA 484

Query: 205 EKILAEMSYLGI--------ECSAVTYNTIID 228
           EK+L EM   G+        E S+VT   I++
Sbjct: 485 EKLLHEMIAKGLLPFRNFHSERSSVTNKVIVN 516



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 1/139 (0%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           A   T+  L+  L K +  ++A  LF  M   G++P+   YTAL+    + G L +  + 
Sbjct: 358 ANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQAL 417

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
              +     C  DV+TY+++I    K   FD    + ++M   G   +AVT+  II    
Sbjct: 418 FQHLLVKGYC-IDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLL 476

Query: 232 KAKKFEEMESSFSAMVESG 250
           +  + ++ E     M+  G
Sbjct: 477 EKDENDKAEKLLHEMIAKG 495


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 5/348 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++ +L K  + ++A     +M S G+KP++  Y  LV  Y   G ++ A   I++M
Sbjct: 228 TFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEM 287

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           KS    +PD+ TY+ ++       R     ++L EM  +G+   +V+YN +I G      
Sbjct: 288 KS-KGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGD 343

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E   +    MV+ G   P  +T N++I        IE  E    E    G+  D  T N
Sbjct: 344 LETAFAYRDEMVKQGMV-PTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 402

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+   Y + G   K  ++ D M      PT  TY  +I    +     + +E F+K+  +
Sbjct: 403 IVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGK 462

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           GMKP+ +   +L+  +   G + +  S+L++++  ++  D   +NC++      G  E+ 
Sbjct: 463 GMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEA 522

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            EL   MK R   PD+I++ T+I  Y+  G T+ A  + ++M+++  N
Sbjct: 523 RELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFN 570



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 165/416 (39%), Gaps = 41/416 (9%)

Query: 78  PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVML-GKCKQPEQASLL 136
           PK V + L E +  +K  +      L+      Q +       MV    + +  ++A   
Sbjct: 119 PKSVTQLLKEVVSTRKNSVRDLFDELVLAHDRLQTKSTILFDFMVRFYCQLRMVDEAIEC 178

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F +M   G  P  +    ++S   +   ++ A+    DM  + + K +VYT++I+I    
Sbjct: 179 FYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRM-EIKSNVYTFNIMINVLC 237

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K  +    +  L  M   GI+ + VTYNT++ GY    + E      S M +S G  PD+
Sbjct: 238 KEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEM-KSKGFQPDL 296

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
            T N ++S   N G   ++ +   E   +G+  D  + NIL +     G  +   +  D 
Sbjct: 297 QTYNPILSWMCNEGRASEVLR---EMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDE 353

Query: 317 MQKRFFFPTV-----------------------------------VTYNIVIETFGKAGH 341
           M K+   PT                                    VTYNIVI  + + G 
Sbjct: 354 MVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGD 413

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            +K      +M   G+KP   TY SL+    +     + D +  +V    +  D    N 
Sbjct: 414 AKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNT 473

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++  +   G++++   L   M   +  PD++T+  +++     G  E A+ L  +M
Sbjct: 474 LMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEM 529



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 73/338 (21%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           + + +Q   QT+  ++  +  C +   + +L E M   GL P    Y  L+     +G L
Sbjct: 288 KSKGFQPDLQTYNPILSWM--CNEGRASEVLRE-MKGIGLVPDSVSYNILIRGCSNNGDL 344

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           + AF+  ++M       P  YTY+ LI      ++ +  E ++ E+   GI   +VTYN 
Sbjct: 345 ETAFAYRDEMVK-QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 403

Query: 226 IIDGY---GKAKK----FEEM--------ESSFSAM-------------------VESGG 251
           +I+GY   G AKK     +EM        + +++++                   V   G
Sbjct: 404 VINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKG 463

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD+  +N+++  +  +GN+++      E + M +  D  T N L +     G +++ R
Sbjct: 464 MKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEAR 523

Query: 312 SVMDFMQKRF-----------------------------------FFPTVVTYNIVIETF 336
            +M  M++R                                    F PT++TYN +++  
Sbjct: 524 ELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGL 583

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
            K    E  EE  ++MK  G+ PN  ++CS++ A SK+
Sbjct: 584 SKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 158/343 (46%), Gaps = 8/343 (2%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG   +   Y      FT   +M G CK  + ++A  L + M   GLKP++ VY  LV  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G   EAF  + +M S    +P+   Y  LI+   K  +     K+L EM  +G+  
Sbjct: 358 FMKEGKTAEAFDILKEMISAG-VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRP 416

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKME 276
              TYN ++ G+ +     + + +F  + E  + G  P++++   MI+    +G  ++  
Sbjct: 417 DTFTYNPLMQGHFQQ---HDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E    G+K +      L   + + G        ++ M K    P +  YN +I+  
Sbjct: 474 NLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGL 533

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              G +E+ EEY+ +++ RG+ P+  TY  L+  Y K G + K D +LRQ+ NS +  + 
Sbjct: 534 STVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNA 593

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +  ++  Y ++ D EK+  +  +M      PDN  +  +I+
Sbjct: 594 DTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIR 636



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 6/352 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++  +    K +  + A  +FE M       +   Y  ++S   +SG ++EAF    +M
Sbjct: 245 TYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEM 304

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD +TY  L+    K  R    + +L EMS  G++ + V Y T++DG+ K  K
Sbjct: 305 VDYG-LSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E       M+ S G  P+    +++I      G + +  K   E   +G++ D  T N
Sbjct: 364 TAEAFDILKEMI-SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYN 422

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + + +    D    +++ M+     P V +Y I+I    + G  ++     ++M   
Sbjct: 423 PLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISE 482

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN+  Y  L+  +SK G I      L ++  ++V  D   +N +I      G +E+ 
Sbjct: 483 GLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEA 542

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467
            E +  +++R  VPD  T++ +I  Y   G  E A  L  +M+    NSG K
Sbjct: 543 EEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQML----NSGLK 590



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 156/343 (45%), Gaps = 2/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  L+  L K  Q  +AS L + M+  GL+P    Y  L+  + Q    D AF  +N+M+
Sbjct: 386 YDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMR 445

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + S   P+VY+Y I+I    +         +L EM   G++ +A  Y  +I G+ K    
Sbjct: 446 N-SGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNI 504

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                +   M ++   HPD+F  NS+I      G +E+ E++Y +    G+  D  T + 
Sbjct: 505 SLACEALEKMTKAN-VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSG 563

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   Y + G  +K   ++  M      P   TY  ++E + K+   EK+    + M   G
Sbjct: 564 LIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSG 623

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            KP++  Y  ++   S++  +     +L +VE + ++ D   ++ +IS   +  D+EK  
Sbjct: 624 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAV 683

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            L   M +    P  + +  +I  +   G    A+N+ + ++A
Sbjct: 684 GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 726



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 166/358 (46%), Gaps = 4/358 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL++      R  TFT   +M G  +Q ++  A  L   M + G+ P+V  Y  +++   
Sbjct: 405 LLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLC 464

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           Q+G   EA + + +M S    KP+ + Y+ LI   +K     L  + L +M+   +    
Sbjct: 465 QNGESKEAGNLLEEMIS-EGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDL 523

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             YN++I G     + EE E  + A V+  G  PD FT + +I  Y  +GN+EK ++   
Sbjct: 524 FCYNSLIKGLSTVGRMEEAEEYY-AQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLR 582

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +    G+K +  T   L + Y ++  Y+K+ S++  M      P    Y IVI    ++ 
Sbjct: 583 QMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE 642

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           ++E       +++  G+ P+   Y SL+S   K   + K   +L ++    +      +N
Sbjct: 643 NMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYN 702

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +I  + ++GD+ +   +F ++  +  VP+ +T+  +I      G    A +L  +M+
Sbjct: 703 ALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEML 760



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 172/395 (43%), Gaps = 40/395 (10%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +        ++  +++ G C+  E  +A  L E M+S+GLKP+  +Y  L+  
Sbjct: 438 FELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIG 497

Query: 159 YGQSG-------------------------LLDEAFSTINDMKSVSD---------CKPD 184
           + + G                          L +  ST+  M+   +           PD
Sbjct: 498 HSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPD 557

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
            +TYS LI    K    +  +++L +M   G++ +A TY  +++GY K+  +E++ S   
Sbjct: 558 EFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQ 617

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
           +M+ SG   PD      +I     S N+E       E    G+  D+   + L     + 
Sbjct: 618 SMLGSGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKI 676

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
              +K   ++D M K    P +V YN +I+ F ++G I +    F  +  +G+ PN +TY
Sbjct: 677 ADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTY 736

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+    K G I     + +++ +  +  D   +N + +    A D+E+   LFLT + 
Sbjct: 737 TALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQ--ALFLTEEM 794

Query: 425 RHCVPDNIT-FATMIQAYNALGMTEAAQNLENKMI 458
            +    N++ F T++  +   G  +  + L + M+
Sbjct: 795 FNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMM 829



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 149/358 (41%), Gaps = 47/358 (13%)

Query: 97  ALKIFGLLRQQQWYQARCQ-------TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKP 147
            L   G + + + Y A+ Q        FT   ++ G CK    E+A  L   ML+ GLKP
Sbjct: 532 GLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKP 591

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           + D YT L+  Y +S   ++  S +  M    D KPD + Y I+I++ ++    ++   +
Sbjct: 592 NADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD-KPDNHIYGIVIRNLSRSENMEVAFMV 650

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L E                                    VE  G  PD+   +S+IS   
Sbjct: 651 LTE------------------------------------VEKNGLVPDLHIYSSLISGLC 674

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              ++EK     +E    G++  I   N L   + R+G   + R+V D +  +   P  V
Sbjct: 675 KIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCV 734

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  +I+   K G I    + +K+M  RG+ P++  Y  L +  S A  + +   +  ++
Sbjct: 735 TYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEM 794

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            N     +   FN ++  + + G +++  +L   M +R  VP+  T   ++  +   G
Sbjct: 795 FNRGYA-NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAG 851



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 138/336 (41%), Gaps = 19/336 (5%)

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
           P+   LL +++L+    P       LV A  Q  + D       D +S S   P      
Sbjct: 132 PQANGLLHQMILAHPHPP-------LVLASIQRAIQD------TDHRSRSP-SPSTAVLD 177

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
           +L+ +  K        +++  M+ LG+  +    N ++    +A   E +       +E 
Sbjct: 178 VLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELL-WKLKGFMEG 236

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  PD++T ++ I A+  + + +  +K + E        +  T N++     R+G  ++
Sbjct: 237 AGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 296

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
                + M      P   TY  ++    K   +++ +    +M   G+KPN + Y +LV 
Sbjct: 297 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVD 356

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            + K G   +   IL+++ ++ V  +   ++ +I    + G + +  +L   M +    P
Sbjct: 357 GFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRP 416

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           D  T+  ++Q +      + A  L N+M     NSG
Sbjct: 417 DTFTYNPLMQGHFQQHDKDGAFELLNEM----RNSG 448


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M++ G +P+V +YT L+  + Q+    +A   + +MK      PD++ Y+ LI   +K  
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R D     L EM   G++ +A TY   I GY +A +F   +     M E G   P+    
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG-VLPNKVLC 560

Query: 260 NSMISAYGNSGNI-----------------------------------EKMEKWYNEFNL 284
             +I+ Y   G +                                   +  E+ + E   
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+  D+ +  +L   + + G   K  S+ D M +    P V+ YN+++  F ++G IEK
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            +E   +M  +G+ PN++TYC+++  Y K+G + +   +  +++   ++ D+  +  ++ 
Sbjct: 681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              +  DVE+   +F T K + C      F  +I      G TE    + N+++
Sbjct: 741 GCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 166/356 (46%), Gaps = 12/356 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+T LM  L K  + + A  +F  M   G+ P V  Y  L++ + + G + +A S  ++
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P+V  Y++L+    +    +  +++L EMS  G+  +AVTY TIIDGY K+ 
Sbjct: 653 MVE-EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E    F  M +  G  PD F   +++       ++E+    +   N  G  +     
Sbjct: 712 DLAEAFRLFDEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPF 769

Query: 295 NILTK---SYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L      +G+  +  + +  +MD    RF  P  VTYNI+I+   K G++E  +E F 
Sbjct: 770 NALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFH 829

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M++  + P  ITY SL++ Y K G   ++  +  +   + +  D   ++ II+A+ + G
Sbjct: 830 QMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEG 889

Query: 411 DVEKMGELFLTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 461
              K   L   M  ++ V D       T   ++  +  +G  E A+ +   M+ ++
Sbjct: 890 MTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 150/344 (43%), Gaps = 2/344 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+  L K +  + A  L   M+S G+     +Y   +    + G++++A +  + 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M + S   P    Y+ LI+   +        ++L EM    I  S  TY T++ G   + 
Sbjct: 373 MIA-SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +   +    M+ SG C P++    ++I  +  +       +   E    G+  DI   
Sbjct: 432 DLDGAYNIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +A   D+ RS +  M +    P   TY   I  + +A      ++Y K+M+ 
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ PN +    L++ Y K G +++  S  R + +  ++ D   +  +++   +   V+ 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             E+F  M+ +   PD  ++  +I  ++ LG  + A ++ ++M+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTY +LI    K  R +  + +L EM  LG+     TY+ +IDG  K +  +  +  
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV S G +   +  +  I      G +EK +  ++     G+    Q    L + Y 
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R     +   ++  M+KR    +  TY  V++    +G ++      K+M   G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 363 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            Y +L+  +   S+ G  M+V   L++++   +  D   +N +I    +A  +++     
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 420 LTMKERHCVPDNITFATMIQAY 441
           + M E    P+  T+   I  Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 47/294 (15%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           M++ G C+  + E+A  L + M   GL P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725

Query: 179 SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 204
               PD + Y+ L+  C                                   KF + +L 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 205 EKILAEMSYLGIE----CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            ++L  +     +     + VTYN +ID   K    E  +  F  M ++    P + T  
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYT 844

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 321 FFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
                    ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY+ +IDG  K K+ E+ +S    M +S G   D  T + +I       N +  +   +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+       +       + G+ +K +++ D M      P    Y  +IE + +  +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +  E   +MK R +  +  TY ++V     +G +    +I++++  S    +   +  
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 459
           +I  + Q         +   MKE+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512

Query: 460 MKENSGK 466
           M EN  K
Sbjct: 513 MVENGLK 519


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 9/342 (2%)

Query: 115 QTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             FT   ++ G C+  E  QA  L E M +  +  +  +Y  +++   + G   EA   +
Sbjct: 3   NAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLL 62

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-- 230
           + M + S C PD+YTY+ILI +  K  R +  + ++  M         VTYNT+I G   
Sbjct: 63  HSMATTS-CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCR 121

Query: 231 -GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
            G  + + E     F  MV+ G   P   T   +I A       E+ +K  +  +  G  
Sbjct: 122 KGNGRFRVERAFRLFEEMVDKGHT-PTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCA 180

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ T N+L   + +AGM DK   +   M  R   P VVTYN V++ F KAG +E+  + 
Sbjct: 181 FDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKL 240

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F +MK RG+ PN  TY S+  A  KAG +    + L ++    ++ D   +  +IS   +
Sbjct: 241 FAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTICK 299

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            G  +   +L   M E+   P+ +TF  + +A +    T+ A
Sbjct: 300 LGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 341



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 115/247 (46%), Gaps = 5/247 (2%)

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + +A TY+TI+ GY +  +  +  +    M ++     +    N +++     G  ++  
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHM-KNAEVPANAKLYNIILTHLCKHGKEKEAL 59

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
              +         DI T NIL  +  + G  +  + +++ MQ R     +VTYN +I   
Sbjct: 60  DLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGL 119

Query: 337 GKAGH----IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
            + G+    +E+    F++M  +G  P S+TY  ++ A  +  +  +   +L  +  +  
Sbjct: 120 CRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGC 179

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             D   +N +I+ + +AG ++K  +LF+ M  R C+PD +T+ +++  +   G  E A  
Sbjct: 180 AFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANK 239

Query: 453 LENKMIA 459
           L  +M A
Sbjct: 240 LFAEMKA 246


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 185/398 (46%), Gaps = 27/398 (6%)

Query: 85  LDEAIKQKKWQLALKIFGLL-----------RQQQWYQ--------ARCQTFTKLMVMLG 125
           L EA+K+K +   + ++G L           R ++ +         A   T++ L+  L 
Sbjct: 90  LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLC 149

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           +  Q ++A+ +   M   G+ P V  YT L+    + G    A   +N M    + +P  
Sbjct: 150 RLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE-EPSN 208

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
            TY++L+    K        KIL  M   G +   VTYNT++ G     K +E    F++
Sbjct: 209 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNS 268

Query: 246 MVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
           M ++  C  P++FT N +I      G + K  K + +    G   ++ T N+L     +A
Sbjct: 269 MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA 328

Query: 305 GMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G   K++  M+  ++     F P   TY+I+I+ F K   +   +  F +M+  G+ P  
Sbjct: 329 G---KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPAL 385

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y +L+++  K G + +  S+ +++ N++   D   FN +I    +AGD + + EL + 
Sbjct: 386 FDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMK 445

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M E    PD +TF+T+I   + LG  + A++   +M+A
Sbjct: 446 MVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 483



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 161 QSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           ++G + EA   I +M  KSVS   PD+ +Y+ LI    K  +      +L EM   G   
Sbjct: 10  RNGGVFEAMGLIREMGRKSVS---PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFP 66

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           ++VT  T++DG  K  + +E      AM +  G   D+    ++IS + N+GN+++ ++ 
Sbjct: 67  NSVTCTTLMDGLCKDGRMDEAMELLEAM-KKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           ++E    G+ A++ T + L     R G + +  +V++ M +    P VVTY  +I+   K
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G      +    M  +G +P+++TY  L+S   K GL++    ILR +       D   
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVT 245

Query: 399 FNCIISAYGQAGDVEKMGELFLTM-KERHCV-PDNITFATMIQAYNALGMTEAAQNLENK 456
           +N ++      G V++  +LF +M    +C+ P+  TF  +I      G    A  +  K
Sbjct: 246 YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRK 305

Query: 457 MI 458
           M+
Sbjct: 306 MV 307



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 4/327 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF+ ML  G+  +V  Y+ LV    + G   EA + +N M       PDV TY+ LI   
Sbjct: 125 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE-HGIHPDVVTYTGLIDGL 183

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R      +L  M   G E S VTYN ++ G  K     +       M+E G    D
Sbjct: 184 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-KAD 242

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEF--NLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           + T N+++    + G +++  K +N    N   ++ ++ T N+L     + G   K   +
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              M K+     +VTYN+++    KAG I++  E +K++   G  PNS TY  L+  + K
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
             ++     +  ++    +      +N ++++  + G +E+   LF  M   +C PD I+
Sbjct: 363 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 422

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAM 460
           F TMI      G  +  + L+ KM+ M
Sbjct: 423 FNTMIDGTLKAGDFQFVKELQMKMVEM 449



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 145/317 (45%), Gaps = 4/317 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 181
           G CK+     A  +  +M+  G K  V  Y  L+      G +DEA    N M    +C 
Sbjct: 217 GLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL 276

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +P+V+T+++LI    K  R     KI  +M   G   + VTYN ++ G  KA K +E   
Sbjct: 277 EPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAME 336

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            +  +++ G   P+ FT + +I  +     +   +  + E    G+   +   N L  S 
Sbjct: 337 LWKQVLDLGFV-PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G  ++ +S+   M      P ++++N +I+   KAG  + ++E   KM   G++P++
Sbjct: 396 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 455

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +T+ +L++  SK G + +  S L ++  S    D   ++ ++      GD  ++  L   
Sbjct: 456 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQ 515

Query: 422 MKERHCVPDNITFATMI 438
           M  +  V D    +T++
Sbjct: 516 MAAKGTVLDRKIVSTIL 532



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           +NI+ K   R G   +   ++  M ++   P +V+YN +I    KA  +++      +M+
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  PNS+T  +L+    K G + +   +L  ++      D   +  +IS +   G+++
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  ELF  M  +    + +T++ ++     LG  + A  + N M
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM 164



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 83/204 (40%)

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           +N ++     +G + +      E     V  DI + N L     +A    +   ++  M+
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
               FP  VT   +++   K G +++  E  + MK +G   + + Y +L+S +   G + 
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  ++    +  +   ++C++    + G  ++   +   M E    PD +T+  +I
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 439 QAYNALGMTEAAQNLENKMIAMKE 462
                 G    A +L N M+   E
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGE 204


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 36/353 (10%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M++ G +P+V +YT L+  + Q+    +A   + +MK      PD++ Y+ LI   +K  
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------- 250
           R D     L EM   G++ +A TY   I GY +A +F   +     M E G         
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 251 -------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
                                    G   D  T   +++    +  ++  E+ + E    
Sbjct: 562 GLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+  D+ +  +L   + + G   K  S+ D M +    P V+ YN+++  F ++G IEK 
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           +E   +M  +G+ PN++TYC+++  Y K+G + +   +  +++   ++ D+  +  ++  
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +  DVE+   +F T K + C      F  +I      G TE    + N+++
Sbjct: 742 CCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 166/356 (46%), Gaps = 12/356 (3%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T+T LM  L K  + + A  +F  M   G+ P V  Y  L++ + + G + +A S  ++
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M       P+V  Y++L+    +    +  +++L EMS  G+  +AVTY TIIDGY K+ 
Sbjct: 653 MVE-EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E    F  M +  G  PD F   +++       ++E+    +   N  G  +     
Sbjct: 712 DLAEAFRLFDEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPF 769

Query: 295 NILTK---SYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           N L      +G+  +  + +  +MD    RF  P  VTYNI+I+   K G++E  +E F 
Sbjct: 770 NALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFH 829

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M++  + P  ITY SL++ Y K G   ++  +  +   + +  D   ++ II+A+ + G
Sbjct: 830 QMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEG 889

Query: 411 DVEKMGELFLTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 461
              K   L   M  ++ V D       T   ++  +  +G  E A+ +   M+ ++
Sbjct: 890 MTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 149/344 (43%), Gaps = 2/344 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T++ L+  L K +  + A  L   M+S G+     +Y   +    + G++++A +  + 
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M + S   P    Y+ LI+   +        ++L EM    I  S  TY T++ G   + 
Sbjct: 373 MIA-SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +   +    M+ SG C P++    ++I  +  +       +   E    G+  DI   
Sbjct: 432 DLDGAYNIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +A   D+ RS +  M +    P   TY   I  + +A      ++Y K+M+ 
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G+ PN +    L++ Y K   +++  S  R + +  ++ D   +  +++   +   V+ 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             E+F  M+ +   PD  ++  +I  ++ LG  + A ++ ++M+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  YTY +LI    K  R +  + +L EM  LG+     TY+ +IDG  K +  +  +  
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV S G +   +  +  I      G +EK +  ++     G+    Q    L + Y 
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R     +   ++  M+KR    +  TY  V++    +G ++      K+M   G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 363 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            Y +L+  +   S+ G  M+V   L++++   +  D   +N +I    +A  +++     
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 420 LTMKERHCVPDNITFATMIQAY 441
           + M E    P+  T+   I  Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 47/294 (15%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           M++ G C+  + E+A  L + M   GL P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725

Query: 179 SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 204
               PD + Y+ L+  C                                   KF + +L 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 205 EKILAEMSYLGIE----CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
            ++L  +     +     + VTYN +ID   K    E  +  F  M ++    P + T  
Sbjct: 786 TEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITYT 844

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 321 FFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
                    ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY+ +IDG  K K+ E+ +S    M +S G   D  T + +I       N +  +   +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+       +       + G+ +K +++ D M      P    Y  +IE + +  +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +  E   +MK R +  +  TY ++V     +G +    +I++++  S    +   +  
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 459
           +I  + Q         +   MKE+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512

Query: 460 MKENSGK 466
           M EN  K
Sbjct: 513 MVENGLK 519


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 3/346 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T+  LM    +  +P+     F  +L  GL     + + L+    ++    EA   +  
Sbjct: 109 HTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLH 168

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGK 232
                 C PDV++Y I++KS     +    +++L  M+  G  C  +AV YNT+IDG+ K
Sbjct: 169 RMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFK 228

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
                +    F+ MV+ G   PD+ T N +++A   +  ++K E    +    GV  D  
Sbjct: 229 EGDVNKACDLFNEMVQRG-ISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNW 287

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   Y   G + +   V   M  +   P VVT N ++ +  K G I+   + F  M
Sbjct: 288 TYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSM 347

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G K +  +Y  +++ Y+  G ++ +  +   + +  +  D+  FN +I AY + G +
Sbjct: 348 AMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGML 407

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++   +F  M+E+   PD +T++T+I A   +G  + A    N+MI
Sbjct: 408 DRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMI 453



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 156/370 (42%), Gaps = 16/370 (4%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQA--------------RCQTFTKLMVMLGKCK 128
           + +D+ +    W     I+G     QW +A                 T   LM  L K  
Sbjct: 276 QMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHG 335

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  +F+ M   G K  +  Y  +++ Y   G L +     N M S     PD + +
Sbjct: 336 KIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLS-DGIAPDSHIF 394

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++LIK+  K    D    I  EM   G+E   VTY+T+I    +  K ++    F+ M++
Sbjct: 395 NVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMID 454

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
            G   P I T + +I  +   G++ K +    +    G++ DI   N +  +  + G   
Sbjct: 455 QG-VAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVM 513

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
             +++ DF       P V+ YN +++ +   G +E     F  M   G++PN + Y +LV
Sbjct: 514 DAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLV 573

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
           + Y K G I +  S+ R++ +  +   T  +N I+    QAG        F  M E    
Sbjct: 574 NGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIA 633

Query: 429 PDNITFATMI 438
            D  T++ ++
Sbjct: 634 MDRYTYSIVL 643



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 172/379 (45%), Gaps = 15/379 (3%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFE 138
           +L  L EA   K+   AL I  LL +          F+  +V+   C  ++  QA  L  
Sbjct: 149 LLRGLCEA---KRTAEALDI--LLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLR 203

Query: 139 VMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKS 194
           +M   G    P+   Y  ++  + + G +++A    N+M  + +S   PD+ TY+ ++ +
Sbjct: 204 MMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGIS---PDLSTYNCVVNA 260

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K    D  E IL +M   G+     TYN++I GY    +++E     S  + S G  P
Sbjct: 261 LCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKE-AVRVSKKMTSQGILP 319

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+ TLNS++++    G I+     ++   + G K DI +  I+   Y   G    +  + 
Sbjct: 320 DVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELF 379

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M      P    +N++I+ + K G +++    F +M+ +G++P+ +TY ++++A  + 
Sbjct: 380 NLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRI 439

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +        Q+ +  V      ++ +I  +   GD+ K  +L L M  +   PD   F
Sbjct: 440 GKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCF 499

Query: 435 ATMIQAYNALGMTEAAQNL 453
             +I     LG    AQN+
Sbjct: 500 NFIINNLCKLGRVMDAQNI 518



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 154/328 (46%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  LF  M+  G+ P +  Y  +V+A  ++  +D+A + +  M       PD +TY+ L
Sbjct: 234 KACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVD-KGVLPDNWTYNSL 292

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I   +   ++    ++  +M+  GI    VT N+++    K  K ++    F +M   G 
Sbjct: 293 IYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQ 352

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              DIF+   M++ Y   G +  + + +N     G+  D    N+L K+Y + GM D+  
Sbjct: 353 -KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRAT 411

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            + + M+++   P VVTY+ VI    + G ++   E F +M  +G+ P+  TY  L+  +
Sbjct: 412 IIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGF 471

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G ++K   ++ Q+ N  +  D   FN II+   + G V     +F         P+ 
Sbjct: 472 CTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNV 531

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           + + T++  Y  +G  E A  + + M++
Sbjct: 532 MVYNTLMDGYCLVGKMENALRVFDVMVS 559



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 153/364 (42%), Gaps = 39/364 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF +MLSDG+ P   ++  L+ AY + G+LD A    N+M+     +PDV TYS +I + 
Sbjct: 378 LFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMRE-QGVEPDVVTYSTVIAAL 436

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 250
            +  + D   +   +M   G+  S  TY+ +I G+       + +     M+  G     
Sbjct: 437 CRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDI 496

Query: 251 GC-----------------------------HPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           GC                             HP++   N+++  Y   G +E   + ++ 
Sbjct: 497 GCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDV 556

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G++ ++     L   Y + G  D+  S+   +  +   P+   YNI++    +AG 
Sbjct: 557 MVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGR 616

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
               +  F +M   G+  +  TY  ++    K     +   + +++   +V +D    N 
Sbjct: 617 TVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNI 676

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +I+   Q   VE+  +LF ++     VP  +T++ M+      G+ E A ++ + M    
Sbjct: 677 MIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM---- 732

Query: 462 ENSG 465
           EN+G
Sbjct: 733 ENAG 736



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 6/281 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P ++TY IL+  CT+ HR  L      ++   G+    +  + ++ G  +AK+  E    
Sbjct: 106 PTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDI 165

Query: 243 FSAMVESGGCHPDIFT----LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               +   GC PD+F+    L S+ S    SG  +++ +   E   + +   +   N + 
Sbjct: 166 LLHRMPHLGCVPDVFSYCIVLKSLCSDR-KSGQADELLRMMAEGGAVCLPNAV-AYNTVI 223

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             + + G  +K   + + M +R   P + TYN V+    KA  ++K E   ++M  +G+ 
Sbjct: 224 DGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVL 283

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P++ TY SL+  YS  G   +   + +++ +  ++ D    N ++++  + G ++   ++
Sbjct: 284 PDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDV 343

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           F +M  +    D  ++  M+  Y   G       L N M++
Sbjct: 344 FDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLS 384



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 6/192 (3%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A + F  M   G+      Y+ ++    ++   DEA     ++ ++ + K D+ T +I+I
Sbjct: 620 AKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAM-NVKIDITTLNIMI 678

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
               +  R +  + + A +S  G+  S VTY+ ++    K    EE +  FS+M E+ GC
Sbjct: 679 AGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM-ENAGC 737

Query: 253 -HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+   LN ++        I +   + ++ +      D  T  +L   +   G     R
Sbjct: 738 EQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKG---TCR 794

Query: 312 SVMDFMQKRFFF 323
             + F+  ++ F
Sbjct: 795 EHIRFLPAKYHF 806


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 149/315 (47%), Gaps = 6/315 (1%)

Query: 127 CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CKQ     A  + E M + G  P V  Y  +VS    +    EA     +M    D KPD
Sbjct: 274 CKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVK-RDLKPD 332

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V++   LI    K ++ D   ++ + M  L IE S   YN +I G+ +A   ++     S
Sbjct: 333 VFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIIS 392

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M  + GC PDI T N +++ Y   G +EK EK   +    GV  D  + N L K   + 
Sbjct: 393 FM-RTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKT 451

Query: 305 GMYDKMRS-VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
              DK  + V D M+   F  TV + NI+I+ F K   ++   E FK+M ++GM+ +++T
Sbjct: 452 HQLDKAFAFVSDHMEVGGFCDTV-SCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVT 510

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L++     G     + +  Q+ N+ +  +   +N ++    + G  ++   +F  M 
Sbjct: 511 YGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMI 570

Query: 424 ERHCVPDNITFATMI 438
           ++   PD +TF T+I
Sbjct: 571 QKEVSPDTVTFNTLI 585



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 2/322 (0%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           +++ L+ G   +   Y+  +SA  QS  ++     + DM  +  C PD++  +I I    
Sbjct: 216 YDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLG-CSPDIWACNIYIYYLC 274

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K +R     +++ +M   G     VTY T++ G    KKF E    +  MV+     PD+
Sbjct: 275 KQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRD-LKPDV 333

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           F+  ++I     +  +++  +  +    + ++  +   N L   + RAG  DK   ++ F
Sbjct: 334 FSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISF 393

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+     P +VTYNI++  +   G +EK E+  +KM+  G+ P+  +Y  L+    K   
Sbjct: 394 MRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQ 453

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + K  + +          DT   N +I A+ +   V+   ELF  M  +    D +T+ T
Sbjct: 454 LDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGT 513

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           +I    ++G    A+ L  +M+
Sbjct: 514 LINGLFSVGYYNLAEELFEQML 535



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 150/318 (47%), Gaps = 4/318 (1%)

Query: 115 QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             F+   ++ G CK  + ++A  L   ML+  ++ SV +Y AL+S + ++G +D+A+  I
Sbjct: 332 DVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKII 391

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           + M++ + C+PD+ TY+IL+         +  EK++ +M   G+     +YN ++ G  K
Sbjct: 392 SFMRT-NGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCK 450

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             + ++  +  S  +E GG   D  + N +I A+  +  ++   + + E    G++AD  
Sbjct: 451 THQLDKAFAFVSDHMEVGG-FCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAV 509

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   L       G Y+    + + M      P V  YNI++    K GH ++ +  F  M
Sbjct: 510 TYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHM 569

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             + + P+++T+ +L+    K    ++  ++ + +    V  DT  F  +IS     G  
Sbjct: 570 IQKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKS 629

Query: 413 EKMGELFLTMKERHCVPD 430
               E++  M E   + D
Sbjct: 630 TLAYEVWEYMMENGIILD 647



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 5/278 (1%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y IL+    +  +FD + +   EM   G     V YN  I    K   F+ +E  +   +
Sbjct: 161 YRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCCFDLVEKYYDMAL 220

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
             G C    FT +  ISA   S  IE +++   + + +G   DI   NI      +    
Sbjct: 221 AKGFCLTP-FTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRL 279

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
                +++ M+ +   P VVTY  V+          +    +++M  R +KP+  +  +L
Sbjct: 280 PDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGAL 339

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +    K   + +   +  ++   D+ L    +N +IS + +AG ++K  ++   M+   C
Sbjct: 340 IFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGC 399

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            PD +T+  ++  Y  +GM E A+ L  KM    E SG
Sbjct: 400 EPDIVTYNILLNHYCTIGMMEKAEKLIRKM----ETSG 433



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 5/234 (2%)

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAY 266
           L E+  L +E   +  N ++ G   +    E    F    ES  G     F +  ++S  
Sbjct: 78  LVELERLDVELDPIVVNLVVRGLSDS----ETAVRFYWWAESRPGFDHSQFAIAYLVSLL 133

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              GN   + ++       GV        IL   Y RAG +D +    D M         
Sbjct: 134 FMDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFG 193

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           V YN  I    K    + +E+Y+     +G      TY   +SA  ++  I  V  +L  
Sbjct: 194 VDYNRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVD 253

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           ++      D    N  I    +   +    ++   M+ +   PD +T+ T++  
Sbjct: 254 MDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSG 307



 Score = 38.9 bits (89), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K KK + AL++F  +  +   QA   T+  L+  L        A  LFE ML+  
Sbjct: 480 IDAFCKTKKVKSALELFKEMGYKG-MQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQ 538

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFD 202
           + P+V++Y  ++    + G    A +  + M  K VS   PD  T++ LI    K  R  
Sbjct: 539 IDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVS---PDTVTFNTLIYWLGKRSRAI 595

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
               +  +M   G+E   +T+  +I G     K       +  M+E+G
Sbjct: 596 EALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENG 643


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 152/329 (46%), Gaps = 10/329 (3%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSVSDCKPDVYTYSIL 191
           L   ML+  LKP+  + TA +    +SG  +EA    F  +     V     +V T + L
Sbjct: 409 LIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGV-----NVATSNAL 463

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I    + +      K+L  M   G+E   +TYN +I G  KA K +E       M++ G 
Sbjct: 464 IHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRG- 522

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD+FT N  +  Y N G +E++    ++    G+K DI T   +   Y +A    K  
Sbjct: 523 FKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKAN 582

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             +  + K    P  V YN +I  +G+ G+I         MK+ G++P  +TY SL+   
Sbjct: 583 EYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWM 642

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
             AGL+ +V ++  Q    D+ L    +  II  + + G +++    F  M  R   P+ 
Sbjct: 643 CHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNK 702

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +T+ T++ AY+  G  E A  L ++M+++
Sbjct: 703 MTYTTLMFAYSKSGNKEEASKLFDEMVSL 731



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 149/287 (51%), Gaps = 2/287 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A+ + + M++ G++     Y  ++    ++  +DEA    +DM      KPD++T++I
Sbjct: 474 KEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIK-RGFKPDLFTFNI 532

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
            + +     + + I  +L +M   G++   VTY TIIDGY KAK   +     + ++++G
Sbjct: 533 FLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNG 592

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P+    N++I  YG +GNI       +     G++    T N L      AG+ +++
Sbjct: 593 -LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEV 651

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           ++V      +     V+ Y I+I+ F K G I++   YFK+M  RG+ PN +TY +L+ A
Sbjct: 652 KAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFA 711

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
           YSK+G   +   +  ++ +  ++ D+  +N +IS + +   ++KM E
Sbjct: 712 YSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVE 758



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 160/366 (43%), Gaps = 3/366 (0%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +  +A K+FG +R  +       T+T ++  L +  + + A  +   +   G++P+V  Y
Sbjct: 190 QLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTY 249

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             L+ A  +SG ++EAF     M      +P + T+ ILI    +  +F  +  +L EM 
Sbjct: 250 NVLMDALCKSGRVEEAFRLKGRMVE-GRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQ 308

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             GI  + V YN +I  + +     E    F  MV S G    + T N +  A    G +
Sbjct: 309 GFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMV-SKGIKQTVVTYNLIAKALCKEGEM 367

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           E  EK  +E  L G+       N +   + R  G  D +  ++  M  RF  P       
Sbjct: 368 EHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTA 427

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            I+   K+G  E+  E + ++  +G+  N  T  +L+    +   + +   +L+ + NS 
Sbjct: 428 CIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSG 487

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           V LD   +N +I    +A  +++  +L   M +R   PD  TF   +  Y  LG  E   
Sbjct: 488 VELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEIL 547

Query: 452 NLENKM 457
           +L ++M
Sbjct: 548 HLLDQM 553



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 9/260 (3%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+  F  + + G  PS+   + LV A G  G LD A     +M+      PDV+TY+ +
Sbjct: 158 RAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAM 217

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           IK+  +    D    +LAE+   GI+ + VTYN ++D   K+ + EE       MVE G 
Sbjct: 218 IKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVE-GR 276

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P I T   +IS         ++     E    G+  +    N +   + R G   +  
Sbjct: 277 VRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEAL 336

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL---V 368
            + D M  +    TVVTYN++ +   K G +E  E+   +M   GM    + +CSL   V
Sbjct: 337 KLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGM----MVHCSLFNSV 392

Query: 369 SAYSKAGLIMKVDSILRQVE 388
            A+   G   ++D +LR + 
Sbjct: 393 VAWHLRG-TGRLDLVLRLIR 411



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 4/238 (1%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALV 156
           +I  LL Q +    +    T   ++ G CK  +  +A+     ++ +GL+P+  +Y AL+
Sbjct: 545 EILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALI 604

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             YG++G + +A   ++ MK  +  +P   TY+ L+         + ++ + A+     I
Sbjct: 605 GGYGRNGNISDAIGILDTMK-YNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDI 663

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E   + Y  II G+ K  K +E    F  M  S G  P+  T  +++ AY  SGN E+  
Sbjct: 664 ELGVIGYTIIIQGFCKIGKIDEAVMYFKEM-HSRGIPPNKMTYTTLMFAYSKSGNKEEAS 722

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
           K ++E   +G+  D  + N L   +      DKM      M  +       +YN  ++
Sbjct: 723 KLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVD 780



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDK 309
           G  P I T + ++ A G  G ++   K + E  +   V  D+ T   + K+  RAG  D 
Sbjct: 170 GASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDA 229

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
             +++  +++    PTVVTYN++++   K+G +E+      +M    ++P+ +T+  L+S
Sbjct: 230 AFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILIS 289

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
             ++     +V ++L++++   +  +   +N +I  + + G   +  +LF  M  +    
Sbjct: 290 GLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQ 349

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKMI 458
             +T+  + +A    G  E A+ + ++M+
Sbjct: 350 TVVTYNLIAKALCKEGEMEHAEKILDEML 378



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 127/305 (41%), Gaps = 16/305 (5%)

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
           P  ++LL + +++D  + S+     LVS   +   L  A + I D    S C     T  
Sbjct: 91  PRVSTLLLQSLVAD--RASLPSARRLVSRLLRFNPLSVAAAAIAD----SHCTA---TAD 141

Query: 190 ILIKSCTKFHRFDLIEKI---LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           +L+++C        + +      E+S  G   S  T + +++  G   + +     F  M
Sbjct: 142 LLVRACLNSPAPGSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEM 201

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            +     PD+ T  +MI A   +G I+       E    G++  + T N+L  +  ++G 
Sbjct: 202 RDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGR 261

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            ++   +   M +    P++VT+ I+I    +     ++    ++M+  G+ PN + Y  
Sbjct: 262 VEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNE 321

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK----MGELFLTM 422
           ++  + + G   +   +  ++ +  +      +N I  A  + G++E     + E+ L  
Sbjct: 322 MIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAG 381

Query: 423 KERHC 427
              HC
Sbjct: 382 MMVHC 386



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++ G CK  + ++A + F+ M S G+ P+   YT L+ AY +SG  +EA    ++M S+
Sbjct: 672 IIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSL 731

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
               PD  +Y+ LI    +    D + +  AEMS   ++    +YN  +DG
Sbjct: 732 G-IVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDG 781


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 159/353 (45%), Gaps = 4/353 (1%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           + Y+    T+  ++  L +  +  +A   F+ M S G  P V  Y  L+ A  + G + E
Sbjct: 109 KGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAE 168

Query: 168 AFSTINDMKSVSDCK--PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           A+     M  ++D K  PD+ TY+ LI    +  + D   K+  ++   G     VTYN+
Sbjct: 169 AWGLFKTM-DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNS 227

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           I+ G  +    +E E  F  MV+SG C P+  T + ++S +   GN+ +  + Y E    
Sbjct: 228 ILLGLARKSNMDEAEEMFKKMVDSG-CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK 286

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
               D+   N +     +A   D    V++ M K    P VVTYNI+++   K   ++K 
Sbjct: 287 RFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E F  M   G  P+ ++Y  +++   K   +     +  ++    ++ D   FN ++  
Sbjct: 347 HELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDG 406

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +AG +++  +L   M E + +PD +T  T++        T+ A  L   M+
Sbjct: 407 LCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMV 459



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 155/354 (43%), Gaps = 4/354 (1%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++ ++    T++ ++  L K  +  +A  + E M   G+ P V  YT +V    ++G +D
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVD 62

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EA    + M     C  +   Y+ LI    K    +   K+L EM+  G E   +TYNTI
Sbjct: 63  EADELFHKMIE-RGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTI 121

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           + G  +  K  E +  F +M  S G  PD+   N ++ A    G + +    +   ++  
Sbjct: 122 LSGLCRMGKVSEAKQFFDSM-PSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 287 --VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
             V  D+ T N L   + R    D+   +   +  + + P  VTYN ++    +  ++++
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            EE FKKM   G  PN  TY  ++S + + G + +   +  ++       D    N +I 
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              +A  V+   ++   M +   VPD +T+  ++       + + A  L + M+
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMV 354



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 164/383 (42%), Gaps = 17/383 (4%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           +E  DEA+K  K  +A          + Y     T+  +++ L +    ++A  +F+ M+
Sbjct: 200 VEKTDEAMKLFKDVIA----------KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
             G  P+   Y+ ++S + + G +        +M       PDV   + +I    K  + 
Sbjct: 250 DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE-KRFSPDVLLCNAVIDMLCKAKKV 308

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           D   K+L EMS +G     VTYN ++DG  K    ++    FS MV++G C PDI + + 
Sbjct: 309 DDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG-CAPDIVSYSV 367

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++    +  +      ++      +  D+ T NIL     +AG  D+ + ++D M +  
Sbjct: 368 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN 427

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  VT   ++    +    ++    F+ M  +G   + + +  +++   + G + +  
Sbjct: 428 VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQAL 487

Query: 382 SILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              + +  SD     D   +  +++A  +AG V++  + F  M    C PD + + T++ 
Sbjct: 488 LFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMN 547

Query: 440 AYNALGMTEAAQNLENKMIAMKE 462
                G    A  L     AMKE
Sbjct: 548 GLRKQGRHIQADRLTQ---AMKE 567



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 16/281 (5%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVS 179
           ML K K+ + A  + E M   G  P V  Y  L+    ++ L+D+A   FST+ D    +
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD----N 356

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
            C PD+ +YS+++    K ++      +   M    +    VT+N ++DG  KA K +E 
Sbjct: 357 GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 416

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           +     M E     PD  T  +++         ++  + +      G  AD+   NI+  
Sbjct: 417 KDLLDVMSEHN-VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLA 475

Query: 300 SYGRAGMYDKMRSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
              R G   K+   + F +        F P VVTY  ++    +AG +++  +YF++M  
Sbjct: 476 GLCREG---KLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTG 532

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            G  P+ + Y +L++   K G  ++ D + + ++    + D
Sbjct: 533 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 2/211 (0%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD+ T +++IS    +G + +  +   E    GV  D+ T  I+     RAG  D+ 
Sbjct: 5   GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEA 64

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M +R      V YN +I    K  +IE+  +  ++M  +G +P++ITY +++S 
Sbjct: 65  DELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK--ERHCV 428
             + G + +       + +     D   +N ++ A  + G V +   LF TM   +R   
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVA 184

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           PD IT+ T+I  +  +  T+ A  L   +IA
Sbjct: 185 PDLITYNTLIDGFCRVEKTDEAMKLFKDVIA 215



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 115/250 (46%), Gaps = 3/250 (1%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M+  G E   VTY+TII G  K  K  E       M E  G +PD+ T   ++     +G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEK-GVNPDVATYTIIVDRLCRAG 59

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++ ++ +++    G  A+    N L     +    ++   +++ M  + + P  +TYN
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++    + G + + +++F  M  RG  P+ + Y  L+ A  K G + +   + + ++ +
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179

Query: 391 D--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           D  V  D   +N +I  + +    ++  +LF  +  +  +PD +T+ +++         +
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 239

Query: 449 AAQNLENKMI 458
            A+ +  KM+
Sbjct: 240 EAEEMFKKMV 249


>gi|357135236|ref|XP_003569217.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Brachypodium distachyon]
          Length = 644

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 165/351 (47%), Gaps = 5/351 (1%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           +KW    K+F  +++ +       +++     LG  +   +A  ++  +    ++  V V
Sbjct: 93  RKWDALSKVFRWMQEHEMLNV--ASYSSYFKYLGLSRNAARALQVYGSIQDQSIRVHVSV 150

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAE 210
             +++    ++G  D  F   ++M       PD++TYS L+  C K  + +    +++ E
Sbjct: 151 CNSVLGCLVKNGRYDSTFKLYDEMIR-GGLSPDLFTYSTLLSGCIKLKQGYAKAMELINE 209

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           ++Y G++  +V Y T++         EE E  F  + + G  +P++F  +S+++AY  + 
Sbjct: 210 LNYRGLQMDSVIYGTLLAICASHNYCEEAEVYFQKLKDEGH-NPNLFHYSSLLNAYSENS 268

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N EK E    +     +  +   L  L K Y + G+++K + ++  ++   F    + Y 
Sbjct: 269 NYEKAELLMKDLRSSKLIPNKVILTTLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYC 328

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I+I+   K G I +    F +MK +G+K +   +  ++SA  +AG   +   + ++ E+ 
Sbjct: 329 ILIDALAKGGKIWEATMLFNEMKEKGVKSDGYAFSIMISALHRAGYREEAKQLAKEFEDQ 388

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +   D    N  + AY    D E +  +   M E +  PD+ITF T+I+ +
Sbjct: 389 NTTYDLVILNTSLRAYCNTNDTESVMRMLKKMDELNISPDHITFNTLIRYF 439



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A + F+ +  +G  P++  Y++L++AY ++   ++A   + D++S S   P+    + 
Sbjct: 236 EEAEVYFQKLKDEGHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRS-SKLIPNKVILTT 294

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+K  +K   F+  +++L E+   G     + Y  +ID   K  K  E    F+ M E G
Sbjct: 295 LLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKG 354

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
               D +  + MISA   +G  E+ ++   EF       D+  LN   ++Y      + +
Sbjct: 355 -VKSDGYAFSIMISALHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESV 413

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETF--GKAGHI 342
             ++  M +    P  +T+N +I  F  GK  H+
Sbjct: 414 MRMLKKMDELNISPDHITFNTLIRYFCKGKVYHL 447



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 110/267 (41%), Gaps = 2/267 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL+    +Y  L++        +EA      +K      P+++ YS L+ + ++   ++ 
Sbjct: 214 GLQMDSVIYGTLLAICASHNYCEEAEVYFQKLKDEGH-NPNLFHYSSLLNAYSENSNYEK 272

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            E ++ ++    +  + V   T++  Y K   FE+ +   + + E+ G   D      +I
Sbjct: 273 AELLMKDLRSSKLIPNKVILTTLLKVYSKGGLFEKAKELLTEL-EASGFAQDEMPYCILI 331

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A    G I +    +NE    GVK+D    +I+  +  RAG  ++ + +    + +   
Sbjct: 332 DALAKGGKIWEATMLFNEMKEKGVKSDGYAFSIMISALHRAGYREEAKQLAKEFEDQNTT 391

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             +V  N  +  +      E +    KKM    + P+ IT+ +L+  + K  +   V   
Sbjct: 392 YDLVILNTSLRAYCNTNDTESVMRMLKKMDELNISPDHITFNTLIRYFCKGKVYHLVYKT 451

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAG 410
           +  +      L+    + ++   G+AG
Sbjct: 452 IEDMHTKGHQLNEELCSEVMLQLGEAG 478


>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
 gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
          Length = 429

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 150/302 (49%), Gaps = 2/302 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  DG+  +   YT L+ AY ++G L++++  + +M+     + D   YS+L++      
Sbjct: 71  MADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRR-RGIRLDTAGYSMLVRLYRDNG 129

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
            +     ++ EM  +G+E     Y+ +ID +GK  +  +    F  M  + G  PDI T 
Sbjct: 130 MWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKM-RAEGIKPDISTW 188

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N++I  +   GN+++  +++      G+  D +   ++    G  G +D+++ + D M+ 
Sbjct: 189 NALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKN 248

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R F  +   Y ++++ +G+ GH     E    ++   M+ +   +C L +AY++ GL  +
Sbjct: 249 RGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLANAYAQQGLCEQ 308

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++L+ +E      +    N +I+A+G AG   +   +F  +K+    PD +T+ T+++
Sbjct: 309 TVNVLQLMEEEGFEPNLVMLNLLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMK 368

Query: 440 AY 441
            +
Sbjct: 369 TF 370



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 135/314 (42%), Gaps = 2/314 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M + G +PS   Y  L+ A  ++G   EA + + +M+     +PD   Y+ L++      
Sbjct: 1   MQASGGRPSSGAYARLIRALSRAGRALEAEALLLEMRR-HGPRPDAAHYNALLEGLLAAA 59

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              L +++L +M+  G+  +  TY  ++  Y +A + E+       M   G    D    
Sbjct: 60  HLRLADRLLLQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRG-IRLDTAGY 118

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + ++  Y ++G  +K      E   +GV+ D++  + L  ++G+ G     R V D M+ 
Sbjct: 119 SMLVRLYRDNGMWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRA 178

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + T+N +I+   + G++++   +F  M+  GM P+   +  ++S   + G   +
Sbjct: 179 EGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDE 238

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           +  +   ++N         +  ++  YGQ G      E    ++  +       F  +  
Sbjct: 239 IKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLAN 298

Query: 440 AYNALGMTEAAQNL 453
           AY   G+ E   N+
Sbjct: 299 AYAQQGLCEQTVNV 312



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 5/202 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+ F  ++++  Y    + F  ++  LG+  + ++   LF+ M + G K S  VY  LV
Sbjct: 204 ALRFFTSMQEEGMYPD-PKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLV 262

Query: 157 SAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
             YGQ G   +A   I  +++ +    P V+   +L  +  +    +    +L  M   G
Sbjct: 263 DIYGQYGHFRDARECIAALRAENMQLSPRVFC--VLANAYAQQGLCEQTVNVLQLMEEEG 320

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
            E + V  N +I+ +G A +  E  + F  + +SG   PD+ T  +++  +  +   EK+
Sbjct: 321 FEPNLVMLNLLINAFGTAGRHLEALAVFQHIKDSG-MSPDVVTYTTLMKTFMRAKKFEKV 379

Query: 276 EKWYNEFNLMGVKADIQTLNIL 297
            + Y E    G   D +   +L
Sbjct: 380 SEVYREMERAGCTPDRKAREML 401



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%)

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L ++  RAG   +  +++  M++    P    YN ++E    A H+   +    +M   G
Sbjct: 16  LIRALSRAGRALEAEALLLEMRRHGPRPDAAHYNALLEGLLAAAHLRLADRLLLQMADDG 75

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +  N  TY  L+ AY++AG +     +L ++    + LDT  ++ ++  Y   G  +K  
Sbjct: 76  VARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSMLVRLYRDNGMWKKAI 135

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +L + M+E     D   ++ +I  +   G    A+ + +KM A
Sbjct: 136 DLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRA 178



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           MQ     P+   Y  +I    +AG   + E    +M+  G +P++  Y +L+     A  
Sbjct: 1   MQASGGRPSSGAYARLIRALSRAGRALEAEALLLEMRRHGPRPDAAHYNALLEGLLAAAH 60

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           +   D +L Q+ +  V  +   +  ++ AY +AG +E    +   M+ R    D   ++ 
Sbjct: 61  LRLADRLLLQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSM 120

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +++ Y   GM + A +L  +M
Sbjct: 121 LVRLYRDNGMWKKAIDLVMEM 141


>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Vitis vinifera]
          Length = 1071

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 6/335 (1%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +   L+ + GK  + ++A  +F  +  +G      +Y +++ AY + G  +EA+    ++
Sbjct: 678  SIASLITLYGKQHKLKKAIEVFSAI--EGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEV 735

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  +  V + S ++ +   + +    E ++      G+E   V YNT I+    A +
Sbjct: 736  TG-KGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGR 794

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL--MGVKADIQT 293
                 S +  MV S G  P I T N+MIS YG    ++K  + +N+     +GV  D +T
Sbjct: 795  LHFANSIYDRMV-SLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKT 853

Query: 294  LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
               L   YG+AG   +   +   MQ+    P  V+YNI+I  +  AG   + +E F+ M 
Sbjct: 854  YTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAML 913

Query: 354  HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
              G  P+S+TY +L+ AY+++   ++ +  +  ++N  V+     FN ++SA+ +AG  E
Sbjct: 914  RDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 973

Query: 414  KMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            +   ++ T+      PD   + TM++ Y   G  E
Sbjct: 974  EAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVE 1008



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 164/374 (43%), Gaps = 16/374 (4%)

Query: 90   KQKKWQLALKIFGLLRQQQWYQARCQT----FTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
            KQ K + A+++F  +         C +    +  ++    KC + E+A  L+E +   G+
Sbjct: 688  KQHKLKKAIEVFSAIEG-------CTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGI 740

Query: 146  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLI 204
            +  V   + +V A    G   EA + I   +S  D  + D   Y+  I +     R    
Sbjct: 741  ELGVVSISKVVHALANYGKHQEAENVIR--RSFEDGLELDTVAYNTFINAMLGAGRLHFA 798

Query: 205  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMI 263
              I   M  LG+  S  TYNT+I  YG+ +K ++    F+    SG G   D  T  ++I
Sbjct: 799  NSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLI 858

Query: 264  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            S YG +G   +    + E    G+K    + NI+   Y  AG++ + + +   M +    
Sbjct: 859  SYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCS 918

Query: 324  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
            P  +TY  +I  + ++    + EE    M++ G+ P+ + +  L+SA++KAG   + + +
Sbjct: 919  PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 978

Query: 384  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
               + ++ +  D   +  ++  Y   G VEK    F  ++E    PD    ++ +  Y  
Sbjct: 979  YHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIRE-SVEPDRFIMSSAVHFYKL 1037

Query: 444  LGMTEAAQNLENKM 457
             G    A+ + + M
Sbjct: 1038 AGKELEAEGILDSM 1051



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 137/311 (44%), Gaps = 10/311 (3%)

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L++ YG+   L +A   I    ++  C      Y  +I +  K  + +    +  E++
Sbjct: 680 ASLITLYGKQHKLKKA---IEVFSAIEGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVT 736

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             GIE   V+ + ++       K +E E+      E G    D    N+ I+A   +G +
Sbjct: 737 GKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDG-LELDTVAYNTFINAMLGAGRL 795

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV----T 328
                 Y+    +GV   IQT N +   YGR    DK  +V  F + R     V     T
Sbjct: 796 HFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDK--AVEMFNKARCSGVGVSLDEKT 853

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I  +GKAG   +    F++M+  G+KP  ++Y  +++ Y+ AGL  +   + + + 
Sbjct: 854 YTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAML 913

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
                 D+  +  +I AY Q+    +  E  ++M+    +P  + F  ++ A+   G TE
Sbjct: 914 RDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 973

Query: 449 AAQNLENKMIA 459
            A+ + + +++
Sbjct: 974 EAERVYHTLLS 984



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 124/269 (46%), Gaps = 1/269 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           +P V  Y+IL++   +  +  L E+   EM   G E   V   T++  Y +  + + M S
Sbjct: 189 QPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLS 248

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            +SA V+  G  P I   N M+S+        K+   + E    GV  +  T  ++  S 
Sbjct: 249 FYSA-VQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSL 307

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G+ ++       M+   F P  VTY+++I    K G+ ++  + ++ M++R + P++
Sbjct: 308 VKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSN 367

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
            T  SL++ Y K G   +  S+  ++E + ++ D   +  +I  YG+ G  E   + F  
Sbjct: 368 YTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKE 427

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
            ++   + +  T+  M Q +   G  E A
Sbjct: 428 TEQLGLLTNEKTYIAMAQVHLNSGNFEKA 456



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 151/364 (41%), Gaps = 3/364 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q+ W+ A   FG ++ Q  YQ     +T L+ + G+  + + A   F  ML  G +P  
Sbjct: 168 EQRGWRQARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDE 227

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
                ++  Y + G      S  + ++      P +  ++ ++ S  K      +  +  
Sbjct: 228 VACGTMLCTYARWGRHKAMLSFYSAVQE-RGIIPSIAVFNFMLSSLQKKSLHGKVIDLWR 286

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+  ++ TY  +I    K    EE   +F  M ++ G  P+  T + +IS    +
Sbjct: 287 EMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEM-KNLGFVPEEVTYSLLISLSSKT 345

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN ++  K Y +     +     T   L   Y + G Y +  S+   M+K       V Y
Sbjct: 346 GNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIY 405

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            ++I  +GK G  E  E+ FK+ +  G+  N  TY ++   +  +G   K  +I+  + +
Sbjct: 406 GLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRS 465

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            ++      +  ++  Y    D+      F  +  +  +PD  +   M+  Y  L + E 
Sbjct: 466 RNIWFSRFSYIVLLQCYVMKEDLASAEATFQAL-SKTGLPDAGSCNDMLNLYIKLDLLEK 524

Query: 450 AQNL 453
           A++ 
Sbjct: 525 AKDF 528



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 5/212 (2%)

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            P +     ++  YG  G I+  E+ + E    G + D      +  +Y R G +  M S
Sbjct: 189 QPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLS 248

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
               +Q+R   P++  +N ++ +  K     K+ + +++M  +G+ PNS TY  ++S+  
Sbjct: 249 FYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLV 308

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           K GL+ +      +++N   + +   ++ +IS   + G+ ++  +L+  M+ R  VP N 
Sbjct: 309 KDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNY 368

Query: 433 TFATMIQAYNALGMTEAAQNL-----ENKMIA 459
           T A+++  Y   G    A +L     +NK++A
Sbjct: 369 TCASLLTLYYKNGDYSRAVSLFSEMEKNKIVA 400


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 5/351 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    +   L+  L   K+ + A   F   L   + P +  +  ++S   + G L +A 
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 170 STINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL--IEKILAEMSYLGIECSAVTYNTI 226
               D+K+     P V TY+ LI   C K    ++  ++ +L EM   GI  +AVT+  +
Sbjct: 212 DVAKDIKAWG-LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVL 270

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+GY K          F  M + G     + T NS+IS   + G +E+  K   E   +G
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQG-IAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 329

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  +  T   + K + + GM       +D M +R   P VV YNI+I+ + + G +E   
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 389

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              + M  +G+ PN  TY  L++ +S++G       +L +++   +  D   +N +I A 
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              G+V K  +L   M E    P+++T+ T+IQ +   G  ++A  +  +M
Sbjct: 450 CCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 161/373 (43%), Gaps = 6/373 (1%)

Query: 89  IKQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           +  K+  LA K F   LR++        TF  ++  L +  Q  +A  + + + + GL P
Sbjct: 167 VGAKRVDLAEKAFRSALRRR--VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAP 224

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIE 205
           SV  Y +L+  Y + G     +     +K + +    P   T+ +LI    K        
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++  EM   GI  S VTYN++I G     K EE       M E  G  P+  T   ++  
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM-EDLGLSPNEITFGCVLKG 343

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +   G +     W +      V+ D+   NIL   Y R G  +   +V + M K+   P 
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYN +I  F ++G          +MK +G++ + +TY  L+ A    G + K   +L 
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++    +  +   +N II  +   G+++   E+   M++     + +T+   I+ +  +G
Sbjct: 464 EMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIG 523

Query: 446 MTEAAQNLENKMI 458
             + A +L N+M+
Sbjct: 524 KMDEANDLLNEML 536


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 169/343 (49%), Gaps = 8/343 (2%)

Query: 102 GLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           GLL++ +  +A CQ    T++ L+  L + +   +A  +F  M + G+ P +  YT+L+ 
Sbjct: 219 GLLKKME--EAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ 276

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
              +     EA + +N+M S+ +  PD+ T+++L+ +  K  +      +L  M+ +G+E
Sbjct: 277 GLCKFSRWKEASALLNEMTSL-NIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVE 335

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + VTY++++ GY       E    F  M+ + GC P+IF+ N +I+ Y  +  I++  +
Sbjct: 336 PNVVTYSSLMYGYSLWTDVVEARKLFHVMI-TKGCKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            +NE    G+  +  + N L   + + G   + + +   M      P + TY+I+++ F 
Sbjct: 395 LFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFC 454

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G++ K    F+ M+   +KPN + Y  LV A  K+G       +  ++    +     
Sbjct: 455 KQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQ 514

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +  II+   + G +++  E F  M+   C PD I++  +I+ 
Sbjct: 515 LYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRG 557



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 40/363 (11%)

Query: 129 QPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           Q ++  L F V+   +  GL+P++  +T L++   + G   +A    +DM +   C+PDV
Sbjct: 140 QLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVA-KGCQPDV 198

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY+ +I    K         +L +M   G + + VTY+T+ID   + +   E    FS 
Sbjct: 199 YTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSY 258

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M ++ G  PDIFT  S+I         ++     NE   + +  DI T N+L  ++ + G
Sbjct: 259 M-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEG 317

Query: 306 MYDKMRSVM--------------------------DFMQKRFFF---------PTVVTYN 330
              +   V+                          D ++ R  F         P + +YN
Sbjct: 318 KVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYN 377

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           I+I  + KA  I++  + F +M H+G+ PN+++Y +L+  + + G + +   + R +  +
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTN 437

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             + D   ++ ++  + + G + K   LF  M+  +  P+ + +  ++ A    G  + A
Sbjct: 438 GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497

Query: 451 QNL 453
           + L
Sbjct: 498 RKL 500



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 165/356 (46%), Gaps = 36/356 (10%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  ML     P +  +  L+SA  + G   +   +++    +    P++YT SI +    
Sbjct: 80  FNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFC 139

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           +  R DL   +LA++  LG++ + VT+ T+I+G  K  +F +    F  MV + GC PD+
Sbjct: 140 QLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV-AKGCQPDV 198

Query: 257 FTLNSMISAY-------GNSGNIEKME---------------------KWYNE----FNL 284
           +T N++I+           +G ++KME                     +  NE    F+ 
Sbjct: 199 YTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSY 258

Query: 285 M---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
           M   G+  DI T   L +   +   + +  ++++ M      P +VT+N++++TF K G 
Sbjct: 259 MKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +     K M   G++PN +TY SL+  YS    +++   +   +       +   +N 
Sbjct: 319 VSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNI 378

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I+ Y +A  +++  +LF  M  +   P+N+++ T+I  +  LG    AQ+L   M
Sbjct: 379 LINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM 434



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 166/349 (47%), Gaps = 10/349 (2%)

Query: 114 CQ--TFTKLMVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           CQ   +T   ++ G CK  E A+   L + M   G +P++  Y+ L+ +  +  L++EA 
Sbjct: 194 CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEAL 253

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
              + MK+     PD++TY+ LI+   KF R+     +L EM+ L I    VT+N ++D 
Sbjct: 254 DIFSYMKA-KGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDT 312

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K  K  E       M E G   P++ T +S++  Y    ++ +  K ++     G K 
Sbjct: 313 FCKEGKVSEALGVLKTMTEMG-VEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKP 371

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I + NIL   Y +A   D+   + + M  +   P  V+YN +I  F + G + + ++ F
Sbjct: 372 NIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLF 431

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           + M   G  P+  TY  L+  + K G + K   + R ++++ +  +   +  ++ A  ++
Sbjct: 432 RNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKS 491

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAAQNLE 454
           G+ +   +LF  +  +   P    + T+I      G+     EA +N+E
Sbjct: 492 GNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNME 540



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN- 280
           TY    D     +  ++  +SF+ M+      P I     ++SA      I KM ++Y+ 
Sbjct: 59  TYQHKNDASSSFRNIDDALASFNHMLHRKPL-PCIIQFAKLLSA------IVKMGQYYDV 111

Query: 281 ------EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
                 +  L+G+  +I TL+I    + +    D   SV+  + K    PT+VT+  +I 
Sbjct: 112 VISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLIN 171

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              K G   +  E F  M  +G +P+  TY ++++   K G       +L+++E +    
Sbjct: 172 GLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQP 231

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   ++ +I +  +   V +  ++F  MK +   PD  T+ ++IQ        + A  L 
Sbjct: 232 NMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALL 291

Query: 455 NKMIAM 460
           N+M ++
Sbjct: 292 NEMTSL 297



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 98/240 (40%)

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           + +  ++    K  ++ ++  S S  +E  G  P+I+TL+  ++ +     ++       
Sbjct: 93  IQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLA 152

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +   +G++  I T   L     + G + +   + D M  +   P V TYN +I    K G
Sbjct: 153 KVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIG 212

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
                    KKM+  G +PN +TY +L+ +  +  L+ +   I   ++   +  D   + 
Sbjct: 213 ETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYT 272

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            +I    +    ++   L   M   + +PD +TF  ++  +   G    A  +   M  M
Sbjct: 273 SLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEM 332



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   KQ     A ++F  + Q  + +     +T L+  + K    + A  LF  +   G
Sbjct: 450 LDGFCKQGYLGKAFRLFRAM-QSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQG 508

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           L+P V +YT +++   + GLLDEA     +M++   C PD  +Y+++I+ 
Sbjct: 509 LQPHVQLYTTIINGLCKEGLLDEALEAFRNMEA-DGCPPDEISYNVIIRG 557


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 166/371 (44%), Gaps = 8/371 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K   L +K  GL+  +  Y      + KL    G  K+  Q   + E+M    + P +  
Sbjct: 260 KDLLLDMKRNGLVPNRVTYNNLVYGYCKL----GSLKEAFQ---IVELMKQTNILPDLCT 312

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L++    +G + E    ++ MKS+   +PDV TY+ LI  C +       +K++ +M
Sbjct: 313 YNILINGVCNAGSIREGLELMDVMKSLK-LQPDVVTYNTLIDGCFELGLSLEAKKLMEQM 371

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G++ + VT+N  +    K +K EE+      +VE  G  PDI T +++I AY   G+
Sbjct: 372 ENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGD 431

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +    +   E    G+K +  TLN +  +  +    D+  +++D   KR +    VTY  
Sbjct: 432 LSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGT 491

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I  + +   +EK  E + +MK   + P   T+ SL+      G          ++  S 
Sbjct: 492 LIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESG 551

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           ++ D   FN II  Y + G VEK  E +    +    PDN T   ++      GMTE A 
Sbjct: 552 LLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKAL 611

Query: 452 NLENKMIAMKE 462
           N  N +I  +E
Sbjct: 612 NFFNTLITERE 622



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 174/367 (47%), Gaps = 16/367 (4%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASL-----LFE 138
           AL   +   K  +AL++F   ++    + +    T   +++G  + P   S+     +F+
Sbjct: 137 ALSAYLHAGKPHVALQVF---QKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFD 193

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
            M+  G+   V  +  LV+ Y   G L++A   +  M S  +  PD  TY+ ++K+ +K 
Sbjct: 194 DMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKK 253

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
            R   ++ +L +M   G+  + VTYN ++ GY K    +E       M ++    PD+ T
Sbjct: 254 GRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT-NILPDLCT 312

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N +I+   N+G+I +  +  +    + ++ D+ T N L       G+  + + +M+ M+
Sbjct: 313 YNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQME 372

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH----RGMKPNSITYCSLVSAYSKA 374
                P  VT+NI ++   K    EK EE  +K+K      G  P+ +TY +L+ AY K 
Sbjct: 373 NDGVKPNQVTHNISLKWLCKE---EKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKV 429

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +     ++R++    + ++T   N I+ A  +   V++   L  +  +R  + D +T+
Sbjct: 430 GDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTY 489

Query: 435 ATMIQAY 441
            T+I  Y
Sbjct: 490 GTLIMGY 496



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 5/315 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDLI- 204
           PS  ++   +SAY  +G    A      M  +   KP++ T + L+    ++   F +  
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLK-LKPNLLTCNTLLIGLVRYPSSFSIAS 187

Query: 205 -EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++  +M  +G+     T+N +++GY    K E+       MV     +PD  T N+++
Sbjct: 188 AREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTIL 247

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A    G +  ++    +    G+  +  T N L   Y + G   +   +++ M++    
Sbjct: 248 KAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNIL 307

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P + TYNI+I     AG I +  E    MK   ++P+ +TY +L+    + GL ++   +
Sbjct: 308 PDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKL 367

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYN 442
           + Q+EN  V  +    N  +    +    E++      + E H   PD +T+ T+I+AY 
Sbjct: 368 MEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYL 427

Query: 443 ALGMTEAAQNLENKM 457
            +G    A  +  +M
Sbjct: 428 KVGDLSGALEMMREM 442



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 38/294 (12%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K+ E    + E++   G  P +  Y  L+ AY + G L  A   + +M      K +  T
Sbjct: 395 KREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQ-KGIKMNTIT 453

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------EME 240
            + ++ +  K  + D    +L      G     VTY T+I GY + +K E       EM+
Sbjct: 454 LNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMK 513

Query: 241 --------SSFSAMVESGGCH--------------------PDIFTLNSMISAYGNSGNI 272
                   ++F++++  G CH                    PD  T NS+I  Y   G +
Sbjct: 514 RIKITPTVTTFNSLI-GGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRV 572

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           EK  ++YNE      K D  T NIL     + GM +K  +  + +       TV TYN +
Sbjct: 573 EKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDTV-TYNTM 631

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           I  F K   +++  +   +M+ + ++P+  TY S++++  + G + + D +L++
Sbjct: 632 ISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKK 685


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 9/341 (2%)

Query: 117  FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            FT   ++ G C+  E  QA  L E M    +  +  +Y  +++   + G   EA   ++ 
Sbjct: 1698 FTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHS 1757

Query: 175  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---G 231
            M + S C PD+YTY+ILI +  K  R +  + ++  M         VTYNT+I G    G
Sbjct: 1758 MATTS-CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKG 1816

Query: 232  KAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
              + + E     F  MV+ G   P   T   +I A       E+ +K  +  +  G   D
Sbjct: 1817 NGRFRVERAFRLFEEMVDKGHT-PTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFD 1875

Query: 291  IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
            + T N+L   + +AGM DK   +   M  R   P VVTYN +++ F KAG +E+  + F 
Sbjct: 1876 LVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFA 1935

Query: 351  KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            +MK RG+ PN  TY S+  A  KAG +    + L ++    ++ D   +  +IS   + G
Sbjct: 1936 EMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTICKLG 1994

Query: 411  DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              +   +L   M E+   P+ +TF  + +A +    T+ A+
Sbjct: 1995 KGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAK 2035



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 118/257 (45%), Gaps = 5/257 (1%)

Query: 207  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            ++AE      + +A TY+TI+ GY +  +  +  +    M +      +    N +++  
Sbjct: 1684 LIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHM-KKAEVPANAKLYNIILTHL 1742

Query: 267  GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
               G  ++     +         DI T NIL  +  + G  +  + +++ MQ R     +
Sbjct: 1743 CKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDI 1802

Query: 327  VTYNIVIETFGKAGH----IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            VTYN +I    + G+    +E+    F++M  +G  P S+TY  ++ A  +  +  +   
Sbjct: 1803 VTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQK 1862

Query: 383  ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
            +L  +  +    D   +N +I+ + +AG ++K  +LF+ M  R C+PD +T+ +++  + 
Sbjct: 1863 VLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFC 1922

Query: 443  ALGMTEAAQNLENKMIA 459
              G  E A  L  +M A
Sbjct: 1923 KAGKVEEANKLFAEMKA 1939



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 17/268 (6%)

Query: 102  GLLRQQQWYQARCQTFTKLMVMLGKCKQP------EQASLLFEVMLSDGLKPSVDVYTAL 155
            GL+   Q  +      T   ++ G C++       E+A  LFE M+  G  P+   YT +
Sbjct: 1788 GLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVV 1847

Query: 156  VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
            + A  +  + DE    + D+   + C  D+ TY++LI    K    D    +  EM   G
Sbjct: 1848 IDALLRVKM-DEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRG 1906

Query: 216  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
                 VTYN+I+DG+ KA K EE    F+ M ++ G  P+  T  S+  A   +G ++  
Sbjct: 1907 CIPDVVTYNSIVDGFCKAGKVEEANKLFAEM-KARGIFPNGRTYTSITDACLKAGRMQDA 1965

Query: 276  EKWYNEFNLMGVKADIQTLNILTK----SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
              +  E    G+   I  + +++       G+ G       ++  M ++ F P +VT+N+
Sbjct: 1966 HAYLVEMRKEGLVDAISYVALISTICKLGKGKLGF-----QLLREMLEKGFKPNLVTFNV 2020

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            V E   K  + +  +   ++++ +   P
Sbjct: 2021 VFEALSKESNTDDAKIMIQELRQQHSSP 2048


>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  L   M  DG+  +   Y  L+ AY ++G L++++  + +MK     + D   YS L+
Sbjct: 141 ADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWG-IRLDTAGYSTLV 199

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           +       +     ++ EM  +G+E     YN +ID +GK  +  +    F  M    G 
Sbjct: 200 RLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM-RGQGI 258

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PDI T N++I  +   GN+++  ++       G+  D +    +    G  G +D+++ 
Sbjct: 259 KPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKE 318

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           + D M+ R F  +   Y ++++ +G+ GH    +E    +K   ++ +   +C L +AY+
Sbjct: 319 LFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYA 378

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + GL  +  S+L+ +E   +  +    N +I+A+  AG   +   +F  +K+    PD +
Sbjct: 379 QQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVV 438

Query: 433 TFATMIQAY 441
           T+ T+++A+
Sbjct: 439 TYTTLMKAF 447



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 12/270 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A+ L   M   G++  V +Y  L+  +G+ G L +A      M+     KPD+ T++ 
Sbjct: 209 KKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRG-QGIKPDIETWNA 267

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--- 247
           LI+   +        + LA M   G+      + TII+  G+  K++E++  F  M    
Sbjct: 268 LIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKELFDKMRNRG 327

Query: 248 --ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
             ESG     I+ +  ++  YG  G+    ++         ++       +L  +Y + G
Sbjct: 328 FKESGA----IYAV--LVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQG 381

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + ++  SV+  M+     P +V  N++I  F  AG   + +  F+ +K  GM P+ +TY 
Sbjct: 382 LCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYT 441

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +L+ A+ +     KV  +  ++E +    D
Sbjct: 442 TLMKAFMRVKRYEKVSEVYSEMERAGCTPD 471



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 4/184 (2%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + F  ++  LG+  + ++   LF+ M + G K S  +Y  LV  YGQ G   +A   +  
Sbjct: 298 KIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAA 357

Query: 175 MKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +K+ +    P ++   +L  +  +    +    +L  M   GIE + V  N +I+ +  A
Sbjct: 358 LKAENLQLSPSIFC--VLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTA 415

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +  E ++ F  + +SG   PD+ T  +++ A+      EK+ + Y+E    G   D + 
Sbjct: 416 GRHLEAQAVFQHIKDSG-MSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGCTPDRKA 474

Query: 294 LNIL 297
             +L
Sbjct: 475 REML 478


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 6/335 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +   L+ + GK  + ++A  +F  +  +G      +Y +++ AY + G  +EA+    ++
Sbjct: 612 SIASLITLYGKQHKLKKAIEVFSAI--EGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEV 669

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 +  V + S ++ +   + +    E ++      G+E   V YNT I+    A +
Sbjct: 670 TG-KGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGR 728

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL--MGVKADIQT 293
                S +  MV S G  P I T N+MIS YG    ++K  + +N+     +GV  D +T
Sbjct: 729 LHFANSIYDRMV-SLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKT 787

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L   YG+AG   +   +   MQ+    P  V+YNI+I  +  AG   + +E F+ M 
Sbjct: 788 YTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAML 847

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G  P+S+TY +L+ AY+++   ++ +  +  ++N  V+     FN ++SA+ +AG  E
Sbjct: 848 RDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 907

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   ++ T+      PD   + TM++ Y   G  E
Sbjct: 908 EAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVE 942



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 164/374 (43%), Gaps = 16/374 (4%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQT----FTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           KQ K + A+++F  +         C +    +  ++    KC + E+A  L+E +   G+
Sbjct: 622 KQHKLKKAIEVFSAIEG-------CTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGI 674

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLI 204
           +  V   + +V A    G   EA + I   +S  D  + D   Y+  I +     R    
Sbjct: 675 ELGVVSISKVVHALANYGKHQEAENVIR--RSFEDGLELDTVAYNTFINAMLGAGRLHFA 732

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMI 263
             I   M  LG+  S  TYNT+I  YG+ +K ++    F+    SG G   D  T  ++I
Sbjct: 733 NSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLI 792

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S YG +G   +    + E    G+K    + NI+   Y  AG++ + + +   M +    
Sbjct: 793 SYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCS 852

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  +TY  +I  + ++    + EE    M++ G+ P+ + +  L+SA++KAG   + + +
Sbjct: 853 PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 912

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              + ++ +  D   +  ++  Y   G VEK    F  ++E    PD    ++ +  Y  
Sbjct: 913 YHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIRE-SVEPDRFIMSSAVHFYKL 971

Query: 444 LGMTEAAQNLENKM 457
            G    A+ + + M
Sbjct: 972 AGKELEAEGILDSM 985



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 137/311 (44%), Gaps = 10/311 (3%)

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L++ YG+   L +A   I    ++  C      Y  +I +  K  + +    +  E++
Sbjct: 614 ASLITLYGKQHKLKKA---IEVFSAIEGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVT 670

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             GIE   V+ + ++       K +E E+      E G    D    N+ I+A   +G +
Sbjct: 671 GKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDG-LELDTVAYNTFINAMLGAGRL 729

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV----T 328
                 Y+    +GV   IQT N +   YGR    DK  +V  F + R     V     T
Sbjct: 730 HFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDK--AVEMFNKARCSGVGVSLDEKT 787

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I  +GKAG   +    F++M+  G+KP  ++Y  +++ Y+ AGL  +   + + + 
Sbjct: 788 YTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAML 847

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
                 D+  +  +I AY Q+    +  E  ++M+    +P  + F  ++ A+   G TE
Sbjct: 848 RDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 907

Query: 449 AAQNLENKMIA 459
            A+ + + +++
Sbjct: 908 EAERVYHTLLS 918



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 21/254 (8%)

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           L  + S + Y  ++  YG+  K +  E +F  M+E+G C PD     +M+  Y   G  +
Sbjct: 186 LSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAG-CEPDEVACGTMLCTYARWGRHK 244

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF----------------- 316
            M  +Y+     G+   I   N +  S  +  ++ K   V+DF                 
Sbjct: 245 AMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGK---VIDFSLVKDGLVEESFKTFYE 301

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+   F P  VTY+++I    K G+ ++  + ++ M++R + P++ T  SL++ Y K G 
Sbjct: 302 MKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGD 361

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             +  S+  ++E + ++ D   +  +I  YG+ G  E   + F   ++   + +  T+  
Sbjct: 362 YSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIA 421

Query: 437 MIQAYNALGMTEAA 450
           M Q +   G  E A
Sbjct: 422 MAQVHLNSGNFEKA 435



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/440 (21%), Positives = 179/440 (40%), Gaps = 72/440 (16%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM---LGKCKQPEQASL----------- 135
           +Q+ W+ A   FG ++ Q  YQ     +T L+ +   +GK K  EQA L           
Sbjct: 168 EQRGWRQARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDE 227

Query: 136 ---------------------LFEVMLSDGLKPSVDVYTALVSA------YG-------- 160
                                 +  +   G+ PS+ V+  ++S+      +G        
Sbjct: 228 VACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDFSLV 287

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           + GL++E+F T  +MK++    P+  TYS+LI   +K    D   K+  +M Y  I  S 
Sbjct: 288 KDGLVEESFKTFYEMKNLGFV-PEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSN 346

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
            T  +++  Y K   +    S FS M E      D      +I  YG  G  E  EK + 
Sbjct: 347 YTCASLLTLYYKNGDYSRAVSLFSEM-EKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFK 405

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E   +G+  + +T   + + +  +G ++K  ++M+ M+ R  + +  +Y ++++ +    
Sbjct: 406 ETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKE 465

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +   E  F+ +   G+ P++ +   +++ Y K  L+ K    + Q+    V  D     
Sbjct: 466 DLASAEATFQALSKTGL-PDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCK 524

Query: 401 CIISAYGQAG-------------------DVEKMGELFLTMKERHCVPDNITFAT-MIQA 440
            ++  Y + G                   D E +  L L +K        ++ A+ +I  
Sbjct: 525 TVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLILKMLLKTAGGLSVASHLISK 584

Query: 441 YNALGMTEAAQNLENKMIAM 460
           +   G    AQNL ++++ +
Sbjct: 585 FTREGDISKAQNLNDQLVKL 604



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 150/355 (42%), Gaps = 22/355 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSG---LLDEAFST 171
           +F ++ V+L + +   QA   F  M L    +PSV VYT L+  YGQ G   L ++AF  
Sbjct: 158 SFREMCVVLKEQRGWRQARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLE 217

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG-- 229
           + +    + C+PD      ++ +  ++ R   +    + +   GI  S   +N ++    
Sbjct: 218 MLE----AGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQ 273

Query: 230 ----YGKAKKFEEM-----ESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
               +GK   F  +     E SF    E  + G  P+  T + +IS    +GN ++  K 
Sbjct: 274 KKSLHGKVIDFSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKL 333

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           Y +     +     T   L   Y + G Y +  S+   M+K       V Y ++I  +GK
Sbjct: 334 YEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGK 393

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G  E  E+ FK+ +  G+  N  TY ++   +  +G   K  +I+  + + ++      
Sbjct: 394 LGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFS 453

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +  ++  Y    D+      F  +  +  +PD  +   M+  Y  L + E A++ 
Sbjct: 454 YIVLLQCYVMKEDLASAEATFQAL-SKTGLPDAGSCNDMLNLYIKLDLLEKAKDF 507



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 67/361 (18%), Positives = 139/361 (38%), Gaps = 25/361 (6%)

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           L+ + GK    E A   F+     GL  +   Y A+   +  SG  ++A + +  M+S  
Sbjct: 387 LIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRS-R 445

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +     ++Y +L++           E     +S  G+   A + N +++ Y K    E+ 
Sbjct: 446 NIWFSRFSYIVLLQCYVMKEDLASAEATFQALSKTGLP-DAGSCNDMLNLYIKLDLLEKA 504

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNI 296
           +  F   +       D+    +++  Y   G +   ++   E    G+  D   IQTL++
Sbjct: 505 KD-FIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSL 563

Query: 297 LTK-----------------SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           + K                  + R G   K +++ D + K        +   +I  +GK 
Sbjct: 564 ILKMLLKTAGGLSVASHLISKFTREGDISKAQNLNDQLVKLGRGAEDASIASLITLYGKQ 623

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             ++K  E F  ++  G     + Y S++ AY+K G   +   +  +V    + L     
Sbjct: 624 HKLKKAIEVFSAIE--GCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSI 681

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ++ A    G  ++   +     E     D + + T I A    G    A ++ ++M++
Sbjct: 682 SKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVS 741

Query: 460 M 460
           +
Sbjct: 742 L 742


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 152  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            Y AL+       L+D A    ++MK +  C PD +TY +++ +  K  R + + KI  EM
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 827

Query: 212  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               G + + VTYNTII G  K+K  +E  + +  ++ S G  P   T   ++      GN
Sbjct: 828  HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM-SEGFSPTPCTYGPLLDGLLKDGN 886

Query: 272  IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            IE  E  ++E    G + +    NIL   Y  AG  +K+  + + M ++   P + +Y +
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            VI+T    G +     YFK++   G++P+ ITY  L+    K+G + +  S+   +E   
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 392  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            +  +   +N +I   G+AG   + G+++  +  +   P+  T+  +I+ Y+  G  E A 
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 1066

Query: 452  NLENKMI 458
                +MI
Sbjct: 1067 AAYGRMI 1073



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  +++ M +DG+ P+V  Y+ L+ A+G+    +     + +M
Sbjct: 173 TYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEM 232

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    +P+VY+Y+I I+   +  R +   +IL +M   G +   VT   +I     A +
Sbjct: 233 EA-RGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGR 291

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M  S    PD  T  +++   G+SG+   + + +N     G   ++ +  
Sbjct: 292 LADAKDVFWKMKASDQ-KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYT 350

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               +  + G  D+   V D M+++   P   +YN +I  F KA    +  E F  M   
Sbjct: 351 AAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIH 410

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN  T+   ++ + K+G  +K       +++  ++ D    N ++    + G +   
Sbjct: 411 GPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMA 470

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  +K     PDNIT+  MI+  +     + A  +  +MI
Sbjct: 471 KRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 165/385 (42%), Gaps = 40/385 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LM+  GK +  E    L   M + G++P+V  YT  +   GQ+G L+EA+  +  
Sbjct: 207 RTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRK 266

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--- 231
           M+    CKPDV T ++LI+      R    + +  +M     +   VTY T++D  G   
Sbjct: 267 MEE-EGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSG 325

Query: 232 ------------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLN 260
                       KA  + +   S++A V++                    G  P  ++ N
Sbjct: 326 DSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYN 385

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+IS +  +    +  + +N  N+ G   +  T  +    +G++G   K     + M+ +
Sbjct: 386 SLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSK 445

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV  N V+    K G +   +  F ++K  G+ P++ITY  ++   SKA    + 
Sbjct: 446 GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEA 505

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I  ++  +    D    N +I    +AG   +  ++F  +KE +  P + T+ T++  
Sbjct: 506 MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAG 565

Query: 441 YNALG-MTEAAQNLENKMIAMKENS 464
               G + E  Q LE     M  NS
Sbjct: 566 LGREGKVKEVMQLLE----GMNSNS 586



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G        S ++  + +DG   +V  YTA V A  Q G +DEA    ++M
Sbjct: 313 TYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEM 372

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P  Y+Y+ LI    K  RF+   ++   M+  G   +  T+   I+ +GK+ +
Sbjct: 373 KQ-KGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGE 431

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    +  M +S G  PD+   N+++     +G +   ++ ++E   MG+  D  T  
Sbjct: 432 SLKALKRYELM-KSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYT 490

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K   +A   D+   +   M +    P V+  N +I+   KAG   +  + F ++K  
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P   TY +L++   + G + +V  +L  + ++    +   +N ++    + G+V   
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++  +M    C+PD  ++ T++
Sbjct: 611 LDMLYSMTMNGCMPDLSSYNTVM 633



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 2/262 (0%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
              + Y++   T+  ++  L K K  ++A  L+  ++S+G  P+   Y  L+    + G +
Sbjct: 828  HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 887

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            ++A +  ++M     C+P+   Y+IL+         + + ++   M   G+     +Y  
Sbjct: 888  EDAEALFDEMLECG-CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            +ID      +  +  S F  + + G   PD+ T N +I   G SG +E+    YN+    
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMG-LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK 1005

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G+  ++ T N L    G+AG   +   + + +  + + P V TYN +I  +  +G  E  
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 1065

Query: 346  EEYFKKMKHRGMKPNSITYCSL 367
               + +M   G +PNS TY  L
Sbjct: 1066 FAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 8/257 (3%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           FDL+++ +       I+ +  T+ T+    G          +   M E+G    + +T N
Sbjct: 124 FDLMQRQI-------IKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAG-IVLNAYTYN 175

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I     SG   +    Y      GV   ++T ++L  ++G+    + +  ++  M+ R
Sbjct: 176 GLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEAR 235

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P V +Y I I   G+AG +E+     +KM+  G KP+ +T   L+     AG +   
Sbjct: 236 GVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADA 295

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +  +++ SD   D   +  ++   G +GD   + E++  +K      + +++   + A
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 441 YNALGMTEAAQNLENKM 457
              +G  + A ++ ++M
Sbjct: 356 LCQVGRVDEALDVFDEM 372



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 135/354 (38%), Gaps = 41/354 (11%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K  +   A  +F  + + G+ P    YT ++    ++   DEA     +M   + C P
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE-NRCAP 519

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV   + LI    K  R +   KI  E+  + +E +  TYNT++ G G+  K +E+    
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M  S    P+I T N+++     +G +           + G   D+ + N  T  YG 
Sbjct: 580 EGM-NSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYN--TVMYGL 636

Query: 304 AG---------MYDKMRSVM--DFMQKRFFFPTVVTYNI--------------------- 331
                      M+ +M+ V+  D+       P+ V   +                     
Sbjct: 637 VKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDR 696

Query: 332 -----VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
                ++E   K    EK  E+ + +   G+  + +    ++    K    +    ++++
Sbjct: 697 SSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKK 756

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            EN  V L T  +N +I        ++   ELF  MK   C PD  T+  ++ A
Sbjct: 757 FENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDA 810



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           ++ T  ++  A G  G +             G+  +  T N L     ++G   +   V 
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M      PTV TY++++  FGK    E +     +M+ RG++PN  +Y   +    +A
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +   ILR++E      D      +I     AG +    ++F  MK     PD +T+
Sbjct: 255 GRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTY 314

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
            T++      G + +   + N + A
Sbjct: 315 ITLLDKCGDSGDSRSVSEIWNALKA 339



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           ++ A+G  G++ ++      F+LM    +KA++ T   +  + G  G        +  M+
Sbjct: 110 LMRAHGRVGDVAQV------FDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMK 163

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +        TYN +I    K+G   +  + +K M   G+ P   TY  L+ A+ K     
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAE 223

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
            V  +L ++E   V  +   +   I   GQAG +E+   +   M+E  C PD +T   +I
Sbjct: 224 TVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLI 283

Query: 439 QAYNALGMTEAAQNLENKMIA 459
           Q     G    A+++  KM A
Sbjct: 284 QILCDAGRLADAKDVFWKMKA 304


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 37/379 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T + ++  L + +Q   A  LF+ ++S GL+P V VYTA+V +  +      A   I  
Sbjct: 181 RTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGR 240

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+S S C   V TY++ I+   K  R     +I   +SY G+     TY T++ G  K +
Sbjct: 241 MES-SGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +FE  E   + M+E G   P    +++++      GNI       N+    GV   +   
Sbjct: 300 EFEAGEEMMNEMIEFGFV-PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVY 358

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------KMEE 347
           N L  S  + G  D+  S+ + M  +  FP  VTY+I+I++F K G ++       KM E
Sbjct: 359 NALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTE 418

Query: 348 ----------------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                                        F +M   G+KPN + Y SL+S Y K G +  
Sbjct: 419 VGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHN 478

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +  ++    +  +T  F  +IS    A  + +  +LF  M E + +P+ +T+  +I+
Sbjct: 479 AFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538

Query: 440 AYNALGMTEAAQNLENKMI 458
            +   G T  A  L ++M+
Sbjct: 539 GHCKEGNTVRAFELLDEMV 557



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 182/406 (44%), Gaps = 18/406 (4%)

Query: 65  EKKVSSKKYKNLWPKPVLEAL--DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMV 122
           E   ++  +K L+P  V  ++  D   K+ K  +AL   G +  +   +A    ++ L+ 
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKM-TEVGIKATVYPYSSLIS 433

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
              K  +   A  LF+ M+++GLKP+V +YT+L+S Y + G L  AF   ++M  K +S 
Sbjct: 434 GHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS- 492

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             P+ YT++ LI      +R     K+  EM    +  + VTYN +I+G+ K        
Sbjct: 493 --PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN--------LMGVKADIQ 292
                MVE G   PD +T   +IS   ++G + +  ++ N+          + G   ++ 
Sbjct: 551 ELLDEMVEKG-LVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVV 609

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   L     + G+ DK   +   M      P   TY   ++     G+IEK  +    +
Sbjct: 610 TYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-LHDV 668

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G   N++TY  L+  + K G I +   +L  + +S +  D   ++ II  Y + GD+
Sbjct: 669 LLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDL 728

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++  +L+ +M  R   PD + +  +I      G    A  L + M+
Sbjct: 729 KEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 774



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 29/316 (9%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ PS+ VY AL+++  + G LDEA S  N+M       P+  TYSILI S  K  + D+
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGH-KGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
               L +M+ +GI+ +   Y+++I G+ K  K    +S F  M+ + G  P++    S+I
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI-ANGLKPNVVIYTSLI 467

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S Y   G +    + Y+E    G+  +  T   L      A    +   +   M +    
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  VTYN++IE   K G+  +  E   +M  +G+ P++ TY  L+S     G + +    
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF 587

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           +  ++                     G+ +K+ E+        C+P+ +T+  +I     
Sbjct: 588 MNDLQ---------------------GEQQKLNEI------EGCLPNVVTYTALINGLCK 620

Query: 444 LGMTEAAQNLENKMIA 459
           +G+ + A+ L  +M+A
Sbjct: 621 IGLMDKAELLCREMLA 636


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 37/379 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T + ++  L + +Q   A  LF+ ++S GL+P V VYTA+V +  +      A   I  
Sbjct: 181 RTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGR 240

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+S S C   V TY++ I+   K  R     +I   +SY G+     TY T++ G  K +
Sbjct: 241 MES-SGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +FE  E   + M+E G   P    +++++      GNI       N+    GV   +   
Sbjct: 300 EFEAGEEMMNEMIEFGFV-PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVY 358

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------KMEE 347
           N L  S  + G  D+  S+ + M  +  FP  VTY+I+I++F K G ++       KM E
Sbjct: 359 NALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTE 418

Query: 348 ----------------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                                        F +M   G+KPN + Y SL+S Y K G +  
Sbjct: 419 VGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHN 478

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +  ++    +  +T  F  +IS    A  + +  +LF  M E + +P+ +T+  +I+
Sbjct: 479 AFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538

Query: 440 AYNALGMTEAAQNLENKMI 458
            +   G T  A  L ++M+
Sbjct: 539 GHCKEGNTVRAFELLDEMV 557



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 150/351 (42%), Gaps = 37/351 (10%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ PS+ VY AL+++  + G LDEA S  N+M       P+  TYSILI S  K  + D+
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGH-KGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
               L +M+ +GI+ +   Y+++I G+ K  K    +S F  M+ + G  P++    S+I
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI-ANGLKPNVVIYTSLI 467

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S Y   G +    + Y+E    G+  +  T   L      A    +   +   M +    
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  VTYN++IE   K G+  +  E   +M  +G+ P++ TY  L+S     G + +    
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF 587

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAG--------------------------------- 410
           +  ++     L+   F+ ++  Y + G                                 
Sbjct: 588 MNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILR 647

Query: 411 --DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             D   + +L   M ++   PDN+ + TMI A    G  + A  L + M++
Sbjct: 648 QQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVS 698



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 175/401 (43%), Gaps = 48/401 (11%)

Query: 65  EKKVSSKKYKNLWPKPVLEAL--DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMV 122
           E   ++  +K L+P  V  ++  D   K+ K  +AL   G +  +   +A    ++ L+ 
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKM-TEVGIKATVYPYSSLIS 433

Query: 123 MLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSV 178
             G CK  +   A  LF+ M+++GLKP+V +YT+L+S Y + G L  AF   ++M  K +
Sbjct: 434 --GHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGI 491

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S   P+ YT++ LI      +R     K+  EM    +  + VTYN +I+G+ K      
Sbjct: 492 S---PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                  MVE G   PD +T   +IS   ++G + +  ++ N+      K +    + L 
Sbjct: 549 AFELLDEMVEKG-LVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALL 607

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             Y + G  D        M  R     +V Y+++I    +      + +  K+M  +G++
Sbjct: 608 HGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLR 667

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+++ Y ++                                   I A  +AG+++    L
Sbjct: 668 PDNVLYTTM-----------------------------------IDANAKAGNLKMAFGL 692

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +  M    C+P+ +T+  +I     +G+ + A+ L  +M+A
Sbjct: 693 WDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA 733



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 3/289 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           ++AL+  Y + G LD+A     +M        D+  YS+LI    +      I  +L +M
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLG-RGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQM 661

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G+    V Y T+ID   KA   +     +  MV S GC P++ T  ++I+     G 
Sbjct: 662 HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMV-SEGCLPNVVTYTALINGLCKIGL 720

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++K E    E        +  T           G  +K   + D + + F   TV TYNI
Sbjct: 721 MDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNI 779

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I  F K G I++  E    M   G+ P+ I+Y +++  Y + G + +   +   + N  
Sbjct: 780 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 839

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           V  DT  +N +I      G++ K  EL   M  R   P+  T+ ++I  
Sbjct: 840 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 5/336 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+    +A  L + M+  GL P    Y  L+S    +G + EA   +ND++     K
Sbjct: 539 GHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQ-K 597

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            +   +S L+    K  R D       EM   G+    V Y+ +I G  + +    +   
Sbjct: 598 LNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDL 657

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M + G   PD     +MI A   +GN++     ++     G   ++ T   L     
Sbjct: 658 LKQMHDQG-LRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLC 716

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G+ DK   +   M      P   TY   ++     G+IEK  +    +   G   N++
Sbjct: 717 KIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-LHDVLLEGFLANTV 775

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L+  + K G I +   +L  + +S +  D   ++ II  Y + GD+++  +L+ +M
Sbjct: 776 TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESM 835

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             R   PD + +  +I      G    A  L + M+
Sbjct: 836 LNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 871



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 23/269 (8%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQ--------------QWYQARCQTFTKLMVMLGKCK 128
           E L   +       ++ I+G+LRQQ              Q  +     +T ++    K  
Sbjct: 625 EMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAG 684

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
             + A  L+++M+S+G  P+V  YTAL++   + GL+D+A     +M + S+  P+  TY
Sbjct: 685 NLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA-SNSLPNQNTY 743

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           +  +   T       IEK +     L  G   + VTYN +I G+ K  + +E       M
Sbjct: 744 ACFLDYLTSEGN---IEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNM 800

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           ++S G  PD  + +++I  Y   G++ E ++ W +  N  GV  D    N L       G
Sbjct: 801 IDS-GISPDCISYSTIIYEYCRRGDLKEAIKLWESMLN-RGVNPDTVAYNFLIYGCCVTG 858

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              K   + D M +R   P   TYN +I 
Sbjct: 859 ELTKAFELRDDMMRRGVKPNRATYNSLIH 887



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 115 QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            T T  +++ G CK  + ++A+ +   M+  G+ P    Y+ ++  Y + G L EA    
Sbjct: 773 NTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLW 832

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             M +     PD   Y+ LI  C          ++  +M   G++ +  TYN++I G
Sbjct: 833 ESMLN-RGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 156 TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 211

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      P+ YTY  +I    K  R D   K+  EM   G ++  AV YN +I GY    
Sbjct: 212 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 271

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +        MVE G     + T N ++ A    G   +  +   E    G+  D+ T 
Sbjct: 272 KLDTALLYRDRMVERGVAM-TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTY 330

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NIL   + + G   K   + + M +R    TVVTY  +I    K G +++ ++ F +   
Sbjct: 331 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR 390

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG++P+ + Y +L++++S +G I +   I+ ++E   +  D   +N ++      G V++
Sbjct: 391 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 450

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +L   M +R   PD +T+ T+I  Y+  G  + A  + N+M+
Sbjct: 451 ARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 494



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 170/376 (45%), Gaps = 13/376 (3%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL I   +R++        T+  ++    K  + ++A  +F+ ML+ G +KP  
Sbjct: 198 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 257

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL+  Y   G LD A     D          V TY++L+ +     R     +++ 
Sbjct: 258 VMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE 316

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+     TYN +I+G+ K    ++    F  M   G     + T  S+I A    
Sbjct: 317 EMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRG-VRATVVTYTSLIYALSKK 375

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++ +K ++E    G++ D+   N L  S+  +G  D+   +M  M+K+   P  VTY
Sbjct: 376 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 435

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++      G +++  +   +M  RG++P+ +TY +L+S YS  G +     I  ++ N
Sbjct: 436 NTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 495

Query: 390 SDVILDTPFFNCIISAY---GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
                    +N +I      GQ  D E M +    M E    PD+ T+ ++I+       
Sbjct: 496 KGFNPTLLTYNALIQGLCKNGQGDDAENMVK---EMVENGITPDDSTYISLIEGLT---- 548

Query: 447 TEAAQNLENKMIAMKE 462
           TE  + ++++ +A  +
Sbjct: 549 TEDERAIDDERLAAAD 564


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 163/381 (42%), Gaps = 59/381 (15%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A  +   M+S G  P    Y+ ++     +  +D AF    +MKS +   PDV+TY+I
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTI 520

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI S  K        K   EM   G   + VTY  +I  Y KA+K       F  M+ S 
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML-SE 579

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----------- 299
           GC P++ T  ++I  +  SG IEK  + Y     M   ADI  +++  K           
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYAR---MRGNADIPDVDMYFKIDDGNIRDPNI 636

Query: 300 -SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            +YG       +A    + R ++D M      P  + Y+ +I+ F K G +++ +  F K
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696

Query: 352 MKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPF--------- 398
           M  RG  PN  TY SL+   +    L + +  + R +ENS   +VI+ T           
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 399 ----------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                                 +  +I  +G+AG V+K  EL   M  + C P+ +T+  
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +I    A G+ + A  L ++M
Sbjct: 817 LINHCCAAGLLDDAHQLLDEM 837



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 16/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  L +VM  +G +P+  VY AL+  + + G LDEA      M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S     P+VYTYS LI    K  R DL  K+L+ M       + + Y  +IDG  K  K
Sbjct: 698 -SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     S M+E  GCHP++ T  +MI  +G +G ++K  +   +    G   +  T  
Sbjct: 757 TDEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYR 815

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFK 350
           +L      AG+ D    ++D M++ ++   +  Y  VIE F +      G ++++ E   
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFNCIISAYGQ 408
                   P    Y  L+ ++ KAG +     + +++ +  S    D   ++ +I +   
Sbjct: 876 V-------PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSL 928

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           A  V+K  EL+  M +R  +P+   F  +++    +   E A  L + +  M
Sbjct: 929 ASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQM 980



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG+CK+      +  +M+++G  PS  ++ +L+ AY +SG    A+  +  M     C+P
Sbjct: 350 LGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQP 402

Query: 184 DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
               Y+ILI       +       +L EK   EM    +  + V  + +      A KFE
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +  S    M+ S G  PD  T + +I    N+  ++     + E     V  D+ T  IL
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             S+ + G+  + R   D M +    P VVTY  +I  + KA  +    E F+ M   G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDV-------------ILDTPFF--NC 401
            PN +TY +L+  + K+G I K   I  R   N+D+             I D   F    
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++    +A  V++  +L   M    C P++I +  +I  +  +G  + AQ +  KM
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 12/315 (3%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +YT ++S   ++ L +EA   ++ M+S S C P+V TY IL+  C +  +    ++IL+ 
Sbjct: 301 IYTQMISGLCEASLFEEAMDFLSRMRS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S   +N++I  Y ++  +         M + G C P     N +I   G  G
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQPGYVVYNILIG--GICG 416

Query: 271 N--------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           N        +E  EK Y E     V  +   ++ L +    AG ++K  S++  M  + F
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P   TY+ VI     A  ++     F++MK   + P+  TY  L+ ++ K GL+ +   
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARK 536

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++       +   +  +I AY +A  +    ELF  M    C+P+ +T+  +I  + 
Sbjct: 537 WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 443 ALGMTEAAQNLENKM 457
             G  E A  +  +M
Sbjct: 597 KSGQIEKACQIYARM 611



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 170/387 (43%), Gaps = 66/387 (17%)

Query: 102 GLLRQ-QQWYQARCQ--------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GLL+Q ++W+    +        T+T L+    K ++   A+ LFE+MLS+G  P+V  Y
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDC---------------KPDVYTYSILIKSCTK 197
           TAL+  + +SG +++A      M+  +D                 P+++TY  L+    K
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+      +L  MS  G E + + Y+ +IDG+ K  K +E +  F+ M E G   P+++
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY-GPNVY 707

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T +S+I            ++ + +  L                       D    V+  M
Sbjct: 708 TYSSLI------------DRLFKDKRL-----------------------DLALKVLSRM 732

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +    P V+ Y  +I+   K G  ++       M+ +G  PN +TY +++  + KAG +
Sbjct: 733 LENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K   ++RQ+       +   +  +I+    AG ++   +L   MK+ +       +  +
Sbjct: 793 DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 438 IQAYN-----ALG-MTEAAQNLENKMI 458
           I+ +N     +LG + E A+N+   +I
Sbjct: 853 IEGFNREFIISLGLLDEIAENVAVPII 879



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           ++++   G  GN    E++  E      +   + LN+L +   R G+++     +  ++ 
Sbjct: 166 HALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKD 225

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P+ +TYN ++  F +A  ++      ++M   G   +  T    V    KAG   +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---R 282

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               L  +E  +  LDT  +  +IS   +A   E+  +    M+   C+P+ +T+  ++
Sbjct: 283 WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 39/250 (15%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++LI+ C +   +++  + L  +  LG + S +TYN ++  + +A + +        M +
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           SG                               FN+ G      TL        +AG   
Sbjct: 261 SG-------------------------------FNMDG-----YTLGCFVHLLCKAG--- 281

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           + R  +  ++K  F    V Y  +I    +A   E+  ++  +M+     PN +TY  L+
Sbjct: 282 RWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               +   + +   IL  +           FN +I AY ++GD     +L   M +  C 
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 429 PDNITFATMI 438
           P  + +  +I
Sbjct: 402 PGYVVYNILI 411


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 5/351 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    +   L+  L   K+ + A   F   L   + P +  +  ++S   + G L +A 
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 170 STINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL--IEKILAEMSYLGIECSAVTYNTI 226
               D+K+     P V TY+ LI   C K    ++  ++ +L EM   GI  +AVT+  +
Sbjct: 212 DVAKDIKAWG-LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVL 270

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+GY K          F  M + G     + T NS+IS   + G +E+  K   E   +G
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQG-IAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 329

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  +  T   + K + + GM       +D M +R   P VV YNI+I+ + + G +E   
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAM 389

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              + M  +G+ PN  TY  L++ +S++G       +L +++   +  D   +N +I A 
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              G+V K  +L   M E    P+++T+ T+IQ +   G  ++A  +  +M
Sbjct: 450 CCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 161/373 (43%), Gaps = 6/373 (1%)

Query: 89  IKQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           +  K+  LA K F   LR++        TF  ++  L +  Q  +A  + + + + GL P
Sbjct: 167 VGAKRVDLAEKAFRSALRRR--VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAP 224

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIE 205
           SV  Y +L+  Y + G     +     +K + +    P   T+ +LI    K        
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++  EM   GI  S VTYN++I G     K EE       M E  G  P+  T   ++  
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM-EDLGLSPNEITFGCVLKG 343

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +   G +     W +      V+ D+   NIL   Y R G  +   +V + M K+   P 
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYN +I  F ++G          +MK +G++ + +TY  L+ A    G + K   +L 
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++    +  +   +N II  +   G+++   E+   M++     + +T+   I+ +  +G
Sbjct: 464 EMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIG 523

Query: 446 MTEAAQNLENKMI 458
             + A +L N+M+
Sbjct: 524 KMDEANDLLNEML 536


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 152/319 (47%), Gaps = 7/319 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++Q  ++    T+T ++ +LG+ KQ      L + M S   KP+V  Y  +
Sbjct: 345 IALGFFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRI 404

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG++  L EA     +M+     +PD  TY  LI    K    ++   +   M  +G
Sbjct: 405 IHAYGRANYLREAVKVFEEMEGAG-YQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVG 463

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +++  GK  +       F  M+++ GC P++ T N +I+    + N + +
Sbjct: 464 LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDN-GCTPNLVTYNIIIALQAKARNYDNV 522

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K Y +  + G + D  T +I+ +  G  G  D+  +V   M +R + P    Y ++++ 
Sbjct: 523 VKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM-RRDWAPDEPVYGLLVDL 581

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +GKAG+++K   ++  M   G++PN  T  SL+SA+ K         +L+ +    ++  
Sbjct: 582 WGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPS 641

Query: 396 ----TPFFNCIISAYGQAG 410
               T   +C   A+ Q G
Sbjct: 642 LQTYTLLLSCCTDAHAQMG 660



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 2/278 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D +TY+ +I    +  +F  + K+L EMS +  + + VTYN II  YG+A    E   
Sbjct: 360 KHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVK 419

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M E  G  PD  T  ++I  +  SG +E     Y     +G+  D  T + +    
Sbjct: 420 VFEEM-EGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCL 478

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+ G       +   M      P +VTYNI+I    KA + + + + ++ M+  G +P+ 
Sbjct: 479 GKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDK 538

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  ++      G + + +++  ++   D   D P +  ++  +G+AG+V+K    +  
Sbjct: 539 ITYSIVMEVLGHCGHLDEAEAVFLEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHA 597

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M +    P+  T  +++ A+  L   + A  +   M+A
Sbjct: 598 MLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLA 635



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 83/153 (54%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G K D  T   +    G+A  +  MR ++D M      PTVVTYN +I  +G+A ++ + 
Sbjct: 358 GFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREA 417

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F++M+  G +P+ +TYC+L+  ++K+G +     +  +++   +  DT  ++ +++ 
Sbjct: 418 VKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC 477

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
            G+ G +    +LF  M +  C P+ +T+  +I
Sbjct: 478 LGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII 510



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 2/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    TY T+I   G+AK+F  M      M  S  C P + T N +I AYG +  + +
Sbjct: 358 GFKHDGHTYTTMIGILGQAKQFGTMRKLLDEM-SSVNCKPTVVTYNRIIHAYGRANYLRE 416

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             K + E    G + D  T   L   + ++G  +    +   MQ+    P   TY+ ++ 
Sbjct: 417 AVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVN 476

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GK G +    + F +M   G  PN +TY  +++  +KA     V  + R ++ +    
Sbjct: 477 CLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRP 536

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +++   +FL M+ R   PD   +  ++  +   G  + A    
Sbjct: 537 DKITYSIVMEVLGHCGHLDEAEAVFLEMR-RDWAPDEPVYGLLVDLWGKAGNVDKALGWY 595

Query: 455 NKMI 458
           + M+
Sbjct: 596 HAML 599


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 167/360 (46%), Gaps = 41/360 (11%)

Query: 117 FTKLMVMLGKCKQPE-QAS--LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           +T  +++   C   E QA+  LL E+    G+ P+  +Y   V A  +SG + EA   + 
Sbjct: 19  YTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVK 78

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +MK  + CKPDV T++ LI    K  R D  +++L EM   G   + VTYNT+I+G   A
Sbjct: 79  NMKDGA-CKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSA 137

Query: 234 KKFEEM------------ESSFSAMV--------------------ESGGCHPDIFTLNS 261
            +  E               +++A++                    +  GC PD FT + 
Sbjct: 138 GRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSI 197

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           +I+    S N+ K ++   E  ++G K   A +   N L   Y +A   D+ R ++  M 
Sbjct: 198 LINGLCKSSNLRKADELLQE--MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSML 255

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +    P VVTY+ +I+   + G ++K     +KM  RG KP+ +TY  LV+   KAG ++
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMV 315

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +++++       +   ++ +     +   ++   +L  +++++  + D + F  ++
Sbjct: 316 EACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 7/279 (2%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEMESS 242
           D YTY +L+++            +L EM    G+  +   YN  +    K+ K  E    
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M + G C PD+ T N++I+    +G +++ ++  +E    G  A++ T N L     
Sbjct: 77  VKNM-KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS 135

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNS 361
            AG   +   VM  M      P   TYN +I  F K+G I++   + ++MK R G  P++
Sbjct: 136 SAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDT 192

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            TY  L++   K+  + K D +L++ +   D       FN ++  Y +A D+++  EL  
Sbjct: 193 FTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLS 252

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +M E  C PD +T++T+I      G  +    L  KM++
Sbjct: 253 SMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVS 291


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 6/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M     +P+   Y  +++ +   G +  A   + +M
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREM 98

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      P+ YTY  +I    K  R D   K+  EM   G ++  AV YN +I GY    
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +        MVE G     + T N ++ A    G   +  +   E    G+  D+ T 
Sbjct: 159 KLDTALLYRDRMVERG-VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 217

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NIL   + + G   K   + + M +R    TVVTY  +I    K G +++ ++ F +   
Sbjct: 218 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR 277

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           RG++P+ + Y +L++++S +G I +   I+ ++E   +  D   +N ++      G V++
Sbjct: 278 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 337

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +L   M +R   PD +T+ T+I  Y+  G  + A  + N+M+
Sbjct: 338 ARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 381



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 168/373 (45%), Gaps = 13/373 (3%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q AL I   +R++        T+  ++    K  + ++A  +F+ ML+ G +KP  
Sbjct: 85  RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 144

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL+  Y   G LD A     D          V TY++L+ +     R     +++ 
Sbjct: 145 VMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE 203

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+     TYN +I+G+ K    ++    F  M   G     + T  S+I A    
Sbjct: 204 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG-VRATVVTYTSLIYALSKK 262

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++ +K ++E    G++ D+   N L  S+  +G  D+   +M  M+K+   P  VTY
Sbjct: 263 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 322

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N ++      G +++  +   +M  RG++P+ +TY +L+S YS  G +     I  ++ N
Sbjct: 323 NTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 382

Query: 390 SDVILDTPFFNCIISAY---GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
                    +N +I      GQ  D E M      M E    PD+ T+ ++I+       
Sbjct: 383 KGFNPTLLTYNALIQGLCKNGQGDDAENM---VKEMVENGITPDDSTYISLIEGLT---- 435

Query: 447 TEAAQNLENKMIA 459
           TE  + ++++ +A
Sbjct: 436 TEDERAIDDERLA 448


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 158/337 (46%), Gaps = 47/337 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+   GK  + + A  LF+ M  +GL+P+  +YT L+  Y + G ++EA + +++M
Sbjct: 233 TYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEM 292

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +  C P VYTY+ LI+                                   G GK+ +
Sbjct: 293 R-MRRCVPTVYTYTELIR-----------------------------------GLGKSGR 316

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    +  M++  GC PD+  +N++I+  G S  +++  + + E  L+    ++ T N
Sbjct: 317 VEDAYGVYKNMLKD-GCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYN 375

Query: 296 ILTKS-YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            + KS +       +  S ++ M+K    P+  TY+I+I+ F K   +EK     ++M  
Sbjct: 376 TIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDE 435

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G  P    YCSL+++  KA      + + ++++ +        +  +I  +G+ G   +
Sbjct: 436 KGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNE 495

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNAL--GMTEA 449
              LF  MK+  C+PD       + AYNAL  GM  A
Sbjct: 496 AMGLFNEMKKLGCIPD-------VYAYNALITGMVRA 525



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 38/338 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+L+  LGK  + E A  +++ ML DG KP V +   L++  G+S  L EA     +M
Sbjct: 303 TYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEM 362

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
           + + +C P+V                                    +TYSILI    K +
Sbjct: 363 RLL-NCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTN 421

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +    +L EM   G       Y ++I+  GKAK++E     F  + E+ G    +   
Sbjct: 422 RVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCG-SSSVRVY 480

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             MI  +G  G   +    +NE   +G   D+   N L     RA M D+  S+   M++
Sbjct: 481 AVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEE 540

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + ++NI++    + G  ++  E F KMK   +KP++++Y +++   S+AGL  +
Sbjct: 541 NGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEE 600

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
              +++++ +     D   ++ I+ A G+  +   M E
Sbjct: 601 ATKLMKEMNSKGFEYDLITYSSILEAVGKVDEDRNMAE 638



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 8/310 (2%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y AL+    ++ L+ E + TI DM   S C       S ++K      R  ++ K L+  
Sbjct: 128 YMALIRCLDENRLVGELWRTIQDMVK-SPCAIGPSELSEIVKI---LGRVKMVNKALSIF 183

Query: 212 SYL-GIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             + G +C  +A TYN++I    +    E++   ++ M   G C PD  T +++ISA+G 
Sbjct: 184 YQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGK 243

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
               +   + ++E    G++   +    L   Y + G  ++  +++  M+ R   PTV T
Sbjct: 244 LNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYT 303

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I   GK+G +E     +K M   G KP+ +   +L++   ++  + +   +  ++ 
Sbjct: 304 YTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMR 363

Query: 389 NSDVILDTPFFNCII-SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
             +   +   +N II S +       +       MK+   VP + T++ +I  +      
Sbjct: 364 LLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRV 423

Query: 448 EAAQNLENKM 457
           E A  L  +M
Sbjct: 424 EKALLLLEEM 433



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 37/188 (19%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K+++ A ++F  L++     +  + +  ++   GKC +  +A  LF  M   G  P V
Sbjct: 454 KAKRYEAANELFQELKEN-CGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDV 512

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK------------ 197
             Y AL++   ++ ++DEAFS    M+  + C PD+ +++I++    +            
Sbjct: 513 YAYNALITGMVRADMMDEAFSLFRTMEE-NGCNPDINSHNIILNGLARTGGPKRAMEMFA 571

Query: 198 --------------------FHRFDLIE---KILAEMSYLGIECSAVTYNTIIDGYGKAK 234
                                 R  L E   K++ EM+  G E   +TY++I++  GK  
Sbjct: 572 KMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVD 631

Query: 235 KFEEMESS 242
           +   M  S
Sbjct: 632 EDRNMAES 639


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 154/352 (43%), Gaps = 6/352 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T T ++  L    + + A  L E ML  G+  +   Y+ALV    +   LDEA + +   
Sbjct: 186 TLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGE 245

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     PD+ TYS +I    K  R      I  EMS      +A+TYN++I GY +A  
Sbjct: 246 VTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGD 302

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       MV+   C PD+ T  +++SA+   G ++   + + +     +  D+ T  
Sbjct: 303 MDEAIRLLGKMVDDN-CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFT 361

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L       G  +    +++ + +R   PT+ TYN V++ + K+  + K EE     + R
Sbjct: 362 SLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSR 421

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFFNCIISAYGQAGDVE 413
           G  PN++TY  LV+   +AG   +    L Q+  E          +  I+ A  + G  +
Sbjct: 422 GFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTD 481

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
              + +  M +R  VP   TFAT++ A       + A  L  +MI      G
Sbjct: 482 DAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 533



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 5/359 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE-QASLLFEVMLSDGLKPSVDV 151
           K +L  +  GLL   +       T    +V+ G C+    + +L     ++D   P    
Sbjct: 92  KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLT 151

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           YT LV    ++G L +A   + +M S     PD  T +++++S     R D   +++ EM
Sbjct: 152 YTKLVHGLSKAGRLRDAVQVLQEMVSARHV-PDNTTLTVVVQSLCLGDRVDDARELVEEM 210

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
            + G+  +A+TY+ ++DG  K ++ +E  +     V   G  PDI T +++I     +G 
Sbjct: 211 LHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGR 270

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +      + E   M       T N L   Y RAG  D+   ++  M      P V+TY  
Sbjct: 271 LRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTT 327

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++  F K G ++   E F++M    + P+ +T+ SLV      G +     +L ++    
Sbjct: 328 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG 387

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
                  +NC++  Y ++  V K  EL    + R  VP+ +T+  ++      G T+ A
Sbjct: 388 CPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 446



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 7/305 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K  +   A  +FE M      P+   Y +L+  Y ++G +DEA   +  M
Sbjct: 257 TYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKM 313

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +C PDV TY+ L+ +  K  R D   ++  +M    +    VT+ +++DG     +
Sbjct: 314 VD-DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGR 372

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       +   G C P I+T N ++  Y  S  + K E+   +F   G   +  T N
Sbjct: 373 MEDALELLEEITRRG-CPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYN 431

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFF-FPT-VVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           IL     RAG  D+    +D +       PT V  Y I+++   + G  +   +++++M 
Sbjct: 432 ILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMI 491

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            RG  P + T+ ++V A  KA    +   +L ++            + ++SAY +AG ++
Sbjct: 492 QRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQ 551

Query: 414 KMGEL 418
           K  EL
Sbjct: 552 KADEL 556



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 14/304 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  + + A+ IF    ++        T+  L+    +    ++A  L   M+ D 
Sbjct: 262 IDGLCKAGRLRDAVDIF----EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN 317

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P V  YT L+SA+ + G LD+A+     M + +   PDV T++ L+       R +  
Sbjct: 318 CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVA-NKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKA---KKFEEMESSFSAMVESGGCHPDIFTLNS 261
            ++L E++  G   +  TYN ++DGY K+   +K EE+ + F     S G  P+  T N 
Sbjct: 377 LELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADF----RSRGFVPNTVTYNI 432

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           +++    +G  ++  ++ ++ N  G      +    I+  +  R G  D      + M +
Sbjct: 433 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 492

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R + P   T+  V+    KA   ++  E  ++M   G  P   T  ++VSAY +AG+I K
Sbjct: 493 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQK 552

Query: 380 VDSI 383
            D +
Sbjct: 553 ADEL 556



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 2/239 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T LM    K  + + A  LF+ M+++ L P V  +T+LV      G +++A   + ++
Sbjct: 324 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P +YTY+ ++    K ++    E+++A+    G   + VTYN ++ G  +A +
Sbjct: 384 TR-RGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGR 442

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMI-SAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            ++       +   GG  P    + ++I  A    G  +   ++Y E    G      T 
Sbjct: 443 TDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATF 502

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
             +  +  +A    +   +++ M K    P   T + V+  + +AG I+K +E   +++
Sbjct: 503 ATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 4/171 (2%)

Query: 117 FTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T   V+ G CK  Q  +A  L     S G  P+   Y  LV+   ++G  D+A   ++ 
Sbjct: 393 YTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQ 452

Query: 175 MKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           + S    C   V  Y+I++ +  +  R D   +   EM   G   +A T+ T++    KA
Sbjct: 453 LNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKA 512

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            + ++       M++ G   P   T ++++SAY  +G I+K ++  +E  L
Sbjct: 513 HQPQQAHELLEEMIKYGH-TPGPGTCDAVVSAYCRAGMIQKADELASELRL 562



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q+ Y     TF  ++  L K  QP+QA  L E M+  G  P      A+VSAY ++G++ 
Sbjct: 492 QRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQ 551

Query: 167 EAFSTINDMKSVSD 180
           +A    ++++  +D
Sbjct: 552 KADELASELRLYTD 565



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  +I    KA  +++       MK RGM P ++ +  ++    +AG +     + RQ+
Sbjct: 82  TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM 141

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            ++    D   +  ++    +AG +    ++   M     VPDN T   ++Q+       
Sbjct: 142 NDAHPP-DFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 200

Query: 448 EAAQNLENKMI 458
           + A+ L  +M+
Sbjct: 201 DDARELVEEML 211


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 158/325 (48%), Gaps = 9/325 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ  +  A ++FG +  ++ Y     + T LM   GK KQ  +A  +F  MLS G +PS 
Sbjct: 152 KQGDFNKAERVFGDM-HKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSA 210

Query: 150 DVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
             Y  ++  + +     EA   F T+ D +  S  KPD   + ++I    K   ++   K
Sbjct: 211 LTYQLILKIFVEGNKFKEAEETFETLLDDEK-SPLKPDQKMFHMMIYMYRKAGNYEKARK 269

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           I   M   G+  S VTYN+++        ++E+  ++  M +  G  PD+ +   +I+AY
Sbjct: 270 IFGLMRERGVPQSTVTYNSLMSF---ETNYKEVSKTYDQM-QRAGLRPDVVSYALLINAY 325

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G +   E+    + E    GV+   +  NIL  ++  +GM D+ R+V   M++    P +
Sbjct: 326 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDI 385

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            +Y  ++  +  A  +E  E++F+++K  G +PN +TY +L+  Y+K   + K+     +
Sbjct: 386 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEE 445

Query: 387 VENSDVILDTPFFNCIISAYGQAGD 411
           ++   +  +   +  ++ AYG+  D
Sbjct: 446 MQVHGIKANQAIYTAMMDAYGKNKD 470



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 175/368 (47%), Gaps = 14/368 (3%)

Query: 83  EALDEAIKQKKWQLALK-IFGLLRQQQWYQARCQTFTKLMVM--LGKCKQPEQASLLFEV 139
           +A DEA +Q+KW+  +K I  +         + Q   + +V+  L + KQ ++ SL+ E+
Sbjct: 68  DAADEA-EQRKWRRMMKEIEEVGSAVSVLSTKNQALPRDLVLGTLVRFKQLKKWSLVSEI 126

Query: 140 MLSDGLKPSVDV----YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +     +P  D     +  LV+AYG+ G  ++A     DM       P V +++ L+++ 
Sbjct: 127 LEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVFGDMHK-KGYSPSVISHTALMEAY 185

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--ESGGCH 253
            K  +++  E +   M   G E SA+TY  I+  + +  KF+E E +F  ++  E     
Sbjct: 186 GKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLK 245

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD    + MI  Y  +GN EK  K +      GV     T N L         Y ++   
Sbjct: 246 PDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSLMSFETN---YKEVSKT 302

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            D MQ+    P VV+Y ++I  +GKA   E+    F++M   G++P    Y  L+ A++ 
Sbjct: 303 YDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 362

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +G++ +  ++ + +       D   +  ++SAY  A D+E   + F  +K+    P+ +T
Sbjct: 363 SGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVT 422

Query: 434 FATMIQAY 441
           + T+I+ Y
Sbjct: 423 YGTLIKGY 430



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 164/355 (46%), Gaps = 12/355 (3%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   L+ Q W+      F  L+   GK     +A  +F  M   G  PSV  
Sbjct: 118 KKWSLVSEILEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVIS 177

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +TAL+ AYG+    ++A S    M S S  +P   TY +++K   + ++F   E+    +
Sbjct: 178 HTALMEAYGKGKQYNKAESVFRRMLS-SGPEPSALTYQLILKIFVEGNKFKEAEETFETL 236

Query: 212 SYLGIECSAVT-----YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
             L  E S +      ++ +I  Y KA  +E+    F  M E G     + T NS++S  
Sbjct: 237 --LDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTV-TYNSLMSF- 292

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
               N +++ K Y++    G++ D+ +  +L  +YG+A   ++  +V + M      PT 
Sbjct: 293 --ETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 350

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
             YNI+++ F  +G +++    FK M+     P+  +Y +++SAY  A  +   +   R+
Sbjct: 351 KAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRR 410

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++      +   +  +I  Y +  ++EKM E +  M+      +   +  M+ AY
Sbjct: 411 LKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAY 465



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 2/182 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+   GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SG++D+A +    M
Sbjct: 317 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSM 376

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C PD+ +Y+ ++ +       +  EK    +   G E + VTY T+I GY K   
Sbjct: 377 RR-DRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISN 435

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+M   +  M +  G   +     +M+ AYG + +      W+ E    GV  D +  N
Sbjct: 436 LEKMMEKYEEM-QVHGIKANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATN 494

Query: 296 IL 297
           IL
Sbjct: 495 IL 496


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 189/417 (45%), Gaps = 18/417 (4%)

Query: 46  EAEKDLSKILRT--EFAIKNIEKKVSSKKYKNLWPKPVLE--------ALDEAIKQKKWQ 95
           E E  L  I R    F + N  ++    +   +   P++E        A+    + ++W+
Sbjct: 184 EEEDGLHAIDRALVNFVLYNCMRRRDWTRALTVLDAPLIEVDVVGFTMAIKACGQARRWR 243

Query: 96  LALKIFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
            AL   G+LR+ Q    R    +F   M  LGK  Q + A  LF  +   G  P++  Y 
Sbjct: 244 EAL---GVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYN 300

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
             + A G++G++D A   + +M+ +S  +PD  +Y+ ++ +  K +++    ++LAEM  
Sbjct: 301 TAIHACGRAGMVDRAHELLREMQGLS-VRPDSVSYNTVMAAFAKKNQWKAALELLAEMKE 359

Query: 214 L-GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G++   ++YNT +    KA ++E      +  +  G   PD+ + N+++ A G +G  
Sbjct: 360 APGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQG-LQPDVVSYNTVMHACGRAGEY 418

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +    +     +GV  D  + N    +  RA  +     ++  M+ R   P V +Y I 
Sbjct: 419 LQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIA 478

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           ++  G+AG  E+  E  ++M+ RG+  N  TY + + A  + G + +V  +L +++   V
Sbjct: 479 VDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGV 538

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +   +   + A  + G  ++   +   M +R    D++++ T +      G  E 
Sbjct: 539 EPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAGDEEG 595



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 173/389 (44%), Gaps = 20/389 (5%)

Query: 82  LEALDEAI---------KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQ 132
           L A+D A+         +++ W  AL +          +     FT  +   G+ ++  +
Sbjct: 189 LHAIDRALVNFVLYNCMRRRDWTRALTVL----DAPLIEVDVVGFTMAIKACGQARRWRE 244

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYS 189
           A  +   M + GL+P +  +   + A G++G  D   E F+ I D        P++ +Y+
Sbjct: 245 ALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIED----HGFAPNLVSYN 300

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
             I +C +    D   ++L EM  L +   +V+YNT++  + K  +++      + M E+
Sbjct: 301 TAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEA 360

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
            G  PD+ + N+ +     +G  E+  +   E    G++ D+ + N +  + GRAG Y +
Sbjct: 361 PGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQ 420

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
              +   M++    P  V++N  +    +A   +   +  ++M+ R + PN  +Y   V 
Sbjct: 421 ALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVD 480

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           A  +AG   +   ++ ++E   V  +   +   + A  + G V+++  L   M  +   P
Sbjct: 481 ACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEP 540

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKMI 458
           + +++   + A N +G  + A  +  +M+
Sbjct: 541 NVVSYTIAMDAMNRVGKWDRASAVLEQMV 569


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY
Sbjct: 201 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG V     L   +K     PDNI     I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 300



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 134/274 (48%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F +  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M  + G  P+  + +++++ Y  +    +    + E   +    D+ T NI+   YG+
Sbjct: 64  SEM-RTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K ++++++++N  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D + + TMI AY   G+   A+ L +++
Sbjct: 243 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 162/363 (44%), Gaps = 11/363 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K    A  L   M + G+ P+   Y+ L+
Sbjct: 24  AISIFSRLKRSG-FMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLL 82

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S   +M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 83  TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 141

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           E + V+YNT++  YG A+ F E    F  M +      ++ T NSM+  YG +   EK  
Sbjct: 142 EPNVVSYNTLLRVYGDAELFGEAIHLFRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIE 334
               E    G++ +  T + +   +G+ G  D  R+ M F + R     +  V Y  +I 
Sbjct: 201 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIV 258

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            + +AG +     + K++ H   +P++I     +   + AG I +   + RQ  ++  + 
Sbjct: 259 AYERAGLVA----HAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVK 314

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   F  +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++ 
Sbjct: 315 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 374

Query: 455 NKM 457
            +M
Sbjct: 375 MEM 377



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/380 (19%), Positives = 160/380 (42%), Gaps = 74/380 (19%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ +  K     +A  +F  +   G  P +  Y A+++ +G++ L  +A S I++M+
Sbjct: 8   YSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMR 67

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + +   P+  +YS L+    +  +F     + AEM  +       T N +ID YG+    
Sbjct: 68  T-AGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMA 126

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 293
           +E +  F  M    G  P++ + N+++  YG++   E   +  + F LM    ++ ++ T
Sbjct: 127 KEADKLFWGM-RKMGIEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +   YG+   ++K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 354 HRGMKPNSITYCSLVSAYSK-------------------------------AGLIMKVDS 382
             G+  + + Y +++ AY +                               AG I +   
Sbjct: 243 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATW 302

Query: 383 ILRQVENSDVILDTPFFN-----------------------------------CIISAYG 407
           + RQ  ++  + D   F                                     +++AYG
Sbjct: 303 VFRQAIDAGXVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYG 362

Query: 408 QAGDVEKMGELFLTMKERHC 427
           +  + +K  ++++ M+E  C
Sbjct: 363 KLHEFDKANDVYMEMQEVGC 382



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 6/181 (3%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q +  +    T++ ++ + GK  + ++A++LF+ + S G+     +Y  ++ AY ++GL+
Sbjct: 207 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLV 266

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
             A   ++++K     +PD     I I       R +    +  +    G       +  
Sbjct: 267 AHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDITVFER 321

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I  + K KK+  +   F  M    G  PD   +  +++AYG     +K    Y E   +
Sbjct: 322 MIHLFSKYKKYGNVVEVFDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEV 380

Query: 286 G 286
           G
Sbjct: 381 G 381


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 123 MLGKCKQPEQASLLFEVMLSDGLK--------PSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +LG   +P  A+ L +++    L         PSV  +  L+S     GLLD+A   +  
Sbjct: 101 LLGAGHRPHLAASLVDILHRAALALGPHRSALPSV--FDTLLSLLADHGLLDDAVRALAR 158

Query: 175 MKSVS------DCK------------------------PDVYTYSILIKSCTKFHRFDLI 204
           ++ +        C                         P+V+T++I+I    K       
Sbjct: 159 VRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEA 218

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +   M  +G     VTYN++IDGYGK  + EE+E   S M +SG C  D+ T N++I+
Sbjct: 219 RALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG-CAADVVTYNALIN 277

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +   G IEK   ++ E   +GV A++ TL+    ++ + G+  +   +   M+ R   P
Sbjct: 278 CFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMP 337

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
              TY  +++   KAG ++       +M H+G+ PN +TY  +V    K G +   D +L
Sbjct: 338 NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVL 397

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             +E + V  +   +  +I  +    + E+  +L   MK +    D   + T+I     +
Sbjct: 398 SLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKV 457

Query: 445 GMTEAAQNLENKM 457
              + A++L +KM
Sbjct: 458 QKLDEAKSLLHKM 470



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 156/377 (41%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   GKC + E+  LL   M   G    V  Y AL++ + + G +++A+S   +M
Sbjct: 236 TYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEM 295

Query: 176 KSV--------------SDCK--------------------PDVYTYSILIKSCTKFHRF 201
           K +              + CK                    P+ +TY+ L+    K  R 
Sbjct: 296 KRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 355

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           D    +L EM + G+  + VTY  ++DG  K  K    +   S M E  G   +     +
Sbjct: 356 DDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM-ERAGVKANELLYTT 414

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I  +  + N E+     NE    G++ D+     L     +    D+ +S++  M    
Sbjct: 415 LIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCG 474

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  V Y  +++ F KAG   +      K+   G++PN +TYC+L+    KAG I +  
Sbjct: 475 LRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAI 534

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           S   ++    +  +   +  +I  + + G + K   L   M ++    D + + ++I  +
Sbjct: 535 SHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGH 594

Query: 442 NALGMTEAAQNLENKMI 458
              G  + A  L+ KMI
Sbjct: 595 MKQGDLQGAFALKAKMI 611



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 170/394 (43%), Gaps = 39/394 (9%)

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAY 159
           GL+R+   +      FT  +V+   CKQ E  +A  LF  M + G  P V  Y +L+  Y
Sbjct: 185 GLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGY 244

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
           G+ G L+E    +++M+  S C  DV TY+ LI   +KF   +       EM  LG+  +
Sbjct: 245 GKCGELEEVELLVSEMRK-SGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMAN 303

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            VT +T +D + K     E    F+ M    G  P+ FT  S++     +G ++      
Sbjct: 304 VVTLSTFVDAFCKEGLVREAMKLFAQM-RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLL 362

Query: 280 NEFNLMGVKADIQTLNILTKSY---GRAGMYDKMRSVMD------------------FMQ 318
           +E    G+  ++ T  ++       G+  + D + S+M+                  FM 
Sbjct: 363 DEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMN 422

Query: 319 K--------------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           K              +     V  Y  +I    K   +++ +    KM   G++PN++ Y
Sbjct: 423 KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +++ A+ KAG   +  ++L ++ +S +  +   +  +I    +AG + +    F  M+E
Sbjct: 483 TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRE 542

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
               P+   + T+I  +  +G    A +L N+M+
Sbjct: 543 LGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMV 576



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 127 CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+    +A  LF  M   G+ P+   YT+LV    ++G LD+A   +++M       P+
Sbjct: 315 CKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH-QGLVPN 373

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY++++    K  +  + + +L+ M   G++ + + Y T+I G+   K  E      +
Sbjct: 374 VVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLN 433

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M ++ G   D+    ++I        +++ +   ++ +  G++ +      +  ++ +A
Sbjct: 434 EM-KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKA 492

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G   +  +++  +      P VVTY  +I+   KAG I +   +F KM+  G+ PN   Y
Sbjct: 493 GKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVY 552

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+  + K G + K   ++ ++ +  + LD   +  +I  + + GD++    L   M E
Sbjct: 553 TTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIE 612

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
                D   +   I  +  + M + A+ + ++MI       K    C
Sbjct: 613 TGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNC 659



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 7/375 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLS 142
           +D   K+   + A+K+F  +R +         FT   ++ G CK  + + A +L + M+ 
Sbjct: 311 VDAFCKEGLVREAMKLFAQMRVRGMMP---NEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 367

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            GL P+V  YT +V    + G +  A   ++ M+  +  K +   Y+ LI         +
Sbjct: 368 QGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMER-AGVKANELLYTTLIHGHFMNKNSE 426

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               +L EM   G+E     Y T+I G  K +K +E +S    M +  G  P+     ++
Sbjct: 427 RALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKM-DDCGLRPNTVIYTTI 485

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + A+  +G   +     ++    G++ ++ T   L     +AG   +  S  D M++   
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P V  Y  +I+ F K G + K      +M  +GM  + + Y SL+  + K G +    +
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFA 605

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  ++  + + LD   + C IS +     +++   +   M      PD   +  +I+ Y 
Sbjct: 606 LKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQ 665

Query: 443 ALGMTEAAQNLENKM 457
            LG  E A +L+N+M
Sbjct: 666 KLGNMEEASSLQNEM 680


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 152  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            Y AL+       L+D A    ++MK +  C PD +TY +++ +  K  R + + KI  EM
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 827

Query: 212  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               G + + VTYNTII G  K+K  +E  + +  ++ S G  P   T   ++      GN
Sbjct: 828  HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM-SEGFSPTPCTYGPLLDGLLKDGN 886

Query: 272  IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            IE  E  ++E    G + +    NIL   Y  AG  +K+  + + M ++   P + +Y +
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            VI+T    G +     YFK++   G++P+ ITY  L+    K+G + +  S+   +E   
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 392  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
            +  +   +N +I   G+AG   + G+++  +  +   P+  T+  +I+ Y+  G  E A 
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 1066

Query: 452  NLENKMI 458
                +MI
Sbjct: 1067 AAYGRMI 1073



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  +++ M +DG+ P+V  Y+ L+ A+G+    +     + +M
Sbjct: 173 TYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEM 232

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++    +P+VY+Y+I I+   +  R +   +IL +M   G +   VT   +I     A +
Sbjct: 233 EA-RGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGR 291

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M  S    PD  T  +++   G+SG+   + + +N     G   ++ +  
Sbjct: 292 LADAKDVFWKMKASDQ-KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYT 350

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               +  + G  D+   V D M+++   P   +YN +I  F KA    +  E F  M   
Sbjct: 351 AAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIH 410

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN  T+   ++ + K+G  +K       +++  ++ D    N ++    + G +   
Sbjct: 411 GPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMA 470

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  +K     PDNIT+  MI+  +     + A  +  +MI
Sbjct: 471 KRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 165/385 (42%), Gaps = 40/385 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LM+  GK +  E    L   M + G++P+V  YT  +   GQ+G L+EA+  +  
Sbjct: 207 RTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRK 266

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--- 231
           M+    CKPDV T ++LI+      R    + +  +M     +   VTY T++D  G   
Sbjct: 267 MEE-EGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSG 325

Query: 232 ------------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLN 260
                       KA  + +   S++A V++                    G  P  ++ N
Sbjct: 326 DSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYN 385

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           S+IS +  +    +  + +N  N+ G   +  T  +    +G++G   K     + M+ +
Sbjct: 386 SLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSK 445

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VV  N V+    K G +   +  F ++K  G+ P++ITY  ++   SKA    + 
Sbjct: 446 GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEA 505

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I  ++  +    D    N +I    +AG   +  ++F  +KE +  P + T+ T++  
Sbjct: 506 MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAG 565

Query: 441 YNALG-MTEAAQNLENKMIAMKENS 464
               G + E  Q LE     M  NS
Sbjct: 566 LGREGKVKEVMQLLE----GMNSNS 586



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+   G        S ++  + +DG   +V  YTA V A  Q G +DEA    ++M
Sbjct: 313 TYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEM 372

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K      P  Y+Y+ LI    K  RF+   ++   M+  G   +  T+   I+ +GK+ +
Sbjct: 373 KQ-KGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGE 431

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    +  M +S G  PD+   N+++     +G +   ++ ++E   MG+  D  T  
Sbjct: 432 SLKALKRYELM-KSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYT 490

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++ K   +A   D+   +   M +    P V+  N +I+   KAG   +  + F ++K  
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P   TY +L++   + G + +V  +L  + ++    +   +N ++    + G+V   
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++  +M    C+PD  ++ T++
Sbjct: 611 LDMLYSMTMNGCMPDLSSYNTVM 633



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 127/298 (42%), Gaps = 15/298 (5%)

Query: 84  ALDEAIKQKKWQLALKIF------GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLF 137
           A+D   +  +   AL +F      G++ QQ  Y +    F K         +  +A  LF
Sbjct: 352 AVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLK-------ADRFNRALELF 404

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
             M   G  P+   +   ++ +G+SG   +A      MKS     PDV   + ++    K
Sbjct: 405 NHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKS-KGIVPDVVAGNAVLYGLAK 463

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             R  + +++  E+  +GI    +TY  +I    KA   +E    F+ M+E+  C PD+ 
Sbjct: 464 TGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR-CAPDVL 522

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
            +NS+I     +G   +  K + E   M ++    T N L    GR G   ++  +++ M
Sbjct: 523 AMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
               F P ++TYN V++   K G +    +    M   G  P+  +Y +++    K G
Sbjct: 583 NSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEG 640



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 2/262 (0%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
              + Y++   T+  ++  L K K  ++A  L+  ++S+G  P+   Y  L+    + G +
Sbjct: 828  HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 887

Query: 166  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            ++A +  ++M     C+P+   Y+IL+         + + ++   M   G+     +Y  
Sbjct: 888  EDAEALFDEMLECG-CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 226  IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
            +ID      +  +  S F  + + G   PD+ T N +I   G SG +E+    YN+    
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMG-LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK 1005

Query: 286  GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            G+  ++ T N L    G+AG   +   + + +  + + P V TYN +I  +  +G  E  
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 1065

Query: 346  EEYFKKMKHRGMKPNSITYCSL 367
               + +M   G +PNS TY  L
Sbjct: 1066 FAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 8/257 (3%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           FDL+++ +       I+ +  T+ T+    G          +   M E+G    + +T N
Sbjct: 124 FDLMQRQI-------IKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAG-IVLNAYTYN 175

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I     SG   +    Y      GV   ++T ++L  ++G+    + +  ++  M+ R
Sbjct: 176 GLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEAR 235

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P V +Y I I   G+AG +E+     +KM+  G KP+ +T   L+     AG +   
Sbjct: 236 GVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADA 295

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +  +++ SD   D   +  ++   G +GD   + E++  +K      + +++   + A
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 441 YNALGMTEAAQNLENKM 457
              +G  + A ++ ++M
Sbjct: 356 LCQVGRVDEALDVFDEM 372



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 171/431 (39%), Gaps = 73/431 (16%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  +   A KIF  L++       C T+  L+  LG+  + ++   L E M S+ 
Sbjct: 528 IDMLYKAGRGNEAWKIFYELKEMNLEPTDC-TYNTLLAGLGREGKVKEVMQLLEGMNSNS 586

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P++  Y  ++    ++G ++ A   +  M +++ C PD+ +Y+ ++    K  R D  
Sbjct: 587 FPPNIITYNTVLDCLCKNGEVNYALDMLYSM-TMNGCMPDLSSYNTVMYGLVKEGRLDEA 645

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------------------------ME 240
             +  +M  + +     T  TI+  + ++   +E                        ME
Sbjct: 646 FWMFCQMKKV-LAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLME 704

Query: 241 S-----------SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                        F+  + S G   D   L+ +I  +          +   +F  +GV  
Sbjct: 705 GILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSL 764

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
              + N L        + D    +   M++    P   TY+++++  GK+  IE M +  
Sbjct: 765 KTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQ 824

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMK-----------------------VDSILR- 385
           ++M ++G K   +TY +++S   K+ ++ +                       +D +L+ 
Sbjct: 825 EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 884

Query: 386 -QVENSDVILD----------TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
             +E+++ + D             +N +++ Y  AGD EK+ ELF +M E+   PD  ++
Sbjct: 885 GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 944

Query: 435 ATMIQAYNALG 445
             +I    A G
Sbjct: 945 TVVIDTLCADG 955



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%)

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           ++ T  ++  A G  G +             G+  +  T N L     ++G   +   V 
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M      PTV TY++++  FGK    E +     +M+ RG++PN  +Y   +    +A
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +   ILR++E      D      +I     AG +    ++F  MK     PD +T+
Sbjct: 255 GRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTY 314

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
            T++      G + +   + N + A
Sbjct: 315 ITLLDKCGDSGDSRSVSEIWNALKA 339



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           ++ A+G  G++ ++      F+LM    +KA++ T   +  + G  G        +  M+
Sbjct: 110 LMRAHGRVGDVAQV------FDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMK 163

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +        TYN +I    K+G   +  + +K M   G+ P   TY  L+ A+ K     
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAE 223

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
            V  +L ++E   V  +   +   I   GQAG +E+   +   M+E  C PD +T   +I
Sbjct: 224 TVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLI 283

Query: 439 QAYNALGMTEAAQNLENKMIA 459
           Q     G    A+++  KM A
Sbjct: 284 QILCDAGRLADAKDVFWKMKA 304


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 163/381 (42%), Gaps = 59/381 (15%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A  +   M+S G  P    Y+ ++     +  +D AF    +MKS +   PDV+TY+I
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTI 520

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI S  K        K   EM   G   + VTY  +I  Y KA+K       F  M+ S 
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML-SE 579

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----------- 299
           GC P++ T  ++I  +  SG IEK  + Y     M   ADI  +++  K           
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYAR---MRGNADIPDVDMYFKIDDGNIRDPNI 636

Query: 300 -SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            +YG       +A    + R ++D M      P  + Y+ +I+ F K G +++ +  F K
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696

Query: 352 MKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPF--------- 398
           M  RG  PN  TY SL+   +    L + +  + R +ENS   +VI+ T           
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 399 ----------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                                 +  +I  +G+AG V+K  EL   M  + C P+ +T+  
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +I    A G+ + A  L ++M
Sbjct: 817 LINHCCAAGLLDDAHQLLDEM 837



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 18/333 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  L +VM  +G +P+  VY AL+  + + G LDEA      M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S     P+VYTYS LI    K  R DL  K+L+ M       + + Y  +IDG  K  K
Sbjct: 698 -SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     S M+E  GCHP++ T  +MI  +G +G ++K  +   +    G   +  T  
Sbjct: 757 TDEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYR 815

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFK 350
           +L      AG+ D    ++D M++ ++   +  Y  VIE F +      G ++++ E   
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
                   P    Y  L+ ++ KAG   L +++   +    +     D   ++ +I +  
Sbjct: 876 V-------PIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAA-DKDLYSSLIESLS 927

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            A  V+K  EL+  M +R  +P+   F  +++ 
Sbjct: 928 LASKVDKAFELYADMIKRGGIPELSIFFYLVKG 960



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG+CK+      +  +M+++G  PS  ++ +L+ AY +SG    A+  +  M     C+P
Sbjct: 350 LGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQP 402

Query: 184 DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
               Y+ILI       +       +L EK   EM    +  + V  + +      A KFE
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +  S    M+ S G  PD  T + +I    N+  ++     + E     V  D+ T  IL
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             S+ + G+  + R   D M +    P VVTY  +I  + KA  +    E F+ M   G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDV-------------ILDTPFF--NC 401
            PN +TY +L+  + K+G I K   I  R   N+D+             I D   F    
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++    +A  V++  +L   M    C P++I +  +I  +  +G  + AQ +  KM
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 12/315 (3%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +YT ++S   ++ L +EA   ++ M+S S C P+V TY IL+  C +  +    ++IL+ 
Sbjct: 301 IYTQMISGLCEASLFEEAMDFLSRMRS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S   +N++I  Y ++  +         M + G C P     N +I   G  G
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQPGYVVYNILIG--GICG 416

Query: 271 N--------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           N        +E  EK Y E     V  +   ++ L +    AG ++K  S++  M  + F
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P   TY+ VI     A  ++     F++MK   + P+  TY  L+ ++ K GL+ +   
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARK 536

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++       +   +  +I AY +A  +    ELF  M    C+P+ +T+  +I  + 
Sbjct: 537 WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 443 ALGMTEAAQNLENKM 457
             G  E A  +  +M
Sbjct: 597 KSGQIEKACQIYARM 611



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 170/387 (43%), Gaps = 66/387 (17%)

Query: 102 GLLRQ-QQWYQARCQ--------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GLL+Q ++W+    +        T+T L+    K ++   A+ LFE+MLS+G  P+V  Y
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDC---------------KPDVYTYSILIKSCTK 197
           TAL+  + +SG +++A      M+  +D                 P+++TY  L+    K
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+      +L  MS  G E + + Y+ +IDG+ K  K +E +  F+ M E G   P+++
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY-GPNVY 707

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T +S+I            ++ + +  L                       D    V+  M
Sbjct: 708 TYSSLI------------DRLFKDKRL-----------------------DLALKVLSRM 732

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +    P V+ Y  +I+   K G  ++       M+ +G  PN +TY +++  + KAG +
Sbjct: 733 LENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K   ++RQ+       +   +  +I+    AG ++   +L   MK+ +       +  +
Sbjct: 793 DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 438 IQAYN-----ALG-MTEAAQNLENKMI 458
           I+ +N     +LG + E A+N+   +I
Sbjct: 853 IEGFNREFIISLGLLDEIAENVAVPII 879



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           ++++   G  GN    E++  E      +   + LN+L +   R G+++     +  ++ 
Sbjct: 166 HALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKD 225

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P+ +TYN ++  F +A  ++      ++M   G   +  T    V    KAG   +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---R 282

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               L  +E  +  LDT  +  +IS   +A   E+  +    M+   C+P+ +T+  ++
Sbjct: 283 WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 39/250 (15%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++LI+ C +   +++  + L  +  LG + S +TYN ++  + +A + +        M +
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           SG                               FN+ G      TL        +AG   
Sbjct: 261 SG-------------------------------FNMDG-----YTLGCFVHLLCKAG--- 281

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           + R  +  ++K  F    V Y  +I    +A   E+  ++  +M+     PN +TY  L+
Sbjct: 282 RWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               +   + +   IL  +           FN +I AY ++GD     +L   M +  C 
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 429 PDNITFATMI 438
           P  + +  +I
Sbjct: 402 PGYVVYNILI 411


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 148/332 (44%), Gaps = 40/332 (12%)

Query: 117 FTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G C+   P+QA  +F+  L  GL+PS+ VY  L+    Q GL+  A   +N+
Sbjct: 436 FTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNE 495

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M     CKPD++T                                   YN II+G  K  
Sbjct: 496 MAE-KGCKPDIWT-----------------------------------YNLIINGLCKMG 519

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              +        + + GC PDIFT N+++  Y     ++   +  N     G+  D+ T 
Sbjct: 520 CLSDANHLIGDAI-TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITY 578

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L     +    +++  +   M ++   P ++TYN +IE+   +  + +  +   +MK 
Sbjct: 579 NTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKS 638

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVE 413
           +G+ P+ +++ +L++ + K G +     + R +E   DV   T  +N IISA+ +  +++
Sbjct: 639 KGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMK 698

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALG 445
               LF  MK+  C PDN T+  +I  +   G
Sbjct: 699 MALRLFSEMKKNGCDPDNYTYRVLIDGFCKTG 730



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            + + M   G+  + ++A   FE M      PSV  Y A+++   + G  ++A      M
Sbjct: 157 VYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRM 216

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     + DVYTY+I IKS  +  R     ++L  M  LG   +AV Y T++ G+ +   
Sbjct: 217 KD-KKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGD 275

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     F  M+E   C PD+ T N ++ A    G + + E+ +++    GV  ++ T N
Sbjct: 276 NDRARELFDEMLECCLC-PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFN 334

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I  +   + G  D+   ++  + +    P VVTYN VI    +   + + EE   KM + 
Sbjct: 335 IFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNG 394

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G +PN  TY S++  Y K G+++  + IL+         D   +  +++ + Q GD ++ 
Sbjct: 395 GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +F     +   P  I + T+I+     G+   A  L N+M
Sbjct: 455 MAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 147/332 (44%), Gaps = 5/332 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  LF+ ML   L P V  +  LV A  + G + E+    + +     C P+++T++I
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVC-PNLFTFNI 335

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
            I+   K    D   ++L  +S  G+    VTYNT+I G  +  +  E E     MV +G
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMV-NG 394

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P+ FT NS+I  Y   G +    +   +    G K D  T   L   + + G  D+ 
Sbjct: 395 GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
            +V      +   P+++ YN +I+   + G I    +   +M  +G KP+  TY  +++ 
Sbjct: 455 MAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIING 514

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K G +   + ++        I D   +N ++  Y +   ++   EL   M  +   PD
Sbjct: 515 LCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPD 574

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
            IT+ T++   N L  T  ++ +     AM E
Sbjct: 575 VITYNTLL---NGLCKTAKSEEVMEIFKAMTE 603



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 35/376 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF KL+  L K     ++  LF+ +L  G+ P++  +   +    + G LD A   +  +
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCV 356

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-- 233
            S    +PDV TY+ +I    +  R    E+ L +M   G E +  TYN+IIDGY K   
Sbjct: 357 -SREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGM 415

Query: 234 -------------KKFEEMESSFSAMVES-------------------GGCHPDIFTLNS 261
                        K F+  E ++ ++V                      G  P I   N+
Sbjct: 416 VVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNT 475

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I      G I    +  NE    G K DI T N++     + G       ++     + 
Sbjct: 476 LIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P + TYN +++ + +   ++   E   +M  +GM P+ ITY +L++   K     +V 
Sbjct: 536 CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM 595

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I + +       +   +N II +   +  V +  +L   MK +   PD ++F T+I  +
Sbjct: 596 EIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGF 655

Query: 442 NALGMTEAAQNLENKM 457
             +G  + A  L   M
Sbjct: 656 CKVGDLDGAYGLFRGM 671



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 124/286 (43%), Gaps = 18/286 (6%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG--------YGKA 233
           K  ++TY  +++      +F+ +E +L+EM        +   NT+++G        YG+ 
Sbjct: 116 KHTLFTYKSMLQKLGFHGKFNEMENLLSEMR-------SNLDNTLLEGVYVEAMRFYGRK 168

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K +E   +F  M +   C P +++ N++++     G   +  K Y       V++D+ T
Sbjct: 169 GKIQEAVDTFERM-DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYT 227

Query: 294 LNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             I  KS+ R G  Y  +R + + M     F   V Y  V+  F + G  ++  E F +M
Sbjct: 228 YTIRIKSFCRTGRPYAALRLLRN-MPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
               + P+  T+  LV A  K G +++ + +  +V    V  +   FN  I    + G +
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSL 346

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++   L   +      PD +T+ T+I           A+   +KM+
Sbjct: 347 DRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMV 392



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 19/302 (6%)

Query: 80  PVLEALDE----AIKQKKWQLALKIFGLLRQQQWYQAR----------C--QTFTKLMVM 123
           P L+ ++E      K   W   L I GL +      A           C    FT   ++
Sbjct: 488 PALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLV 547

Query: 124 LGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
            G C+Q   + A  L   M S G+ P V  Y  L++   ++   +E       M     C
Sbjct: 548 DGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTE-KGC 606

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P++ TY+ +I+S     + +    +L EM   G+    V++ T+I G+ K    +    
Sbjct: 607 APNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYG 666

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M +         T N +ISA+    N++   + ++E    G   D  T  +L   +
Sbjct: 667 LFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGF 726

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            + G  ++    +    ++ F P++ T+  V+        +++       M  + + P++
Sbjct: 727 CKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDT 786

Query: 362 IT 363
           + 
Sbjct: 787 VN 788


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 171/370 (46%), Gaps = 7/370 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL + + Y  +  T     V+ G C  +Q E+A  L   ML     P    +  +V++  
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLC 507

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           Q GL+D A   +  M S + C PD+ TY+ +I         D   ++L+++   G +   
Sbjct: 508 QKGLVDRAIRVVEQM-SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDI 566

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VT+NT++ G     ++E+ E   + M+ S  C PD  T N++I++    G + +  +   
Sbjct: 567 VTFNTLLKGLCGVDRWEDAEQLMANMMRSN-CPPDELTFNTVITSLCQKGLLTQAIETLK 625

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
                G   +  T +I+  +  +AG       ++  M      P ++TYN VI    KAG
Sbjct: 626 IMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN--GTPDLITYNTVISNLTKAG 683

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +E+  +  + M   G+ P++ TY SL     +     +   +LR+V+++ +  DT F+N
Sbjct: 684 KMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYN 743

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            ++  + +    +   + F  M    C+PD  T+  +++A    G+ + A+ L   + ++
Sbjct: 744 DVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSL 803

Query: 461 KENSGKKLIQ 470
                KKLI+
Sbjct: 804 GVLD-KKLIE 812



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 160/348 (45%), Gaps = 4/348 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L    +   A  +F+ ML  G  PSV  Y+ L+ A  +     +A + +++M
Sbjct: 253 TFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEM 312

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C+PD+ TY++LI +       D    IL+ +   G +  AVTY  ++     +++
Sbjct: 313 RA-KGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSER 371

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E+E   + M  S  C PD  T N+++++    G +++  +  +  +  G  ADI T +
Sbjct: 372 WKEVEELLAEMT-SNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYS 430

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +       G  D    ++  ++     P  + Y  V++        E+ EE   +M   
Sbjct: 431 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCS 490

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P+ +T+ ++V++  + GL+ +   ++ Q+  +    D   +NCII        ++  
Sbjct: 491 DCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDA 550

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            EL   ++   C PD +TF T+++    +   E A+ L   M  M+ N
Sbjct: 551 MELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANM--MRSN 596



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 39/374 (10%)

Query: 121 MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++   CK+    QA  L + M + G +P +  Y  L++A    G +DEA + ++++ S 
Sbjct: 291 ILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPS- 349

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM--------------------------- 211
             CKPD  TY+ ++KS     R+  +E++LAEM                           
Sbjct: 350 HGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDR 409

Query: 212 --------SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
                   S  G     VTY++I+DG     + ++     S + +S GC PD     +++
Sbjct: 410 AIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL-KSYGCKPDTIAYTTVL 468

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
               ++   E+ E+   E        D  T N +  S  + G+ D+   V++ M +    
Sbjct: 469 KGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCS 528

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P +VTYN +I+       I+   E    ++  G KP+ +T+ +L+            + +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           +  +  S+   D   FN +I++  Q G + +  E    M E  CVP++ T++ ++ A   
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 444 LGMTEAAQNLENKM 457
            G  +AA  L + M
Sbjct: 649 AGKAQAALELLSGM 662



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 10/299 (3%)

Query: 161 QSGLLDEAFSTINDMKSVS--DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Q G +DEA    + M S    +C P V   +ILIK      R    E++ A    LG   
Sbjct: 162 QRGEIDEALVLFDSMASGGGRNCPP-VVPCNILIKRLCSDGRVSDAERVFAA---LGPSA 217

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           + VTYNT+++GY +A + E+     + M       PD FT N +I A    G I      
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMPFP----PDTFTFNPLIRALCVRGRIPDALAV 273

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +++    G    + T +IL  +  +   Y +  +++D M+ +   P +VTYN++I     
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +++       +   G KP+++TY  ++ +   +    +V+ +L ++ +++   D   
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           FN I+++  Q G V++  E+   M E  CV D +T+++++     +G  + A  L +++
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 2/294 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P    +  L+ A    G + +A +  +DM     C P V TYSIL+ +  K   +     
Sbjct: 249 PDTFTFNPLIRALCVRGRIPDALAVFDDMLH-RGCSPSVVTYSILLDATCKESGYRQAMA 307

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L EM   G E   VTYN +I+        +E  +  S +  S GC PD  T   ++ + 
Sbjct: 308 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNL-PSHGCKPDAVTYTPVLKSL 366

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             S   +++E+   E        D  T N +  S  + G+ D+   V+D M +      +
Sbjct: 367 CGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADI 426

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTY+ +++     G ++   E   ++K  G KP++I Y +++          + + ++ +
Sbjct: 427 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAE 486

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +  SD   D   FN ++++  Q G V++   +   M E  C PD +T+  +I  
Sbjct: 487 MLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDG 540



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 4/322 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L +    ++A  + + M   G    +  Y++++      G +D+A   ++ +
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           KS   CKPD   Y+ ++K      +++  E+++AEM         VT+NT++    +   
Sbjct: 453 KSYG-CKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGL 511

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +        M E+G C PDI T N +I    N   I+   +  ++    G K DI T N
Sbjct: 512 VDRAIRVVEQMSENG-CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L K       ++    +M  M +    P  +T+N VI +  + G + +  E  K M   
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAEN 630

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PNS TY  +V A  KAG       +L  + N    L T  +N +IS   +AG +E+ 
Sbjct: 631 GCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLIT--YNTVISNLTKAGKMEEA 688

Query: 416 GELFLTMKERHCVPDNITFATM 437
            +L   M      PD  T+ ++
Sbjct: 689 LDLLRVMVSNGLCPDTTTYRSL 710



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 153/344 (44%), Gaps = 4/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L   ++ ++   L   M S+   P    +  +V++  Q GL+D A   ++ M
Sbjct: 358 TYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHM 417

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C  D+ TYS ++       R D   ++L+ +   G +   + Y T++ G    ++
Sbjct: 418 -SEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E  E   + M+ S  C PD  T N+++++    G +++  +   + +  G   DI T N
Sbjct: 477 WERAEELMAEMLCSD-CPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYN 535

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +          D    ++  +Q     P +VT+N +++        E  E+    M   
Sbjct: 536 CIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRS 595

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P+ +T+ +++++  + GL+ +    L+ +  +  + ++  ++ ++ A  +AG  +  
Sbjct: 596 NCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAA 655

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            EL   M      PD IT+ T+I      G  E A +L   M++
Sbjct: 656 LELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVS 697


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 178/369 (48%), Gaps = 15/369 (4%)

Query: 80  PVLEA----LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QA 133
           P ++A    LD  +K+ ++    K++G +  +    A     T   ++ G C+Q +  +A
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG---ASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             LF+ M+   + P+V +YT L+        + EA S    M++ S   P++YTY+ ++ 
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN-SGMLPNLYTYNTMMD 271

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGG 251
              K        ++  EM   G+  + VT+  +IDG  K    +EM S+   +++  S G
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFG 328

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+IF  N +I  Y  +GN+ +    ++E     +  D+ T +IL K        ++  
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M+K+ F P  VTYN +I+ + K G++EK  E   +M  +G++PN IT+ +L+  Y
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            KAG +     +  ++    ++ D   +  +I  + + G+ ++   L   M+E    P+ 
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508

Query: 432 ITFATMIQA 440
            T + +I  
Sbjct: 509 FTLSCLIDG 517



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 162/368 (44%), Gaps = 8/368 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKL----MVMLGKCKQPEQASL--LFEVMLSDGLKPSV 149
           +A    GL+ +  W   +      +    MV+ G  K+    ++  ++  M++ G  P+V
Sbjct: 134 IAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNV 193

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+    + G   +AF   ++M       P V  Y+ILI+      R    E +  
Sbjct: 194 VTYGTLIDGCCRQGDFLKAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFR 252

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G+  +  TYNT++DGY K    ++    +  M+   G  P++ T   +I     +
Sbjct: 253 TMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEML-GDGLLPNVVTFGILIDGLCKT 311

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +    K+  +    GV  +I   N L   Y +AG   +  S+   ++K    P V TY
Sbjct: 312 DEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTY 371

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           +I+I+       +E+ +   ++MK +G  PN++TY +L+  Y K G + K   +  Q+  
Sbjct: 372 SILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  +   F+ +I  Y +AG +E    L+  M  +  +PD + +  +I  +   G T+ 
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 450 AQNLENKM 457
           A  L  +M
Sbjct: 492 AFRLHKEM 499



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 166/372 (44%), Gaps = 11/372 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K ++ ++   +F +L + +  +     F  L++   +    E+A  ++  M    + P++
Sbjct: 102 KSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKM---DVLPAM 158

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
                ++    + G  D  +    DM +     P+V TY  LI  C +   F    ++  
Sbjct: 159 QACNMVLDGLVKKGRFDTMWKVYGDMVA-RGASPNVVTYGTLIDGCCRQGDFLKAFRLFD 217

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM    I  + V Y  +I G     +  E ES F  M  SG   P+++T N+M+  Y   
Sbjct: 218 EMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGML-PNLYTYNTMMDGYCKI 276

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTV 326
            +++K  + Y E    G+  ++ T  IL     +    D+M S   F+     F   P +
Sbjct: 277 AHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFGVVPNI 333

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
             YN +I+ + KAG++ +      +++   + P+  TY  L+        + + D +L++
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           ++    + +   +N +I  Y + G++EK  E+   M E+   P+ ITF+T+I  Y   G 
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 447 TEAAQNLENKMI 458
            EAA  L  +M+
Sbjct: 454 MEAAMGLYTEMV 465



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 160/369 (43%), Gaps = 16/369 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   +Q  +  A ++F  + +++ +      +T L+  L    +  +A  +F  M + G
Sbjct: 200 IDGCCRQGDFLKAFRLFDEMIEKKIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSG 258

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  Y  ++  Y +   + +A     +M       P+V T+ ILI    K       
Sbjct: 259 MLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG-DGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K L +M+  G+  +   YN +IDGY KA    E  S  S  +E     PD+FT + +I 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE-IEKHEILPDVFTYSILIK 376

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                  +E+ +    E    G   +  T N L   Y + G  +K   V   M ++   P
Sbjct: 377 GLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++T++ +I+ + KAG +E     + +M  +G+ P+ + Y +L+  + K G   +   + 
Sbjct: 437 NIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLH 496

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT-------------MKERHCVPDN 431
           ++++ + +  +    +C+I    + G +    +LFL              +    C P++
Sbjct: 497 KEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNH 556

Query: 432 ITFATMIQA 440
           + +  +IQ 
Sbjct: 557 VMYTALIQG 565



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 152/411 (36%), Gaps = 78/411 (18%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  + E A  L+  M+  GL P V  YTAL+  + + G   EAF    +M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF-DLIEKILA------------EMSYLGIECSAVT 222
           +  +   P+V+T S LI    K  R  D I+  LA            E+       + V 
Sbjct: 500 QE-AGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVM 558

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y  +I G     +  +    FS M    G  PD+FT   +I  +  + ++  +     + 
Sbjct: 559 YTALIQGLCTDGRIFKASKFFSDM-RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI 617

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF--------------------MQKRF- 321
             MG+  +     +L K Y  +G    ++S + F                    ++ RF 
Sbjct: 618 LKMGIIPNSSVYRVLAKGYEESGY---LKSALSFCGEGVQPLDRVNSEPWGSYTIRSRFQ 674

Query: 322 ---------------------------FFPTVVTYNIVIETFGKAGHI--------EKME 346
                                      +F T++      E   K   I         K  
Sbjct: 675 LCVVTEKKECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQKGDQRPNKAL 734

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           + F++M+    +P+ +T    +SA +  G +   + I   + +  +  D    N +I+ Y
Sbjct: 735 QLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMY 794

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            + G++     LF   +++    D  T+ +MI  +   G  E A  L  +M
Sbjct: 795 SKCGEIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEM 841



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/349 (20%), Positives = 134/349 (38%), Gaps = 60/349 (17%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+  +YTAL+      G + +A    +DM+  S  +PDV+T  ++I+   +      +  
Sbjct: 554 PNHVMYTALIQGLCTDGRIFKASKFFSDMR-CSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------------------------MESS 242
           + A++  +GI  ++  Y  +  GY ++   +                         + S 
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGSYTIRSR 672

Query: 243 FSAMV--ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           F   V  E   CH      +S ++A+G    +     WY  F+ +        +      
Sbjct: 673 FQLCVVTEKKECH------SSYLTAFGIHSFVLL---WY--FHTILKPPSPHEILKKVPF 721

Query: 301 YGRAGMYDKMRSVMDF--MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            G+ G     +++  F  MQ     P +VT  + +      G ++  E     ++HRG+ 
Sbjct: 722 IGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLD 781

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            +     SL++ YSK G I     +    +  DV   T     +I  +   G  E+  +L
Sbjct: 782 TDLCLNNSLINMYSKCGEIGTARRLFDGTQKKDVTTWTS----MIVGHALHGQAEEALQL 837

Query: 419 FLTMKERH----------------CVPDNITFATMIQAYNALGMTEAAQ 451
           F  MKE +                 +P+++TF  ++ A +  G+ E  +
Sbjct: 838 FTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGK 886


>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           pusilla]
          Length = 381

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ ++ V +D   F  +I  Y
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXY 260

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG +     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLIAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 166/358 (46%), Gaps = 43/358 (12%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 85

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++  Y 
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYE 261

Query: 373 KAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ-------------AGDVEKMG-- 416
           +AGLI     +L +++  D I  DT     I++  G+             AG+V+ +   
Sbjct: 262 RAGLIAHAKRLLHELKRPDNIPRDTAIH--ILAGAGRIEEATYVFRQAIDAGEVKDITVF 319

Query: 417 -----------------ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                            E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 320 ERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 377



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                 D I F TMI  Y   G+   A+ L +++
Sbjct: 243 STGVEIDQILFQTMIVXYERAGLIAHAKRLLHEL 276



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 151/362 (41%), Gaps = 40/362 (11%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+ IF  L++   +      +  ++ + GK K   +A  L   M + G+ P+   Y+ L+
Sbjct: 24  AISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 82

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           + Y ++    EA S  ++M+ +  C  D+ T +I+I    +       +K+   M  +GI
Sbjct: 83  TMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 141

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------------------------ 246
           E + V+YNT++  YG A+ F E    F  M                              
Sbjct: 142 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 247 ----VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
               ++S G  P+  T +++IS +G  G +++    + +    GV+ D      +   Y 
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYE 261

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG+    + ++  +++    P  +  +  I     AG IE+    F++    G   +  
Sbjct: 262 RAGLIAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            +  ++   SK      V  +  ++       D+     +++AYG+  + +K  ++++ M
Sbjct: 318 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 377

Query: 423 KE 424
           +E
Sbjct: 378 QE 379



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146
           ++ KK+  AL +F  +R+ +       C     +   LG  K+ ++   LF  M   G++
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK---LFWGMRKMGIE 142

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P+V  Y  L+  YG + L  EA      M+   + + +V TY+ ++    K    +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS--------FSAMV---E 248
           ++ EM   GIE +++TY+TII  +GK  K       F+++ S+        F  M+   E
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYE 261

Query: 249 SGGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
             G              PD    ++ I     +G IE+    + +    G   DI     
Sbjct: 262 RAGLIAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +     +   Y  +  V D M+   +FP      +V+  +GK    +K  + + +M+  G
Sbjct: 322 MIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 170/391 (43%), Gaps = 52/391 (13%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM- 175
           ++ ++  L K  +   A  LF  M   G+ P +  Y +++  +  SG   +A   + +M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 176 -KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            + +S   PDV TY+ LI +  K  +F    ++  EM   GI  + +TYN++IDG+ K  
Sbjct: 318 ERKIS---PDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 374

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +  E  F  M  + GC PD+FT  ++I  Y  +  I+   +  +E    G+ A+  T 
Sbjct: 375 RLDAAEDMFYLMA-TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTY 433

Query: 295 NILTKSYGRAG------------------------------------------MYDKM-R 311
           N L   +   G                                          M+  M +
Sbjct: 434 NTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 493

Query: 312 SVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           S MD      F    P V+TYNI+I      G   + EE +++M HRG+ P++ITY S++
Sbjct: 494 SKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               K   + +   +   + +     +   FN +I+ Y +AG V+   ELF  M  R  V
Sbjct: 554 DGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            D I + T+I  +  +G    A ++  +MI+
Sbjct: 614 ADAIIYITLIYGFRKVGNINGALDIFQEMIS 644



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 3/362 (0%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q RC   +F  L+     C +   A   F  +   GL P V  +T L+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH 157

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA    + M   + C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 158 GLCVEDRVSEALDFFHQMFETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + +TY TI+DG  K        +    M E     P++   +++I +    G     + 
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            + E    G+  D+ T N +   +  +G +     ++  M +R   P VVTYN +I  F 
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFV 336

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G   +  E + +M  RG+ PN+ITY S++  + K   +   + +   +       D  
Sbjct: 337 KEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 396

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            F  +I  Y  A  ++   EL   M  R  V + +T+ T+I  +  +G   AA +L  +M
Sbjct: 397 TFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 456

Query: 458 IA 459
           I+
Sbjct: 457 IS 458



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 343 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTL 401

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM   G+  + VTYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 461

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 298
           C PDI T N+++    ++G ++   + +             + FN  GV+ D+ T NIL 
Sbjct: 462 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN--GVEPDVLTYNILI 518

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 519 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 578

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN +T+ +L++ Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 579 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 638

Query: 419 FLTMKERHCVPDNITFATMIQAY 441
           F  M      PD IT   M+  +
Sbjct: 639 FQEMISSGVYPDTITIRNMLTGF 661



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 140/335 (41%), Gaps = 38/335 (11%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++N +I  +    K     S+F  + +  G HPD+ T  +++        + +
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKL-GLHPDVVTFTTLLHGLCVEDRVSE 167

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAG-------MYDKMR------------SVMD 315
              ++++      + ++ T   L     R G       + D+M             +++D
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 316 FMQKR-----------------FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            M K+                    P VV Y+ +I++  K G     +  F +M+ +G+ 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAEL 347

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +  M  R  +P+ IT+ +MI  +      +AA+++
Sbjct: 348 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 382



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 21/321 (6%)

Query: 69  SSKKYKNLWPKPVL-------EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLM 121
           +++ Y  + P+ ++         +D   KQ +   A  +F L+  +        TFT L+
Sbjct: 344 AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGC-SPDVFTFTTLI 402

Query: 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
                 K+ +    L   M   GL  +   Y  L+  +   G L+ A      M S   C
Sbjct: 403 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 462

Query: 182 KPDVYTYSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGY 230
            PD+ T + L+   C      D +E           + A   + G+E   +TYN +I G 
Sbjct: 463 -PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 521

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
               KF E E  +  M   G   PD  T +SMI        +++  + +          +
Sbjct: 522 INEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T N L   Y +AG  D    +   M +R      + Y  +I  F K G+I    + F+
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 640

Query: 351 KMKHRGMKPNSITYCSLVSAY 371
           +M   G+ P++IT  ++++ +
Sbjct: 641 EMISSGVYPDTITIRNMLTGF 661


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 165/352 (46%), Gaps = 16/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + E+A  L + M  +G +P+  VY AL+  + ++G L+ A      M
Sbjct: 611 TYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKM 670

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P++YTYS LI S  K  R DL+ K+L++M       + V Y  +IDG  K  K
Sbjct: 671 SERGYC-PNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGK 729

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE       M E  GC+P++ T  +MI  +G  G IE+  + Y +    G   +  T  
Sbjct: 730 TEEAYRLMLKM-EEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYR 788

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFK 350
           +L       G+ D+   ++D M++ ++   + +Y  +IE F +      G ++++ E   
Sbjct: 789 VLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSE--- 845

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD--VILDTPFFNCIISAYGQ 408
                   P    Y  L+  + KAG +    ++L ++ +S    + +   +  +I +   
Sbjct: 846 ----NESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSH 901

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           A  V+K  EL+ +M  ++ VP+  TF  +I+    +G  + A  L + +  M
Sbjct: 902 ASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQM 953



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 171/357 (47%), Gaps = 16/357 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++K++  L    + E+A LLFE M  +G+ PSV  YT L+ ++ ++GL+ +A +  ++M
Sbjct: 455 TYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEM 514

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +C P+V TY+ LI +  K  +     K+   M   G + + VTY  +IDG+ KA +
Sbjct: 515 LR-DNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQ 573

Query: 236 FE-----------EMESSFSAM---VESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYN 280
            +           ++ESS   M   ++   C  P+I T  +++     +  +E+  +  +
Sbjct: 574 IDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLD 633

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
             ++ G + +    + L   + + G  +  + V   M +R + P + TY+ +I +  K  
Sbjct: 634 TMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEK 693

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            ++ + +   KM      PN + Y  ++    K G   +   ++ ++E      +   + 
Sbjct: 694 RLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYT 753

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I  +G+ G +E+  EL+  M  + C P+ IT+  +I    + G+ + A  L ++M
Sbjct: 754 AMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEM 810



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 8/324 (2%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P    Y  +VS   ++ L  EA   ++ M+S+S C P+V TY IL+  C    +    ++
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSIS-CIPNVVTYRILLSGCLGKGQLGRCKR 328

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           IL+ M   G   +   +N+++  Y K++ +      F  M++ G C P     N  I + 
Sbjct: 329 ILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCG-CQPGYLLYNIFIGSI 387

Query: 267 GN------SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +      S  +E  EK Y+E   +GV  +   ++   +    AG +DK   ++  M  +
Sbjct: 388 CSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSK 447

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            F P   TY+ VI     A  +EK    F++MK  G+ P+  TY  L+ ++ KAGLI + 
Sbjct: 448 GFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQA 507

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            +   ++   +   +   +  +I AY +A  V    +LF  M      P+ +T+  +I  
Sbjct: 508 RNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDG 567

Query: 441 YNALGMTEAAQNLENKMIAMKENS 464
           +   G  + A  +  +M    E+S
Sbjct: 568 HCKAGQIDKACQIYARMQGDIESS 591



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 3/181 (1%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N++I  +  +  ++     + E +  G + D  TL     S  +AG   +    +  +
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAG---RCGDALSLL 263

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +K  F P  V YN ++    +A   ++  +   +M+     PN +TY  L+S     G +
Sbjct: 264 EKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQL 323

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   IL  +       +   FN ++ AY ++ D     +LF  M +  C P  + +   
Sbjct: 324 GRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIF 383

Query: 438 I 438
           I
Sbjct: 384 I 384



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           LN L +   R GM++     +  ++   +  +  TYN +I+ F +A  ++      ++M 
Sbjct: 173 LNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMS 232

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           + G + +  T      +  KAG   +    L  +E  + + DT F+N ++S   +A   +
Sbjct: 233 NSGFRMDGCTLGCFAYSLCKAG---RCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQ 289

Query: 414 KMGELFLTMKERHCVPDNITFATMIQA 440
           +  ++   M+   C+P+ +T+  ++  
Sbjct: 290 EAMDILDRMRSISCIPNVVTYRILLSG 316


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 168/356 (47%), Gaps = 25/356 (7%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q +      T+T L+ M GK  +  +   L E M+S+G   ++  Y  ++ A G++ ++
Sbjct: 245 KQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMV 304

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCT---KFHRFDLIEKILAEMSYLGIECSAV- 221
           DEA   ++ M   SDC+P+ +TYSI++   +   + HR + I  I          CS   
Sbjct: 305 DEAIFMLSKMIE-SDCRPNQFTYSIMLDVLSTGGQLHRLNEILDI----------CSGCL 353

Query: 222 ---TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
               Y+ +I    K+    E  S F  M  S     D +   SM+ A  N+   EK  + 
Sbjct: 354 NRPVYSYLIKALCKSGHASEAHSVFCRMWNSHE-KGDRYAFVSMLEALCNA---EKTTEA 409

Query: 279 YNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            +  ++M   G+  D+   N++  + G+      M S+ D M+     P V TYNI+I +
Sbjct: 410 IDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISS 469

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           FG+ G ++K  E F++M+    KP+ +TY S+++   K G + +   + + ++      D
Sbjct: 470 FGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPD 529

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              ++ +I  +G++  V+    LF  M  + C+P+ +T+  ++      G T  A 
Sbjct: 530 VFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAH 585



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 161/359 (44%), Gaps = 40/359 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M   G K  +  Y  L++A  ++G++D+A+    DMK  + C PD YTY+ILI+  
Sbjct: 205 VYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQ-NYCDPDAYTYTILIRMS 263

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  +      +L EM   G   + + YNT+I+  GK K  +E     S M+ES  C P+
Sbjct: 264 GKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIES-DCRPN 322

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-- 313
            FT + M+      G + ++ +     ++     +    + L K+  ++G   +  SV  
Sbjct: 323 QFTYSIMLDVLSTGGQLHRLNEI---LDICSGCLNRPVYSYLIKALCKSGHASEAHSVFC 379

Query: 314 ---------------------------------MDFMQKRFFFPTVVTYNIVIETFGKAG 340
                                            +  M ++     V  YN++    GK  
Sbjct: 380 RMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLK 439

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +  M   +  M+  G+ P+  TY  ++S++ + GL+ K   +  ++E+     D   +N
Sbjct: 440 QVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYN 499

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      + A +L ++M+A
Sbjct: 500 SMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVA 558



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 39/265 (14%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF-STINDM 175
           F  ++  L   ++  +A  L  +M   G+   V +Y  + SA G+  L   +F S++ D 
Sbjct: 393 FVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGK--LKQVSFMSSLYDT 450

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PDV+TY+I+I S   F R  L++K                          ++ 
Sbjct: 451 MRANGVVPDVFTYNIMISS---FGRVGLVDK-------------------------ASEL 482

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FEEME         G C PD+ T NSMI+  G +G++++    + +    G   D+ T +
Sbjct: 483 FEEMED--------GSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYS 534

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL + +G++   D   S+ D M  +   P +VTYNI+++   + G   +  ++++ +K +
Sbjct: 535 ILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQ 594

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKV 380
           G+ P+SITY  L    S++   +++
Sbjct: 595 GLTPDSITYSILERLESRSQRTVRI 619



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 12/241 (4%)

Query: 208 LAEMSYLGIECSAVTYNTIIDGY--GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            A  S  G    A +YN I+      +A   E M     A +E  G   +I T+N ++  
Sbjct: 106 FAATSLPGFRHDAFSYNRILVLLFSNRADPAEAMR--LIAEMERDGVPGNISTVNLLVGM 163

Query: 266 YGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               G  ++   KW       G++ +  T   L +++ R+    K   V + M+++ +  
Sbjct: 164 GVEVGRCLDLASKW-------GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKL 216

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  YN+++    KAG +++  + F+ MK     P++ TY  L+    KAG   K  S+L
Sbjct: 217 DIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLL 276

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++ +   +L+   +N +I A G+   V++   +   M E  C P+  T++ M+   +  
Sbjct: 277 EEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTG 336

Query: 445 G 445
           G
Sbjct: 337 G 337



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 111/280 (39%), Gaps = 46/280 (16%)

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +++AEM   G+  +  T N ++    +  +  ++ S +       G   + +T   ++ A
Sbjct: 140 RLIAEMERDGVPGNISTVNLLVGMGVEVGRCLDLASKW-------GLRLNGYTYKCLVQA 192

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +  S  + K  + Y +    G K DI   N+L  +  +AGM D+   V + M++ +  P 
Sbjct: 193 HLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPD 252

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----------------------------- 356
             TY I+I   GKAG   K     ++M   G                             
Sbjct: 253 AYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLS 312

Query: 357 ------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
                  +PN  TY  ++   S  G + +++ IL         L+ P ++ +I A  ++G
Sbjct: 313 KMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGC---LNRPVYSYLIKALCKSG 369

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 449
              +   +F  M   H   D   F +M++A  NA   TEA
Sbjct: 370 HASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEA 409



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 8/217 (3%)

Query: 243 FSAMVESGGCHPDIFTLNS-MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
           F+A    G  H D F+ N  ++  + N  +  +  +   E    GV  +I T+N+L    
Sbjct: 106 FAATSLPGFRH-DAFSYNRILVLLFSNRADPAEAMRLIAEMERDGVPGNISTVNLLV--- 161

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              GM  ++   +D   K        TY  +++   ++  + K  E ++KM+ +G K + 
Sbjct: 162 ---GMGVEVGRCLDLASKWGLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDI 218

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
             Y  L++A +KAG++ +   +   ++ +    D   +  +I   G+AG   K   L   
Sbjct: 219 FAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEE 278

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           M    CV + I + T+I+A     M + A  + +KMI
Sbjct: 279 MVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMI 315



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 54/104 (51%)

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++ N  TY  LV A+ ++  + K   +  ++      LD   +N +++A  +AG V++ 
Sbjct: 178 GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQA 237

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            ++F  MK+ +C PD  T+  +I+     G T    +L  +M++
Sbjct: 238 YQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVS 281



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++ Y     T++ L+   GK  + + A  LF+ M++ G  P++  Y  L+    + G  
Sbjct: 522 QEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKT 581

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
            EA      +K      PD  TYSIL +  ++  R   I K
Sbjct: 582 TEAHKFYETLKQ-QGLTPDSITYSILERLESRSQRTVRIRK 621


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 162/335 (48%), Gaps = 3/335 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++++L K  +  +A  +   M+S+G+ P   +YT L+  + + G +  A+   ++M
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PD  TY+ +I    +  R    +K+  EM    +E   VTY  +IDGY K  K
Sbjct: 285 QK-RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 343

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  S  + M++ G   P+I T  ++       G ++   +  +E    G++ +I T N
Sbjct: 344 MKEAFSLHNQMLQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYN 402

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +AG  D+   +M  M+   F P  VTY  +++ + K+  + +  E  ++M  R
Sbjct: 403 SLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDR 462

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P  +T+  L++ +  +G++   + +L+ +    ++ +   +N +I  Y    ++   
Sbjct: 463 ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 522

Query: 416 GELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 449
            E++  M  +  VPD  T+  +I+ +  A  M EA
Sbjct: 523 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 557



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L +  +  +A  LF  M+   L+P    YTAL+  Y + G + EAFS  N M
Sbjct: 295 TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM 354

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +    P++ TY+ L     K    D   ++L EM   G+E +  TYN++++G  KA  
Sbjct: 355 LQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 413

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       M E  G HPD  T  +++ AY  S  + +  +   +     ++  + T N
Sbjct: 414 IDQAVKLMKDM-EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFN 472

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L   +  +GM +    ++ +M ++   P   TYN +I+ +    ++    E ++ M  +
Sbjct: 473 VLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAK 532

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+  TY  L+  + KA  + +   + R +      L    +N +I  + +     + 
Sbjct: 533 GVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEA 592

Query: 416 GELFLTMKERHCVPD 430
            ELF  M+    V D
Sbjct: 593 RELFEQMRREGLVAD 607



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 154/339 (45%), Gaps = 6/339 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L E M   GLKP+   Y  ++    ++G + EA   + +M S     PD   Y+ LI   
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS-EGIAPDGVIYTTLIDGF 268

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K        ++  EM    I    +TY  +I G  +  +  E +  F  MV      PD
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV-CKRLEPD 327

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T  ++I  Y   G +++    +N+   MG+  +I T   L     + G  D    ++ 
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M ++     + TYN ++    KAG+I++  +  K M+  G  P+++TY +L+ AY K+ 
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +++   +LRQ+ + ++      FN +++ +  +G +E   +L   M E+  +P+  T+ 
Sbjct: 448 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 507

Query: 436 TMIQAY----NALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           ++I+ Y    N    TE  + +  K +    N+   LI+
Sbjct: 508 SLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIK 546


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 163/381 (42%), Gaps = 59/381 (15%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A  +   M+S G  P    Y+ ++     +  +D AF    +MKS +   PDV+TY+I
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTI 520

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI S  K        K   EM   G   + VTY  +I  Y KA+K       F  M+ S 
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML-SE 579

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----------- 299
           GC P++ T  ++I  +  SG IEK  + Y     M   ADI  +++  K           
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYAR---MRGNADIPDVDMYFKIDDGNIRDPNI 636

Query: 300 -SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            +YG       +A    + R ++D M      P  + Y+ +I+ F K G +++ +  F K
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696

Query: 352 MKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPF--------- 398
           M  RG  PN  TY SL+   +    L + +  + R +ENS   +VI+ T           
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 399 ----------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                                 +  +I  +G+AG V+K  EL   M  + C P+ +T+  
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 437 MIQAYNALGMTEAAQNLENKM 457
           +I    A G+ + A  L ++M
Sbjct: 817 LINHCCAAGLLDDAHQLLDEM 837



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 16/352 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  L +VM  +G +P+  VY AL+  + + G LDEA      M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S     P+VYTYS LI    K  R DL  K+L+ M       + + Y  +IDG  K  K
Sbjct: 698 -SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     S M+E  GCHP++ T  +MI  +G +G ++K  +   +    G   +  T  
Sbjct: 757 TDEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYR 815

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFK 350
           +L      AG+ D    ++D M++ ++   +  Y  VIE F +      G ++++ E   
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFNCIISAYGQ 408
                   P    Y  L+ ++ KAG +     + +++ +  S    D   ++ +I +   
Sbjct: 876 V-------PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSL 928

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           A  V+K  EL+  M +R  +P+   F  +++    +   E A  L + +  M
Sbjct: 929 ASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQM 980



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LG+CK+      +  +M+++G  PS  ++ +L+ AY +SG    A+  +  M     C+P
Sbjct: 350 LGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQP 402

Query: 184 DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
               Y+ILI       +       +L EK   EM    +  + V  + +      A KFE
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +  S    M+ S G  PD  T + +I    N+  ++     + E     V  D+ T  IL
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             S+ + G+  + R   D M +    P VVTY  +I  + KA  +    E F+ M   G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDV-------------ILDTPFF--NC 401
            PN +TY +L+  + K+G I K   I  R   N+D+             I D   F    
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++    +A  V++  +L   M    C P++I +  +I  +  +G  + AQ +  KM
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 12/315 (3%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +YT ++S   ++ L +EA   ++ M+S S C P+V TY IL+  C +  +    ++IL+ 
Sbjct: 301 IYTQMISGLCEASLFEEAMDFLSRMRS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G   S   +N++I  Y ++  +         M + G C P     N +I   G  G
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQPGYVVYNILIG--GICG 416

Query: 271 N--------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           N        +E  EK Y E     V  +   ++ L +    AG ++K  S++  M  + F
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P   TY+ VI     A  ++     F++MK   + P+  TY  L+ ++ K GL+ +   
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARK 536

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++       +   +  +I AY +A  +    ELF  M    C+P+ +T+  +I  + 
Sbjct: 537 WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 443 ALGMTEAAQNLENKM 457
             G  E A  +  +M
Sbjct: 597 KSGQIEKACQIYARM 611



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 170/387 (43%), Gaps = 66/387 (17%)

Query: 102 GLLRQ-QQWYQARCQ--------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GLL+Q ++W+    +        T+T L+    K ++   A+ LFE+MLS+G  P+V  Y
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDC---------------KPDVYTYSILIKSCTK 197
           TAL+  + +SG +++A      M+  +D                 P+++TY  L+    K
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+      +L  MS  G E + + Y+ +IDG+ K  K +E +  F+ M E G   P+++
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY-GPNVY 707

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T +S+I            ++ + +  L                       D    V+  M
Sbjct: 708 TYSSLI------------DRLFKDKRL-----------------------DLALKVLSRM 732

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +    P V+ Y  +I+   K G  ++       M+ +G  PN +TY +++  + KAG +
Sbjct: 733 LENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            K   ++RQ+       +   +  +I+    AG ++   +L   MK+ +       +  +
Sbjct: 793 DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 438 IQAYN-----ALG-MTEAAQNLENKMI 458
           I+ +N     +LG + E A+N+   +I
Sbjct: 853 IEGFNREFIISLGLLDEIAENVAVPII 879



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           ++++   G  GN    E++  E      +   + LN+L +   R G+++     +  ++ 
Sbjct: 166 HALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKD 225

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P+ +TYN ++  F +A  ++      ++M   G   +  T    V    KAG   +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---R 282

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               L  +E  +  LDT  +  +IS   +A   E+  +    M+   C+P+ +T+  ++
Sbjct: 283 WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 39/250 (15%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           ++LI+ C +   +++  + L  +  LG + S +TYN ++  + +A + +        M +
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           SG                               FN+ G      TL        +AG   
Sbjct: 261 SG-------------------------------FNMDG-----YTLGCFVHLLCKAG--- 281

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           + R  +  ++K  F    V Y  +I    +A   E+  ++  +M+     PN +TY  L+
Sbjct: 282 RWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               +   + +   IL  +           FN +I AY ++GD     +L   M +  C 
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 429 PDNITFATMI 438
           P  + +  +I
Sbjct: 402 PGYVVYNILI 411


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 11/351 (3%)

Query: 114 CQTFTKLMV-MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---- 168
           C  F  ++  +L + ++ E    +   M++ G++P+  + TA +    + G   EA    
Sbjct: 396 CGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIW 455

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
           F T+N    V     ++ T + LI    +        K++  M   GIE  ++TYN +I 
Sbjct: 456 FKTLNKGLGV-----NLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIR 510

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G  K  K EE       M   G   PD+FT N+++ AY N G +E+     ++    G++
Sbjct: 511 GCCKDSKMEEAIKLHGDMTRRG-FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQ 569

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            DI +   +   + +A    K +  +  +  R   P V  YN +I  +G+ G I    + 
Sbjct: 570 PDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDA 629

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + MK  G++P ++TY SL+     AGL+ +  +I  Q   ++V L    +  +I  Y +
Sbjct: 630 VETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCK 689

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            G + +    F  M+ R   P+ +T+ T++ AY+  G +E A  L ++M+ 
Sbjct: 690 LGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVG 740



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 148/299 (49%), Gaps = 2/299 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   L+  L + K  ++A+ + + ML+ G++     Y  ++    +   ++EA     DM
Sbjct: 469 TSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM 528

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +    KPD++T++ L+ +     + +    +L +M   G++   V+Y TIIDG+ KAK 
Sbjct: 529 -TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKD 587

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +   + +++ G   P++F  N++I  YG +G+I             G++    T  
Sbjct: 588 IRKAKEYLTELMDRG-LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYG 646

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L      AG+ ++ +++    ++      V+ Y I+I+ + K G + +   YF++M+ R
Sbjct: 647 SLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSR 706

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           G+ PN +TY +L+ AYSK+G   +   +  ++  S VI D   +  +I+   +   ++K
Sbjct: 707 GISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDK 765



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 158/404 (39%), Gaps = 77/404 (19%)

Query: 130 PEQASLL-----FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           P Q SL      F V+ S G  PS+    A + A  ++G LD A    ++M+   +   +
Sbjct: 161 PAQGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALN 220

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
            Y+Y+ +IK+  K  + D   ++LAE+   G++ + VTYN ++D   K+ + EE      
Sbjct: 221 EYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEE-AFRLK 279

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             +E GG  P + T   +I+         ++     E   +GV  +    N L   + R 
Sbjct: 280 GRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRK 339

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK-------------- 350
           G   +   + D M  +   PT VTYN++ +   K G +E+ E   +              
Sbjct: 340 GHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLF 399

Query: 351 ----------------------KMKHRGMKPNS--ITYC--------------------- 365
                                 +M  RGM+PN   +T C                     
Sbjct: 400 NTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTL 459

Query: 366 ------------SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
                       +L+    +   + +   +++ + N  + LD+  +N +I    +   +E
Sbjct: 460 NKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME 519

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +L   M  R   PD  TF T++ AY  LG  E   +L ++M
Sbjct: 520 EAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-LMGVKADIQTLNILTKSYGRA 304
           ++ S G  P I T N+ + A   +G ++   + ++E      V  +  +   + K+  +A
Sbjct: 175 VLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKA 234

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G  D    ++  + +    PTVVTYN++++   K+G +E+      +M+  GM P+ +T+
Sbjct: 235 GKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTF 294

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             L++  ++     +V  +L+++E   V  +   +N +I  + + G   +   LF  M  
Sbjct: 295 GILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVL 354

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +   P  +T+  + +A    G  E A+ +   M+++
Sbjct: 355 KKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSI 390



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 116/264 (43%), Gaps = 19/264 (7%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +S  G   S  T N  ++   +A + +     F  M ES     + ++  +MI A   +G
Sbjct: 176 LSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAG 235

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            ++   +   E    G++  + T N+L  +  ++G  ++   +   M++    P+VVT+ 
Sbjct: 236 KVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFG 295

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-----LIMKVDSILR 385
           I+I    +     ++    ++M+  G+ PN + Y  L+  + + G     L +  + +L+
Sbjct: 296 ILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLK 355

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM----KERHCVPDNITFATMIQAY 441
           +++ + V      +N I  A  + G++E+   +   M       HC   N   A ++Q  
Sbjct: 356 KMKPTAVT-----YNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRT 410

Query: 442 NALGMTEAAQNLENKMI--AMKEN 463
             L   E+  ++ N+M+   M+ N
Sbjct: 411 RRL---ESVVSITNEMVTRGMRPN 431



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVT 328
           G++ +    +   +  G    I+T N   ++  RAG  D  R V D M++ R       +
Sbjct: 164 GSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYS 223

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I+   KAG ++   E   ++   G++P  +TY  L+ A  K+G + +   +  ++E
Sbjct: 224 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 283

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
              +      F  +I+   +     ++G +   M++    P+ + +  +I  +   G   
Sbjct: 284 QGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCS 343

Query: 449 AAQNLENKMIAMK 461
            A  L ++M+  K
Sbjct: 344 QALRLFDEMVLKK 356



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  +A   FE M S G+ P+   YT L+ AY +SG  +EA    ++M   S   
Sbjct: 686 GYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVG-SGVI 744

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           PD  TY  LI  C++ +  D      AE+S   +      YN + +G
Sbjct: 745 PDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNILSNG 791


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 169/380 (44%), Gaps = 66/380 (17%)

Query: 118 TKLMVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T +++M G CK+      L  F+ ML  G+ P V +YT L+S+    G +++A   +  M
Sbjct: 216 TYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSM 275

Query: 176 KSVSDCKPDVYTYSILIKSCTK-------FHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
           K  + C PD  TY++ +    K       FHRF+L++         G     + Y+ +ID
Sbjct: 276 KE-NGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDG-------GFTLGLIGYSCLID 327

Query: 229 GYGKAKKFEEMESSFSAMV-------------------ESG---------------GCHP 254
           G  +A +F+E  S ++ M+                   E+G               G  P
Sbjct: 328 GLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVP 387

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D F  N+++ A  + GNI++ +   +E     V  D  T NI+     + G+ DK   V 
Sbjct: 388 DTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVF 447

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS-------- 366
           D M +    PTV+TYN +I+   +AG +E+    F KM+  G  P+     +        
Sbjct: 448 DEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEM-GNNPSLFLRLTLGANQVRD 506

Query: 367 ------LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
                 LV    ++G ++K   +LR +  S V+ D   +N +I+   +A +++    LF 
Sbjct: 507 TESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFK 566

Query: 421 TMKERHCVPDNITFATMIQA 440
            ++ +   PD IT+ T+I  
Sbjct: 567 ELQLKGISPDEITYGTLIDG 586



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 152/346 (43%), Gaps = 10/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  L++      + ++A   F  M     +P+  VY A+       G++  A +  N M
Sbjct: 146 AFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRM 205

Query: 176 KSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            S S C P+  TY +L+   C +    D + K+  EM   GI      Y  ++       
Sbjct: 206 VS-SGCLPNSTTYIVLMDGLCKRGMAVDAL-KMFDEMLERGIVPDVKIYTVLLSSLCNEG 263

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADI 291
           + E+      +M E+G C PD  T    +S    +G +++    ++ F L+   G    +
Sbjct: 264 RIEDAGRLLCSMKENG-CPPDEVTYTVFLSGLCKAGRVDEA---FHRFELLQDGGFTLGL 319

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
              + L     +AG +D+  S    M  +   P +  Y I+I  F +AG  +       +
Sbjct: 320 IGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDE 379

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           MK +G  P++  Y +L+ A    G I +  S++ ++  ++V+LD+   N +I    + G 
Sbjct: 380 MKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGL 439

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++K  ++F  M E  C P  +T+  +I      GM E A+ L +KM
Sbjct: 440 IDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKM 485



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           ML   + P + +YT L+  + ++G   +AF  +++MK      PD + Y+ L+K+     
Sbjct: 345 MLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKD-KGFVPDTFCYNTLLKALFDVG 403

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             D  + +++EM    +   + T+N +I G  K    ++    F  M E G CHP + T 
Sbjct: 404 NIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHG-CHPTVMTY 462

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNL-----------MGVKA--DIQTLNILTKSYGRAGM 306
           N++I     +G +E+    +++  +           +G     D ++L  L     ++G 
Sbjct: 463 NALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQ 522

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             K   ++  + +    P VVTYN +I    KA +++     FK+++ +G+ P+ ITY +
Sbjct: 523 VLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGT 582

Query: 367 LVSAYSKA 374
           L+    +A
Sbjct: 583 LIDGLWRA 590



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 127/315 (40%), Gaps = 37/315 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL      + ALV A+  +G   EA    + M    DC+P  + Y+ + +         L
Sbjct: 139 GLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDF-DCRPTAFVYNAVFQVLVDRGVILL 197

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +   M   G   ++ TY  ++DG  K     +    F  M+E G   PD+     ++
Sbjct: 198 ALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERG-IVPDVKIYTVLL 256

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S+  N G IE   +        G   D  T  +      +AG  D+     + +Q   F 
Sbjct: 257 SSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFT 316

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             ++ Y+ +I+   +AG  ++   Y+ +M  + + P+   Y  L+  +++AG        
Sbjct: 317 LGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAG-------- 368

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
             + +++ ++LD                          MK++  VPD   + T+++A   
Sbjct: 369 --RTKDAFLLLDE-------------------------MKDKGFVPDTFCYNTLLKALFD 401

Query: 444 LGMTEAAQNLENKMI 458
           +G  + AQ+L ++M+
Sbjct: 402 VGNIDRAQSLMSEML 416



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 56/216 (25%)

Query: 118 TKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA------- 168
           T  +++ G CK+   ++A  +F+ M   G  P+V  Y AL+    ++G+L+EA       
Sbjct: 426 THNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKM 485

Query: 169 ---------------FSTINDMKSV-------------------------SDCKPDVYTY 188
                           + + D +S+                         S   PDV TY
Sbjct: 486 EMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTY 545

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + LI    K    D   ++  E+   GI    +TY T+IDG  +A +  +    F  ++ 
Sbjct: 546 NTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILR 605

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           SGG  P +   N+M+ +      + +M+K     NL
Sbjct: 606 SGG-FPSLPIYNTMMRS------LCRMKKLSQAINL 634


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 143/309 (46%), Gaps = 2/309 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           QA  L + M   G KP V  Y  L++   + G LDEA   +N+M S   CKP+V T++I+
Sbjct: 261 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG-CKPNVITHNII 319

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           ++S     R+   E++L++M   G   S VT+N +I+   + +           M + G 
Sbjct: 320 LRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG- 378

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+  + N ++  +     +++  ++       G   DI T N L  +  + G  D   
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAV 438

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ +  +   P ++TYN VI+   K G  E   E  ++M+ +G+KP+ ITY +L+   
Sbjct: 439 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G + +   I   +E   +      +N I+    +A    +  +    M E+ C P  
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTE 558

Query: 432 ITFATMIQA 440
            T+  +I+ 
Sbjct: 559 ATYTILIEG 567



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 162/353 (45%), Gaps = 26/353 (7%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C +  +     GK K+   A+ + E++ + G  P V  Y  L+  Y +SG +D+A   + 
Sbjct: 144 CTSLIRGFCRSGKTKK---ATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLE 200

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIID--- 228
            M SV+   PDV TY+ +++S     +     ++L     L  EC    +TY  +I+   
Sbjct: 201 RM-SVA---PDVVTYNTILRSLCDSGKLKEAMEVLDRQ--LQRECYPDVITYTILIEATC 254

Query: 229 ---GYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
              G G+A K  +EM           GC PD+ T N +I+     G +++  K+ N    
Sbjct: 255 NDSGVGQAMKLLDEMRKK--------GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS 306

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G K ++ T NI+ +S    G +     ++  M ++   P+VVT+NI+I    +   + +
Sbjct: 307 YGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGR 366

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             +  +KM   G  PNS++Y  L+  + +   + +    L  + +     D   +N +++
Sbjct: 367 AIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 426

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           A  + G V+   E+   +  + C P  IT+ T+I     +G TE A  L  +M
Sbjct: 427 ALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEM 479



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 137/328 (41%), Gaps = 32/328 (9%)

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L+E    +  M    D  PDV   + LI+   +  +     +I+  +   G     
Sbjct: 118 RNGELEEGLKFLERMIYQGDI-PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDV 176

Query: 221 VTYNTIIDGYGKA----KKFEEME------------SSFSAMVESGG------------- 251
           +TYN +I GY K+    K  E +E            +   ++ +SG              
Sbjct: 177 ITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQ 236

Query: 252 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
             C+PD+ T   +I A  N   + +  K  +E    G K D+ T N+L     + G  D+
Sbjct: 237 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 296

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++ M      P V+T+NI++ +    G     E     M  +G  P+ +T+  L++
Sbjct: 297 AIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILIN 356

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              +  L+ +   +L ++     + ++  +N ++  + Q   +++  E    M  R C P
Sbjct: 357 FLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 416

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T+ T++ A    G  +AA  + N++
Sbjct: 417 DIVTYNTLLTALCKDGKVDAAVEILNQL 444



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 27/267 (10%)

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS--FSAMVESG---------------G 251
            +++ +G+E S +       G   ++ FEE  S+     +V +G               G
Sbjct: 84  GDLNVIGMESSPI-------GVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQG 136

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD+    S+I  +  SG  +K  +        G   D+ T N+L   Y ++G  DK  
Sbjct: 137 DIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKAL 196

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V++ M      P VVTYN ++ +   +G +++  E   +   R   P+ ITY  L+ A 
Sbjct: 197 EVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEAT 253

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
                + +   +L ++       D   +N +I+   + G +++  +    M    C P+ 
Sbjct: 254 CNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNV 313

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           IT   ++++  + G    A+ L + M+
Sbjct: 314 ITHNIILRSMCSTGRWMDAERLLSDML 340



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 4/174 (2%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           + + AI+ +E  VS   Y ++     L  L    K  K   A++I   L  +        
Sbjct: 398 KMDRAIEYLEIMVSRGCYPDIVTYNTL--LTALCKDGKVDAAVEILNQLSSKGCSPVLI- 454

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  + E A  L E M   GLKP +  Y+ L+   G+ G +DEA    +DM
Sbjct: 455 TYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM 514

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           + +S  KP   TY+ ++    K  +       LA M   G + +  TY  +I+G
Sbjct: 515 EGLS-IKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 153/338 (45%), Gaps = 3/338 (0%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           ++K + A+K+   + Q   Y     T+T ++  L K K  EQA  + + M  +G +P++ 
Sbjct: 336 KEKMEDAMKLLDDMIQNN-YAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIY 394

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y AL+         +EA   +  M+      P++YTY+IL     K  R D  +++  E
Sbjct: 395 TYNALIQGLCAVRRPEEALELVTLMEQ-GGVPPNIYTYTILTHGLCKLRRLDRAKEMFNE 453

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
               G++ + VTYNT+++GY +  +  E       M ++  C PD  T  ++I       
Sbjct: 454 ALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQND-CTPDHVTYTTLIQGLVQGN 512

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +    + ++E    G   +  TLNIL +   R G +         M+ R F  +   Y 
Sbjct: 513 QLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYY 572

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           + I     AG +E+ +    +M ++G  PN  TY +++  + + G +   D++L  +  +
Sbjct: 573 LAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIEN 632

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
            +  DT  +N +I  +   G  +   +L+ T  ER  V
Sbjct: 633 GIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVV 670



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 163/369 (44%), Gaps = 42/369 (11%)

Query: 74  KNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA 133
           ++L P  V++ L+    Q   Q AL+ F    +Q+ Y      +  ++ +LG+ K   + 
Sbjct: 179 QDLNPDAVVKVLN---LQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTEL 235

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY--TYSIL 191
             L + M + G + +  +  + V +YG+SG   E+    N MK +   +P +    Y+ +
Sbjct: 236 QSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMG-YEPGLIDTAYNSV 294

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           + S  K  + D+ E + A+M   G+ C+ +TY ++I  +   +K E+       M+++  
Sbjct: 295 LVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNY 354

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD+ T   +ISA      IE+      +    G + +I T N L +        ++  
Sbjct: 355 A-PDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEAL 413

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M++    P + TY I+     K   +++ +E F +   RG+KPN +TY +L++ Y
Sbjct: 414 ELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGY 473

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            +   +++   IL+++  +D                                   C PD+
Sbjct: 474 CRGSRLIEAMDILKEMHQND-----------------------------------CTPDH 498

Query: 432 ITFATMIQA 440
           +T+ T+IQ 
Sbjct: 499 VTYTTLIQG 507



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 164/370 (44%), Gaps = 3/370 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQT-FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +  +++ +L+ F L+++  +      T +  ++V L K K+ + A  LF  M+++G+  +
Sbjct: 263 RSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCN 322

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
              YT+++  +     +++A   ++DM   ++  PDV TY+I+I +  K    +    +L
Sbjct: 323 NLTYTSMIQCFFLKEKMEDAMKLLDDMIQ-NNYAPDVVTYTIVISALCKRKMIEQAYGVL 381

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M   G E +  TYN +I G    ++ EE       ++E GG  P+I+T   +      
Sbjct: 382 QKMRENGCEPNIYTYNALIQGLCAVRRPEE-ALELVTLMEQGGVPPNIYTYTILTHGLCK 440

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              +++ ++ +NE    G+K +  T N L   Y R     +   ++  M +    P  VT
Sbjct: 441 LRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVT 500

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y  +I+   +   +        +M+++G   N  T   L    ++ G         R+++
Sbjct: 501 YTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMK 560

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +         +   I     AG++E+   L   M  +   P+  T+ TMI+ +   G  +
Sbjct: 561 DRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLD 620

Query: 449 AAQNLENKMI 458
            A  + N MI
Sbjct: 621 DADAMLNFMI 630



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 7/271 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++ + AL++  L+ +Q        T+T L   L K ++ ++A  +F   L+ GLKP+   
Sbjct: 407 RRPEEALELVTLM-EQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVT 465

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L++ Y +   L EA   + +M   +DC PD  TY+ LI+   + ++     ++  EM
Sbjct: 466 YNTLLNGYCRGSRLIEAMDILKEMHQ-NDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEM 524

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP--DIFTLNSMISAYGNS 269
              G + +  T N +  G  +    ++    +  M + G  +   D +     I     +
Sbjct: 525 ENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYL---AIHCLSTA 581

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +E+ +    E    G   ++ T N + K + R G  D   ++++FM +    P   +Y
Sbjct: 582 GEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSY 641

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           NI+I+ F   G  +  ++ +     RG+  N
Sbjct: 642 NILIKEFHNQGRTQDADQLYATALERGVVLN 672



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 5/248 (2%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G + +   Y T+ID  G+AK F E++S    M ++ G       L+S + +YG SG  ++
Sbjct: 211 GYDHNTDAYFTMIDILGRAKMFTELQSLLQKM-QTQGREITRSMLHSFVMSYGRSGRFKE 269

Query: 275 MEKWYNEFNLMGVKADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
             + +N    MG +  +     N +  S  +    D   ++   M         +TY  +
Sbjct: 270 SLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSM 329

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I+ F     +E   +    M      P+ +TY  ++SA  K  +I +   +L+++  +  
Sbjct: 330 IQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGC 389

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQ 451
             +   +N +I         E+  EL +T+ E+  VP NI T+  +      L   + A+
Sbjct: 390 EPNIYTYNALIQGLCAVRRPEEALEL-VTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAK 448

Query: 452 NLENKMIA 459
            + N+ +A
Sbjct: 449 EMFNEALA 456


>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           diamantinensis]
          Length = 363

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 4   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 62

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  Y + KKF E    FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 63  LTMYVENKKFLEALXVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 121

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 122 IEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 181

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M+ RG++PNSITY +++S + K G + +   + +++ ++ V +D   F  +I AY
Sbjct: 182 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAY 241

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +AG +     L   +K     PDNI   T I      G  E A
Sbjct: 242 ERAGLIAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 281



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 167/358 (46%), Gaps = 43/358 (12%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 8   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 66

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 67  VENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 125

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 312
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 126 VVSYNTLLRVYGDA---ELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 182

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 183 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYE 242

Query: 373 KAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ-------------AGDVEKMG-- 416
           +AGLI     +L +++  D I  DT     I++  G+             AG+V+ +   
Sbjct: 243 RAGLIAHAKRLLHELKRPDNIPRDTAIH--ILAGAGRIEEATYVFRQAIDAGEVKDITVF 300

Query: 417 -----------------ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                            E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 301 ERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 358



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 2   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 61

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ Y +    ++   +  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 62  LLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 121

Query: 427 CVPDNITFATMIQAY 441
             P+ +++ T+++ Y
Sbjct: 122 IEPNVVSYNTLLRVY 136


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 5/326 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTI 172
           ++T L+  L   K+ E+A  L  +M  D  +   P+V  Y+ +++ +   G +D+ ++  
Sbjct: 163 SYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLF 222

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            +M       PDV TY+ +I    K   FD  E +  +M   G + +  TYN +I GY  
Sbjct: 223 LEMID-RGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             K++E+      M  + G  PD +T  S+++    +G   +   +++     G+K  + 
Sbjct: 282 IGKWKEVVQMLEEM-SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVS 340

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T  IL   Y   G   +M S +D M +    P    +NI    + K G I+K  + F KM
Sbjct: 341 TYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKM 400

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G+ PN + Y +L+ A  K G +   +    Q+ N  V  +   FN ++         
Sbjct: 401 RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKW 460

Query: 413 EKMGELFLTMKERHCVPDNITFATMI 438
           E+  EL   M ++   P+ + F T+I
Sbjct: 461 ERAEELVYEMLDQGICPNAVFFNTLI 486



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 146/325 (44%), Gaps = 2/325 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M+  G+ P V  YT ++    ++ L D A      M   +  KP+ YTY+ LI   
Sbjct: 221 LFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMID-NGFKPNNYTYNCLIHGY 279

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
               ++  + ++L EMS  G++    TY ++++   K  +  E    F +M+  G   P 
Sbjct: 280 LSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKG-IKPK 338

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T   +I  Y   G + +M  + +     G+  D    NI   +Y + GM DK   + +
Sbjct: 339 VSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFN 398

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M++    P VV Y  +I+   K G ++  E  F +M + G+ PN + + SLV       
Sbjct: 399 KMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVD 458

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
              + + ++ ++ +  +  +  FFN +I      G V +   L   M+     PD  ++ 
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYT 518

Query: 436 TMIQAYNALGMTEAAQNLENKMIAM 460
            +I  Y   G T+ A+ + + M+++
Sbjct: 519 PLISGYCLTGRTDEAEKVFDGMVSI 543



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L K +  ++A  +F+ M+ +G KP+   Y  L+  Y   G   E    + +M
Sbjct: 236 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEM 295

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KPD YTY  L+    K  R          M   GI+    TY  +I GY     
Sbjct: 296 -SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGA 354

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             EM S    MVE+G   PD    N   SAY   G I+K    +N+    G+  ++    
Sbjct: 355 LSEMHSFLDLMVENG-LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYG 413

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  + G  D      + M      P +V +N ++         E+ EE   +M  +
Sbjct: 414 ALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ 473

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN++ + +L+      G +M+   ++  +E+  V  D   +  +IS Y   G  ++ 
Sbjct: 474 GICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEA 533

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ++F  M      P  +T+ T++  Y +    + A  L  +M+
Sbjct: 534 EKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREML 576



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 152/355 (42%), Gaps = 2/355 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  L+  L    + E+A  L   ML  G+ P+   +  L+      G + E    I+ M
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 505

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V   +PD ++Y+ LI       R D  EK+   M  +G+  + VTYNT++ GY  A +
Sbjct: 506 EHVG-VRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR 564

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++    F  M+  G   P + T N+++     +    + ++ Y      G K DI T N
Sbjct: 565 IDDAYCLFREMLRKG-VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     ++   D+   +   +  +     ++T+ I+I    K G  E   + F  +   
Sbjct: 624 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN 683

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN +TY  +     + G + + DS+   +E +    ++   N ++      GD+ + 
Sbjct: 684 GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 743

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           G     + ER+   +  T + ++  + +      A++L  K   + E +   LI+
Sbjct: 744 GAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPEKYHFLNEANSSALIK 798



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 135/333 (40%), Gaps = 35/333 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
             ++M+ +GL P   ++    SAY + G++D+A    N M+      P+V  Y  LI + 
Sbjct: 361 FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ-HGLSPNVVNYGALIDAL 419

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC--- 252
            K  R D  E    +M   G+  + V +N+++ G     K+E  E     M++ G C   
Sbjct: 420 CKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA 479

Query: 253 -------------------------------HPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
                                           PD F+   +IS Y  +G  ++ EK ++ 
Sbjct: 480 VFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDG 539

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
              +G+     T N L   Y  A   D    +   M ++   P VVTYN ++    +   
Sbjct: 540 MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 599

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
             + +E +  M + G K +  TY  +++   K+  + +   + + + +  + L+   F  
Sbjct: 600 FSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTI 659

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           +I A  + G  E   +LF  +     VP+ +T+
Sbjct: 660 MIGALLKGGRKEDAMDLFAAIPANGLVPNVVTY 692



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 146/364 (40%), Gaps = 45/364 (12%)

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQ- 161
           R+     ARC    +++    + +    + A  LF+ +L      SV  +  L++A  + 
Sbjct: 3   RRVGAAPARCLELERIIAERARSRSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRA 62

Query: 162 --SGLLDEAFSTINDM-KSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--- 214
             S   + A S  N M +  SD   P++ TYSILI    +F R   +E   A    +   
Sbjct: 63  RCSSASELAVSHFNRMVRECSDKVAPNLCTYSILIG---RFCRMGHLEHGFAAFGLILKT 119

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G     +  N ++ G    K+  E        +   GC PD  +   ++    N    E+
Sbjct: 120 GWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEE 179

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
                           ++ L+++   +GR                    P VV+Y+IVI 
Sbjct: 180 A---------------LELLHMMADDHGRRCP-----------------PNVVSYSIVIN 207

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            F   G ++K    F +M  RG+ P+ +TY +++    KA L  + + + +Q+ ++    
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKP 267

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           +   +NC+I  Y   G  +++ ++   M  R   PD  T+ +++      G    A+   
Sbjct: 268 NNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFF 327

Query: 455 NKMI 458
           + MI
Sbjct: 328 DSMI 331


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 166/353 (47%), Gaps = 8/353 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   LR Q W+      F  L+   GK     +A  + + M   G KPSV  
Sbjct: 120 KKWNLVSEILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVIS 179

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            TAL+ AYG++    +A +    M++ S  +P   TY I++KS  +  ++   E I  ++
Sbjct: 180 QTALMEAYGRAKQYRKAEAVFRRMQT-SGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDL 238

Query: 212 ---SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
                   +     ++ +I  Y KA  + +    F+ M E G       T NS++S   N
Sbjct: 239 LNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERG-IPLSTVTFNSLMSFETN 297

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              +  +   Y++     +K D+ + ++L K+YG+A   ++  +V + M      PT  +
Sbjct: 298 YKEVSSI---YDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKS 354

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+I+ F  +G +E+    FK M+   ++P+  +Y ++V AY  A  +   +   R+++
Sbjct: 355 YNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIK 414

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +  +   +  ++  Y +  +VE++  ++  M+ +   P+   + T++  +
Sbjct: 415 EDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVH 467



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 5/240 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++ M  K     QA  LF  M   G+  S   + +L+S         +  S+I D  
Sbjct: 253 FHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNY----KEVSSIYDQM 308

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             +  KPDV +YS+LIK+  K  R +    +  EM   G+  +  +YN +ID +  +   
Sbjct: 309 QRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLV 368

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           EE  + F AM       PD+ +  +M+ AY N+ +++  EK++      G+K ++     
Sbjct: 369 EEAHTVFKAM-RRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGT 427

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L K Y +    +++  V + M+ +   P    Y  +++  G+         +FK+M+ RG
Sbjct: 428 LMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARG 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 2/182 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +++ L+   GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SGL++EA +    M
Sbjct: 319 SYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAM 378

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +PD+ +Y+ ++ +       D  EK    +   G++ + V Y T++ GY K   
Sbjct: 379 RR-HRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNN 437

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E +   +  M    G  P+     +++  +G + +      W+ E    G  AD +  N
Sbjct: 438 VERVMRVYERM-RMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKN 496

Query: 296 IL 297
           IL
Sbjct: 497 IL 498



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 6/192 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++AYG  G+  + E+     N  G K  + +   L ++YGRA  Y K  +V   MQ   
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSG 207

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ VTY I++++F +    ++ E  F+ +   K    KP+   +  ++  Y KAG   
Sbjct: 208 PEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYA 267

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  Q+    + L T  FN ++S      + +++  ++  M+     PD ++++ +I
Sbjct: 268 QARKLFAQMSERGIPLSTVTFNSLMSF---ETNYKEVSSIYDQMQRTALKPDVVSYSLLI 324

Query: 439 QAYNALGMTEAA 450
           +AY      E A
Sbjct: 325 KAYGKARREEEA 336


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 197/438 (44%), Gaps = 18/438 (4%)

Query: 26  FRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEAL 85
           FR+ AI  +P  ++ L   K     +  +LR    +  I          N++   +L  L
Sbjct: 118 FRVDAIAFTP-LLKGLCADKRTSDAMDIVLRRMTELGCI---------PNVFSYNIL--L 165

Query: 86  DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSD 143
                + + Q AL++  ++   +   +     +   V+ G  K+   ++A   +  ML  
Sbjct: 166 KGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 225

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-SILIKSCTKFHRFD 202
           G+ P V  Y ++++A  ++  +D+A   +N M   +   PD  TY SIL   C+     +
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNSILHGYCSSGQPKE 284

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
            I   L +M   G+E   VTY+ ++D   K  +  E    F +M + G   P+I T  ++
Sbjct: 285 AI-GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG-LKPEITTYGTL 342

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +  Y   G + +M    +     G+  D    +IL  +Y + G  D+   V   M+++  
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  VTY  VI    K+G +E    YF++M   G+ P +I Y SL+          + + 
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P+ IT+ T+I  Y 
Sbjct: 463 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 443 ALGMTEAAQNLENKMIAM 460
             G  + A  L + M+++
Sbjct: 523 LAGKMDEAMKLLSGMVSV 540



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 6/350 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K +  ++A  +   M+ +G+ P    Y +++  Y  SG   EA   +  M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S    +PDV TYS+L+    K  R     KI   M+  G++    TY T++ GY     
Sbjct: 293 RS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             EM      MV +G  HPD +  + +I AY   G +++    +++    G+  +  T  
Sbjct: 352 LVEMHGLLDLMVRNG-IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYG 410

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +     ++G  +      + M      P  + YN +I         E+ EE   +M  R
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR 470

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N+I + S++ ++ K G +++ + +   +    V  +   +N +I+ Y  AG +++ 
Sbjct: 471 GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            +L   M      P+ +T++T+I  Y  +   E A  L  +M    E+SG
Sbjct: 531 MKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM----ESSG 576



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 2/309 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ LM  L K  +  +A  +F+ M   GLKP +  Y  L+  Y   G L E    + D+
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DL 361

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD Y +SILI +  K  + D    + ++M   G+  +AVTY  +I    K+ +
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M++ G   P     NS+I         E+ E+   E    G+  +    N
Sbjct: 422 VEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 480

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  S+ + G   +   + + M +    P V+TYN +I  +  AG +++  +    M   
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN++TY +L++ Y K   +     + +++E+S V  D   +N I+    Q       
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600

Query: 416 GELFLTMKE 424
            EL++ + E
Sbjct: 601 KELYVRITE 609



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 160/343 (46%), Gaps = 7/343 (2%)

Query: 122 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 179 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             C P+V++Y+IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  S++  M++  G  PD+ T NS+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 212 SDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   Y  +G   +    +  M+     P VVTY+++++   K G   +  + F  M  R
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP   TY +L+  Y+  G ++++  +L  +  + +  D   F+ +I AY + G V++ 
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQA 390

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +F  M+++   P+ +T+  +I      G  E A     +MI
Sbjct: 391 MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 153/371 (41%), Gaps = 36/371 (9%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ K   A+ +F  +RQQ        T+  ++ +L K  + E A L FE M+ +GL P  
Sbjct: 383 KQGKVDQAMLVFSKMRQQGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---------------------------- 181
            VY +L+         + A   I +M     C                            
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 182 ------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 KP+V TY+ LI       + D   K+L+ M  +G++ + VTY+T+I+GY K  +
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M ES G  PDI T N ++     +      ++ Y      G + ++ T N
Sbjct: 562 MEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     +  + D    +   +          T+NI+I+   K G  ++ ++ F      
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN  TY  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + 
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740

Query: 416 GELFLTMKERH 426
           G     + E+H
Sbjct: 741 GTYLSMIDEKH 751



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHR 200
           +D + P +  Y  L+    ++G LD  F+ + ++      + D   ++ L+K  C     
Sbjct: 80  ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK-KGFRVDAIAFTPLLKGLCADKRT 138

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFT 258
            D ++ +L  M+ LG   +  +YN ++ G     + +E       M +   GG  PD+ +
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
             ++I+ +   G+ +K    Y+E    G+  D+ T N +  +  +A   DK   V++ M 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           K    P  +TYN ++  +  +G  ++   + KKM+  G++P+ +TY  L+    K G  M
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   I   +    +  +   +  ++  Y   G + +M  L   M      PD+  F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 439 QAYNALGMTEAAQNLENKM 457
            AY   G  + A  + +KM
Sbjct: 379 CAYAKQGKVDQAMLVFSKM 397



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 158/352 (44%), Gaps = 11/352 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+    K  + +QA L+F  M   GL P+   Y A++    +SG +++A      M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P    Y+ LI      ++++  E+++ EM   GI  + + +N+IID + K  +
Sbjct: 433 ID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E E  F  MV  G   P++ T N++I+ Y  +G +++  K  +    +G+K +  T +
Sbjct: 492 VIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYS 550

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y +    +    +   M+     P ++TYNI+++   +       +E + ++   
Sbjct: 551 TLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITES 610

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDV 412
           G +    TY  ++    K  L    D  L+  +N    D+ L+   FN +I A  + G  
Sbjct: 611 GTQIELSTYNIILHGLCKNKL---TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           ++  +LF+       VP+  T+  M +     G+ E    L+   ++M++N 
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDNG 716



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 13/300 (4%)

Query: 168 AFSTINDMK--SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           A S  N M      +  PD+ TY ILI  C +  R DL    L  +   G    A+ +  
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 226 IIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           ++ G    K+  + M+     M E G C P++F+ N ++    +     + ++     ++
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELG-CIPNVFSYNILLKGLCDE---NRSQEALELLHM 183

Query: 285 M------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           M      G   D+ +   +   + + G  DK  S    M  R   P VVTYN +I    K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           A  ++K  E    M   G+ P+ +TY S++  Y  +G   +    L+++ +  V  D   
Sbjct: 244 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT 303

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           ++ ++    + G   +  ++F +M +R   P+  T+ T++Q Y   G       L + M+
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 151/315 (47%), Gaps = 2/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+      Y AL+       L+D A    ++MK +  C PD +TY +++ +  K  R + 
Sbjct: 64  GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMGKSMRIED 122

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           + KI  EM   G + + VTYNTII G  K+K  +E  + +  ++ S G  P   T   ++
Sbjct: 123 MLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM-SEGFSPTPCTYGPLL 181

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                 GNIE  E  ++E    G + +    NIL   Y  AG  +K+  + + M ++   
Sbjct: 182 DGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMN 241

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P + +Y +VI+T    G +     YFK++   G++P+ ITY  L+    K+G + +  S+
Sbjct: 242 PDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSL 301

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              +E   +  +   +N +I   G+AG   + G+++  +  +   P+  T+  +I+ Y+ 
Sbjct: 302 YNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSV 361

Query: 444 LGMTEAAQNLENKMI 458
            G  E A     +MI
Sbjct: 362 SGSPENAFAAYGRMI 376



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 2/262 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
             + Y++   T+  ++  L K K  ++A  L+  ++S+G  P+   Y  L+    + G +
Sbjct: 131 HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 190

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A +  ++M     C+P+   Y+IL+         + + ++   M   G+     +Y  
Sbjct: 191 EDAEALFDEMLECG-CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 249

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +ID      +  +  S F  + + G   PD+ T N +I   G SG +E+    YN+    
Sbjct: 250 VIDTLCADGRLNDGLSYFKQLTDMG-LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK 308

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+  ++ T N L    G+AG   +   + + +  + + P V TYN +I  +  +G  E  
Sbjct: 309 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 368

Query: 346 EEYFKKMKHRGMKPNSITYCSL 367
              + +M   G +PNS TY  L
Sbjct: 369 FAAYGRMIVGGCRPNSSTYMQL 390



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 103/244 (42%), Gaps = 1/244 (0%)

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           LG+     +YN +I G       +  E  FS M +  GC PD FT + ++ A G S  IE
Sbjct: 63  LGVSLKTGSYNALICGLVDEDLIDIAEELFSEM-KRLGCDPDEFTYHLILDAMGKSMRIE 121

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
            M K   E +  G K+   T N +     ++ M D+  ++   +    F PT  TY  ++
Sbjct: 122 DMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLL 181

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           +   K G+IE  E  F +M   G +PN   Y  L++ Y  AG   KV  +   +    + 
Sbjct: 182 DGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMN 241

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +  +I      G +      F  + +    PD IT+  +I      G  E A +L
Sbjct: 242 PDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSL 301

Query: 454 ENKM 457
            N M
Sbjct: 302 YNDM 305


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 176/387 (45%), Gaps = 9/387 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K + ++ A  ++  +  + + ++R  TF  ++  L K  +  +A  +F+ M   G
Sbjct: 445 LDGLFKMENFEGASTLWKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEIFDKMKDLG 503

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    Y  L+  Y ++  + +AF     M+      P +  Y+ LI    K  R   +
Sbjct: 504 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EPISPSIEMYNSLISGLFKSRRLVEV 562

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L EM   G+  + VTY  +IDG+ K    ++  SS+  M E+G    +I   ++M+S
Sbjct: 563 TDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG-LSANIIICSTMVS 621

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G I++      +    G   D +      KS  R     K+   +D   K F  P
Sbjct: 622 GLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDIRYAAIQKIADSLDESCKTFLLP 678

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             + YNI I    K G ++    +F  +  +G  P++ TYC+L+  YS AG + +   + 
Sbjct: 679 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 738

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++    ++ +   +N +I+   ++ +V++   LF  + ++   P+ +T+ T+I  Y  +
Sbjct: 739 DEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 798

Query: 445 GMTEAAQNLENKMIAMKENSGKKLIQC 471
           G  +AA  L++KMI   E      IQC
Sbjct: 799 GNMDAAFKLKDKMI---EEGISPSIQC 822



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 36/355 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  + + M   G+  +V  YT L+  Y +   +DEA   +  M+  +   PD   Y +
Sbjct: 244 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 303

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +  + D   ++L EM  LG++ +    N++I+GY K  +  E E   + MV+  
Sbjct: 304 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 363

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD ++ N+++  Y   G+  +     ++    G++  + T N L K   R G +D  
Sbjct: 364 -LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 422

Query: 311 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 335
             +   M KR   P                                   + +T+N +I  
Sbjct: 423 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 482

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G + + EE F KMK  G  P+ ITY +L+  Y KA  + +   +   +E   +   
Sbjct: 483 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 542

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +N +IS   ++  + ++ +L   M  R   P+ +T+  +I  +   GM + A
Sbjct: 543 IEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 597



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 155/363 (42%), Gaps = 38/363 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++   L+  L K  +   A  +++ M+  G+ P V + + +V+A+ + G +DEA   +  
Sbjct: 158 RSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 217

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+++   +P++ TY  LI         +  + +L  MS  G+  + VTY  +I GY K  
Sbjct: 218 MENLG-VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 276

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +E E     M E     PD      +I  Y  +G I+   +  +E   +G+K ++   
Sbjct: 277 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 336

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y + G   +   V+  M      P   +YN +++ + + GH  +      KM  
Sbjct: 337 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 396

Query: 355 RGMKPNSITYCSLVSAYSKAG----------LIMKVDSILRQVENSDVILDTPF------ 398
            G++P  +TY +L+    + G          L+MK      +V  S  +LD  F      
Sbjct: 397 EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYS-TLLDGLFKMENFE 455

Query: 399 --------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
                               FN +IS   + G + +  E+F  MK+  C PD IT+ T+I
Sbjct: 456 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 515

Query: 439 QAY 441
             Y
Sbjct: 516 DGY 518



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 153/340 (45%), Gaps = 12/340 (3%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+  + + A  L + ML  GLK ++ +  +L++ Y + G + EA   I  M    + K
Sbjct: 307 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLK 365

Query: 183 PDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           PD Y+Y+ L+   C + H    F+L +K+L E    GIE + +TYNT++ G  +   F++
Sbjct: 366 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE----GIEPTVLTYNTLLKGLCRVGAFDD 421

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               +  M++ G   PD    ++++       N E     + +    G      T N + 
Sbjct: 422 ALQIWHLMMKRG-VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 480

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               + G   +   + D M+     P  +TY  +I+ + KA ++ +  +    M+   + 
Sbjct: 481 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPIS 540

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   Y SL+S   K+  +++V  +L ++    +  +   +  +I  + + G ++K    
Sbjct: 541 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 600

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  M E     + I  +TM+     LG  + A  L  KM+
Sbjct: 601 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 640



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 168/382 (43%), Gaps = 22/382 (5%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGK-----------------CKQPEQASLLFE- 138
           +L  F  + +QQ ++   +++ KL+ +L +                 CK  ++ +++++ 
Sbjct: 51  SLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDE 110

Query: 139 -VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
            V +      S  V+  ++  Y + GL   A    ++M       P + + + L+ +  K
Sbjct: 111 LVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVK 169

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                    +  +M  +GI       + +++ + K  K +E  + F   +E+ G  P+I 
Sbjct: 170 NGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDE-AAGFVKKMENLGVEPNIV 228

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T +S+I+ Y + G++E  +      +  GV  ++ T  +L K Y +    D+   V+  M
Sbjct: 229 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM 288

Query: 318 QKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           Q+     P    Y ++I+ + + G I+       +M   G+K N     SL++ Y K G 
Sbjct: 289 QEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGE 348

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           I + + ++ ++ + ++  D+  +N ++  Y + G   +   L   M +    P  +T+ T
Sbjct: 349 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 408

Query: 437 MIQAYNALGMTEAAQNLENKMI 458
           +++    +G  + A  + + M+
Sbjct: 409 LLKGLCRVGAFDDALQIWHLMM 430


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 157/359 (43%), Gaps = 40/359 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M   G K  +  Y  L+ A  ++G++D+AF    DMK    C PD YTY+ILI+  
Sbjct: 208 VYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMS 266

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R         EM   G   + + +NTII+  GK K  +++    S MVE+  C P+
Sbjct: 267 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVEN-DCQPN 325

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-- 313
            FT +  +      G + ++ +     ++     +    + L KS  ++G   +  +V  
Sbjct: 326 QFTYSITLDILATEGQLHRLNEV---LDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFC 382

Query: 314 ---------------------------------MDFMQKRFFFPTVVTYNIVIETFGKAG 340
                                            +  M ++     V  YN+V    GK  
Sbjct: 383 RMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLK 442

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +E S    D   +N
Sbjct: 443 QVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYN 502

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      E A +L ++MI+
Sbjct: 503 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMIS 561



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 171/390 (43%), Gaps = 45/390 (11%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A ++F  ++Q+        T+T L+ M GK  +  +    F+ M+S G
Sbjct: 228 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 286

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI---LIKSCTKFHRF 201
              ++  +  ++ A G++ ++D+    ++ M   +DC+P+ +TYSI   ++ +  + HR 
Sbjct: 287 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE-NDCQPNQFTYSITLDILATEGQLHRL 345

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------- 250
           + +  I +      I      Y+ ++    K+    E  + F  M  S            
Sbjct: 346 NEVLDICSRFMNRSI------YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSM 399

Query: 251 -----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                                  G   D+   N + SA G    +  +   +++    G+
Sbjct: 400 LEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI 459

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+ T NI+  SYGR G+ DK   + + M+     P VVTYN +I   GK G +++   
Sbjct: 460 IPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHM 519

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            FK+M+ +G  P+  TY  L+  + K+  +    S+  ++ +     +   +N ++    
Sbjct: 520 LFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLE 579

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATM 437
           + G  E+  +L+ TMK++  +PD+IT++ +
Sbjct: 580 RRGKTEEAHKLYETMKQQGLIPDSITYSIL 609



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 1/197 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+    ++    F
Sbjct: 427 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 486

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E+  C PD+ T NS+I+  G  G++++    + E    G   D+ T +IL + +G+
Sbjct: 487 EVM-EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGK 545

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +   +   S+ D M      P +VTYNI+++   + G  E+  + ++ MK +G+ P+SIT
Sbjct: 546 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 605

Query: 364 YCSLVSAYSKAGLIMKV 380
           Y  L    S++   +++
Sbjct: 606 YSILERLESRSQRTVRI 622



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 187 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 246

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 247 MKQK-HCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNK 305

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 333
           M DK+  V+  M +    P   TY+I                                ++
Sbjct: 306 MVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLV 365

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           ++  K+GH  +    F +M +   K +   + S++     A   ++   +L  +    ++
Sbjct: 366 KSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIV 425

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N + SA G+   V  +  LF  MK    +PD  T+  MI +Y  +G+ + A  L
Sbjct: 426 TDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASEL 485



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 11/229 (4%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 271
           G    A +YN I+    + +          A +E  G   +I T+N ++   G       
Sbjct: 113 GFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMER 172

Query: 272 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E   KW       G++    T   + +++ R+    K   V + M+++ +   +  YN
Sbjct: 173 CLELASKW-------GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYN 225

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++++   KAG +++  + F+ MK +   P++ TY  L+    KAG   K  S   ++ + 
Sbjct: 226 MLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK 285

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +L+   FN II A G+   V+K+  +   M E  C P+  T++  + 
Sbjct: 286 GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 334



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 63/131 (48%)

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  +++   ++  + K  + +++M+ +G K +   Y  L+ A +KAG++ +   +   +
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           +    + D   +  +I   G+AG   K    F  M  + CV + I F T+I+A     M 
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 307

Query: 448 EAAQNLENKMI 458
           +    + +KM+
Sbjct: 308 DKVIFVLSKMV 318



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG  + +R V D M++      + T N+++   G    +E+  E   K    G++ +  
Sbjct: 132 RAGPSEALRLVAD-MERDGVAGNISTINLLVGMGGGGVEMERCLELASKW---GLRLSGY 187

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V++  ++F  M
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           K++HCVPD  T+  +I+     G T    +  ++M++
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 284



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++ Y     T++ L+   GK  + E A  LF+ M+S+G  P++  Y  L+    + G  
Sbjct: 525 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 584

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           +EA      MK      PD  TYSIL +  ++  R   I K
Sbjct: 585 EEAHKLYETMKQ-QGLIPDSITYSILERLESRSQRTVRIRK 624


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 162/335 (48%), Gaps = 3/335 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++++L K  +  +A  +   M+S+G+ P   +YT L+  + + G +  A+   ++M
Sbjct: 325 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 384

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      PD  TY+ +I    +  R    +K+  EM    +E   VTY  +IDGY K  K
Sbjct: 385 QK-RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 443

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E  S  + M++ G   P+I T  ++       G ++   +  +E    G++ +I T N
Sbjct: 444 MKEAFSLHNQMLQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYN 502

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +AG  D+   +M  M+   F P  VTY  +++ + K+  + +  E  ++M  R
Sbjct: 503 SLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDR 562

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P  +T+  L++ +  +G++   + +L+ +    ++ +   +N +I  Y    ++   
Sbjct: 563 ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 622

Query: 416 GELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 449
            E++  M  +  VPD  T+  +I+ +  A  M EA
Sbjct: 623 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 206/472 (43%), Gaps = 60/472 (12%)

Query: 40  ELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALK 99
           E G+  EA K   K+L     I        S    NL+   + E LD  IK     +ALK
Sbjct: 194 EAGMLDEARKLFDKMLNYGLLI--------SVDSCNLFISHLSEDLD-GIK-----IALK 239

Query: 100 IFGLLRQQQ--WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +F    +    W  A     T  +  LG+  +  Q  L  E+    G  P V  Y+ +++
Sbjct: 240 VFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELR---GCIPDVISYSTVIN 296

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
            Y Q G L      I +M+ +   KP+ YTY+ +I    K  +    E++L EM   GI 
Sbjct: 297 GYCQVGELQRVLKLIEEMQ-IKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIA 355

Query: 218 CSAVTYNTIIDGYGKA-------KKFEEMES--------SFSAMVESGGCH--------- 253
              V Y T+IDG+ K        + F+EM+         +++A++  G C          
Sbjct: 356 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVI-CGLCQTGRVMEADK 414

Query: 254 -----------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                      PD  T  ++I  Y   G +++    +N+   MG+  +I T   L     
Sbjct: 415 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 474

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G  D    ++  M ++     + TYN ++    KAG+I++  +  K M+  G  P+++
Sbjct: 475 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 534

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L+ AY K+  +++   +LRQ+ + ++      FN +++ +  +G +E   +L   M
Sbjct: 535 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 594

Query: 423 KERHCVPDNITFATMIQAY----NALGMTEAAQNLENKMIAMKENSGKKLIQ 470
            E+  +P+  T+ ++I+ Y    N    TE  + +  K +    N+   LI+
Sbjct: 595 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIK 646



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L +  +  +A  LF  M+   L+P    YTAL+  Y + G + EAFS  N M
Sbjct: 395 TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM 454

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +    P++ TY+ L     K    D   ++L EM   G+E +  TYN++++G  KA  
Sbjct: 455 LQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 513

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++       M E  G HPD  T  +++ AY  S  + +  +   +     ++  + T N
Sbjct: 514 IDQAVKLMKDM-EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFN 572

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L   +  +GM +    ++ +M ++   P   TYN +I+ +    ++    E ++ M  +
Sbjct: 573 VLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAK 632

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+  TY  L+  + KA  + +   + R +      L    +N +I  + +     + 
Sbjct: 633 GVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEA 692

Query: 416 GELFLTMKERHCVPD 430
            ELF  M+    V D
Sbjct: 693 RELFEQMRREGLVAD 707



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 176/434 (40%), Gaps = 62/434 (14%)

Query: 52  SKILRTEFAIKNIEKKVSSKKYKNLWPKPVLE---ALDEAIKQ-----KKWQLALKIFGL 103
           ++ +  + A  + + K++ K  ++ W  P L+   +    ++Q     K W    ++F +
Sbjct: 128 ARCIVAQIATASKDLKMARKLIQDFWVNPNLDVGVSFGHFVEQLIYTYKDWGSDPRVFDI 187

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD------------- 150
                        F +++V  G     ++A  LF+ ML+ GL  SVD             
Sbjct: 188 -------------FFQVLVEAG---MLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDL 231

Query: 151 -----------------------VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
                                   Y  +  +  Q G + EA   +  M+ +  C PDV +
Sbjct: 232 DGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQME-LRGCIPDVIS 290

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           YS +I    +      + K++ EM   G++ +  TYN +I    K  K  E E     M+
Sbjct: 291 YSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI 350

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            S G  PD     ++I  +   GN+    + ++E     +  D  T   +     + G  
Sbjct: 351 -SEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRV 409

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +   +   M  +   P  VTY  +I+ + K G +++      +M   G+ PN +TY +L
Sbjct: 410 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 469

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
                K G +   + +L ++    + L+   +N +++   +AG++++  +L   M+    
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 428 VPDNITFATMIQAY 441
            PD +T+ T++ AY
Sbjct: 530 HPDAVTYTTLMDAY 543


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 4/343 (1%)

Query: 117  FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
             + L+  L K K+  +A  L +   S G+      Y AL+       L+D A    ++MK
Sbjct: 744  LSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMK 803

Query: 177  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK- 235
             +  C PD +TY++++ +  K  R + + K+  EM   G E + VTYNTII G  K+K  
Sbjct: 804  RLG-CDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKML 862

Query: 236  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E M+  +  M E  G  P   T   ++      G IE  E  ++E    G K +    N
Sbjct: 863  YEAMDLYYKLMSE--GFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYN 920

Query: 296  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            IL   Y  AG  +K+  +   M  +   P + +Y ++I     AG +     YF+++   
Sbjct: 921  ILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTEL 980

Query: 356  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            G++P+ ITY  L+    ++G + +  S+   +E S +  +   +N +I   G+ G   + 
Sbjct: 981  GLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEA 1040

Query: 416  GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G+++  + +    P+  T+  +I  Y+  G T+ A     +MI
Sbjct: 1041 GKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMI 1083



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 159/346 (45%), Gaps = 3/346 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K     +A  +++VM +DG+ PSV  Y+ L+ A+G+  + +     + +M
Sbjct: 184 TYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDV-ETVVWLLREM 242

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     KP+VY+Y+I I+   +  RF+   KIL +M   G +   VT   +I     A +
Sbjct: 243 ED-HGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGR 301

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +  F  M  S    PD  T  +++   G++G+   + + +N     G   ++    
Sbjct: 302 VSDAKDVFWKMKASDQ-KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYT 360

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +  + G  D+   V D M+++   P   +YN +I  F KA  +    E F  M   
Sbjct: 361 AVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIH 420

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN  TY   ++ Y K+G  +K       +++  ++ D    N ++ +  ++G +   
Sbjct: 421 GPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMA 480

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             +F  +K     PDNIT+  MI+  +     + A  + ++MI  +
Sbjct: 481 KRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETR 526



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 160/357 (44%), Gaps = 4/357 (1%)

Query: 103 LLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+ + +  +    ++T  + +LG+  + E+A  + + M  +G KP V   T L+    
Sbjct: 238 LLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILC 297

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G + +A      MK+ SD KPD  TY  L+  C        + +I   M   G   + 
Sbjct: 298 DAGRVSDAKDVFWKMKA-SDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNV 356

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           V Y  ++D   +  + +E    F  M + G   P  ++ NS+IS +  +  +    + +N
Sbjct: 357 VAYTAVVDALCQVGRVDEASDVFDQMKQKG-IEPQQYSYNSLISGFLKADRLNHALELFN 415

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
             N+ G   +  T  +    YG++G   K     + M+ +   P VV  N V+ +  K+G
Sbjct: 416 HMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSG 475

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +   +  F ++K  G+ P++ITY  ++   SKA    +   +  ++  +  + D    N
Sbjct: 476 RLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVN 535

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I    +AG   +  ++F  +KE +  P + T+ T++      G  +   +L  +M
Sbjct: 536 SLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 5/323 (1%)

Query: 121 MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           + +L KC     +  + E+   M +DG   +V  YTA+V A  Q G +DEA    + MK 
Sbjct: 325 ITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQ 384

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
               +P  Y+Y+ LI    K  R +   ++   M+  G   +  TY   I+ YGK+ +  
Sbjct: 385 -KGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESL 443

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +    +  M +S G  PD+   N+++ +   SG +   ++ ++E   +GV  D  T  ++
Sbjct: 444 KAIKRYELM-KSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMM 502

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K   +A   D+   V   M +    P V+  N +I+T  KAG   +  + F ++K   +
Sbjct: 503 IKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNL 562

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P   TY +L++   + G + +V  +L ++ ++    +   +N ++    + G+V     
Sbjct: 563 DPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALG 622

Query: 418 LFLTMKERHCVPDNITFATMIQA 440
           +   M  + C+PD  ++ T +  
Sbjct: 623 MLYNMTMKGCMPDLSSYNTALHG 645



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 152/325 (46%), Gaps = 3/325 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +T++ LM+  GK +  E    L   M   G+KP+V  YT  +   GQ+G  +EA+  +  
Sbjct: 218 RTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQK 276

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+    CKPDV T ++LI+      R    + +  +M     +   VTY T++D  G   
Sbjct: 277 MED-EGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNG 335

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               +   ++AM ++ G + ++    +++ A    G +++    +++    G++    + 
Sbjct: 336 DSRSVIEIWNAM-KADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSY 394

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   + +A   +    + + M      P   TY + I  +GK+G   K  + ++ MK 
Sbjct: 395 NSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKS 454

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+ P+ +   +++ + +K+G +     +  ++++  V  D   +  +I    +A + ++
Sbjct: 455 KGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADE 514

Query: 415 MGELFLTMKERHCVPDNITFATMIQ 439
             ++F  M E  CVPD +   ++I 
Sbjct: 515 AMKVFSEMIETRCVPDVLAVNSLID 539



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 119/275 (43%), Gaps = 3/275 (1%)

Query: 184  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
            D +  S LI+   K  +     +++ +   LG+     +YN +I G       +  E  F
Sbjct: 740  DDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLF 799

Query: 244  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
            S M +  GC PD FT N ++ A G S  IE M K   E +  G ++   T N +     +
Sbjct: 800  SEM-KRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVK 858

Query: 304  AGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            + M Y+ M      M +  F PT  TY  +++   K G IE  E+ F +M   G KPN  
Sbjct: 859  SKMLYEAMDLYYKLMSEG-FSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRA 917

Query: 363  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
             Y  L++ Y  AG   KV  + + + +  +  D   +  +I A   AG +      F  +
Sbjct: 918  IYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQL 977

Query: 423  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             E    PD IT+  +I      G  E A +L N M
Sbjct: 978  TELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDM 1012



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 114/259 (44%), Gaps = 2/259 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q+  + +  ++  L+    K  +   A  LF  M   G  P+   Y   ++ YG+SG  
Sbjct: 383 KQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGES 442

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
            +A      MKS     PDV   + ++ S  K  R  + +++  E+  +G+    +TY  
Sbjct: 443 LKAIKRYELMKS-KGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTM 501

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I    KA   +E    FS M+E+  C PD+  +NS+I     +G   +  K ++E   M
Sbjct: 502 MIKCCSKASNADEAMKVFSEMIET-RCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEM 560

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
            +     T N L    GR G   ++  +++ M    + P ++TYN V++   K G +   
Sbjct: 561 NLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYA 620

Query: 346 EEYFKKMKHRGMKPNSITY 364
                 M  +G  P+  +Y
Sbjct: 621 LGMLYNMTMKGCMPDLSSY 639



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 123/276 (44%), Gaps = 7/276 (2%)

Query: 97   ALKIFGLLRQQQ-----WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
            +++I  +L+ Q+      Y++   T+  ++  L K K   +A  L+  ++S+G  P+   
Sbjct: 824  SMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCT 883

Query: 152  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            Y  L+    + G +++A    ++M     CKP+   Y+IL+         + + ++   M
Sbjct: 884  YGPLLDGLLKDGKIEDAEDLFDEMLDYG-CKPNRAIYNILLNGYRLAGNTEKVCELFQNM 942

Query: 212  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               GI     +Y  +I     A +  +  S F  + E G   PD+ T N +I   G SG 
Sbjct: 943  VDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELG-LEPDLITYNLLIHGLGRSGR 1001

Query: 272  IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +E+    +N+    G+  ++ T N L    G+ G   +   + + + K  + P V TYN 
Sbjct: 1002 LEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNA 1061

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +I  +  +G  +     + +M   G  PNS TY  L
Sbjct: 1062 LIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 1/202 (0%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + N M+      G +  M + ++      VKA++ T   + +S G  G        +  M
Sbjct: 114 SCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMM 173

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           ++        TYN +I    K+G+  +  E +K M   G+ P+  TY  L+ A+ K   +
Sbjct: 174 KEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRD-V 232

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             V  +LR++E+  V  +   +   I   GQAG  E+  ++   M++  C PD +T   +
Sbjct: 233 ETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVL 292

Query: 438 IQAYNALGMTEAAQNLENKMIA 459
           IQ     G    A+++  KM A
Sbjct: 293 IQILCDAGRVSDAKDVFWKMKA 314


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 158/354 (44%), Gaps = 6/354 (1%)

Query: 98  LKIFGLLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L +F  +R       R    T+  L+         +Q+ +L   ML  G+ P    Y  +
Sbjct: 3   LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYI 62

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           V A+  +G L       ++M +V     D   Y  L+++ T+         +L +M   G
Sbjct: 63  VDAFASAGNLSRVAELFSEM-AVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADG 121

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              +A TY  ++D YG+  +F+ +   F  M  +    PD  T N +   YG+ G  +++
Sbjct: 122 CAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA--VPPDTATYNVLFRVYGDGGFFKEV 179

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + +++    GV+ D+ T   +  + GR G+++  R V+++M +    PT   Y  ++E 
Sbjct: 180 VELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEA 239

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDVIL 394
            G A   E+    F  M   G  P   TY +L  AY++ GL  + ++I  R   N+ +  
Sbjct: 240 LGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQK 299

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   F+ +I AY Q   ++   + ++ M++    PD  +   ++ AY   G+ +
Sbjct: 300 NKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 353



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 134/341 (39%), Gaps = 39/341 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M   G       Y  L+ A+ + G   EA + +  M++   C P   TY +L+   
Sbjct: 78  LFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQA-DGCAPTAATYRVLLDLY 136

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  RFD + ++  EM    +     TYN +   YG    F+E+   F  M+E+G   PD
Sbjct: 137 GRQGRFDGVRELFREMR-TAVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETG-VEPD 194

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T  ++++A G  G  E   +        G+         L ++ G A MY++     +
Sbjct: 195 MVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 254

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLV------ 368
            M +    PT+ TYN +   + + G  ++ E  F +M +  G++ N  ++ +L+      
Sbjct: 255 MMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQG 314

Query: 369 -----------------------------SAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
                                        +AY  AG+I +      ++++S  +     +
Sbjct: 315 AQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAY 374

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             ++S Y +        ++   MK       +   A++I+ 
Sbjct: 375 CMMLSLYARNDRWADAYDMLEEMKTNRASSTHQVIASLIKG 415



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 115/304 (37%), Gaps = 40/304 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +M   G+    E A  + E M  +G+ P+ D YT LV A G + + +EA+   N M
Sbjct: 197 TCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMM 256

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +                                    G   +  TYNT+   Y +   
Sbjct: 257 TEI------------------------------------GSLPTLETYNTLAFAYARGGL 280

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  + G   +  + +++I AY     ++   K Y E        D ++L 
Sbjct: 281 FQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 340

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-H 354
            +  +Y  AG+ D+ +   + +Q     P+++ Y +++  + +        +  ++MK +
Sbjct: 341 GVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTN 400

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA---YGQAGD 411
           R    + +    +   Y  +     V+  L             FFN ++     +GQ G 
Sbjct: 401 RASSTHQVIASLIKGEYDDSSNWQMVEYALENSTMEGCDYSLRFFNALLDVLWWFGQKGR 460

Query: 412 VEKM 415
             ++
Sbjct: 461 AARV 464



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V+ D+ T N L  +     + D+   ++  M +    P  V+Y  +++ F  AG++ ++ 
Sbjct: 17  VRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRVA 76

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F +M   G   ++  Y  L+ A+++ G   +  ++LRQ++          +  ++  Y
Sbjct: 77  ELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLY 136

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           G+ G  + + ELF  M+     PD  T+  + + Y   G  +    L + M+
Sbjct: 137 GRQGRFDGVRELFREMRT-AVPPDTATYNVLFRVYGDGGFFKEVVELFHDML 187



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 349 FKKMKHRG---MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
           F +M+H     ++P+  TY +L++A +   L  + + +LR +  + V  DT  +  I+ A
Sbjct: 6   FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDA 65

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +  AG++ ++ ELF  M       D   +  +++A+  +G T  A  +  +M A
Sbjct: 66  FASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQA 119


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 188/464 (40%), Gaps = 69/464 (14%)

Query: 59  FAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           F +  I    + +K  NL  +   E L++   +    LAL  F  +     ++    T+T
Sbjct: 20  FVLNTINPLQNEQKDLNLLKES--EVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYT 77

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
            ++  LG  +  +    L ++M  +G+  + D++  +++AY ++GL ++A  T   +   
Sbjct: 78  TMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEF 137

Query: 179 SDCKP-----------------------------------DVYTYSILIKSCTKFHRFDL 203
             CKP                                   +VYTY++L+K+  K  R D 
Sbjct: 138 G-CKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDA 196

Query: 204 IEKILAEMSYLGIECSAVTY------------------------------NTIIDGYGKA 233
             K+LAEMSY G    AV+Y                              N +I+G+ + 
Sbjct: 197 ARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCRE 256

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K EE+   F+ M   G   PD+ T +++I+     GN+E       +  L G   ++ T
Sbjct: 257 HKMEEVFELFNEMAVEG-IDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHT 315

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L K Y   G   +   + + M +    P  V YN +I      G + +     +KM+
Sbjct: 316 FTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKME 375

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+ PN  TY +L+  ++KAG ++    I  ++  +  + +   + C++    +     
Sbjct: 376 RNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFN 435

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
               L   M   +C P+ ITF T I+     G TE A  + N+M
Sbjct: 436 HALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQM 479



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 165/369 (44%), Gaps = 22/369 (5%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVML--GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALV 156
            G + + +    R ++F  +   L  G C++   E+   LF  M  +G+ P V  Y+ ++
Sbjct: 226 LGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVI 285

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILAEMS 212
           +   + G ++ A + +  M  +  C P+V+T++ L+K      R     DL  +++ E  
Sbjct: 286 NTLSEMGNVEMALAVLAKM-FLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQE-- 342

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G E + V YNT+I G     K  E   S S  +E  G  P+  T +++I  +  +G++
Sbjct: 343 --GSEPNTVAYNTLIHGLCSYGKMVE-AVSVSQKMERNGVFPNETTYSTLIDGFAKAGDL 399

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
               + +N+    G   ++     +     R  M++    +++ M      P  +T+N  
Sbjct: 400 VGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTF 459

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I+    +G  E   +   +M+  G  PN  TY  ++     A    +   I+ ++E  ++
Sbjct: 460 IKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEI 519

Query: 393 ILDTPFFNCIISAYGQA----GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
             +   +N I+S +  A    G ++  G+L +   +    PD+IT+ T+I AY   G  +
Sbjct: 520 KSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTK----PDSITYNTVIYAYCKQGEVK 575

Query: 449 AAQNLENKM 457
            A  L +++
Sbjct: 576 TAIQLVDRL 584



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 17/200 (8%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            TF K +   GK    E A  +   M   G  P+V  Y  ++     +    EA   + +
Sbjct: 457 NTFIKGLCCSGK---TEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGE 513

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++ + + K ++ TY+ ++        F    +I  ++   G +  ++TYNT+I  Y K  
Sbjct: 514 IEEM-EIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQG 572

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK----MEKWYNEFNLMGVKAD 290
           + +        + + G  +PD+FT  S++    N   +++    ++K  NE    G+  +
Sbjct: 573 EVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINE----GICPN 628

Query: 291 IQTLNILTKSYGRAGMYDKM 310
             T N L +     G++ K+
Sbjct: 629 RATWNALVR-----GLFSKL 643



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142
           E LD     K+ + AL+I G + + +  ++   T+  ++         + A  +   +L 
Sbjct: 493 EVLDGLFNAKRTREALQIVGEIEEME-IKSNLVTYNTILSGFCHAGMFKGALQIAGKLLV 551

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            G KP    Y  ++ AY + G +  A   ++ +    +  PDV+TY+ L+     +   D
Sbjct: 552 GGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVD 611

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDG 229
                L +M   GI  +  T+N ++ G
Sbjct: 612 EAVVHLDKMINEGICPNRATWNALVRG 638


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 159/332 (47%), Gaps = 2/332 (0%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           C + + A  LF  ML     PS+  +T +++A  +    D      + M+++     D+Y
Sbjct: 593 CIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLG-ISHDLY 651

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           +++ILI    +  RF L   +L +M  LG + S VT  ++++G+ +  +F+E  S   +M
Sbjct: 652 SFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 711

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E G   P++   N++I+    + ++    + +      G+ AD  T N L      +G 
Sbjct: 712 AELG-LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           +     ++  M KR   P V+ +  +I+TF K G++ + +  +K+M  R + PN +TY S
Sbjct: 771 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNS 830

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++ +   G +     +   + +     D   +N +I+ + ++  VE   +LF  M  + 
Sbjct: 831 LINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQG 890

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            V D  T+ T+I  Y   G    AQ + N+M+
Sbjct: 891 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 922



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +FT L+    +C +   A  L   M+  G +PS+    +L++ + Q     EA S ++ M
Sbjct: 652 SFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 711

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +   +P+V  Y+ +I    K    +   +I   M   GI   AVTYNT+I G   + +
Sbjct: 712 AELG-LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           + +       MV+     P++    ++I  +   GN+ + +  Y E     V  +I T N
Sbjct: 771 WTDAARLLRDMVKRK-IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYN 829

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +   G     + + D M  +  FP VVTYN +I  F K+  +E   + F +M H+
Sbjct: 830 SLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQ 889

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  ++ TY +L+  Y +AG +     +  ++ +  V  D   +N ++      G +EK 
Sbjct: 890 GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKA 949

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             +   +++     D IT+  +IQ 
Sbjct: 950 LVMVEDLQKNQMDVDIITYNIIIQG 974



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 159/332 (47%), Gaps = 7/332 (2%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--FSTINDMKSVSDCKPDVYTY 188
           E A  LF  M+     PSV  +T L++A       +    FS   ++  +S    D+Y++
Sbjct: 47  EDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH---DLYSF 103

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +ILI    +  R  L   IL +M  LG + S VT+ +++ G+    +  +  S  ++MV+
Sbjct: 104 TILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVK 163

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMY 307
           SG   P++   N++I     +G++    +  NE    G + AD+ T N L      +G +
Sbjct: 164 SGY-EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW 222

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +   ++  M KR   P V T+  +I+ F K G++++ +E +K+M    + PN++TY SL
Sbjct: 223 RQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSL 282

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++     G +         + +     +   +N +I+ + ++  VE   +LF  M     
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGL 342

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           V D  T+ T+I  Y  +G    A+++ + M++
Sbjct: 343 VGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVS 374



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 136/309 (44%), Gaps = 2/309 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K     +AL++   + ++    A   T+  L+  L    +  QA+ +   M    
Sbjct: 177 IDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRR 236

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P V  +TAL+ A+ + G LDEA      M   S   P+  TY+ LI       R    
Sbjct: 237 INPDVFTFTALIDAFVKQGNLDEAQELYKQMLQ-SSIGPNTVTYNSLINGLCMHGRLYHA 295

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +K    M+  G   + VTYNT+I+G+ K+++ E+    F  M   G    D FT N++I 
Sbjct: 296 KKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREG-LVGDTFTYNTLIH 354

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            Y   G +   +  ++     GV  DI T  IL       G         + M+    + 
Sbjct: 355 GYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYL 414

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +V YNI+I    KA  +E+  E F ++   G+KP++ TY  ++    K G   + D + 
Sbjct: 415 GIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELF 474

Query: 385 RQVENSDVI 393
           R+++   +I
Sbjct: 475 RRMKEDGII 483



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 38/378 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +FT L+    +C +   A  +   M+  G  PS+  + +L+  +     + +AFS +  M
Sbjct: 102 SFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASM 161

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
              S  +P+V  Y+ LI    K    ++  ++L EM   G +    VTYNT++ G   + 
Sbjct: 162 VK-SGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSG 220

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           ++ +       M +    +PD+FT  ++I A+   GN+++ ++ Y +     +  +  T 
Sbjct: 221 EWRQAARILRDMTKRR-INPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L       G     +   D M  +  FP VVTYN +I  F K+  +E   + F++M  
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYR 339

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVI----------------- 393
            G+  ++ TY +L+  Y + G +     I   + +     D+I                 
Sbjct: 340 EGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGS 399

Query: 394 --------------LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
                         L    +N +I    +A  VE+  ELF  +      PD  T+  MI 
Sbjct: 400 AMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMIL 459

Query: 440 AYNALGMTEAAQNLENKM 457
                G    A  L  +M
Sbjct: 460 GLCKNGPRREADELFRRM 477



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 147/334 (44%), Gaps = 2/334 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           FT+++  + K  + +    LF  M + G+   +  +T L+  + +      A + +  M 
Sbjct: 618 FTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMM 677

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +   +P + T   L+    + +RF     ++  M+ LG+E + V YNT+I+G  K +  
Sbjct: 678 KLG-FQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDL 736

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                 F  M E  G   D  T N++IS   NSG      +   +     +  ++     
Sbjct: 737 NNALEIFYGM-EKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTA 795

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  ++ + G   + +++   M +R   P ++TYN +I  F   G +   +  F  M  +G
Sbjct: 796 LIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG 855

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             P+ +TY +L++ + K+  +     +  ++ +  ++ D   +N +I  Y QAG +    
Sbjct: 856 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQ 915

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           ++F  M +    PD +T+  ++      G  E A
Sbjct: 916 KVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKA 949



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 142/326 (43%), Gaps = 5/326 (1%)

Query: 122  VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
            V+ G CK  +   A  +F  M   G+      Y  L+S    SG   +A   + DM    
Sbjct: 726  VINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVK-R 784

Query: 180  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
               P+V  ++ LI +  K       + +  EM    +  + +TYN++I+G+    +  + 
Sbjct: 785  KIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDA 844

Query: 240  ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
            +  F  MV S GC PD+ T N++I+ +  S  +E   K + E    G+  D  T N L  
Sbjct: 845  KHMFDLMV-SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIH 903

Query: 300  SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
             Y +AG  +  + V + M      P +VTYNI+++     G IEK     + ++   M  
Sbjct: 904  GYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDV 963

Query: 360  NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
            + ITY  ++    +   + +   + R +    V LD   +  +IS   + G   +  +L 
Sbjct: 964  DIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLC 1023

Query: 420  LTMKERHCVP-DNITFATMIQAYNAL 444
              MKE   +P + I   T+   Y +L
Sbjct: 1024 TRMKEDGFMPSERIYDETLRDHYTSL 1049



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 1/241 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +  ++    K  KF+ +   F  M E+ G   D+++   +I  +            
Sbjct: 614 SIVDFTRVLTAIAKMNKFDIVIYLFHKM-ENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G +  I TL  L   + +   + +  S++D M +    P VV YN VI    K
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              +    E F  M+ +G+  +++TY +L+S    +G       +LR +    +  +  F
Sbjct: 733 NRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIF 792

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           F  +I  + + G++ +   L+  M  R   P+ +T+ ++I  +   G    A+++ + M+
Sbjct: 793 FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852

Query: 459 A 459
           +
Sbjct: 853 S 853


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 159/358 (44%), Gaps = 43/358 (12%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   LR Q W+      F  L+   GK     +A  +  +M   G  P+V  
Sbjct: 116 KKWNLVSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVS 175

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-------------- 197
           +TAL+ AYG+    + A +    M+S    +P   TY I++K+  +              
Sbjct: 176 HTALMEAYGRGRRYNNAEAIFRRMQS-GGPEPSALTYQIMLKTFVEGSKFKEAEELFDSL 234

Query: 198 --------------FH----------RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
                         FH           ++   K+ AEM+  G+  + VTYN+++      
Sbjct: 235 LNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSF---E 291

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
             ++E+   +  M +  G  PD+ +   +ISAYG +   E+    + E    G++   + 
Sbjct: 292 TNYKEVSKIYDQM-QRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKA 350

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            NIL  ++  +GM ++ + V   M++    P + +Y  ++  +  A  +E  E +F+++K
Sbjct: 351 YNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLK 410

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
             G +PN +TY +L+  Y+K   + K+     +++ + + ++      I+ AYG+  D
Sbjct: 411 QDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKD 468



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 135/271 (49%), Gaps = 11/271 (4%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           + +LI +  K   F+  EK+L  M+  G   + V++  +++ YG+ +++   E+ F  M 
Sbjct: 141 FVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRM- 199

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-----VKADIQTLNILTKSYG 302
           +SGG  P   T   M+  +      ++ E+ ++  +L+      +K D +  +++   + 
Sbjct: 200 QSGGPEPSALTYQIMLKTFVEGSKFKEAEELFD--SLLNKEKPVLKPDQKMFHMIIYMFK 257

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +AG Y+K R V   M  R    T VTYN ++        + K+   + +M+  G++P+ +
Sbjct: 258 KAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKI---YDQMQRAGLQPDVV 314

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y  L+SAY KA    +  ++  ++ ++ +      +N ++ A+  +G VE+   +F +M
Sbjct: 315 SYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSM 374

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           K   C PD  ++ TM+ AY      E A+N 
Sbjct: 375 KRDRCSPDICSYTTMLSAYVNASDMEGAENF 405



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 2/192 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+   Q    ++  L+   GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SG++
Sbjct: 305 QRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMV 364

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A      MK    C PD+ +Y+ ++ +       +  E     +   G   + VTY T
Sbjct: 365 EQAKIVFKSMKR-DRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGT 423

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I GY K    E+M   +  M +  G   +   L +++ AYG + +      W+NE    
Sbjct: 424 LIKGYAKINNLEKMIKRYEEM-KVNGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESC 482

Query: 286 GVKADIQTLNIL 297
           G++ D +  NIL
Sbjct: 483 GLRPDQKAKNIL 494


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 172/374 (45%), Gaps = 6/374 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K + ++ A  ++  +  + + ++R  TF  ++  L K  +  +A  +F+ M   G
Sbjct: 479 LDGLFKMENFEGASTLWKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    Y  L+  Y ++  + +AF     M+      P +  Y+ LI    K  R   +
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EPISPSIEMYNSLISGLFKSRRLVEV 596

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L EM   G+  + VTY  +IDG+ K    ++  SS+  M E+G    +I   ++M+S
Sbjct: 597 TDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG-LSANIIICSTMVS 655

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G I++      +    G   D +      KS  R     K+   +D   K F  P
Sbjct: 656 GLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDIRYAAIQKIADSLDESCKTFLLP 712

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             + YNI I    K G ++    +F  +  +G  P++ TYC+L+  YS AG + +   + 
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 772

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++    ++ +   +N +I+   ++ +V++   LF  + ++   P+ +T+ T+I  Y  +
Sbjct: 773 DEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 832

Query: 445 GMTEAAQNLENKMI 458
           G  +AA  L++KMI
Sbjct: 833 GNMDAAFKLKDKMI 846



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 36/355 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  + + M   G+  +V  YT L+  Y +   +DEA   +  M+  +   PD   Y +
Sbjct: 278 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 337

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +  + D   ++L EM  LG++ +    N++I+GY K  +  E E   + MV+  
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-W 396

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD ++ N+++  Y   G+  +     ++    G++  + T N L K   R G +D  
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 311 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 335
             +   M KR   P                                   + +T+N +I  
Sbjct: 457 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G + + EE F KMK  G  P+ ITY +L+  Y KA  + +   +   +E   +   
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 576

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +N +IS   ++  + ++ +L   M  R   P+ +T+  +I  +   GM + A
Sbjct: 577 IEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 155/363 (42%), Gaps = 38/363 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++   L+  L K  +   A  +++ M+  G+ P V + + +V+A+ + G +DEA   +  
Sbjct: 192 RSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+++   +P++ TY  LI         +  + +L  MS  G+  + VTY  +I GY K  
Sbjct: 252 MENLG-VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 310

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +E E     M E     PD      +I  Y  +G I+   +  +E   +G+K ++   
Sbjct: 311 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 370

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y + G   +   V+  M      P   +YN +++ + + GH  +      KM  
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430

Query: 355 RGMKPNSITYCSLVSAYSKAG----------LIMKVDSILRQVENSDVILDTPF------ 398
            G++P  +TY +L+    + G          L+MK      +V  S  +LD  F      
Sbjct: 431 EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYS-TLLDGLFKMENFE 489

Query: 399 --------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
                               FN +IS   + G + +  E+F  MK+  C PD IT+ T+I
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 439 QAY 441
             Y
Sbjct: 550 DGY 552



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 157/343 (45%), Gaps = 34/343 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + +  L+  L K ++  + + L   M   GL P++  Y AL+  + + G+LD+AFS+  +
Sbjct: 578 EMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFE 637

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIEC------------ 218
           M   +    ++   S ++    +  R D    L++K++    +   EC            
Sbjct: 638 MTE-NGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQ 696

Query: 219 ----------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
                           + + YN  I G  K  K ++    FS M+   G  PD FT  ++
Sbjct: 697 KIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTL 755

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  Y  +GN+++  +  +E    G+  +I T N L     ++   D+ + +   + ++  
Sbjct: 756 IHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGL 815

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
           FP VVTYN +I+ + K G+++   +   KM   G+ P+ +TY +L++   K G I +   
Sbjct: 816 FPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMK 875

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +L Q+  + V      +  ++  Y ++G+++K+ +L+  M  R
Sbjct: 876 LLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIR 918



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 153/340 (45%), Gaps = 12/340 (3%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+  + + A  L + ML  GLK ++ +  +L++ Y + G + EA   I  M    + K
Sbjct: 341 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLK 399

Query: 183 PDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           PD Y+Y+ L+   C + H    F+L +K+L E    GIE + +TYNT++ G  +   F++
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE----GIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               +  M++ G   PD    ++++       N E     + +    G      T N + 
Sbjct: 456 ALQIWHLMMKRG-VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               + G   +   + D M+     P  +TY  +I+ + KA ++ +  +    M+   + 
Sbjct: 515 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPIS 574

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   Y SL+S   K+  +++V  +L ++    +  +   +  +I  + + G ++K    
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  M E     + I  +TM+     LG  + A  L  KM+
Sbjct: 635 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/485 (19%), Positives = 207/485 (42%), Gaps = 48/485 (9%)

Query: 1   MHLSNSIFTPPT-TATHLPKFYKEPVFRIQAI------KRSPGPIQELGIQKEAEKDLSK 53
           MH   SIFTPP  +  HL    + P+   + +      +  P P  EL         +S+
Sbjct: 1   MHRYFSIFTPPLPSRLHL----RRPIHLSRTLLWKLRDESHPAP-PEL---------VSR 46

Query: 54  ILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR 113
           I R       + +  +  K   ++   +++A+   ++      +L  F  + +QQ ++  
Sbjct: 47  ICRLVL----LRRCNAISKLNFVFSDDIVDAVLRNLRLNP-TASLGFFQFVSKQQNFRPN 101

Query: 114 CQTFTKLMVMLGK-----------------CKQPEQASLLFE--VMLSDGLKPSVDVYTA 154
            +++ KL+ +L +                 CK  ++ +++++  V +      S  V+  
Sbjct: 102 VKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDM 161

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++  Y + GL   A    ++M       P + + + L+ +  K         +  +M  +
Sbjct: 162 ILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRV 220

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           GI       + +++ + K  K +E  + F   +E+ G  P+I T +S+I+ Y + G++E 
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDE-AAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEA 279

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVI 333
            +      +  GV  ++ T  +L K Y +    D+   V+  MQ+     P    Y ++I
Sbjct: 280 AKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLI 339

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + + + G I+       +M   G+K N     SL++ Y K G I + + ++ ++ + ++ 
Sbjct: 340 DGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLK 399

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D+  +N ++  Y + G   +   L   M +    P  +T+ T+++    +G  + A  +
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 454 ENKMI 458
            + M+
Sbjct: 460 WHLMM 464



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 4/214 (1%)

Query: 121 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           + + G CK  + + A   F ++   G  P    Y  L+  Y  +G +DEAF   ++M   
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR- 777

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               P++ TY+ LI    K    D  +++  ++   G+  + VTYNT+IDGY K    + 
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 837

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                  M+E G   P + T +++I+     G+IE+  K  N+    GV + +     L 
Sbjct: 838 AFKLKDKMIEEG-ISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLV 896

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           + Y R+G   K+  + D M  R    T +++  V
Sbjct: 897 QGYIRSGEMQKIHKLYDMMHIRCLSTTAISHKQV 930


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 9/320 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++Q  ++    ++T ++ +LG+ +Q      L + M S   KP+V  Y  +
Sbjct: 348 IALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRI 407

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG++  L EA     +M+  +  +PD  TY  LI    K    +    +   M  +G
Sbjct: 408 IHAYGRANYLREAVKVFEEMQK-AGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVG 466

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +++  GK          F  MVE+ GC P++ T N MI+    + N E +
Sbjct: 467 LSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVEN-GCTPNLVTYNIMIALQAKARNYENV 525

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIE 334
            K Y +  + G + D  T +I+ +  G  G  D+  +V  F++ R  + P    Y ++++
Sbjct: 526 VKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAV--FIEMRHDWAPDEPVYGLLVD 583

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +GKAG+++K   ++  M   G++PN  T  SL+SA+ K        S+L+ +    ++ 
Sbjct: 584 LWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVP 643

Query: 395 D----TPFFNCIISAYGQAG 410
                T   +C   A  Q G
Sbjct: 644 SLQTYTLLLSCCTEAQAQMG 663



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 131/278 (47%), Gaps = 2/278 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D ++Y+ +I    +  +F  + K+L EM+ +  + + VTYN II  YG+A    E   
Sbjct: 363 KHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVK 422

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M +  G  PD  T  ++I  +   G +E     Y     +G+  D  T + +    
Sbjct: 423 VFEEM-QKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCL 481

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+ G       +   M +    P +VTYNI+I    KA + E + + +K M+  G +P+ 
Sbjct: 482 GKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDK 541

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  ++      G + + +++  ++ + D   D P +  ++  +G+AG+V+K    +  
Sbjct: 542 ITYSIVMEVLGHCGHLDEAEAVFIEMRH-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHA 600

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M +    P+  T  +++ A+  +   + A ++   M+A
Sbjct: 601 MLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLA 638



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 88/170 (51%), Gaps = 6/170 (3%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G K D  +   +    G+A  +  MR ++D M      PTVVTYN +I  +G+A ++ + 
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREA 420

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F++M+  G +P+ +TYC+L+  ++K G +     +  +++   +  DT  ++ +++ 
Sbjct: 421 VKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNC 480

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
            G+ G +    +LF  M E  C P+ +T+  MI       +   A+N EN
Sbjct: 481 LGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMI------ALQAKARNYEN 524



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 2/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    +Y T+I   G+A++F  M      M  S  C P + T N +I AYG +  + +
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEM-NSVHCKPTVVTYNRIIHAYGRANYLRE 419

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             K + E    G + D  T   L   + + G  +    +   MQ+    P   TY+ ++ 
Sbjct: 420 AVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVN 479

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GK GH+    + F +M   G  PN +TY  +++  +KA     V  + + ++ +    
Sbjct: 480 CLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRP 539

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +++   +F+ M+     PD   +  ++  +   G  + A    
Sbjct: 540 DKITYSIVMEVLGHCGHLDEAEAVFIEMRHD-WAPDEPVYGLLVDLWGKAGNVDKALGWY 598

Query: 455 NKMI 458
           + M+
Sbjct: 599 HAML 602


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 157/359 (43%), Gaps = 40/359 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M   G K  +  Y  L+ A  ++G++D+AF    DMK    C PD YTY+ILI+  
Sbjct: 150 VYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMS 208

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R         EM   G   + + +NTII+  GK K  +++    S MVE+  C P+
Sbjct: 209 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVEN-DCQPN 267

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-- 313
            FT +  +      G + ++ +     ++     +    + L KS  ++G   +  +V  
Sbjct: 268 QFTYSITLDILATEGQLHRLNEV---LDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFC 324

Query: 314 ---------------------------------MDFMQKRFFFPTVVTYNIVIETFGKAG 340
                                            +  M ++     V  YN+V    GK  
Sbjct: 325 RMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLK 384

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +E S    D   +N
Sbjct: 385 QVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYN 444

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      E A +L ++MI+
Sbjct: 445 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMIS 503



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 171/390 (43%), Gaps = 45/390 (11%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A ++F  ++Q+        T+T L+ M GK  +  +    F+ M+S G
Sbjct: 170 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI---LIKSCTKFHRF 201
              ++  +  ++ A G++ ++D+    ++ M   +DC+P+ +TYSI   ++ +  + HR 
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE-NDCQPNQFTYSITLDILATEGQLHRL 287

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------- 250
           + +  I +      I      Y+ ++    K+    E  + F  M  S            
Sbjct: 288 NEVLDICSRFMNRSI------YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSM 341

Query: 251 -----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                                  G   D+   N + SA G    +  +   +++    G+
Sbjct: 342 LEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI 401

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+ T NI+  SYGR G+ DK   + + M+     P VVTYN +I   GK G +++   
Sbjct: 402 IPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHM 461

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            FK+M+ +G  P+  TY  L+  + K+  +    S+  ++ +     +   +N ++    
Sbjct: 462 LFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLE 521

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATM 437
           + G  E+  +L+ TMK++  +PD+IT++ +
Sbjct: 522 RRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 1/197 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+    ++    F
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E+  C PD+ T NS+I+  G  G++++    + E    G   D+ T +IL + +G+
Sbjct: 429 EVM-EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGK 487

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +   +   S+ D M      P +VTYNI+++   + G  E+  + ++ MK +G+ P+SIT
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 547

Query: 364 YCSLVSAYSKAGLIMKV 380
           Y  L    S++   +++
Sbjct: 548 YSILERLESRSQRTVRI 564



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 129 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 188

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 189 MKQK-HCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNK 247

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 333
           M DK+  V+  M +    P   TY+I                                ++
Sbjct: 248 MVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLV 307

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           ++  K+GH  +    F +M +   K +   + S++     A   ++   +L  +    ++
Sbjct: 308 KSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIV 367

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N + SA G+   V  +  LF  MK    +PD  T+  MI +Y  +G+ + A  L
Sbjct: 368 TDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASEL 427



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 11/229 (4%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 271
           G    A +YN I+    + +          A +E  G   +I T+N ++   G       
Sbjct: 55  GFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMER 114

Query: 272 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E   KW       G++    T   + +++ R+    K   V + M+++ +   +  YN
Sbjct: 115 CLELASKW-------GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYN 167

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++++   KAG +++  + F+ MK +   P++ TY  L+    KAG   K  S   ++ + 
Sbjct: 168 MLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK 227

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +L+   FN II A G+   V+K+  +   M E  C P+  T++  + 
Sbjct: 228 GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 276



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 63/131 (48%)

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  +++   ++  + K  + +++M+ +G K +   Y  L+ A +KAG++ +   +   +
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           +    + D   +  +I   G+AG   K    F  M  + CV + I F T+I+A     M 
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 249

Query: 448 EAAQNLENKMI 458
           +    + +KM+
Sbjct: 250 DKVIFVLSKMV 260



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 55/104 (52%)

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++ +  TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V++ 
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            ++F  MK++HCVPD  T+  +I+     G T    +  ++M++
Sbjct: 183 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 226



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++ Y     T++ L+   GK  + E A  LF+ M+S+G  P++  Y  L+    + G  
Sbjct: 467 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 526

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           +EA      MK      PD  TYSIL +  ++  R   I K
Sbjct: 527 EEAHKLYETMKQ-QGLIPDSITYSILERLESRSQRTVRIRK 566


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P V VY A+V+ Y  +G LD A   + DM      +PD YTY+ LI+      R      
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMPV----EPDAYTYNTLIRGLCGRGRTSNALA 187

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L +M   G     VTY  +++   K   +++       M + G C PDI T N +++  
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKG-CAPDIVTYNVVLNGI 246

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G +E   ++       G + +  + NI+ K    A  ++    +M+ M  +   P V
Sbjct: 247 CQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VT+N++I    + G +E   E  ++M   G  PNS++Y  L+ A+ K   I K    +  
Sbjct: 307 VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVEL 366

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +     D   +N +++A  + G+V+   EL   +K++ C P  I++ T+I      G 
Sbjct: 367 MVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGK 426

Query: 447 TEAAQNLENKMIA 459
           T+ A  L ++M +
Sbjct: 427 TKEALELLDEMTS 439



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 154/338 (45%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K    +QA  L + M   G  P +  Y  +++   Q G +++A   + ++
Sbjct: 203 TYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNL 262

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C+P+  +Y+I++K      R++  EK++ EM++ G   + VT+N +I    +   
Sbjct: 263 PSYG-CEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGL 321

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E        M + G C P+  + N ++ A+     I K  ++       G   DI + N
Sbjct: 322 VEPAMEVLEQMPQYG-CTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYN 380

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  R G  D    ++  ++ +   P +++YN VI+   KAG  ++  E   +M  +
Sbjct: 381 TLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSK 440

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+ ITY ++ S   +   I +      +V++  +      +N I+    +  +    
Sbjct: 441 GLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNA 500

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +LF  M    C+P+  T+  +++     G+ + A+ L
Sbjct: 501 IDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEAREL 538


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y++ +KS     +F +IE++  +M   G+E   +TY+TII    K   F++    F  M 
Sbjct: 193 YNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMY 252

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           ++G   PD  T ++++  Y   G +E++   +      G K D  T ++L K +G AG Y
Sbjct: 253 KTG-LMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDY 311

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D +R V+  M+     P +V YN ++E  GKAG        F++M   G+ PN  T  ++
Sbjct: 312 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAV 371

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RH 426
           +  Y KA        + ++++ +   +D   +N +++     G +E+   LF  MK+  H
Sbjct: 372 IKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEH 431

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 471
           C PD+ ++  M+  Y + G  + A  L  +M    I +       LIQC
Sbjct: 432 CKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQC 480



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 164/358 (45%), Gaps = 48/358 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++    KC   ++A   FE M   GL P    ++A++  Y + G ++E  +     
Sbjct: 227 TYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERG 286

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++ +  KPD  T+S+L K   +   +D I  +L EM  LG++ + V YNT+++  GKA K
Sbjct: 287 RA-TGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 345

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                S F  M++S G  P+  TL ++I  YG +       +W                 
Sbjct: 346 PGFARSLFEEMIDS-GIAPNEKTLTAVIKIYGKA-------RW----------------- 380

Query: 296 ILTKSYGRAGMYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
               S     ++ +M+     MDF          + YN ++      G IE+ E  F+ M
Sbjct: 381 ----SKDALELWKRMKENGWPMDF----------ILYNTLLNMCADVGLIEEAETLFRDM 426

Query: 353 KH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           K     KP+S +Y ++++ Y   G + K   +  ++    + L+     C+I   G+A +
Sbjct: 427 KQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAME 486

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
           ++ + ++F    ER   PD+     ++   + + +++ +++ E K++A  + +  KL+
Sbjct: 487 IDDLVKVFDISVERGVKPDDRLCGCLL---SVVSLSQGSKDQE-KVLACLQRANPKLV 540



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 4/304 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L  M G+    +    + + M S G++P++ VY  L+ A G++G    A S   +M
Sbjct: 297 TFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEM 356

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S   P+  T + +IK   K        ++   M   G     + YNT+++       
Sbjct: 357 ID-SGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGL 415

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE E+ F  M +S  C PD ++  +M++ YG+ G ++K  K + E +  G++ ++    
Sbjct: 416 IEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCT 475

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L +  G+A   D +  V D   +R   P       ++     +   +  E+    ++  
Sbjct: 476 CLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQR- 534

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P  + +  L+     +   +K +     + N+ V +  PF NC+I        VE+ 
Sbjct: 535 -ANPKLVAFIQLIVDEETSFETVK-EEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERA 592

Query: 416 GELF 419
            EL 
Sbjct: 593 HELL 596



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-------- 162
           Q     +  L+  +GK  +P  A  LFE M+  G+ P+    TA++  YG++        
Sbjct: 327 QPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALE 386

Query: 163 ---------------------------GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
                                      GL++EA +   DMK    CKPD ++Y+ ++   
Sbjct: 387 LWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIY 446

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
                 D   K+  EMS  GIE + +    +I   GKA + +++   F   VE  G  PD
Sbjct: 447 GSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVER-GVKPD 505

Query: 256 IFTLNSMISAYGNSGNIEKMEK 277
                 ++S    S   +  EK
Sbjct: 506 DRLCGCLLSVVSLSQGSKDQEK 527



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 307 YDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + K     ++++ +   P   + YN+ +++         +EE   +M   G++ ++ITY 
Sbjct: 170 WQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYS 229

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +++S   K  L  K      ++  + ++ D   F+ I+  Y + G VE++  LF   +  
Sbjct: 230 TIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRAT 289

Query: 426 HCVPDNITFATMIQAYNALG 445
              PD ITF+ + + +   G
Sbjct: 290 GWKPDPITFSVLGKMFGEAG 309


>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 734

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 19/281 (6%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+ + GK K  E+A  +   ML  G+ P+V  +T+++ A   +GL+D++F   ++M 
Sbjct: 419 YSTLINVFGKAKMWEEALRVKADMLEAGVTPNVVTWTSIIGACATAGLVDQSFREFDEML 478

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + + C+P+V  Y++L+++C    +FD    +  E    G      +Y+ I +      K 
Sbjct: 479 N-AGCRPNVNCYNMLLQACIMASQFDRAFLLFEEWKTTG---RMRSYSEIFNYSAPLAKT 534

Query: 237 EEM---------ESSFSAMVES----GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
            E+         +S+    ++       C P+I T N M+ A G++   EK+     E  
Sbjct: 535 HELITVIPGSLLQSNLGEKIDEDVRLACCRPNIITYNCMMKACGSAS--EKVRSLMREMR 592

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
            +G+  D+++ +IL  SYG  G  +     ++ M+   F P VV Y  +I+   +AGH+E
Sbjct: 593 ALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLE 652

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           K  +YF KMK  G++PN++TY SL+  +   G + +V   L
Sbjct: 653 KAFDYFSKMKAAGVRPNAVTYNSLLRRHRNYGTLPEVQRAL 693



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 211/471 (44%), Gaps = 54/471 (11%)

Query: 34  SPGPIQELGIQKEAEKDLS--KILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQ 91
           +P  +Q+  +   A++ LS  K  RTEF ++ +E    S  +      PV   +    K 
Sbjct: 202 APNFVQKSTLDLLADELLSLVKAGRTEFCVELVEYLTESGFFVRNLIDPV-SVVSSCAKL 260

Query: 92  KKWQLALKIFGLLRQQQW-YQARCQTFTK----------------------------LMV 122
           +   LA +   LL +  W Y    + F++                            L+ 
Sbjct: 261 RNIDLARRFVELLSRNPWHYNLIIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLID 320

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
             G+ K+P +A+++FE ML+DG +P+  VY ++++     G L E       M+  +   
Sbjct: 321 SCGRHKEPSKATIVFEKMLNDGFEPNRFVYNSIMNV--NVGNLSEVRRYFQHMQG-AGIA 377

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMES 241
            DV +Y+IL+K+     R DL   + A++   G +    V Y+T+I+ +GKAK +EE   
Sbjct: 378 ADVTSYNILLKAYAASGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALR 437

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
             + M+E+G   P++ T  S+I A   +G +++  + ++E    G + ++   N+L ++ 
Sbjct: 438 VKADMLEAG-VTPNVVTWTSIIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQAC 496

Query: 302 GRAGMYDK-------------MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
             A  +D+             MRS  +     +  P   T+ ++    G        E+ 
Sbjct: 497 IMASQFDRAFLLFEEWKTTGRMRSYSEIFN--YSAPLAKTHELITVIPGSLLQSNLGEKI 554

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + ++    +PN ITY  ++ A   A    KV S++R++    ++ D   ++ ++ +YG 
Sbjct: 555 DEDVRLACCRPNIITYNCMMKACGSAS--EKVRSLMREMRALGLVPDVKSWSILLDSYGS 612

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            GDVE   E    MK     PD + + ++IQA    G  E A +  +KM A
Sbjct: 613 KGDVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKA 663



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++++ L+   G     E AS   E M + G KP V  YT+L+ A  Q+G L++AF   + 
Sbjct: 601 KSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSK 660

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
           MK+ +  +P+  TY+ L++    +     +++ LA
Sbjct: 661 MKA-AGVRPNAVTYNSLLRRHRNYGTLPEVQRALA 694


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 3/338 (0%)

Query: 122 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           V+ G CK  +P+ A  L   M    ++  V +Y  ++    +   +D+AF   N M++  
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET-K 279

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
             KPDV+TY+ LI     + R+    ++L++M    I    V +N +ID + K  K  E 
Sbjct: 280 GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           E  +  MV+S  C PD+   N++I  +     +E+  + + E +  G+  +  T   L  
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            + +A   D  + V   M      P ++TYNI+++     G++E     F+ M+ R MK 
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           + +TY +++ A  KAG +     +   +    V  +   +  ++S + + G  E+   LF
Sbjct: 460 DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + MKE   +P++ T+ T+I+A    G   A+  L  +M
Sbjct: 520 VEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 38/313 (12%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           LD+A     DM   S   P +  +S L+ +  K ++FDL+  +  +M  LGI  +  TY+
Sbjct: 56  LDDAIGLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
             I+ + +  +     +    M++ G   P I TLNS+++ + +   I +     ++   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 173

Query: 285 MGVKADIQTLNILTK----------------------------SYG-------RAGMYDK 309
           MG + D  T   L                              +YG       + G  D 
Sbjct: 174 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 233

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
             ++++ M+K      VV YN +I+   K  H++   + F KM+ +G+KP+  TY  L+S
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLIS 293

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCV 428
                G       +L  +   ++  D  FFN +I A+ + G + +  +L+  M K +HC 
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353

Query: 429 PDNITFATMIQAY 441
           PD + + T+I+ +
Sbjct: 354 PDVVAYNTLIKGF 366


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 178/369 (48%), Gaps = 15/369 (4%)

Query: 80  PVLEA----LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QA 133
           P ++A    LD  +K+ ++    K++G +  +    A     T   ++ G C+Q +  +A
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG---ASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             LF+ M+   + P+V +YT L+        + EA S    M++ S   P++YTY+ ++ 
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN-SGMLPNLYTYNTMMD 271

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGG 251
              K        ++  EM   G+  + VT+  +IDG  K    +EM S+   +++  S G
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFG 328

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+IF  N +I  Y  +GN+ +    ++E     +  D+ T +IL K        ++  
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M+K+ F P  VTYN +I+ + K G++EK  E   +M  +G++PN IT+ +L+  Y
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            KAG +     +  ++    ++ D   +  +I  + + G+ ++   L   M+E    P+ 
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508

Query: 432 ITFATMIQA 440
            T + +I  
Sbjct: 509 FTLSCLIDG 517



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 162/368 (44%), Gaps = 8/368 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKL----MVMLGKCKQPEQASL--LFEVMLSDGLKPSV 149
           +A    GL+ +  W   +      +    MV+ G  K+    ++  ++  M++ G  P+V
Sbjct: 134 IAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNV 193

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+    + G   +AF   ++M       P V  Y+ILI+      R    E +  
Sbjct: 194 VTYGTLIDGCCRQGDFLKAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFR 252

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G+  +  TYNT++DGY K    ++    +  M+   G  P++ T   +I     +
Sbjct: 253 TMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLLPNVVTFGILIDGLCKT 311

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +    K+  +    GV  +I   N L   Y +AG   +  S+   ++K    P V TY
Sbjct: 312 DEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTY 371

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           +I+I+       +E+ +   ++MK +G  PN++TY +L+  Y K G + K   +  Q+  
Sbjct: 372 SILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  +   F+ +I  Y +AG +E    L+  M  +  +PD + +  +I  +   G T+ 
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 450 AQNLENKM 457
           A  L  +M
Sbjct: 492 AFRLHKEM 499



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 165/370 (44%), Gaps = 11/370 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           ++ ++   +F +L + +  +     F  L++   +    E+A  ++  M    + P++  
Sbjct: 104 RRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQA 160

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
              ++    + G  D  +    DM +     P+V TY  LI  C +   F    ++  EM
Sbjct: 161 CNMVLDGLVKKGRFDTMWKVYGDMVA-RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               I  + V Y  +I G     +  E ES F  M  SG   P+++T N+M+  Y    +
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGML-PNLYTYNTMMDGYCKIAH 278

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTVVT 328
           ++K  + Y E    G+  ++ T  IL     +    D+M S   F+     F   P +  
Sbjct: 279 VKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFGVVPNIFV 335

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN +I+ + KAG++ +      +++   + P+  TY  L+        + + D +L++++
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
               + +   +N +I  Y + G++EK  E+   M E+   P+ ITF+T+I  Y   G  E
Sbjct: 396 KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 449 AAQNLENKMI 458
           AA  L  +M+
Sbjct: 456 AAMGLYTEMV 465



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 150/336 (44%), Gaps = 3/336 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   +Q  +  A ++F  + +++ +      +T L+  L    +  +A  +F  M + G
Sbjct: 200 IDGCCRQGDFLKAFRLFDEMIEKKIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSG 258

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  Y  ++  Y +   + +A     +M       P+V T+ ILI    K       
Sbjct: 259 MLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG-DGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K L +M+  G+  +   YN +IDGY KA    E  S  S  +E     PD+FT + +I 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE-IEKHEILPDVFTYSILIK 376

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                  +E+ +    E    G   +  T N L   Y + G  +K   V   M ++   P
Sbjct: 377 GLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++T++ +I+ + KAG +E     + +M  +G+ P+ + Y +L+  + K G   +   + 
Sbjct: 437 NIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLH 496

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           ++++ + +  +    +C+I    + G +    +LFL
Sbjct: 497 KEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF---NLMGVKADIQTLNILTKSY 301
           A+V + G  P IF   S+IS Y  +GN+      ++E    NL+   + I       +  
Sbjct: 655 ALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPN 714

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
               ++ +M+  MD +Q     P +VT  + +      G ++  E     ++HRG+  + 
Sbjct: 715 KALQLFRQMQ--MDDVQ-----PDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDL 767

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
               SL++ YSK G I         + N     D  F   ++ A   AG VE+  + F +
Sbjct: 768 CLNNSLINMYSKCGEIGTARRFSLVLPN-----DVTFMG-VLMACSHAGLVEEGKQHFRS 821

Query: 422 MKERHCVPDNIT-FATMIQAYNALG-MTEA 449
           MKE + +   I+ F  M+      G +TEA
Sbjct: 822 MKEDYSLRPRISHFGCMVDLLCRAGLLTEA 851


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 157/359 (43%), Gaps = 40/359 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M   G K  +  Y  L+ A  ++G++D+AF    DMK    C PD YTY+ILI+  
Sbjct: 150 VYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMS 208

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R         EM   G   + + +NTII+  GK K  +++    S MVE+  C P+
Sbjct: 209 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVEN-DCQPN 267

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-- 313
            FT +  +      G + ++ +     ++     +    + L KS  ++G   +  +V  
Sbjct: 268 QFTYSITLDILATEGQLHRLNEV---LDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFC 324

Query: 314 ---------------------------------MDFMQKRFFFPTVVTYNIVIETFGKAG 340
                                            +  M ++     V  YN+V    GK  
Sbjct: 325 RMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLK 384

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +E S    D   +N
Sbjct: 385 QVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYN 444

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      E A +L ++MI+
Sbjct: 445 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMIS 503



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 171/390 (43%), Gaps = 45/390 (11%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A ++F  ++Q+        T+T L+ M GK  +  +    F+ M+S G
Sbjct: 170 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI---LIKSCTKFHRF 201
              ++  +  ++ A G++ ++D+    ++ M   +DC+P+ +TYSI   ++ +  + HR 
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE-NDCQPNQFTYSITLDILATEGQLHRL 287

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------- 250
           + +  I +      I      Y+ ++    K+    E  + F  M  S            
Sbjct: 288 NEVLDICSRFMNRSI------YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSM 341

Query: 251 -----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                                  G   D+   N + SA G    +  +   +++    G+
Sbjct: 342 LEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI 401

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+ T NI+  SYGR G+ DK   + + M+     P VVTYN +I   GK G +++   
Sbjct: 402 IPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHM 461

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            FK+M+ +G  P+  TY  L+  + K+  +    S+  ++ +     +   +N ++    
Sbjct: 462 LFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLE 521

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATM 437
           + G  E+  +L+ TMK++  +PD+IT++ +
Sbjct: 522 RRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 1/197 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+    ++    F
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M E+  C PD+ T NS+I+  G  G++++    + E    G   D+ T +IL + +G+
Sbjct: 429 EVM-EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGK 487

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +   +   S+ D M      P +VTYNI+++   + G  E+  + ++ MK +G+ P+SIT
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 547

Query: 364 YCSLVSAYSKAGLIMKV 380
           Y  L    S++   +++
Sbjct: 548 YSILERLESRSQRTVRI 564



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 129 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 188

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 189 MKQK-HCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNK 247

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 333
           M DK+  V+  M +    P   TY+I                                ++
Sbjct: 248 MVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLV 307

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           ++  K+GH  +    F +M +   K +   + S++     A   ++   +L  +    ++
Sbjct: 308 KSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIV 367

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N + SA G+   V  +  LF  MK    +PD  T+  MI +Y  +G+ + A  L
Sbjct: 368 TDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASEL 427



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 11/229 (4%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 271
           G    A +YN I+    + +          A +E  G   +I T+N ++   G       
Sbjct: 55  GFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEVER 114

Query: 272 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E   KW       G++    T   + +++ R+    K   V + M+++ +   +  YN
Sbjct: 115 CLELASKW-------GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYN 167

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++++   KAG +++  + F+ MK +   P++ TY  L+    KAG   K  S   ++ + 
Sbjct: 168 MLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK 227

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +L+   FN II A G+   V+K+  +   M E  C P+  T++  + 
Sbjct: 228 GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 276



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 3/173 (1%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GV  +I T+N+L    G     ++    ++   K     +  TY  +++   ++  + K 
Sbjct: 91  GVAGNISTINLLVGMGGGGVEVER---CLELASKWGLRLSGYTYKCIVQAHLRSREVSKG 147

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + +++M+ +G K +   Y  L+ A +KAG++ +   +   ++    + D   +  +I  
Sbjct: 148 FQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRM 207

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G+AG   K    F  M  + CV + I F T+I+A     M +    + +KM+
Sbjct: 208 SGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMV 260



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG  + +R V D M++      + T N+++   G    +E+  E   K    G++ +  
Sbjct: 74  RAGPSEALRLVAD-MERDGVAGNISTINLLVGMGGGGVEVERCLELASKW---GLRLSGY 129

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V++  ++F  M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           K++HCVPD  T+  +I+     G T    +  ++M++
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 226



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++ Y     T++ L+   GK  + E A  LF+ M+S+G  P++  Y  L+    + G  
Sbjct: 467 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 526

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           +EA      MK      PD  TYSIL +  ++  R   I K
Sbjct: 527 EEAHKLYETMKQ-QGLIPDSITYSILERLESRSQRTVRIRK 566


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 151/348 (43%), Gaps = 37/348 (10%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+     +  ++  L K KQ + A  L   M  DG+ P V  Y +L+S    SG   +A 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             ++ M    +  PDV+T++ LI +C K  R    E+   EM    ++   VTY+ +I G
Sbjct: 242 RMVSCMTK-REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                + +E E  F  MV S GC PD+ T + +I+ Y  S  +E   K + E        
Sbjct: 301 LCMYSRLDEAEEMFGFMV-SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE-------- 351

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
                                      M +R      VTY I+I+ + +AG +   EE F
Sbjct: 352 ---------------------------MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIF 384

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           ++M   G+ PN ITY  L+      G I K   IL  ++ + +  D   +N II    +A
Sbjct: 385 RRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKA 444

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           G+V    +++ ++  +  +PD  T+ TM+      G+   A  L  KM
Sbjct: 445 GEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +W  A ++   + +++ Y     TF  L+    K  +  +A   +E M+   L P +  Y
Sbjct: 236 RWSDATRMVSCMTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
           + L+        LDEA      M S   C PDV TYSILI    K  + +   K+  EMS
Sbjct: 295 SLLIYGLCMYSRLDEAEEMFGFMVS-KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
             G+  + VTY  +I GY +A K    E  F  MV  G  HP+I T N ++    ++G I
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG-VHPNIITYNVLLHGLCDNGKI 412

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           EK      +    G+ ADI T NI+ +   +AG       +   +  +   P + TY  +
Sbjct: 413 EKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTM 472

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           +    K G   + +  F+KMK  G+ PN
Sbjct: 473 MLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 141/312 (45%), Gaps = 2/312 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           PS+  ++ L+SA  +    D        M+ +     ++ T +IL+    +  +  L   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG-IPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            L +M  LG E S VT+ ++++G+ +  +  +    F  MV  G   P++   N++I   
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGY-KPNVVIYNTIIDGL 196

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             S  ++      N     G+  D+ T N L      +G +     ++  M KR  +P V
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDV 256

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            T+N +I+   K G + + EE++++M  R + P+ +TY  L+        + + + +   
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF 316

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +     D   ++ +I+ Y ++  VE   +LF  M +R  V + +T+  +IQ Y   G 
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376

Query: 447 TEAAQNLENKMI 458
              A+ +  +M+
Sbjct: 377 LNVAEEIFRRMV 388



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 36/277 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  +S L+ + +K  ++D++  +  +M  LGI  +  T N +++ + +  +     S 
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M++ G   P I T  S+++ +     +      +++   MG K              
Sbjct: 139 LGKMIKLGH-EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYK-------------- 183

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
                                P VV YN +I+   K+  ++   +   +M+  G+ P+ +
Sbjct: 184 ---------------------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV 222

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL+S    +G       ++  +   ++  D   FN +I A  + G V +  E +  M
Sbjct: 223 TYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             R   PD +T++ +I         + A+ +   M++
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS 319



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 235 KFEEMESSFSAMVESGGCHP--DIFTLNSMISAYGNSGNIEKMEKW------YNEFNLMG 286
           +F +++ S         C P   I   + ++SA      I KM+K+      + +  ++G
Sbjct: 58  RFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSA------ISKMKKYDVVIYLWEQMQMLG 111

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  ++ T NIL   + R        S +  M K    P++VT+  ++  F +   +    
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F +M   G KPN + Y +++    K+  +     +L ++E   +  D   +N +IS  
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +G       +   M +R   PD  TF  +I A    G    A+    +MI
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 16/367 (4%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEV---MLSD 143
           +K+   Q+ALK+   +R    +     C +  K ++      + EQ +L ++    M S 
Sbjct: 162 VKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALL------ESEQLNLAWDFLKEMKSQ 215

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           GL  +  + +  +S Y   G +D  +  + +MK +   KPDV  Y+I+I S  K      
Sbjct: 216 GLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLG-IKPDVVAYTIVIDSLCKMSLLKE 274

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              IL +M+ +G+   +V+ ++++DGY K  K EE       ++E     P+IF  NS I
Sbjct: 275 ATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMD----VLEVFNLSPNIFVFNSFI 330

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           S     GN+ K  K + +   MG+  D  +   +   Y +          +  M KR   
Sbjct: 331 SKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIR 390

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P+V TY ++I++  K G++E  E  F++M   G+ P+ ++Y +L++ Y K G + K   +
Sbjct: 391 PSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFEL 450

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L  + ++ V  D   +N +I    + G V +  ++   +  R   PD +TF  +I  ++ 
Sbjct: 451 LSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSN 510

Query: 444 LGMTEAA 450
            G  E A
Sbjct: 511 KGNFEEA 517



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 7/319 (2%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  + E+A  + EV     L P++ V+ + +S     G + +A     DM  +    
Sbjct: 300 GYCKVGKSEEAMDVLEVF---NLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMG-LI 355

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD ++Y+ ++    K        K L +M   GI  S  TY  +ID   K    E  E  
Sbjct: 356 PDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYL 415

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M+ + G  PD+ + N++++ YG  G+++K  +  +     GV  D+ T NIL     
Sbjct: 416 FQRMI-TEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLI 474

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G+ ++ + ++D + +R F P VVT+  +I  F   G+ E+    F  M    ++P+ +
Sbjct: 475 KRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVV 534

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T  +L++ Y +   + + + +  ++ ++ +  D   +N +I  +   G+++    L   M
Sbjct: 535 TCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMM 594

Query: 423 KERHCVPDNITFATMIQAY 441
            E   +P+NIT   ++  Y
Sbjct: 595 IEHGIMPNNITHHALVLGY 613



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 40/255 (15%)

Query: 122 VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +++  C +P   E A  LF+ M+++GL P V  Y  L++ YG+ G L +AF  ++ M+S 
Sbjct: 398 LLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRS- 456

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           +   PD+ TY+ILI    K    +  + IL E++  G     VT+  II G+     FEE
Sbjct: 457 AGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEE 516

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               F  M E     PD+ T +++++ Y  +  + +    +++    G+KAD        
Sbjct: 517 AFLLFFYMSEH-HLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKAD-------- 567

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                                      V+ YN +I  F   G+I+        M   G+ 
Sbjct: 568 ---------------------------VILYNSLIHGFCSLGNIDDACHLVSMMIEHGIM 600

Query: 359 PNSITYCSLVSAYSK 373
           PN+IT+ +LV  Y K
Sbjct: 601 PNNITHHALVLGYEK 615



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/304 (19%), Positives = 116/304 (38%), Gaps = 35/304 (11%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y +L+    K +   +  K++ +M +L I       N+++    ++++          M
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEM 212

Query: 247 VESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
              G G +  I +L   IS Y + GNI+   K   E   +G+K D+    I+  S  +  
Sbjct: 213 KSQGLGLNASIISL--FISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMS 270

Query: 306 MYDKMRSV--------------------------------MDFMQKRFFFPTVVTYNIVI 333
           +  +  S+                                MD ++     P +  +N  I
Sbjct: 271 LLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFI 330

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
                 G++ K  + F+ M   G+ P+  +Y ++++ Y K   I      L ++    + 
Sbjct: 331 SKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIR 390

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                +  +I +  + G++E    LF  M     VPD +++ T++  Y   G  + A  L
Sbjct: 391 PSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFEL 450

Query: 454 ENKM 457
            + M
Sbjct: 451 LSMM 454



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 4/177 (2%)

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           M  KA    L++++ + G  G ++    + +   KR    TV  Y +++  + K    + 
Sbjct: 112 MNHKAMDLLLHLISYNSGEEGWHNIFLKIHETHTKRRVLETV--YGMLVNCYVKENMTQV 169

Query: 345 MEEYFKKMKHRGMKPNSITYC-SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
             +   KM+H  + P  I  C SL+ A  ++  +      L+++++  + L+    +  I
Sbjct: 170 ALKLICKMRHLNIFP-LIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFI 228

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           S Y   G+++   +L + MK     PD + +  +I +   + + + A ++  KM  M
Sbjct: 229 SGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQM 285


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 177/383 (46%), Gaps = 40/383 (10%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TFT L+  L    +  +A  L + M+  G +P +  Y  +V+   + G +D A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           + +N M++ +  K +V  ++ +I S  K+   ++   +  EM   GI  + VTYN++I+ 
Sbjct: 244 NLLNKMEA-ARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
                ++ +     S M+E    +P++ T N++I A+   G + + EK + E     +  
Sbjct: 303 LCNYGRWSDASRLLSNMLEKK-INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T N+L   +      D+ + +  FM  +   P + TYN +I  F K   +E   E F
Sbjct: 362 DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF 421

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAG-------------------LIM------------ 378
           ++M  RG+  N++TY +++  + +AG                    IM            
Sbjct: 422 REMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSY 481

Query: 379 -KVDS---ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
            K+D+   I + ++ S++ L+   +N +I    +AG V +  +LF ++  +   PD +T+
Sbjct: 482 GKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTY 538

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
            TMI    +  + + A +L  KM
Sbjct: 539 NTMISGLCSKRLLQEADDLFRKM 561



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 166/369 (44%), Gaps = 38/369 (10%)

Query: 92  KKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           ++ QL+L +  L +  +  Y+    T + L+      K+   A  L + M+  G KP   
Sbjct: 130 RRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTF 189

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            +T L+          EA + ++ M     C+PD+ TY  ++    K    DL   +L +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQPDLVTYGTVVNGLCKRGDIDLALNLLNK 248

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M    I+ + V +NTIID   K +  E     F+ M E+ G  P++ T NS+I+   N G
Sbjct: 249 MEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM-ETKGIRPNVVTYNSLINCLCNYG 307

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
                 +W +   L+         N+L K                        P VVT+N
Sbjct: 308 ------RWSDASRLLS--------NMLEKKIN---------------------PNVVTFN 332

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I+ F K G + + E+  ++M  R + P++ITY  L++ +     + +   + + + + 
Sbjct: 333 ALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           D + +   +N +I+ + +   VE   ELF  M +R  V + +T+ T+IQ +   G  ++A
Sbjct: 393 DCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSA 452

Query: 451 QNLENKMIA 459
           Q +  +M++
Sbjct: 453 QMVFKQMVS 461



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 156/351 (44%), Gaps = 6/351 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +  ++A+ +F  + + +  +    T+  L+  L    +   AS L   ML   
Sbjct: 265 IDSLCKYRHVEVAVDLFTEM-ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKK 323

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P+V  + AL+ A+ + G L EA     +M   S   PD  TY++LI      +R D  
Sbjct: 324 INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS-IDPDTITYNLLINGFCMHNRLDEA 382

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           +++   M       +  TYNT+I+G+ K K+ E+    F  M + G     + T  ++I 
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTV-TYTTIIQ 441

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            +  +G+ +  +  + +     V  DI T +IL       G  D    +  ++QK     
Sbjct: 442 GFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL 501

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +  YN +IE   KAG + +  + F  +    +KP+ +TY +++S      L+ + D + 
Sbjct: 502 NIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLF 558

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
           R+++    + ++  +N +I A  +  D     EL   M+    V D  T +
Sbjct: 559 RKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTIS 609



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 1/245 (0%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S V +N ++    K  KFE +  S    +++ G   D++T +  I+ +     +      
Sbjct: 82  SIVEFNKLLSAVAKMNKFE-LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             +   +G + DI TL+ L   Y  +       +++D M +  + P   T+  +I     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
                +      +M  RG +P+ +TY ++V+   K G I    ++L ++E + +  +   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           FN II +  +   VE   +LF  M+ +   P+ +T+ ++I      G    A  L + M+
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 459 AMKEN 463
             K N
Sbjct: 321 EKKIN 325


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 167/359 (46%), Gaps = 4/359 (1%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR  +    R        ++ G CK     +A  L+  M + G+ P    YT L+  + 
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC 196

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
             G L  AFS +++M  + +  P VY Y+ILI +  K       + +LA M+  GI+   
Sbjct: 197 LLGQLMGAFSLLDEM-ILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGV 255

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTY+T++DGY    + +  +  F AMV+ G  +P++++ N MI+       +++      
Sbjct: 256 VTYSTLMDGYCLVGEVQNAKQIFHAMVQMG-VNPNVYSYNIMINGLCKCKRVDEAMNLLR 314

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E     +  D  T N L     ++G      ++M+ M  R     VVTY  +++   K  
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQ 374

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           +++K    F KMK RG++P   TY +L+    K G +     + + +      +D   + 
Sbjct: 375 NLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 434

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +IS   + G  ++   +   M++  C+P+ +TF  +I++       + A+ L ++MIA
Sbjct: 435 VMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIA 493



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 2/350 (0%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Q +Q    ++  L+  L K  +   A  L  ++     +P+V +Y  ++    +  L++E
Sbjct: 109 QGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNE 168

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A+   ++M +     PD  TY+ LI       +      +L EM    I      YN +I
Sbjct: 169 AYDLYSEMDA-RGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILI 227

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +   K    +E ++  + M + G   P + T ++++  Y   G ++  ++ ++    MGV
Sbjct: 228 NALCKEGNVKEAKNLLAVMTKEG-IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGV 286

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             ++ + NI+     +    D+  +++  M  +   P  VTYN +I+   K+G I     
Sbjct: 287 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 346

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
              +M HRG   + +TY SL+ A  K   + K  ++  +++   +      +  +I    
Sbjct: 347 LMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLC 406

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + G ++   ELF  +  + C  D  T+  MI      GM + A  +++KM
Sbjct: 407 KGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKM 456



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 151/342 (44%), Gaps = 8/342 (2%)

Query: 116 TFTKLMVMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           T T   +M G C + E + SL F + +++ G +     Y  L++   + G   E    + 
Sbjct: 80  TITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG---ETRCAVK 136

Query: 174 DMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
            ++ + D   +P+V  Y+ +I    K    +    + +EM   GI   A+TY T+I G+ 
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC 196

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
              +     S    M+     +P ++  N +I+A    GN+++ +         G+K  +
Sbjct: 197 LLGQLMGAFSLLDEMILKN-INPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGV 255

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T + L   Y   G     + +   M +    P V +YNI+I    K   +++     ++
Sbjct: 256 VTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M H+ M P+++TY SL+    K+G I    +++ ++ +     D   +  ++ A  +  +
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           ++K   LF+ MKER   P   T+  +I      G  + AQ L
Sbjct: 376 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQEL 417



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 149/350 (42%), Gaps = 20/350 (5%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K KQ   A  L + M   G++ +      L++ +   G +  +FS +  + 
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKIL 72

Query: 177 SVSDCKPDVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
            +   +PD  T + L+K  C K        FH     +K++A+    G +   V+Y T++
Sbjct: 73  KLGY-QPDTITLNTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMDHVSYGTLL 122

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           +G  K  +          M+E     P++   N++I        + +    Y+E +  G+
Sbjct: 123 NGLCKIGE-TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D  T   L   +   G      S++D M  +   P V  YNI+I    K G++++ + 
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKN 241

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
               M   G+KP  +TY +L+  Y   G +     I   +    V  +   +N +I+   
Sbjct: 242 LLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLC 301

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +   V++   L   M  ++ VPD +T+ ++I      G   +A NL N+M
Sbjct: 302 KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 351



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 132/283 (46%), Gaps = 5/283 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  ++ ++ S  K  ++     +  +M   GI  + VT N +I+ +       +M  S
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCH---LGQMAFS 64

Query: 243 FSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           FS +  +   G  PD  TLN+++      G ++K   ++++    G + D  +   L   
Sbjct: 65  FSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNG 124

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G       ++  ++ R   P VV YN +I+   K   + +  + + +M  RG+ P+
Sbjct: 125 LCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPD 184

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           +ITY +L+  +   G +M   S+L ++   ++      +N +I+A  + G+V++   L  
Sbjct: 185 AITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLA 244

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            M +    P  +T++T++  Y  +G  + A+ + + M+ M  N
Sbjct: 245 VMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVN 287



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 2/242 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ LM       + + A  +F  M+  G+ P+V  Y  +++   +   +DEA + + +M
Sbjct: 257 TYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREM 316

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               +  PD  TY+ LI    K  R      ++ EM + G     VTY +++D   K + 
Sbjct: 317 LH-KNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  + F  M E G   P ++T  ++I      G ++  ++ +    + G   D+ T  
Sbjct: 376 LDKATALFMKMKERG-IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 434

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++     + GM+D+  ++   M+     P  VT+ I+I +  +    +K E+   +M  +
Sbjct: 435 VMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAK 494

Query: 356 GM 357
           G+
Sbjct: 495 GL 496



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 12/218 (5%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMY 307
           P I   N ++      G++ KM+++    +L       G++A+  TLNIL   +   G  
Sbjct: 8   PPIIEFNKIL------GSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQM 61

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
               SV+  + K  + P  +T N +++     G ++K   +  K+  +G + + ++Y +L
Sbjct: 62  AFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTL 121

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++   K G       +LR +E+     +   +N II    +   V +  +L+  M  R  
Sbjct: 122 LNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
            PD IT+ T+I  +  LG    A +L ++MI    N G
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPG 219



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K +    A  +F +  +++  Q    T+T L+  L K  + + A  LF+ +L  G
Sbjct: 367 LDALCKNQNLDKATALF-MKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 425

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
               V  YT ++S   + G+ DEA +  + M+  + C P+  T+ I+I+S  +    D  
Sbjct: 426 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMED-NGCIPNAVTFEIIIRSLFEKDENDKA 484

Query: 205 EKILAEMSYLGI 216
           EK+L EM   G+
Sbjct: 485 EKLLHEMIAKGL 496


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 114 CQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           C+T    TKLM ++ +  +P++   + + ++  G KPS+  YT L++A       D   S
Sbjct: 69  CRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHS 128

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I+ ++  +  +PD   ++ +I + ++        K   +M   G + +  T+NT+I GY
Sbjct: 129 IISQVEE-NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY 187

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVK 288
           G A + EE +     M +     P++ T N ++ A+ N  NI  M+ W   + ++  G++
Sbjct: 188 GIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNI--MKAWNVVYKMVASGLQ 245

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T N +  +Y + G   +   ++  MQ     P   T  I+I  + K G I++  ++
Sbjct: 246 PDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQF 305

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +MK  G++PN + + SL+  +  A     V+ +L  +E   V  D   F+ I++A+  
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           AG ++K  E+F  M +    PD   ++ + + Y   G  E A+ + N MI
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 166/360 (46%), Gaps = 4/360 (1%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYT 153
           Q A+K F  +++    +    TF  L+   G   +PE++  L E+M  D  ++P++  Y 
Sbjct: 159 QEAMKYFWKMKESG-SKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYN 217

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            LV A+     + +A++ +  M + S  +PD  TY+ +  +  +       E I+ EM  
Sbjct: 218 VLVRAWCNKKNIMKAWNVVYKMVA-SGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             ++ +  T   II GY K  K +E    F   ++  G  P++   NS+I  + ++ + +
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEA-LQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRD 335

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
            + +        GVK D+ T + +  ++  AG  DK R + D M K    P    Y+I+ 
Sbjct: 336 GVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILA 395

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + + +AG  EK EE    M   G  PN + + ++++ +  AG +     I  ++    + 
Sbjct: 396 KGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIA 455

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +   F  +I  YG+A    K  E+   M+E +  P+  T   + +A+ A G+ + A  +
Sbjct: 456 PNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 9/279 (3%)

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPE-QASLLFEVMLSD-GLKPSVDVYTALVSAY 159
           G++ + Q    +    T  +++ G CK+ + + +L F   + D GL+P++ V+ +L+  +
Sbjct: 269 GIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGF 328

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
             +   D     +  M+     KPDV T+S ++ + +     D   +I  +M    I+  
Sbjct: 329 IDAVDRDGVNEVLTLMEEFG-VKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPD 387

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
           A  Y+ +  GY +A + E+ E   +AM++SG  HP++    ++I+ + ++G +E   K +
Sbjct: 388 AHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FHPNVVIFTTIINGWCSAGRMEYAIKIF 446

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            +    G+  +++T   L   YG A    K   V+  M++    P   T  +V E +   
Sbjct: 447 EKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRAT 506

Query: 340 GHIEKMEEYF-----KKMKHRGMKPNSITYCSLVSAYSK 373
           G  ++          ++M H   + + I   SL   Y K
Sbjct: 507 GLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQK 545


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 165/371 (44%), Gaps = 8/371 (2%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K+  L +K  GL+  +  Y      + KL    G  K+  Q   + E+M    + P +  
Sbjct: 260 KELLLDMKKNGLVPNRVTYNNLVYGYCKL----GSLKEAFQ---IVELMKQTNVLPDLCT 312

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L++    +G + E    ++ MKS+   +PDV TY+ LI  C +        K++ +M
Sbjct: 313 YNILINGLCNAGSMREGLELMDAMKSLK-LQPDVVTYNTLIDGCFELGLSLEARKLMEQM 371

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G++ + VT+N  +    K +K E +      +V+  G  PDI T +++I AY   G+
Sbjct: 372 ENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGD 431

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +    +   E    G+K +  TLN +  +  +    D+  ++++   KR F    VTY  
Sbjct: 432 LSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGT 491

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I  F +   +EK  E + +MK   + P   T+ SL+      G          ++  S 
Sbjct: 492 LIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESG 551

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           ++ D   FN II  Y + G VEK  E +    +    PDN T   ++      GMTE A 
Sbjct: 552 LLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKAL 611

Query: 452 NLENKMIAMKE 462
           N  N +I  +E
Sbjct: 612 NFFNTLIEERE 622



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 174/367 (47%), Gaps = 16/367 (4%)

Query: 84  ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASL-----LFE 138
           AL   + + K  +AL+IF   ++    + +    T   +++G  + P   S+     +F+
Sbjct: 137 ALSAYLHEGKPHVALQIF---QKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFD 193

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
            M+  G+  +V  +  LV+ Y   G L++A   +  M S     PD  TY+ ++K+ +K 
Sbjct: 194 DMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKK 253

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
            R   ++++L +M   G+  + VTYN ++ GY K    +E       M ++    PD+ T
Sbjct: 254 GRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT-NVLPDLCT 312

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N +I+   N+G++ +  +  +    + ++ D+ T N L       G+  + R +M+ M+
Sbjct: 313 YNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQME 372

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH----RGMKPNSITYCSLVSAYSKA 374
                   VT+NI ++   K    EK E   +K+K      G  P+ +TY +L+ AY K 
Sbjct: 373 NDGVKANQVTHNISLKWLCKE---EKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKV 429

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G +     ++R++    + ++T   N I+ A  +   +++   L  +  +R  + D +T+
Sbjct: 430 GDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTY 489

Query: 435 ATMIQAY 441
            T+I  +
Sbjct: 490 GTLIMGF 496



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 139/315 (44%), Gaps = 5/315 (1%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDL-- 203
           PS  ++   +SAY   G    A      M  +   KP++ T + L+    ++   F +  
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLK-LKPNLLTCNTLLIGLVRYPSSFSISS 187

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++  +M  +G+  +  T+N +++GY    K E+       MV     +PD  T N+++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            A    G +  +++   +    G+  +  T N L   Y + G   +   +++ M++    
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P + TYNI+I     AG + +  E    MK   ++P+ +TY +L+    + GL ++   +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKL 367

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYN 442
           + Q+EN  V  +    N  +    +    E +      + + H   PD +T+ T+I+AY 
Sbjct: 368 MEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYL 427

Query: 443 ALGMTEAAQNLENKM 457
            +G    A  +  +M
Sbjct: 428 KVGDLSGALEMMREM 442



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 144/329 (43%), Gaps = 41/329 (12%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASL---LFEVMLSDGLKPSVDVY 152
           L+L+   L+ Q +    +    T  + +   CK+ ++ ++   + E++   G  P +  Y
Sbjct: 360 LSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTY 419

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             L+ AY + G L  A   + +M      K +  T + ++ +  K  + D    +L    
Sbjct: 420 HTLIKAYLKVGDLSGALEMMREMGQ-KGIKMNTITLNTILDALCKERKLDEAHNLLNSAH 478

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFE-------EME--------SSFSAMVESGGCH---- 253
             G     VTY T+I G+ + +K E       EM+        S+F++++  G CH    
Sbjct: 479 KRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLI-GGLCHHGKT 537

Query: 254 ----------------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
                           PD  T NS+I  Y   G +EK  ++YNE      K D  T NIL
Sbjct: 538 ELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
                + GM +K  +  + + +     TV TYN +I  F K   +++  +   +M+ +G+
Sbjct: 598 LNGLCKEGMTEKALNFFNTLIEEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGL 656

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +P+  TY S +S   + G + + D +L++
Sbjct: 657 EPDRFTYNSFISLLMEDGKLSETDELLKK 685


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 8/342 (2%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+   E A  L   M+ +G+ P+V  Y+ ++++   SG ++ AF+    M  +  C 
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQM-FLRGCD 311

Query: 183 PDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
            +++T++ LIK C  F R  L E   +   M   G E + V YNT+I G       EE  
Sbjct: 312 ANIHTFTPLIKGC--FMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                M  SG C P++ T + +I  +  SG++    + +N     G + ++ T   +   
Sbjct: 370 QVCDQMQRSG-CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +  M+D+  S+++ M      P  +T+N  I+     G +E   +  ++M+  G  PN
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             TY  L+ A  +     +   + +++E  ++  +   +N ++  + +AG + +  +LF 
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
               R   PD+IT+ TMI AY   G  + A  L  ++ +MKE
Sbjct: 549 KALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 160/360 (44%), Gaps = 16/360 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  + + K+Q+   ++  +++         T+  L+  L K  + + A  LF  M + G
Sbjct: 151 LDALLSENKFQMINPLYTNMKKDGLI-PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG 209

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    YT +VS+  ++G +D+A             KP V  Y+ LI    K  R ++ 
Sbjct: 210 CPPDAVTYTTMVSSLCKAGKIDDARELAGRF------KPSVPVYNALIDGMCKEGRIEVA 263

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K+L EM   G++ + V+Y+ II+    +   E   + F+ M    GC  +I T   +I 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR-GCDANIHTFTPLIK 322

Query: 265 AYGNSGNI-EKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                G + E ++ W     LM   G + ++   N L       G  ++   V D MQ+ 
Sbjct: 323 GCFMRGKLYEALDLW----KLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P V TY+I+I+ F K+G +    E + +M   G +PN +TY  +V    K  +  + 
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +S++ ++       +T  FN  I      G VE   +L   M+   C+P+  T+  ++ A
Sbjct: 439 NSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 168/426 (39%), Gaps = 67/426 (15%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            L  F  +     +Q    T+  ++  LG+  + +    + + M  DG+    D++  ++
Sbjct: 57  VLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICII 116

Query: 157 SAYGQSGLLDEA-------------------------------FSTIN----DMKSVSDC 181
           + Y + G  ++A                               F  IN    +MK     
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK-DGL 175

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            P+V+TY+IL+K+  K  R D   K+  EMS  G    AVTY T++    KA K ++   
Sbjct: 176 IPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE 235

Query: 242 ----------SFSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNI 272
                      ++A+++                     G  P++ + + +I++   SGN+
Sbjct: 236 LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKS-YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           E     + +  L G  A+I T   L K  + R  +Y+ +  +   M +    P VV YN 
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEAL-DLWKLMIQDGCEPNVVAYNT 354

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I      G +E+  +   +M+  G  PN  TY  L+  ++K+G ++       ++ +  
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              +   + C++    +    ++   L   M    C P+ ITF T I+     G  E A 
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAM 474

Query: 452 NLENKM 457
            L  +M
Sbjct: 475 KLLERM 480



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 6/272 (2%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY ++I+   +    D+++ IL +M   GI C    +  II+GY +    E+    F  +
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E G C P +   N ++ A  +    + +   Y      G+  ++ T NIL K+  +   
Sbjct: 136 GEFG-CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR 194

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D    +   M  +   P  VTY  ++ +  KAG I+   E   + K     P+   Y +
Sbjct: 195 VDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNA 249

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    K G I     +L ++ ++ V  +   ++CII++   +G+VE    LF  M  R 
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           C  +  TF  +I+     G    A +L   MI
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMI 341



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 7/189 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF   +  L    + E A  L E M   G  P++  Y  L+ A  +    +EAF    ++
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GK 232
           ++  + +P++ TY+ ++   ++        ++  +    G    ++TYNT+I  Y   GK
Sbjct: 516 EA-RNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGK 574

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            K   ++    S+M E    HPDI T  S+I    N  NIE+   + ++    G+  +  
Sbjct: 575 VKIAAQLVERVSSMKEW---HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFA 631

Query: 293 TLNILTKSY 301
           T N L + +
Sbjct: 632 TWNALVRCF 640



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 3/172 (1%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           R E+A+K +E+        N+      E LD   +  K++ A  +F  +  +   Q    
Sbjct: 469 RVEWAMKLLERMQGHGCLPNI--TTYNELLDALFRMNKYEEAFGLFQEIEARN-LQPNLV 525

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++    +     +A  LF   L  G  P    Y  ++ AY + G +  A   +  +
Sbjct: 526 TYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
            S+ +  PD+ TY+ LI     +   +     L +    GI  +  T+N ++
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +QK+  +A   F   R+Q  ++    T+T ++ +LG+ K  +  + L + M+ +G +P+V
Sbjct: 43  QQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNV 102

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+  YG++  LD +    N M+ V  C+PD  TY  LI    K    D   ++  
Sbjct: 103 VTYNRLIHCYGRANDLDSSLKLFNVMQMVG-CEPDRVTYCTLIDLQAKAGFHDAAMELYR 161

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M + G      TY+ II   GKA K       F  M +  G  P + T N +I  +  +
Sbjct: 162 QMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDR-GYAPSLVTYNIIIDLHAKA 220

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G  +   K Y++   +G   D  T  I+ +  G  G  +    V + M++  +      +
Sbjct: 221 GKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIF 280

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++++ +GK G+ EK  ++F +M   G++PN     SL+SAY ++        +L
Sbjct: 281 GLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVL 335



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 1/276 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K DV+TY+ ++    +   FD++  +L EM   G E + VTYN +I  YG+A   +    
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M +  GC PD  T  ++I     +G  +   + Y +    G + D  T +I+    
Sbjct: 124 LFNVM-QMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCL 182

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG  +    +   M  R + P++VTYNI+I+   KAG  +   + +  ++  G  P+ 
Sbjct: 183 GKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDR 242

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G I   + +  ++E +  + D P F  ++  +G+ G+ EK  + F  
Sbjct: 243 VTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNR 302

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M +    P+     +++ AY      +AA  +   M
Sbjct: 303 MLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGM 338



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 158/359 (44%), Gaps = 12/359 (3%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGK------CKQPEQASLLFEVML----SDG 144
           +L  ++ G+L Q  W     +    L   L         KQ ++A + +   +      G
Sbjct: 3   RLVARVCGILNQHGWGDETVRALAGLNASLNAYQVNEILKQQKEAGVAYNFFIWARKQAG 62

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            K  V  YT ++   G++   D   + +++M     C+P+V TY+ LI    + +  D  
Sbjct: 63  FKHDVHTYTTILGILGRAKSFDVLNNLLDEMIR-EGCEPNVVTYNRLIHCYGRANDLDSS 121

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K+   M  +G E   VTY T+ID   KA  F +        ++  G  PD FT + +I 
Sbjct: 122 LKLFNVMQMVGCEPDRVTYCTLIDLQAKAG-FHDAAMELYRQMQHAGFRPDTFTYSIIIH 180

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
             G +G +    K + E    G    + T NI+   + +AG +D    +   +Q+  + P
Sbjct: 181 CLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP 240

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VTY I++E  G  GHIE  E+ F++M+  G   ++  +  +V  + K G   K     
Sbjct: 241 DRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWF 300

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
            ++ +S +  + P  N ++SAY ++   +  G +   M +    P   T+ +++ +  A
Sbjct: 301 NRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAA 359



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY TI+   G+AK F+ + +    M+  G C P++ T N +I  YG + +++   K +N 
Sbjct: 69  TYTTILGILGRAKSFDVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSSLKLFNV 127

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
             ++G + D  T   L     +AG +D    +   MQ   F P   TY+I+I   GKAG 
Sbjct: 128 MQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGK 187

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPF 398
           +    + F +M  RG  P+ +TY  ++  ++KAG   + +K+ S L++V  +    D   
Sbjct: 188 LNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP---DRVT 244

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  I+   G  G +E   ++F  M+    V DN  F  M+  +   G  E A    N+M+
Sbjct: 245 YGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRML 304


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 160/364 (43%), Gaps = 9/364 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L +K  GL   +  Y      + KL       K  ++A+ + E+M   G+ P V  Y  +
Sbjct: 270 LQMKNSGLFPNRNTYNILVHGYCKL-------KWLKEAAEVIELMTGKGMLPDVWTYNTM 322

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           V      G +DEA    + M+S     PDV TY+ LI  C +    D   K++ EM   G
Sbjct: 323 VRGLCDEGKIDEAVRLRDKMESFK-LVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARG 381

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           ++ + VT+N +I  +    K +E  +    MVESG   PD FT N+MI+ Y  +G + + 
Sbjct: 382 VKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESG-FSPDCFTYNTMINGYCKAGKMAEA 440

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            K  +E    G+K D  TLN L  +       D   ++    +KR +    VTY  +I  
Sbjct: 441 YKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMG 500

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           + K    ++  + +++MK  G+    ITY +++     +G   +    L ++    ++ D
Sbjct: 501 YFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPD 560

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
               N II  Y   G VEK  +    M E    PD  T   +++     GM E    L N
Sbjct: 561 ESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFN 620

Query: 456 KMIA 459
             I+
Sbjct: 621 TWIS 624



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 165/367 (44%), Gaps = 5/367 (1%)

Query: 78  PKPVLE-ALDEAIKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQAS 134
           PKP+L+ +L   +  K+  L  +IF  +++ ++      C T    +V          + 
Sbjct: 137 PKPLLDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSR 196

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            +F+  +  G++P+V+ +  L+  Y      +EA   IN M     C PD  TY+ ++ +
Sbjct: 197 EVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYG-CCPDNVTYNTVLTA 255

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             K  +   +  +L +M   G+  +  TYN ++ GY K K  +E       M    G  P
Sbjct: 256 LCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMT-GKGMLP 314

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D++T N+M+    + G I++  +  ++     +  D+ T N L          D    ++
Sbjct: 315 DVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLV 374

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M+ R      VT+NI+I+ F   G I++      KM   G  P+  TY ++++ Y KA
Sbjct: 375 EEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKA 434

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +   ++ ++    + LDT   N ++        ++    L +  ++R  + D +T+
Sbjct: 435 GKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTY 494

Query: 435 ATMIQAY 441
            T+I  Y
Sbjct: 495 GTLIMGY 501



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 2/295 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++AS +   M+  G  P    Y  +++ Y ++G + EA+  +++M      K D +T + 
Sbjct: 403 DEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGR-KGLKLDTFTLNT 461

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+ +     + D    +  +    G     VTY T+I GY K ++ +     +  M E+G
Sbjct: 462 LLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETG 521

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
                I T N++I     SG  ++     NE    G+  D  T NI+   Y   G  +K 
Sbjct: 522 IV-ATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKA 580

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
               + M +    P + T NI++    + G +EK    F     +G   +++TY  ++S+
Sbjct: 581 FQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISS 640

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           + K   +     ++ ++E  ++  D   +N I++   +AG  E+  +L L   E+
Sbjct: 641 FCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEK 695



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 2/258 (0%)

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFTLN 260
           L  +I  +M  L    + +T NT+++   ++     +  S     ++   G  P++ T N
Sbjct: 156 LGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFN 215

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I  Y +  N E+  +  N+    G   D  T N +  +  +     ++R ++  M+  
Sbjct: 216 ILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNS 275

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
             FP   TYNI++  + K   +++  E  + M  +GM P+  TY ++V      G I + 
Sbjct: 276 GLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEA 335

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +  ++E+  ++ D   +N +I    +    +   +L   MK R    + +T   MI+ 
Sbjct: 336 VRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKW 395

Query: 441 YNALGMTEAAQNLENKMI 458
           +   G  + A N+  KM+
Sbjct: 396 FCTEGKIDEASNVMVKMV 413



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 5/215 (2%)

Query: 254 PDIFTLNSMISAYGNSGNIEKM---EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           P++ T N++++A   S +   +    + + +   +GV+ ++ T NIL   Y      ++ 
Sbjct: 171 PNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEA 230

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +++ M +    P  VTYN V+    K   + ++ +   +MK+ G+ PN  TY  LV  
Sbjct: 231 LRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHG 290

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y K   + +   ++  +    ++ D   +N ++      G +++   L   M+    VPD
Sbjct: 291 YCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPD 350

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIA--MKEN 463
            +T+ T+I        ++AA  L  +M A  +KEN
Sbjct: 351 VVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKEN 385



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM---RSVMD 315
           L++ ++AY  S       + +N+   +  + ++ T N L  +  R+     +   R V  
Sbjct: 141 LDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQ 200

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
              K    P V T+NI+I  +    + E+      +M   G  P+++TY ++++A  K  
Sbjct: 201 DAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRS 260

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + +V  +L Q++NS +  +   +N ++  Y +   +++  E+   M  +  +PD  T+ 
Sbjct: 261 QLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYN 320

Query: 436 TMIQAYNALGMTEAAQNLENKMIAMK 461
           TM++     G  + A  L +KM + K
Sbjct: 321 TMVRGLCDEGKIDEAVRLRDKMESFK 346


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 137/274 (50%), Gaps = 1/274 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V  Y++ +K   K    D  EK+  EM   G++    T++TII         ++    F
Sbjct: 175 EVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWF 234

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M  S G  PD  TL++MI +YG +GN+EK    Y+       + D    + L + Y  
Sbjct: 235 EKM-PSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKV 293

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG +D   +V + M+     P +V YNI+++  G+A    +++++++ +   G+ P+ +T
Sbjct: 294 AGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVT 353

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +L+ AY +A        I R+++   + L+   +N I++     G V+K  E+F  MK
Sbjct: 354 YAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMK 413

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                PD+ TF++MI  ++  G    A+N  N+M
Sbjct: 414 SSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEM 447



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 156/353 (44%), Gaps = 42/353 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ ++     C   ++A   FE M S GL+P     + ++ +YG++G +++A S + D 
Sbjct: 213 TFSTIISCARLCNLADKAVEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALS-LYDR 271

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               + + D   +S LI+       FD    +  EM  LG++ + V YN ++D  G+AK+
Sbjct: 272 ARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKR 331

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +++  +  ++++ G  P   T  +++ AYG +   E   K Y E              
Sbjct: 332 PWQVKKFYQDIIDN-GLSPSFVTYAALLHAYGRARYGEDAFKIYRE-------------- 376

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                                M+++     VV YN ++      GH++K  E F+ MK  
Sbjct: 377 ---------------------MKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSS 415

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP+S T+ S+++ +S  G + + ++ L ++  +    +      +I  YG+A  ++ +
Sbjct: 416 GIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDV 475

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 468
              F  + E    PD+     ++       MT+      +K++   E +  KL
Sbjct: 476 VNTFNRIFELVITPDDRFCGCLLNV-----MTQTPNEELSKLVKCAERANPKL 523


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 9/320 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           +AL  F  L++Q  ++    ++T ++ +LG+ +Q      L + M S   KP+V  Y  +
Sbjct: 348 IALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRI 407

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + AYG++  L EA     +M+  +  +PD  TY  LI    K    ++   +   M  +G
Sbjct: 408 IHAYGRANYLREAVKVFEEMQK-AGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVG 466

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +     TY+ +++  GK          F  MVE+ GC P++ T N MI+    + N E +
Sbjct: 467 LSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVEN-GCTPNLVTYNIMIALQAKARNYENV 525

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIE 334
            K Y +  + G + D  T +I+ +  G  G  D+  +V  F++ R  + P    Y ++++
Sbjct: 526 VKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAV--FIEMRHDWAPDEPVYGLLVD 583

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            +GKAG+++K   ++  M   G++PN  T  SL+SA+ K        S+L+ +    ++ 
Sbjct: 584 LWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVP 643

Query: 395 D----TPFFNCIISAYGQAG 410
                T   +C   A  Q G
Sbjct: 644 SLQTYTLLLSCCTEAQAQMG 663



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 131/278 (47%), Gaps = 2/278 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K D ++Y+ +I    +  +F  + K+L EM+ +  + + VTYN II  YG+A    E   
Sbjct: 363 KHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVK 422

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F  M +  G  PD  T  ++I  +   G +E     Y     +G+  D  T + +    
Sbjct: 423 VFEEM-QKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCL 481

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+ G       +   M +    P +VTYNI+I    KA + E + + +K M+  G +P+ 
Sbjct: 482 GKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDK 541

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY  ++      G + + +++  ++ + D   D P +  ++  +G+AG+V+K    +  
Sbjct: 542 ITYSIVMEVLGHCGHLDEAEAVFIEMRH-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHA 600

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M +    P+  T  +++ A+  +   + A ++   M+A
Sbjct: 601 MLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLA 638



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 88/170 (51%), Gaps = 6/170 (3%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G K D  +   +    G+A  +  MR ++D M      PTVVTYN +I  +G+A ++ + 
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREA 420

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            + F++M+  G +P+ +TYC+L+  ++K G +     +  +++   +  DT  ++ +++ 
Sbjct: 421 VKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNC 480

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
            G+ G +    +LF  M E  C P+ +T+  MI       +   A+N EN
Sbjct: 481 LGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMI------ALQAKARNYEN 524



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 2/244 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +    +Y T+I   G+A++F  M      M  S  C P + T N +I AYG +  + +
Sbjct: 361 GFKHDGHSYTTMIGILGQARQFGTMRKLLDEM-NSVHCKPTVVTYNRIIHAYGRANYLRE 419

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             K + E    G + D  T   L   + + G  +    +   MQ+    P   TY+ ++ 
Sbjct: 420 AVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVN 479

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
             GK GH+    + F +M   G  PN +TY  +++  +KA     V  + + ++ +    
Sbjct: 480 CLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRP 539

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   ++ ++   G  G +++   +F+ M+     PD   +  ++  +   G  + A    
Sbjct: 540 DKITYSIVMEVLGHCGHLDEAEAVFIEMRHD-WAPDEPVYGLLVDLWGKAGNVDKALGWY 598

Query: 455 NKMI 458
           + M+
Sbjct: 599 HAML 602


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 157/360 (43%), Gaps = 42/360 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M   G K  +  Y  L+ A  ++G++D+A+    DMK    C PD YTY+ILI+  
Sbjct: 208 VYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQ-KYCVPDAYTYTILIRMS 266

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  +         EM   G   + + YNT+I+  GK K  +++    S M+ES  C P+
Sbjct: 267 GKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIES-DCQPN 325

Query: 256 IFTLNSMISAYGNSGNIEKME------------------------------------KWY 279
            FT +  +      G + ++                                     + +
Sbjct: 326 QFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMW 385

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           N        A I  L +L  S    G   +   ++  M ++     +  YN+V    GK 
Sbjct: 386 NSHESGDRDAFISMLEVLCNS----GKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKL 441

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +  ++E S    D   +
Sbjct: 442 KQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITY 501

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I+  G+ GD+++   LF  M+E+   PD  T++T+I+ +      + A +L ++MIA
Sbjct: 502 NTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIA 561



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 173/390 (44%), Gaps = 45/390 (11%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A ++F  ++Q+ +      T+T L+ M GK  Q  +    F+ M+S G
Sbjct: 228 LDALAKAGMVDQAYQVFEDMKQK-YCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRG 286

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI---LIKSCTKFHRF 201
              ++  Y  ++ A G++ ++D+    ++ M   SDC+P+ +TYS+   ++ +  + HR 
Sbjct: 287 CALNLIAYNTVIEALGKNKMVDKVIFVLSKMIE-SDCQPNQFTYSLTLDILATEGQLHRL 345

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV---ESG-------- 250
           + +  I     YL    +   Y+ ++    K+    E  + F  M    ESG        
Sbjct: 346 NEVLDICDR--YL----NKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISM 399

Query: 251 -----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                                  G   DI   N + SA G    +  +   +++    G+
Sbjct: 400 LEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGI 459

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+ T NI+  SYGR G+ DK   + + M+     P V+TYN +I   GK G +++   
Sbjct: 460 APDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHI 519

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            FK+M+ +G  P+  TY +L+  + K+  +    S+  ++     I +   +N ++    
Sbjct: 520 LFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLE 579

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATM 437
           + G   +  + + TMK++   PD+IT++ +
Sbjct: 580 RRGKTAEAHKHYETMKQQGLTPDSITYSIL 609



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 2/188 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LGK KQ    S LF+ M + G+ P +  Y  ++S+YG+ GL+D+A     +M++ S CKP
Sbjct: 438 LGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEA-SSCKP 496

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV TY+ LI    K    D    +  EM   G +    TY+T+I+ +GK+ K +   S F
Sbjct: 497 DVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLF 556

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M+ + GC P+I T N ++      G   +  K Y      G+  D  T +IL +   R
Sbjct: 557 DEMI-AEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESR 615

Query: 304 AGMYDKMR 311
           +    ++R
Sbjct: 616 SQRTARIR 623



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 33/306 (10%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 187 YTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFED 246

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 247 MKQK-YCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNK 305

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 333
           M DK+  V+  M +    P   TY++                                ++
Sbjct: 306 MVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSYLV 365

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           ++  K+GH  +    F +M +     +   + S++     +G  ++   +L  +    + 
Sbjct: 366 KSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGID 425

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N + SA G+   V  +  LF  MK     PD  T+  MI +Y  +G+ + A  L
Sbjct: 426 TDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGL 485

Query: 454 ENKMIA 459
             +M A
Sbjct: 486 FEEMEA 491



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 18/227 (7%)

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T   ++ A+  S  + K  + Y E +  G K DI   N+L  +  +AGM D+   V + 
Sbjct: 187 YTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFED 246

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M++++  P   TY I+I   GK G   K   +F +M  RG   N I Y +++ A  K  +
Sbjct: 247 MKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKM 306

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + KV  +L ++  SD   +   ++  +      G + ++ E+ L + +R+   +   ++ 
Sbjct: 307 VDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEV-LDICDRYL--NKSIYSY 363

Query: 437 MIQAYNALGMTEAAQNLENKM------------IAMKE---NSGKKL 468
           ++++    G    A N+  +M            I+M E   NSGK L
Sbjct: 364 LVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTL 410



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 271
           G    A +YN I+    ++K          A +E  G   +I T+N ++   G       
Sbjct: 113 GFRHDAFSYNRILALLFRSKADPGEALRLVAQMERDGVAGNISTVNLLVGMGGGGVEVAR 172

Query: 272 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E  +KW       G++ +  T   + +++ R+    K   V + M ++ +   +  YN
Sbjct: 173 CLELAKKW-------GLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYN 225

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++++   KAG +++  + F+ MK +   P++ TY  L+    K G   K  S   ++ + 
Sbjct: 226 MLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSR 285

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
              L+   +N +I A G+   V+K+  +   M E  C P+  T++
Sbjct: 286 GCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYS 330



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 3/173 (1%)

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           GV  +I T+N+L    G      +    ++  +K        TY  +++   ++  + K 
Sbjct: 149 GVAGNISTVNLLVGMGGGGVEVAR---CLELAKKWGLRLNGYTYKCIVQAHLRSREVSKG 205

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            E +++M  +G K +   Y  L+ A +KAG++ +   +   ++    + D   +  +I  
Sbjct: 206 FEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRM 265

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            G+ G   K    F  M  R C  + I + T+I+A     M +    + +KMI
Sbjct: 266 SGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMI 318



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 56/107 (52%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  G++ N  TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V
Sbjct: 178 KKWGLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMV 237

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           ++  ++F  MK+++CVPD  T+  +I+     G T    +  ++M++
Sbjct: 238 DQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVS 284



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q++ Y     T++ L+   GK  + + A  LF+ M+++G  P++  Y  L+    + G  
Sbjct: 525 QEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKT 584

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
            EA      MK      PD  TYSIL +  ++  R   I K
Sbjct: 585 AEAHKHYETMKQ-QGLTPDSITYSILERLESRSQRTARIRK 624


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 178/400 (44%), Gaps = 48/400 (12%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L    +        Y+   Q + +L       +  ++A  ++  ML  G    +  
Sbjct: 180 KKWGLRFNAYS-------YKCLLQGYLRL-------RDCDKAFGVYLDMLRCGYSLDIFA 225

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  L+ A  +   +D+A+    DMK    C+PD +TY+I+I+   K  + D    +   M
Sbjct: 226 FNMLLDALAKDQKVDKAYKVFEDMKR-RHCEPDTFTYTIMIRMTGKAGKTDESLALFQAM 284

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G   + + YNT+I+   K +  ++    FS MVE+G C P+ FT + +++     G 
Sbjct: 285 LEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENG-CQPNEFTYSVLLNVLVAEGQ 343

Query: 272 IEKME-------KWYNE-----------------------FNLMGV--KADIQTLNILTK 299
           + K++       K+ N+                        N+  V  K D      + +
Sbjct: 344 LNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLE 403

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           S   +G   +   +++   ++      + YN V    G+   +  + + ++KMK  G  P
Sbjct: 404 SLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPP 463

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +  TY  L+S+Y +AG +     I  ++ENS+   D   +N +I+  G+ GDV++    F
Sbjct: 464 DIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRF 523

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             M+E+   PD +T++T+I+ +      E A +L ++MIA
Sbjct: 524 KEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIA 563



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 174/386 (45%), Gaps = 37/386 (9%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K +K   A K+F  ++++   +    T+T ++ M GK  + +++  LF+ ML  G
Sbjct: 230 LDALAKDQKVDKAYKVFEDMKRRHC-EPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKG 288

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
              ++  Y  ++ A  +  + D+A    + M   + C+P+ +TYS+L+       + + +
Sbjct: 289 FTLNLIAYNTMIEALAKGRMADKAVLLFSKMVE-NGCQPNEFTYSVLLNVLVAEGQLNKL 347

Query: 205 EKILAEMS--YLGIECSAVTYNTIIDGYGKAKKFEEM------------ESSFSAMVES- 249
           + I+ EMS  Y+  +  A    T+    G + +   +            + ++ +M+ES 
Sbjct: 348 DNIV-EMSKKYMNKQIYAYFVRTL-SKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESL 405

Query: 250 ------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
                                  D    N++ +A G    +  +   Y +    G   DI
Sbjct: 406 CSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDI 465

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T NIL  SYGRAG  D    + + ++     P V++YN +I   GK G +++    FK+
Sbjct: 466 FTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKE 525

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ +G+ P+ +TY +L+  + K   +    S+  ++       +   +N ++    ++G 
Sbjct: 526 MQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGR 585

Query: 412 VEKMGELFLTMKERHCVPDNITFATM 437
             +  +L+  +K++   PD+IT+A +
Sbjct: 586 TAEAVDLYAKLKQQGLTPDSITYAVL 611



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 120/313 (38%), Gaps = 48/313 (15%)

Query: 182 KPDVYTYSILIKSCTKFH---RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           K D + Y+ L  + ++     RF+  E +L +M   G++ S  T N +I  +G   +   
Sbjct: 118 KNDPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEKRGVKGSISTVNILIGFFGDLDRC-- 175

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                  +V+  G   + ++   ++  Y    + +K    Y +    G   DI   N+L 
Sbjct: 176 -----VGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLL 230

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------------- 341
            +  +    DK   V + M++R   P   TY I+I   GKAG                  
Sbjct: 231 DALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFT 290

Query: 342 ---------IEKMEE---------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
                    IE + +          F KM   G +PN  TY  L++     G + K+D+I
Sbjct: 291 LNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNI 350

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              VE S   ++   +   +    + G   +   LF  M   H   D   + +M+++  +
Sbjct: 351 ---VEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCS 407

Query: 444 LGMTEAAQNLENK 456
            G    A +L N+
Sbjct: 408 SGKIAEAIDLLNR 420


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 167/386 (43%), Gaps = 52/386 (13%)

Query: 116 TFTKLMVMLGKC------KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           T T  +V+ G C       + EQA   F+ M + G++P ++ Y  L+SA   SG + EA 
Sbjct: 137 TGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAH 196

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           +  + M     C PD+ TY++L+    K  +    + ++ E+   G E +  TY+ II+ 
Sbjct: 197 ALFSAMT----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINC 252

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           Y K  K EE    F  M+ES  C P+  T N++I+ +  +G +E   K + E   +G KA
Sbjct: 253 YCKLDKVEEAWEVFMKMIESN-CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKA 311

Query: 290 DIQTLNILTKSYG--RAGMYDKM----------------------------RSVMDFMQK 319
            I T N L  S    R G+Y  +                            R + + MQ 
Sbjct: 312 TIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQ- 370

Query: 320 RFFF--------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
             +F        P V+TY+I+I+   K   +++  +  + MK  G  P  +TY  L++ +
Sbjct: 371 --YFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGF 428

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G +        +++ +    +T  FN +I    +A        L   M    C PD 
Sbjct: 429 CKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDV 488

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
           IT+  +I    +    E AQ L + M
Sbjct: 489 ITYNCLISGLCSANRVEDAQRLFDGM 514



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 18/376 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L   +  +K   AL++F  +     +     T+  L+    K  Q  QA  +F  M S G
Sbjct: 4   LSGLVSARKHDQALRLFKEV-LAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           L P+      L+    + G +  A     +M++     P   +++IL++    F     +
Sbjct: 63  LLPNASTMNTLLLGLCEIGQMSSALKLFREMQA-GPFLPTSASHNILLRG---FFMAGRV 118

Query: 205 EKILAEMSYLGIECSAV---TYNTIIDGYG----KAKKFEEMESSFSAMVESGGCHPDIF 257
              LA +  +    S+V   TYN ++ G       A + E+    F  M ++ G  PD+ 
Sbjct: 119 RDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEM-KASGVEPDLE 177

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + + ++SA  +SG   +M + +  F+ M    DI T N+L   Y + G   + +S+M  +
Sbjct: 178 SYHILLSALSDSG---RMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            K  + P V TY+I+I  + K   +E+  E F KM      PN++T+ +L++ + KAG++
Sbjct: 235 LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGML 294

Query: 378 MKVDSILRQVENSDVILDTPFFNCII-SAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
                +  ++E          +N +I S   + G V    +LF  ++     P  +T+ +
Sbjct: 295 EDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNS 354

Query: 437 MIQAY-NALGMTEAAQ 451
           +IQ + +A  ++EA Q
Sbjct: 355 LIQGFCDARRLSEAMQ 370



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 146/349 (41%), Gaps = 50/349 (14%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    T++ ++    K  + E+A  +F  M+     P+   +  L++ + ++G+L++A 
Sbjct: 239 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 298

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTK-----FHRFDLIEKILAEMSYLGIECSAVTYN 224
               +M+ +  CK  + TY+ LI S  K     +   DL  K+       G+  + VTYN
Sbjct: 299 KLFAEMEKIG-CKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGA----GLTPTIVTYN 353

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
           ++I G+  A++  E    F  M   G C P++ T + +I        +++  K       
Sbjct: 354 SLIQGFCDARRLSEAMQYFDEM--EGKCAPNVITYSILIDGLCKVRRMKEAAK------- 404

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
                                        ++ M+   + PTVVTY  +I  F K G ++ 
Sbjct: 405 ----------------------------TLEDMKAHGYTPTVVTYGGLINGFCKCGELKS 436

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
              +F+KMK  G  PN++ + +L+    KA        +L  +       D   +NC+IS
Sbjct: 437 ALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLIS 496

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
               A  VE    LF  M    C P+  TF  +I+   A    E A+N+
Sbjct: 497 GLCSANRVEDAQRLFDGMA---CAPNVTTFNFLIRGLCAQKKVEEARNI 542



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +A TYN +I G+ K  +  +  S FS M +S G  P+  T+N+++      G +    K 
Sbjct: 31  NAHTYNVLIRGFCKGGQMHQAVSVFSDM-KSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG- 337
           + E           + NIL + +  AG      + +  M+K        TYN+V++    
Sbjct: 90  FREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCW 149

Query: 338 ---KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS---- 390
               A  +E+  E+FK+MK  G++P+  +Y  L+SA S +G + +  ++   +  S    
Sbjct: 150 ENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIM 209

Query: 391 --DVILD--------------------------TPFFNCIISAYGQAGDVEKMGELFLTM 422
             +V++D                             ++ II+ Y +   VE+  E+F+ M
Sbjct: 210 TYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKM 269

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            E +CVP+ +TF T+I  +   GM E A  L  +M
Sbjct: 270 IESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM 304


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 114 CQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           C+T    TKLM ++ +  +P++   + + ++  G KPS+  YT L++A       D   S
Sbjct: 69  CRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHS 128

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I+ ++  +  +PD   ++ +I + ++        K   +M   G + +  T+NT+I GY
Sbjct: 129 IISQVEE-NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY 187

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVK 288
           G A + EE +     M +     P++ T N ++ A+ N  NI  M+ W   + ++  G++
Sbjct: 188 GIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNI--MKAWNVVYKMVASGLQ 245

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T N +  +Y + G   +   ++  MQ     P   T  I+I  + K G I++  ++
Sbjct: 246 PDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQF 305

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +MK  G++PN + + SL+  +  A     V+ +L  +E   V  D   F+ I++A+  
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           AG ++K  E+F  M +    PD   ++ + + Y   G  E A+ + N MI
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 166/360 (46%), Gaps = 4/360 (1%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYT 153
           Q A+K F  +++    +    TF  L+   G   +PE++  L E+M  D  ++P++  Y 
Sbjct: 159 QEAMKYFWKMKESG-SKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYN 217

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            LV A+     + +A++ +  M + S  +PD  TY+ +  +  +       E I+ EM  
Sbjct: 218 VLVRAWCNKKNIMKAWNVVYKMVA-SGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             ++ +  T   II GY K  K +E    F   ++  G  P++   NS+I  + ++ + +
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEA-LQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRD 335

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
            + +        GVK D+ T + +  ++  AG  DK R + D M K    P    Y+I+ 
Sbjct: 336 GVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILA 395

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + + +AG  EK EE    M   G  PN + + ++++ +  AG +     I  ++    + 
Sbjct: 396 KGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIA 455

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +   F  +I  YG+A    K  E+   M+E +  P+  T   + +A+ A G+ + A  +
Sbjct: 456 PNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 9/279 (3%)

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPE-QASLLFEVMLSD-GLKPSVDVYTALVSAY 159
           G++ + Q    +    T  +++ G CK+ + + +L F   + D GL+P++ V+ +L+  +
Sbjct: 269 GIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGF 328

Query: 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219
             +   D     +  M+     KPDV T+S ++ + +     D   +I  +M    I+  
Sbjct: 329 IDAVDRDGVNEVLTLMEEFG-VKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPD 387

Query: 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
           A  Y+ +  GY +A + E+ E   +AM++SG  HP++    ++I+ + ++G +E   K +
Sbjct: 388 AHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FHPNVVIFTTIINGWCSAGRMEYAIKIF 446

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            +    G+  +++T   L   YG A    K   V+  M++    P   T  +V E +   
Sbjct: 447 EKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRAT 506

Query: 340 GHIEKMEEYF-----KKMKHRGMKPNSITYCSLVSAYSK 373
           G  ++          ++M H   + + I   SL   Y K
Sbjct: 507 GLKKEANRILSAVKNEEMTHETDREDKIPVGSLEKHYQK 545


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 151/342 (44%), Gaps = 2/342 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ +LGK K   +A  +F  +     +P+   Y +++    Q G  ++     N+M 
Sbjct: 156 LSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMC 215

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S   C PD  TYS LI +  K +R D   ++  EM   G++ +A  Y T++  Y K  K 
Sbjct: 216 SEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKV 275

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           EE       M  +  C   +FT   +I   G SG +E     Y      G K D+  +N 
Sbjct: 276 EEALGLVKEM-RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNN 334

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHR 355
           L    GR+        + D M+     P VVTYN +I++ F     + +   +F++MK  
Sbjct: 335 LINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKD 394

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S TY  L+  Y K   + K   +L +++          +  +I+  G A   +  
Sbjct: 395 GIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVA 454

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ELF  +KE         +A MI+ +   G    A NL N+M
Sbjct: 455 NELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEM 496



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 153/339 (45%), Gaps = 47/339 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K  + + A  LF+ M  +GL+P+  +YT L+  Y + G ++EA   + +M
Sbjct: 226 TYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEM 285

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C   V+TY+ LI+                                   G GK+ +
Sbjct: 286 RA-RRCLLTVFTYTELIR-----------------------------------GLGKSGR 309

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+   ++  M++  GC PD+  +N++I+  G S ++    K ++E  L+    ++ T N
Sbjct: 310 VEDAYMTYKNMLKD-GCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYN 368

Query: 296 ILTKSYGRA-GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            + KS   A     +  S  + M+K    P+  TY+I+I+ + K   +EK     ++M  
Sbjct: 369 TIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDE 428

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G  P    YCSL++    A      + + ++++ +        +  +I  +G+ G + +
Sbjct: 429 KGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNE 488

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNAL--GMTEAAQ 451
              LF  MK+  C PD       + AYNAL  GM  A +
Sbjct: 489 AINLFNEMKKLGCTPD-------VYAYNALMTGMVRAER 520



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 2/361 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+++F  +++    Q   + +T LM +  K  + E+A  L + M +     +V  YT L+
Sbjct: 243 AIRLFDEMKENGL-QPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELI 301

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
              G+SG +++A+ T  +M     CKPDV   + LI    + +      K+  EM  L  
Sbjct: 302 RGLGKSGRVEDAYMTYKNMLK-DGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNC 360

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             + VTYNTII    +AK      SS+   ++  G  P  FT + +I  Y  +  +EK  
Sbjct: 361 APNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKAL 420

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
               E +  G          L  + G A  YD    +   +++     +   Y ++I+ F
Sbjct: 421 LLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHF 480

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
           GK G + +    F +MK  G  P+   Y +L++   +A  + +  S+ R +E +    D 
Sbjct: 481 GKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDI 540

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
              N I++   + G  +   E+F  MK     PD ++F T++   +  G+ E A  L  +
Sbjct: 541 NSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQE 600

Query: 457 M 457
           M
Sbjct: 601 M 601



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 159/352 (45%), Gaps = 46/352 (13%)

Query: 101 FGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            GL+++ +    RC     T+T+L+  LGK  + E A + ++ ML DG KP V +   L+
Sbjct: 279 LGLVKEMR--ARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLI 336

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDV------------------------------- 185
           +  G+S  L +A    ++MK + +C P+V                               
Sbjct: 337 NILGRSNHLRDAIKLFDEMKLL-NCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDG 395

Query: 186 -----YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
                +TYSILI    K +R +    +L EM   G       Y ++I+  G AK+++   
Sbjct: 396 IVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVAN 455

Query: 241 SSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
             F  + E+ GC    ++ +  MI  +G  G + +    +NE   +G   D+   N L  
Sbjct: 456 ELFQELKENCGCSSARVYAV--MIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMT 513

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
              RA   D+  S+   M++    P + ++NI++    + G  +   E F KMK+  +KP
Sbjct: 514 GMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKP 573

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           + +++ +++   S+AGL  +   +++++ +     D   ++ I+ A G+  D
Sbjct: 574 DVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKVDD 625



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 2/307 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y AL+    +  +  E + TI DM   S C       S +++   K    +    +  ++
Sbjct: 121 YMALIRCLDEHRMFGEVWKTIQDMVKGS-CAMAPAELSEIVRILGKAKMVNRALSVFYQV 179

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                  +A TYN+II    +    E++   ++ M     C PD  T +++ISA+     
Sbjct: 180 KGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNR 239

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +   + ++E    G++   +    L   Y + G  ++   ++  M+ R    TV TY  
Sbjct: 240 DDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTE 299

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I   GK+G +E     +K M   G KP+ +   +L++   ++  +     +  +++  +
Sbjct: 300 LIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLN 359

Query: 392 VILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +   +N II +  +A   + +    F  MK+   VP + T++ +I  Y      E A
Sbjct: 360 CAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKA 419

Query: 451 QNLENKM 457
             L  +M
Sbjct: 420 LLLLEEM 426



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 34/168 (20%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           L+ + +  G+A M ++  SV   ++ R   PT  TYN +I    + GH EK+ E + +M 
Sbjct: 156 LSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEM- 214

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
                      CS V  +                       DT  ++ +ISA+ +    +
Sbjct: 215 -----------CSEVHCFP----------------------DTVTYSALISAFAKLNRDD 241

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
               LF  MKE    P    + T++  Y  +G  E A  L  +M A +
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARR 289


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 2/295 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +QK+  +A   F   R+Q  ++    T+T ++ +LG+ K  +  + L + M+ +G +P+V
Sbjct: 43  QQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNV 102

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+  YG++  LD +    N M+ V  C+PD  TY  LI    K    D    +  
Sbjct: 103 VTYNRLIHCYGRANDLDSSLKLFNVMQMVG-CEPDRVTYCTLIDLQAKAGFHDAAMDLYR 161

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M + G      TY+ II   GKA K       F  M + G   P + T N +I  +  +
Sbjct: 162 QMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYA-PSLVTYNIIIDLHAKA 220

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G  +   K Y++   +G   D  T  I+ +  G  G  +    V + M++  +      +
Sbjct: 221 GKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIF 280

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++++ +GK G+ EK  ++F +M   G++PN     SL+SAY ++        +L
Sbjct: 281 GLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVL 335



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 1/276 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           K DV+TY+ ++    +   FD++  +L EM   G E + VTYN +I  YG+A   +    
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M +  GC PD  T  ++I     +G  +     Y +    G + D  T +I+    
Sbjct: 124 LFNVM-QMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCL 182

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
           G+AG  +    +   M  R + P++VTYNI+I+   KAG  +   + +  ++  G  P+ 
Sbjct: 183 GKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDR 242

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +TY  ++      G I   + +  ++E +  + D P F  ++  +G+ G+ EK  + F  
Sbjct: 243 VTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNR 302

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           M +    P+     +++ AY      +AA  +   M
Sbjct: 303 MLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGM 338



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 157/356 (44%), Gaps = 12/356 (3%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGK------CKQPEQASLLFEVML----SDG 144
           +L  ++ G+L Q  W     +    L   L         KQ ++A + +   +      G
Sbjct: 3   RLVARVCGILNQHGWGDETVRALAGLNANLNAYQVNEILKQQKEAGVAYNFFIWARKQAG 62

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            K  V  YT ++   G++   D   + +++M     C+P+V TY+ LI    + +  D  
Sbjct: 63  FKHDVHTYTTILGILGRAKSFDVLNNLLDEMIR-EGCEPNVVTYNRLIHCYGRANDLDSS 121

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K+   M  +G E   VTY T+ID   KA  F +        ++  G  PD FT + +I 
Sbjct: 122 LKLFNVMQMVGCEPDRVTYCTLIDLQAKAG-FHDAAMDLYRQMQHAGFRPDTFTYSIIIH 180

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
             G +G +    K + E    G    + T NI+   + +AG +D    +   +Q+  + P
Sbjct: 181 CLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP 240

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             VTY I++E  G  GHIE  E+ F++M+  G   ++  +  +V  + K G   K     
Sbjct: 241 DRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWF 300

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            ++ +S +  + P  N ++SAY ++   +  G +   M +    P   T+ +++ +
Sbjct: 301 NRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSS 356



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TY TI+   G+AK F+ + +    M+  G C P++ T N +I  YG + +++   K +N 
Sbjct: 69  TYTTILGILGRAKSFDVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSSLKLFNV 127

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
             ++G + D  T   L     +AG +D    +   MQ   F P   TY+I+I   GKAG 
Sbjct: 128 MQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGK 187

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPF 398
           +    + F +M  RG  P+ +TY  ++  ++KAG   + +K+ S L++V  +    D   
Sbjct: 188 LNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP---DRVT 244

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  I+   G  G +E   ++F  M+    V DN  F  M+  +   G  E A    N+M+
Sbjct: 245 YGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRML 304



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 3/176 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K  K+ +ALK++  L++  +   R  T+  +M +LG C   E A  +FE M   G
Sbjct: 214 IDLHAKAGKFDMALKLYSDLQEVGYAPDRV-TYGIIMEVLGNCGHIEDAEQVFEEMERAG 272

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
                 ++  +V  +G++G  ++A    N M   S  +P+V   + L+ +  +   +D  
Sbjct: 273 WVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLD-SGLQPNVPACNSLLSAYLRSSFYDAA 331

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTL 259
             +L  M+  G+  +  TY +++      +   E ++ F  M  +G   HP + +L
Sbjct: 332 GGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSL 387



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%)

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K  G K +  TY +++    +A     ++++L ++       +   +N +I  YG+A D+
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +   +LF  M+   C PD +T+ T+I      G  +AA +L  +M
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQM 163


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V  Y A+V+ Y  +G LD A   +  M      +PD YTY+ LI+      R D   
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRLVAAMPM----EPDTYTYNTLIRGLCGRGRTDNAL 172

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +L +M   G     VTY  +++   K   +++       M + G C PDI T N +++ 
Sbjct: 173 AVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG-CAPDIVTYNVVVNG 231

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
               G ++   ++       G + +  + NI+ K    A  ++    +M  M ++   P 
Sbjct: 232 ICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPN 291

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VVT+N++I    + G +E   E   ++   G  PNS++Y  ++ A+ K   + +  + + 
Sbjct: 292 VVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + +S    D   +N +++A  + G+V+   EL   +K++ C P  I++ T+I      G
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 411

Query: 446 MTEAAQNLENKMI 458
            TE A  L N+M+
Sbjct: 412 KTEEALELLNEMV 424



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 155/338 (45%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K    +QA  L + M   G  P +  Y  +V+   Q G +D+A   +  +
Sbjct: 189 TYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSL 248

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C+P+  +Y+I++K      R++  EK++AEMS  G   + VT+N +I    + + 
Sbjct: 249 PSYG-CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCR-RG 306

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E        +   GC P+  + N ++ A+     +++   +       G   DI + N
Sbjct: 307 LVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYN 366

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  R G  D    ++  ++ +   P +++YN VI+   KAG  E+  E   +M  +
Sbjct: 367 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTK 426

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+ ITY ++ S   + G I +      +V++  +  +T  +N I+    +       
Sbjct: 427 GLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSA 486

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +LF  M    C+P+  T+  +I+     G+ + A+ +
Sbjct: 487 IDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREM 524



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 159/347 (45%), Gaps = 4/347 (1%)

Query: 115 QTFTKLMVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            T+T   ++ G C +   + A  + + ML  G  P V  YT L+ A  +     +A   +
Sbjct: 151 DTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLL 210

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           ++M+    C PD+ TY++++    +  R D   + L  +   G E + V+YN ++ G   
Sbjct: 211 DEMRD-KGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCT 269

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A+++E+ E   + M   G   P++ T N +IS     G +E   +  ++    G   +  
Sbjct: 270 AERWEDAEKLMAEMSRKGR-PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           + N +  ++ +    D+  + ++ M     +P +V+YN ++    + G ++   E   ++
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K +G  P  I+Y +++   +KAG   +   +L ++    +  D   ++ I S   + G +
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           E+  + F  +++    P+ + +  ++        T +A +L   M++
Sbjct: 449 EEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVS 495



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 8/260 (3%)

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             R DL E I    S  G+E SA      +      KK      +  A      C PD+ 
Sbjct: 67  VRRGDLEEAIRLVESMAGLEPSAAGPCAAL-----IKKLCASGRTAEARRVLASCEPDVM 121

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           + N+M++ Y  +G ++   +       M ++ D  T N L +     G  D   +V+D M
Sbjct: 122 SYNAMVAGYCVTGQLDNARRL---VAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDM 178

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            +R   P VVTY I++E   K    ++  +   +M+ +G  P+ +TY  +V+   + G +
Sbjct: 179 LRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRV 238

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                 L+ + +     +T  +N ++     A   E   +L   M  +   P+ +TF  +
Sbjct: 239 DDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNML 298

Query: 438 IQAYNALGMTEAAQNLENKM 457
           I      G+ E A  + +++
Sbjct: 299 ISFLCRRGLVEPAMEILDQI 318


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 161/337 (47%), Gaps = 6/337 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+ +L    +   A  L + ML  G +P+V  YT L+ A  ++   ++A + +++M
Sbjct: 145 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEM 204

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P++ TY+++I    +  R D   ++L  +   G +   V+Y T++ G   +K+
Sbjct: 205 RA-KGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKR 263

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++++E  F+ M+E   C P+  T + +I  +   G +E+  +   +    G   +    N
Sbjct: 264 WDDVEELFAEMMEK-NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCN 322

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  S  + G  D    +++ M      P  ++Y  V++   +A   +  +E   +M   
Sbjct: 323 IVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRN 382

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN +T+ + +    + GLI +   ++ Q+      +    +N +++ +   G ++  
Sbjct: 383 NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSA 442

Query: 416 GELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQ 451
            ELF +M    C P+ IT+ T++    NA  +  AA+
Sbjct: 443 LELFRSMP---CKPNTITYTTLLTGLCNAERLDGAAE 476



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 163/388 (42%), Gaps = 40/388 (10%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++  Q    T+T L+  + +    EQA  + + M + G  P++  Y  +++   + G +D
Sbjct: 171 RRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 230

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A   +N + S    +PD  +Y+ L+K      R+D +E++ AEM       + VT++ +
Sbjct: 231 DARELLNRLPSYGF-QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDML 289

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I  + +    E        M E  GC  +    N +I++    G ++   K  N+    G
Sbjct: 290 IRFFCRGGMVERAIQVLEQMTEH-GCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYG 348

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------------------- 325
              D  +   + K   RA  +D  + +++ M +    P                      
Sbjct: 349 CNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAI 408

Query: 326 --------------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                         VVTYN ++  F   GHI+   E F+ M     KPN+ITY +L++  
Sbjct: 409 MLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGL 465

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
             A  +     ++ ++   D   +   FN ++S + Q G +E+  EL   M E  C P+ 
Sbjct: 466 CNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNL 525

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T++        +E A  L + +++
Sbjct: 526 ITYNTLLDGITKDCSSEDALELLHGLVS 553



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 7/341 (2%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           TKL+  L +  +   A+ +       G    V  Y  LV+ Y + G LD A   I  M  
Sbjct: 80  TKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPV 139

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                PD YTY+ LI+      R      +L +M   G + + VTY  +++   +   FE
Sbjct: 140 A----PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFE 195

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +  +    M  + GC P+I T N +I+     G ++   +  N     G + D  +   L
Sbjct: 196 QAMAVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTL 254

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K    +  +D +  +   M ++   P  VT++++I  F + G +E+  +  ++M   G 
Sbjct: 255 LKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGC 314

Query: 358 KPNSITYCSLV-SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
             N+ T C++V ++  K G +     +L  + +     DT  +  ++    +A   +   
Sbjct: 315 ATNT-TLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           EL   M   +C P+ +TF T I      G+ E A  L  +M
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 414



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 135/316 (42%), Gaps = 5/316 (1%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           DG  P V + T L+    + G   +A   +   +  S    DV+ Y+ L+    ++   D
Sbjct: 70  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEG-SGSPVDVFAYNTLVAGYCRYGHLD 128

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
              +++  M    +   A TY  +I       +  +  S    M+  G C P++ T   +
Sbjct: 129 AARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG-CQPNVVTYTVL 184

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + A   +   E+     +E    G   +I T N++     R G  D  R +++ +    F
Sbjct: 185 LEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGF 244

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  V+Y  +++    +   + +EE F +M  +   PN +T+  L+  + + G++ +   
Sbjct: 245 QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQ 304

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L Q+       +T   N +I++  + G V+   +L   M    C PD I++ T+++   
Sbjct: 305 VLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLC 364

Query: 443 ALGMTEAAQNLENKMI 458
                + A+ L N+M+
Sbjct: 365 RAERWDDAKELLNEMV 380



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 137/313 (43%), Gaps = 2/313 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P    YT L+      G + +A S ++DM     C+P+V TY++L+++  +   F+  
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR-RGCQPNVVTYTVLLEAMCRNSGFEQA 197

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L EM   G   + VTYN II+G  +  + ++     + +  S G  PD  +  +++ 
Sbjct: 198 MAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRL-PSYGFQPDTVSYTTLLK 256

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               S   + +E+ + E        +  T ++L + + R GM ++   V++ M +     
Sbjct: 257 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCAT 316

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                NIVI +  K G ++   +    M   G  P++I+Y +++    +A        +L
Sbjct: 317 NTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELL 376

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++  ++   +   FN  I    Q G +E+   L   M E  C    +T+  ++  +   
Sbjct: 377 NEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQ 436

Query: 445 GMTEAAQNLENKM 457
           G  ++A  L   M
Sbjct: 437 GHIDSALELFRSM 449



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/397 (19%), Positives = 165/397 (41%), Gaps = 41/397 (10%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K+W    ++F  + ++        TF  L+    +    E+A  + E M   G   +  +
Sbjct: 262 KRWDDVEELFAEMMEKNCMPNE-VTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTL 320

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--------- 202
              ++++  + G +D+AF  +NDM S   C PD  +Y+ ++K   +  R+D         
Sbjct: 321 CNIVINSICKQGRVDDAFKLLNDMGSYG-CNPDTISYTTVLKGLCRAERWDDAKELLNEM 379

Query: 203 -----------------------LIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
                                  LIE+   ++ +MS  G     VTYN +++G+      
Sbjct: 380 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHI 439

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F +M     C P+  T  ++++   N+  ++   +   E        ++ T N+
Sbjct: 440 DSALELFRSM----PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNV 495

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G  ++   +++ M +    P ++TYN +++   K    E   E    +  +G
Sbjct: 496 LVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKG 555

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ IT+ S++   SK   I +   +   V++  +      +N I+    +  +++   
Sbjct: 556 VSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAI 615

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           + F  M    C+P+  T+  +I+     G+ + AQ+L
Sbjct: 616 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDL 652



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 19/297 (6%)

Query: 102 GLLRQQQWYQAR----------CQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R ++W  A+          C     TF   + +L +    EQA +L E M   G   
Sbjct: 362 GLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTV 421

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            V  Y ALV+ +   G +D A      M     CKP+  TY+ L+       R D   ++
Sbjct: 422 GVVTYNALVNGFCVQGHIDSALELFRSMP----CKPNTITYTTLLTGLCNAERLDGAAEL 477

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           +AEM       + VT+N ++  + +    EE       M+E G C P++ T N+++    
Sbjct: 478 VAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG-CTPNLITYNTLLDGIT 536

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              + E   +  +     GV  D+ T + +     +    ++   +   +Q     P  V
Sbjct: 537 KDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAV 596

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            YN ++    K   I+   ++F  M   G  PN  TY  L+   +  GL+ +   +L
Sbjct: 597 VYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLL 653


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 114 CQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           C+T    TKLM ++ +  +P++   + + ++  G KPS+  YT L++A       D   S
Sbjct: 69  CRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHS 128

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I+ ++  +  +PD   ++ +I + ++        K   +M   G + +  T+NT+I GY
Sbjct: 129 IISQVEE-NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY 187

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVK 288
           G A + EE +     M +     P++ T N ++ A+ N  NI  M+ W   + ++  G++
Sbjct: 188 GIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNI--MKAWNVVYKMVASGLQ 245

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D  T N +  +Y + G   +   ++  MQ     P   T  I+I  + K G I++  ++
Sbjct: 246 PDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQF 305

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +MK  G++PN + + SL+  +  A     V+ +L  +E   V  D   F+ I++A+  
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           AG ++K  E+F  M +    PD   ++ + + Y   G  E A+ + N MI
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 166/360 (46%), Gaps = 4/360 (1%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYT 153
           Q A+K F  +++    +    TF  L+   G   +PE++  L Z+M  D  ++P++  Y 
Sbjct: 159 QEAMKYFWKMKESG-SKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYN 217

Query: 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
            LV A+     + +A++ +  M + S  +PD  TY+ +  +  +       E I+ EM  
Sbjct: 218 VLVRAWCNKXNIMKAWNVVYKMVA-SGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             ++ +  T   II GY K  K +E    F   ++  G  P++   NS+I  + ++ + +
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEA-LQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRD 335

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
            + +        GVK D+ T + +  ++  AG  DK R + D M K    P    Y+I+ 
Sbjct: 336 GVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILA 395

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + + +AG  EK EE    M   G  PN + + ++++ +  AG +     I  ++    + 
Sbjct: 396 KGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIA 455

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +   F  +I  YG+A    K  E+   M+E +  P+  T   + +A+ A G+ + A  +
Sbjct: 456 PNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRI 515


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 181/388 (46%), Gaps = 15/388 (3%)

Query: 74  KNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQA 133
           K+L PK VL+ L     +K  + A  +F    +   Y      +  ++  L + +     
Sbjct: 6   KSLSPKHVLKLLKS---EKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHV 62

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
           S + E++ S   K   DV  +++  YG++ + D+A      M+ +  C+P + +Y+ L+ 
Sbjct: 63  SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLN 122

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
           +  +  ++  +E + A     G+  +  TYN +I    K K+FE+       M +  G  
Sbjct: 123 AFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKE-GFK 181

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD+F+ +++I+    +G ++   + ++E +  GV  D+   NIL   + +   +     +
Sbjct: 182 PDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMEL 241

Query: 314 MD-FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
            D  ++    +P V T+NI+I    K G ++   + +++MK    + +  TY SL+    
Sbjct: 242 WDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLC 301

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
            AG + K +S+  +++     +D   +N ++  + + G +++  EL+  M+ ++ V    
Sbjct: 302 DAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVN--- 358

Query: 433 TFATMIQAYNAL--GMTEAAQNLENKMI 458
                I +YN L  G+ E  +  E  MI
Sbjct: 359 -----IVSYNILIKGLLENGKIDEATMI 381



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 153/361 (42%), Gaps = 2/361 (0%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F  +R+    +   +++  L+    + KQ  +   LF    + G+ P++  Y  L+
Sbjct: 97  ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLI 156

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               +    ++A   ++ M      KPDV++YS +I    K  + D   ++  EMS  G+
Sbjct: 157 KMSCKKKEFEKARGFLDWMWK-EGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGV 215

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
                 YN +IDG+ K K  +     +  ++E    +P++ T N MIS     G ++   
Sbjct: 216 APDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCL 275

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           K +        + D+ T + L      AG  DK  SV + + +R     VVTYN ++  F
Sbjct: 276 KIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGF 335

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            + G I++  E ++ M+H+    N ++Y  L+    + G I +   I R +       D 
Sbjct: 336 CRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADK 394

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +   I      G V K   +   ++      D   +A++I         E A NL  +
Sbjct: 395 TTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKE 454

Query: 457 M 457
           M
Sbjct: 455 M 455



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 162/413 (39%), Gaps = 42/413 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D  +K+K  + A++++  L +        +T   ++  L KC + +    ++E M  + 
Sbjct: 226 IDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNE 285

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS---CTKFHRF 201
            +  +  Y++L+     +G +D+A S  N++        DV TY+ ++     C K    
Sbjct: 286 REKDLYTYSSLIHGLCDAGNVDKAESVFNELDE-RKASIDVVTYNTMLGGFCRCGKIKES 344

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM--------------- 246
             + +I+   + + I    V+YN +I G  +  K +E    +  M               
Sbjct: 345 LELWRIMEHKNSVNI----VSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIF 400

Query: 247 -------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                              VES G H D++   S+I        +E+      E +  GV
Sbjct: 401 IHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGV 460

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + +    N L     R     +    +  M K    PTVV+YNI+I    KAG   +   
Sbjct: 461 ELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASA 520

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
           + K+M   G KP+  TY  L+    +   I     +  Q   S +  D    N +I    
Sbjct: 521 FVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLC 580

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             G ++    +   M+ R+C  + +T+ T+++ +  +G +  A  +   M  M
Sbjct: 581 SVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKM 633



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 37/269 (13%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A++++ +M + G       Y   +     +G +++A   + +++S S    DVY Y+ 
Sbjct: 376 DEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVES-SGGHLDVYAYAS 434

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIE-----CSA------------------------- 220
           +I    K  R +    ++ EMS  G+E     C+A                         
Sbjct: 435 IIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNG 494

Query: 221 -----VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
                V+YN +I G  KA KF E  +    M+E+G   PD+ T + ++        I+  
Sbjct: 495 CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGW-KPDLKTYSILLCGLCRDRKIDLA 553

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + +++F   G++ D+   NIL       G  D   +VM  M+ R     +VTYN ++E 
Sbjct: 554 LELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEG 613

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           F K G   +    +  M   G++P+ I+Y
Sbjct: 614 FFKVGDSNRATVIWGYMYKMGLQPDIISY 642



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 111/255 (43%), Gaps = 2/255 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  ++  L K K+ E+AS L + M   G++ +  V  AL+    +   L EA   + +M
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C+P V +Y+ILI    K  +F      + EM   G +    TY+ ++ G  + +K
Sbjct: 491 GK-NGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRK 549

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     +   ++SG    D+   N +I    + G ++               A++ T N
Sbjct: 550 IDLALELWHQFLQSG-LETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYN 608

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + + + G  ++   +  +M K    P +++YN +++       +    E+F   ++ 
Sbjct: 609 TLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNH 668

Query: 356 GMKPNSITYCSLVSA 370
           G+ P   T+  LV A
Sbjct: 669 GIFPTVYTWNILVRA 683


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 166/377 (44%), Gaps = 8/377 (2%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+K+   AL I   +R     +    T+  L+  L K  +P++A  LFE M S    PS+
Sbjct: 91  KEKRLDQALAILHEMRDHGC-EPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSM 149

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDM-----KSVSD-CKPDVYTYSILIKSCTKFHRFDL 203
             Y  L+    ++G L+ A +   +M       + D C P+V TYS+LI    K +R   
Sbjct: 150 VTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQ 209

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++L  M   G     +TY  ++DG  K  K          M+++G C P++ T NS++
Sbjct: 210 AVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG-CVPNLVTYNSLL 268

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                +  +        +    G   ++ T   L     + G      +++  M  +   
Sbjct: 269 HGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT 328

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P ++ YN++I    KA  +++     ++    G+KP+ +TY S++    ++  + +   +
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L  V++     D   ++ +I    +AG V++  +L+  M    C  D +T++T+I     
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448

Query: 444 LGMTEAAQNLENKMIAM 460
            G  + A  L  +M+ M
Sbjct: 449 AGRVDEAHLLLARMVRM 465



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 179/405 (44%), Gaps = 18/405 (4%)

Query: 42  GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIF 101
           G+ K  E D ++ L     +K++E   S   Y  L        LD   +  K + A+ +F
Sbjct: 123 GLCKNNEPDRAQELFEH--MKSVECSPSMVTYNTL--------LDGLFRTGKLERAMALF 172

Query: 102 G--LLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
              L R+      RC     T++ L+  L K  +  QA  L E M + G  P V  YT L
Sbjct: 173 QEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTIL 232

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           V    +   +  A+  + +M     C P++ TY+ L+    +  R      ++ +M+  G
Sbjct: 233 VDGLCKESKVAAAWEVLREMLDAG-CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG 291

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              + VTY T+IDG  K  + ++  +  + M++ GG  PD+   N +I+    +  +++ 
Sbjct: 292 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCKADQVDES 350

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                     G+K D+ T + +     R+   D+   ++ +++ R   P V+ Y+ +I+ 
Sbjct: 351 IALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDG 410

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             KAG +++  + ++ M   G   + +TY +L+    KAG + +   +L ++        
Sbjct: 411 LCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPS 470

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           T  +N +I        +++  EL   M+  +C P  +T+  +I  
Sbjct: 471 TMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHG 515



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 177/406 (43%), Gaps = 12/406 (2%)

Query: 61  IKNIEKKVSSKKYKNLWPKPVLEAL--DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           I   ++     + KNL P   L ++  D   K K+   AL+ F  + Q     A    +T
Sbjct: 25  IDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAM-QGSGIVADTVIYT 83

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
            L+  L K K+ +QA  +   M   G +P+V  Y +L+    ++   D A      MKSV
Sbjct: 84  ALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSV 143

Query: 179 SDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSY-LGIECS--AVTYNTIIDGYG 231
            +C P + TY+ L+    +  + +    L +++L   S+ +   CS   +TY+ +IDG  
Sbjct: 144 -ECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLC 202

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           KA +  +      +M ++ GC PD+ T   ++        +    +   E    G   ++
Sbjct: 203 KANRVSQAVELLESM-KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 261

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L     RA       ++M  M  R   P VVTY  +I+   K G ++        
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M  +G  P+ + Y  L++   KA  + +  ++LR+  +  +  D   ++ +I    ++  
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 381

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +++   L L +K R C PD I ++T+I      G  + A +L   M
Sbjct: 382 LDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 427



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 9/320 (2%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V  Y AL+  + + G +D+A    ++M+S  +  P+V+  SILI    K  R     
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRS-KNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +    M   GI    V Y  ++ G  K K+ ++  +    M +  GC P++ T NS+I  
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDH-GCEPNVVTYNSLIDG 123

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-- 323
              +   ++ ++ +     +     + T N L     R G  ++  ++   M  R     
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183

Query: 324 -----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P V+TY+++I+   KA  + +  E  + MK RG  P+ ITY  LV    K   + 
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               +LR++ ++  + +   +N ++    +A  V     L   M  R C P+ +T+ T+I
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 303

Query: 439 QAYNALGMTEAAQNLENKMI 458
                +G  + A  +   MI
Sbjct: 304 DGLCKVGRVKDACAMLADMI 323



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 152/333 (45%), Gaps = 13/333 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L + ++   A  L   M   G  P+V  Y  L+    + G + +A + + DM
Sbjct: 263 TYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADM 322

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD+  Y++LI    K  + D    +L      GI+   VTY+++I G  ++ +
Sbjct: 323 IDKGG-TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 381

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E        V+S GC PD+   +++I     +G +++    Y      G  AD+ T +
Sbjct: 382 LDE-ACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYS 440

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +AG  D+   ++  M +    P+ +TYN +I+      H+++  E  ++M+  
Sbjct: 441 TLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS 500

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSIL--------RQVENSDVILDTPFFNCIISAYG 407
              P+++TY  L+    +   + +VDS +        R V      LDT  ++ +I    
Sbjct: 501 NCAPSAVTYNILIHGMCR---MERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLC 557

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +AG V +  + F  M +   +PD+IT++ +++ 
Sbjct: 558 KAGRVAEALDYFQEMIDNGVIPDHITYSILLEG 590



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 150/349 (42%), Gaps = 9/349 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLS-------DGLKPSVDVYTALVSAYGQSGLLDEA 168
           T+  L+  L +  + E+A  LF+ ML        D   P+V  Y+ L+    ++  + +A
Sbjct: 151 TYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQA 210

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              +  MK+   C PDV TY+IL+    K  +     ++L EM   G   + VTYN+++ 
Sbjct: 211 VELLESMKA-RGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLH 269

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G  +A++  +  +    M    GC P++ T  ++I      G ++       +    G  
Sbjct: 270 GLCRARRVSDALALMRDMT-CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT 328

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+   N+L     +A   D+  +++         P VVTY+ VI    ++  +++    
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
              +K RG  P+ I Y +L+    KAG + +   +   +       D   ++ +I    +
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           AG V++   L   M      P  +T+ ++I+    L   + A  L  +M
Sbjct: 449 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 497



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 142/311 (45%), Gaps = 9/311 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + + A  +   M+  G  P + +Y  L++   ++  +DE+ + +   
Sbjct: 298 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLR-- 355

Query: 176 KSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           ++VS   KPDV TYS +I    + +R D   ++L  +   G     + Y+T+IDG  KA 
Sbjct: 356 RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAG 415

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +E    +  M    GC  D+ T +++I     +G +++          MG      T 
Sbjct: 416 KVDEAFDLYEVMA-GDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTY 474

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L K        D+   +++ M++    P+ VTYNI+I    +   ++      ++ K 
Sbjct: 475 NSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKA 534

Query: 355 R-----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           R     G   ++I Y SL+    KAG + +     +++ ++ VI D   ++ ++    ++
Sbjct: 535 RCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKS 594

Query: 410 GDVEKMGELFL 420
            D+ ++  L L
Sbjct: 595 KDLHELRHLVL 605


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 29/337 (8%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--------------DVYTY 188
           D   PS +  + ++   G   +  +A   IN+M S S   P              +V  Y
Sbjct: 107 DSCNPSQEDVSLVLKDLGDRVIEQDAVIVINNM-SNSRVVPFVLNYFQRRIRPTREVILY 165

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKFEEMESS 242
           ++ +K   K    D +EK+  EM   G+    VT++TII          KA ++ E  SS
Sbjct: 166 NVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKMSS 225

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F       GC PD  T ++MI AYG +GNI+   + Y+       + D  T + L K YG
Sbjct: 226 F-------GCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYG 278

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            AG YD   +V   M+     P +V YN +++  G+A    + +  + +M + G  PN +
Sbjct: 279 LAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWV 338

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SL+ AY +         + ++++   + ++T  +N +++     G   +  E+F  M
Sbjct: 339 TYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDM 398

Query: 423 K-ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           K    C+ D+ TF+++I  Y+  G    A+ + N+MI
Sbjct: 399 KTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMI 435



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 4/304 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ ++     C  P +A   FE M S G +P    Y+A++ AYG++G +D A   + D 
Sbjct: 199 TFSTIISCARICSLPNKAVEWFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALR-LYDR 257

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                 + D  T+S LIK       +D    +  EM  LG++ + V YNT++D  G+AK+
Sbjct: 258 ARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKR 317

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             + +S ++ M  + G  P+  T  S++ AYG     E     Y E    G++ +    N
Sbjct: 318 PWQAKSIYTEMT-NNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYN 376

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            L       G+ ++   + + M+          T++ +I  +   G++ + E    +M  
Sbjct: 377 TLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIE 436

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +P      SLV  Y K G    V     Q+ +  +  D  F  C+++   Q    E+
Sbjct: 437 SGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGCLLNVMTQTPK-EE 495

Query: 415 MGEL 418
           +G+L
Sbjct: 496 LGKL 499



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
            +AL+++   R ++W +    TF+ L+ M G     +    +++ M   G+KP++ +Y  
Sbjct: 249 DMALRLYDRARTEKW-RLDTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNT 307

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L+ A G++    +A S   +M + +   P+  TY+ L+++  +    +    +  EM   
Sbjct: 308 LLDAMGRAKRPWQAKSIYTEMTN-NGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEK 366

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G+E +   YNT++          E    F  M  S  C  D +T +S+I+ Y  +GN+ +
Sbjct: 367 GMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSE 426

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            E+  NE    G +  I  L  L + YG+ G  D +
Sbjct: 427 AERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDV 462


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 179/401 (44%), Gaps = 16/401 (3%)

Query: 62  KNIEKKVSSKKYK-NLWPKPVLE--ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFT 118
           K +++ +S+ K+  N+W + + E   L+EA+   +           R   +      T+ 
Sbjct: 236 KVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVE-----------RMGAYVAPDVVTYN 284

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
            LM  L K  + ++A+     M++ G  P    Y  ++  Y +SG+L EA   + D    
Sbjct: 285 TLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKD-AVF 343

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               PD  TY  LI         +   ++  E     ++   V YN+++ G  +      
Sbjct: 344 KGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILH 403

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                + MVE G CHPDI+T N +I+     GNI       N+  + G   D+ T N L 
Sbjct: 404 ALQVMNEMVEEG-CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLI 462

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
             Y +    D    +++ M      P V+TYN V+    KAG  +++ E F++M  +G +
Sbjct: 463 DGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCR 522

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN+ITY  L+  + K   + +   ++ ++    ++ D   FN +I  + + GD++    L
Sbjct: 523 PNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLL 582

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           F  + E+       TF  +I AY++    + A+ +  +MI+
Sbjct: 583 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 623



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 5/318 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A  LF    +  LKP + VY +LV    + GL+  A   +N+M     C PD++TY+I
Sbjct: 367 ERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVE-EGCHPDIWTYNI 425

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    K         ++ +    G      T+NT+IDGY K  K +        M  + 
Sbjct: 426 IINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM-WTY 484

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD+ T NS+++    +G  +++ + + E  L G + +  T NIL +++ +    ++ 
Sbjct: 485 GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEA 544

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+  M +    P  V++N +I  F + G ++     F+K+  +G    + T+  L+ A
Sbjct: 545 SGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 604

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           YS    +   + I  ++ +     D   +  ++    +A +V++       M  +  VP 
Sbjct: 605 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPS 664

Query: 431 NITFATMIQAYNALGMTE 448
             TF  M+   N L M  
Sbjct: 665 MATFGRML---NLLAMNH 679



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 163/384 (42%), Gaps = 29/384 (7%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           L+ +D A+   +  LA         Q  Y A  Q + +     G+ +    A   FE M 
Sbjct: 51  LDDVDAALASARSHLAPDSL-----QPLYVASIQAYARA----GRLRAAVDA---FERMD 98

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
                P+   Y A++ A   +   D+A      M + +   PD  T+++ +KS     R 
Sbjct: 99  LFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLA-AGVAPDARTHTVRLKSFCLTGRP 157

Query: 202 DLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKKFEEMESSFSAMVESGGCHP 254
            +  ++L  +S  G +     Y T++        GY     F+EM              P
Sbjct: 158 HVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGR--------DVFP 209

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
           D+ T N+++ A    G++ +      +    G+ A+  T NI  +     G  ++  +++
Sbjct: 210 DVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALV 269

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           + M   +  P VVTYN ++    K   +++  +Y  +M ++G  P+  TY +++  Y K+
Sbjct: 270 ERMGA-YVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS 328

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G++ +   +L+       + D   +  +I+     GD+E+  ELF   + +   PD + +
Sbjct: 329 GMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVY 388

Query: 435 ATMIQAYNALGMTEAAQNLENKMI 458
            ++++     G+   A  + N+M+
Sbjct: 389 NSLVKGLCRQGLILHALQVMNEMV 412



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 4/253 (1%)

Query: 125 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+Q     A  +   M+ +G  P +  Y  +++   + G + +A   +ND   V    
Sbjct: 394 GLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMND-AIVKGYL 452

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV+T++ LI    K  + D   +++  M   GI    +TYN++++G  KA K +E+  +
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNET 512

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M+  G C P+  T N +I  +     +E+           G+  D  + N L   + 
Sbjct: 513 FEEMILKG-CRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFC 571

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G  D    +   + ++ +  T  T+NI+I  +    +++  E+ F +M  +G KP+  
Sbjct: 572 RNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLY 631

Query: 363 TYCSLVSAYSKAG 375
           TY  LV    KA 
Sbjct: 632 TYRILVDGLCKAA 644



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 6/251 (2%)

Query: 115 QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             FT   ++ G CK+   + A  L E M + G+ P V  Y ++++   ++G   E   T 
Sbjct: 454 DVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETF 513

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            +M  +  C+P+  TY+ILI++  K ++ +    ++  M   G+   AV++NT+I G+ +
Sbjct: 514 EEM-ILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCR 572

Query: 233 AKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
               +     F  + E G     D F  N +I AY +  N++  EK + E    G K D+
Sbjct: 573 NGDLDGAYLLFQKLDEKGYSATADTF--NILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 630

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T  IL     +A   D+  + +  M  + F P++ T+  ++        + +       
Sbjct: 631 YTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHI 690

Query: 352 MKHRGMKPNSI 362
           M   G+ P  +
Sbjct: 691 MVRMGVVPEVV 701


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 154/357 (43%), Gaps = 27/357 (7%)

Query: 127 CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+   E A  LF  M   G  P +  Y +L+  +G+ GLLDE       MK  +DC PD
Sbjct: 67  CKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD-ADCDPD 125

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ LI    KF R     + L EM   G++ + VTY+T ID + K    +E    F 
Sbjct: 126 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 185

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M       P+ FT  S+I A   +GN+ +  K   E    G+K ++ T   L       
Sbjct: 186 DM-RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 244

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G   +   V   M      P   TY  ++  F KA  +E  ++  K+MK + +KP+ + Y
Sbjct: 245 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 304

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDV--------- 412
            +++        + +   ++ +++ S +  +   +  ++ AY   GQA +          
Sbjct: 305 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364

Query: 413 -----------EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                      E   +LF  M ++  +PD I +  +I      G  + A NL ++MI
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMI 421



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 7/278 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P   + + L+   +K  R DL  K   +M   GI+ S  TYN +ID   K    E   S 
Sbjct: 19  PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 78

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+ M E+G   PDI T NS+I  +G  G +++    + +        D+ T N L   + 
Sbjct: 79  FTQMKEAG-FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC 137

Query: 303 RAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           +   +++M    +F   M+     P VVTY+  I+ F K G +++  ++F  M+   + P
Sbjct: 138 K---FERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTP 194

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N  TY SL+ A  KAG + +   ++ ++  + + L+   +  ++    + G +++  E+F
Sbjct: 195 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 254

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             M      P+  T+  ++  +      E A+++  +M
Sbjct: 255 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 169/378 (44%), Gaps = 29/378 (7%)

Query: 107 QQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           +Q   A C     T+  L+    K ++  +A      M ++GLKP+V  Y+  + A+ + 
Sbjct: 115 EQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKE 174

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
           G+L EA     DM+ V+   P+ +TY+ LI +  K        K++ E+   GI+ + VT
Sbjct: 175 GMLQEAIKFFVDMRRVA-LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVT 233

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y  ++DG  +  + +E E  F AM+ + G  P+  T  +++  +  +  +E  +    E 
Sbjct: 234 YTALLDGLCEEGRMKEAEEVFRAML-NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH- 341
               +K D+     +          ++ + ++  +++       V Y  +++ + K+G  
Sbjct: 293 KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 352

Query: 342 ------IEKM----------------EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                 +E+M                ++ F +M  +GM P+ I Y +L+    K G + +
Sbjct: 353 TEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQE 412

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++  ++    + LD   +  +I     +G V+K   L   M  +  +PD + +  +I+
Sbjct: 413 ALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIK 472

Query: 440 AYNALGMTEAAQNLENKM 457
            Y ALG  + A  L+N+M
Sbjct: 473 KYYALGKVDEALELQNEM 490



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 144/308 (46%), Gaps = 2/308 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+AS  F  M    + P      AL+    + G  D +     DM   +  K  V+TY+I
Sbjct: 3   EEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM-GAAGIKRSVFTYNI 61

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    K    ++   +  +M   G     VTYN++IDG+GK    +E    F  M +  
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM-KDA 120

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C PD+ T N++I+ +     + K  ++ +E    G+K ++ T +    ++ + GM  + 
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 180

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
                 M++    P   TY  +I+   KAG++ +  +  +++   G+K N +TY +L+  
Sbjct: 181 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 240

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G + + + + R + N+ V  +   +  ++  + +A ++E   ++   MKE+   PD
Sbjct: 241 LCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 300

Query: 431 NITFATMI 438
            + + T++
Sbjct: 301 LLLYGTIL 308



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 25/265 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L +  + ++A  +F  ML+ G+ P+ + YTALV  + ++  ++ A   + +M
Sbjct: 233 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     KPD+  Y  ++       R +  + ++ E+   GI  +AV Y T++D Y K+ +
Sbjct: 293 KEKC-IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQ 351

Query: 236 -----------------------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                                  FE  +  F  M++ G   PD     ++I      GN+
Sbjct: 352 ATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKG-MMPDKIAYTALIDGNMKHGNL 410

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           ++     +    +G++ D+     L      +G   K R+++D M  +   P  V Y  +
Sbjct: 411 QEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCL 470

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGM 357
           I+ +   G +++  E   +M  RGM
Sbjct: 471 IKKYYALGKVDEALELQNEMAKRGM 495



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%)

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+K   FP   + N ++    K G  +   ++FK M   G+K +  TY  ++    K G 
Sbjct: 12  MRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 71

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           +    S+  Q++ +    D   +N +I  +G+ G +++   +F  MK+  C PD IT+  
Sbjct: 72  LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 131

Query: 437 MIQAY 441
           +I  +
Sbjct: 132 LINCF 136


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 151/314 (48%), Gaps = 26/314 (8%)

Query: 102 GLLRQ-QQWY----QARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GL+ Q + W+    Q  C     T+T L+    K ++  +A+ +FE+MLS+G  P++  Y
Sbjct: 171 GLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTY 230

Query: 153 TALVSAYGQSGLLDEAFSTI----NDMKSVSDC------------KPDVYTYSILIKSCT 196
           TAL+  + ++G  ++A        ND   + D             +P+V TY  L+    
Sbjct: 231 TALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLC 290

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K H+      +L  MS  G E + + Y+ +IDG+ K  K +E +  F+ M+   GC P++
Sbjct: 291 KAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKML-GHGCSPNV 349

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
           +T +S+I        ++   K   +        ++     +     + G  D+   +M  
Sbjct: 350 YTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLM 409

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M+++  +P VVTY  +I+ FGKAG +++  E  + M  +G  PN ITY  L++    AGL
Sbjct: 410 MEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGL 469

Query: 377 IMKVDSILRQVENS 390
           +     +L +++ +
Sbjct: 470 LDDAHKLLEEMKQT 483



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 162/363 (44%), Gaps = 40/363 (11%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           FT+ +  +GK    E+A  +   M+S G  P    Y+ ++     +  +++AF    +MK
Sbjct: 93  FTRCLCCIGK---FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMK 149

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKI---LAEMSYLGIECSAVTYNTIIDGYGKA 233
             +   PDVYTY+ L+    +F +  LIE+      EM   G   + VTY  +I  Y K 
Sbjct: 150 R-NGITPDVYTYTTLLD---RFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKT 205

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +K       F  M+ S GC P+I T  ++I  +  +G  EK  + Y        K DI  
Sbjct: 206 RKLSRANEIFEMML-SNGCVPNIVTYTALIDGHCKAGETEKACQIYARMK--NDKVDIPD 262

Query: 294 LNILTK------------SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
           ++I  +            +YG       +A    + R +++ M      P  + Y+ +I+
Sbjct: 263 VDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALID 322

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS--- 390
            F K G +++ +E F KM   G  PN  TY SL+   +    L + +  + + +ENS   
Sbjct: 323 GFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAP 382

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           +V++ T     ++    + G  ++   L L M+E+ C P+ +T+  MI  +   G  +  
Sbjct: 383 NVVIYTE----MVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRC 438

Query: 451 QNL 453
             L
Sbjct: 439 LEL 441



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 158/358 (44%), Gaps = 17/358 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++K++  L    + E+A  LF+ M  +G+ P V  YT L+  + + GL+++A +  ++M
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEM 183

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +    C P+V TY+ LI +  K  +     +I   M   G   + VTY  +IDG+ KA +
Sbjct: 184 QQ-DGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGE 242

Query: 236 FEEMESSFSAM----------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279
            E+    ++ M                V+S    P++ T  +++     +  +++     
Sbjct: 243 TEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLL 302

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
              +L G + +    + L   + + G  D+ + V   M      P V TY+ +I+   K 
Sbjct: 303 ETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKD 362

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             ++   +   KM      PN + Y  +V    K G   +   ++  +E      +   +
Sbjct: 363 KRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTY 422

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             +I  +G+AG V++  EL   M  + C P+ IT+  +I    A G+ + A  L  +M
Sbjct: 423 TAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 25/344 (7%)

Query: 139 VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           +M+++G  PS  ++ +LV AY +SG    A+  +  M  +   +P    Y+ILI      
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKM-VICGYQPGYVVYNILIGGICST 59

Query: 199 HRFDLIEKI-LAEMSY-----LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
                +E I LAE +Y     +G+  + V             KFE+  +    M+ S G 
Sbjct: 60  EDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMM-SKGF 118

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PD  T + +I    N+  +EK  + + E    G+  D+ T   L   + + G+ ++ R+
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
             D MQ+    P VVTY  +I  + K   + +  E F+ M   G  PN +TY +L+  + 
Sbjct: 179 WFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHC 238

Query: 373 KAGLIMKVDSILRQVENSDV----------ILDTPF-------FNCIISAYGQAGDVEKM 415
           KAG   K   I  +++N  V          I+D+         +  ++    +A  V++ 
Sbjct: 239 KAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEA 298

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +L  TM    C P+ I +  +I  +  +G  + AQ +  KM+ 
Sbjct: 299 RDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLG 342



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 152/350 (43%), Gaps = 15/350 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + ++A  L E M  +G +P+  +Y AL+  + + G LDEA      M
Sbjct: 281 TYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM 340

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C P+VYTYS LI    K  R DL  K+L +M       + V Y  ++DG  K  K
Sbjct: 341 LG-HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGK 399

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E       M+E  GC+P++ T  +MI  +G +G +++  +        G   +  T  
Sbjct: 400 TDE-AYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYR 458

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF-----GKAGHIEKMEEYFK 350
           +L      AG+ D    +++ M++ ++   +  Y  VIE F        G + ++ E   
Sbjct: 459 VLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSE--- 515

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
                G  P    Y  L+  + KAG +     +  ++ +        + + +I +   A 
Sbjct: 516 ----DGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVS-LIESLTLAC 570

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
            V+K  +L+  M  R  VP+      +I+    +G  E A  L + +  M
Sbjct: 571 KVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSICQM 620



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 24/268 (8%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQAR 113
           R + A+K + K + +    +  P  V+  E +D   K  K   A ++  ++ ++  Y   
Sbjct: 364 RLDLALKVLTKMLEN----SCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCY-PN 418

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
             T+T ++   GK  + ++   L ++M S G  P+   Y  L++    +GLLD+A   + 
Sbjct: 419 VVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLE 478

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +MK     K  +  Y  +I+  +  H F     +LAE+S  G       Y  +ID + KA
Sbjct: 479 EMKQTYWPK-HIGMYRKVIEGFS--HEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKA 535

Query: 234 KKFE------EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            + E      E  SSFSA  ++        T  S+I +   +  ++K  K Y++    G 
Sbjct: 536 GRLEMALELHEELSSFSAAYQN--------TYVSLIESLTLACKVDKAFKLYSDMTRRGF 587

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMD 315
             ++  L  L K   R G +++   + D
Sbjct: 588 VPELSMLVCLIKGLLRVGKWEEALQLSD 615


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 165/401 (41%), Gaps = 71/401 (17%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           + + PEQA   F  M+  GL P  + +  L+    +S   ++A+   N+ K   + K DV
Sbjct: 107 RSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG--NVKLDV 164

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           Y++ I+IK C +    D   ++L +M  +G+  + V Y T+IDG  K    E  +  F  
Sbjct: 165 YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYK 224

Query: 246 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 271
           M E                                    G  P+++T NSMI    N G 
Sbjct: 225 MGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 284

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILT--------------------------------- 298
           +    + ++E    GV  ++ T N L                                  
Sbjct: 285 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 344

Query: 299 --KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
               Y   G  DK  S+ + M+     P++ TYNI+I  F +A +   + +  ++M+ RG
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ +TY  L+ A  ++  I K   I   +E + ++ D   +  +I      GD+++  
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +LF ++ E H  P+++ + TMI  Y   G +  A  L  +M
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEM 505



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 147/321 (45%), Gaps = 12/321 (3%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK    E+   LF  M    +  +   YT L++ + + GL  +       MK ++   
Sbjct: 208 GCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMK-LTGIV 266

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+VYTY+ +I  C    + +   ++  EM   G+ C+ VTYNT+I G  + ++  E E  
Sbjct: 267 PNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL 326

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M +  G  P++ + N++I  Y + GN++K    +N+    G    + T NIL   + 
Sbjct: 327 MCRM-KRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFS 385

Query: 303 RA----GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
            A    G+ D +R     M+ R   P+ VTY I+++   ++ +IEK  + +  M+  G+ 
Sbjct: 386 EAKNSAGVTDMVRE----MEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLV 441

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            +   Y  L+      G + +   + + ++   +  +   +N +I  Y + G   +   L
Sbjct: 442 ADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRL 501

Query: 419 FLTMKERHCVPDNITFATMIQ 439
              M E   VP+  ++ + IQ
Sbjct: 502 LKEMGENGMVPNVASYNSTIQ 522



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 126/279 (45%), Gaps = 8/279 (2%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVD 150
           K   A ++F  +R++      C   T   ++ G C++    +A  L   M  DGL P++ 
Sbjct: 284 KLNNAFELFDEMRERG---VACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLI 340

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y  L+  Y   G LD+A S  N MKS S   P + TY+ILI   ++      +  ++ E
Sbjct: 341 SYNTLIDGYCSIGNLDKASSLFNQMKS-SGQSPSLATYNILIAGFSEAKNSAGVTDMVRE 399

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G+  S VTY  ++D   ++   E+    +S+M E  G   DI+    +I      G
Sbjct: 400 MEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM-EKAGLVADIYIYGVLIHGLCVVG 458

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           ++++  K +   + M +K +    N +   Y + G   +   ++  M +    P V +YN
Sbjct: 459 DMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN 518

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
             I+   K     + E   K M   G+KP SI+  +++S
Sbjct: 519 STIQILCKDEKWTEAEVLLKDMIELGLKP-SISIWNMIS 556



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 323 FPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           FPT V+ +  +I    ++   E+   YF +M  RG+ P S T+ +L+    K+    K  
Sbjct: 91  FPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAW 150

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +  + +  +V LD   F  +I    + G ++K  E+   M+E    P+ + + T+I   
Sbjct: 151 RVFNETK-GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 209

Query: 442 NALGMTEAAQNLENKM 457
              G  E  + L  KM
Sbjct: 210 CKNGDIERGKQLFYKM 225


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 171/374 (45%), Gaps = 6/374 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K + ++ A  ++  +  + + ++R  TF  ++  L K  +  +A  +F+ M   G
Sbjct: 479 LDGLFKMENFEGASTLWKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    Y  L+  Y ++  + +AF     M+      P +  Y+ LI    K  R    
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EXISPSIEMYNSLISGLFKSRRLVEX 596

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L EM   G+  + VTY  +IDG+ K    ++  SS+  M E+G    +I   ++M+S
Sbjct: 597 TDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG-LSANIIICSTMVS 655

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                G I++      +    G   D +      KS  R     K+   +D   K F  P
Sbjct: 656 GLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDIRYAAIQKIADSLDESCKTFLLP 712

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             + YNI I    K G ++    +F  +  +G  P++ TYC+L+  YS AG + +   + 
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 772

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            ++    ++ +   +N +I+   ++ +V++   LF  + ++   P+ +T+ T+I  Y  +
Sbjct: 773 DEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 832

Query: 445 GMTEAAQNLENKMI 458
           G  +AA  L++KMI
Sbjct: 833 GNMDAAFKLKDKMI 846



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 155/363 (42%), Gaps = 38/363 (10%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++   L+  L K  +   A  +++ M+  G+ P V + + +V+A+ + G +DEA   +  
Sbjct: 192 RSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKK 251

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+++   +P++ TY  LI         +  + +L  MS  G+  + VTY  +I GY K  
Sbjct: 252 MENLG-VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 310

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           K +E E     M E     PD      +I  Y  +G I+   +  +E   +G+K ++   
Sbjct: 311 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 370

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y + G   +   V+  M      P   +YN +++ + + GH  +      KM  
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430

Query: 355 RGMKPNSITYCSLVSAYSKAG----------LIMKVDSILRQVENSDVILDTPF------ 398
            G++P  +TY +L+    + G          L+MK      +V  S  +LD  F      
Sbjct: 431 EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYS-TLLDGLFKMENFE 489

Query: 399 --------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
                               FN +IS   + G + +  E+F  MK+  C PD IT+ T+I
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 439 QAY 441
             Y
Sbjct: 550 DGY 552



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 148/355 (41%), Gaps = 36/355 (10%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  + + M   G+  +V  YT L+  Y +   +DEA   +  M+  +   PD   Y +
Sbjct: 278 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 337

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    +  + D   ++L EM  LG++ +    N++I+GY K  +  E E   + MV+  
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-W 396

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD ++ N+++  Y   G+  +     ++    G++  + T N L K   R G +D  
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 311 RSVMDFMQK-----------------------------------RFFFPTVVTYNIVIET 335
             +   M K                                   R F  + +T+N +I  
Sbjct: 457 LQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G + + EE F KMK  G  P+ ITY +L+  Y KA  + +   +   +E   +   
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPS 576

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +N +IS   ++  + +  +L   M  R   P+ +T+  +I  +   GM + A
Sbjct: 577 IEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 151/340 (44%), Gaps = 35/340 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K      A K+ G + +++      + +  L+  L K ++  + + L   M   G
Sbjct: 549 IDGYCKASNVGQAFKVKGAM-EREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRG 607

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD-- 202
           L P++  Y AL+  + + G+LD+AFS+  +M   +    ++   S ++    +  R D  
Sbjct: 608 LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTE-NGLSANIIICSTMVSGLYRLGRIDEA 666

Query: 203 --LIEKILAEMSYLGIEC----------------------------SAVTYNTIIDGYGK 232
             L++K++    +   EC                            + + YN  I G  K
Sbjct: 667 NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCK 726

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             K ++    FS M+   G  PD FT  ++I  Y  +GN+++  +  +E    G+  +I 
Sbjct: 727 TGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIV 785

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L     ++   D+ + +   + ++  FP VVTYN +I+ + K G+++   +   KM
Sbjct: 786 TYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKM 845

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
              G+ P+ +TY +L++   K G I +   +L Q+  + V
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 152/340 (44%), Gaps = 12/340 (3%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C+  + + A  L + ML  GLK ++ +  +L++ Y + G + EA   I  M    + K
Sbjct: 341 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLK 399

Query: 183 PDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           PD Y+Y+ L+   C + H    F+L +K+L E    GIE + +TYNT++ G  +   F++
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE----GIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
               +  M++ G   PD    ++++       N E     + +    G      T N + 
Sbjct: 456 ALQIWHLMMKXG-VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               + G   +   + D M+     P  +TY  +I+ + KA ++ +  +    M+   + 
Sbjct: 515 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXIS 574

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+   Y SL+S   K+  +++   +L ++    +  +   +  +I  + + G ++K    
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  M E     + I  +TM+     LG  + A  L  KM+
Sbjct: 635 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 20/263 (7%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS------VDVYTALVSAYGQSGLLDE 167
           C T    +  LG+    ++A+LL + M+  G  P        D+  A +     S  LDE
Sbjct: 650 CSTMVSGLYRLGRI---DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADS--LDE 704

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           +  T           P+   Y+I I    K  + D   +  + +S  G      TY T+I
Sbjct: 705 SCKTF--------LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLI 756

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            GY  A   +E       M+  G   P+I T N++I+    S N+++ ++ +++ +  G+
Sbjct: 757 HGYSAAGNVDEAFRLRDEMLRRG-LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGL 815

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             ++ T N L   Y + G  D    + D M +    P+VVTY+ +I    K G IE+  +
Sbjct: 816 FPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMK 875

Query: 348 YFKKMKHRGMKPNSITYCSLVSA 370
              +M   G+    I YC+LV  
Sbjct: 876 LLNQMIKAGVDSKLIEYCTLVQG 898



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/485 (19%), Positives = 207/485 (42%), Gaps = 48/485 (9%)

Query: 1   MHLSNSIFTPPTTAT-HLPKFYKEPVFRIQAI------KRSPGPIQELGIQKEAEKDLSK 53
           MH   SIFTPP  +  HL    + P+   + +      +  P P  EL         +S+
Sbjct: 1   MHRYFSIFTPPLPSRLHL----RRPIHLSRTLLWKLRDESHPAP-PEL---------VSR 46

Query: 54  ILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR 113
           I R       + +  +  K   ++   +++A+   ++      +L  F  + +QQ ++  
Sbjct: 47  ICRLVL----LRRCNAISKLNFVFSDDIVDAVLRNLRLNP-TASLGFFQFVSKQQNFRPN 101

Query: 114 CQTFTKLMVMLGK-----------------CKQPEQASLLFE--VMLSDGLKPSVDVYTA 154
            +++ KL+ +L +                 CK  ++ +++++  V +      S  V+  
Sbjct: 102 VKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDM 161

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++  Y + GL   A    ++M       P + + + L+ +  K         +  +M  +
Sbjct: 162 ILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRV 220

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           GI       + +++ + K  K +E  + F   +E+ G  P+I T +S+I+ Y + G++E 
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDE-AAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEA 279

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVI 333
            +      +  GV  ++ T  +L K Y +    D+   V+  MQ+     P    Y ++I
Sbjct: 280 AKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLI 339

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + + + G I+       +M   G+K N     SL++ Y K G I + + ++ ++ + ++ 
Sbjct: 340 DGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLK 399

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D+  +N ++  Y + G   +   L   M +    P  +T+ T+++    +G  + A  +
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 454 ENKMI 458
            + M+
Sbjct: 460 WHLMM 464



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 18/179 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K +  ++A  LF  +   GL P+V  Y  L+  Y + G +D AF  + D 
Sbjct: 786 TYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFK-LKDK 844

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  P V TYS LI    K    +   K+L +M   G++   + Y T++ G  K   
Sbjct: 845 MIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSN 904

Query: 236 FEEMESSFSAMVESGGC-------HP----DIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           + EM S   A+ ++  C       H      +  L+  I  +G  G I     W+N  N
Sbjct: 905 YNEM-SKPEALKQNMNCFLLPKFKHSWKFVGVVALDCPIRIFGPKGTI-----WFNLIN 957


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 167/372 (44%), Gaps = 4/372 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           IK +K + A      +R+ ++  A    +T L+  L   +  +    LF+ M   G   +
Sbjct: 176 IKSRKLREAFTFIQTMRKLKFRPAF-SAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V ++T L+  + + G +D A S +++MKS S  +PDV  Y++ I    K  + D+  K  
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNS-LEPDVVLYNVCIDCFGKAGKVDMAWKFF 293

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM   G+    VTY ++I    KA +  E    F  M ++    P  +  N+MI  YG 
Sbjct: 294 HEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-PCAYAYNTMIMGYGM 352

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  E            G    + + N +    GR G  D+     + M+K    P + T
Sbjct: 353 AGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLST 411

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+I+   KAG +E        MK  G+ PN IT   +V    KA  +    SI   ++
Sbjct: 412 YNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLD 471

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +     D   +  +I   G+ G V++  +L+  M + + +P+ + + ++I+ +   G  E
Sbjct: 472 HKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 449 AAQNLENKMIAM 460
               + N+M+ +
Sbjct: 532 DGHKIYNEMLRL 543



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 159/352 (45%), Gaps = 6/352 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPS 148
           K  +   A+++F  + Q +  Q  C      M+M  G   + E A  L E     G  PS
Sbjct: 317 KADRLNEAVELFEHMDQNK--QVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  Y  ++S  G+ G +DEA     +MK   D  P++ TY+I+I    K  + +    + 
Sbjct: 375 VVSYNCILSCLGRKGQVDEALKKFEEMKK--DAIPNLSTYNIMIDMLCKAGKLETALVVR 432

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   G+  + +T N ++D   KA++ ++  S F  + +   C PD  T  S+I   G 
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHKTCRPDAVTYCSLIEGLGR 491

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G +++  K Y +        +      L +++ + G  +    + + M +    P ++ 
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            N  ++   KAG IEK    F+++K+ G  P++ +Y  L+    KAG   +   +   ++
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
               +LDT  +N +I  + ++G V K  +L   MK +   P  +T+ ++I  
Sbjct: 612 EQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 163/360 (45%), Gaps = 37/360 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ ML K  + E A ++ + M   GL P+V     +V    ++  LD+A S    +
Sbjct: 411 TYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL 470

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C+PD  TY  LI+   +  R D   K+  +M       +AV Y ++I  + K  +
Sbjct: 471 DHKT-CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    ++ M+  G C PD+  LN+ +     +G IEK    + E   +G   D ++  
Sbjct: 530 KEDGHKIYNEMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 296 IL----------------------------TKSYG-------RAGMYDKMRSVMDFMQKR 320
           IL                            T++Y        ++G  +K   +++ M+ +
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              PTVVTY  VI+   K   +++    F++ K +G++ N + Y SL+  + K G I + 
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I+ ++    +  +   +NC++ A  +A ++ +    F +MK+  C P+ IT++ +I  
Sbjct: 709 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 2/302 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K  + E+   LF+ + + G  P    YT L+    ++G   EA+     MK    C  D 
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE-QGCVLDT 619

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
             Y+ +I    K  + +   ++L EM   G E + VTY ++IDG  K  + +E    F  
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
             +S G   ++   +S+I  +G  G I++      E    G+  ++ T N L  +  +A 
Sbjct: 680 -AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +       M+     P  +TY+I+I    K     K   ++++M+ +G KPN  TY 
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +++S  +KAG I++ D++  + +    + D+  +N II     A        LF   + +
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 426 HC 427
            C
Sbjct: 859 GC 860



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 1/264 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y+ L+    +  +F+ +E+IL EMS  G   S  T   I+  + K++K  E   +F   
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLRE-AFTFIQT 190

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           +      P      ++I A   S + + M   + +   +G   ++     L + + R G 
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D   S++D M+     P VV YN+ I+ FGKAG ++   ++F +MK  G+  + +TY S
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTS 310

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++    KA  + +   +   ++ +  +     +N +I  YG AG  E    L    + + 
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 427 CVPDNITFATMIQAYNALGMTEAA 450
           C+P  +++  ++      G  + A
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEA 394



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +T L+    KC + E    ++  ML  G  P + +    +    ++G +++  +   ++
Sbjct: 516 VYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEI 575

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K++    PD  +Y+ILI    K        ++   M   G       YNT+IDG+ K+ K
Sbjct: 576 KNLGFI-PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +       M ++ G  P + T  S+I        +++    + E    G++ ++   +
Sbjct: 635 VNKAYQLLEEM-KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYS 693

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +G+ G  D+   +M+ + ++   P V T+N +++   KA  I +    F+ MK  
Sbjct: 694 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDL 753

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN ITY  L+    K     K     ++++      +   +  +IS   +AG++ + 
Sbjct: 754 KCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEA 813

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             LF   KE+  V D+  +  +I+ 
Sbjct: 814 DTLFEKFKEKGGVADSAIYNAIIEG 838



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 2/188 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+   GK  + ++A L+ E ++  GL P+V  +  L+ A  ++  + EA      MK
Sbjct: 692 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +  C P+  TYSILI    K  +F+       EM   G + +  TY T+I G  KA   
Sbjct: 752 DLK-CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNI 810

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E ++ F    E GG   D    N++I    N+       + + E  L G     +T  +
Sbjct: 811 VEADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVV 869

Query: 297 LTKSYGRA 304
           L  S  +A
Sbjct: 870 LLDSLHKA 877



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 44/276 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  + ++A +LFE   S G++ +V +Y++L+  +G+ G +DEA+  + ++
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKA 233
                  P+VYT++ L+ +  K    ++ E ++   S   ++C+   +TY+ +I G  K 
Sbjct: 716 MQ-KGLTPNVYTWNCLLDALVKAE--EISEALVCFQSMKDLKCTPNYITYSILIHGLCKI 772

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +KF +    +  M +  G  P++FT  +MIS    +GNI + +  + +F   G  AD   
Sbjct: 773 RKFNKAFVFWQEM-QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD--- 828

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
                                              YN +IE    A         F++ +
Sbjct: 829 --------------------------------SAIYNAIIEGLSNANRASDAYRLFEEAR 856

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMK---VDSILRQ 386
            +G    + T   L+ +  KA  I +   V ++LR+
Sbjct: 857 LKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRE 892


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 3/322 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           L+   K KK   A  IF  +  ++ +     +++ L+    K  +  +A  L++ M+   
Sbjct: 453 LNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN 512

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P+V  Y A ++   + G + +A     +M + + C PDV TYS LI   +   + D  
Sbjct: 513 CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVA-AGCSPDVITYSTLIHGFSLARKHDQA 571

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G   +AVTYN ++ G  K  K +E    F  MVE  GC PD  T  +++ 
Sbjct: 572 HELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER-GCDPDRVTYTTLLY 630

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            + N G IE+  + ++E    G   D+   N L K + RAG   + + +   M  R   P
Sbjct: 631 GFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKP 690

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
             V++NI+I+   KA  ++   E F++M+   G  P+ +TY SL+        + +   +
Sbjct: 691 DTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKV 750

Query: 384 LRQVENSDVILDTPFFNCIISA 405
            ++++   +  D   FN ++ A
Sbjct: 751 FKEIDRLKLSPDPHAFNVLLEA 772



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 157/354 (44%), Gaps = 14/354 (3%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K  +  L+I G  R  Q     C +  + +   G+    + A  L E M+  G  P +  
Sbjct: 357 KAEEACLEIAG--RNIQPSSGTCHSVIQELCKAGRV---DSALSLLETMIKRGYCPDMAT 411

Query: 152 YTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSCTKFHR----FDLIEK 206
           ++ L++   ++  + EA   +  M + +S      ++Y+ L+ S  K  +    F +   
Sbjct: 412 HSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFST 471

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +++E S++      V+Y+ +IDG+ K  +    E  +  M++   C P++ T N+ ++  
Sbjct: 472 MVSERSFVP---DVVSYSILIDGFCKIDELGRAEKLYKQMIDLN-CVPNVTTYNAFLNGL 527

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G I   +  Y E    G   D+ T + L   +  A  +D+   + + M  R   P  
Sbjct: 528 MRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNA 587

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTYN ++    K    ++  E F+KM  RG  P+ +TY +L+  +   G I +   +  +
Sbjct: 588 VTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDE 647

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + +     D   +NC++  + +AG   +  +LF  M  R C PD ++   MI  
Sbjct: 648 MVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDG 701



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 2/288 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y +L+++  ++  + +AF+  + M S     PDV +YSILI    K       EK+  +M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             L    +  TYN  ++G  +  +  + +  +  MV + GC PD+ T +++I  +  +  
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMV-AAGCSPDVITYSTLIHGFSLARK 567

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            ++  + +      G + +  T N L     +    D+   +   M +R   P  VTY  
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++  F   G IE+  E F +M  +G  P+ + Y  L+  + +AG   +   + + + +  
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMI 438
              DT   N +I    +A  ++   E+F  M++ H C PD +T+ ++I
Sbjct: 688 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 735



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 145/343 (42%), Gaps = 41/343 (11%)

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +L++  G+  + E+A L    +    ++PS     +++    ++G +D A S +  M   
Sbjct: 347 RLLIESGRIDKAEEACL---EIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKR 403

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY--LGIECSAVTYNTIIDGYGKAKKF 236
             C PD+ T+S+LI    K  +    ++ L  M         S  +YN++++   KAKK 
Sbjct: 404 GYC-PDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKV 462

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            +  + FS MV      PD+ + + +I  +     + + EK Y +   +    ++ T N 
Sbjct: 463 HQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 522

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
                 R G     + V + M      P V+TY+ +I  F  A   ++  E F+ M  RG
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            +PN++TY                                   NC++    +    ++  
Sbjct: 583 CRPNAVTY-----------------------------------NCLLHGLCKESKPDEAH 607

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           ELF  M ER C PD +T+ T++  +  +G  E A  + ++M++
Sbjct: 608 ELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVS 650



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 157/367 (42%), Gaps = 44/367 (11%)

Query: 132 QASLLFEVMLSDGLKPSVDVY------------------------------------TAL 155
           +AS LF  M+  G KP   +Y                                    TA 
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAF 311

Query: 156 VSAYGQSGLLDEAFSTINDMK-SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           +S   +SG +++AF     M+ S+S  +P    Y +LI+   +  R D  E+   E++  
Sbjct: 312 LSGLCKSGKIEQAFEACRTMQESLSSSQP---VYDMLIRLLIESGRIDKAEEACLEIAGR 368

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I+ S+ T +++I    KA + +   S    M++ G C PD+ T + +I+    +  I++
Sbjct: 369 NIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYC-PDMATHSMLINELCKADKIQE 427

Query: 275 MEKWYNEFN--LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTYNI 331
            +++    +  +    +   + N L  S  +A    +  ++   M  +R F P VV+Y+I
Sbjct: 428 AQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSI 487

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+ F K   + + E+ +K+M      PN  TY + ++   + G I     +  ++  + 
Sbjct: 488 LIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAG 547

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
              D   ++ +I  +  A   ++  ELF TM  R C P+ +T+  ++         + A 
Sbjct: 548 CSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAH 607

Query: 452 NLENKMI 458
            L  KM+
Sbjct: 608 ELFRKMV 614



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +P++A  LF  M+  G  P    YT L+  +   G +++A    ++M
Sbjct: 589 TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEM 648

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S     PDV  Y+ L+K   +  +    +++   M     +   V++N +IDG  KAK+
Sbjct: 649 VSKGH-DPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKR 707

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++    F  M +  GC PD+ T NS+I        + +  K + E + + +  D    N
Sbjct: 708 LDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFN 767

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
           +L ++     +Y          + RF  P    +N+++E    AGH
Sbjct: 768 VLLEAIKCGIVYQ--------FEIRFKDPP--AFNVLMEAMHAAGH 803



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 159/406 (39%), Gaps = 65/406 (16%)

Query: 108 QWYQAR-----CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162
           +W QAR       T+  L+  L + +  +QA  +FE M++ G+ P+   Y  LV +    
Sbjct: 118 RWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYE 177

Query: 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-------FHRF---DLIEKILAEMS 212
              DEA     +M      KP    Y   +  C K       F R    DL +++  EM 
Sbjct: 178 RNSDEAVRFFGEMVD-KGFKPSSTLYQ-KVTECLKATGKEGEFSRVFGRDLEKRVAVEMM 235

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
                  A+  N +I       K  E    F AMV+S GC PD    + M+ A+    N+
Sbjct: 236 LK----KALLVNFVIQ-----DKAIEASKLFRAMVKS-GCKPDATIYSYMVLAHCKLENL 285

Query: 273 EKMEKWYNE--------FNLMGVKADIQTL---------------------------NIL 297
           ++  K + E         N +   A +  L                           ++L
Sbjct: 286 DEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDML 345

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            +    +G  DK       +  R   P+  T + VI+   KAG ++      + M  RG 
Sbjct: 346 IRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGY 405

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFNCIISAYGQAGDVEKM 415
            P+  T+  L++   KA  I +    L+ ++   S        +N ++++  +A  V + 
Sbjct: 406 CPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQA 465

Query: 416 GELFLTM-KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             +F TM  ER  VPD ++++ +I  +  +     A+ L  +MI +
Sbjct: 466 FAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 511


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 164/349 (46%), Gaps = 13/349 (3%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPS--VDVYTALVSAYGQSGLLDEAFSTI 172
           FT   ++ G C   E  +A  L E     G+ P   V ++  ++  + ++G +DEA S +
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHL 74

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           + M    DCKP+  +Y+ LI +     R     + L  M+  G+  + VTYN +  G GK
Sbjct: 75  HRM----DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGK 130

Query: 233 AKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           A   +E   +F  M  +ES G      T N ++     SG  ++  K      L  ++ +
Sbjct: 131 AGLLDE---AFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPN 187

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I TLN++  ++ +A   ++   + D M +  F PT+VT+N ++E F     ++   +  +
Sbjct: 188 ILTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLE 247

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M H   KPN +TY  +V  +++ G +++  + L Q+       +    N  ++   + G
Sbjct: 248 TMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTG 307

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +++        M E  C  +  T+ ++++ +  LG  + A+ +  +MIA
Sbjct: 308 EMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIA 356



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 5/342 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L    + ++A    + M   G+ P+   Y A+ +  G++GLLDEAF  +  M
Sbjct: 85  SYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVM 144

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S       V T++ +++   K  R D   K++  M    IE + +T N I+  + KA +
Sbjct: 145 ESAGFALTAV-TFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAAR 203

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE       MVE G C P I T N+++  + N+  ++   K          K +  T +
Sbjct: 204 PEEALGMTDIMVEMGFC-PTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYS 262

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+ + +   G   + R+ ++ +    + P ++  N  +    K G ++    +   M   
Sbjct: 263 IMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEE 322

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK- 414
           G + N+ TY SLV  + K G + + + +L ++     + D+  ++ +I     AG +E  
Sbjct: 323 GCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHA 382

Query: 415 -MGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 454
            M  L +T       PD  TF  +I+    LG M  AA  LE
Sbjct: 383 FMVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLE 424



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 121/280 (43%), Gaps = 46/280 (16%)

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---------------------------- 250
           S  TY T++ G+  A +F+E +       ++G                            
Sbjct: 13  SEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKS 72

Query: 251 -----GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
                 C P+  + N++I A  +SG I++  +        GV  +  T N +    G+AG
Sbjct: 73  HLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAG 132

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           + D+   +M  M+   F  T VT+N V+E   K+G  ++  +  + M  R ++PN +T  
Sbjct: 133 LLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLN 192

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAYGQAGDVEKMGELF 419
            ++ A+ KA    + +  L     +D++++  F      FN ++  +     ++   +L 
Sbjct: 193 LILHAFCKAA---RPEEALGM---TDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLL 246

Query: 420 LTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMI 458
            TM    C P+ +T++ M+Q +  +G M EA   LE  ++
Sbjct: 247 ETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVV 286



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD--IQTLNILTKSYGRAGMYDKMRSVM 314
           FT  +++  +  +G  ++ ++   EF   G+     +   N++ K +  AG  D+ +S +
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHL 74

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M  +   P  V+YN +I+    +G I++  E  + M  RG+ PN +TY ++ +   KA
Sbjct: 75  HRMDCK---PNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKA 131

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           GL+ +   ++  +E++   L    FN ++    ++G  ++  ++  TM  R+  P+ +T 
Sbjct: 132 GLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTL 191

Query: 435 ATMIQAYNALGMTEAAQNLENKMIAM 460
             ++ A+      E A  + + M+ M
Sbjct: 192 NLILHAFCKAARPEEALGMTDIMVEM 217



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/293 (18%), Positives = 132/293 (45%), Gaps = 5/293 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++ G++ +   +     TF  ++  L K  +P++A  + E ML   ++P++     ++
Sbjct: 137 AFELMGVM-ESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLIL 195

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
            A+ ++   +EA    + M  +  C P + T++ L++      + D   K+L  M++   
Sbjct: 196 HAFCKAARPEEALGMTDIMVEMGFC-PTIVTFNALLELFCNTDQMDSAAKLLETMAHSKC 254

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           + + VTY+ ++  + +  +  E  +    +V  G   P++   N+ ++    +G ++   
Sbjct: 255 KPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYA-PNLLVCNAYVAGLCKTGEMDLAS 313

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           ++       G +A+  T N L + + + G  D+   V++ M      P   TY+++I+  
Sbjct: 314 RFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGL 373

Query: 337 GKAGHIEKMEEYFKKMKH--RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
             AG IE       ++       +P+  T+  L+    + G + +   +L ++
Sbjct: 374 CSAGQIEHAFMVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLERM 426



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS--LVSAYSKAGLIMK 379
           F  +  TY  ++     AG  ++ +   ++ K  GM P S+      ++  +S+AG + +
Sbjct: 10  FVHSEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDE 69

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             S L ++   D   ++  +N +I A   +G +++  E    M +R   P+ +T+  M  
Sbjct: 70  AKSHLHRM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMAT 126

Query: 440 AYNALGMTEAAQNLENKM 457
                G+ + A  L   M
Sbjct: 127 GLGKAGLLDEAFELMGVM 144


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 166/356 (46%), Gaps = 14/356 (3%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L  +I   LR Q W+      F  L+   GK     +A  + + M   G KPSV  
Sbjct: 120 KKWNLVSEILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVIS 179

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
            TAL+ AYG++    +A +    M++ S  +P   TY I++KS  +  ++   E I  ++
Sbjct: 180 QTALMEAYGRAKQYRKAEAVFRRMQT-SGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDL 238

Query: 212 ---SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS---A 265
                   +     ++ +I  Y KA  + +    F+ M E G       T NS++S    
Sbjct: 239 LNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERG-IPLSTVTFNSLMSFETD 297

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           Y    NI      Y++     +K D+ + ++L K+YG+A   ++  +V + M      PT
Sbjct: 298 YKEVSNI------YDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPT 351

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             +YNI+I+ F  +G +E+    FK M+   ++P+  +Y ++V AY  A  +   +   R
Sbjct: 352 RKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFR 411

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           +++   +  +   +  ++  Y +  +VE++  ++  M+ +   P+   + T++  +
Sbjct: 412 RIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVH 467



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 5/240 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++ M  K     QA  LF  M   G+  S   + +L+S         +  S I D  
Sbjct: 253 FHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETDY----KEVSNIYDQM 308

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             +  KPDV +YS+LIK+  K  R +    +  EM   G+  +  +YN +ID +  +   
Sbjct: 309 QRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLV 368

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           EE  + F AM       PD+ +  +M+ AY N+ +++  EK++      G+K ++     
Sbjct: 369 EEAHTVFKAM-RRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGT 427

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L K Y +    +++  V + M+ +   P    Y  +++  G+         +FK+M+ RG
Sbjct: 428 LMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARG 487



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 2/182 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +++ L+   GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SGL++EA +    M
Sbjct: 319 SYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAM 378

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +PD+ +Y+ ++ +       D  EK    +   G++ + V Y T++ GY K   
Sbjct: 379 RR-HRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNN 437

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E +   +  M    G  P+     +++  +G + +      W+ E    G  AD +  N
Sbjct: 438 VERVMRVYERM-RMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKN 496

Query: 296 IL 297
           IL
Sbjct: 497 IL 498



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 6/192 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++AYG  G+  + E+     N  G K  + +   L ++YGRA  Y K  +V   MQ   
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSG 207

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ VTY I++++F +    ++ E  F+ +   K    KP+   +  ++  Y KAG   
Sbjct: 208 PEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYA 267

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  Q+    + L T  FN ++S      D +++  ++  M+     PD ++++ +I
Sbjct: 268 QARKLFAQMSERGIPLSTVTFNSLMSF---ETDYKEVSNIYDQMQRTALKPDVVSYSLLI 324

Query: 439 QAYNALGMTEAA 450
           +AY      E A
Sbjct: 325 KAYGKARREEEA 336


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 42/360 (11%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++E M   G    +  Y  L+ A  +SG++D+A+    DMK    C+PD YTY+ILI+  
Sbjct: 208 VYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQ-KYCEPDAYTYTILIRMS 266

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  +         EM   G   + + YNT+I+  GK K  +++    S M+E GGC P+
Sbjct: 267 GRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIE-GGCQPN 325

Query: 256 IFTLNSMISAYGNSGNIEKME------------------------------------KWY 279
            FT +  +      G + ++                                     + +
Sbjct: 326 QFTYSITLDILAKEGQLHRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVSEAHNVFCQMW 385

Query: 280 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
           N +      A +  L +L  S    G   +   ++  M ++     V  YN+V    GK 
Sbjct: 386 NSYETGDRDAFVSMLEVLCNS----GKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKL 441

Query: 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +  S    D   +
Sbjct: 442 KQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITY 501

Query: 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           N +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      + A NL   MIA
Sbjct: 502 NSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIA 561



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 166/373 (44%), Gaps = 18/373 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A ++F  ++Q+ + +    T+T L+ M G+  +  +    F+ M+S G
Sbjct: 228 LDALAKSGMVDQAYQVFEDMKQK-YCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKG 286

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK---FHRF 201
              ++  Y  L+ A G++ ++D+    ++ M     C+P+ +TYSI +    K    HR 
Sbjct: 287 CALNLIAYNTLIEALGKNKMVDKVIFVLSKMIE-GGCQPNQFTYSITLDILAKEGQLHRL 345

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM---VESGGCHPDIFT 258
           + +  I        I      Y+ ++    K+    E  + F  M    E+G    D F 
Sbjct: 346 NEVLDICDRYMNKSI------YSYLVKSLSKSGHVSEAHNVFCQMWNSYETG--DRDAFV 397

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
             SM+    NSG   +     +     GV  D+   N++  + G+      + S+ D M+
Sbjct: 398 --SMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMK 455

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P + TYNI+I ++G+ G ++K    F+ M     KP+ ITY SL++   K G + 
Sbjct: 456 ANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLD 515

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   + ++++      D   ++ +I  +G++  V+    LFL M    C+P+ +T+  ++
Sbjct: 516 EAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILL 575

Query: 439 QAYNALGMTEAAQ 451
                 G T  A 
Sbjct: 576 DCLERHGKTAEAH 588



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 7/254 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM- 175
           ++ L+  L K     +A  +F  M +       D + +++     SG   EA   ++ M 
Sbjct: 361 YSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMP 420

Query: 176 -KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            K V+    DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+  
Sbjct: 421 EKGVAT---DVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVG 477

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             ++    F  M  +  C PD+ T NS+I+  G +G++++    + E    G   D+ T 
Sbjct: 478 LVDKASGLFEDM-NASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTY 536

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +IL + +G++   D   ++   M      P VVTYNI+++   + G   +  ++++ MK 
Sbjct: 537 SILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQ 596

Query: 355 RGMKPNSITYCSLV 368
           +G+ P+SIT CS++
Sbjct: 597 QGLTPDSIT-CSIL 609



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 2/188 (1%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           LGK KQ    + LF+ M ++G+ P +  Y  ++S+YG+ GL+D+A     DM + S CKP
Sbjct: 438 LGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNA-SSCKP 496

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV TY+ LI    K    D    +  EM   G      TY+ +I+ +GK+ K +   + F
Sbjct: 497 DVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLF 556

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M+  G C P++ T N ++      G   +  K Y      G+  D  T +IL +   R
Sbjct: 557 LDMIAEG-CIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSILERLESR 615

Query: 304 AGMYDKMR 311
           +    ++R
Sbjct: 616 SQRTVRIR 623



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 144/323 (44%), Gaps = 5/323 (1%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            E+ +  GL+ +   Y  ++ A+ +S  + + F    +M+       D++ Y++L+ +  
Sbjct: 174 LELAMKWGLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRR-KGYMLDIFGYNMLLDALA 232

Query: 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256
           K    D   ++  +M     E  A TY  +I   G+A K  +  S F  MV S GC  ++
Sbjct: 233 KSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMV-SKGCALNL 291

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
              N++I A G +  ++K+    ++    G + +  T +I      + G   ++  V+D 
Sbjct: 292 IAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDI 351

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
              R+   ++ +Y  ++++  K+GH+ +    F +M +     +   + S++     +G 
Sbjct: 352 CD-RYMNKSIYSY--LVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGK 408

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
            ++   +L  +    V  D   +N + SA G+   V  +  LF  MK     PD  T+  
Sbjct: 409 TLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNI 468

Query: 437 MIQAYNALGMTEAAQNLENKMIA 459
           MI +Y  +G+ + A  L   M A
Sbjct: 469 MISSYGRVGLVDKASGLFEDMNA 491



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 251 GCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
           G   D F+ N +++  +    +  +  +  +E    GV  +I T+N+L    G      K
Sbjct: 113 GFRHDAFSYNRILALLFRTRADPSEALRIVSEMERDGVSGNISTVNLLVGIGGGGVEVTK 172

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++   K        TY  +++   ++  + K  E +++M+ +G   +   Y  L+ 
Sbjct: 173 ---CLELAMKWGLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLD 229

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           A +K+G++ +   +   ++      D   +  +I   G+AG   K    F  M  + C  
Sbjct: 230 ALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCAL 289

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKMI 458
           + I + T+I+A     M +    + +KMI
Sbjct: 290 NLIAYNTLIEALGKNKMVDKVIFVLSKMI 318


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 178/369 (48%), Gaps = 15/369 (4%)

Query: 80  PVLEA----LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QA 133
           P ++A    LD  +K+ ++    K++G +  +    A     T   ++ G C+Q +  +A
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG---ASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193
             LF+ M+   + P+V +YT L+        + EA S    M++ S   P++YTY+ ++ 
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN-SGMLPNLYTYNTMMD 271

Query: 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGG 251
              K        ++  EM   G+  + VT+  +IDG  K    +EM S+   +++  S G
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFG 328

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+IF  N +I  Y  +GN+ +    ++E     +  D+ T +IL K        ++  
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M+K+ F P  VTYN +I+ + K G++EK  E   +M  +G++PN IT+ +L+  Y
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            KAG +     +  ++    ++ D   +  +I  + + G+ ++   L   M+E    P+ 
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508

Query: 432 ITFATMIQA 440
            T + +I  
Sbjct: 509 FTLSCLIDG 517



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 162/368 (44%), Gaps = 8/368 (2%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKL----MVMLGKCKQPEQASL--LFEVMLSDGLKPSV 149
           +A    GL+ +  W   +      +    MV+ G  K+    ++  ++  M++ G  P+V
Sbjct: 134 IAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNV 193

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y  L+    + G   +AF   ++M       P V  Y+ILI+      R    E +  
Sbjct: 194 VTYGTLIDGCCRQGDFLKAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFR 252

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   G+  +  TYNT++DGY K    ++    +  M+   G  P++ T   +I     +
Sbjct: 253 TMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLLPNVVTFGILIDGLCKT 311

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +    K+  +    GV  +I   N L   Y +AG   +  S+   ++K    P V TY
Sbjct: 312 DEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTY 371

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           +I+I+       +E+ +   ++MK +G  PN++TY +L+  Y K G + K   +  Q+  
Sbjct: 372 SILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  +   F+ +I  Y +AG +E    L+  M  +  +PD + +  +I  +   G T+ 
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 450 AQNLENKM 457
           A  L  +M
Sbjct: 492 AFRLHKEM 499



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 165/371 (44%), Gaps = 11/371 (2%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
            ++ ++   +F +L + +  +     F  L++   +    E+A  ++  M    + P++ 
Sbjct: 103 SRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQ 159

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
               ++    + G  D  +    DM +     P+V TY  LI  C +   F    ++  E
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVA-RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDE 218

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M    I  + V Y  +I G     +  E ES F  M  SG   P+++T N+M+  Y    
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSG-MLPNLYTYNTMMDGYCKIA 277

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTVV 327
           +++K  + Y E    G+  ++ T  IL     +    D+M S   F+     F   P + 
Sbjct: 278 HVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFGVVPNIF 334

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            YN +I+ + KAG++ +      +++   + P+  TY  L+        + + D +L+++
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
           +    + +   +N +I  Y + G++EK  E+   M E+   P+ ITF+T+I  Y   G  
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 448 EAAQNLENKMI 458
           EAA  L  +M+
Sbjct: 455 EAAMGLYTEMV 465



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 160/369 (43%), Gaps = 16/369 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   +Q  +  A ++F  + +++ +      +T L+  L    +  +A  +F  M + G
Sbjct: 200 IDGCCRQGDFLKAFRLFDEMIEKKIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSG 258

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P++  Y  ++  Y +   + +A     +M       P+V T+ ILI    K       
Sbjct: 259 MLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG-DGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K L +M+  G+  +   YN +IDGY KA    E  S  S  +E     PD+FT + +I 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE-IEKHEILPDVFTYSILIK 376

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                  +E+ +    E    G   +  T N L   Y + G  +K   V   M ++   P
Sbjct: 377 GLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            ++T++ +I+ + KAG +E     + +M  +G+ P+ + Y +L+  + K G   +   + 
Sbjct: 437 NIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLH 496

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT-------------MKERHCVPDN 431
           ++++ + +  +    +C+I    + G +    +LFL              +    C P++
Sbjct: 497 KEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNH 556

Query: 432 ITFATMIQA 440
           + +  +IQ 
Sbjct: 557 VMYTALIQG 565



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 15/203 (7%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  + E A  L+  M+  GL P V  YTAL+  + + G   EAF    +M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF-DLIEKILA------------EMSYLGIECSAVT 222
           +  +   P+V+T S LI    K  R  D I+  LA            E+       + V 
Sbjct: 500 QE-AGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVM 558

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           Y  +I G     +  +    FS M    G  PD+FT   +I  +  + ++  +     + 
Sbjct: 559 YTALIQGLCTDGRIFKASKFFSDM-RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI 617

Query: 283 NLMGVKADIQTLNILTKSYGRAG 305
             MG+  +     +L K Y  +G
Sbjct: 618 LKMGIIPNSSVYRVLAKGYEESG 640


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 172/388 (44%), Gaps = 50/388 (12%)

Query: 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS- 177
           +L+  L +  +P  A+ + E     G + +   Y ALV  Y ++GLL++A   +  M + 
Sbjct: 101 RLVRDLCRRGRPADAARVVEAC---GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAH 157

Query: 178 ---------------------VSD------------CKPDVYTYSILIKSCTKFHRFDLI 204
                                V+D            C PDV TY+IL+++  K   +   
Sbjct: 158 VQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQA 217

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            +++  M   G E + VTYN IID   +    ++     +++  S GC P+    N+++ 
Sbjct: 218 LELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSL-PSRGCKPNTVNYNTVLK 276

Query: 265 AYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            + +      +E+W +   ++          +  TLN++  +  R G+  K+   ++ M 
Sbjct: 277 GFCS------IERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMS 330

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           K      VVTYN VI    + G+++   E    M+  G KP+ +TY +++     A    
Sbjct: 331 KHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWE 390

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             + ++ ++  +D + D   FN IIS + Q G + +  E+F  M E+ C P++ T++T+I
Sbjct: 391 DAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTII 450

Query: 439 QAYNALGMTEAAQNLENKMIAMKENSGK 466
                 G  E A  L N+M     N+ K
Sbjct: 451 GGLTKAGKMEQALELLNEMANKGFNTDK 478



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 54/347 (15%)

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYL 214
           +SA    G LD A   +      S   PDV   + L++  C +    D    + A     
Sbjct: 71  LSALIHRGDLDAALRLVGS----SPRPPDVPLANRLVRDLCRRGRPADAARVVEA----C 122

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM---VESGGCHPDIFTLNSMISAYGNSGN 271
           G E +A TY  ++DGY +A   E+       M   V++       +  N +I A    G 
Sbjct: 123 GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASS----AYAHNPLIHALCERGR 178

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +       +     G   D+ T NIL ++  +   Y +   ++DFM+     P  VTYN+
Sbjct: 179 VADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNV 238

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY-------CS------------------ 366
           +I+   + G +++  E    +  RG KPN++ Y       CS                  
Sbjct: 239 IIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVREN 298

Query: 367 ----------LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
                     +++   + GL+ KV   L ++       +   +N +IS   + G+V+   
Sbjct: 299 CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSAL 358

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           EL   M+   C PD +T+ T+++   +    E A+ L   MI M +N
Sbjct: 359 ELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEEL---MIKMSQN 402



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 160/379 (42%), Gaps = 38/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K +   QA  L + M ++G +P+   Y  ++ A  + G +D+A   +N +
Sbjct: 200 TYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSL 259

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM------------------------ 211
            S   CKP+   Y+ ++K      R+   ++IL EM                        
Sbjct: 260 PS-RGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGL 318

Query: 212 -----------SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                      S  G   + VTYN +I G  +    +      S M +S GC PDI T N
Sbjct: 319 LQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNM-QSFGCKPDIVTYN 377

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           +++    ++   E  E+   + +      D  T N +   + + G+  +   V   M ++
Sbjct: 378 TVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEK 437

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P   TY+ +I    KAG +E+  E   +M ++G   + + Y  L  + +K   I +V
Sbjct: 438 GCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEV 496

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             ++ ++++S +   T  +N ++    + G  +   ++   M    C+PD  T+  +I+ 
Sbjct: 497 VQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEG 556

Query: 441 YNALGMTEAAQNLENKMIA 459
               G ++ A+ L +++ +
Sbjct: 557 LFYEGYSKEARELLSRLCS 575



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 120/263 (45%), Gaps = 3/263 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++ +L  E M   G   +V  Y A++S   + G +D A   +++M+S   CKPD+ TY+ 
Sbjct: 320 QKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFG-CKPDIVTYNT 378

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++K      R++  E+++ +MS         T+NTII  + +     +    F  M E G
Sbjct: 379 VLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKG 438

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C+P+  T +++I     +G +E+  +  NE    G   D +   +LT+S  +    +++
Sbjct: 439 -CNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKIEEV 496

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+  +Q     P  V YN V+    + G  +   +    M   G  P+  TY  L+  
Sbjct: 497 VQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEG 556

Query: 371 YSKAGLIMKVDSILRQVENSDVI 393
               G   +   +L ++ + DV+
Sbjct: 557 LFYEGYSKEARELLSRLCSRDVL 579


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 174/382 (45%), Gaps = 36/382 (9%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q  C T+  L+    +     +A  ++  +   G K  +  Y  L+ A  +   +D+ + 
Sbjct: 39  QMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYM 98

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
              DMK    C+PD YTY+I+I+   K  + D    +  EM+  G   + + YNT+I   
Sbjct: 99  VFKDMKR-KHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQAL 157

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS---AYGNSGNIEKMEKWYNEF----- 282
              +  ++    FS MVE+  C P+ FT + +++   A G  G ++++ +  N+F     
Sbjct: 158 ANNRMVDKTIFLFSKMVENN-CRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSI 216

Query: 283 --------NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM----------------- 317
                   + +G  ++   L     S+   G  D   S+++ +                 
Sbjct: 217 YAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIH 276

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +KR    TV+ YN V+   GK      + + ++KMK  G  P+  +Y  L+S++ +AG +
Sbjct: 277 EKRISTDTVM-YNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRV 335

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   I  ++ENS    D   FN +I+  G+ GD+++    F  M+E    PD +T++T+
Sbjct: 336 EEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTL 395

Query: 438 IQAYNALGMTEAAQNLENKMIA 459
           I+ +      E A  L ++M+A
Sbjct: 396 IECFGKTDKVEMACRLFDEMLA 417



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 152/354 (42%), Gaps = 34/354 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++ M GK  + +++  LF+ M   G  P++  Y  ++ A   + ++D+     + M
Sbjct: 114 TYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 173

Query: 176 KSVSDCKPDVYTYSI--------------------------------LIKSCTKFHRFDL 203
              ++C+P+ +T+S+                                L+++ +K      
Sbjct: 174 VE-NNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASE 232

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++   M     E     Y ++++    A K  E     S + E      D    N+++
Sbjct: 233 AHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKR-ISTDTVMYNTVL 291

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           SA G       +   Y +    G   DI + NIL  S+GRAG  ++   + + ++     
Sbjct: 292 SALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCK 351

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P ++++N +I   GK G I++    FK+M+  G+ P+ +TY +L+  + K   +     +
Sbjct: 352 PDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRL 411

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
             ++       +   +N ++    ++G   +  +L+  +K++   PD+IT+A +
Sbjct: 412 FDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 465



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 4/195 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  ++  LGK K+      L+E M  DG  P +  Y  L+S++G++G ++EA     +++
Sbjct: 287 YNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELE 346

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + S CKPD+ +++ LI    K    D       EM   G+    VTY+T+I+ +GK  K 
Sbjct: 347 N-SSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKV 405

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E     F  M+  G C P+I T N ++     SG   +    Y +    G+  D  T  +
Sbjct: 406 EMACRLFDEMLAEG-CSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAV 464

Query: 297 LTKSYGRAGMYDKMR 311
           L +   ++G + K+R
Sbjct: 465 LERL--QSGSHQKVR 477



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 137/364 (37%), Gaps = 41/364 (11%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G++ S+     L+  +G    ++  F    D+    D + + YTY  L+++  + +  + 
Sbjct: 5   GVRGSISTINILIGIFGGGADVERCF----DLVKKWDLQMNCYTYKCLLQAHLRSNNSNK 60

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++  E+   G +     YN ++D   K  K +++   F  M +   C PD +T   MI
Sbjct: 61  AFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDM-KRKHCEPDEYTYTIMI 119

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
              G  G  ++    + E    G   ++   N + ++     M DK   +   M +    
Sbjct: 120 RMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCR 179

Query: 324 PTVVTYNIV--------------------------------IETFGKAGHIEKMEEYFKK 351
           P   T++++                                + T  K GH  +    F  
Sbjct: 180 PNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCN 239

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M     + +   Y S++ +   AG   +   +L ++    +  DT  +N ++SA G+   
Sbjct: 240 MWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKK 299

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKK 467
              + +L+  MK+    PD  ++  +I ++   G  E A    + LEN        S   
Sbjct: 300 TSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNS 359

Query: 468 LIQC 471
           LI C
Sbjct: 360 LINC 363



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 113/279 (40%), Gaps = 36/279 (12%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G+  S  T N +I  +G      ++E  F  +V+      + +T   ++ A+  S 
Sbjct: 1   MERCGVRGSISTINILIGIFGGGA---DVERCFD-LVKKWDLQMNCYTYKCLLQAHLRSN 56

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N  K  + Y E    G K DI   N+L  +  +    D++  V   M+++   P   TY 
Sbjct: 57  NSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYT 116

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL-RQVEN 389
           I+I   GK G  ++    F++M  +G  PN I Y +++ A +   ++ K   +  + VEN
Sbjct: 117 IMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVEN 176

Query: 390 S--------DVILD------------------TPFFNCIISAY-----GQAGDVEKMGEL 418
           +         VIL+                    F N  I AY      + G   +   L
Sbjct: 177 NCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRL 236

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           F  M   H   D   + +M+++    G T  A +L +K+
Sbjct: 237 FCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKI 275


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 154/324 (47%), Gaps = 4/324 (1%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           + E+M ++G++ +V  YT LV +   +  + +  +  N+MK+ ++   DVY Y+ +I + 
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKA-NNVVGDVYLYTAVINAY 292

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHP 254
            +        K+L E    G+E +  TY  +I+G+ K  + E  E   + M   G G + 
Sbjct: 293 CRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQ 352

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
            IF  N+MI  Y   G ++   K       MGV+ DI T N L     R    D+ ++++
Sbjct: 353 IIF--NTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M +    P  VTY  +I    K G + +    F++M  +G  P+ +TY  ++  Y+K 
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G I + +   +++E    + D   +  ++  +   G V+   +LF  MK+R   P+ + +
Sbjct: 471 GSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAY 530

Query: 435 ATMIQAYNALGMTEAAQNLENKMI 458
             +I      G +EAA  L + M+
Sbjct: 531 TALISGLAKEGRSEAAFQLYDDML 554



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 171/357 (47%), Gaps = 9/357 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  ++QK      +I  ++ + +  +A   T+T L+  L   +   +   LF  M ++ 
Sbjct: 219 LDCYVRQKDDGRVQEILEIM-ENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANN 277

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +   V +YTA+++AY ++G +  A   +++    +  +P+  TY +LI    K  + +  
Sbjct: 278 VVGDVYLYTAVINAYCRAGNMRRAAKVLDECVG-NGVEPNERTYGVLINGFCKIGQMEAA 336

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
           E +LA+M   G+  + + +NT+IDGY +    ++     +AM E  G   DI+T N++  
Sbjct: 337 EMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAM-EKMGVELDIYTYNTLAC 395

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
                  +++ +   +    MGV  +  T   L   + + G   + R +   M ++   P
Sbjct: 396 GLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATP 455

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           +VVTYN++I+ + K G I + E + K+M+ +G  P+  TY SLV  +   G   KVD  L
Sbjct: 456 SVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNG---KVDVAL 512

Query: 385 RQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +  E        P    +  +IS   + G  E   +L+  M +   +PD+  ++ ++
Sbjct: 513 KLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 569



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 2/210 (0%)

Query: 250 GGCHPDIFTLNSMISAYG--NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           G C   +  L + +   G   SG ++   +  ++    GV  +    N L   Y R    
Sbjct: 169 GSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDD 228

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            +++ +++ M+      TV TY I++++   A  I K+E  F +MK   +  +   Y ++
Sbjct: 229 GRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAV 288

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++AY +AG + +   +L +   + V  +   +  +I+ + + G +E    L   M+ +  
Sbjct: 289 INAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGV 348

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKM 457
             + I F TMI  Y   GM + A  ++  M
Sbjct: 349 GLNQIIFNTMIDGYCRKGMVDDALKIKAAM 378



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 38/273 (13%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           S+++    K  R D   ++L +M   G+  +A+ YN+++D Y + K              
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQK-------------- 226

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
                              + G +++ +E   NE    G++A + T  IL  S   A   
Sbjct: 227 -------------------DDGRVQEILEIMENE----GIEATVGTYTILVDSLSTARDI 263

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
            K+ ++ + M+       V  Y  VI  + +AG++ +  +   +    G++PN  TY  L
Sbjct: 264 SKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVL 323

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           ++ + K G +   + +L  ++   V L+   FN +I  Y + G V+   ++   M++   
Sbjct: 324 INGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGV 383

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
             D  T+ T+      +   + A+ L + MI M
Sbjct: 384 ELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEM 416


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 161/381 (42%), Gaps = 37/381 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +  QA  LF  M   G+ PS   YT L+  + +    + A+  +  M
Sbjct: 103 TYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLM 162

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C P VY+Y  +I    K  + D   ++  EM   G +   VTYNT+I G    ++
Sbjct: 163 AS-RKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQR 221

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E +   + MVE+G   PD  T  ++I     +  I++    +      G   D+ T  
Sbjct: 222 LHEAKDLLTVMVENGF-QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHT 280

Query: 296 ILT---------------------------------KSYGRAGMYDKMRSVMDFMQKRFF 322
           +L                                  +  GR   +D+   ++  M +R  
Sbjct: 281 VLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV 340

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVTY    +  G      +    F++M  +G++P+ + Y  LV  + KA  +   + 
Sbjct: 341 PPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEK 400

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++R ++ S +  +   +N ++  + + G VE +GEL  TM  R   PD  T++T++    
Sbjct: 401 MVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLF 460

Query: 443 ALGMTEAAQNLENKMIAMKEN 463
            +G  +AA +  N  +AM + 
Sbjct: 461 MVGQADAAYSFLN--LAMSQG 479



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 148/360 (41%), Gaps = 43/360 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   L+ +L + ++ EQ  ++F  + S   KP+   Y  LV A  ++G +D+A STI +M
Sbjct: 2   TCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEM 61

Query: 176 ---KSVSD-----------CK----------------PDVYTYSILIKSCTKFHRFDLIE 205
              K V D           CK                PDV TY+ L+    K  R     
Sbjct: 62  AREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQAC 121

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +   M   GI  S VTY T+ID + K  +FE        M  S  C P +++  S+I+ 
Sbjct: 122 SLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMA-SRKCSPTVYSYCSIING 180

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
              +  +++  + + E  L G K D  T N L           + + ++  M +  F P 
Sbjct: 181 LCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPD 240

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
            +T+  +IE       I++    F+ M  +G  P+ +T+  LV   SK  ++ K+   L 
Sbjct: 241 KITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLV---SKLCILRKLRPALS 297

Query: 386 QVEN-----SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            V N       VIL TP F       G+    ++   L   M  R   P+ +T+    + 
Sbjct: 298 VVRNYPACPEAVILYTPIFR----ELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKG 353



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VT N +++   +A   E++   F+++  +  KPN+++YC LV A  + G I K  S + +
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +    ++ D   +N +I    +A  + +  E F TM E    PD +T+ T++      G 
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGR 116

Query: 447 TEAAQNLENKM 457
              A +L   M
Sbjct: 117 VAQACSLFGSM 127


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 159/321 (49%), Gaps = 4/321 (1%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  M+  G +P V  YT L++   ++G + +A    N M   S   PD    + L+    
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIR-SGVSPDNKACAALVVGLC 195

Query: 197 KFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
              + DL  +++AE +    ++ S V YN +I G+ KA + E+ E+  S M + G C PD
Sbjct: 196 HARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIG-CEPD 254

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T N +++ Y ++  +++ E    E    G++ D  + N L K + R    DK  + M 
Sbjct: 255 LVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMV 314

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
              +   F  VV+Y+ +IETF +A +  K    F++M+ +GM  N +TY SL+ A+ + G
Sbjct: 315 KEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREG 374

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                  +L Q+    +  D  F+  I+    ++G+V+K   +F  M E    PD I++ 
Sbjct: 375 NSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYN 434

Query: 436 TMIQAYNALG-MTEAAQNLEN 455
           ++I      G +TEA +  E+
Sbjct: 435 SLISGLCRSGRVTEAIKLFED 455



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 122 VMLGKCKQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +++G C    +  L +E++     S  +K S  VY AL+S + ++G +++A +  + M  
Sbjct: 190 LVVGLC-HARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSK 248

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           +  C+PD+ TY++L+      +     E ++AEM   GI+  A +YN ++  + +    +
Sbjct: 249 IG-CEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPD 307

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           +  +     +E  G   D+ + +++I  +  + N  K  + + E    G+  ++ T   L
Sbjct: 308 KCYNFMVKEMEPRG-FCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSL 366

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K++ R G     + ++D M +    P  + Y  +++   K+G+++K    F  M    +
Sbjct: 367 IKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEI 426

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P++I+Y SL+S   ++G + +   +   ++  +   D   F  II    +   +    +
Sbjct: 427 TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYK 486

Query: 418 LFLTMKERHCVPDNITFATMIQA 440
           ++  M ++    D     T+I+A
Sbjct: 487 VWDQMMDKGFTLDRDVSDTLIKA 509



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 38/308 (12%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y + ++   +SG++D A    ++M+  S  +   + Y+  I    +  RF+L E I  +M
Sbjct: 12  YRSRIANLVKSGMIDNAVQVFDEMRH-SSYRVFSFDYNRFIGVLVRESRFELAEAIYWDM 70

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             +G      TY+  I G  K KKF+ +++  S M E+ G  PDI+  N  +        
Sbjct: 71  KPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDM-ETLGFIPDIWAFNVYLDLLCRENK 129

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
                          V   +QT   + +  GR                    P VV+Y I
Sbjct: 130 ---------------VGFAVQTFFCMVQR-GRE-------------------PDVVSYTI 154

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENS 390
           +I    +AG +    E +  M   G+ P++    +LV     A  + +  + +  +++++
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSA 214

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V L T  +N +IS + +AG +EK   L   M +  C PD +T+  ++  Y    M + A
Sbjct: 215 RVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRA 274

Query: 451 QNLENKMI 458
           + +  +M+
Sbjct: 275 EGVMAEMV 282



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 119/274 (43%), Gaps = 4/274 (1%)

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           +TYS  I    K  +FDLI+ +L++M  LG       +N  +D   +  K      +F  
Sbjct: 80  FTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFC 139

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           MV+ G   PD+ +   +I+    +G +    + +N     GV  D +    L      A 
Sbjct: 140 MVQRGR-EPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHAR 198

Query: 306 MYDKMRSVM--DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
             D    ++  +    R    TVV YN +I  F KAG IEK E     M   G +P+ +T
Sbjct: 199 KVDLAYEMVAEEIKSARVKLSTVV-YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVT 257

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  L++ Y    ++ + + ++ ++  S + LD   +N ++  + +    +K     +   
Sbjct: 258 YNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEM 317

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           E     D ++++T+I+ +     T  A  L  +M
Sbjct: 318 EPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEM 351


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 173/377 (45%), Gaps = 27/377 (7%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           + ++ GLL Q          +T L+    K    E+A L F+ M   GL  +   +T L+
Sbjct: 181 SFQLLGLL-QDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLI 239

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI-------KSCTKFHRFDLIEKILA 209
           +   + GL  + F     MK ++   P++YTY+ L+       K C  F  FD       
Sbjct: 240 NGLFKKGLKKDGFDLFEKMK-INGLFPNLYTYNCLMNEYCGEGKICRAFDLFD------- 291

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM   G+E + VTYNT+I G  + ++  E E     M +     P++ T N++I  + + 
Sbjct: 292 EMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQM-KKAAVSPNLITYNTLIGGFCDV 350

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           GN++K     ++    G+   + T NIL + Y +AG +  +  +   M+ R   P+ VT 
Sbjct: 351 GNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTC 410

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR---- 385
            ++I+ + +   +EK  + +  M+  G+ P+   Y  L+      G + +   + R    
Sbjct: 411 TVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGE 470

Query: 386 -QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             VE SDVI     +N +I  Y +  +  +   L   M+ +  VP+  +++++I      
Sbjct: 471 MHVEPSDVI-----YNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKD 525

Query: 445 GMTEAAQNLENKMIAMK 461
           G  E A+ L +KMI ++
Sbjct: 526 GKWEEAEVLLDKMIELQ 542



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 162/380 (42%), Gaps = 71/380 (18%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A + F  M+  GL    +++ +L+ +  +S   ++A+   N++K     K DVY++ I
Sbjct: 110 DKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKE--RVKFDVYSFGI 167

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +IK C +    D   ++L  +  +G+  + V Y T+IDG  K    E     F  M E G
Sbjct: 168 MIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMG 227

Query: 251 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 276
                                             G  P+++T N +++ Y   G I +  
Sbjct: 228 LVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAF 287

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGR--------------------------------- 303
             ++E    GV+A++ T N L     R                                 
Sbjct: 288 DLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGF 347

Query: 304 --AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              G  DK  S++D ++     P++VTYNI+IE + KAG+ + + +  ++M+ RG+ P+ 
Sbjct: 348 CDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSK 407

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           +T   L+ AY +   + K   I   +E   ++ D   +  +I      G++++  +LF +
Sbjct: 408 VTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRS 467

Query: 422 MKERHCVPDNITFATMIQAY 441
           M E H  P ++ + TMI  Y
Sbjct: 468 MGEMHVEPSDVIYNTMIHGY 487



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 2/327 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  L K    +    LFE M  +GL P++  Y  L++ Y   G +  AF   ++M
Sbjct: 234 TFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEM 293

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     + +V TY+ LI    +  R    EK++ +M    +  + +TYNT+I G+     
Sbjct: 294 RE-RGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGN 352

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++  SS    ++S G  P + T N +I  Y  +GN + +     E    G+     T  
Sbjct: 353 LDK-ASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCT 411

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L  +Y R    +K   +   M+K    P V  Y ++I      G++++  + F+ M   
Sbjct: 412 VLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEM 471

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            ++P+ + Y +++  Y K     +   +LR++E   ++ +   ++ II    + G  E+ 
Sbjct: 472 HVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEA 531

Query: 416 GELFLTMKERHCVPDNITFATMIQAYN 442
             L   M E    P       + +A N
Sbjct: 532 EVLLDKMIELQLKPSASILNMISKAKN 558



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 140/302 (46%), Gaps = 9/302 (2%)

Query: 73  YKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQ 132
           + NL+    L  ++E   + K   A  +F  +R++   +A   T+  L+  + + ++  +
Sbjct: 264 FPNLYTYNCL--MNEYCGEGKICRAFDLFDEMRERG-VEANVVTYNTLIGGMCREERVWE 320

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  L + M    + P++  Y  L+  +   G LD+A S ++ +KS +   P + TY+ILI
Sbjct: 321 AEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKS-NGLSPSLVTYNILI 379

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
           +  +K   +  +  +  EM   GI  S VT   +ID Y + ++ E+    +S+M E  G 
Sbjct: 380 EGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSM-EKFGL 438

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PD++    +I      GN+++  K +     M V+      N +   Y +     +   
Sbjct: 439 VPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALR 498

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           ++  M+ +   P V +Y+ +I    K G  E+ E    KM    +KP++    S+++  S
Sbjct: 499 LLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSA----SILNMIS 554

Query: 373 KA 374
           KA
Sbjct: 555 KA 556


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 164/359 (45%), Gaps = 4/359 (1%)

Query: 103 LLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+   +  Q     +  ++  + K K   +A  L+  M+S G+ P V  Y+AL+S + 
Sbjct: 183 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFC 242

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
             G L++A    N M S  +  PDVYT+SIL+    K  R    + +LA M   GI+   
Sbjct: 243 ILGKLNDAIGLFNKMIS-EEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDV 301

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTY +++DGY   K+  + +S F+ M + GG   ++ + N MI+ +     +++    + 
Sbjct: 302 VTYCSLMDGYCLVKQVNKAKSIFNTMAQ-GGVTANVQSYNIMINGFCKIKKVDEAMNLFK 360

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E +   +  D+ T N L     ++G       ++D M  R      +TYN +++   K  
Sbjct: 361 EMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNH 420

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            ++K      KMK  G++P+  TY  L+    K G +    +I   +      +    + 
Sbjct: 421 QVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYT 480

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I  +      +K   L   M++  C+P+  T+  +I +       + A+ L  +MIA
Sbjct: 481 VMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIA 539



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++ Y+    T T L+  L    Q  QA    + +++ G   +   Y  L++   + G   
Sbjct: 119 KKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTS 178

Query: 167 EAFSTIN--DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
            A   +   D K V   +P+V  Y+ +I S  K    +    + +EM   GI    VTY+
Sbjct: 179 AALQLLRRVDGKLV---QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYS 235

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I G+    K  +    F+ M+ S   +PD++T + ++  +   G +++ +        
Sbjct: 236 ALISGFCILGKLNDAIGLFNKMI-SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMK 294

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+K D+ T   L   Y      +K +S+ + M +      V +YNI+I  F K   +++
Sbjct: 295 QGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDE 354

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
               FK+M  + + P+ +TY SL+    K+G I     ++ ++ +  V  D   +N I+ 
Sbjct: 355 AMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILD 414

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           A  +   V+K   L   MK+    PD  T+  +I      G  + AQN+
Sbjct: 415 ALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNI 463



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 135/301 (44%), Gaps = 11/301 (3%)

Query: 60  AIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK 119
           AI    K +S +   +++   +L  +D   K+ + + A  +  ++  +Q  +    T+  
Sbjct: 250 AIGLFNKMISEEINPDVYTFSIL--VDGFCKEGRVKEAKNVLAMM-MKQGIKPDVVTYCS 306

Query: 120 LMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           LM      KQ  +A  +F  M   G+  +V  Y  +++ + +   +DEA +   +M    
Sbjct: 307 LMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMH--- 363

Query: 180 DCK---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            CK   PDV TY+ LI    K  +     K++ EM   G+    +TYN+I+D   K  + 
Sbjct: 364 -CKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 422

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++  +  + M + G   PD++T   +I      G ++  +  + +  + G    + T  +
Sbjct: 423 DKAIALLTKMKDEG-IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTV 481

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           + + +    ++DK  +++  M+     P   TY I+I +  +    +  E+  ++M  RG
Sbjct: 482 MIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541

Query: 357 M 357
           +
Sbjct: 542 L 542



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/275 (18%), Positives = 124/275 (45%), Gaps = 1/275 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P ++ +  ++ S  K + +     +  EM + GI    VT+N +I+ + +        S 
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+ +++ G   P+  TL ++I      G I +   ++++   +G   +      L     
Sbjct: 114 FANILKKG-YEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLC 172

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G       ++  +  +   P VV YN +I++  K   + +  + + +M  +G+ P+ +
Sbjct: 173 KVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVV 232

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L+S +   G +     +  ++ + ++  D   F+ ++  + + G V++   +   M
Sbjct: 233 TYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMM 292

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++   PD +T+ +++  Y  +     A+++ N M
Sbjct: 293 MKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM 327



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 90/210 (42%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P IF    ++ +       +     + E    G+ +D+ T NIL   + + G      SV
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
              + K+ + P  +T   +I+     G I +   +  K+   G   N + Y +L++   K
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G       +LR+V+   V  +   +N II +  +   V +  +L+  M  +   PD +T
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           ++ +I  +  LG    A  L NKMI+ + N
Sbjct: 234 YSALISGFCILGKLNDAIGLFNKMISEEIN 263


>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
          Length = 550

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 154/347 (44%), Gaps = 7/347 (2%)

Query: 105 RQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164
           R Q  Y   C    + ++ L   +  E+A+ + ++M+  G  P +  Y  LV    + GL
Sbjct: 159 RNQIPYFPSCINLIRGLIKL---ESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGL 215

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L  A   +++M S+S C PD  TY+ +++       FD       +    G     +TY 
Sbjct: 216 LKTAIELLDEM-SLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYT 274

Query: 225 TIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
            +I+   K     + ME      +E  GC+PDI T NS+++     G  E          
Sbjct: 275 VLIELVCKHCGTVQAMEVLEDMAIE--GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLL 332

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
             G+  +  T N L  S    G +D++  ++  M      PTVVTYNI+I    K G ++
Sbjct: 333 SHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLD 392

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +   +F +M      P+ ITY +L++A  K G++ +   +L  + ++        +N +I
Sbjct: 393 RAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVI 452

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               + G +EK   L+  M ER   PD+IT  T+      L + E A
Sbjct: 453 DGLAKKGCMEKAMGLYGEMIERGFAPDDITHRTLFWGLFRLDLVEDA 499



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 2/257 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +QA   ++  L  G    +  YT L+    +     +A   + DM ++  C PD+ TY+ 
Sbjct: 252 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNS 310

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+    K  +++    I+  +   G+  + VTYNT++        ++E++     M  + 
Sbjct: 311 LVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTS 370

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              P + T N +I+     G +++   ++++        DI T N L  +  + GM D+ 
Sbjct: 371 Q-PPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEA 429

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  +      P ++TYNIVI+   K G +EK    + +M  RG  P+ IT+ +L   
Sbjct: 430 LHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEMIERGFAPDDITHRTLFWG 489

Query: 371 YSKAGLIMKVDSILRQV 387
             +  L+     IL+++
Sbjct: 490 LFRLDLVEDALVILKEM 506



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 3/235 (1%)

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I G  K +  E        MV SGG  PDI T N ++      G ++   +  +E +L 
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 229

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHIEK 344
           G   D  T N + +     G +D+         ++     ++TY ++IE   K  G ++ 
Sbjct: 230 GCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQA 289

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
           ME   + M   G  P+ +TY SLV+   K G       I+  + +  +  +T  +N ++ 
Sbjct: 290 ME-VLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLH 348

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +    G  +++ E+ L M      P  +T+  +I      G+ + A N  ++M++
Sbjct: 349 SLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVS 403


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 2/271 (0%)

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y++ +KS     +F LIE++  EM   G+E   +TY+TII    +   F++    F  M 
Sbjct: 202 YNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMY 261

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           ++G   PD  T ++++  Y   G +E++   Y      G K D     +L K +G AG Y
Sbjct: 262 KTG-LMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDY 320

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D +R V+  M+     P +V YN ++E  GKAG        F++M   G+ P++ T  +L
Sbjct: 321 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTAL 380

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RH 426
           V  Y KA        +  ++ ++   +D   +N ++S     G  E+  +LF  MK+  H
Sbjct: 381 VKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEH 440

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           C PD+ ++  M+  Y + G  + A  L ++M
Sbjct: 441 CRPDSWSYTAMLNIYGSGGNVDRAMQLFDEM 471



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 160/358 (44%), Gaps = 48/358 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++    +C   ++A   FE M   GL P    Y+A++  Y + G ++E  S + + 
Sbjct: 236 TYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLS-LYER 294

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              S  KPD   +++L K   +   +D I  +L EM  LG++ + V YNT+++  GKA K
Sbjct: 295 GRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 354

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                S F  MV S G  PD  TL +++  YG +       +W  +              
Sbjct: 355 PGLARSLFEEMVGS-GVIPDAKTLTALVKIYGKA-------RWARD-------------- 392

Query: 296 ILTKSYGRAGMYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
                     ++++MRS    MDF          + YN ++      G  E+ E+ F+ M
Sbjct: 393 -------ALELWERMRSNGWPMDF----------ILYNTLLSMCADLGLEEEAEKLFEDM 435

Query: 353 -KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
            K    +P+S +Y ++++ Y   G + +   +  ++    V ++     C+    G+A  
Sbjct: 436 KKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARR 495

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
           ++ + ++F    ER   PD+     ++   + +   E A++  NK++A  + +  KL+
Sbjct: 496 IDDLVKVFEVSLERGVKPDDRLCGCLL---SVVSFCEGAED-ANKVLACLQQANPKLV 549



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 2/240 (0%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K  K +  L ++   R   W +     F  L  M G+    +    + + M S G
Sbjct: 276 LDVYAKLGKVEEVLSLYERGRASGW-KPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLG 334

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           ++P++ VY  L+ A G++G    A S   +M   S   PD  T + L+K   K       
Sbjct: 335 VQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVG-SGVIPDAKTLTALVKIYGKARWARDA 393

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++   M   G     + YNT++         EE E  F  M +S  C PD ++  +M++
Sbjct: 394 LELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLN 453

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            YG+ GN+++  + ++E + +GV+ ++     L++  GRA   D +  V +   +R   P
Sbjct: 454 IYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKP 513



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 67/133 (50%)

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           +TY+ +I    +    +K  ++F++M   G+ P+ +TY +++  Y+K G + +V S+  +
Sbjct: 235 ITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYER 294

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
              S    D   F  +   +G+AGD + +  +   MK     P+ + + T+++A    G 
Sbjct: 295 GRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 354

Query: 447 TEAAQNLENKMIA 459
              A++L  +M+ 
Sbjct: 355 PGLARSLFEEMVG 367



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 315 DFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           ++++ +  FP   + YN+ +++       + +EE   +M   G++ ++ITY ++++   +
Sbjct: 187 NWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKR 246

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
             L  K      ++  + ++ D   ++ I+  Y + G VE++  L+   +     PD I 
Sbjct: 247 CNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIA 306

Query: 434 FATMIQAYNALG 445
           FA + + +   G
Sbjct: 307 FAVLGKMFGEAG 318


>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
 gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
          Length = 602

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 44/392 (11%)

Query: 78  PKPVLEALDEAIKQ-KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLL 136
           P+ V+       KQ KKW +  +I   LR Q W+      F  L+   GK     +A  +
Sbjct: 103 PRDVILGTLVRFKQLKKWNIVSEILEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERV 162

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
            + M   G +PSV   T L+ AYG+     +A +    M++ S  +P   TY I++KS  
Sbjct: 163 LKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQT-SGPEPSPVTYQIILKSLV 221

Query: 197 KFHRF--------DLI------------------------------EKILAEMSYLGIEC 218
           +  ++        DL+                               K+ A+MS   I  
Sbjct: 222 EGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERKIPL 281

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           S VT+N+++        ++E+ S +  M +  G  PD+ + + +I AYG +   E+    
Sbjct: 282 STVTFNSLMSF---ETDYKEVSSIYDQM-QRAGMKPDVVSYSLLIKAYGKARREEEALAV 337

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + E    GV+   ++ NIL  ++  +G+ D+  +V   M++    P + +Y  ++  +  
Sbjct: 338 FEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVN 397

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
           A  +   E++F+++K  G+KPN + Y +L+  YSK   + KV  +  ++    V  +   
Sbjct: 398 ASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTI 457

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           +  I+ A+G+  D       F  M+ R   PD
Sbjct: 458 YTTIMDAHGRNSDFGNAVIWFKEMEARGYPPD 489



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 2/182 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +++ L+   GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SGL+DEA +    M
Sbjct: 317 SYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAM 376

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +PD+ +Y+ ++ +       +  EK    +   G++ + V Y T++ GY K   
Sbjct: 377 RR-HRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNN 435

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E++   +  M    G  P+     +++ A+G + +      W+ E    G   D +  N
Sbjct: 436 VEKVMRVYERM-RIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKEMEARGYPPDQKAKN 494

Query: 296 IL 297
           IL
Sbjct: 495 IL 496



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++AYG  G+  + E+     N  G +  + +   L ++YGR   Y K  +V   MQ   
Sbjct: 146 LVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSG 205

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ VTY I++++  +    ++ E  F+ +   K    KP+   +  ++  Y KAG   
Sbjct: 206 PEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYA 265

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  Q+    + L T  FN ++S      D +++  ++  M+     PD ++++ +I
Sbjct: 266 QARKLFAQMSERKIPLSTVTFNSLMSF---ETDYKEVSSIYDQMQRAGMKPDVVSYSLLI 322

Query: 439 QAYNALGMTEAA 450
           +AY      E A
Sbjct: 323 KAYGKARREEEA 334


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 162/336 (48%), Gaps = 2/336 (0%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L K K   +A  L+  M +  + P+V  YT L+  +   G L EA + +N+MK + +  P
Sbjct: 219 LCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK-LKNINP 277

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DVYT+SILI +  K  +    + +LA M    ++   VTYN+++DGY    + +  +  F
Sbjct: 278 DVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVF 337

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
           ++M +SG   P + +   MI     +  +++    + E     V  +  T N L     +
Sbjct: 338 NSMAQSG-VTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCK 396

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           +G    +  ++D M+ R     V+TY+ +I+   K  H+++    FKKM  + ++P+  T
Sbjct: 397 SGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYT 456

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  L+    K G +     + + +      LD   +  +IS + +AG  ++   L   M+
Sbjct: 457 YTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKME 516

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +  C+P+ ITF  +I A       + A+ L  +MIA
Sbjct: 517 DNGCIPNAITFDIIICALFEKDENDKAEKLLREMIA 552



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 5/330 (1%)

Query: 132 QASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           Q +L F V+   L  G  P V   T L+      G + +A    +D+ ++ + + D  +Y
Sbjct: 119 QITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVAL-EFQLDRISY 177

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
             LI    K        +++  +    I+   V YN IID   K K   E  + +S M  
Sbjct: 178 GTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEM-N 236

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           +   +P++ T  ++I  +   G + +     NE  L  +  D+ T +IL  + G+ G   
Sbjct: 237 AKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMK 296

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
             + V+  M K +  P VVTYN +++ +     ++  +  F  M   G+ P   +Y  ++
Sbjct: 297 AAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMI 356

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
               K  ++ +  S+  ++++ +VI +T  FN +I    ++G +  + +L   M++R  +
Sbjct: 357 DGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQL 416

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMI 458
            D IT++++I A       + A  L  KMI
Sbjct: 417 ADVITYSSLIDALCKNCHLDQAIALFKKMI 446



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 131/287 (45%), Gaps = 3/287 (1%)

Query: 72  KYKNLWPKP-VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP 130
           K KN+ P       L +A+ ++    A KI   +  + + +    T+  L+       + 
Sbjct: 271 KLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEV 330

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           + A  +F  M   G+ P V  YT ++    ++ ++DEA S   +MK   +  P+  T++ 
Sbjct: 331 KHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKH-KNVIPNTITFNS 389

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI    K  R   +  ++ +M         +TY+++ID   K    ++  + F  M+ + 
Sbjct: 390 LIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI-TQ 448

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD++T   +I      G ++  ++ +    + G   DI+T  ++   + +AG++D+ 
Sbjct: 449 EIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEA 508

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            +++  M+     P  +T++I+I    +    +K E+  ++M  RG+
Sbjct: 509 LALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGL 555



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 88/204 (43%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P  F  N+++S+                 +  G+ +D+ TLNIL   +   G      SV
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +  + KR + P V+T   +I+     G ++K  ++   +     + + I+Y +L++   K
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
            G       ++R +E   +  D   +N II +  +   V +   L+  M  +   P+ +T
Sbjct: 187 IGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVT 246

Query: 434 FATMIQAYNALGMTEAAQNLENKM 457
           + T+I  +  +G    A  L N+M
Sbjct: 247 YTTLIYGFCIMGCLIEAVALLNEM 270



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%)

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           +VT NI+I  F   G I         +  RG  P+ IT  +L+      G + K      
Sbjct: 104 LVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHD 163

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            V   +  LD   +  +I+   + G+ +   +L   ++ER   PD + +  +I +     
Sbjct: 164 DVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNK 223

Query: 446 MTEAAQNLENKMIA 459
           +   A NL ++M A
Sbjct: 224 LVGEACNLYSEMNA 237


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 176/377 (46%), Gaps = 7/377 (1%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           P++ A  E+   K+   A+KIF  +R++   +    TF  L+   G   +PE++S L E+
Sbjct: 143 PMINAFCESGNVKE---AMKIFRKMREKG-CKPTASTFNALIKGFGIIGKPEESSKLLEI 198

Query: 140 M-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
           M   + +KP    Y  LV A+     +++A+  ++ M   +  KPDV TY+ + ++  + 
Sbjct: 199 MSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVG-AGLKPDVVTYNTIARAYARG 257

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
                  +++++M    +  +  T   ++DGY K     +    F   ++  G HP++F 
Sbjct: 258 KETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADA-LKFIYKMQGFGVHPNLFI 316

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            NS++  + +  + + +++        GVK D+ T + +  ++  AG+ +K   +   M 
Sbjct: 317 FNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMI 376

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           K    P    ++I+ + + +AG  +K E   + M   G  PN + + +++S +  A  + 
Sbjct: 377 KSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMATHGAHPNVVMFTTIISGWCSAAKME 436

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
               +  ++   DV  +   F  +I  YG+A +  K  EL   M+E   +P   T   + 
Sbjct: 437 DALRVYDRMCRMDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEMGVLPRKNTVQLVA 496

Query: 439 QAYNALGMTEAAQNLEN 455
            A+ A+G    A+ + N
Sbjct: 497 DAWRAIGFINEAKRILN 513



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 162/355 (45%), Gaps = 10/355 (2%)

Query: 109 WYQARCQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           W    CQT    TKLM  L +  +P++   + + +  +G +P++  YT +++A      L
Sbjct: 60  WGNDGCQTVRSRTKLMKTLIERGKPQEVHSITKGLTEEGHRPTLVTYTTVLAAL----TL 115

Query: 166 DEAFSTIN-DMKSV--SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222
            + F +I   +K V  +  +PD   ++ +I +  +        KI  +M   G + +A T
Sbjct: 116 QKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTAST 175

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           +N +I G+G   K EE       M       PD  T N ++ A+ N  NIEK     +  
Sbjct: 176 FNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRM 235

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G+K D+ T N + ++Y R     +   ++  MQ     P V T  IV++ + K G++
Sbjct: 236 VGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNM 295

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
               ++  KM+  G+ PN   + SL+  +        VD  L  ++   V  D   ++ I
Sbjct: 296 ADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTI 355

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++A+  AG +EK  E+F  M +    PDN  F+ + + Y   G  + A+ L   M
Sbjct: 356 MNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAM 410



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 2/181 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+KP V  Y+ +++A+  +GL+++      DM   S  +PD + +SIL K   +      
Sbjct: 344 GVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIK-SGIEPDNHAFSILAKGYVRAGEPKK 402

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
            E +L  M+  G   + V + TII G+  A K E+    +  M       P++ T  ++I
Sbjct: 403 AEALLEAMATHGAHPNVVMFTTIISGWCSAAKMEDALRVYDRMCRMD-VQPNLNTFETLI 461

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
             YG +    K E+       MGV     T+ ++  ++   G  ++ + +++  Q     
Sbjct: 462 WGYGEANEPWKAEELLQIMEEMGVLPRKNTVQLVADAWRAIGFINEAKRILNDDQSSVLI 521

Query: 324 P 324
           P
Sbjct: 522 P 522



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 1/170 (0%)

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +++   L K+    G   ++ S+   + +    PT+VTY  V+         + +    K
Sbjct: 68  VRSRTKLMKTLIERGKPQEVHSITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLK 127

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           K++  G++P+SI +  +++A+ ++G + +   I R++           FN +I  +G  G
Sbjct: 128 KVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIG 187

Query: 411 DVEKMGELFLTM-KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             E+  +L   M +E +  PD+ T+  ++QA+      E A  + ++M+ 
Sbjct: 188 KPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVG 237


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 166/352 (47%), Gaps = 2/352 (0%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Q +Q    ++  L+  L K  + +  + L   +    +KP V +Y  ++++  ++ LL +
Sbjct: 156 QGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGD 215

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A    ++M  V    PDV TY+ LI              +L EM    I  +  T+N +I
Sbjct: 216 ACDVYSEM-IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILI 274

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           D   K  K +E +   + M+++    PD+FT NS+I  Y     ++  +  +      GV
Sbjct: 275 DALSKEGKMKEAKILLAVMMKAC-IKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGV 333

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+Q    +     +  M D+  S+ + M+ +   P +VTYN +I+   K  H+E+   
Sbjct: 334 TPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIA 393

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             K+MK +G++P+  +Y  L+    K+G +     I +++      L+   +  +I+   
Sbjct: 394 LCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLC 453

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +AG  ++  +L   M+++ C+PD +TF  +I+A       + A+ +  +MIA
Sbjct: 454 KAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIA 505



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 155/325 (47%), Gaps = 4/325 (1%)

Query: 103 LLRQQQWYQARCQT--FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+ + +  +     +  ++  L K K    A  ++  M+  G+ P V  YT L+  + 
Sbjct: 184 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 243

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
             G L EAFS +N+MK + +  P+V T++ILI + +K  +    + +LA M    I+   
Sbjct: 244 IMGHLKEAFSLLNEMK-LKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDV 302

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
            TYN++IDGY    + +  +  F +M + G   PD+    +MI+    +  +++    + 
Sbjct: 303 FTYNSLIDGYFLVDEVKHAKYVFYSMAQRG-VTPDVQCYTNMINGLCKTKMVDEAMSLFE 361

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E     +  DI T N L     +    ++  ++   M+++   P V +Y I+++   K+G
Sbjct: 362 EMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSG 421

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +E  +E F+++  +G   N   Y  L++   KAG   +   +  ++E+   + D   F+
Sbjct: 422 RLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFD 481

Query: 401 CIISAYGQAGDVEKMGELFLTMKER 425
            II A  +  + +K  ++   M  R
Sbjct: 482 IIIRALFEKDENDKAEKILREMIAR 506



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 6/244 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L K  + ++A +L  VM+   +KP V  Y +L+  Y    L+DE        
Sbjct: 269 TFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYF---LVDEVKHAKYVF 325

Query: 176 KSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            S++     PDV  Y+ +I    K    D    +  EM +  +    VTYN++IDG  K 
Sbjct: 326 YSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKN 385

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
              E   +    M E G   PD+++   ++     SG +E  ++ +      G   ++  
Sbjct: 386 HHLERAIALCKRMKEQG-IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHA 444

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
             +L     +AG +D+   +   M+ +   P  VT++I+I    +    +K E+  ++M 
Sbjct: 445 YTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMI 504

Query: 354 HRGM 357
            RG+
Sbjct: 505 ARGL 508



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 7/278 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 239
           PD+ T SILI          L   + A +   G   +A+T NT+I G    G+ KK    
Sbjct: 90  PDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKK---- 145

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F   + + G   D  +  ++I+    +G  + + +   +     VK D+   N +  
Sbjct: 146 ALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIN 205

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
           S  +  +      V   M  +   P VVTY  +I  F   GH+++      +MK + + P
Sbjct: 206 SLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINP 265

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           N  T+  L+ A SK G + +   +L  +  + +  D   +N +I  Y    +V+    +F
Sbjct: 266 NVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVF 325

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +M +R   PD   +  MI       M + A +L  +M
Sbjct: 326 YSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEM 363



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 117/260 (45%), Gaps = 3/260 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P  + ++ ++ S      +  +  +  +    GI     T + +I+ +          S 
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F+ +++ G  HP+  TLN++I      G I+K   ++++    G + D  +   L     
Sbjct: 115 FANILKRGF-HPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G    +  ++  ++     P VV YN +I +  K   +    + + +M  +G+ P+ +
Sbjct: 174 KTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVV 233

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L+  +   G + +  S+L +++  ++  +   FN +I A  + G + K  ++ L +
Sbjct: 234 TYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM-KEAKILLAV 292

Query: 423 KERHCV-PDNITFATMIQAY 441
             + C+ PD  T+ ++I  Y
Sbjct: 293 MMKACIKPDVFTYNSLIDGY 312



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 36/235 (15%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
           +N I+      K +  + S F    E  G  PD+ TL+ +I+ + +  +I          
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQF-EPNGITPDLCTLSILINCFCHQAHI---------- 108

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
                          T ++          SV   + KR F P  +T N +I+     G I
Sbjct: 109 ---------------TLAF----------SVFANILKRGFHPNAITLNTLIKGLCFRGEI 143

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           +K   +  ++  +G + + ++Y +L++   K G    V  +LR++E   V  D   +N I
Sbjct: 144 KKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTI 203

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           I++  +   +    +++  M  +   PD +T+ T+I  +  +G  + A +L N+M
Sbjct: 204 INSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEM 258



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 72  KYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ 129
           K+KN+ P  V     +D   K    + A+ +   +++Q   Q    ++T L+  L K  +
Sbjct: 364 KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQ-GIQPDVYSYTILLDGLCKSGR 422

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
            E A  +F+ +L+ G   +V  YT L++   ++G  DEA    + M+    C PD  T+ 
Sbjct: 423 LEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMED-KGCMPDAVTFD 481

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGI 216
           I+I++  +    D  EKIL EM   G+
Sbjct: 482 IIIRALFEKDENDKAEKILREMIARGL 508


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 167/372 (44%), Gaps = 4/372 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           IK +K + A      +R+ ++  A    +T L+  L   +  +    LF+ M   G   +
Sbjct: 176 IKSRKLREAFTFIQTMRKLKFRPAF-SAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V ++T L+  + + G +D A S +++MKS S  +PDV  Y++ I    K  + D+  K  
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNS-LEPDVVLYNVCIDCFGKAGKVDMAWKXF 293

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            EM   G+    VTY ++I    KA +  E    F  M ++    P  +  N+MI  YG 
Sbjct: 294 HEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-PCAYAYNTMIMGYGM 352

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G  E            G    + + N +    GR G  D+     + M+K    P + T
Sbjct: 353 AGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLST 411

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YNI+I+   KAG +E        MK  G+ PN IT   +V    KA  +    SI   ++
Sbjct: 412 YNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLD 471

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +     D   +  +I   G+ G V++  +L+  M + + +P+ + + ++I+ +   G  E
Sbjct: 472 HKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 449 AAQNLENKMIAM 460
               + N+M+ +
Sbjct: 532 DGHKIYNEMLRL 543



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 173/421 (41%), Gaps = 71/421 (16%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           Q+  Y      FT L+ +  +  + + A  L + M S+ L+P V +Y   +  +G++G +
Sbjct: 227 QELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKV 286

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           D A+   ++MK+      DV TY+ +I    K  R +   ++   M        A  YNT
Sbjct: 287 DMAWKXFHEMKANGLVLDDV-TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE---- 281
           +I GYG A KFE+  S         GC P + + N ++S  G  G +++  K + E    
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQ-RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKD 404

Query: 282 -------FNLM-----------------------GVKADIQTLNILTKSYGRAGMYDKMR 311
                  +N+M                       G+  ++ T+NI+     +A   D   
Sbjct: 405 AIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDAC 464

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           S+ + +  +   P  VTY  +IE  G+ G +++  + +++M      PN++ Y SL+  +
Sbjct: 465 SIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNF 524

Query: 372 SK-----------------------------------AGLIMKVDSILRQVENSDVILDT 396
            K                                   AG I K  ++ ++++N   I D 
Sbjct: 525 FKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDA 584

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +  +I    +AG   +  ELF TMKE+ CV D   + T+I  +   G    A  L  +
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644

Query: 457 M 457
           M
Sbjct: 645 M 645



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 159/352 (45%), Gaps = 6/352 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPS 148
           K  +   A+++F  + Q +  Q  C      M+M  G   + E A  L E     G  PS
Sbjct: 317 KADRLNEAVELFEHMDQNK--QVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  Y  ++S  G+ G +DEA     +MK   D  P++ TY+I+I    K  + +    + 
Sbjct: 375 VVSYNCILSCLGRKGQVDEALKKFEEMKK--DAIPNLSTYNIMIDMLCKAGKLETALVVR 432

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   G+  + +T N ++D   KA++ ++  S F  + +   C PD  T  S+I   G 
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHKTCRPDAVTYCSLIEGLGR 491

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G +++  K Y +        +      L +++ + G  +    + + M +    P ++ 
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            N  ++   KAG IEK    F+++K+ G  P++ +Y  L+    KAG   +   +   ++
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
               +LDT  +N +I  + ++G V K  +L   MK +   P  +T+ ++I  
Sbjct: 612 EQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 163/360 (45%), Gaps = 37/360 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++ ML K  + E A ++ + M   GL P+V     +V    ++  LD+A S    +
Sbjct: 411 TYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL 470

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              + C+PD  TY  LI+   +  R D   K+  +M       +AV Y ++I  + K  +
Sbjct: 471 DHKT-CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    ++ M+  G C PD+  LN+ +     +G IEK    + E   +G   D ++  
Sbjct: 530 KEDGHKIYNEMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 296 IL----------------------------TKSYG-------RAGMYDKMRSVMDFMQKR 320
           IL                            T++Y        ++G  +K   +++ M+ +
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              PTVVTY  VI+   K   +++    F++ K +G++ N + Y SL+  + K G I + 
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             I+ ++    +  +   +NC++ A  +A ++ +    F +MK+  C P+ IT++ +I  
Sbjct: 709 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 2/302 (0%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K  + E+   LF+ + + G  P    YT L+    ++G   EA+     MK    C  D 
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE-QGCVLDT 619

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
             Y+ +I    K  + +   ++L EM   G E + VTY ++IDG  K  + +E    F  
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
             +S G   ++   +S+I  +G  G I++      E    G+  ++ T N L  +  +A 
Sbjct: 680 -AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +       M+     P  +TY+I+I    K     K   ++++M+ +G KPN  TY 
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +++S  +KAG I++ D++  + +    + D+  +N II     A        LF   + +
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 426 HC 427
            C
Sbjct: 859 GC 860



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 1/264 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y+ L+    +  +F+ +E+IL EMS  G   S  T   I+  + K++K  E   +F   
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLRE-AFTFIQT 190

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           +      P      ++I A   S + + M   + +   +G   ++     L + + R G 
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D   S++D M+     P VV YN+ I+ FGKAG ++   + F +MK  G+  + +TY S
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTS 310

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++    KA  + +   +   ++ +  +     +N +I  YG AG  E    L    + + 
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 427 CVPDNITFATMIQAYNALGMTEAA 450
           C+P  +++  ++      G  + A
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEA 394



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +T L+    KC + E    ++  ML  G  P + +    +    ++G +++  +   ++
Sbjct: 516 VYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEI 575

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K++    PD  +Y+ILI    K        ++   M   G       YNT+IDG+ K+ K
Sbjct: 576 KNLGFI-PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +       M ++ G  P + T  S+I        +++    + E    G++ ++   +
Sbjct: 635 VNKAYQLLEEM-KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYS 693

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   +G+ G  D+   +M+ + ++   P V T+N +++   KA  I +    F+ MK  
Sbjct: 694 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDL 753

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN ITY  L+    K     K     ++++      +   +  +IS   +AG++ + 
Sbjct: 754 KCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEA 813

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             LF   KE+  V D+  +  +I+ 
Sbjct: 814 DTLFEKFKEKGGVADSAIYNAIIEG 838



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 2/188 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+   GK  + ++A L+ E ++  GL P+V  +  L+ A  ++  + EA      MK
Sbjct: 692 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +  C P+  TYSILI    K  +F+       EM   G + +  TY T+I G  KA   
Sbjct: 752 DLK-CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNI 810

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E ++ F    E GG   D    N++I    N+       + + E  L G     +T  +
Sbjct: 811 VEADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVV 869

Query: 297 LTKSYGRA 304
           L  S  +A
Sbjct: 870 LLDSLHKA 877



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 44/276 (15%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  + ++A +LFE   S G++ +V +Y++L+  +G+ G +DEA+  + ++
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKA 233
                  P+VYT++ L+ +  K    ++ E ++   S   ++C+   +TY+ +I G  K 
Sbjct: 716 MQ-KGLTPNVYTWNCLLDALVKAE--EISEALVCFQSMKDLKCTPNYITYSILIHGLCKI 772

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +KF +    +  M +  G  P++FT  +MIS    +GNI + +  + +F   G  AD   
Sbjct: 773 RKFNKAFVFWQEM-QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD--- 828

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
                                              YN +IE    A         F++ +
Sbjct: 829 --------------------------------SAIYNAIIEGLSNANRASDAYRLFEEAR 856

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMK---VDSILRQ 386
            +G    + T   L+ +  KA  I +   V ++LR+
Sbjct: 857 LKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAVLRE 892


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 8/342 (2%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+   E A  L   M+ +G+ P+V  Y+ ++++   SG ++ AF+    M  +  C 
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQM-FLRGCD 311

Query: 183 PDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
            +++T++ LIK C  F R  L E   +   M   G E + V YNT+I G       EE  
Sbjct: 312 ANIHTFTPLIKGC--FMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                M  SG C P++ T + +I  +  SG++    + +N     G + ++ T   +   
Sbjct: 370 QVCDQMQRSG-CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             +  M+D+  S+++ M      P  +T+N  I+     G +E   +  ++M+  G  PN
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
             TY  L+ A  +     +   + +++E  ++  +   +N ++  + +AG + +  +LF 
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
               R   PD+IT+ TMI AY   G  + A  L  ++ +MKE
Sbjct: 549 KALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 160/360 (44%), Gaps = 16/360 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD  + + K+Q+   ++  +++         T+  L+  L K  + + A  LF  M + G
Sbjct: 151 LDALLSENKFQMINPLYTNMKKDGLI-PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG 209

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    YT +VS+  ++G +D+A             KP V  Y+ LI    K  R ++ 
Sbjct: 210 CPPDAVTYTTMVSSLCKAGKIDDARELAGRF------KPSVPVYNALIDGMCKEGRIEVA 263

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            K+L EM   G++ + V+Y+ II+    +   E   + F+ M    GC  +I T   +I 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR-GCDANIHTFTPLIK 322

Query: 265 AYGNSGNI-EKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                G + E ++ W     LM   G + ++   N L       G  ++   V D MQ+ 
Sbjct: 323 GCFMRGKLYEALDLW----KLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P V TY+I+I+ F K+G +    E + +M   G +PN +TY  +V    K  +  + 
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +S++ ++       +T  FN  I      G VE   +L   M+   C+P+  T+  ++ A
Sbjct: 439 NSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 15/331 (4%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN----DMKSVSDCKPDVY 186
           EQA  +F  +   G KP+V +Y  L+ A     L +  F  IN    +MK      P+V+
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDAL----LSENKFQMINPLYTNMKK-DGLIPNVF 180

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY+IL+K+  K  R D   K+  EMS  G    AVTY T++    KA K ++      A 
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD------AR 234

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
             +G   P +   N++I      G IE   K   E    GV  ++ + + +  S   +G 
Sbjct: 235 ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            +   ++   M  R     + T+  +I+     G + +  + +K M   G +PN + Y +
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+      G + +   +  Q++ S  + +   ++ +I  + ++GD+    E +  M    
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           C P+ +T+  M+       M + A +L  KM
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 6/272 (2%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY ++I+   +    D+++ IL +M   GI C    +  II+GY +    E+    F  +
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
            E G C P +   N ++ A  +    + +   Y      G+  ++ T NIL K+  +   
Sbjct: 136 GEFG-CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR 194

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D    +   M  +   P  VTY  ++ +  KAG I+   E   + K     P+   Y +
Sbjct: 195 VDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNA 249

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    K G I     +L ++ ++ V  +   ++CII++   +G+VE    LF  M  R 
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           C  +  TF  +I+     G    A +L   MI
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMI 341



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 7/189 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF   +  L    + E A  L E M   G  P++  Y  L+ A  +    +EAF    ++
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GK 232
           ++  + +P++ TY+ ++   ++        ++  +    G    ++TYNT+I  Y   GK
Sbjct: 516 EA-RNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGK 574

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            K   ++    S+M E    HPDI T  S+I    N  NIE+   + ++    G+  +  
Sbjct: 575 VKIAAQLVERVSSMKEW---HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFA 631

Query: 293 TLNILTKSY 301
           T N L + +
Sbjct: 632 TWNALVRCF 640



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 3/172 (1%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           R E+A+K +E+        N+      E LD   +  K++ A  +F  +  +   Q    
Sbjct: 469 RVEWAMKLLERMQGHGCLPNI--TTYNELLDALFRMNKYEEAFGLFQEIEARN-LQPNLV 525

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++    +     +A  LF   L  G  P    Y  ++ AY + G +  A   +  +
Sbjct: 526 TYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
            S+ +  PD+ TY+ LI     +   +     L +    GI  +  T+N ++
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 170/374 (45%), Gaps = 40/374 (10%)

Query: 122 VMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           +M G CKQ +  S L  F+ M  +G+ P+   Y  ++    ++G +D+A+   N MK+  
Sbjct: 335 LMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKN-K 393

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           D  P V+  + LI+   K    +   K+  E    GI  +  TYN+++    K  K  E 
Sbjct: 394 DISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA-NVFTYNSLLSWLCKEGKMSEA 452

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
            S +  MV  G   P + + N+MI  +   G+++     + E    G+K ++ T ++L  
Sbjct: 453 CSIWEKMVRKG-VRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMD 511

Query: 300 SYGRAG-------MYDKMR----SVMDFM-----------------QKRF-------FFP 324
            Y + G       +YD+MR    +  DF                  Q R        F P
Sbjct: 512 GYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIP 571

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           T +TYN +I+ F K G +      + +M   G+ PN  TY +L++ + K+  +     ++
Sbjct: 572 TCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVM 631

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            +++N  + LD   +  +I  + + GD+    +L   ++E    P+ + +++MI  +  L
Sbjct: 632 DEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKL 691

Query: 445 GMTEAAQNLENKMI 458
              EAA +L  +MI
Sbjct: 692 QNMEAALHLHKRMI 705



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 154/346 (44%), Gaps = 10/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +  +A  ++E M+  G++PSV  Y  ++  + Q G +D A     +M
Sbjct: 435 TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEM 494

Query: 176 KSVSDCKPDVYTYSILI----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                 KP++ TYS+L+    K     + F L +++  E     I  S  T N II+G  
Sbjct: 495 LE-KGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGE----NIAPSDFTCNIIINGLC 549

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           KA +  E +     +V+ G   P   T N +I  +   G++      Y E   +GV  ++
Sbjct: 550 KAGRTSESQDRLKKLVQEGFI-PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNV 608

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T   L   + ++   D    VMD M+ +     V  Y  +I+ F + G +    +   +
Sbjct: 609 FTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSE 668

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           ++  G+ PN + Y S++S + K   +     + +++ N  +  D   +  +IS   + G 
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGK 728

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +    EL+  M  +  +PD IT++ +I      G  E AQ +   M
Sbjct: 729 LLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDM 774



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 154/339 (45%), Gaps = 4/339 (1%)

Query: 122 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++LG C+Q +   A+ +F  ML  GLKP++  Y+ L+  Y + G  + AF   + M+   
Sbjct: 474 MILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRG-E 532

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           +  P  +T +I+I    K  R    +  L ++   G   + +TYN IIDG+ K       
Sbjct: 533 NIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSA 592

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
            + ++ M + G   P++FT  ++I+ +  S N++   K  +E    G++ D+     L  
Sbjct: 593 LAVYTEMCKIG-VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALID 651

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            + R G       ++  +Q+    P  V Y+ +I  F K  ++E      K+M + G+  
Sbjct: 652 GFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPC 711

Query: 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +   Y +L+S   K G ++    +  ++    ++ D   ++ +I      G +E   ++ 
Sbjct: 712 DLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKIL 771

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             M  +   P    + T+I  +   G  + A  L N+M+
Sbjct: 772 EDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEML 810



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 136/314 (43%), Gaps = 4/314 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FGL  + +        FT  +++ G CK  +  ++    + ++ +G  P+   Y  ++  
Sbjct: 523 FGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDG 582

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G ++ A +   +M  +    P+V+TY+ LI    K +  DL  K++ EM   GIE 
Sbjct: 583 FVKEGSVNSALAVYTEMCKIG-VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIEL 641

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
               Y  +IDG+ +           S + E G   P+    +SMIS +    N+E     
Sbjct: 642 DVTVYCALIDGFCRKGDMVNASQLLSELQEVG-LSPNKVVYSSMISGFRKLQNMEAALHL 700

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +      G+  D+Q    L     + G       +   M  +   P ++TY+++I     
Sbjct: 701 HKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCN 760

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +E  ++  + M  + M P    Y +L++ + K G + +   +  ++ +  ++ D   
Sbjct: 761 KGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTT 820

Query: 399 FNCIISAYGQAGDV 412
           ++ +++   + G++
Sbjct: 821 YDILVNGKVKDGNL 834



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 152/383 (39%), Gaps = 38/383 (9%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           +++  + F  L+    K K+   A   F  ++   + P + V    +S   ++ ++ EA 
Sbjct: 150 FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREAR 209

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
              N M S    K D  T S++I++  +  + +  E    E    G+E  A  Y+ +I+ 
Sbjct: 210 DVYNKMAS-KGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEA 268

Query: 230 YGKAKKFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
             K             M + G   H  IFT   +I      G + +  K   E    G  
Sbjct: 269 VCKKPDSVAALGLLREMRDKGWVPHEVIFT--RVIGVCMKQGKMLEAVKVKGEMLSCGKP 326

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++     L K Y + G  D    + D M +    P  VTY ++IE   K G+++K  E 
Sbjct: 327 MNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEI 386

Query: 349 FKKMKHRGMKP----------------------------------NSITYCSLVSAYSKA 374
           + +MK++ + P                                  N  TY SL+S   K 
Sbjct: 387 YNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKE 446

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G + +  SI  ++    V      +N +I  + Q GD++    +F+ M E+   P+ IT+
Sbjct: 447 GKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITY 506

Query: 435 ATMIQAYNALGMTEAAQNLENKM 457
           + ++  Y   G TE A  L ++M
Sbjct: 507 SVLMDGYFKKGDTEYAFGLYDRM 529


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 171/367 (46%), Gaps = 2/367 (0%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           + K   A+ +F  L +++  +     +  +M  L K    E+   L  +M     KP V 
Sbjct: 145 ENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVR 204

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            Y+ ++ A  +   LD A + +N+MK   +  P+++TY+ LI    K  +++ ++ +L+E
Sbjct: 205 TYSIVIDALCKDINLDAAINLLNEMKQ-KNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSE 263

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M  L I  +  T++ +IDG  K  K E+ +     M+E G   PDI T ++++  Y   G
Sbjct: 264 MVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKG-VEPDIITYSAIMDGYCLRG 322

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +++  + +N     G+K +I + +IL   Y +     K   +   + ++   P  VTY+
Sbjct: 323 QVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYS 382

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++    + G I   ++ F +M   G  P+   + +L+  Y K GL+ +   +  ++E +
Sbjct: 383 TILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERN 442

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               +  F+  +I+   +   V +   +F  +     +PD  T+  MI  +   G+ +  
Sbjct: 443 REDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEV 502

Query: 451 QNLENKM 457
           + +  KM
Sbjct: 503 KGILRKM 509



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 142/320 (44%), Gaps = 51/320 (15%)

Query: 100 IFGLLRQQQWYQAR--------------CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           I GL +  QW + +                TF+ L+  L K  + E A  +   M+  G+
Sbjct: 245 IDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGV 304

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P +  Y+A++  Y   G +D A    N ++     KP++++YSILI    K        
Sbjct: 305 EPDIITYSAIMDGYCLRGQVDRARRVFNVLRD-KGIKPNIFSYSILINGYCKKKNLAKAM 363

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++  E+S  G++   VTY+TI+ G  +  +  + +  F  M+  G   PDI   ++++  
Sbjct: 364 QLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPT-PDICLHSTLLFG 422

Query: 266 YGNSGNIE-------KMEKWYNEFNL----------------------------MGVKAD 290
           Y   G +E       K+E+   + N+                            +G+  D
Sbjct: 423 YFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPD 482

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           ++T N++   + R G++D+++ ++  M+        +TYN++++ F ++  I ++  + K
Sbjct: 483 VRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMK 542

Query: 351 KMKHRGMKPNSITYCSLVSA 370
           +M  RG   ++ T   L++ 
Sbjct: 543 EMAGRGFSFDATTTGVLINV 562



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 150/350 (42%), Gaps = 38/350 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           TF  L+  L    +   A +LF+ ++ + + +P+  +Y  +++   + G  ++  S +  
Sbjct: 134 TFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRI 193

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+   + KPDV TYSI+I +  K    D    +L EM    I                  
Sbjct: 194 MEQ-GNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIP----------------- 235

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
                              P+IFT NS+I      G  EK++   +E   + +  ++ T 
Sbjct: 236 -------------------PNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTF 276

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +IL     + G  +    VM  M ++   P ++TY+ +++ +   G +++    F  ++ 
Sbjct: 277 SILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRD 336

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+KPN  +Y  L++ Y K   + K   +  ++    +  DT  ++ I+    + G +  
Sbjct: 337 KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGD 396

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
             ++F  M      PD    +T++  Y   G+ E A  L +K+   +E++
Sbjct: 397 AKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDT 446



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 14/290 (4%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y+A+VS + +  +L            +SD   ++ T S  ++     HR D    +L   
Sbjct: 78  YSAVVSLFREMRILG---------IPISDSILNIVTNSYCLR-----HRIDCAFSVLPIY 123

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              GI  + VT+NT++ G     K  +    F  +V    C P+     ++++     G+
Sbjct: 124 LKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGH 183

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            EK             K D++T +I+  +  +    D   ++++ M+++   P + TYN 
Sbjct: 184 TEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNS 243

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I+   K G  EK++    +M +  + PN  T+  L+    K G +   D ++R +    
Sbjct: 244 LIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKG 303

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           V  D   ++ I+  Y   G V++   +F  ++++   P+  +++ +I  Y
Sbjct: 304 VEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGY 353



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 1/211 (0%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P +   + +     N  +   +   + E  ++G+      LNI+T SY      D   SV
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYS 372
           +    K      VVT+N ++        +      FKK+ + +  +PN + Y ++++  S
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLS 179

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           K G   K  S+LR +E  +   D   ++ +I A  +  +++    L   MK+++  P+  
Sbjct: 180 KRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIF 239

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
           T+ ++I     LG  E  + L ++M+ +  N
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEMVNLNIN 270


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 162/367 (44%), Gaps = 37/367 (10%)

Query: 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 183
           L  C    +A+ LF+ M+S GLKP++ +YT +V    + G  +EA   +  MK      P
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKD-QGLSP 510

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           DV+ Y+ +I    K  + +  +  L EM   G++ +  TY   I GY +A + +  E SF
Sbjct: 511 DVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSF 570

Query: 244 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 269
             M++SG                                  G  PD+ T + +I     +
Sbjct: 571 IEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKN 630

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++    ++E    G+  D+ T   L  +  + G       + D M K+   P +VTY
Sbjct: 631 GKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTY 690

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I    K G I K  E F  +  +G+  NS+TY ++++ Y K+  + +   +   ++ 
Sbjct: 691 NALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKL 750

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTE 448
             V  D+  +  +I    +AG+ EK   LFL M E   +     F  +I  +  LG + E
Sbjct: 751 VGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIE 809

Query: 449 AAQNLEN 455
           A Q +E+
Sbjct: 810 AYQLVED 816



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 175/376 (46%), Gaps = 16/376 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +DEA++ K+  +A K  GLL     Y      F +        K+  +   + + M + G
Sbjct: 283 VDEALELKR-SMANK--GLLPDNYIYATLIDGFCRQ-------KRSTEGKSMLDEMYTMG 332

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           LKP    YTAL++ + +   +  AF    +M +    K + +TY  LI    K    +  
Sbjct: 333 LKPDHVAYTALINGFVKQSDIGGAFQVKEEMFA-RKIKLNTFTYYALIHGLCKIGDLEKA 391

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSM 262
           E + +EM+ +GI+    TYN +I+GY    K + ME ++  ++E        + +   ++
Sbjct: 392 EDLFSEMTMMGIKPDIQTYNCLIEGY---YKVQNMEKAYELLIEIKKENLTANAYMCGAI 448

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           ++   + G++ +  + + E    G+K +I     + K   + G +++   ++  M+ +  
Sbjct: 449 VNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGL 508

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P V  YN VI  F KAG +E+ + Y  +M  +G+KPN  TY + +  Y +AG +   + 
Sbjct: 509 SPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAER 568

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++ +S +  +      +I  Y + G+  K    F  M ++  +PD  T + +I   +
Sbjct: 569 SFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLS 628

Query: 443 ALGMTEAAQNLENKMI 458
             G  + A  + ++++
Sbjct: 629 KNGKLQEAMGVFSELL 644



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 10/340 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  + E+   +   M   G  P++  Y+ +++   ++G +DEA      M
Sbjct: 234 TYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSM 293

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--- 232
            +     PD Y Y+ LI    +  R    + +L EM  +G++   V Y  +I+G+ K   
Sbjct: 294 AN-KGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSD 352

Query: 233 -AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
               F+  E  F+  ++      + FT  ++I      G++EK E  ++E  +MG+K DI
Sbjct: 353 IGGAFQVKEEMFARKIK-----LNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDI 407

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           QT N L + Y +    +K   ++  ++K            ++      G + +  E F++
Sbjct: 408 QTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQE 467

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+KPN + Y ++V    K G   +   IL  +++  +  D   +N +I  + +AG 
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           +E+     + M  +   P+  T+   I  Y   G  +AA+
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAE 567



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 46/358 (12%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           QT + L+  L K  + ++A  +F  +L  GL P V  YT+L+S   + G L  AF   +D
Sbjct: 618 QTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDD 677

Query: 175 MKSVSDCK----PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           M     CK    P++ TY+ LI    K        ++   +   G+  ++VTY+TII GY
Sbjct: 678 M-----CKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGY 732

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K+    E    F  M +  G  PD F   ++I     +GN EK    +      G+ A 
Sbjct: 733 CKSANLTEAFQLFHGM-KLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-AS 790

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
               N L   + + G   +   +++ M      P  VTY I+IE     G+I++ E+ F 
Sbjct: 791 TPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFM 850

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M+ R + PN +TY SL+  Y++ G         R+ E                      
Sbjct: 851 EMQKRNVMPNVLTYTSLLHGYNRIG---------RRSE---------------------- 879

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 468
               M  LF  M  R   PD++ ++ M+ A+   G    A  L + M++   N  K L
Sbjct: 880 ----MFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNL 933



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 3/299 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +  +A  LF+ +   GL  +   Y+ +++ Y +S  L EAF   + M
Sbjct: 689 TYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGM 748

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K V    PD + Y  LI  C K    +    +   M   GI  S   +N +IDG+ K  K
Sbjct: 749 KLVG-VPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALIDGFFKLGK 806

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E       MV++    P+  T   +I  +   GNI++ E+ + E     V  ++ T  
Sbjct: 807 LIEAYQLVEDMVDNH-ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYT 865

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y R G   +M S+ D M  R   P  + ++++++   K G+  K  +    M   
Sbjct: 866 SLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSE 925

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           G+      Y  L+ A  K   + +V  +L +VE     L       ++  + +AG  ++
Sbjct: 926 GVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDE 984



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 133/309 (43%), Gaps = 5/309 (1%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           +  L+  Y + G L+EA S     K+ ++    +   + L K   K +R +L  K+   M
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKT-NEFIVGLACCNSLSKDLLKGNRVELFWKVYKGM 224

Query: 212 SYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             LG I     TY  +I+ Y +  K EE +     M E  GC P++ T + +I+    +G
Sbjct: 225 --LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDM-EEKGCIPNLVTYSVVIAGLCRAG 281

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           ++++  +        G+  D      L   + R     + +S++D M      P  V Y 
Sbjct: 282 DVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYT 341

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +I  F K   I    +  ++M  R +K N+ TY +L+    K G + K + +  ++   
Sbjct: 342 ALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMM 401

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  D   +NC+I  Y +  ++EK  EL + +K+ +   +      ++      G    A
Sbjct: 402 GIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRA 461

Query: 451 QNLENKMIA 459
             L  +MI+
Sbjct: 462 NELFQEMIS 470



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 5/240 (2%)

Query: 115 QTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            +F    ++ G CK    E+A  LF  M+ +G+  S   + AL+  + + G L EA+  +
Sbjct: 756 DSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQLV 814

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            DM   +   P+  TY+ILI+           E++  EM    +  + +TY +++ GY +
Sbjct: 815 EDMVD-NHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNR 873

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             +  EM S F  MV + G  PD    + M+ A+   GN  K  K  ++    GV     
Sbjct: 874 IGRRSEMFSLFDEMV-ARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN 932

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
              IL  +  +     ++  V+D ++K+    ++ T   ++  F +AG  ++     + M
Sbjct: 933 LYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 86/177 (48%)

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
           L  +  D+ T   L  +Y R G  ++ + V+  M+++   P +VTY++VI    +AG ++
Sbjct: 225 LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVD 284

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           +  E  + M ++G+ P++  Y +L+  + +     +  S+L ++    +  D   +  +I
Sbjct: 285 EALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALI 344

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           + + +  D+    ++   M  R    +  T+  +I     +G  E A++L ++M  M
Sbjct: 345 NGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMM 401



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +  +  +   LF+ M++ G+KP    ++ +V A+ + G   +A   ++DM
Sbjct: 863 TYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDM 922

Query: 176 KS--VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            S  V+ CK     Y+ILI +  K +    + K+L E+   G + S  T  T++  + +A
Sbjct: 923 LSEGVNVCKN---LYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRA 979

Query: 234 KKFEEMESSFSAMVES 249
            + +E      +MV S
Sbjct: 980 GRTDEALRVLESMVRS 995


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 161/344 (46%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TF  L+  L    +  +A +L + M+ +G +P V  Y ++V+   +SG    A 
Sbjct: 144 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLAL 203

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +  M+   + K DV+TYS +I S  +    D    +  EM   GI+ S VTYN+++ G
Sbjct: 204 DLLRKMEE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 262

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             KA K+ +       MV S    P++ T N ++  +   G +++  + Y E    G+  
Sbjct: 263 LCKAGKWNDGALLLKDMV-SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 321

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I T N L   Y       +  +++D M +    P +VT+  +I+ +     ++   + F
Sbjct: 322 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 381

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           + +  RG+  N++TY  LV  + ++G I   + + +++ +  V+ D   +  ++      
Sbjct: 382 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDN 441

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK  E+F  +++       + + T+I+     G  E A NL
Sbjct: 442 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 485



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 39/358 (10%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+ +    +   FT   ++   C+    + A  LF+ M + G+K SV  Y +LV    
Sbjct: 205 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 264

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G  ++    + DM S  +  P+V T+++L+    K  +     ++  EM   GI  + 
Sbjct: 265 KAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNI 323

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG------------- 267
           +TYNT++DGY    +  E  +    MV +  C PDI T  S+I  Y              
Sbjct: 324 ITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIKGYCMVKRVDDGMKVFR 382

Query: 268 ----------------------NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
                                  SG I+  E+ + E    GV  D+ T  IL       G
Sbjct: 383 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 442

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             +K   + + +QK      +V Y  +IE   K G +E     F  +  +G+KPN +TY 
Sbjct: 443 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 502

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
            ++S   K G + + + +LR++E      +   +N +I A+ + GD+    +L   MK
Sbjct: 503 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 560



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  LF+ M+     PS+  ++   SA  ++   +        ++ ++    ++YT 
Sbjct: 58  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 116

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +I+I    +  +      +L ++  LG E    T+NT+I G     K  E       MVE
Sbjct: 117 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 176

Query: 249 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 277
           +G C PD+ T NS+++    SG+       + KME+                        
Sbjct: 177 NG-CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 235

Query: 278 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T+N+++
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 295

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  +  +   
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  + A+ L
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415

Query: 454 ENKMIA 459
             +M++
Sbjct: 416 FQEMVS 421



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 134/331 (40%), Gaps = 39/331 (11%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD      K + AL+IF  L Q+         +T ++  + K  + E A  LF  +   G
Sbjct: 435 LDGLCDNGKLEKALEIFEDL-QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 493

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +KP+V  YT ++S   + G L EA   +  M+   +  P+  TY+ LI++  +       
Sbjct: 494 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN-APNDCTYNTLIRAHLRDGDLTAS 552

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESSFSAMVESGG------ 251
            K++ EM   G    A +   +ID    A K         +   S   ++E  G      
Sbjct: 553 AKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRL 612

Query: 252 ----------CHPDIFTLN-SMISAYG-NSGNIEK-MEKWYNEFNLMGVK-ADIQTLNIL 297
                     C+    +LN + I A G NS  + + + K      L   K  D++ L  +
Sbjct: 613 SSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVL--V 670

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGH---IEKMEEYFKKMK 353
           T      G+ D    +M  ++     PT  V Y        + G    +   EE  K+M 
Sbjct: 671 TNELLTWGLEDAECDLMVDLE----LPTDAVHYAHRAGRMRRPGRKMTVVTAEELHKEMI 726

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            RG+ PN+ITY SL+  + K   + + + +L
Sbjct: 727 QRGIAPNTITYSSLIDGFCKENRLDEANQML 757


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 158/324 (48%), Gaps = 2/324 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ ++  L K +   +A  LF  M   G+   V  Y+ L+  +   G L EA   +N+M 
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEM- 260

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +    P+VYTY+IL+ +  K  +    + +LA M    ++   +TY+T++DGY    + 
Sbjct: 261 VLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEV 320

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           ++ +  F+AM    G  PD+ T   +I+ +  +  +++    + E +   +   I T + 
Sbjct: 321 KKAQHVFNAM-SLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L     ++G    +  ++D M  R     V+TY+ +I+   K GH+++    F KMK +G
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           ++PN+ T+  L+    K G +     + + +      L+   +N +I  + + G +E+  
Sbjct: 440 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEAL 499

Query: 417 ELFLTMKERHCVPDNITFATMIQA 440
            +   M++  C+PD +TF  +I A
Sbjct: 500 TMLSKMEDNGCIPDAVTFEIIIIA 523



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 162/336 (48%), Gaps = 6/336 (1%)

Query: 125 GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  +  + +  +   DG   KP+V +Y+ ++ A  +  L+ EA+   ++M +V    
Sbjct: 173 GVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEM-TVKGIS 231

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            DV TYS LI       +      +L EM    I  +  TYN ++D   K  K +E +S 
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSV 291

Query: 243 FSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            + M+++  C  PD+ T ++++  Y     ++K +  +N  +LMGV  D+ T  IL   +
Sbjct: 292 LAVMLKA--CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
            +  M D+  ++   M ++   P +VTY+ +I+   K+G I  + +   +M  RG   N 
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANV 409

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY SL+    K G + +  ++  ++++  +  +T  F  ++    + G ++   E+F  
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +    +  T+  MI  +   G+ E A  + +KM
Sbjct: 470 LLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKM 505



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 125/276 (45%), Gaps = 6/276 (2%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSA 158
            GLL +          +T  +++   CK+ +  +A  +  VML   +KP V  Y+ L+  
Sbjct: 254 IGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDG 313

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y     + +A    N M S+    PDV+TY+ILI    K    D    +  EM    +  
Sbjct: 314 YFLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEK 277
             VTY+++IDG  K+ +   +      M + G   P ++ T +S+I     +G++++   
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRG--QPANVITYSSLIDGLCKNGHLDRAIA 430

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            +N+    G++ +  T  IL     + G     + V   +  + +   V TYN++I+   
Sbjct: 431 LFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHC 490

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           K G +E+      KM+  G  P+++T+  ++ A  K
Sbjct: 491 KQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFK 526



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%)

Query: 280  NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339
            +   L G++ D+ TLNIL   +   G      S++  + KR + P  +T+  +I      
Sbjct: 950  HRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLK 1009

Query: 340  GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399
            G + K   +  K+  +G + N ++Y +L++   K G       +LR+++      D   +
Sbjct: 1010 GQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMY 1069

Query: 400  NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            N II A  +   V K   LF  M  +    D +T+ T+I  +  +G  + A  L NKM+
Sbjct: 1070 NTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMV 1128



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 132/299 (44%), Gaps = 8/299 (2%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           +D+A S  N M  +    P +  ++ ++ S  K   +     +   +   GI+   +T N
Sbjct: 40  VDDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+ +    +     S  + +++ G   PD  TLN++I      G ++K   ++++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRG-YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGH 341
            G + +  +   L     + G     R+ +  +QK   R   P VV Y+ +I+   K   
Sbjct: 158 QGFQLNQVSYGTLINGVCKIG---DTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQL 214

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           + +    F +M  +G+  + +TY +L+  +   G + +   +L ++    +  +   +N 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           ++ A  + G V++   +   M +    PD IT++T++  Y  +   + AQ++ N M  M
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 38/243 (15%)

Query: 182  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKK--- 235
            +PD++T +ILI       +      ILA++   G     +T+ T+I+G    G+  K   
Sbjct: 958  QPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALH 1017

Query: 236  ---------FEEMESSFSAMVESGGC--------------------HPDIFTLNSMISAY 266
                     F+  + S+  ++ +G C                     PD+   N++I A 
Sbjct: 1018 FHDKLLAQGFQLNQVSYGTLI-NGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDAL 1076

Query: 267  GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
                 + K    + E N+ G+ AD+ T N L   +   G   +   +++ M  +   P V
Sbjct: 1077 CKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNV 1136

Query: 327  VTYNIVIETFGKAGH--IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
             TYNI+++   K G   +++      KM+  G K N++T+  ++SA  +     KV+ +L
Sbjct: 1137 RTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLL 1196

Query: 385  RQV 387
             ++
Sbjct: 1197 HEM 1199



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 107/250 (42%), Gaps = 9/250 (3%)

Query: 215  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            GI+    T N +I+ +    +      S  A +   G HPD  T  ++I+     G + K
Sbjct: 956  GIQPDLFTLNILINCFCHMGQIT-FNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 275  MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNI 331
               ++++    G + +  +   L     + G     R+ +  ++K   R   P VV YN 
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIG---DTRAAIKLLRKIDGRLTKPDVVMYNT 1071

Query: 332  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            +I+   K   + K    F +M  +G+  + +TY +L+  +   G + +   +L ++    
Sbjct: 1072 IIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKT 1131

Query: 392  VILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
            +  +   +N ++ A  + G   +++   +   M++  C  + +TF  +I A       + 
Sbjct: 1132 INPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDK 1191

Query: 450  AQNLENKMIA 459
             + L ++MIA
Sbjct: 1192 VEKLLHEMIA 1201



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 140  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
            +L  G  P    +T L++     G +++A    +D       + +  +Y  LI    K  
Sbjct: 987  ILKRGYHPDTITFTTLINGLCLKGQVNKALH-FHDKLLAQGFQLNQVSYGTLINGVCKIG 1045

Query: 200  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                  K+L ++     +   V YNTIID   K +   +    F  M    G   D+ T 
Sbjct: 1046 DTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEM-NVKGISADVVTY 1104

Query: 260  NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG--MYDKMRSVMDFM 317
            N++I  +   G +++     N+  L  +  +++T NIL  +  + G  + D+  S++  M
Sbjct: 1105 NTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKM 1164

Query: 318  QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            +        VT+ I+I    +    +K+E+   +M  RG+
Sbjct: 1165 EDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 7/129 (5%)

Query: 93   KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC---KQPEQASLLFEVMLSDGLKPSV 149
            K QL  K +GL  +           T   ++ G C   K  E   LL +++L   + P+V
Sbjct: 1078 KHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKT-INPNV 1136

Query: 150  DVYTALVSAYGQSG--LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
              Y  LV A  + G  LLDE+ S ++ M+  + CK +  T+ I+I +  +    D +EK+
Sbjct: 1137 RTYNILVDALCKEGKDLLDESLSMLSKMED-NGCKANAVTFEIIISALFEKDENDKVEKL 1195

Query: 208  LAEMSYLGI 216
            L EM   G+
Sbjct: 1196 LHEMIARGL 1204



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 125  GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
            G CK  +  + +  +   DG   KP V +Y  ++ A  +  L+ +A+    +M +V    
Sbjct: 1040 GVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEM-NVKGIS 1098

Query: 183  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK--FEEME 240
             DV TY+ LI       +      +L +M    I  +  TYN ++D   K  K   +E  
Sbjct: 1099 ADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESL 1158

Query: 241  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            S  S M E  GC  +  T   +ISA       +K+EK  +E    G+
Sbjct: 1159 SMLSKM-EDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 161/323 (49%), Gaps = 4/323 (1%)

Query: 116 TFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            +T  +++ G CK  +  +A  + E+++  GL P+  +Y  L++ Y Q   L  AFS   
Sbjct: 335 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFE 394

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            MKS    +PD  TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG+A
Sbjct: 395 QMKS-RHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRA 453

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + E+  +  S M +  G   ++ +  S++ A+  +G I +     ++     V  + Q 
Sbjct: 454 GQLEKCFTVLSDM-QDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQV 512

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N +  +Y  +G  ++   +++ M+      ++ TYN++++   K   I++ EE    + 
Sbjct: 513 YNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLT 572

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           ++G++P+ ++Y +++SA    G   +   +L+++   D+      ++ ++SA G AG V 
Sbjct: 573 NQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVH 632

Query: 414 KMGELFLTMKERHCVPDNITFAT 436
            M  L+  M  ++  P +  + T
Sbjct: 633 DMECLYQHMVHKNVEPSSSIYGT 655



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 37/357 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L + ML DG KP+V  Y  L+S   ++G +DE  + +++M S S   PD +TYSIL    
Sbjct: 252 LRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYS-MLPDGFTYSILFDGL 310

Query: 196 T-----------------------------------KFHRFDLIEKILAEMSYLGIECSA 220
           T                                   K  +    E++L  + + G+  + 
Sbjct: 311 TRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 370

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
             YNT+I+GY + +  +   S F  M +S    PD  T N++I+       I + E    
Sbjct: 371 AIYNTLINGYCQVRDLQGAFSIFEQM-KSRHIRPDHITYNALINGLCKMEMITEAEDLVM 429

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           E    GV   ++T N L  +YGRAG  +K  +V+  MQ +     V+++  V++ F K G
Sbjct: 430 EMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNG 489

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            I +       M H+ + PN+  Y S++ AY ++G   +   ++ ++++S V      +N
Sbjct: 490 KIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYN 549

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++    +   +++  EL   +  +   PD +++ T+I A    G T+ A  L  +M
Sbjct: 550 LLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEM 606



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 168/392 (42%), Gaps = 38/392 (9%)

Query: 102 GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           G +R      + C    + ++ +G+      A   F ++++ G +P    +   V A   
Sbjct: 114 GSVRSPLPSLSSCNLLLESLLSVGRHADVRAA---FGLLVAAGARPDTFAWNKAVQACVA 170

Query: 162 SGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           +G LDEA + +  M +S     PD ++Y+++I    +  +     K+  EM   G+  + 
Sbjct: 171 AGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQ 230

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVE--------------SGGCH------------- 253
           +TYNT+IDG+ K    E        M++              SG C              
Sbjct: 231 ITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDE 290

Query: 254 -------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
                  PD FT + +      +G+   M   + E    GV     T +IL     + G 
Sbjct: 291 MTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGK 350

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
             K   V++ +      PT   YN +I  + +   ++     F++MK R ++P+ ITY +
Sbjct: 351 VAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNA 410

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L++   K  +I + + ++ ++E S V      FN +I AYG+AG +EK   +   M+++ 
Sbjct: 411 LINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKG 470

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              + I+F ++++A+   G    A  + + MI
Sbjct: 471 IKSNVISFGSVVKAFCKNGKIPEAVAILDDMI 502



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 10/234 (4%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  L+   G+  Q E+   +   M   G+K +V  + ++V A+ ++G + EA + ++D
Sbjct: 441 ETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDD 500

Query: 175 MKSVSDCKPDVYTYSIL----IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           M    D  P+   Y+ +    I+S      F L+EK    M   G+  S  TYN ++ G 
Sbjct: 501 MIH-KDVVPNAQVYNSIIDAYIESGGTEQAFLLVEK----MKSSGVSASIFTYNLLLKGL 555

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K  + +E E     +    G  PD+ + N++ISA  N G+ ++  +   E +   ++  
Sbjct: 556 CKNSQIDEAEELIYNLTNQ-GLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPT 614

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           ++T + L  + G AG    M  +   M  +   P+   Y    E   K   ++K
Sbjct: 615 LRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVASLKK 668


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 162/378 (42%), Gaps = 37/378 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L +    E A  LFE M + GL+P +  Y +L+  YG+ G+L  A S   +M
Sbjct: 253 TYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEM 312

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  + C+PDV TY+ LI    KF R     + L  M   G++ + VTY+T+ID + KA  
Sbjct: 313 KD-AGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGM 371

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M+  G   P+ FT  S+I A    G++ +  K  +E    GV  +I T  
Sbjct: 372 LLEANKFFVDMIRVG-LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYT 430

Query: 296 ILT-----------------------------------KSYGRAGMYDKMRSVMDFMQKR 320
            L                                      Y +A M +K   +++ M K+
Sbjct: 431 ALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK 490

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P ++ Y   I    +   IE      ++M   G+  NS  Y +L+ AY K G   + 
Sbjct: 491 NLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEA 550

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            ++L+++++  + +    +  +I    + G V++    F  M      P+ + +  +I  
Sbjct: 551 VNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDG 610

Query: 441 YNALGMTEAAQNLENKMI 458
                  E A+NL N+M+
Sbjct: 611 LCKNDCLEEAKNLFNEML 628



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 8/315 (2%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           +P   V+  L +     G+L+EA   F  +N  + +    P V + + L+   +K  +  
Sbjct: 178 RPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVL----PKVRSCNELLHRLSKSSKGG 233

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           L      +M   G+  S  TYN +I    +    E   S F  M ++ G  PDI T NS+
Sbjct: 234 LALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEM-KAKGLRPDIVTYNSL 292

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  YG  G +      + E    G + D+ T N L   + +     +    +  M++R  
Sbjct: 293 IDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVTY+ +I+ F KAG + +  ++F  M   G++PN  TY SL+ A  K G + +   
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  +++ + V L+   +  ++    + G + +  ELF  + +     +   + ++   Y 
Sbjct: 413 LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYI 472

Query: 443 ALGMTEAAQNLENKM 457
              M E A ++  +M
Sbjct: 473 KAKMMEKAMDILEEM 487



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 1/278 (0%)

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
           C+P    +  L          +   +   +M+   +     + N ++    K+ K     
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S F  MV +G   P +FT N +I      G++E     + E    G++ DI T N L   
Sbjct: 237 SFFKDMVVAG-LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           YG+ GM     SV + M+     P V+TYN +I  F K   I +  EY   MK RG++PN
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPN 355

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY +L+ A+ KAG++++ +     +    +  +   +  +I A  + GD+ +  +L  
Sbjct: 356 VVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLES 415

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            M++     + +T+  ++      G    A+ L   ++
Sbjct: 416 EMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALL 453



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 157/377 (41%), Gaps = 35/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K ++  QA      M   GL+P+V  Y+ L+ A+ ++G+L EA     DM
Sbjct: 323 TYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDM 382

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             V   +P+ +TY+ LI +  K    +   K+ +EM   G+  + VTY  ++DG  +  +
Sbjct: 383 IRVG-LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGR 441

Query: 236 FEEMESSFSAMVESG----------------------------------GCHPDIFTLNS 261
             E E  F A++++G                                     PD+    +
Sbjct: 442 MREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGT 501

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
            I        IE       E    G+ A+      L  +Y + G   +  +++  MQ   
Sbjct: 502 KIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLG 561

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
              TVVTY ++I+   K G +++   YF  M   G++PN + Y +L+    K   + +  
Sbjct: 562 IKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAK 621

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++  ++ +  +  D   +  +I    + G+  +   L   M E     D   + ++I  +
Sbjct: 622 NLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGF 681

Query: 442 NALGMTEAAQNLENKMI 458
           +  G  + A++L ++M+
Sbjct: 682 SRYGQVQLAKSLLDEML 698



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 156/386 (40%), Gaps = 35/386 (9%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q+  Q    T++ L+    K     +A+  F  M+  GL+P+   YT+L+ A  + G L
Sbjct: 348 KQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDL 407

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           +EAF   ++M+  +    ++ TY+ L+    +  R    E++   +   G   +   Y +
Sbjct: 408 NEAFKLESEMQQ-AGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTS 466

Query: 226 IIDGYGKAKKFE--------------------------------EMESSFSAMVESGGCH 253
           +  GY KAK  E                                E+E S + + E   C 
Sbjct: 467 LFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCG 526

Query: 254 --PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
              + +   ++I AY   G   +      E   +G+K  + T  +L     + G+  +  
Sbjct: 527 LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAV 586

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
              D M +    P ++ Y  +I+   K   +E+ +  F +M  +G+ P+ + Y SL+   
Sbjct: 587 RYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGN 646

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G   +  S+  ++    + LD   +  +I  + + G V+    L   M  +  +PD 
Sbjct: 647 MKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQ 706

Query: 432 ITFATMIQAYNALGMTEAAQNLENKM 457
           +    +++ Y  LG    A  L + M
Sbjct: 707 VLCICLLRKYYELGDINEALALHDDM 732



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 149/349 (42%), Gaps = 4/349 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           QQ        T+T L+  L +  +  +A  LF  +L  G   +  +YT+L   Y ++ ++
Sbjct: 418 QQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMM 477

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A   + +M    + KPD+  Y   I    + +  +    ++ EM   G+  ++  Y T
Sbjct: 478 EKAMDILEEMNK-KNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTT 536

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +ID Y K  K  E  +    M +  G    + T   +I      G +++  ++++     
Sbjct: 537 LIDAYFKVGKTTEAVNLLQEM-QDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRN 595

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G++ +I     L     +    ++ +++ + M  +   P  + Y  +I+   K G+  + 
Sbjct: 596 GLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEA 655

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
                +M   GM+ +   Y SL+  +S+ G +    S+L ++    +I D     C++  
Sbjct: 656 LSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRK 715

Query: 406 YGQAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQN 452
           Y + GD+ +   L   M  R  +    +IT  + + A   L    A+Q+
Sbjct: 716 YYELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLHKLCASQS 764


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 182/401 (45%), Gaps = 50/401 (12%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L L           Y  RC     L+    + +  ++A  ++  M S+G +  +  
Sbjct: 226 KKWDLRLNA---------YTYRC-----LLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFA 271

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+ A  +   LD ++    DMK +  C PD YTY+I+I+   K  R +    +  EM
Sbjct: 272 YNMLLDALAKDEQLDRSYKVFKDMK-LKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEM 330

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT----LNSMISAYG 267
              G   + + YNT+I    K+   ++    F  M+++  C P+ FT    LN ++ A G
Sbjct: 331 LTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN-NCRPNEFTYSIILNVLV-AEG 388

Query: 268 NSGNIEKMEKWYNEFNLMGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             G ++++ +  N+F    + A  ++TL+ L  S     ++  M S  D   +  +   +
Sbjct: 389 QLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISML 448

Query: 327 ----------------------------VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                                       + YN V+ T GK   +  + + ++KMK  G  
Sbjct: 449 ESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPF 508

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY  L+S+  + G + +   +  ++E+SD   D   +N +I+  G+ GDV++    
Sbjct: 509 PDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMR 568

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           FL M+++   PD +T++T+I+ +      E A++L ++MI 
Sbjct: 569 FLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMIT 609



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 173/387 (44%), Gaps = 39/387 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K ++   + K+F  ++ +        T+T ++ M GK  + E++  LFE ML+ G
Sbjct: 276 LDALAKDEQLDRSYKVFKDMKLKHCNPDE-YTYTIMIRMTGKMGRAEESLALFEEMLTKG 334

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P++  Y  ++ A  +SG++D+A     +M   ++C+P+ +TYSI++       +   +
Sbjct: 335 CTPNLIAYNTMIQALSKSGMVDKAILLFCNMIK-NNCRPNEFTYSIILNVLVAEGQLGRL 393

Query: 205 EKILA----------------EMSYLG-------IECSAVTYNTIIDGYGKAKKFEEMES 241
           +++L                  +S LG       + C+  +++   DG  +      +ES
Sbjct: 394 DEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFH---DGGDRDAYISMLES 450

Query: 242 -----------SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
                         + V   G   D    N+++S  G    +  +   Y +    G   D
Sbjct: 451 LCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPD 510

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I T NIL  S GR G   +   V + ++     P +++YN +I   GK G +++    F 
Sbjct: 511 IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFL 570

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M+ +G+ P+ +TY +L+  + K   +    S+  ++       +   +N ++    +AG
Sbjct: 571 EMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAG 630

Query: 411 DVEKMGELFLTMKERHCVPDNITFATM 437
              +  +L+  ++E+   PD+IT+A +
Sbjct: 631 RTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 2/183 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  ++  LGK KQ      L+E M  DG  P +  Y  L+S+ G+ G + EA     +++
Sbjct: 479 YNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELE 538

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S SDCKPD+ +Y+ LI    K    D       EM   G+    VTY+T+I+ +GK  K 
Sbjct: 539 S-SDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKV 597

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E   S F  M+ + GC P+I T N ++     +G   +    Y +    G+  D  T  I
Sbjct: 598 EMARSLFDRMI-TQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAI 656

Query: 297 LTK 299
           L +
Sbjct: 657 LDR 659



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 122/275 (44%), Gaps = 11/275 (4%)

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           + T +ILIK  +     +L   ++ +     +  +A TY  ++  + +++   + + +F+
Sbjct: 202 ISTVNILIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCLLQAHIRSR---DSDRAFN 255

Query: 245 AMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
             +E  S G   DIF  N ++ A      +++  K + +  L     D  T  I+ +  G
Sbjct: 256 VYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTG 315

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G  ++  ++ + M  +   P ++ YN +I+   K+G ++K    F  M     +PN  
Sbjct: 316 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEF 375

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  +++     G + ++D +L   E S+  ++   +  ++    + G   +   LF  M
Sbjct: 376 TYSIILNVLVAEGQLGRLDEVL---EVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM 432

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              H   D   + +M+++    G T  A  L +K+
Sbjct: 433 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKV 467



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D++R ++  M +     T+ T NI+I+ F     +E      KK     ++ N+ TY  L
Sbjct: 184 DQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCL 240

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           + A+ ++    +  ++  ++ ++   LD   +N ++ A  +   +++  ++F  MK +HC
Sbjct: 241 LQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHC 300

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            PD  T+  MI+    +G  E +  L  +M+ 
Sbjct: 301 NPDEYTYTIMIRMTGKMGRAEESLALFEEMLT 332



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 38/203 (18%)

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I T+N +I  + ++ ++E       +++L   + +  T   L +++ R+   D+  +V  
Sbjct: 202 ISTVNILIKIFSSNEDLELCTGLIKKWDL---RLNAYTYRCLLQAHIRSRDSDRAFNVYM 258

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M    +   +  YN++++   K   +++  + FK MK +   P+  TY           
Sbjct: 259 EMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTY----------- 307

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                                     +I   G+ G  E+   LF  M  + C P+ I + 
Sbjct: 308 ------------------------TIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYN 343

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           TMIQA +  GM + A  L   MI
Sbjct: 344 TMIQALSKSGMVDKAILLFCNMI 366


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 169/375 (45%), Gaps = 19/375 (5%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPS 148
           + K + A+++ G   Q + Y       T  +++   CK+    QA  LF  M + G KP 
Sbjct: 194 RGKLKQAMQVLGRQLQSKCYP---DVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPD 250

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  Y  L+  + + G LDEA   +  + S   C+PDV +++++++S     R+    K+L
Sbjct: 251 VVTYNVLIKGFCKGGRLDEAIRFLKKLPSYG-CQPDVISHNMILRSLCSGGRWMDAMKLL 309

Query: 209 AEMSYLGIECSAVTYNTIIDGY------GKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           A M   G   S VT+N +I+        GKA    EM       +   G  P+  + N +
Sbjct: 310 ATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEM-------MPKHGHTPNSRSFNPL 362

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  + N   I++  ++       G   DI T NIL  +  + G  D    ++  +  +  
Sbjct: 363 IQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 422

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P++++YN VI+   K G  E   E  ++M ++G+KP+ IT  S+V   S+ G + +   
Sbjct: 423 SPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMK 482

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
               ++   +  +   +N II+   ++       +    M  + C P   T+ T+I+   
Sbjct: 483 FFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGIT 542

Query: 443 ALGMTEAAQNLENKM 457
             G+ E A  L N++
Sbjct: 543 YEGLAEDASKLSNEL 557



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 151/370 (40%), Gaps = 44/370 (11%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK- 176
           T L+    K  + + AS +  ++   G    V  Y  L+S Y +SG ++EA   ++ M  
Sbjct: 118 TALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRMGV 177

Query: 177 ------------SVSD------------------CKPDVYTYSILIKSCTKFHRFDLIEK 206
                       S+ D                  C PDV T ++LI +  K        K
Sbjct: 178 SPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMK 237

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +  EM   G +   VTYN +I G+ K  + +E    F   + S GC PD+ + N ++ + 
Sbjct: 238 LFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDE-AIRFLKKLPSYGCQPDVISHNMILRSL 296

Query: 267 GNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            + G      +W +   L+      G    + T NIL     + G+  K  +V++ M K 
Sbjct: 297 CSGG------RWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKH 350

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P   ++N +I+ F     I++  EY + M  RG  P+ +TY  L++A  K G +   
Sbjct: 351 GHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDA 410

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             IL Q+ +         +N +I    + G  E   EL   M  +   PD IT  +++  
Sbjct: 411 VVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGG 470

Query: 441 YNALGMTEAA 450
            +  G    A
Sbjct: 471 LSREGKVREA 480



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 141/320 (44%), Gaps = 5/320 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+ S   E M + G  P V   TAL+  + + G    A S I  +   S    DV +Y++
Sbjct: 96  EEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNA-SQIMGILEESGAVIDVTSYNV 154

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI   + + +   IE+ L  +  +G+  +A TY+ ++       K ++        ++S 
Sbjct: 155 LI---SGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQS- 210

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C+PD+ T   +I A      + +  K +NE    G K D+ T N+L K + + G  D+ 
Sbjct: 211 KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEA 270

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
              +  +      P V+++N+++ +    G      +    M  +G  P+ +T+  L++ 
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINF 330

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + GL+ K  ++L  +       ++  FN +I  +     +++  E    M  R C PD
Sbjct: 331 LCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPD 390

Query: 431 NITFATMIQAYNALGMTEAA 450
            +T+  ++ A    G  + A
Sbjct: 391 IVTYNILLTALCKDGKVDDA 410



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 3/213 (1%)

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S    ++E  G   D+ + N +IS Y  SG IE+  +  +    MGV  +  T + +  S
Sbjct: 134 SQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDR---MGVSPNAATYDAVLCS 190

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G   +   V+    +   +P VVT  ++I+   K   + +  + F +M+++G KP+
Sbjct: 191 LCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPD 250

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +TY  L+  + K G + +    L+++ +     D    N I+ +    G      +L  
Sbjct: 251 VVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLA 310

Query: 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           TM  + C+P  +TF  +I      G+   A N+
Sbjct: 311 TMLRKGCLPSVVTFNILINFLCQKGLLGKALNV 343



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 80/182 (43%), Gaps = 3/182 (1%)

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +G +E+  ++       G   D+     L + + + G       +M  +++      V +
Sbjct: 92  NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTS 151

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           YN++I  + K+G I   EE  + +   G+ PN+ TY +++ +    G + +   +L +  
Sbjct: 152 YNVLISGYCKSGEI---EEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            S    D      +I A  +   V +  +LF  M+ + C PD +T+  +I+ +   G  +
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 449 AA 450
            A
Sbjct: 269 EA 270



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 37/208 (17%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++F  L+      K  ++A    E+M+S G  P +  Y  L++A  + G +D+A   ++ 
Sbjct: 357 RSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ 416

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-----IECSAVT------- 222
           + S   C P + +Y+ +I    K  + +L  ++L EM Y G     I C++V        
Sbjct: 417 LSS-KGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREG 475

Query: 223 -----------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                                  YN+II G  K+++   +   F A + + GC P   T 
Sbjct: 476 KVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQ-TSLAIDFLADMVAKGCKPTEATY 534

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            ++I      G  E   K  NE    G+
Sbjct: 535 TTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 263 ISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNILT----------KSYGRAGMYDK 309
           +S Y NSG   N++  E+ +++  L GV++    +N             +   R G  ++
Sbjct: 39  VSKYENSGLKGNLQHSER-FSKGALNGVESSPDRVNTSLNFEESEIRHLRRLIRNGELEE 97

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               +++M  +   P V+    +I  F K G  +   +    ++  G   +  +Y  L+S
Sbjct: 98  GSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLIS 157

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
            Y K+G   +++  LR ++   V  +   ++ ++ +    G +++  ++     +  C P
Sbjct: 158 GYCKSG---EIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYP 214

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T   +I A         A  L N+M
Sbjct: 215 DVVTCTVLIDATCKESGVGQAMKLFNEM 242


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 32/347 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF+ L+    K  +  +A  L++ ML   + PS   Y++++  + +   LD A      +
Sbjct: 325 TFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFY-L 383

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C PD+ T++ LI    +  R D   K+L EM+  G+  + +TY T+I G+ +   
Sbjct: 384 TPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 443

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
               +     M+ SG C P++ T N+++    ++G   K++     F  M          
Sbjct: 444 LNAAQDLLQEMISSGVC-PNVVTCNTLLDGLCDNG---KLKDALEMFKAM---------- 489

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
                          +S MD    R F    P V TYNI+I      G   + EE +++M
Sbjct: 490 --------------QKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
            HRG+ P++ITY S++    K   + +   +   + +     D   FN +I+ Y +AG V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMV 595

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +   ELF  M +R  V D IT+ T+I  +  +   + A ++  +MI+
Sbjct: 596 DDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMIS 642



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 7/362 (1%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  +  C   +FT LM     C +   A   F  +   G  P+V  +  L+ 
Sbjct: 100 VISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLH 159

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA    + M     CKP+V T++ L+    +  R      +L  M   G++
Sbjct: 160 GLCVEDRISEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQ 214

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + +TY TI+DG  K        +    M E     P++   N++I      G       
Sbjct: 215 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHN 274

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            + E     +  DI T N +   +  +G +     ++  M +R   P VVT++ +I  F 
Sbjct: 275 LFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFV 334

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           K G   + EE + +M  R + P+++TY S++  + K   +   + +           D  
Sbjct: 335 KEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDII 394

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            FN +I+ Y +A  V+   +L   M E   V + IT+ T+I  +  +G   AAQ+L  +M
Sbjct: 395 TFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 454

Query: 458 IA 459
           I+
Sbjct: 455 IS 456



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 150/362 (41%), Gaps = 48/362 (13%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL +F      Q  +    TFT LM  L +  +  +A  L + ML DGL+P+   Y  +V
Sbjct: 170 ALDLF-----HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIV 224

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               + G    A + +  M+ VS   P+V                               
Sbjct: 225 DGMCKMGDTVSALNLLRKMEEVSHIIPNV------------------------------- 253

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
               V YNTIIDG  K  +  +  + F  M E     PDI T N MI+ +  SG     E
Sbjct: 254 ----VIYNTIIDGLWKDGRHSDAHNLFIEMQEKE-IFPDIVTYNCMINGFCISGRWSDAE 308

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +   E     +  D+ T + L  ++ + G + +   + D M  R   P+ VTY+ +I+ F
Sbjct: 309 QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGF 368

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
            K   ++  E  F     +G  P+ IT+ +L++ Y +A  +     +L ++  + ++ +T
Sbjct: 369 CKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANT 428

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-------NALGMTEA 449
             +  +I  + Q GD+    +L   M      P+ +T  T++          +AL M +A
Sbjct: 429 ITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 450 AQ 451
            Q
Sbjct: 489 MQ 490



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 13/284 (4%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CKQ   + A  +F +  + G  P +  +  L++ Y ++  +D+    +++M       
Sbjct: 367 GFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG-LV 425

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            +  TY+ LI    +    +  + +L EM   G+  + VT NT++DG     K ++    
Sbjct: 426 ANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEM 485

Query: 243 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F AM +S           G  PD+ T N +I    N G   + E+ Y E    G+  D  
Sbjct: 486 FKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + +     +    D+   + D M  + F P VVT+N +I  + KAG ++   E F +M
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEM 605

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             RG+  ++ITY +L+  + K   I     I +++ +S V  DT
Sbjct: 606 GQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDT 649



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 21/316 (6%)

Query: 73  YKNLWPKPVLEA-------LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125
           Y  + P+ ++ +       +D   KQ +   A  +F  L   +       TF  L+    
Sbjct: 346 YDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF-YLTPTKGCSPDIITFNTLIAGYC 404

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           + K+ +    L   M   GL  +   YT L+  + Q G L+ A   + +M S   C P+V
Sbjct: 405 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVC-PNV 463

Query: 186 YTYSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAK 234
            T + L+   C      D +E           I A   + G+E    TYN +I G     
Sbjct: 464 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEG 523

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           KF E E  +  M   G   PD  T +SMI        +++  + ++         D+ T 
Sbjct: 524 KFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTF 582

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   Y +AGM D    +   M +R      +TY  +I  F K  +I+   + F++M  
Sbjct: 583 NTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMIS 642

Query: 355 RGMKPNSITYCSLVSA 370
            G+ P++IT  ++++ 
Sbjct: 643 SGVYPDTITIRNMLTG 658



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 120/277 (43%), Gaps = 6/277 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P V  +  L+    +  R D++  +  +M  L + C+A ++  ++  +    K     S+
Sbjct: 79  PSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALST 138

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  + +  G HP + T N+++        I +    +++      K ++ T   L     
Sbjct: 139 FGKITKL-GFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLC 193

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNS 361
           R G   +  +++D M +    P  +TY  +++   K G         +KM+    + PN 
Sbjct: 194 REGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNV 253

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           + Y +++    K G      ++  +++  ++  D   +NC+I+ +  +G      +L   
Sbjct: 254 VIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQE 313

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           M ER   PD +TF+ +I A+   G    A+ L ++M+
Sbjct: 314 MLERKINPDVVTFSALINAFVKEGKFFEAEELYDEML 350



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 104/267 (38%), Gaps = 33/267 (12%)

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           G+ + K  ++    F  MV S    P +     ++      G  + +   + +  ++ + 
Sbjct: 55  GFHEIKGLDDAIDLFGYMVRSRPL-PSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMP 113

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-------------- 334
            +  +  IL K +          S    + K  F PTVVT+N ++               
Sbjct: 114 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDL 173

Query: 335 ----------TFG-------KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
                     TF        + G + +      +M   G++PN ITY ++V    K G  
Sbjct: 174 FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 233

Query: 378 MKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           +   ++LR++E  S +I +   +N II    + G       LF+ M+E+   PD +T+  
Sbjct: 234 VSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNC 293

Query: 437 MIQAYNALGMTEAAQNLENKMIAMKEN 463
           MI  +   G    A+ L  +M+  K N
Sbjct: 294 MINGFCISGRWSDAEQLLQEMLERKIN 320


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 37/377 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K     QA +L + M + G +P +  Y  L++A    G +DEA + ++D+
Sbjct: 199 TYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDL 258

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   CKPD  TY+ ++KS     R+  +E++ AEM+        VT+NTI+    +   
Sbjct: 259 PS-HGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGL 317

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE---------------------- 273
            +        M E G C PDI T +S++    + G ++                      
Sbjct: 318 VDRAIKVVDHMSEHG-CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 376

Query: 274 -------KMEKWYNEFNLMG------VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
                   +E+W +   LM          D  T N +  S  + G+ D+   V++ M + 
Sbjct: 377 TVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSEN 436

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +VTYN +I+       I+   E    ++  G KP+ +T+ +L+            
Sbjct: 437 GCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDA 496

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + ++  + +SD   D   FN +I++  Q G + +  E    M E  C+P+  T+  ++ A
Sbjct: 497 EQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDA 556

Query: 441 YNALGMTEAAQNLENKM 457
               G T+ A  L + M
Sbjct: 557 LLKAGKTQEALKLLSGM 573



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 157/344 (45%), Gaps = 4/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L   ++ ++   LF  M S+   P    +  +V++  Q GL+D A   ++ M
Sbjct: 269 TYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHM 328

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C PD+ TYS ++       R D   ++L+ +   G +   + Y T++ G    ++
Sbjct: 329 -SEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQ 387

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +E  E   + MV S  C PD  T N++I++    G +++  K   + +  G   DI T N
Sbjct: 388 WEHAEELMAEMVCSD-CPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYN 446

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +          D    ++  +Q     P +VT+N +++        E  E+    M H 
Sbjct: 447 SIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHS 506

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P++ T+ +++++  + GL+++    L+ +  +  I +   +N ++ A  +AG  ++ 
Sbjct: 507 DCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEA 566

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +L   M      PD IT+ T+I      G  E A +L   M++
Sbjct: 567 LKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRVMVS 608



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 8/358 (2%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEV 139
           PVL++L      ++W+   ++F  +   +       TF  ++  L +    ++A  + + 
Sbjct: 272 PVLKSL---CGSERWKEVEELFAEMASNKCAPDE-VTFNTIVTSLCQQGLVDRAIKVVDH 327

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G  P +  Y++++      G +D+A   ++ +KS   CKPD   Y+ ++K      
Sbjct: 328 MSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYG-CKPDTIAYTTVLKGLCSIE 386

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           +++  E+++AEM         VT+NT+I    +    +        M E+G C+PDI T 
Sbjct: 387 QWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG-CNPDIVTY 445

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS+I    N   I+   +  +     G K DI T N L K       ++    +M  M  
Sbjct: 446 NSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMH 505

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P   T+N VI +  + G + +  E  K M   G  PN  TY  +V A  KAG   +
Sbjct: 506 SDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQE 565

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
              +L  + N    L T  +N +IS   +AG +E+  +L   M      PD IT+ ++
Sbjct: 566 ALKLLSGMTNGTPDLIT--YNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSL 621



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 3/310 (0%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P    +  L+ A    G + +A +  +DM     C P V TYSIL+ +  K   +     
Sbjct: 160 PDTFTFNPLIRALCVRGRVPDALAVFDDMLH-RGCSPSVVTYSILLDATCKASGYRQAMV 218

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +L EM   G E   VTYN +I+        +E  +  S +  S GC PD  T   ++ + 
Sbjct: 219 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDL-PSHGCKPDAVTYTPVLKSL 277

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             S   +++E+ + E        D  T N +  S  + G+ D+   V+D M +    P +
Sbjct: 278 CGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDI 337

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTY+ +++     G ++   E   ++K  G KP++I Y +++            + ++ +
Sbjct: 338 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE 397

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALG 445
           +  SD   D   FN +I++  Q G V++  ++   M E  C PD +T+ ++I    N   
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457

Query: 446 MTEAAQNLEN 455
           + +A + L N
Sbjct: 458 IDDAMELLSN 467



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 158/343 (46%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L    +   A  +F+ ML  G  PSV  Y+ L+ A  ++    +A   +++M
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEM 223

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C+PD+ TY++LI +       D    IL+++   G +  AVTY  ++     +++
Sbjct: 224 RA-KGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSER 282

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E+E  F+ M  S  C PD  T N+++++    G +++  K  +  +  G   DI T +
Sbjct: 283 WKEVEELFAEMA-SNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYS 341

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +       G  D    ++  ++     P  + Y  V++        E  EE   +M   
Sbjct: 342 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCS 401

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P+ +T+ +++++  + GL+ +   ++ Q+  +    D   +N II        ++  
Sbjct: 402 DCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDA 461

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            EL   ++   C PD +TF T+++   ++   E A+ L   M+
Sbjct: 462 MELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMM 504



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 9/357 (2%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LL + + Y  +  T     V+ G C  +Q E A  L   M+     P    +  ++++  
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           Q GL+D A   +  M S + C PD+ TY+ +I         D   ++L+ +   G +   
Sbjct: 419 QKGLVDRAIKVVEQM-SENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDI 477

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VT+NT++ G     ++E+ E     M+ S  C PD  T N++I++    G + +  +   
Sbjct: 478 VTFNTLLKGLCSVDRWEDAEQLMVNMMHSD-CPPDATTFNTVITSLCQKGLLLQAIETLK 536

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
                G   +  T NI+  +  +AG   +   ++  M      P ++TYN VI    KAG
Sbjct: 537 IMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTVISNITKAG 594

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +E+  +  + M   G+ P++ITY SL     +     +   +L ++++  +  D  F+N
Sbjct: 595 KMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYN 654

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ--AYNALGMTEAAQNLEN 455
            I+  + Q    +   + F  M    C+PD  T+  +++  AY  L + EA Q L N
Sbjct: 655 DILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECL-LDEAKQLLVN 710



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 165 LDEAFSTINDMKS---VSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           +D+A + ++ + S      C P  V   +ILIK      R    E++ A    LG   + 
Sbjct: 74  IDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFAT---LGASATV 130

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTYNT+++GY +A + E+     S M       PD FT N +I A    G +      ++
Sbjct: 131 VTYNTMVNGYCRAGRIEDARRLISGMPFP----PDTFTFNPLIRALCVRGRVPDALAVFD 186

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +    G    + T +IL  +  +A  Y +   ++D M+ +   P +VTYN++I      G
Sbjct: 187 DMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEG 246

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            +++       +   G KP+++TY  ++ +   +    +V+ +  ++ ++    D   FN
Sbjct: 247 DVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFN 306

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            I+++  Q G V++  ++   M E  C+PD +T+++++     +G  + A  L +++
Sbjct: 307 TIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRL 363


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 7/343 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+   L+ +  W +    TF  L+V   +  Q + A  LF+ M   G    V  Y AL+
Sbjct: 30  ALRYLSLMVRSGW-RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALI 88

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             + ++G +DEA     +M      +PD++ Y+ L+K   K  R +    +L  M  LG 
Sbjct: 89  EGFCETGRIDEAVELFGEMD-----QPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGW 143

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
             S   Y  ++D     +K +E E     M E G   P + T  ++I+AY   G +    
Sbjct: 144 RPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKG-LAPCVVTCTAVINAYCKEGRMSDAL 202

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           +      L G K ++ T N L + +   G   K  ++++ M+     P  VTYN++I   
Sbjct: 203 RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQ 262

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
              GHIE      + M+  G+  +  TY +L++A  K G   +  S+   +E   +  + 
Sbjct: 263 CIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNA 322

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             FN +I+   ++G V+   +    M    C PD  T+++ I+
Sbjct: 323 VTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIE 365



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 166/374 (44%), Gaps = 9/374 (2%)

Query: 71  KKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCK 128
           ++ K L  +P   A    +  + W+   K    + Q+ + +  A C   T   V+   CK
Sbjct: 136 RRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPC-VVTCTAVINAYCK 194

Query: 129 QPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           +   +  L   E+M   G KP+V  Y ALV  +   G + +A + +N M+ V    PD  
Sbjct: 195 EGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMR-VCGVNPDAV 253

Query: 187 TYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           TY++LI+  C   H  +   ++L  M   G+     TYN +I+   K  + ++  S F +
Sbjct: 254 TYNLLIRGQCIDGH-IESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDS 312

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           + E+ G  P+  T NS+I+    SG ++   K+  +    G   D  T +   +   +  
Sbjct: 313 L-ETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMK 371

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
              +  S +  M ++   P+ V Y IVI    K  +   +   + +M   G  P+ +TY 
Sbjct: 372 GSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYT 431

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           + + AY   G + + +++L ++  + V +DT  +N ++  +   G  +    +   M   
Sbjct: 432 TSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSV 491

Query: 426 HCVPDNITFATMIQ 439
             VP+  T+  +++
Sbjct: 492 ASVPNQFTYFILLR 505



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 155/399 (38%), Gaps = 58/399 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  + +QA  LF+ + + G+KP+   + +L++   +SG +D A+  +  M
Sbjct: 289 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKM 348

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S + C PD YTYS  I+   K          + EM    ++ S V Y  +I    K + 
Sbjct: 349 VS-AGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 407

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +  +  ++  MV SG C+PD+ T  + + AY   G + + E    E +  GV  D    N
Sbjct: 408 YGLVARTWGEMVSSG-CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 466

Query: 296 ILTKSYGRAGMYDKMRSVM----------------------------------------- 314
            L   +   G  D   S++                                         
Sbjct: 467 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 526

Query: 315 -----------DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
                      D M+K  F P   TY+ ++E F + G  E+       MK   +  N   
Sbjct: 527 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 586

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y +LV+ + K+   +    ++  +     I     +  ++S     G  +K  E+F+  +
Sbjct: 587 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSR 646

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
            +   PD I +  +I       + +   ++  +MI M E
Sbjct: 647 WKDYSPDEIVWKVIIDGL----IKKGHSDISREMIIMLE 681



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 125/304 (41%), Gaps = 44/304 (14%)

Query: 187 TYSILIKSCTKFHRFDLIEKI--LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           TY+ +I+S  +  R DL   +  L+ M   G    A T+N++I GY +  + +     F 
Sbjct: 13  TYNAVIRSLCR--RADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFD 70

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M   G    D+ +  ++I  +  +G I++  + + E +    + D+     L K   +A
Sbjct: 71  KMPLRGFAQ-DVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKA 125

Query: 305 G-------MYDKMR------------SVMDF-------------MQKRF---FFPTVVTY 329
           G       M  +M+            +V+DF             +Q+ F     P VVT 
Sbjct: 126 GRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTC 185

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             VI  + K G +       + MK RG KPN  TY +LV  +   G + K  ++L ++  
Sbjct: 186 TAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRV 245

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             V  D   +N +I      G +E    L   M+    + D  T+  +I A    G T+ 
Sbjct: 246 CGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQ 305

Query: 450 AQNL 453
           A +L
Sbjct: 306 ACSL 309



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 39/235 (16%)

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N++I +     ++    ++ +     G + D  T N L   Y R    D  R + D M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-- 375
             R F   VV+Y  +IE F + G I++  E F +M     +P+   Y +LV    KAG  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 376 -----------------------LIMKVDSILRQVENSDVILDTPF--------FNC--I 402
                                   ++      R+ + ++ +L   F          C  +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           I+AY + G +     +   MK R C P+  T+  ++Q +   G    A  L NKM
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 109/259 (42%), Gaps = 30/259 (11%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E  ++L E M  +G+      Y  L+  +   G  D A S +  M SV+   P+ +TY I
Sbjct: 445 EAENVLME-MSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASV-PNQFTYFI 502

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAV-----------------TYNTIIDGYGKA 233
           L++   +    + +  +     +  IE + V                 TY++I++G+ + 
Sbjct: 503 LLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSED 562

Query: 234 KKFEEMESSFSAMVE-SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKAD 290
            + EE  S  S M E S   + DI+T  ++++ +  S     ++ W    +++  G    
Sbjct: 563 GRTEEATSLVSLMKEDSISLNEDIYT--ALVTCFCKSKRY--LDAWVLVCSMIQHGFIPH 618

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEY 348
           + +   L       G  DK + +  FM  R+  + P  + + ++I+   K GH +   E 
Sbjct: 619 LMSYQHLLSGLICEGQTDKAKEI--FMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 676

Query: 349 FKKMKHRGMKPNSITYCSL 367
              ++    +P+  TY  L
Sbjct: 677 IIMLERMNCRPSHQTYAML 695


>gi|414881861|tpg|DAA58992.1| TPA: hypothetical protein ZEAMMB73_732512 [Zea mays]
          Length = 642

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 170/378 (44%), Gaps = 14/378 (3%)

Query: 76  LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQ-------QWYQAR----CQTFTKLMVML 124
           L P   L   +E ++ +   + L+  G +R+        +W Q R      +++     L
Sbjct: 65  LDPIAALNRFEEVLQTQDCNIILRHCGDIRRWDDLSKVFEWMQEREMTNAASYSSYFKYL 124

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G  + P +   ++  +    L+  V V  +++    ++G LD +F   ++M       PD
Sbjct: 125 GLSRDPARVLRVYGAIKDRTLRVHVSVCNSVLGCLVKNGRLDSSFKLYDEMIR-EGLSPD 183

Query: 185 VYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
            +TYS L+  C K  + +     ++ EM   G++   V Y T++         EE E  F
Sbjct: 184 PFTYSTLLAGCMKLKQGYTKAMGLINEMKSRGLQMDIVIYGTLLAICASHNYCEEAEVYF 243

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M + G   P++F  +S+++AY  + +  K E    +    G+  +   L  L K Y +
Sbjct: 244 QKMKDEGHS-PNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLTTLLKVYSK 302

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G+++K + ++  ++   F    + Y I+I+   K G I++    F +MK +G+K +   
Sbjct: 303 GGLFEKAKGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKGVKSDGYA 362

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           +  ++SA  + G   +   + ++ E+ +   D    N  +  Y    D+E +  +   M 
Sbjct: 363 FSIMISALHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKMD 422

Query: 424 ERHCVPDNITFATMIQAY 441
           E +  PDNITF T+I+ +
Sbjct: 423 ESNISPDNITFNTLIRYF 440



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 2/245 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+A + F+ M  +G  P++  Y++L++AY ++    +A   + D++S S   P+    + 
Sbjct: 237 EEAEVYFQKMKDEGHSPNLFHYSSLLNAYSENSDYGKAELLMKDLRS-SGLTPNKVMLTT 295

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+K  +K   F+  + +L E+   G     + Y  +IDG  K  K +E    F+ M E G
Sbjct: 296 LLKVYSKGGLFEKAKGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKG 355

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
               D +  + MISA    G+ ++ ++   EF       D+  LN   ++Y      + +
Sbjct: 356 -VKSDGYAFSIMISALHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESV 414

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M +    P  +T+N +I  F  A       +  + M  +G + N      ++  
Sbjct: 415 MRMLKKMDESNISPDNITFNTLIRYFCNAKVCHLAYKTVEDMHAKGHQLNEELCSHVMVQ 474

Query: 371 YSKAG 375
             KAG
Sbjct: 475 LGKAG 479



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 112/260 (43%), Gaps = 3/260 (1%)

Query: 116 TFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T++ L+    K KQ   +A  L   M S GL+  + +Y  L++        +EA      
Sbjct: 186 TYSTLLAGCMKLKQGYTKAMGLINEMKSRGLQMDIVIYGTLLAICASHNYCEEAEVYFQK 245

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK      P+++ YS L+ + ++   +   E ++ ++   G+  + V   T++  Y K  
Sbjct: 246 MKDEGH-SPNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLTTLLKVYSKGG 304

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            FE+ +   + + E+ G   D      +I      G I++    +NE    GVK+D    
Sbjct: 305 LFEKAKGLLTEL-EASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKGVKSDGYAF 363

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +I+  +  R G + + + +    +       +V  N  + T+     +E +    KKM  
Sbjct: 364 SIMISALHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKMDE 423

Query: 355 RGMKPNSITYCSLVSAYSKA 374
             + P++IT+ +L+  +  A
Sbjct: 424 SNISPDNITFNTLIRYFCNA 443


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 162/359 (45%), Gaps = 36/359 (10%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVYTYSILIKS 194
           ++  ML  G++PS+  Y  L+ ++ ++G +D+A + + DM++  + C P+  TY+++I  
Sbjct: 216 VYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVING 275

Query: 195 C-------------------------------TKFHRFDLIEK---ILAEMSYLGIECSA 220
                                           T     D +EK   +L EM   GI  + 
Sbjct: 276 LARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTV 335

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           VTYNT+IDG  K    E  +  F  M  + G  PD+ T NS+I+ Y  +GN+++    + 
Sbjct: 336 VTYNTLIDGLFKTGNAEAAQVKFDEM-RAKGLLPDLITYNSLINGYCKAGNLKQALCLFG 394

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +    G+   + T NIL   Y R G  +  R + + M +    P V TY I++       
Sbjct: 395 DLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVR 454

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
           ++  +  +F +M  +G++P+   Y + +SA    G I     +  ++    +  DT  +N
Sbjct: 455 NLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYN 514

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +I    + G ++    L++ M       D +T+  +I A+   G    A+N+ + M+A
Sbjct: 515 VLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVA 573



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-VESGGCHPDIFT 258
           R+D +  + ++M  LG+E S  TYNT++D + KA + ++  +    M   + GC P+  T
Sbjct: 209 RWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVT 268

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
            N +I+     G +EK  +  +   L   KA   T N L          +K  +++  M+
Sbjct: 269 YNVVINGLARKGELEKAAQLVDIMRL-SKKASAFTYNPLITGLLARDFVEKAGALLLEME 327

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                PTVVTYN +I+   K G+ E  +  F +M+ +G+ P+ ITY SL++ Y KAG + 
Sbjct: 328 NEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLK 387

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +   ++ + +      +N +I  Y + GD+E    L   M E  C+PD  T+  ++
Sbjct: 388 QALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILM 447

Query: 439 QA 440
             
Sbjct: 448 NG 449



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 157/379 (41%), Gaps = 37/379 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K    E A + F+ M + GL P +  Y +L++ Y ++G L +A     D+
Sbjct: 337 TYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDL 396

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K  +   P V TY+ILI    +    +   ++  EM+         TY  +++G    + 
Sbjct: 397 KR-AGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRN 455

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
              +   F  M+ S G  PD F  N+ ISA    G I    +   E  L G+ +D  T N
Sbjct: 456 LAMVRIFFDEML-SKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYN 514

Query: 296 ILTKSYGRAG-------MYDKM----------------------------RSVMDFMQKR 320
           +L     + G       ++ KM                            +++ D M   
Sbjct: 515 VLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVAS 574

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P+VVTY I I T+ + G++     +F+KM   G++PN +TY  L+ A  + G     
Sbjct: 575 GLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESA 634

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
                ++    ++ +   +  +I    + G+      L+  M ++   PD+ T   + + 
Sbjct: 635 YQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKG 694

Query: 441 YNALGMTEAAQNLENKMIA 459
           +    M +A Q LEN ++ 
Sbjct: 695 FGEGHMYDAVQYLENVVLG 713



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
           S+F  M   G   P +   N ++    ++   + M   Y++   +GV+  I T N L  S
Sbjct: 180 SAFQEMARHG-VAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 301 YGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           + +AG  D+  +++  M+ R     P  VTYN+VI    + G +EK  +    M+    K
Sbjct: 239 FCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMR-LSKK 297

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            ++ TY  L++       + K  ++L ++EN  ++     +N +I    + G+ E     
Sbjct: 298 ASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVK 357

Query: 419 FLTMKERHCVPDNITFATMIQAYNALG 445
           F  M+ +  +PD IT+ ++I  Y   G
Sbjct: 358 FDEMRAKGLLPDLITYNSLINGYCKAG 384



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           + E    GV   ++  N + +    A  +D MR+V   M +    P++ TYN ++++F K
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCK 241

Query: 339 AGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKVD---SILRQVENSDVI 393
           AG +++     K M+ R  G  PN +TY  +++  ++ G + K      I+R  + +   
Sbjct: 242 AGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAF 301

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
                +N +I+       VEK G L L M+    VP  +T+ T+I      G  EAAQ
Sbjct: 302 T----YNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQ 355


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 189/430 (43%), Gaps = 20/430 (4%)

Query: 16  HLPKFYKEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKN 75
           HL       V R+ A+  SP P++     +     L+   R  +A+  +  ++ +  Y++
Sbjct: 68  HLLDISLPVVLRLHAL--SPPPLRPF-FDRPFRSLLTHFSR--YALTPLMLRLFAHMYRH 122

Query: 76  LWPKPV---LEALDEAI-KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--Q 129
             P P      AL  A+ ++   + A +   L+ +  W   R   FT   ++LG C+  Q
Sbjct: 123 APPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGW---RPDAFTFNSLILGYCRTQQ 179

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
            E A  LF  M   G       Y AL+  + ++G +DEA     +M      +PD+YT++
Sbjct: 180 LEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT-----QPDMYTHA 234

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249
            L+K      R +    +L +M  LG   +   Y  ++D + + +K EE E   + M +S
Sbjct: 235 ALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDS 294

Query: 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
           G   P + T   +++AY   G +    + +      G + ++ T N + + +  AG   K
Sbjct: 295 G-LMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYK 353

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
             +++D M++    P VVTYN++I      GHI       + M+  G+  +  TY  L+ 
Sbjct: 354 AMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLID 413

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           A  K G + +  S+   +E   +  ++  FN +I+   +AG  +        M      P
Sbjct: 414 ALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAP 473

Query: 430 DNITFATMIQ 439
           D  T++  I+
Sbjct: 474 DTYTYSPFIE 483



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 151/362 (41%), Gaps = 41/362 (11%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++   + +  L+ +  + ++ E+A  +   M   GL P V   T +V+AY + G +  A 
Sbjct: 261 WRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAV 320

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                M+    C+P+V+TY+ +++      +      +L +M   G+E   VTYN +I G
Sbjct: 321 RVFESMR-FKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRG 379

Query: 230 YGKAKKFEEMESSFS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                    + S+F    ++E  G   D +T N +I A   +G +++    ++     G+
Sbjct: 380 QCIDG---HIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFM-------------------------QKRFF 322
           + +  T N +     +AG +D   + ++ M                         Q+  F
Sbjct: 437 RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLF 496

Query: 323 F----------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           F          P+ V Y IVI       +       + +M  +G  P+ +TY + V AY 
Sbjct: 497 FIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYC 556

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
             G + + ++++ +++    I+D   +N +I  +   G  ++   +   M     +P++ 
Sbjct: 557 NEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHF 616

Query: 433 TF 434
           TF
Sbjct: 617 TF 618



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 110/295 (37%), Gaps = 71/295 (24%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSI 190
           A+ ++  M+S G  P V  YT  V AY   G LDEA + + +MK    C+   D   Y+ 
Sbjct: 529 ATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKK---CRTIVDAMAYNT 585

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLG----------------------------------- 215
           LI   T   + D    IL  M+ +                                    
Sbjct: 586 LIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTI 645

Query: 216 ----------------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFT 258
                           +  SA TY +I++G+ + ++ +E+ S  S M E     + DI+ 
Sbjct: 646 ELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIY- 704

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRS 312
            N++++ +       K+  + + + L+      G   ++     L       G  D+ + 
Sbjct: 705 -NALVNCFC------KLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKE 757

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +    + + +    + + ++I+ F + GH +   +    ++    KP+  TY  L
Sbjct: 758 IFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAML 812


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 5/351 (1%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           ++    +   L+  L   K+ + A   F   L   + P +  +  ++S   + G L +A 
Sbjct: 152 HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 170 STINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL--IEKILAEMSYLGIECSAVTYNTI 226
               D+K+     P V TY+ LI   C K    ++  ++ +L EM   GI  +AVT+  +
Sbjct: 212 DVAKDIKAWG-LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVL 270

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I+GY K          F  M + G     + T NS+IS   + G +E+  K   E   +G
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQG-IAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLG 329

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  +  T   + K + + GM       +D M +R   P VV Y I+I+ + + G +E   
Sbjct: 330 LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAM 389

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              + M  +G+ PN  TY  L++ +S++G       +L +++   +  D   +N +I A 
Sbjct: 390 AVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              G+V K  +L   M E    P+++T+ T+IQ +   G  ++A  +  +M
Sbjct: 450 CCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 160/373 (42%), Gaps = 6/373 (1%)

Query: 89  IKQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           +  K+  LA K F   LR++        TF  ++  L +  Q  +A  + + + + GL P
Sbjct: 167 VGAKRVDLAEKAFRSALRRR--VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAP 224

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTYSILIKSCTKFHRFDLIE 205
           SV  Y +L+  Y + G     +     +K + +    P   T+ +LI    K        
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAV 284

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           ++  EM   GI  S VTYN++I G     K EE       M E  G  P+  T   ++  
Sbjct: 285 RVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM-EDLGLSPNEITFGCVLKG 343

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +   G +     W +      V+ D+    IL   Y R G  +   +V + M K+   P 
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPN 403

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V TYN +I  F ++G          +MK +G++ + +TY  L+ A    G + K   +L 
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++    +  +   +N II  +   G+++   E+   M++     + +T+   I+ +  +G
Sbjct: 464 EMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIG 523

Query: 446 MTEAAQNLENKMI 458
             + A +L N+M+
Sbjct: 524 KMDEANDLLNEML 536


>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
 gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
          Length = 426

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 151/304 (49%), Gaps = 1/304 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A ++   M   G+  +  +Y  L+ +Y +S  ++EA    ++M++    KP   T++I
Sbjct: 63  KEALIIQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQA-KGLKPTSATFNI 121

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+ + ++  + D+IEK+L EM   G+  +A +Y  +I  YG+ KK  +M +     ++  
Sbjct: 122 LMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKA 181

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P  ++  ++I AY  SG  EK    +      G+K  I+T   L  ++ RAG    +
Sbjct: 182 GIKPTSYSYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTL 241

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             +   M +     T VT+NI+++ F K GH  +  +   + K  G+ P  +TY  L++A
Sbjct: 242 MDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNA 301

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           Y++ G   K+  +L+++    +  D+  +  +I AY +  D  +       M +   VPD
Sbjct: 302 YARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPD 361

Query: 431 NITF 434
             ++
Sbjct: 362 AKSY 365



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 125/286 (43%), Gaps = 17/286 (5%)

Query: 180 DCKPDVYTYSILI-----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---G 231
           +  PD  T  I+I     K CT    ++  E+    M+  G++ S      +I  +   G
Sbjct: 5   NVSPDHVTCCIMITVMRKKGCTAKEAWEFFER----MTRKGVKWSPEVLGALIKSFCDEG 60

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
             K+   +++     +E  G   +    N+++ +Y  S  IE+ E  Y+E    G+K   
Sbjct: 61  LKKEALIIQTE----MERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTS 116

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME-EYFK 350
            T NIL  +Y R    D +  ++  MQ     P   +Y  +I  +G+   +  M  + F 
Sbjct: 117 ATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFL 176

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +MK  G+KP S +Y +L+ AYS +G   K       ++   +      +  ++ A+ +AG
Sbjct: 177 RMKKAGIKPTSYSYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAG 236

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
           D + + +++  M         +TF  ++  +   G    A+++ N+
Sbjct: 237 DTKTLMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINE 282



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 115/282 (40%), Gaps = 14/282 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG-QSGLLDEAFSTIND 174
           TF  LM    +  QP+    L   M   GL P+   YT L+SAYG Q  + D A      
Sbjct: 118 TFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLR 177

Query: 175 MKSVSDCKPDVYTYSILIK--SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
           MK     KP  Y+Y+ LI   S + +H    I      M   GI+ S  TY T++D + +
Sbjct: 178 MKKAG-IKPTSYSYTALIHAYSVSGWHEKAYI--TFENMQREGIKPSIETYTTLLDAFRR 234

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A   + +   +  M+          T N ++  +   G+  +     NEF   G+   + 
Sbjct: 235 AGDTKTLMDIWKLMMREK-VEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVM 293

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N+L  +Y R G   K+  ++  M      P  +TY  +I  + +     +   Y K M
Sbjct: 294 TYNMLMNAYARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMM 353

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
              G  P++        +Y K   I+ V + ++   +   IL
Sbjct: 354 VKSGKVPDA-------KSYQKLRAILDVKAAIKNRRDKSAIL 388


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 169/360 (46%), Gaps = 39/360 (10%)

Query: 96  LALKIFG-LLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           LA K F  ++ +Q    A+ +  + ++  LG+  +   A  LFE    +G   +V  ++A
Sbjct: 159 LATKCFDFIIWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSA 218

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++SAYG++G                                   H  D ++ +   M   
Sbjct: 219 MISAYGRNG-----------------------------------HFSDAVD-LFRSMRSW 242

Query: 215 GIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
           G+  + ++YN++ID   K +  F+ +   F  M+  G   PD  T NS++S   + G  E
Sbjct: 243 GVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEG-IVPDRLTYNSLLSVCASKGMWE 301

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
             +K  +E +  G+  D  T N    +  + G  D  R V++ M  R  +PTVVTY+ +I
Sbjct: 302 TAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMI 361

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           +   KA  +E     +++MK R +  + ++Y ++V  Y+K G   +     +++E+  + 
Sbjct: 362 DGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMK 421

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N ++S YG+ G  +++  LF  MK  +  P+ +T++TMI  Y   GM + A ++
Sbjct: 422 RDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDV 481



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 2/278 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
            F+ ML++G+ P    Y +L+S     G+ + A   +++M      + D +TY+  + + 
Sbjct: 271 FFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVR-DAFTYNTYLDTL 329

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  + DL  ++L EMS   +  + VTY+T+IDG  KA   E+  + +  M +      D
Sbjct: 330 CKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEM-KLRSISVD 388

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             + N+M+  Y   G  ++      E    G+K D+ T N L   YGR GMYD++R + +
Sbjct: 389 RVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFE 448

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+    +P  +TY+ +I+ + K G  ++  + +K  K   ++ + + Y S++ +  K G
Sbjct: 449 EMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNG 508

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
           L+     +L  +    +  +   FN II A  Q+  +E
Sbjct: 509 LVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLE 546



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           L   DEAI Q K    ++  G+ R          T+  L+   G+    ++   LFE M 
Sbjct: 402 LGRFDEAIGQCK---EMESCGMKRD-------VVTYNALLSGYGRYGMYDEVRRLFEEMK 451

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           +  + P+   Y+ ++  Y + G+  EA     D K  +  + DV  Y+ +I S  K    
Sbjct: 452 AWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKK-AQLEVDVVFYTSIIDSLCKNGLV 510

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +    +L  M   GI+ + VT+N+IID   ++   E      S  VE
Sbjct: 511 ESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAVE 557


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 2/333 (0%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           G+  + ++A  +FE M     +PSV  Y A+++   +SG   +A      MK+V    PD
Sbjct: 87  GRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVG-IVPD 145

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           VYT++I IKS  +  R     ++L  M   G + +AV Y T++ G+ +     E    F+
Sbjct: 146 VYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFN 205

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M+  G   PD+ T N ++      G +++ E+  N+    G+ +++ T NI  +   R 
Sbjct: 206 DMLRIG-IFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRK 264

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           GM     S++D + +    P VVTYN +I    K  ++ + E+Y  K+ + G++P+  TY
Sbjct: 265 GMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTY 324

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+  Y K G++   + IL+       + D   +  +I+   Q  ++++   LF     
Sbjct: 325 NTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALG 384

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +   P  I +  +I+     G+   A  + N+M
Sbjct: 385 KGLKPTVILYNMLIKGLCQEGLILQALQMMNEM 417



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 154/345 (44%), Gaps = 40/345 (11%)

Query: 117 FTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G C+  E  +A  LF   L  GLKP+V +Y  L+    Q GL+ +A   +N+
Sbjct: 357 FTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNE 416

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M S + C  D++T                                   YN +I+G  K  
Sbjct: 417 M-SENGCSSDIWT-----------------------------------YNLVINGLCKMG 440

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              +  +  +  +  G   PD+FT N++I  Y     +E   +  N+    GV  D+ T 
Sbjct: 441 CVSDANNLMNDAIAKGYV-PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITY 499

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +     +A   + +    + M ++   P  +TYNI+ E+  KAG + +  +   ++ +
Sbjct: 500 NSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILN 559

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAGDVE 413
           +G+ P+++++ +++S ++  G +     + R++ E   V   T  +N +I+A+ +  D+ 
Sbjct: 560 KGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLH 619

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              +LFL M    C PD  T+  MI  +   G T++      +MI
Sbjct: 620 MGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMI 664



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF KL+  L K  + +++  L   +L  G+  ++  +   +    + G+L  A S ++ +
Sbjct: 218 TFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSV 277

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV TY+ LI    K       EK L ++   G+E    TYNT+IDGY K   
Sbjct: 278 IR-EGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGM 336

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +  E      +  G   PD FT  S+I+    +  I++    +N     G+K  +   N
Sbjct: 337 LQNAEKILQGAICKGFV-PDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYN 395

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L K   + G+  +   +M+ M +      + TYN+VI    K G +            +
Sbjct: 396 MLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAK 455

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+  T+ +L+  Y K   +     IL ++ +  V  D   +N +++   +A   E +
Sbjct: 456 GYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDL 515

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            E F TM E+ CVP+ IT+  + ++    G    A +L ++++
Sbjct: 516 METFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEIL 558



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT  +    + K+P  A  L   M+S G + +   Y  +V+ + +     EA+   NDM
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDM 207

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +    PDV T++ L+ +  K       E++L ++   G+  +  T+N  I G  +   
Sbjct: 208 LRIG-IFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGM 266

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                S   +++  G   PD+ T N++I     + N+ + EK+ ++    G++ D  T N
Sbjct: 267 LSGAMSMLDSVIREG-LTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYN 325

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   Y + GM      ++     + F P   TY  +I    +   I++    F     +
Sbjct: 326 TLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGK 385

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KP  I Y  L+    + GLI++   ++ ++  +    D   +N +I+   + G V   
Sbjct: 386 GLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDA 445

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             L      +  VPD  TF T+I  Y      E    + NKM
Sbjct: 446 NNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKM 487



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 130/324 (40%), Gaps = 39/324 (12%)

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV--TYN 224
           +A    N +K     K  + TY  +I+       F  +E +LAE + + I+ S +   Y 
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAE-TRMDIDNSLLEGVYI 80

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
             +  YG+  K +E    F  M +   C P + + N++++    SG  ++  K +     
Sbjct: 81  GAMKSYGRKGKVQEAVDVFERM-DFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKN 139

Query: 285 MGVKADIQTLNILTKSYGR------------------------------AGMYDKMRSVM 314
           +G+  D+ T  I  KS+ R                              AG Y++   V 
Sbjct: 140 VGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVE 199

Query: 315 DF-----MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
            +     M +   FP V T+N ++ T  K G +++ E    K+  +GM  N  T+   + 
Sbjct: 200 AYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQ 259

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              + G++    S+L  V    +  D   +N +I    +  +V +  +    +      P
Sbjct: 260 GLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEP 319

Query: 430 DNITFATMIQAYNALGMTEAAQNL 453
           D  T+ T+I  Y  +GM + A+ +
Sbjct: 320 DGFTYNTLIDGYCKMGMLQNAEKI 343



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 14/257 (5%)

Query: 116 TFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            FT   ++ G CKQ   E    +   M S G+ P V  Y ++++   ++   ++   T  
Sbjct: 461 VFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFE 520

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 229
            M     C P+  TY+IL +S  K  +     DL+++IL +    GI    V++ TII G
Sbjct: 521 TMVE-KGCVPNKITYNILTESLCKAGKVNEALDLVDEILNK----GITPDTVSFATIISG 575

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +      +     F  M E         T N MI+A+    ++   EK + E    G   
Sbjct: 576 FANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAP 635

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T  ++   +   G  D     +  M ++ F P++ T+  VI        + +  +  
Sbjct: 636 DTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDII 695

Query: 350 KKMKHRGMKP---NSIT 363
             M H G+ P   NSI+
Sbjct: 696 HFMVHNGIVPEVVNSIS 712



 Score = 38.1 bits (87), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI---TYCSLVSAYSKAGLIM 378
           F  +++TY  +I+  G  G+   ME    +   R    NS+    Y   + +Y + G + 
Sbjct: 36  FKHSLLTYKCIIQKLGFHGNFVAMENVLAET--RMDIDNSLLEGVYIGAMKSYGRKGKVQ 93

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  +++  +       +N I++   ++G  ++  ++FL MK    VPD  TF   I
Sbjct: 94  EAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRI 153

Query: 439 QAYNALGMTEAAQNLENKMIA 459
           +++       +A  L N M++
Sbjct: 154 KSFCRTKRPHSALRLLNNMVS 174


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLS 142
           +D   K  +   A  +F  ++++  +      FT   +++G C       A  L + ML 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFP---DLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P V  Y AL++A+ + G   EA    ++M       P+  TYS +I    K +R D
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLD 377

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E +   M+  G   + +T+NT+IDGY  AK+ ++       M E+G    D  T N++
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG-LVADTTTYNTL 436

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK--- 319
           I  +   G++        E    G+  DI T + L       G       +   MQK   
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 320 --------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                       P V TYNI+I      G   + EE +++M HRG+ P++ITY S++   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T+I  +  +G    A ++  +MI+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 160/378 (42%), Gaps = 38/378 (10%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q RC   +FT L+     C +   A   F  +   GL P V  +  L+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLH 157

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA +  + M   + C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 158 GLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 218 CSAVTYNTIIDGYGKA----------KKFEEMESS------FSAMVES------------ 249
            + +TY TI+DG  K           +K EE+         +SA+++S            
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 250 -------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   G  PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ 
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFV 336

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G + +   + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLI 396

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T+ +L+  Y  A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 423 KERHCVPDNITFATMIQA 440
                 PD +T  T++  
Sbjct: 457 ISSGLCPDIVTCDTLLDG 474



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 13/320 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 252 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 300
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 421 TMKERHCVPDNITFATMIQA 440
            M      PD IT   M+  
Sbjct: 641 EMISSGVYPDTITIRNMLTG 660



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 243 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++ILIK      +         +++ LG+    VT+NT++ G     +  E  + F  M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 308 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 3/305 (0%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++  +I  +    K     S+F  + + G  HPD+ T N+++        + +
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFNTLLHGLCVEDRVSE 167

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 335 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 454 ENKMI 458
            ++M+
Sbjct: 348 YDEML 352


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLS 142
           +D   K  +   A  +F  ++++  +      FT   +++G C       A  L + ML 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFP---DLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P V  Y AL++A+ + G   EA    ++M       P+  TYS +I    K +R D
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLD 377

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E +   M+  G   + +T+NT+IDGY  AK+ ++       M E+G    D  T N++
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG-LVADTTTYNTL 436

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK--- 319
           I  +   G++        E    G+  DI T + L       G       +   MQK   
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 320 --------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                       P V TYNI+I      G   + EE +++M HRG+ P++ITY S++   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T+I  +  +G    A ++  +MI+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 160/378 (42%), Gaps = 38/378 (10%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q RC   +F  L+     C +   A   F  +   GL P V  +T L+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH 157

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA +  + M   + C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 158 GLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 218 CSAVTYNTIIDGYGKA----------KKFEEMESS------FSAMVES------------ 249
            + +TY TI+DG  K           +K EE+         +SA+++S            
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 250 -------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   G  PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ 
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFV 336

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G + +   + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLI 396

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T+ +L+  Y  A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 423 KERHCVPDNITFATMIQA 440
                 PD +T  T++  
Sbjct: 457 ISSGLCPDIVTCDTLLDG 474



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 13/320 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 252 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 300
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 421 TMKERHCVPDNITFATMIQA 440
            M      PD IT   M+  
Sbjct: 641 EMISSGVYPDTITIRNMLTG 660



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 243 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 145/330 (43%), Gaps = 9/330 (2%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E  + F  M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMF 176

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 308 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 3/305 (0%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++N +I  +    K     S+F  + + G  HPD+ T  +++        + +
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFTTLLHGLCVEDRVSE 167

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 335 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 454 ENKMI 458
            ++M+
Sbjct: 348 YDEML 352


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 163/360 (45%), Gaps = 7/360 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLG--KCKQPEQASLLFEVMLSDG-LKPSVDVYTALVS 157
           F LLR+      +C   T  +++ G  +C +  QA   F+  L     +P V  YT L++
Sbjct: 45  FSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLIN 104

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
              + G +D AF     M +   C+P+ +TY+ L+    K  R D    ++ E       
Sbjct: 105 GLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFA 164

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
              VTYNT++    +  + +E  ++F+ M E G   P + + N++I+    +  +    +
Sbjct: 165 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYV-PTLVSFNAIITGLCRARRLADALE 223

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            +NE        ++ T +++     ++   D+ + ++D M      P +V Y  ++  F 
Sbjct: 224 VFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFS 283

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
            AG ++      ++M  +G  P+ +TY  ++    K G +     I R++  +    +  
Sbjct: 284 AAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVV 343

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++ +I  Y +A  V++ G++   M+E  C P+ +T+ TMI   + +   E A  +  +M
Sbjct: 344 TYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREM 400



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 138/318 (43%), Gaps = 2/318 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-DL 203
           L  S   Y  L+  +  +  LD AFS + +M  V   + +  T SI+++   +  R    
Sbjct: 21  LPASSVTYNVLIRGFCNASDLDAAFSLLREM-DVEGMQCNDRTTSIILQGLCRCGRVAQA 79

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           +E   A +     +   V+Y T+I+G  K  + +     F  MV +GGC P+ FT N+++
Sbjct: 80  LEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALV 139

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
                   ++       E        D+ T N L  +  + G  D+  +    M +  + 
Sbjct: 140 DGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYV 199

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+V++N +I    +A  +    E F +M  R   PN +TY  ++    K+  + +   +
Sbjct: 200 PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 259

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L ++ +     D   +  ++  +  AG ++    L   M  + C+PD +T+  +I     
Sbjct: 260 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319

Query: 444 LGMTEAAQNLENKMIAMK 461
           +G  + A  +  +++A K
Sbjct: 320 VGRVDDAHEIFRELVANK 337


>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
          Length = 600

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 167/377 (44%), Gaps = 43/377 (11%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW +  +I   LR Q W+      F  L+   GK     +A  + + M   G +PSV  
Sbjct: 118 KKWNIVSEILEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVIS 177

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--------DL 203
            T L+ AYG+     +A +    M++ S  +P   TY I++KS  +  ++        DL
Sbjct: 178 QTGLMEAYGRGKQYRKAEAVFRRMQT-SGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDL 236

Query: 204 I------------------------------EKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           +                               K+ A+MS  GI  S VT+N+++      
Sbjct: 237 LNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF---E 293

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +++E+ + +  M +  G  PD+ + + +I AYG +   E+    + E    GV+   ++
Sbjct: 294 TEYKEVSNIYDQM-QRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKS 352

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            NIL  ++  +G+ ++  +V   M++    P + +Y  ++  +  A  +   E++F+++K
Sbjct: 353 YNILLDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIK 412

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KPN + Y +L+  YSK   + KV  +  ++    V  +   +  I+ A G+  D  
Sbjct: 413 EDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDAQGRNSDFG 472

Query: 414 KMGELFLTMKERHCVPD 430
                F  M+ R   PD
Sbjct: 473 NAVIWFKEMEARGYPPD 489



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 87/182 (47%), Gaps = 2/182 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +++ L+   GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SGL++EA +    M
Sbjct: 317 SYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAM 376

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +     +PD+ +Y+ ++ +       +  EK    +   G++ + V Y T++ GY K   
Sbjct: 377 RR-HRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNN 435

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E++   +  M    G  P+     +++ A G + +      W+ E    G   D +  N
Sbjct: 436 LEKVMRVYERM-RIQGVEPNQTIYTTIMDAQGRNSDFGNAVIWFKEMEARGYPPDQKAKN 494

Query: 296 IL 297
           IL
Sbjct: 495 IL 496



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +++AYG  G+  + E+     N  G +  + +   L ++YGR   Y K  +V   MQ   
Sbjct: 146 LVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSG 205

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKPNSITYCSLVSAYSKAGLIM 378
             P+ VTY I++++  +    ++ E  F+ +   K    KP+   +  ++  Y KAG   
Sbjct: 206 PQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYA 265

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           +   +  Q+    + L T  FN ++S   +  +V     ++  M+     PD ++++ +I
Sbjct: 266 QARKLFAQMSERGIPLSTVTFNSLMSFETEYKEV---SNIYDQMQRAGLKPDVVSYSLLI 322

Query: 439 QAYNALGMTEAA 450
           +AY      E A
Sbjct: 323 KAYGKARREEEA 334


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 154/323 (47%), Gaps = 8/323 (2%)

Query: 140 MLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSC 195
           M  DG    P V  Y+ +++ + + G LD+ +ST N+M  K +S   P+V TY+ +I + 
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRIS---PNVVTYNSIIAAL 57

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K    D   ++L  M   G+    +TYN+I+ G+  + + +E    F   + S G  PD
Sbjct: 58  CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE-AIVFLKKMRSDGVEPD 116

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS++     +G   +  K ++     G+K DI T   L + Y   G   +M  ++D
Sbjct: 117 VVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLD 176

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M +    P    ++I++  + K   +E+    F KM+ +G+ PN++TY +++    K+G
Sbjct: 177 LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSG 236

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +        Q+ +  +  D+  +N +I +       EK  ELFL M +R      I F 
Sbjct: 237 RVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFN 296

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           ++I ++   G    +  L + M+
Sbjct: 297 SIIDSHCKEGRVIESVKLFDLMV 319



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 111/250 (44%), Gaps = 2/250 (0%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C T+  ++       QP++A +  + M SDG++P V  Y +L+    ++G   EA    +
Sbjct: 82  CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 141

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M      KPD+ TY  L++          +  +L  M   GI  +   ++ ++  Y K 
Sbjct: 142 SMTK-RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 200

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           +K EE    FS M +  G +P+  T  ++I     SG +E    ++ +    G++ D   
Sbjct: 201 EKVEEAMLVFSKMRQQ-GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIV 259

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L  S      ++K   +   M  R    + + +N +I++  K G + +  + F  M 
Sbjct: 260 YNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMV 319

Query: 354 HRGMKPNSIT 363
             G+KP+ IT
Sbjct: 320 RIGVKPDIIT 329



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 37/214 (17%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  LM  L K  +  +A  +F+ M   GLKP +  Y  L+  Y   G L E    + D+
Sbjct: 119 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DL 177

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-- 233
              +   P+ Y +SIL+ +  K  + +    + ++M   G+  +AVTY T+ID   K+  
Sbjct: 178 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 237

Query: 234 ---------------------------------KKFEEMESSFSAMVESGGCHPDIFTLN 260
                                             K+E+ E  F  M++ G C   IF  N
Sbjct: 238 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF-FN 296

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           S+I ++   G + +  K ++    +GVK DI TL
Sbjct: 297 SIIDSHCKEGRVIESVKLFDLMVRIGVKPDIITL 330



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 38/170 (22%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           KQ+K + A+ +F  +RQQ        T+  ++ +L K  + E A L FE M+ +GL+P  
Sbjct: 199 KQEKVEEAMLVFSKMRQQGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP-- 255

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
                                             D   Y+ LI S   F +++  E++  
Sbjct: 256 ----------------------------------DSIVYNSLIHSLCIFDKWEKAEELFL 281

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           EM   GI  S + +N+IID + K  +  E    F  MV   G  PDI TL
Sbjct: 282 EMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRI-GVKPDIITL 330


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 54/385 (14%)

Query: 125 GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G CK    +    LF  M   G+ P++  Y  ++  +  SG    A   + +M  + +S 
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS- 320

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             P+V TY+ LI +  K  +F    ++  EM   GI  + +TYN++IDG+ K  + +  E
Sbjct: 321 --PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M  + GC PD+FT  ++I  Y  +  I+   +  +E    G+ A+  T N L   
Sbjct: 379 DMFYLMA-TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 301 YGRAG------------------------------------------MYDKM-RSVMDFM 317
           +   G                                          M+  M +S MD  
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 497

Query: 318 QKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
               F    P V+TYNI+I      G   + EE +++M HRG+ P++ITY S++    K 
Sbjct: 498 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
             + +   +   + +     +   FN +I+ Y +AG V+   ELF  M  R  V D I +
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
            T+I  +  +G    A ++  +MI+
Sbjct: 618 ITLIYGFRKVGNINGALDIFQEMIS 642



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTL 399

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM   G+  + VTYNT+I G+               M+ SG 
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 298
           C PDI T N+++    ++G ++   + +             + FN  GV+ D+ T NIL 
Sbjct: 460 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN--GVEPDVLTYNILI 516

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN +T+ +L++ Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 419 FLTMKERHCVPDNITFATMIQAY 441
           F  M      PD IT   M+  +
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGF 659



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 182/439 (41%), Gaps = 23/439 (5%)

Query: 30  AIKRSPGPIQELGIQKEAEKDLSKILRT-EFAIKNIEKKVSSKKYKNLWPKPVLEALD-- 86
           A K   G   E G + E+ K     LR+  + IK +E  +       L  +P+   +D  
Sbjct: 32  AEKSRDGESGEAGFRGESLK-----LRSGSYEIKGLEDAIDLFS-DMLRSRPLPSVIDFN 85

Query: 87  ----EAIKQKKWQLALKIFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVM 140
                 ++ ++  L + ++   ++ +  Q RC   +FT L+     C +   A   F  +
Sbjct: 86  KLMGAVVRMERPDLVISLY---QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKL 142

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              GL P V  +T L+        + EA    + +     C+PDV T++ L+    +  R
Sbjct: 143 TKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-----CRPDVLTFTTLMNGLCREGR 197

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                 +L  M   G++   +TY T +DG  K        +    M E     P++   +
Sbjct: 198 VVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYS 257

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I      G        + E    G+  +I T N +   +  +G +   + ++  M +R
Sbjct: 258 AIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER 317

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VVTYN +I  F K G   +  E + +M  RG+ PN+ITY S++  + K   +   
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + +   +       D   F  +I  Y  A  ++   EL   M  R  V + +T+ T+I  
Sbjct: 378 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 441 YNALGMTEAAQNLENKMIA 459
           +  +G   AA +L  +MI+
Sbjct: 438 FCLVGDLNAALDLSQQMIS 456



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 119/298 (39%), Gaps = 42/298 (14%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L++A    +DM   S   P V  ++ L+ +  +  R DL+  +  +M    I C   ++ 
Sbjct: 62  LEDAIDLFSDMLR-SRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFT 120

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I  +    K     S+F  + + G  HPD+ T  ++                     L
Sbjct: 121 ILIKCFCSCSKLPFALSTFGKLTKLG-LHPDVVTFTTL---------------------L 158

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+  D                  ++   +D   +    P V+T+  ++    + G + +
Sbjct: 159 HGLCLD-----------------HRVSEALDLFHQ-ICRPDVLTFTTLMNGLCREGRVVE 200

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCII 403
                 +M   G++P+ ITY + V    K G  +   ++LR++E  S +  +   ++ II
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
               + G       LF+ M+++   P+ +T+  MI  +   G   AAQ L  +M+  K
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 160/357 (44%), Gaps = 35/357 (9%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           ++ VM+   ++P++  +  ++ +  + G +  A   ++ M+    C P+  +Y++L+   
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFG-CDPNDVSYNVLVNGL 252

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG---- 251
           +    FD  ++++ +MS LG++ SA TYN +I G+ K + FEE       M+  G     
Sbjct: 253 SGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTV 312

Query: 252 ----------CH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNE 281
                     C                     PD+ + N++I  Y   GN  +    ++E
Sbjct: 313 VTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSE 372

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
                +   + T N L     R G  D  + + D M K    P VVT+ I++  F + G+
Sbjct: 373 LRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGN 432

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
           +   +E F +M  RG+KP+ I Y + +    K G   K   +  +++      D   +N 
Sbjct: 433 LPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNV 492

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +I+   + G+ +   EL   M+    VPD++T+ ++I A+   G+   A+ + + M+
Sbjct: 493 LINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDML 549



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 159/338 (47%), Gaps = 16/338 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A LLF  + S  L PSV  Y  L+    ++G LD A    +DM     C PDV T++IL
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLC-PDVVTFTIL 423

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKF---EEMESSFS 244
           ++   +     + +++  EM   G++   + Y T I G  K    +K F   EEM++   
Sbjct: 424 VRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAE-- 481

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
                 G  PD+ T N +I+     GN +   +   +  L G+  D  T   +  ++  +
Sbjct: 482 ------GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G+  K   V   M K+   P+VVTY ++I ++   G ++  ++YF +M+ +G+ PN ITY
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +L+    K  ++    ++  ++E+  V  +   +  +I+        +   +L+  M +
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLD 655

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462
           R   PD+ T + +++  +      A   LEN  +A+ E
Sbjct: 656 REIKPDSCTHSALMKHLSKDYKLLAVLRLENLPLAIVE 693



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/312 (19%), Positives = 143/312 (45%), Gaps = 2/312 (0%)

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           SV +   L+  + +  +L++       M + +   PDV   + ++K        + +E++
Sbjct: 136 SVKLLDLLIQVFAKKLILEKCLMVFYKMVN-NGLLPDVRNCNRVLKLLKDKSMVNEVEEV 194

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
            + M    I  + VT+NT++D   K  +          M    GC P+  + N +++   
Sbjct: 195 YSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVM-RMFGCDPNDVSYNVLVNGLS 253

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G  ++ ++   + +++G+K    T N L + + +  M+++   +   M  R   PTVV
Sbjct: 254 GKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVV 313

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TYN ++ +  + G +     Y   M +  + P+ ++Y +L+  YS+ G   +   +  ++
Sbjct: 314 TYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL 373

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            + +++     +N +I    + G+++    +   M +    PD +TF  +++ +  +G  
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNL 433

Query: 448 EAAQNLENKMIA 459
             A+ L ++M++
Sbjct: 434 PMAKELFDEMLS 445


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 158/342 (46%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++  L K      A  L + M   G KP+V  Y  ++ +  +  L+ EA    ++M
Sbjct: 47  TYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEM 106

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV+TYS ++       R +    +  +M    +  + VT+  +IDG  K + 
Sbjct: 107 VK-EGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRM 165

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M E G   PD++T N+++  Y +   +++ +K +N  +  G   ++++ N
Sbjct: 166 ISEAWLVFETMTEKG-LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYN 224

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL   + ++G  D+ + ++  M  +   P + TY+ ++  F + G  ++ +E  K+M   
Sbjct: 225 ILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSY 284

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN ITY  ++    K G + +   +L+ ++ S +  +   +  +I      G +E  
Sbjct: 285 GLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAA 344

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ELF  +  +   P  +T+  MI      G++  A  L  +M
Sbjct: 345 RELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREM 386



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 150/328 (45%), Gaps = 2/328 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A   F  M+ +G+ P V  Y++++  +   G ++EA S    M    +  P+  T++IL
Sbjct: 98  EAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVE-RNVIPNKVTFTIL 156

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I    K         +   M+  G+E    TYN ++DGY    + +E +  F+ M +  G
Sbjct: 157 IDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM-DRKG 215

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P++ + N +I+ +  SG I++ +    E +   +  DI T + L + + + G   + +
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQ 275

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            ++  M      P ++TY+IV++   K GH+++  E  K M+   ++PN   Y  L+   
Sbjct: 276 ELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGM 335

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G +     +   +    +      +  +IS   + G   +  ELF  M    C+P++
Sbjct: 336 CTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNS 395

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
            T+  +IQ +   G T  A  L  +M+ 
Sbjct: 396 CTYNVIIQGFLRNGDTPNAVRLIEEMVG 423



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 155/349 (44%), Gaps = 37/349 (10%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   GL+P++  +  L+S       + +A    ++M  +   +PDV TYS +I    K  
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMG 59

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
              +  ++L +M   G + + V YNTIID   K +   E    FS MV+  G  PD+FT 
Sbjct: 60  NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKE-GIPPDVFTY 118

Query: 260 NSMISAYGNSGNIEKMEKWYNE------------FNLM---------------------- 285
           +S++  + N G + +    + +            F ++                      
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 286 -GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G++ D+ T N L   Y      D+ + + + M ++   P V +YNI+I    K+G I++
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
            +    +M H+ + P+  TY +L+  + + G   +   +L+++ +  ++ +   ++ ++ 
Sbjct: 239 AKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
              + G +++  EL   M+E    P+   +  +I+     G  EAA+ L
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAREL 347



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 147/320 (45%), Gaps = 4/320 (1%)

Query: 117 FTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           FT   ++ G C   +  +A+ LF+ M+   + P+   +T L+    +  ++ EA+     
Sbjct: 116 FTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFET 175

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M      +PDVYTY+ L+       + D  +K+   M   G   +  +YN +I+G+ K+ 
Sbjct: 176 MTE-KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSG 234

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E +   + M       PDIFT ++++  +   G  ++ ++   E    G+  ++ T 
Sbjct: 235 RIDEAKGLLAEMSHKS-LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITY 293

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           +I+     + G  D+   ++  MQ+    P +  Y I+IE     G +E   E F  +  
Sbjct: 294 SIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFV 353

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G++P  +TY  ++S   K GL  +   + R++  +  + ++  +N II  + + GD   
Sbjct: 354 KGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPN 413

Query: 415 MGELFLTMKERHCVPDNITF 434
              L   M  +    D+ TF
Sbjct: 414 AVRLIEEMVGKGFSADSSTF 433



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 1/247 (0%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M  LG++ + VT+NT++ G     K  +    F  MV+ G   PD+ T +++I+     G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMG 59

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N     +   +    G K ++   N +  S  +  +  +       M K    P V TY+
Sbjct: 60  NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            ++  F   G + +    FK+M  R + PN +T+  L+    K  +I +   +   +   
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  D   +N ++  Y     +++  +LF  M  + C P+  ++  +I  +   G  + A
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 451 QNLENKM 457
           + L  +M
Sbjct: 240 KGLLAEM 246



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 63/135 (46%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           PT+VT+N ++        I    + F +M   G +P+ ITY ++++   K G       +
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L+++E      +   +N II +  +   V +  + F  M +    PD  T+++++  +  
Sbjct: 68  LKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCN 127

Query: 444 LGMTEAAQNLENKMI 458
           LG    A +L  +M+
Sbjct: 128 LGRVNEATSLFKQMV 142


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 167/357 (46%), Gaps = 16/357 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++K++  L +  + E+A LLF+ M S G+ P V  YT L+ ++ ++GL+++A S  ++M
Sbjct: 290 TYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEM 349

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +S+  C  +V TY+ L+ +  K  +      I   M   G   + +TY+ ++DG  KA +
Sbjct: 350 RSIG-CSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGE 408

Query: 236 FEEMESSFSAMVESG----------GCH-----PDIFTLNSMISAYGNSGNIEKMEKWYN 280
            ++    ++ ++ +           G H     P++ T  ++I     +  +   ++  +
Sbjct: 409 IQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLD 468

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
                G + +    + L   + + G  D  + V   M K  + PTV TY  +I+   K  
Sbjct: 469 AMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDR 528

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            ++   +   +M      PN +TY +++    + G   K   +L  +E      +   + 
Sbjct: 529 RLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYT 588

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I   G++G V+   +LF+ M  + C P+ +T+  +I    A G+ + A +L ++M
Sbjct: 589 ALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 645



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 158/335 (47%), Gaps = 21/335 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +   A  L + MLS+G +P+  +Y AL+  + + G +D A      M
Sbjct: 446 TYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRM 505

Query: 176 KSVSDCK--PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              S C   P V+TY+ LI +  K  R DL  K+L++M       + VTY  +IDG  + 
Sbjct: 506 ---SKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRI 562

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + ++     S M+E  GC P++ T  ++I   G SG ++   + + + +  G   +  T
Sbjct: 563 GECQKALKLLS-MMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVT 621

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEY 348
             +L      AG+ D+  S++  M++ ++   +  Y  V++ F K      G +E++E +
Sbjct: 622 YRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESH 681

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISA 405
                  G  P +  Y  L+  +SKAG +   +++   + ++ +S  I     +  +I A
Sbjct: 682 -------GTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQA 734

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
              A  +EK  EL+  +  +  VP+   F  +I+ 
Sbjct: 735 LCLASQLEKAFELYSEITRKGVVPELSVFVCLIKG 769



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 139/313 (44%), Gaps = 25/313 (7%)

Query: 102 GLLRQ-QQWYQ--------ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           GL+ Q + W+         A   T+T L+    K KQ  QAS +F  M+  G  P+   Y
Sbjct: 337 GLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITY 396

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSD---------------CKPDVYTYSILIKSCTK 197
           +ALV    ++G + +A      +   SD                 P+V TY  LI    K
Sbjct: 397 SALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCK 456

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            H+    +++L  M   G E + + Y+ +IDG+ K  K +  +  F  M + G   P + 
Sbjct: 457 AHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGY-LPTVH 515

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I A      ++   K  ++        ++ T   +     R G   K   ++  M
Sbjct: 516 TYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM 575

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
           +++   P VVTY  +I+  GK+G ++   + F +M  +G  PN +TY  L++    AGL+
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLL 635

Query: 378 MKVDSILRQVENS 390
            +  S+L +++ +
Sbjct: 636 DEAHSLLSEMKQT 648



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 151/349 (43%), Gaps = 17/349 (4%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           CK+   +  L  +   D  K    + T ++S   ++ L DEA S ++ M+  S C P+V 
Sbjct: 86  CKEGRWSDALVMIERED-FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS-CIPNVV 143

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y  A+ +         M
Sbjct: 144 TYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRM 203

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEK------MEKWYNEFNLMGVKADIQTLNILTKS 300
            + G C P     N  I +      +         EK Y E  ++     +  +N  T +
Sbjct: 204 ADCG-CPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEE--MLASSCVLNKVN--TAN 258

Query: 301 YGRA----GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           + R     G +D    ++  M  + F P   TY+ VI    +A  +EK    F++MK  G
Sbjct: 259 FARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVG 318

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+  TY  L+ ++ KAGLI +  S   ++ +     +   +  ++ AY +A  + +  
Sbjct: 319 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQAS 378

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           ++F  M +  C P+ IT++ ++      G  + A  +  K+I   +N G
Sbjct: 379 DIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVG 427



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 152/369 (41%), Gaps = 34/369 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K KQ      +  +M+ +G  P+  ++ +LV +Y  +     A+  +  M
Sbjct: 144 TYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRM 203

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF---DLI---EKILAEMSYLGIECSAVTYNT---- 225
                C P    Y+I I S          DL+   EK+  EM  L   C     NT    
Sbjct: 204 ADCG-CPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEM--LASSCVLNKVNTANFA 260

Query: 226 -IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
             + G GK     +M      ++   G  PD  T + +I+    +  +EK    + E   
Sbjct: 261 RCLCGMGKF----DMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKS 316

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           +GV  D+ T  IL  S+ +AG+ ++ RS  D M+       VVTY  ++  + KA  + +
Sbjct: 317 VGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQ 376

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------ 398
             + F +M   G  PN+ITY +LV    KAG I K   +  ++  +   + + F      
Sbjct: 377 ASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKH 436

Query: 399 ----------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
                     +  +I    +A  V    EL   M    C P++I +  +I  +  +G  +
Sbjct: 437 TDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKID 496

Query: 449 AAQNLENKM 457
            AQ +  +M
Sbjct: 497 NAQEVFLRM 505



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 10/168 (5%)

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           E+   G   S  TYN ++     A + +        M ESG C  D FT+     A    
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCM-DKFTVGCFAQALCKE 88

Query: 270 GNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G      +W +   ++     K D      +      A ++D+  S +  M+     P V
Sbjct: 89  G------RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNV 142

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
           VTY  ++  F K   +   +     M   G  PN   + SLV +Y  A
Sbjct: 143 VTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNA 190


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLS 142
           +D   K  +   A  +F  ++++  +      FT   +++G C       A  L + ML 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFP---DLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P V  Y AL++A+ + G   EA    ++M       P+  TYS +I    K +R D
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLD 377

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E +   M+  G   + +T+NT+IDGY  AK+ ++       M E+G    D  T N++
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG-LVADTTTYNTL 436

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK--- 319
           I  +   G++        E    G+  DI T + L       G       +   MQK   
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 320 --------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                       P V TYNI+I      G   + EE +++M HRG+ P++ITY S++   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T+I  +  +G    A ++  +MI+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 160/378 (42%), Gaps = 38/378 (10%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q RC   +FT L+     C +   A   F  +   GL P V  +  L+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLH 157

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA +  + M   + C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 158 GLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 218 CSAVTYNTIIDGYGKA----------KKFEEMESS------FSAMVES------------ 249
            + +TY TI+DG  K           +K EE+         +SA+++S            
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 250 -------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   G  PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ 
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFV 336

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G + +   + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLI 396

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T+ +L+  Y  A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 423 KERHCVPDNITFATMIQA 440
                 PD +T  T++  
Sbjct: 457 ISSGLCPDIVTCDTLLDG 474



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 13/320 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 252 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 300
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 421 TMKERHCVPDNITFATMIQA 440
            M      PD IT   M+  
Sbjct: 641 EMISSGVYPDTITIRNMLTG 660



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 243 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++ILIK      +         +++ LG+    VT+NT++ G     +  E  + F  M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 308 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 3/305 (0%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++  +I  +    K     S+F  + + G  HPD+ T N+++        + +
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLG-LHPDVVTFNTLLHGLCVEDRVSE 167

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 335 TFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 454 ENKMI 458
            ++M+
Sbjct: 348 YDEML 352


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 9/357 (2%)

Query: 121 MVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +++ G CK+    +  + + E+   DG  P    +  LV+   ++G +  A   I D+  
Sbjct: 264 VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE-IMDVML 322

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
                PDVYTY+ +I    K        + L +M       + VTYNT+I    K  + E
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E  +  + ++ S G  PD+ T NS+I     + N     + + E    G + D  T N+L
Sbjct: 383 E-ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
             S    G  D+  +++  M+      +V+TYN +I+ F KA  I + EE F +M+  G+
Sbjct: 442 IDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGV 501

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
             NS+TY +L+    K+  +     ++ Q+       D   +N +++ + + GD++K  +
Sbjct: 502 SRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAAD 561

Query: 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQ 470
           +   M    C PD +T+ T+I      G  E A    ++++ K IA+  ++   +IQ
Sbjct: 562 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQ 618



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 2/373 (0%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ + + AL     +  Q  +     TF  L+  L K    + A  + +VML +G  P V
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV 330

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y +++S   + G + EA   ++ M +  DC P+  TY+ LI +  K ++ +   ++  
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEFLDQMIT-RDCSPNTVTYNTLISTLCKENQVEEATELAR 389

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            ++  GI     T+N++I G    +        F  M  S GC PD FT N +I +  + 
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSK 448

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G +++      +  L G    + T N L   + +A    +   + D M+        VTY
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTY 508

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           N +I+   K+  +E   +   +M   G KP+  TY SL++ + + G I K   I++ + +
Sbjct: 509 NTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTS 568

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           +    D   +  +IS   +AG VE   +L  +++ +        +  +IQ       T  
Sbjct: 569 NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTE 628

Query: 450 AQNLENKMIAMKE 462
           A NL  +M+   E
Sbjct: 629 AINLFREMLEQNE 641



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 169/408 (41%), Gaps = 35/408 (8%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD    Q     AL++F L  ++  +      + ++++ LG+    +    + E M + G
Sbjct: 54  LDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSG 113

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            +     +  L+ +Y Q  L DE    ++ M      KPD + Y+ ++      +   L+
Sbjct: 114 CEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLV 173

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEM--------ESSFSAM--- 246
           E   A+MS  GI+    T+N +I    +A +        E+M        E +F+ +   
Sbjct: 174 EIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQG 233

Query: 247 -VESG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKA 289
            +E G               GC     ++N ++  +   G +E    +  E  N  G   
Sbjct: 234 YIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFP 293

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T N L     +AG       +MD M +  + P V TYN VI    K G +++  E+ 
Sbjct: 294 DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFL 353

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +M  R   PN++TY +L+S   K   + +   + R + +  ++ D   FN +I      
Sbjct: 354 DQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +     ELF  M+ + C PD  T+  +I +  + G  + A N+  +M
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 1/155 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K ++ E AS L + M+ +G KP    Y +L++ + + G + +A   +  M
Sbjct: 507 TYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAM 566

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S + C+PD+ TY  LI    K  R ++  K+L  +   GI  +   YN +I G  + +K
Sbjct: 567 TS-NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRK 625

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             E  + F  M+E     PD  +   +     N G
Sbjct: 626 TTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGG 660


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 54/385 (14%)

Query: 125 GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G CK    +    LF  M   G+ P++  Y  ++  +  SG    A   + +M  + +S 
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS- 320

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             P+V TY+ LI +  K  +F    ++  EM   GI  + +TYN++IDG+ K  + +  E
Sbjct: 321 --PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
             F  M  + GC PD+FT  ++I  Y  +  I+   +  +E    G+ A+  T N L   
Sbjct: 379 DMFYLMA-TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 301 YGRAG------------------------------------------MYDKM-RSVMDFM 317
           +   G                                          M+  M +S MD  
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 497

Query: 318 QKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
               F    P V+TYNI+I      G   + EE +++M HRG+ P++ITY S++    K 
Sbjct: 498 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
             + +   +   + +     +   FN +I+ Y +AG V+   ELF  M  R  V D I +
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
            T+I  +  +G    A ++  +MI+
Sbjct: 618 ITLIYGFRKVGNINGALDIFQEMIS 642



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTL 399

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM   G+  + VTYNT+I G+               M+ SG 
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 298
           C PDI T N+++    ++G ++   + +             + FN  GV+ D+ T NIL 
Sbjct: 460 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN--GVEPDVLTYNILI 516

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           PN +T+ +L++ Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 419 FLTMKERHCVPDNITFATMIQAY 441
           F  M      PD IT   M+  +
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGF 659



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 182/439 (41%), Gaps = 23/439 (5%)

Query: 30  AIKRSPGPIQELGIQKEAEKDLSKILRT-EFAIKNIEKKVSSKKYKNLWPKPVLEALD-- 86
           A K   G   E G + E+ K     LR+  + IK +E  +       L  +P+   +D  
Sbjct: 32  AEKSRDGESGEAGFRGESLK-----LRSGSYEIKGLEDAIDLFS-DMLRSRPLPSVIDFN 85

Query: 87  ----EAIKQKKWQLALKIFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVM 140
                 ++ ++  L + ++   ++ +  Q RC   +FT L+     C +   A   F  +
Sbjct: 86  KLMGAVVRMERPDLVISLY---QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKL 142

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              GL P V  +T L+        + EA    + +     C+PDV T++ L+    +  R
Sbjct: 143 TKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-----CRPDVLTFTTLMNGLCREGR 197

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                 +L  M   G++   +TY T +DG  K        +    M E     P++   +
Sbjct: 198 VVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYS 257

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++I      G        + E    G+  +I T N +   +  +G +   + ++  M +R
Sbjct: 258 AIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER 317

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P VVTYN +I  F K G   +  E + +M  RG+ PN+ITY S++  + K   +   
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 377

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + +   +       D   F  +I  Y  A  ++   EL   M  R  V + +T+ T+I  
Sbjct: 378 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 441 YNALGMTEAAQNLENKMIA 459
           +  +G   AA +L  +MI+
Sbjct: 438 FCLVGDLNAALDLSQQMIS 456



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 21/321 (6%)

Query: 69  SSKKYKNLWPKPVL-------EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLM 121
           +++ Y  + P+ ++         +D   KQ +   A  +F L+  +        TFT L+
Sbjct: 342 AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGC-SPDVFTFTTLI 400

Query: 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 181
                 K+ +    L   M   GL  +   Y  L+  +   G L+ A      M S   C
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 460

Query: 182 KPDVYTYSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGY 230
            PD+ T + L+   C      D +E           + A   + G+E   +TYN +I G 
Sbjct: 461 -PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
               KF E E  +  M   G   PD  T +SMI        +++  + +          +
Sbjct: 520 INEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T N L   Y +AG  D    +   M +R      + Y  +I  F K G+I    + F+
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 351 KMKHRGMKPNSITYCSLVSAY 371
           +M   G+ P++IT  ++++ +
Sbjct: 639 EMISSGVYPDTITIRNMLTGF 659



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 119/298 (39%), Gaps = 42/298 (14%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L++A    +DM   S   P V  ++ L+ +  +  R DL+  +  +M    I C   ++ 
Sbjct: 62  LEDAIDLFSDMLR-SRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFT 120

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I  +    K     S+F  + + G  HPD+ T  ++                     L
Sbjct: 121 ILIKCFCSCSKLPFALSTFGKLTKLG-LHPDVVTFTTL---------------------L 158

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+  D                  ++   +D   +    P V+T+  ++    + G + +
Sbjct: 159 HGLCLD-----------------HRVSEALDLFHQ-ICRPDVLTFTTLMNGLCREGRVVE 200

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCII 403
                 +M   G++P+ ITY + V    K G  +   ++LR++E  S +  +   ++ II
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
               + G       LF+ M+++   P+ +T+  MI  +   G   AAQ L  +M+  K
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 159/343 (46%), Gaps = 5/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L    +   A  L + ML  G +PSV  YT L+ A  +S    EA + +++M
Sbjct: 143 TYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEM 202

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P++ TY+++I    +  R D  ++IL  +S  G +   V+Y T++ G   A++
Sbjct: 203 RA-KGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARR 261

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           +++++  F+ MV+   C P+  T + ++  +   G +E+  +   + +  G   +    N
Sbjct: 262 WDDVKVLFAEMVDK-KCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCN 320

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  +  + G  D     ++ M      P  ++Y  V+    +AG  E  +E   +M  +
Sbjct: 321 IVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK 380

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN +T+ + +    + GLI +   ++  +      +    +N ++  +   G V+  
Sbjct: 381 NCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSA 440

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF  +    C P+ IT+ T++         +AA  L   MI
Sbjct: 441 LELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAGMI 480



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 143/327 (43%), Gaps = 5/327 (1%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A+ L E   S G  P V + T L+    + G   +A   +   ++ S    DV+ Y+ L
Sbjct: 57  EAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEA-SGAPVDVFAYNTL 115

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +    ++ R D   +++A M    +   A TY  II G     +  +  +    M++ G 
Sbjct: 116 VAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG- 171

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P + T   ++ A   S    +     +E    G   +I T N++     R G  D  +
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ +    F P +V+Y  V++    A   + ++  F +M  +   PN +T+  LV  +
Sbjct: 232 EILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFF 291

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G++ +   +L+Q+       +T   N +I+A  + G V+   +    M    C PD 
Sbjct: 292 CRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDT 351

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           I++ T+++     G  E A+ L  +M+
Sbjct: 352 ISYTTVLRGLCRAGRWEHAKELLPEMV 378



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 155/352 (44%), Gaps = 5/352 (1%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q+  Q    T+T L+  + K     +A  + + M + G  P++  Y  +++   + G +D
Sbjct: 169 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 228

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A   +N + S    +PD+ +Y+ ++K      R+D ++ + AEM       + VT++ +
Sbjct: 229 DAKEILNRLSSYGF-QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDML 287

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  + +    E        M +  GC P+    N +I+A    G ++    + N   + G
Sbjct: 288 VRFFCRGGMVERAIQVLQQMSQH-GCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 346

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              D  +   + +   RAG ++  + ++  M ++   P  VT+N  I    + G IE+  
Sbjct: 347 CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAI 406

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           +  + M   G     +TY +LV  +   G   +VDS L    N     +T  +  +++  
Sbjct: 407 KLIELMPEYGCSVGIVTYNALVHGFCVQG---RVDSALELFNNLPCEPNTITYTTLLTGL 463

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             A  ++   EL   M ++ C  + +TF  ++  +   G  E A  L N+M+
Sbjct: 464 CHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMM 515



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 124/300 (41%), Gaps = 19/300 (6%)

Query: 102 GLLRQQQWYQAR----------CQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R  +W  A+          C     TF   + +L +    EQA  L E+M   G   
Sbjct: 360 GLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSV 419

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  Y ALV  +   G +D A    N++     C+P+  TY+ L+       R D   ++
Sbjct: 420 GIVTYNALVHGFCVQGRVDSALELFNNLP----CEPNTITYTTLLTGLCHAERLDAAAEL 475

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           LA M       +AVT+N ++  + +    EE     + M+E G C P++ T N+++    
Sbjct: 476 LAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG-CTPNLITFNTLLDGIT 534

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              N E+  +  +     GV  D  T + +     R    ++   ++  +Q     P V 
Sbjct: 535 KDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVG 594

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            YN ++    K    ++  ++F  M   G  PN  TY  L+   +  GL+ +   +L ++
Sbjct: 595 MYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSEL 654



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/376 (18%), Positives = 161/376 (42%), Gaps = 34/376 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    +    E+A  + + M   G  P+  +   +++A  + G +D+A+  +N+M
Sbjct: 283 TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM 342

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +  C PD  +Y+ +++   +  R++  +++L EM       + VT+NT I    +   
Sbjct: 343 -GMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGL 401

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-----------L 284
            E+       M E G C   I T N+++  +   G ++   + +N              L
Sbjct: 402 IEQAIKLIELMPEYG-CSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLL 460

Query: 285 MGV---------------------KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            G+                       +  T N+L   + + G  ++   +++ M +    
Sbjct: 461 TGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCT 520

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P ++T+N +++   K  + E+  E    +  +G+  ++ITY S+V   S+     +   +
Sbjct: 521 PNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQM 580

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           L  V++  +      +N I+ A  +  + ++  + F  M    C+P+  T+  +I+    
Sbjct: 581 LHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAH 640

Query: 444 LGMTEAAQNLENKMIA 459
            G+ + A+ + +++ A
Sbjct: 641 EGLLKEARYVLSELYA 656



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 45/265 (16%)

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           D   +A +  E  SS        G  PD++    +I      G      +        G 
Sbjct: 53  DDLAEAARLVETSSS-------RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGA 105

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D+   N L   Y R G  D  R ++  M      P   TY  +I      G +     
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALA 162

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
               M  RG +P+ +TY  L+ A  K+    +  ++L ++       +   +N II+   
Sbjct: 163 LLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMC 222

Query: 408 QAGDVEKMGE-----------------------------------LFLTMKERHCVPDNI 432
           + G V+   E                                   LF  M ++ CVP+ +
Sbjct: 223 REGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEV 282

Query: 433 TFATMIQAYNALGMTEAAQNLENKM 457
           TF  +++ +   GM E A  +  +M
Sbjct: 283 TFDMLVRFFCRGGMVERAIQVLQQM 307


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 163/340 (47%), Gaps = 12/340 (3%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTAL 155
           A+KIF  +++    +    TF  L+   G   +P +A  L E+M+ DG +KP+   Y  L
Sbjct: 132 AMKIFRKMKECGC-KPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNIL 190

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           + A+     L+EA++ ++ M + S  +PD+ TY+ L ++  +    D  E+++ +M    
Sbjct: 191 IQAWCTKNELEEAWNVMHKMVN-SGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYN 249

Query: 216 --IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             ++ +  T   II GY K     E       M E G  HP+    NS+I  Y +  + +
Sbjct: 250 NKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELG-VHPNPVVFNSLIKGYLDITDTD 308

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
            +E+        G+K D+ T + +  ++  +G+ D    + D M K    P +  Y+I+ 
Sbjct: 309 GVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILA 368

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + + +AG  +K E     M   G++ N + + +++S +  AG   K+D  LR  E  + +
Sbjct: 369 KGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAG---KMDCALRLYEKMNEM 425

Query: 394 ---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
              L+   +  +I  YG+A    K  EL +TM+E    P+
Sbjct: 426 GTPLNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPE 465



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 179/380 (47%), Gaps = 16/380 (4%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           I++ K   A+ IF  L ++  ++    T+T L+  L + K+      L   +  +G+KP 
Sbjct: 54  IRKGKPHEAVTIFNSLTEEG-HKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPD 112

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
             ++ A+++A+  SG + EA      MK    CKP   T++ LIK      R     K+L
Sbjct: 113 SILFNAMINAFSDSGKVHEAMKIFRKMKECG-CKPTTSTFNTLIKGFGIVGRPHEAMKLL 171

Query: 209 AEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             M   G ++ +  TYN +I  +    + EE  +    MV SG   PDI T N++  A+ 
Sbjct: 172 EMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSG-MQPDIVTYNTLARAFA 230

Query: 268 NSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +G        I KM+++ N+     VK + +T  I+ + Y + G   +    +  M++ 
Sbjct: 231 QNGETDNAERLILKMQQYNNK-----VKPNERTCGIIIRGYCKEGNMTEALRFLYKMKEL 285

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P  V +N +I+ +      + +EE    M+  G+KP+ +TY ++++A+S +GL+   
Sbjct: 286 GVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNC 345

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           + I   +  +++  D   ++ +   Y +AG  +K   L  +M +     + + F T+I  
Sbjct: 346 EEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISG 405

Query: 441 YNALGMTEAAQNLENKMIAM 460
           + A G  + A  L  KM  M
Sbjct: 406 WCAAGKMDCALRLYEKMNEM 425



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 162/349 (46%), Gaps = 6/349 (1%)

Query: 114 CQTF---TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           CQT    TKLM  L +  +P +A  +F  +  +G KP++  YT LV+A  +    +   S
Sbjct: 40  CQTVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPS 99

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            ++ ++  +  KPD   ++ +I + +   +     KI  +M   G + +  T+NT+I G+
Sbjct: 100 LLSKVEE-NGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGF 158

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           G   +  E       M++ G   P+  T N +I A+     +E+     ++    G++ D
Sbjct: 159 GIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPD 218

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQK--RFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
           I T N L +++ + G  D    ++  MQ+      P   T  I+I  + K G++ +   +
Sbjct: 219 IVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRF 278

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             KMK  G+ PN + + SL+  Y        V+  L  +E   +  D   ++ I++A+  
Sbjct: 279 LYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSS 338

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +G ++   E+F  M +    PD   ++ + + Y   G  + A+ L N M
Sbjct: 339 SGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSM 387



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%)

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
           TV++   ++ T  + G   +    F  +   G KP  ITY +LV+A ++      + S+L
Sbjct: 42  TVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLL 101

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
            +VE + V  D+  FN +I+A+  +G V +  ++F  MKE  C P   TF T+I+ +  +
Sbjct: 102 SKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIV 161

Query: 445 GMTEAAQNLENKMI 458
           G    A  L   MI
Sbjct: 162 GRPHEAMKLLEMMI 175



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 13/237 (5%)

Query: 103 LLRQQQWY-QARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           +L+ QQ+  + +    T  +++ G CK+    E    L++ M   G+ P+  V+ +L+  
Sbjct: 242 ILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYK-MKELGVHPNPVVFNSLIKG 300

Query: 159 Y---GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           Y     +  ++EA + + +       KPDV TYS ++ + +     D  E+I  +M    
Sbjct: 301 YLDITDTDGVEEALTLMEEF----GIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAE 356

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           IE     Y+ +  GY +A + ++ E+  ++M + G    ++    ++IS +  +G ++  
Sbjct: 357 IEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYG-LQANVVIFTTIISGWCAAGKMDCA 415

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            + Y + N MG   +++T   L   YG A    K   ++  M++    P + T  +V
Sbjct: 416 LRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPEMSTIELV 472


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLS 142
           +D   K  +   A  +F  ++++  +      FT   +++G C       A  L + ML 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFP---DLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P V  Y AL++A+ + G   EA    ++M       P+  TYS +I    K +R D
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLD 377

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E +   M+  G   + +T+NT+IDGY  AK+ ++       M E+G    D  T N++
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG-LVADTTTYNTL 436

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK--- 319
           I  +   G++        E    G+  DI T + L       G       +   MQK   
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 320 --------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                       P V TYNI+I      G   + EE +++M HRG+ P++ITY S++   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T+I  +  +G    A ++  +MI+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 159/378 (42%), Gaps = 38/378 (10%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q RC   +F  L+     C +   A   F  +   GL P V  +T L+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLH 157

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA    + M   + C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 158 GLCVEDRVSEALDFFHQMFETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 218 CSAVTYNTIIDGYGKA----------KKFEEMESS------FSAMVES------------ 249
            + +TY TI+DG  K           +K EE+         +SA+++S            
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 250 -------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
                   G  PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ 
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFV 336

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G + +   + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLI 396

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           T+ +L+  Y  A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 423 KERHCVPDNITFATMIQA 440
                 PD +T  T++  
Sbjct: 457 ISSGLCPDIVTCDTLLDG 474



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 13/320 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 252 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 300
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 421 TMKERHCVPDNITFATMIQA 440
            M      PD IT   M+  
Sbjct: 641 EMISSGVYPDTITIRNMLTG 660



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 243 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 144/330 (43%), Gaps = 9/330 (2%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E    F  M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 308 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 3/305 (0%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++N +I  +    K     S+F  + + G  HPD+ T  +++        + +
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFTTLLHGLCVEDRVSE 167

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              ++++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 335 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 454 ENKMI 458
            ++M+
Sbjct: 348 YDEML 352


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M +     PD   Y  
Sbjct: 69  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHT-PDPSAYLG 127

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++ T+         +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 128 LMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 186

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 187 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 245

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 246 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 305

Query: 371 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 306 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 365

Query: 430 DNITFATMIQAYNALGMTEAAQ 451
           D  +   ++ AY   G+ + ++
Sbjct: 366 DERSLEGVLNAYCIAGVIDESK 387



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 44/307 (14%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            T   +MV  G+    E A  + + + ++G+ P+   YT LV A G + + +EA+   N 
Sbjct: 227 DTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNM 286

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M                    T+      IE                TYN + + + K  
Sbjct: 287 M--------------------TEIGSLPTIE----------------TYNALANAFAKGG 310

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
            F+E E+ FS M  +     D  + +++I AY     ++   K Y E        D ++L
Sbjct: 311 LFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 370

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK- 353
             +  +Y  AG+ D+ +   + +Q     P+++ Y +++  + +        +  ++MK 
Sbjct: 371 EGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKT 430

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQ 408
           +R    + +    +   Y        V+ +L    +E  D  L   FFN ++     +GQ
Sbjct: 431 NRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQ 488

Query: 409 AGDVEKM 415
            G   ++
Sbjct: 489 KGRAARV 495



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V+ D+ T N L  +     + D+   ++  M +    P   +Y  +++ F  AG++ ++ 
Sbjct: 48  VRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVA 107

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F +M   G  P+   Y  L+ A+++ G   +  ++LRQ++          +  ++  Y
Sbjct: 108 ELFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLY 167

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           G+ G  + + ELF  M+     PD  T+  + + +   G
Sbjct: 168 GRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGG 205



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 324 PTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHR---GMKPNSITYCSLVSAYSKAGL 376
           PT  TYN V+    +A       + +   F +M+H     ++P+  TY +L++A +   L
Sbjct: 8   PTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRAL 67

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             + + +LR +  + V+ DT  +  I+ A+  AG++ ++ ELF  M      PD   +  
Sbjct: 68  SDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLG 127

Query: 437 MIQAYNALGMTEAAQNLENKMIA 459
           +++A+  +G T  A  +  +M A
Sbjct: 128 LMEAHTRVGATAEAVAVLRQMQA 150


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLS 142
           +D   K  +   A  +F  ++++  +      FT   +++G C       A  L + ML 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFP---DLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
             + P V  Y AL++A+ + G   EA    ++M       P+  TYS +I    K +R D
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLD 377

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             E +   M+  G   + +T+NT+IDGY  AK+ ++       M E+G    D  T N++
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG-LVADTTTYNTL 436

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK--- 319
           I  +   G++        E    G+  DI T + L       G       +   MQK   
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 320 --------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                       P V TYNI+I      G   + EE +++M HRG+ P++ITY S++   
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T+I  +  +G    A ++  +MI+
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 158/352 (44%), Gaps = 10/352 (2%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           K   AL  FG + +   +     TF  L+  L    +  +A  LF  M     +P+V  +
Sbjct: 129 KLPFALSTFGKITKLGLH-PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTF 187

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKIL 208
           T L++   + G + EA + ++ M      +P   TY  ++    K        DL+ K +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKIGDTVSALDLLRK-M 245

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            E+S+  I  + V Y+ IID   K  +  + ++ F+ M E G   PD+FT NSMI  + +
Sbjct: 246 EEISH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG-IFPDLFTYNSMIVGFCS 302

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           SG     E+   E     +  D+ T N L  ++ + G + +   + D M  R   P  +T
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           Y+ +I+ F K   ++  E  F  M  +G  PN IT+ +L+  Y  A  I     +L ++ 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            + ++ DT  +N +I  +   GD+    +L   M      PD +T  T++  
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 13/320 (4%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 252 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 300
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 421 TMKERHCVPDNITFATMIQA 440
            M      PD IT   M+  
Sbjct: 641 EMISSGVYPDTITIRNMLTG 660



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 243 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           ++ILIK      +         +++ LG+    VT+NT++ G     +  E  + F  M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIG-- 233

Query: 308 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
               S +D ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 145/360 (40%), Gaps = 38/360 (10%)

Query: 100 IFGLLRQQQWYQARCQ--TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157
           +  L ++ +  Q RC   +FT L+     C +   A   F  +   GL P V  +  L+ 
Sbjct: 98  VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLH 157

Query: 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 217
                  + EA +  + M   + C+P+V T++ L+    +  R      +L  M   G++
Sbjct: 158 GLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277
            + +TY TI+DG  K             M E     P++   +++I +    G     + 
Sbjct: 217 PTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 278 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337
            + E                                   MQ++  FP + TYN +I  F 
Sbjct: 277 LFTE-----------------------------------MQEKGIFPDLFTYNSMIVGFC 301

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
            +G     E+  ++M  R + P+ +TY +L++A+ K G   + + +  ++    +I +T 
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ++ +I  + +   ++    +F  M  + C P+ ITF T+I  Y      +    L ++M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 3/305 (0%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
            I C   ++  +I  +    K     S+F  + + G  HPD+ T N+++        + +
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFNTLLHGLCVEDRVSE 167

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 335 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
              K G      +  +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 454 ENKMI 458
            ++M+
Sbjct: 348 YDEML 352


>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Cucumis sativus]
          Length = 708

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 151/299 (50%), Gaps = 1/299 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           QA +L   M   G+  +V +Y  ++ A+ +S  ++EA     +MKS    KP   +++IL
Sbjct: 347 QALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKS-KGVKPTSASFNIL 405

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           + + ++  + +++EK+L EM  +G+E +  +Y  +I  YG+ KK  +M +     ++  G
Sbjct: 406 MNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNG 465

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P   +  ++I AY  SG  EK    +      G+K  I+T   L  ++ RAG    + 
Sbjct: 466 IRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLM 525

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +   M +     T VT+N +++ F K GH  +  +   +    G++P  +TY  L++AY
Sbjct: 526 KIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAY 585

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           ++ G  +K+  +L+++   D+  D+  ++ +I A+ +  D ++       M +   VPD
Sbjct: 586 ARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPD 644



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 199/479 (41%), Gaps = 87/479 (18%)

Query: 36  GPIQEL-GIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKW 94
           GP+ E+ GI +    +LS+ +    A+   E ++S K+    W   VL  L E   +   
Sbjct: 156 GPVGEIVGIAR----NLSQNMTLGEALGEFEGRISEKE---CWE--VLRLLGE---ENLV 203

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
              L  F  +  Q+      + ++ L  +LG+    E+  +LF+ +        V VY +
Sbjct: 204 VCCLYFFEWMGLQETSLVTSRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNS 263

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-----FDLIEK--- 206
            +S        D+A      M++ ++  PD  T SI+I    K  R     +D  EK   
Sbjct: 264 AISGLMVCKRYDDACKVYEAMET-NNVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNQ 322

Query: 207 ----------------------------ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
                                       +  EM   G+  + + YNTI+D + K+ + EE
Sbjct: 323 KGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEE 382

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            E  F+ M +S G  P   + N +++AY      E +EK   E   MG++ ++++   L 
Sbjct: 383 AEGVFAEM-KSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLI 441

Query: 299 KSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            +YGR   M D        M+K    PT  +Y  +I  +  +G  EK    F+ M   G+
Sbjct: 442 SAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGL 501

Query: 358 KPNSITYCSLVSAYSKAG---LIMKVDSIL-----------------------RQVENSD 391
           KP+  TY +L+ A+ +AG    +MK+  ++                         VE  D
Sbjct: 502 KPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEARD 561

Query: 392 VILD---------TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           VI +            +N +++AY + G   K+ +L   M  R   PD++T++TMI A+
Sbjct: 562 VISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAF 620



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW--YN 280
           YN+ I G    K++++    + AM E+   +PD  T + MI+     G   K + W  + 
Sbjct: 261 YNSAISGLMVCKRYDDACKVYEAM-ETNNVNPDHVTCSIMITVMRKIGRSAK-DSWDYFE 318

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           + N  GVK   + L  L KS+   G+  +   +   M+K+     V+ YN +++ F K+ 
Sbjct: 319 KMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSN 378

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            IE+ E  F +MK +G+KP S ++  L++AYS+      V+ +L ++++  +  +   + 
Sbjct: 379 QIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYT 438

Query: 401 CIISAYGQAGDVEKM-GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
           C+ISAYG+   +  M  + FL MK+    P + ++  +I AY+  G  E A
Sbjct: 439 CLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKA 489



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 11/259 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG-QSGLLDEAFSTIND 174
           +F  LM    +  QPE    L   M   GL+P+V  YT L+SAYG Q  + D A      
Sbjct: 401 SFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLR 460

Query: 175 MKSVSDCKPDVYTYSILIK--SCTKFHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
           MK  +  +P  ++Y+ LI   S + +H   +   E +L E    G++ S  TY T++D +
Sbjct: 461 MKK-NGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLRE----GLKPSIETYTTLLDAF 515

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +A     +   +  M+        + T N+++  +   G+  +     +EF+ +G++  
Sbjct: 516 RRAGDTVSLMKIWKLMIREKVLGTRV-TFNTLLDGFAKHGHYVEARDVISEFDKIGLQPT 574

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T N+L  +Y R G + K+  ++  M  R   P  VTY+ +I  F +    ++   Y K
Sbjct: 575 VMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHK 634

Query: 351 KMKHRGMKPNSITYCSLVS 369
           KM   G  P+  +Y  L S
Sbjct: 635 KMVKSGQVPDVKSYQKLKS 653



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 4/197 (2%)

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
           G +G  EK+   +    L     D+   N           YD    V + M+     P  
Sbjct: 234 GRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAMETNNVNPDH 293

Query: 327 VTYNIVIETFGKAGHIEKME-EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VT +I+I    K G   K   +YF+KM  +G+K +S    +L+ ++   GL  +   +  
Sbjct: 294 VTCSIMITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQL 353

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++E   V  +   +N I+ A+ ++  +E+   +F  MK +   P + +F  ++ AY+   
Sbjct: 354 EMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRM 413

Query: 446 MTEAAQNLENKMIAMKE 462
             E  + L   ++ MK+
Sbjct: 414 QPEIVEKL---LVEMKD 427


>gi|297802950|ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315195|gb|EFH45618.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 906

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 11/328 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +  ++G+  + E+   L+  + S G+      ++ +V  Y ++G L+EA S +  M
Sbjct: 565 TMIDIYTVMGEFGEAEK---LYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIM 621

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
               D  PDVY +  +++   K    D ++ +   +   GI      YN +I+   +A  
Sbjct: 622 DEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQEMYNCVINCCARALP 681

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQ 292
            +E+  +F  M+  G   P+  T N ++  YG +    K+ K  NE  L+  +    D+ 
Sbjct: 682 LDELSRTFEEMIRYGFT-PNTVTFNVLLDVYGKA----KLFKKVNELFLLAKRHGVVDVI 736

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           + N +  +YG+   +  M S +  MQ   F  ++  YN +++ +GK   +EK     K+M
Sbjct: 737 SYNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRM 796

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           K     P+  TY  +++ Y + G I +V  +L++++ S +  D   +N +I AYG  G V
Sbjct: 797 KKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMV 856

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQA 440
           E+   L   M+ ++  PD +T+  ++ A
Sbjct: 857 EEAVGLVKEMRGKNITPDKVTYTNLVTA 884



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 177/400 (44%), Gaps = 41/400 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++++W  A  +   L   Q +Q   Q F  ++    K    + AS  F++ML  G++P+V
Sbjct: 188 RREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYACTKKGNVKLASKWFQMMLELGVRPNV 247

Query: 150 ----------------------------------DVYTALVSAYGQSGLLDEAFSTINDM 175
                                               Y+++++ Y +  L ++A   IN M
Sbjct: 248 ATIGMLMGLYQKNWNVDEAEFAFSHMRKFEIVCESAYSSMITIYTRLRLYEKAEEVINLM 307

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K     +  +  + +++ + ++  + +  E +L  M   G   + + YNT+I GYGK  K
Sbjct: 308 KQ-DRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSK 366

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E  +S F  + + G   PD  +  SMI  +G + N E+   +Y E    G K +   L 
Sbjct: 367 MEAAKSLFHRLSDIG-LEPDETSYRSMIEGWGRADNYEEANHYYQELKRCGYKPNSSNLF 425

Query: 296 ILTKSYGRAGMYD-KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            L     + G  D  ++++ D       +P+++   I+++ + K G I+ +    K   H
Sbjct: 426 TLINLQAKYGDRDGAIKTIEDMTSIGCQYPSIL--GIILQAYEKVGKIDVVPYLLKGSFH 483

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++ N  ++  LV AY K G++    ++LR+ +  D   ++  ++ +I +  ++G +  
Sbjct: 484 NHIRLNQTSFSILVMAYIKHGMVDDCLALLREKKWRDSAFESHLYHLLICSCKESGQLTD 543

Query: 415 MGELF-LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
             +L+  TM+    +  +IT +TMI  Y  +G    A+ L
Sbjct: 544 AVKLYNHTMESDEEINLHIT-STMIDIYTVMGEFGEAEKL 582



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 3/285 (1%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS 148
           +K    + A  +  ++ +Q+        F  ++ +  KC   ++   L+  +   G+   
Sbjct: 606 VKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWD 665

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
            ++Y  +++   ++  LDE   T  +M       P+  T+++L+    K   F  + ++ 
Sbjct: 666 QEMYNCVINCCARALPLDELSRTFEEMIRYG-FTPNTVTFNVLLDVYGKAKLFKKVNELF 724

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
                 G+    ++YNTII  YGK K F  M S+   M +  G    +   N+++ AYG 
Sbjct: 725 LLAKRHGV-VDVISYNTIIAAYGKNKDFTNMSSAIKNM-QFDGFSVSLEAYNTLLDAYGK 782

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
              +EK               D  T NI+   YG  G  D++  V+  +++    P + +
Sbjct: 783 DKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCS 842

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           YN +I+ +G  G +E+     K+M+ + + P+ +TY +LV+A  K
Sbjct: 843 YNTLIKAYGIGGMVEEAVGLVKEMRGKNITPDKVTYTNLVTALRK 887



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTY 188
           ++ S  FE M+  G  P+   +  L+  YG++ L    F  +N++  ++      DV +Y
Sbjct: 683 DELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKL----FKKVNELFLLAKRHGVVDVISY 738

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + +I +  K   F  +   +  M + G   S   YNT++D YGK K+ E+  S    M +
Sbjct: 739 NTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK 798

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S    PD +T N MI+ YG  G I+++     E    G+  D+ + N L K+YG  GM +
Sbjct: 799 STS-GPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 857

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
           +   ++  M+ +   P  VTY  ++    K     +  ++   MK  G+
Sbjct: 858 EAVGLVKEMRGKNITPDKVTYTNLVTALRKNDEFLEAIKWSLWMKQMGI 906



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 133/311 (42%), Gaps = 4/311 (1%)

Query: 136 LFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            F+ M   G L+ +   Y+ ++   G+    + A   I ++      +     ++ +I +
Sbjct: 162 FFDWMRCKGKLEGNFGAYSLILRVLGRREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYA 221

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
           CTK     L  K    M  LG+  +  T   ++  Y K    +E E +FS M +      
Sbjct: 222 CTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAEFAFSHMRKFEIVCE 281

Query: 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
             ++  SMI+ Y      EK E+  N      V+  ++   ++  +Y + G  ++  SV+
Sbjct: 282 SAYS--SMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVL 339

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             M+   F P ++ YN +I  +GK   +E  +  F ++   G++P+  +Y S++  + +A
Sbjct: 340 ISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRA 399

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
               + +   ++++      ++     +I+   + GD +   +    M    C   +I  
Sbjct: 400 DNYEEANHYYQELKRCGYKPNSSNLFTLINLQAKYGDRDGAIKTIEDMTSIGCQYPSI-L 458

Query: 435 ATMIQAYNALG 445
             ++QAY  +G
Sbjct: 459 GIILQAYEKVG 469



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 103/242 (42%), Gaps = 36/242 (14%)

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +E +   Y+ I+   G+ +++   E     +    G        N++I A    GN++  
Sbjct: 172 LEGNFGAYSLILRVLGRREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYACTKKGNVKLA 231

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            KW+     +GV+ ++ T+ +L       G+Y K  +V    +  F F  +  + IV E+
Sbjct: 232 SKWFQMMLELGVRPNVATIGMLM------GLYQKNWNVD---EAEFAFSHMRKFEIVCES 282

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
                                       Y S+++ Y++  L  K + ++  ++   V L 
Sbjct: 283 ---------------------------AYSSMITIYTRLRLYEKAEEVINLMKQDRVRLK 315

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              +  +++AY Q G +E+   + ++M+     P+ I + T+I  Y  +   EAA++L +
Sbjct: 316 LENWLVMLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFH 375

Query: 456 KM 457
           ++
Sbjct: 376 RL 377


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 2/309 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           QA  L + M   G KP V  Y  L++   + G LDEA   +N+M  +  C+P+V T++I+
Sbjct: 262 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PLYGCQPNVITHNII 320

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           ++S     R+   E++LA+M   G   S VT+N +I+   + +           M + G 
Sbjct: 321 LRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG- 379

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P+  + N ++  +     +++  ++       G   DI T N L  +  + G  D   
Sbjct: 380 CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAV 439

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ +  +   P ++TYN VI+   K G  E   E  ++M+ +G+KP+ ITY +L+   
Sbjct: 440 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
              G + +   I   +E   +      +N I+    +A    +  +    M E+ C P  
Sbjct: 500 GCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTK 559

Query: 432 ITFATMIQA 440
            T+  +I+ 
Sbjct: 560 ATYTILIEG 568



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 25/350 (7%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           T L+    +  +  +A+ + E++ + G  P V  Y  L+  Y +SG +D+A   +  M S
Sbjct: 146 TSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM-S 204

Query: 178 VSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIID------ 228
           V+   PDV TY+ +++S C      + +E +  +M     EC    +TY  +I+      
Sbjct: 205 VA---PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQR---ECYPDVITYTILIEATCNDS 258

Query: 229 GYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
           G G+A K  +EM           GC PD+ T N +I+     G +++  K+ N   L G 
Sbjct: 259 GVGQAMKLLDEMRKK--------GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGC 310

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           + ++ T NI+ +S    G +     ++  M ++   P+VVT+NI+I    +   + +  +
Sbjct: 311 QPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAID 370

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             +KM   G  PNS++Y  L+  + +   + +    L  + +     D   +N +++A  
Sbjct: 371 VLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC 430

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + G  +   E+   +  + C P  IT+ T+I     +G TE A  L  +M
Sbjct: 431 KDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEM 480



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 136/328 (41%), Gaps = 32/328 (9%)

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G L+E    +  M    D  PDV   + LI+   +  +     +I+  +   G     
Sbjct: 119 RNGELEEGLKFLERMIYQGDI-PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDV 177

Query: 221 VTYNTIIDGYGKAKKFEEM----------------ESSFSAMVESGG------------- 251
           +TYN +I GY K+ + ++                  +   ++ +SG              
Sbjct: 178 ITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQ 237

Query: 252 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309
             C+PD+ T   +I A  N   + +  K  +E    G K D+ T N+L     + G  D+
Sbjct: 238 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 297

Query: 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369
               ++ M      P V+T+NI++ +    G     E     M  +G  P+ +T+  L++
Sbjct: 298 AIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILIN 357

Query: 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
              +  L+ +   +L ++     + ++  +N ++  + Q   +++  E    M  R C P
Sbjct: 358 FLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 417

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKM 457
           D +T+ T++ A    G  +AA  + N++
Sbjct: 418 DIVTYNTLLTALCKDGKADAAVEILNQL 445



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 111/267 (41%), Gaps = 26/267 (9%)

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS--FSAMVESG---------------G 251
            +++ +G+E S+       +G   ++ FEE  S+     +V +G               G
Sbjct: 84  GDLNGIGMESSSP------NGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQG 137

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             PD+    S+I  +  SG   K  +        G   D+ T N+L   Y ++G  DK  
Sbjct: 138 DIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKAL 197

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            V++ M      P VVTYN ++ +   +G +++  E   +   R   P+ ITY  L+ A 
Sbjct: 198 QVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEAT 254

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
                + +   +L ++       D   +N +I+   + G +++  +    M    C P+ 
Sbjct: 255 CNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNV 314

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMI 458
           IT   ++++  + G    A+ L   M+
Sbjct: 315 ITHNIILRSMCSTGRWMDAERLLADML 341



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 4/174 (2%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           + + AI+ +E  VS   Y ++     L  L    K  K   A++I   L  +        
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTL--LTALCKDGKADAAVEILNQLSSKGCSPVLI- 455

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K  + E A+ L E M   GLKP +  Y+ L+   G  G +DEA    +DM
Sbjct: 456 TYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDM 515

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
           + +S  KP   TY+ ++    K  +       LA M   G + +  TY  +I+G
Sbjct: 516 EGLS-IKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 158/356 (44%), Gaps = 19/356 (5%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L K  +   A  LF+ +L  G+ PS   YT+L+     +   D+A     DM
Sbjct: 325 SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 384

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
                C P   TY+++I +  K        DLI+K++ +    G     VTYNT++DG  
Sbjct: 385 NR-RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED----GHVPDVVTYNTVMDGLC 439

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE------KMEKWYNEFNLM 285
           K+ + EE    F+ M E  GC P+  + N++I        I+      K+++ +     M
Sbjct: 440 KSSRVEEALLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRM 498

Query: 286 ---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G   D+ T + L          D  R +++ M KR   PTVVT N +I    KAG I
Sbjct: 499 TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 558

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
           ++  E    M   G  P+ +TY +LV  + +AG   +   +L  +    +  +   +  +
Sbjct: 559 KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTAL 618

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +S   +A  + +   +F  MK   C P+  T+  +I  + + G  +    L  +M+
Sbjct: 619 VSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 674



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 160/373 (42%), Gaps = 27/373 (7%)

Query: 89  IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLM-------------VMLGKCKQP--EQA 133
           +    W   + I GL +  +   AR   F KL+             ++ G C     + A
Sbjct: 319 VSPDSWSYGILIDGLAKAGKLNDAR-NLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDA 377

Query: 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-PDVYTYSILI 192
             LF  M   G  PS   Y  ++ A  + G+L+EA   I  M  + D   PDV TY+ ++
Sbjct: 378 RELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKM--IEDGHVPDVVTYNTVM 435

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------MESSFSAM 246
               K  R +    +  EM  LG   +  ++NTII G  +  K ++      ++ +F  +
Sbjct: 436 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLL 495

Query: 247 --VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             +   G  PD+ T +++IS   +   ++       +      K  + T N L     +A
Sbjct: 496 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 555

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G   + R V+D M      P VVTYN ++    +AG  E+  E    M  RG+ PN +TY
Sbjct: 556 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 615

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +LVS   KA  + +   +  Q+++S    +   +  +I  +  AG V+   +LF  M  
Sbjct: 616 TALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC 675

Query: 425 RHCVPDNITFATM 437
               PD++ + T+
Sbjct: 676 AGISPDHVVYGTL 688



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 11/284 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS---------GLLD 166
           T+  +M  L K  + E+A LLF  M   G  P+   +  ++    Q          G LD
Sbjct: 430 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLD 489

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           EAF  +  M       PDV TYS LI       R D    +L +M     + + VT NT+
Sbjct: 490 EAFRLLKRMTDDGHV-PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTL 548

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I G  KA + +E      AMV SG   PD+ T N+++  +  +G  E+  +  ++    G
Sbjct: 549 IHGLCKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 607

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +  ++ T   L     +A    +   V   M+     P + TY  +I  F  AG ++   
Sbjct: 608 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGL 667

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           + F +M   G+ P+ + Y +L +   K+G   +   ILR+   S
Sbjct: 668 KLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 711



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 121 MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           +V+LG C+    ++A  +FE M    + P    Y  L+    ++G L++A +    +   
Sbjct: 293 IVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLH- 351

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           S   P    Y+ LI      + FD   ++ A+M+  G   S VTYN +ID   K    EE
Sbjct: 352 SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 411

Query: 239 MESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
                  M+E G  H PD+ T N+++     S  +E+    +NE   +G   + ++ N +
Sbjct: 412 ACDLIKKMIEDG--HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 469

Query: 298 T---------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
                         + G  D+   ++  M      P VVTY+ +I        ++     
Sbjct: 470 ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 529

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            + M  R  KP  +T  +L+    KAG I +   +L  + +S                GQ
Sbjct: 530 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS----------------GQ 573

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +                   PD +T+ T++  +   G TE A+ L + M+A
Sbjct: 574 S-------------------PDVVTYNTLVHGHCRAGQTERARELLSDMVA 605



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 170/409 (41%), Gaps = 64/409 (15%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+KIF L+  ++ +      +  L+  L K ++ E    + +VM+  G  P    +T ++
Sbjct: 29  AVKIFSLM--EECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTIL 86

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLG 215
               ++G +DEA   +++M+S     P   T S L    C +      +E+    +  + 
Sbjct: 87  CGLCKAGKMDEAELVMDEMRSRM-IPPYFATSSFLAHELCLRGS----MERAFQLLEIMP 141

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE-----SGGCHPDIFTLNSMISAYGNSG 270
           +  S+  YN ++    KA + ++       M E     + G      +L+S++    +SG
Sbjct: 142 VANSS-AYNIVVVALCKAARVDDALELARTMSEKRIPLAAG------SLDSVLVGLMDSG 194

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            I++  + Y E      +  + TLN+L + +   G  DK R ++  M      P  V+Y 
Sbjct: 195 RIDEALQVYRENRR---EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYC 251

Query: 331 IVIETFGKAGHIE--------------------------------------KMEE---YF 349
            V++   KAG +E                                      +++E    F
Sbjct: 252 TVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMF 311

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           +KM  R + P+S +Y  L+   +KAG +    ++ +++ +S V   T  +  +I     A
Sbjct: 312 EKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 371

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              +   ELF  M  R C P  +T+  MI A    GM E A +L  KMI
Sbjct: 372 NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI 420



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 137/307 (44%), Gaps = 9/307 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D+A ++ K   A ++   +     +     T++ L+  L    + + A  L E M+   
Sbjct: 479 IDQACQRGKLDEAFRLLKRM-TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 537

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
            KP+V     L+    ++G + EA   ++ M S S   PDV TY+ L+    +  + +  
Sbjct: 538 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQSPDVVTYNTLVHGHCRAGQTERA 596

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
            ++L++M   G+  + VTY  ++ G  KA +  E    F+ M +S GC P++FT  ++I 
Sbjct: 597 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTALIL 655

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK----MRSVMDFMQKR 320
            + ++G ++   K + E    G+  D      L     ++G   +    +R   + ++  
Sbjct: 656 GFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSE 715

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
            +   V  Y   ++   +AG +E    + + M   G  P      SLV+   K+G   + 
Sbjct: 716 AWGDEV--YRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEA 773

Query: 381 DSILRQV 387
            ++L ++
Sbjct: 774 RAVLEEI 780



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 19/329 (5%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P +     L+  +   G +D+A   +  M    +C PD  +Y  ++    K  R +   
Sbjct: 209 EPCLVTLNVLLEGFCSRGQVDKARELLRAMPD-EECAPDEVSYCTVLDGLCKAGRVEEAV 267

Query: 206 KILAEMSYLGIECSAVT------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           ++  +        S+ +      YN +I G  +  + +E    F  M E     PD ++ 
Sbjct: 268 RLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERN-VSPDSWSY 326

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             +I     +G +      + +    GV         L      A  +D  R +   M +
Sbjct: 327 GILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR 386

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R   P+ VTYN++I+   K G +E+  +  KKM   G  P+ +TY +++    K+  + +
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446

Query: 380 VDSILRQVENSDVILDTPFFNCII------SAYGQAGDVEKMGELFLTMK----ERHCVP 429
              +  ++E      +    N II      S   QA    K+ E F  +K    + H VP
Sbjct: 447 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH-VP 505

Query: 430 DNITFATMIQAYNALGMTEAAQNLENKMI 458
           D +T++T+I    ++   + A++L   M+
Sbjct: 506 DVVTYSTLISGLCSIARVDDARHLLEDMV 534



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 151/365 (41%), Gaps = 61/365 (16%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G+ P+  ++T+++  +   G   EA    + M+      PDVY  ++LI S +K  
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVY--NVLIDSLSKRQ 58

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE----MESSFSAMVESGGCHPD 255
             + ++K++  M   G    + T+ TI+ G  KA K +E    M+   S M+      P 
Sbjct: 59  ETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMI------PP 112

Query: 256 IFTLNSMIS-AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314
            F  +S ++      G+   ME+ +    +M V A+    NI+  +  +A   D    + 
Sbjct: 113 YFATSSFLAHELCLRGS---MERAFQLLEIMPV-ANSSAYNIVVVALCKAARVDDALELA 168

Query: 315 DFM-QKRFFF-------------------------------PTVVTYNIVIETFGKAGHI 342
             M +KR                                  P +VT N+++E F   G +
Sbjct: 169 RTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQV 228

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---- 398
           +K  E  + M      P+ ++YC+++    KAG   +V+  +R   + ++   +      
Sbjct: 229 DKARELLRAMPDEECAPDEVSYCTVLDGLCKAG---RVEEAVRLFGDRELPSSSSSSSSP 285

Query: 399 -----FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
                +N +I    Q   +++  ++F  M ER+  PD+ ++  +I      G    A+NL
Sbjct: 286 PSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNL 345

Query: 454 ENKMI 458
             K++
Sbjct: 346 FQKLL 350



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 118/282 (41%), Gaps = 9/282 (3%)

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           SG +DEA     + +     +P + T ++L++      + D   ++L  M         V
Sbjct: 193 SGRIDEALQVYRENRR----EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEV 248

Query: 222 TYNTIIDGYGKAKKFEEM-----ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
           +Y T++DG  KA + EE      +    +   S    P +   N +I     +  I++  
Sbjct: 249 SYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAV 308

Query: 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
           + + + N   V  D  +  IL     +AG  +  R++   +      P+ V Y  +I   
Sbjct: 309 QMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGL 368

Query: 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396
             A   +   E F  M  RG  P+ +TY  ++ A  K G++ +   +++++     + D 
Sbjct: 369 CMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDV 428

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
             +N ++    ++  VE+   LF  M+   C P+  +  T+I
Sbjct: 429 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 470


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 34/369 (9%)

Query: 104 LRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163
           LRQ   Y AR  +  K+   L  C+  E+                 DV + ++   G   
Sbjct: 101 LRQHS-YDARYASLVKIAESLDSCEATEE-----------------DV-SQVLRCLGDKI 141

Query: 164 LLDEAFSTINDMKSVSDC-----------KP--DVYTYSILIKSCTKFHRFDLIEKILAE 210
           L  +A   +N+M +               KP  +V  Y++ +K   K    D  EK+  E
Sbjct: 142 LEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDXAEKLFDE 201

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   G++   +T++TII     +    +    F  M E G CHPD  T ++MI AYG +G
Sbjct: 202 MLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFG-CHPDDVTYSAMIDAYGRAG 260

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           N++   K Y+       + D  T + L + YG +G +D   +V + M+     P +V YN
Sbjct: 261 NVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYN 320

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +++  G+A    + +  +K+M + G++ +  TY +L+ AY +A        + ++++  
Sbjct: 321 TLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEK 380

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEA 449
            + L    +N +++     G  E+   +F  MK   +C+PD+ TF+++I  Y+  G    
Sbjct: 381 GLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSE 440

Query: 450 AQNLENKMI 458
           A+ + N M+
Sbjct: 441 AEAMLNAML 449



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 166/375 (44%), Gaps = 8/375 (2%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           + AL  FG  R++         +   + +  KC+  + A  LF+ ML  G+KP    ++ 
Sbjct: 157 ETALLAFGFFRKRLKPSREVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFST 216

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++S    S L ++A      M     C PD  TYS +I +  +    D+  K+       
Sbjct: 217 IISCARVSSLPNKAVEWFEKMPEFG-CHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTE 275

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
                 VT++T+I  YG +  F+   + +  M ++ G  P++   N+++ A G +    +
Sbjct: 276 KWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEM-KALGVKPNLVIYNTLLDAMGRAKRPWQ 334

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            +  Y E    G++    T   L ++YGRA   +    V   M+++    +VV YN ++ 
Sbjct: 335 AKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLA 394

Query: 335 TFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
                G+ E+    F+ MK  G   P+S T+ SL++ YS +G + + +++L  +  +   
Sbjct: 395 MCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFE 454

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +      +I  YG+A   +++   F  + E    PD+     M+       MT++ +  
Sbjct: 455 PNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNV-----MTQSPKEE 509

Query: 454 ENKMIAMKENSGKKL 468
             K+I   + +  KL
Sbjct: 510 LGKLIDCIDKANPKL 524


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 133/277 (48%), Gaps = 1/277 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV++++++IK   K        +++  M   G     VT+N +++G  +AK+  +    
Sbjct: 232 PDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREV 291

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              +   G C P++ T  S+IS Y  +G +E     YN+   +G   ++ T N+L   YG
Sbjct: 292 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYG 351

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +AG      +V   M  R   P VVT++ +I+ + + G ++   + + +M    ++PN+ 
Sbjct: 352 KAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAH 411

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           T+C ++  + K     +    L+++   +D+      +N +I    + G V++   + + 
Sbjct: 412 TFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIE 471

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           M+E+ C PD  T+  +I  +   G    A    +KM+
Sbjct: 472 MEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMV 508



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 1/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
            + PS   Y  ++S   QSG   +A    + M   S   P+    S L  SC      D 
Sbjct: 122 AMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDA 181

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              +L++ S  G    A  YN ++D +    + ++  + F   ++ G   PD+++ N +I
Sbjct: 182 AAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVI 241

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FF 322
                 G+++K  +     +  G   D  T NIL     RA    K R V+  +Q+    
Sbjct: 242 KGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVC 301

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVTY  VI  + KAG +E     +  M   G  PN +TY  L++ Y KAG +    +
Sbjct: 302 MPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVA 361

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           + +Q+     + D   F+ +I  Y + G ++   +++  M + H  P+  TF  +I  + 
Sbjct: 362 VYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFC 421

Query: 443 ALGMTEAAQNLENKM 457
               +  A +   KM
Sbjct: 422 KQNRSGEALHFLKKM 436



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 7/335 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTIND 174
            + KLM +     + + A  LFE  +  G+  P V  +  ++    + G + +A   +  
Sbjct: 200 AYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVER 259

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGK 232
           M     C PD  T++IL+    +        ++L  +   G+ C  + VTY ++I GY K
Sbjct: 260 MDEFG-CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGV-CMPNVVTYTSVISGYCK 317

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           A + E+  + ++ MV  G   P++ T N +I+ YG +GN+      Y +  L     D+ 
Sbjct: 318 AGRMEDAMAVYNDMVAVGT-SPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVV 376

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T + L   Y R G  D    +   M +    P   T+ I+I TF K     +   + KKM
Sbjct: 377 TFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKM 436

Query: 353 KHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
             R  + P +  Y  ++    K G + + + IL ++E      D   +  +I  +   G 
Sbjct: 437 NMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGR 496

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           + +    F  M E  C PD+I   + I      GM
Sbjct: 497 IAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGM 531



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 145/336 (43%), Gaps = 7/336 (2%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D  I   + Q A+ +F    Q   Y     +F  ++  + K    ++A  L E M   G
Sbjct: 205 MDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFG 264

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
             P    +  LV+   ++  + +    +  ++    C P+V TY+ +I    K  R +  
Sbjct: 265 CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDA 324

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +  +M  +G   + VTYN +I+GYGKA       + +  M+    C PD+ T +S+I 
Sbjct: 325 MAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILR-RCLPDVVTFSSLID 383

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FF 323
            Y   G ++   K + E     ++ +  T  I+  ++ +     +    +  M  R    
Sbjct: 384 GYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIA 443

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P    YN VI+   K G +++      +M+ +G +P+  TY  L+  +   G I +  + 
Sbjct: 444 PQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTF 503

Query: 384 LRQVENS----DVILDTPFFNCIISAYGQAGDVEKM 415
             ++  +    D I+   F +C++ + G  G+V+ +
Sbjct: 504 FHKMVETGCSPDSIVVNSFISCLLKS-GMPGEVDHI 538



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 35/261 (13%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
             L   + +  S L +  SA +Y  +I    ++ +  +    F  M +  G  P+   L+
Sbjct: 108 LHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLS 167

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY-GRAGMYDKMRSVMDFMQK 319
            +  +   +G ++      ++ +  G   +    N L   + G   + D +     ++Q 
Sbjct: 168 FLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQG 227

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
             + P V ++N+VI+   K G ++K  E  ++M   G  P+++T+  LV+   +A  + K
Sbjct: 228 GVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSK 287

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +LR+++   V                                  C+P+ +T+ ++I 
Sbjct: 288 GREVLRRLQRDGV----------------------------------CMPNVVTYTSVIS 313

Query: 440 AYNALGMTEAAQNLENKMIAM 460
            Y   G  E A  + N M+A+
Sbjct: 314 GYCKAGRMEDAMAVYNDMVAV 334


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 17/368 (4%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L +K  GLL  +  +      + KL  +       ++A+ + ++M  + + P V  Y  L
Sbjct: 271 LDMKNNGLLPNRNTFNILVSGYCKLGWL-------KEAAQVIDLMAQNNVLPDVWTYNML 323

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC----TKFHRFDLIEKILAEM 211
           +    + G +DEAF   ++M+++    PDV TY+ LI  C    +    F+LI+K    M
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLK-LLPDVVTYNTLINGCFDCSSSLKGFELIDK----M 378

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G++ +AVTYN ++  Y K  K +   +    M ESG   PD  T N++I+ Y  +G 
Sbjct: 379 EGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESG-FSPDCVTFNTLINGYCKAGR 437

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           + +  +  +E +  G+K +  TLN +  +       D    ++    KR +F   V+Y  
Sbjct: 438 LSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGT 497

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I  + K G   +  + + +MK + + P+ ITY +++     +G   +    L ++  S 
Sbjct: 498 LIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESG 557

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           ++ D   +N II  Y + G VEK  +    M ++   PD  T   +++     GM + A 
Sbjct: 558 LVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKAL 617

Query: 452 NLENKMIA 459
            L N  I+
Sbjct: 618 KLFNTWIS 625



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 168/379 (44%), Gaps = 25/379 (6%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           + K   A+ + G ++    +       T L V+  K K  E   LL + M ++GL P+ +
Sbjct: 225 ENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD-MKNNGLLPNRN 283

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            +  LVS Y + G L EA   I D+ + ++  PDV+TY++LI    K  + D   ++  E
Sbjct: 284 TFNILVSGYCKLGWLKEAAQVI-DLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDE 342

Query: 211 MSYLGIECSAVTYNTIIDG----YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           M  L +    VTYNT+I+G        K FE ++      +E  G  P+  T N ++  Y
Sbjct: 343 MENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDK-----MEGKGVKPNAVTYNVVVKWY 397

Query: 267 GNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
              G   KM+   NE   M   G   D  T N L   Y +AG   +   +MD M ++   
Sbjct: 398 VKEG---KMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLK 454

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
              VT N ++ T      ++   +       RG   + ++Y +L+  Y K G  ++   +
Sbjct: 455 MNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKL 514

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAG----DVEKMGELFLTMKERHCVPDNITFATMIQ 439
             +++  ++I     +N +I     +G     ++K+ EL     E   VPD  T+ T+I 
Sbjct: 515 WDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELL----ESGLVPDETTYNTIIL 570

Query: 440 AYNALGMTEAAQNLENKMI 458
            Y   G  E A    NKM+
Sbjct: 571 GYCREGQVEKAFQFHNKMV 589



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 156/349 (44%), Gaps = 12/349 (3%)

Query: 114 CQTFTKLMVMLGKCKQPEQASL-LFEVMLSD----GLKPSVDVYTALVSAYGQSGLLDEA 168
           C T    +V     + P + S+ L + + SD    G+K + + +  L+        L EA
Sbjct: 177 CNTLINALV-----RYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEA 231

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
              I  MK  S C PD  +Y+ ++    K  + +    +L +M   G+  +  T+N ++ 
Sbjct: 232 IGLIGKMKDFS-CFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVS 290

Query: 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
           GY K    +E       M ++    PD++T N +I      G I++  +  +E   + + 
Sbjct: 291 GYCKLGWLKEAAQVIDLMAQN-NVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLL 349

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            D+ T N L           K   ++D M+ +   P  VTYN+V++ + K G ++     
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
            +KM+  G  P+ +T+ +L++ Y KAG + +   ++ ++    + +++   N I+     
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCG 469

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              ++   +L  +  +R    D +++ T+I  Y   G +  A  L ++M
Sbjct: 470 ERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEM 518



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 11/320 (3%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ-----SGLLDEA-FSTINDMKSVSD 180
           C +P  A+ +F  M    LKP++     L++A  +     S  L +A FS +  +     
Sbjct: 152 CNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKL----G 207

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
            K +  T++ILI  C   ++      ++ +M         V+YNTI+D   K  K  E  
Sbjct: 208 VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEAR 267

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                M ++ G  P+  T N ++S Y   G +++  +  +      V  D+ T N+L   
Sbjct: 268 DLLLDM-KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGG 326

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
             + G  D+   + D M+     P VVTYN +I          K  E   KM+ +G+KPN
Sbjct: 327 LCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPN 386

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420
           ++TY  +V  Y K G +    + LR++E S    D   FN +I+ Y +AG + +   +  
Sbjct: 387 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMD 446

Query: 421 TMKERHCVPDNITFATMIQA 440
            M  +    +++T  T++  
Sbjct: 447 EMSRKGLKMNSVTLNTILHT 466



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 4/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+     C    +   L + M   G+KP+   Y  +V  Y + G +D A + +  M
Sbjct: 354 TYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKM 413

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  S   PD  T++ LI    K  R     +++ EMS  G++ ++VT NTI+      +K
Sbjct: 414 EE-SGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 472

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTL 294
            ++     S+  + G    D  +  ++I  Y   G ++E M+ W +E     +   I T 
Sbjct: 473 LDDAYKLLSSASKRG-YFVDEVSYGTLIMGYFKDGKSVEAMKLW-DEMKEKEIIPSIITY 530

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +      +G  D+    ++ + +    P   TYN +I  + + G +EK  ++  KM  
Sbjct: 531 NTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVK 590

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +  KP+  T   L+      G++ K   +     +    +D   +N IIS   +    E+
Sbjct: 591 KSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEE 650

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             +L   M+E+   PD  T+  ++ A    G  + A+   ++++
Sbjct: 651 AFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIV 694



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 2/291 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G  P    +  L++ Y ++G L EAF  +++M S    K +  T + ++ +     
Sbjct: 413 MEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEM-SRKGLKMNSVTLNTILHTLCGER 471

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           + D   K+L+  S  G     V+Y T+I GY K  K  E    +  M E     P I T 
Sbjct: 472 KLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKE-IIPSIITY 530

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+MI    +SG  ++     NE    G+  D  T N +   Y R G  +K     + M K
Sbjct: 531 NTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVK 590

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           + F P + T NI++      G ++K  + F     +G   +++TY +++S   K     +
Sbjct: 591 KSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEE 650

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
              +L ++E   +  D   +N I+SA   AG +++  E    + E+  + D
Sbjct: 651 AFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 5/305 (1%)

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR---FDLIEKILAEMS 212
           + AY        A    N MK +   KP++ T + LI +  ++       L + I +++ 
Sbjct: 146 IGAYVACNRPHHAAQIFNRMKRLH-LKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVI 204

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
            LG++ +  T+N +I G     K  E       M +   C PD  + N+++      G +
Sbjct: 205 KLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKM-KDFSCFPDNVSYNTILDVLCKKGKL 263

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
            +      +    G+  +  T NIL   Y + G   +   V+D M +    P V TYN++
Sbjct: 264 NEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNML 323

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I    K G I++      +M++  + P+ +TY +L++        +K   ++ ++E   V
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV 383

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             +   +N ++  Y + G ++  G     M+E    PD +TF T+I  Y   G    A  
Sbjct: 384 KPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFR 443

Query: 453 LENKM 457
           + ++M
Sbjct: 444 MMDEM 448



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 122 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++LG C+  Q E+A      M+    KP +     L+      G+LD+A    N    +S
Sbjct: 568 IILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTW--IS 625

Query: 180 DCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMS--YLGIECSAVTYNTIIDGYGKAKKF 236
             K  D  TY+ +I    K  RF+    +LAEM    LG +C   TYN I+     A + 
Sbjct: 626 KGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDC--YTYNAILSALADAGRM 683

Query: 237 EEMESSFSAMVESGGCHPDIFTLN 260
           +E E   S +VE G       +LN
Sbjct: 684 KEAEEFMSRIVEQGKLQDQTISLN 707



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           L++ I AY          + +N    + +K ++ T N L  +  R   Y    SV  ++ 
Sbjct: 142 LDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVR---YPSKPSV--YLS 196

Query: 319 KRFFFPTVV--------TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           K  F   +         T+NI+I        + +      KMK     P++++Y +++  
Sbjct: 197 KAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDV 256

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             K G + +   +L  ++N+ ++ +   FN ++S Y + G +++  ++   M + + +PD
Sbjct: 257 LCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPD 316

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
             T+  +I      G  + A  L+++M  +K
Sbjct: 317 VWTYNMLIGGLCKDGKIDEAFRLKDEMENLK 347


>gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 498

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 152/309 (49%), Gaps = 2/309 (0%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  +  ++   GL  + + Y  L+     +G L++ +S IN+MK     + + + YS +I
Sbjct: 110 AERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQ-KGFQLNSFVYSKVI 168

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252
                   +     I+ E+  +G+      YN+IID +GK  + +E     S M +  G 
Sbjct: 169 GLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNM-QQQGI 227

Query: 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            PDI T NS+I  +  +GN+ K  + +++    G+  D + L  +       G ++ +R 
Sbjct: 228 TPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRE 287

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
             D M+   +  +   Y I+++ +G+ G  +  EE    +K  G+ P++  +C L +AY+
Sbjct: 288 NFDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYA 347

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
           + GL  +   +L+ +E   +  +    N +I+A+G AG   +   ++  MKE    PD +
Sbjct: 348 QQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPDVV 407

Query: 433 TFATMIQAY 441
           T++T+++AY
Sbjct: 408 TYSTLMKAY 416



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 24/329 (7%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           ++A  L   M S G  PS   YT L+      G   EA +   +M      KP +  Y+I
Sbjct: 38  DKAMTLLADMQSLGFHPSSLSYTCLIETLLSVGRTLEAEALYQEMMCFG-LKPRLKLYNI 96

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +++   K     + E++L  +  LG+  +  TY  ++D    A + E+  S  + M + G
Sbjct: 97  MLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQKG 156

Query: 251 GCHPDIFTLNS-----MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
                 F LNS     +I  Y ++G  +K      E   MG+  D    N +  ++G+ G
Sbjct: 157 ------FQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYG 210

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D+   V+  MQ++   P +VT+N +I    KAG++ K  E F KM+ +G+ P+     
Sbjct: 211 ELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILV 270

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAYGQAGDVEKMGELF 419
           +++S  ++ G      +I+R  EN D++    +      +  ++  YGQ G  +   E  
Sbjct: 271 TIISRLAEQGKW----NIIR--ENFDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECI 324

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTE 448
             +K    +P    F  +  AY   G+ E
Sbjct: 325 SALKSEGILPSASMFCVLANAYAQQGLCE 353



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 1/245 (0%)

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G E S  +YN+ I    K    ++  +  + M +S G HP   +   +I    + G   +
Sbjct: 16  GQELSGESYNSCICDCCKVGDVDKAMTLLADM-QSLGFHPSSLSYTCLIETLLSVGRTLE 74

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
            E  Y E    G+K  ++  NI+ + + + G+      V+  +          TY I+++
Sbjct: 75  AEALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEILLD 134

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
               AG +E       +MK +G + NS  Y  ++  Y   G+  K   I+ ++    + L
Sbjct: 135 YNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPL 194

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
           D   +N II  +G+ G++++  E+   M+++   PD +T+ ++I+ +   G    A  L 
Sbjct: 195 DKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELF 254

Query: 455 NKMIA 459
           +KM A
Sbjct: 255 SKMQA 259



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 139/322 (43%), Gaps = 2/322 (0%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q+ +Q     ++K++ +       ++A  + E +   G+     +Y +++  +G+ G L
Sbjct: 153 KQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGEL 212

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           DEA   +++M+      PD+ T++ LI+   K        ++ ++M   G+        T
Sbjct: 213 DEALEVLSNMQQ-QGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVT 271

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           II    +  K+  +  +F  M +S G          ++  YG  G  +  E+  +     
Sbjct: 272 IISRLAEQGKWNIIRENFDIM-KSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSE 330

Query: 286 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
           G+        +L  +Y + G+ ++   V+  M+     P ++  N++I  FG AG   + 
Sbjct: 331 GILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREA 390

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              +  MK  G+ P+ +TY +L+ AY +A    +V  I  ++E+S    D      + +A
Sbjct: 391 LSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEVPEIYSEMESSGCTPDKKAREILQAA 450

Query: 406 YGQAGDVEKMGELFLTMKERHC 427
               G      ++FL M    C
Sbjct: 451 LMVLGRRNCKFQIFLAMLADIC 472



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 136/310 (43%), Gaps = 2/310 (0%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           S G + S + Y + +    + G +D+A + + DM+S+    P   +Y+ LI++     R 
Sbjct: 14  STGQELSGESYNSCICDCCKVGDVDKAMTLLADMQSLG-FHPSSLSYTCLIETLLSVGRT 72

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
              E +  EM   G++     YN ++ G+ K K    +      +++  G H +  T   
Sbjct: 73  LEAEALYQEMMCFGLKPRLKLYNIMLRGFLK-KGLLRVAERVLRILDDLGLHRNQETYEI 131

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++    N+G +E      NE    G + +    + +   Y   GM+ K   +++ +++  
Sbjct: 132 LLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMG 191

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
                  YN +I+TFGK G +++  E    M+ +G+ P+ +T+ SL+  + KAG + K  
Sbjct: 192 MPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKAL 251

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +  +++   +  D      IIS   + G    + E F  MK          +A ++  Y
Sbjct: 252 ELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYAILVDIY 311

Query: 442 NALGMTEAAQ 451
              G  + A+
Sbjct: 312 GQYGRFQDAE 321


>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 711

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 209/492 (42%), Gaps = 82/492 (16%)

Query: 22  KEPVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPV 81
           +E VF+ + +   P P   +G   +  ++L++ L  E A+   E +VS K   + W   V
Sbjct: 149 EETVFQKKKVLPLPLPEGIVGEIVQLARNLTQNLTLEEALAEYEGRVSEK---DCWE--V 203

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           L+ L E   ++     L  F  +R Q+      +  T L  +LGK +  ++  LLF  + 
Sbjct: 204 LKLLGE---EQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMGDKLMLLFTNLP 260

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR- 200
           S      V VY A +S    SG  ++A+     M++  +  PD  T SI++    K    
Sbjct: 261 SGREFRDVHVYNAAISGLLSSGRCEDAWKVYESMEA-DNVLPDHVTCSIMVIVMRKLGHS 319

Query: 201 ----FDLIEK-------------------------------ILAEMSYLGIECSAVTYNT 225
               +   EK                               IL+E+   G+  +A+ YNT
Sbjct: 320 AKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNT 379

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           ++D Y K+ + EE E  F  M   G  H +  T N ++ AY      E +EK   E    
Sbjct: 380 LMDAYCKSNRVEEAEGLFIEMKTKGIKHTEA-TFNILMYAYSRKMQPEIVEKLMAEMQDA 438

Query: 286 GVKADIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           G+K + ++   L  +YG+   M D        M+K    PT  +Y  +I  +  +G  EK
Sbjct: 439 GLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEK 498

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQ--VENSDVILDTPF- 398
               F+ M+  G+KP+  TY +L+ A+ +AG    +MK+  ++R+  VE + V  +T   
Sbjct: 499 AYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVD 558

Query: 399 -----------------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
                                        +N +++AY + G   K+ EL   M   +  P
Sbjct: 559 GFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKP 618

Query: 430 DNITFATMIQAY 441
           D++T++TMI A+
Sbjct: 619 DSVTYSTMIYAF 630



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 142/280 (50%), Gaps = 1/280 (0%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           +A ++   +   G+  +  VY  L+ AY +S  ++EA     +MK+    K    T++IL
Sbjct: 357 EALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKT-KGIKHTEATFNIL 415

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           + + ++  + +++EK++AEM   G++ +A +Y  +I  YGK K   +M +     ++  G
Sbjct: 416 MYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDG 475

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P   +  ++I AY  SG  EK    +      G+K  I+T   L  ++ RAG    + 
Sbjct: 476 IKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLM 535

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +   M++     T VT+N +++ F K GH ++  +   K  + G+ P  +TY  L++AY
Sbjct: 536 KIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAY 595

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           ++ G   K+  +L ++   ++  D+  ++ +I A+ +  D
Sbjct: 596 ARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRD 635



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 38/244 (15%)

Query: 114 CQTFTKLMVMLGKCKQ-PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
            +++T L+   GK K   + A+  F  M  DG+KP+   YTAL+ AY  SG  ++A++  
Sbjct: 444 AKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAF 503

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
            +M+     KP + TY+ L+ +  +      + KI   M    +E + VT+NT++DG+ K
Sbjct: 504 ENMQR-EGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVDGFAK 562

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
              ++E                       +IS + N                +G+   + 
Sbjct: 563 HGHYKEA--------------------RDVISKFAN----------------VGLHPTVM 586

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N+L  +Y R G + K+  +++ M      P  VTY+ +I  F +     +   Y ++M
Sbjct: 587 TYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEM 646

Query: 353 KHRG 356
              G
Sbjct: 647 VKSG 650



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK-MEEY 348
           D+   N        +G  +    V + M+     P  VT +I++    K GH  K   ++
Sbjct: 267 DVHVYNAAISGLLSSGRCEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQF 326

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           F+KM  +G+K       +L+ ++   GL+ +   IL ++E   V  +   +N ++ AY +
Sbjct: 327 FEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCK 386

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  VE+   LF+ MK +       TF  ++ AY+     E  + L  +M
Sbjct: 387 SNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEM 435


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 154/333 (46%), Gaps = 8/333 (2%)

Query: 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           QA   F++M+     P +  +  L+    +     + FS  N+M+ ++   PD++T SIL
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMR-LAGLSPDLFTLSIL 132

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
                  +R       +A +   G   + VTY T+I G     +  E    F  M +  G
Sbjct: 133 ANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM-QKLG 191

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWY----NEFNLMGV--KADIQTLNILTKSYGRAG 305
           C P+  T  ++I     +GN+    K +    N+ +  GV  K  + T +I+     + G
Sbjct: 192 CTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVG 251

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             D+ + + + M+ +   P V++Y+ +I  F  AG  ++ +  F +M  +G++P+ +T+ 
Sbjct: 252 REDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFS 311

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
            L+    K G + +   +L  +    ++ +   +N +I  +   GD+    ELFL+M  +
Sbjct: 312 VLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSK 371

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              PD I++ T+I  Y      + A NL N+M+
Sbjct: 372 GLEPDEISYTTLINGYCKTWKVKEAMNLYNEML 404



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 7/369 (1%)

Query: 95  QLALKIFG-LLRQQQWYQARCQ--TFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSV 149
            +ALK+   +L     Y   C+    T  +++ G CK  + ++A  LFE M + G+ P V
Sbjct: 213 NIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDV 272

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ L+  +  +G  D++    ++M      +PD+ T+S+LI +  K  +    +K+L 
Sbjct: 273 ISYSTLIHGFCCAGKWDQSKHLFDEMVD-QGVQPDMVTFSVLIDTLCKEGKVTEAKKLLE 331

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
            M   GI  + +TYN++IDG+            F +M  S G  PD  +  ++I+ Y  +
Sbjct: 332 VMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM-PSKGLEPDEISYTTLINGYCKT 390

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
             +++    YNE   +G   ++ T   L K   + G     + +   M+          Y
Sbjct: 391 WKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIY 450

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
            I ++   K   + +  E F ++K    K N   Y  L+    KAG +     +  ++  
Sbjct: 451 GIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQ 510

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
             +  D   +N +I  + + G V+    LF  M+E  C PD I + T++  +      E 
Sbjct: 511 EGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEE 570

Query: 450 AQNLENKMI 458
              L +KM+
Sbjct: 571 VIKLLHKMV 579



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           +L  G  P+V  YT L+        + EA      M+ +  C P+  TY  LIK   +  
Sbjct: 152 ILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLG-CTPNAVTYGTLIKGLCQTG 210

Query: 200 RFDLIEKILAEM----SYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 253
             ++  K+  EM    S  G+ C    +TY+ IIDG  K  + +E +  F  M ++ G  
Sbjct: 211 NVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEM-KAQGMI 269

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD+ + +++I  +  +G  ++ +  ++E    GV+ D+ T ++L  +  + G   + + +
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           ++ M +R   P ++TYN +I+ F   G +    E F  M  +G++P+ I+Y +L++ Y K
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCK 389

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
              + +  ++  ++       +   +  ++    Q G V    +LF  MK
Sbjct: 390 TWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMK 439



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 133/308 (43%), Gaps = 19/308 (6%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           KW  +  +F  +  Q   Q    TF+ L+  L K  +  +A  L EVM+  G+ P++  Y
Sbjct: 287 KWDQSKHLFDEMVDQ-GVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITY 345

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L+  +   G L+ A      M S    +PD  +Y+ LI    K  +      +  EM 
Sbjct: 346 NSLIDGFCMVGDLNSARELFLSMPS-KGLEPDEISYTTLINGYCKTWKVKEAMNLYNEML 404

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG----- 267
            +G   +  TY T++ G  +  K  + +  F  M   G       + NS I  YG     
Sbjct: 405 QVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYG------VSANSQI--YGIFLDG 456

Query: 268 ---NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
              N    E ME  +NE      K +I+  + L     +AG  +    + + + +    P
Sbjct: 457 LCKNDCLFEAME-LFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQP 515

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            VVTYNI+I  F K G ++     F+KM+  G  P+ I Y +L+  + +   + +V  +L
Sbjct: 516 DVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLL 575

Query: 385 RQVENSDV 392
            ++   DV
Sbjct: 576 HKMVQKDV 583



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 114/244 (46%), Gaps = 19/244 (7%)

Query: 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192
           A  LF  M S GL+P    YT L++ Y ++  + EA +  N+M  V    P+V TY  L+
Sbjct: 361 ARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGK-SPNVTTYGTLL 419

Query: 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFEEMES-SFS 244
           K   +  +    +K+   M   G+  ++  Y   +DG  K        + F E++S +F 
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
             +E+  C         +I     +G +E   + + + +  G++ D+ T NI+   + + 
Sbjct: 480 LNIENYSC---------LIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKV 530

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G  D    + + M++    P ++ YN ++  F +   +E++ +   KM  + + PN+ + 
Sbjct: 531 GQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS- 589

Query: 365 CSLV 368
           C++V
Sbjct: 590 CTIV 593



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K      A+++F  L+    ++   + ++ L+  L K  + E A  LFE +  +G
Sbjct: 454 LDGLCKNDCLFEAMELFNELKSYN-FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEG 512

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           L+P V  Y  ++  + + G +D A      M+  + C PD+  Y+ L+    + ++ + +
Sbjct: 513 LQPDVVTYNIMIHGFCKVGQVDNANILFEKMEE-NGCTPDIIAYNTLLCGFCEGNKLEEV 571

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            K+L +M    +  +A +   ++D   K +K+++
Sbjct: 572 IKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKK 605


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 150/326 (46%), Gaps = 2/326 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+  +    + + A  L+  M+  G +P V  Y  L++    SG  + A      M
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  + CKP+V TY+ +I S  K    +     L+EM   GI   A+TYN+I+ G     +
Sbjct: 225 EQ-NGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ 283

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E    F  M E  GC PD+ T N +I +      +     + +E    G+  D+ T  
Sbjct: 284 LNEATRLFKRM-EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYT 342

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +       G  ++   +   M+++   P VV YN +I++  K   +    E+  +M  R
Sbjct: 343 TILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR 402

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN++TY +++  +   G + +   + +++   +V+ +T  F+ ++    Q G V + 
Sbjct: 403 GIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEA 462

Query: 416 GELFLTMKERHCVPDNITFATMIQAY 441
             +F TM E+   P+  T+  ++  Y
Sbjct: 463 RWVFETMTEKGVEPNIYTYNALMNGY 488



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 140/312 (44%), Gaps = 2/312 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G++P V  +T L++     G +  A    N+M   S  +PDV +Y+ LI       
Sbjct: 154 MFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVR-SGHEPDVISYNTLINGLCNSG 212

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
             ++   +  +M   G + + VTYNTIID   K +   +     S MV   G  PD  T 
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMV-GRGIPPDAITY 271

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           NS++      G + +  + +      G K D+ T NI+  S  +  + +     +  M  
Sbjct: 272 NSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVD 331

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           +   P VVTY  ++      G + +    FKKM+ +G KP+ + Y +++ +  K  L+  
Sbjct: 332 QGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVND 391

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
               L ++ +  +  +   ++ I+  +   G +++  +LF  M  R+ +P+ +TF+ ++ 
Sbjct: 392 AMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVD 451

Query: 440 AYNALGMTEAAQ 451
                GM   A+
Sbjct: 452 GLCQEGMVSEAR 463



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 158/392 (40%), Gaps = 35/392 (8%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q   +    T+  ++  L K +    A+     M+  G+ P V  YT ++      G L
Sbjct: 295 EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           +EA      M+    CKPDV  Y+ +I S  K    +   + L+EM   GI  +AVTY+T
Sbjct: 355 NEAIRLFKKMEQ-KGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYST 413

Query: 226 IIDGYGKAKKFEEMESSFSAMVESG----------------------------------G 251
           I+ G+    + +E    F  MV                                     G
Sbjct: 414 ILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKG 473

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
             P+I+T N++++ Y     + +  K +      G   D+ + NIL   Y  +   DK +
Sbjct: 474 VEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAK 533

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
           +++  M  +   P  VTYN +++     G +   +E FKKM   GM P  +TY  L++  
Sbjct: 534 ALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGL 593

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K G + +   + + ++   +  D   +  +I      G +E    LF  +      P  
Sbjct: 594 CKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPG 653

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
            T+  MI+     G+++ A  L  K   MK N
Sbjct: 654 RTYNVMIKGLLKEGLSDEAYELFRKWKMMKHN 685



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 147/343 (42%), Gaps = 2/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K +  + K KQ      L   M   G+  +V     L++   +   +D A S    M 
Sbjct: 96  FGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMF 155

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +   +PDV T++ LI       +  +  ++  EM   G E   ++YNT+I+G   +   
Sbjct: 156 KLG-IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNT 214

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                 F  M E  GC P++ T N++I +      +     + +E    G+  D  T N 
Sbjct: 215 NMAVHVFKKM-EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNS 273

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           +       G  ++   +   M++    P VVTYNI+I++  K   +    ++  +M  +G
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG 333

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ +TY +++      G + +   + +++E      D   +N II +  +   V    
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAM 393

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           E    M +R   P+ +T++T++  +  LG  + A  L  +M+ 
Sbjct: 394 EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG 436



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 2/293 (0%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           +D+A ++   M  ++  +P +  +   + S  K  ++  +  +  +M   G+  +  + N
Sbjct: 74  VDDALASFYRMARMNP-RPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLN 132

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+   +    +   S +  M + G   PD+ T  ++I+   N G I+   + YNE   
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLG-IQPDVITFTTLINGVCNEGKIKVAVELYNEMVR 191

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G + D+ + N L      +G  +    V   M++    P VVTYN +I++  K   +  
Sbjct: 192 SGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVND 251

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             ++  +M  RG+ P++ITY S+V      G + +   + +++E +    D   +N II 
Sbjct: 252 AMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIID 311

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +  +   V    +    M ++   PD +T+ T++     LG    A  L  KM
Sbjct: 312 SLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           LF  M+     PS+  ++ ++S   +S   D   S  + M+ V     D+Y+Y+I+I   
Sbjct: 56  LFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHME-VCGIGHDLYSYNIVINCL 114

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            +  RF +   ++ +M   G E   VT +++I+G+ +  +  +     S M E  G  PD
Sbjct: 115 CRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM-EEMGFRPD 173

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           +   N++I      G +    + ++     GV+AD  T N L      +G +     +M 
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  R   P V+T+  VI+ F K G   +  + +++M  R + P+  TY SL++     G
Sbjct: 234 DMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHG 293

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + +   +L  +     + D   +N +I+ + ++  V++  +LF  M +R  V D IT+ 
Sbjct: 294 RVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYN 353

Query: 436 TMIQAYNALGMTEAAQNLENKM 457
           T+IQ Y   G  +AAQ + ++M
Sbjct: 354 TIIQGYFQAGRPDAAQEIFSRM 375



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 158/362 (43%), Gaps = 47/362 (12%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
            RC  F   + ++GK             M+  G +P V   ++L++ + Q   + +A   
Sbjct: 115 CRCSRFVIALSVVGK-------------MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL 161

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           ++ M+ +   +PDV  Y+ +I    K    +   ++   M   G+   AVTYN+++ G  
Sbjct: 162 VSKMEEMG-FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLC 220

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
            + ++ +       MV      P++ T  ++I  +   G   +  K Y E     V  D+
Sbjct: 221 CSGRWSDAARLMRDMVMRD-IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDV 279

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L       G  D+ + ++D M  +   P VVTYN +I  F K+  +++  + F++
Sbjct: 280 FTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFRE 339

Query: 352 MKHRGMKPNSITYCSLVSAYSKAG-------LIMKVDS---------------------- 382
           M  RG+  ++ITY +++  Y +AG       +  ++DS                      
Sbjct: 340 MAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEK 399

Query: 383 ---ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              +   ++ S++ LD   +N +I    + G+VE   +LF ++  +   PD +++ TMI 
Sbjct: 400 ALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMIS 459

Query: 440 AY 441
            +
Sbjct: 460 GF 461



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 135/303 (44%), Gaps = 36/303 (11%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK      A  LF+ M  DG++     Y +LV+    SG   +A   + DM  + D  
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIV 241

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+V T++ +I    K  +F    K+  EM+   ++    TYN++I+G     + +E +  
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV + GC PD+ T N++I+ +  S  +++  K + E    G+  D  T N + + Y 
Sbjct: 302 LDLMV-TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360

Query: 303 RAGMYDKMRSVMDFMQKRFFFPT--------------------------------VVTYN 330
           +AG  D  + +   M  R    T                                + TYN
Sbjct: 361 QAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 420

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           IVI    K G++E   + F+ +  +G+KP+ ++Y +++S + +     K D + R+++  
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480

Query: 391 DVI 393
            ++
Sbjct: 481 GLL 483



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 7/323 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F+K++  + K K  +    LF  M   G+   +  Y  +++   +      A S +  M 
Sbjct: 72  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 131

Query: 177 SVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                +PDV T S LI    + +R FD I+ ++++M  +G     V YNTIIDG  K   
Sbjct: 132 KFG-YEPDVVTVSSLINGFCQGNRVFDAID-LVSKMEEMGFRPDVVIYNTIIDGSCKIGL 189

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    F  M E  G   D  T NS+++    SG      +   +  +  +  ++ T  
Sbjct: 190 VNDAVELFDRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   + + G + +   + + M +R   P V TYN +I      G +++ ++    M  +
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK 308

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+ +TY +L++ + K+  + +   + R++    ++ DT  +N II  Y QAG  +  
Sbjct: 309 GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 368

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            E+F  M  R   P+  T++ ++
Sbjct: 369 QEIFSRMDSR---PNIRTYSILL 388



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 5/244 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT ++ +  K  +  +A  L+E M    + P V  Y +L++     G +DEA   + D+
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DL 304

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                C PDV TY+ LI    K  R D   K+  EM+  G+    +TYNTII GY +A +
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +  +  FS M       P+I T + ++     +  +EK    +       ++ DI T N
Sbjct: 365 PDAAQEIFSRM----DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 420

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     + G  +    +   +  +   P VV+Y  +I  F +    +K +  ++KM+  
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480

Query: 356 GMKP 359
           G+ P
Sbjct: 481 GLLP 484



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 116/277 (41%), Gaps = 36/277 (12%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  +S ++    K   +DL+  +   M   GI     +YN +I+   +  +F    S 
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M++ G   PD+ T++S+I+ +     +                     +++++K   
Sbjct: 127 VGKMMKFGY-EPDVVTVSSLINGFCQGNRV------------------FDAIDLVSK--- 164

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
                         M++  F P VV YN +I+   K G +    E F +M+  G++ +++
Sbjct: 165 --------------MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAV 210

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY SLV+    +G       ++R +   D++ +   F  +I  + + G   +  +L+  M
Sbjct: 211 TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM 270

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             R   PD  T+ ++I      G  + A+ + + M+ 
Sbjct: 271 TRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 307


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 150/319 (47%), Gaps = 5/319 (1%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           ML  G +PSV  YT L+ A  +S    EA + +++M++   C P++ TY+++I    +  
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRA-KGCTPNIVTYNVIINGMCREG 236

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R D  ++IL  +S  G +   V+Y T++ G   A+++++++  F+ MV+   C P+  T 
Sbjct: 237 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDK-KCVPNEVTF 295

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           + ++  +   G +E+  +   + +  G   +    NI+  +  + G  D     ++ M  
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 355

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P  ++Y  V+    +AG  E  +E   +M  +   PN +T+ + +    + GLI +
Sbjct: 356 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 415

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
              ++  +      +    +N ++  +   G V+   ELF  +    C P+ IT+ T++ 
Sbjct: 416 AIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLT 472

Query: 440 AYNALGMTEAAQNLENKMI 458
                   +AA  L  +MI
Sbjct: 473 GLCHAERLDAAAELLAEMI 491



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 155/352 (44%), Gaps = 5/352 (1%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           Q+  Q    T+T L+  + K     +A  + + M + G  P++  Y  +++   + G +D
Sbjct: 180 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 239

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A   +N + S    +PD+ +Y+ ++K      R+D ++ + AEM       + VT++ +
Sbjct: 240 DAKEILNRLSSYGF-QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDML 298

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           +  + +    E        M +  GC P+    N +I+A    G ++    + N   + G
Sbjct: 299 VRFFCRGGMVERAIQVLQQMSQH-GCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 357

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              D  +   + +   RAG ++  + ++  M ++   P  VT+N  I    + G IE+  
Sbjct: 358 CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAI 417

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           +  + M   G     +TY +LV  +   G   +VDS L    N     +T  +  +++  
Sbjct: 418 KLIELMPEYGCSVGIVTYNALVHGFCVQG---RVDSALELFNNLPCEPNTITYTTLLTGL 474

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             A  ++   EL   M ++ C  + +TF  ++  +   G  E A  L N+M+
Sbjct: 475 CHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMM 526



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 19/300 (6%)

Query: 102 GLLRQQQWYQAR----------CQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
           GL R  +W  A+          C     TF   + +L +    EQA  L E+M   G   
Sbjct: 371 GLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSV 430

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  Y ALV  +   G +D A    N++     C+P+  TY+ L+       R D   ++
Sbjct: 431 GIVTYNALVHGFCVQGRVDSALELFNNLP----CEPNTITYTTLLTGLCHAERLDAAAEL 486

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           LAEM       +AVT+N ++  + +    EE     + M+E G C P++ T N+++    
Sbjct: 487 LAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG-CTPNLITFNTLLDGIT 545

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
              N E+  +  +     GV  D  T + +     R    ++   ++  +Q     P V 
Sbjct: 546 KDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVG 605

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
            YN ++    K    ++  ++F  M   G  PN  TY  L+   +  GL+ +   +L ++
Sbjct: 606 MYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSEL 665



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/379 (17%), Positives = 163/379 (43%), Gaps = 40/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    +    E+A  + + M   G  P+  +   +++A  + G +D+A+  +N+M
Sbjct: 294 TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM 353

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-------------SYLGIEC---- 218
             +  C PD  +Y+ +++   +  R++  +++L EM             +++ I C    
Sbjct: 354 -GMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGL 412

Query: 219 ------------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
                               VTYN ++ G+    + +     F+ +     C P+  T  
Sbjct: 413 IEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL----PCEPNTITYT 468

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
           ++++   ++  ++   +   E        +  T N+L   + + G  ++   +++ M + 
Sbjct: 469 TLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEH 528

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P ++T+N +++   K  + E+  E    +  +G+  ++ITY S+V   S+     + 
Sbjct: 529 GCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEA 588

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +L  V++  +      +N I+ A  +  + ++  + F  M    C+P+  T+  +I+ 
Sbjct: 589 IQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEG 648

Query: 441 YNALGMTEAAQNLENKMIA 459
               G+ + A+ + +++ A
Sbjct: 649 LAHEGLLKEARYVLSELYA 667



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 69/147 (46%)

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           RS    M +R   P+VVTY +++E   K+    +      +M+ +G  PN +TY  +++ 
Sbjct: 172 RSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING 231

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             + G +     IL ++ +     D   +  ++     A   + +  LF  M ++ CVP+
Sbjct: 232 MCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPN 291

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
            +TF  +++ +   GM E A  +  +M
Sbjct: 292 EVTFDMLVRFFCRGGMVERAIQVLQQM 318


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 4/327 (1%)

Query: 121 MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           ++M G CK  +   A ++F+ +   GL+PSV  +  L+S Y +S  ++E F   + M+S 
Sbjct: 231 ILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMES- 289

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
               PDV+TYS LI    K  R +    +  EM  +G+  + VT+ T+IDG  K  K + 
Sbjct: 290 ERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDL 349

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
              +F  M + G   PD+ T N++I+     G++++  K  NE    G K D  T   L 
Sbjct: 350 ALRNFEIMKDRG-IRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               + G  D    + D M +       V +  +I    + G +   E   K M   G K
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY  ++  + K G +     +L++++    +     +N +++ + + G ++    L
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKML 528

Query: 419 FLTMKERHCVPDNITFATMIQAYNALG 445
              M     VP++ITF  ++  +   G
Sbjct: 529 LHAMLNMEVVPNDITFNILLDGHCKHG 555



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 7/278 (2%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+VY ++IL+    K         +  E+S  G+  S V++NT+I GY ++K  EE    
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEE-GFV 282

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
             +++ES    PD+FT +++I+       +E+    ++E   MG+  +  T   L     
Sbjct: 283 LKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQC 342

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G  D      + M+ R   P ++TYN +I    + G +++  +   +M   G KP+ I
Sbjct: 343 KHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKI 402

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKMGELF 419
           T+ +L+    K G +     I  ++    + LD   F  +IS     G+  D E+M +  
Sbjct: 403 TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDM 462

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           L+   +   PD+ T+  +I  +   G  +    L  +M
Sbjct: 463 LSAGHK---PDDPTYTMVIDCFCKKGDVKMGAKLLKEM 497



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 2/295 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F  L+    + K  E+  +L  VM S+ + P V  Y+AL++   +   ++EA    ++M
Sbjct: 263 SFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +    P+  T++ LI    K  + DL  +    M   GI    +TYN +I+G  +   
Sbjct: 323 CEMG-LVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGD 381

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E     + M+   G  PD  T  +++      G+++   +  +     G++ D     
Sbjct: 382 LKEARKLLNEMI-GNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFT 440

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     R G       ++  M      P   TY +VI+ F K G ++   +  K+M+  
Sbjct: 441 ALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRD 500

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           G  P  +TY +L++ + K G +     +L  + N +V+ +   FN ++  + + G
Sbjct: 501 GRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 4/263 (1%)

Query: 115 QTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
             FT   ++ G CK+   E+A+ LF+ M   GL P+   +T L+    + G +D A    
Sbjct: 295 DVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNF 354

Query: 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232
             MK     +PD+ TY+ LI    +        K+L EM   G +   +T+ T++DG  K
Sbjct: 355 EIMKD-RGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCK 413

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               +        MVE  G   D     ++IS     G +   E+   +    G K D  
Sbjct: 414 DGDMDSALEIKDRMVEE-GIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDP 472

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T  ++   + + G       ++  MQ+    P VVTYN ++  F K G ++  +     M
Sbjct: 473 TYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAM 532

Query: 353 KHRGMKPNSITYCSLVSAYSKAG 375
            +  + PN IT+  L+  + K G
Sbjct: 533 LNMEVVPNDITFNILLDGHCKHG 555


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 169/380 (44%), Gaps = 41/380 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           ++  L+  L K  Q   A  L   +  +  +P V +Y  ++    +  L+ +AF    +M
Sbjct: 156 SYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEM 215

Query: 176 --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
             K V    P+V TY+ LI       + D    +L EM    +  +  T+NT++DG  K 
Sbjct: 216 FEKRVF---PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKE 272

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            K  E +S  + M++ G   PD+FT N+++  Y       K +  +N    MGV  D+ +
Sbjct: 273 GKMREAKSLVAVMMKEG-VGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHS 331

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +++     +  M D+   + + M+     P VV Y+ +I+   K+G I    +Y  +M 
Sbjct: 332 YSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMH 391

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAG 410
            RG  PN ITY SL+ A  K+  + K  ++L+++++  +  +   +N ++      G+  
Sbjct: 392 DRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLT 451

Query: 411 DVEKMGE--------------------------------LFLTMKERHCVPDNITFATMI 438
           D +K+ +                                L   M+++ CVPD I + T+I
Sbjct: 452 DAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETII 511

Query: 439 QAYNALGMTEAAQNLENKMI 458
            A+    M + A+ L  +MI
Sbjct: 512 NAFFEKDMNDKAEKLLREMI 531



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 10/294 (3%)

Query: 99  KIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALV 156
           K FGLL +           T   ++ G CK+ +  +A  L  VM+ +G+ P V  Y AL+
Sbjct: 242 KAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301

Query: 157 SAY---GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213
             Y    ++G     F+ +  M        DV++YS++I   +K    D    +   M  
Sbjct: 302 DGYFLVKEAGKAKNVFNIMAQMGVTC----DVHSYSVMISGLSKMKMLDEAMDLFEGMRN 357

Query: 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273
             +    V Y+++IDG  K+ +          M + G   P++ T  S+I A   S  ++
Sbjct: 358 ENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQ-PPNVITYTSLIDALCKSHQVD 416

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           K      +    G++A++ T NIL     + G     + V   +  +     VVTY+I+I
Sbjct: 417 KAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMI 476

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
               K    ++      KM+ +G  P++I Y ++++A+ +  +  K + +LR++
Sbjct: 477 NGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 146/363 (40%), Gaps = 45/363 (12%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F K++  L K K       LF+ M   G++ +      L+++Y     ++ AFS    + 
Sbjct: 52  FGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKIL 111

Query: 177 SVSDCKPDVYTYSILI---------KSCTKFH--------RFD----------------- 202
            +   +PD+ TY+ LI         K    FH        + D                 
Sbjct: 112 KLGY-QPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQT 170

Query: 203 -----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
                L+ KI  E+    +    V YNTIIDG  K K   +    +  M E     P++ 
Sbjct: 171 GPALRLLRKIEGEICRPDV----VMYNTIIDGLCKDKLVRDAFDLYCEMFEK-RVFPNVV 225

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T  S+I  +   G ++K     NE  L  V  ++ T N L     + G   + +S++  M
Sbjct: 226 TYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVM 285

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            K    P V TYN +++ +       K +  F  M   G+  +  +Y  ++S  SK  ++
Sbjct: 286 MKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKML 345

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +   +   + N +VI D   ++ +I    ++G +    +    M +R   P+ IT+ ++
Sbjct: 346 DEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSL 405

Query: 438 IQA 440
           I A
Sbjct: 406 IDA 408



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 128/296 (43%), Gaps = 2/296 (0%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L++A  + N M  +    P +  +  ++ S  K   + ++  +   M   GI+ + +T N
Sbjct: 30  LNDAIDSFNRMLRMRP-PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLN 88

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I+ Y   ++     S F+ +++ G   PDI T  ++I     +G +++   +++    
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGY-QPDIITYTTLIRGLCLNGQVKESLNFHDRLVS 147

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+K D  +   L     + G       ++  ++     P VV YN +I+   K   +  
Sbjct: 148 QGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRD 207

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             + + +M  + + PN +TY SL+  +   G + K   +L ++   +V  +   FN ++ 
Sbjct: 208 AFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVD 267

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              + G + +   L   M +    PD  T+  ++  Y  +     A+N+ N M  M
Sbjct: 268 GLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQM 323



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%)

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           +    L G++++  TLNIL  SY      +   SV   + K  + P ++TY  +I     
Sbjct: 72  FQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCL 131

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G +++   +  ++  +G+K + ++Y +L++   K G       +LR++E      D   
Sbjct: 132 NGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVM 191

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +N II    +   V    +L+  M E+   P+ +T+ ++I  +  +G  + A  L N+M+
Sbjct: 192 YNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMV 251

Query: 459 AMKEN 463
               N
Sbjct: 252 LKNVN 256



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  L K  Q ++A  L + +   G++ ++  Y  LV    + G L +A     D+
Sbjct: 401 TYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDL 460

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +     DV TYSI+I    K   FD    +L++M   G    A+ Y TII+ + +   
Sbjct: 461 L-MKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDM 519

Query: 236 FEEMESSFSAMVE 248
            ++ E     M++
Sbjct: 520 NDKAEKLLREMID 532


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 12/352 (3%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           +A   T++ L+  L   K+   A  L E M S GL+   D Y+ ++ +  +SG++D+A  
Sbjct: 84  RASVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKV 143

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDG 229
            +  M S  +C PD   Y  +I+  +K  R D   +I  E       C S VTYN+++ G
Sbjct: 144 LVERMIS-RNCVPDARIYDPVIEELSKTGRVDEAVEIAKEAD--AKHCTSVVTYNSLVLG 200

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + KA++ +     F+ M  +G   PDI+T N +       G      K     N  GV  
Sbjct: 201 FLKARRLKRGIKVFTRMARTGP-SPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLP 259

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D+ T N L         Y +  +++  M  R   P  +TY I+++   +    ++  E F
Sbjct: 260 DVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELF 319

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP----FFNCIISA 405
           +++  R + PN  TY +++SA  KAG + +   +   +  SD    TP     +  +I  
Sbjct: 320 QRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDC---TPPNAITYRALIHG 376

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
                ++E+   L   M +R C PD   + T++ A+   G  + A  L  +M
Sbjct: 377 LCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERM 428



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 152/374 (40%), Gaps = 49/374 (13%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASL-----LFEVMLSDGLKPSVDVYTALVSAYGQ 161
           Q W +   Q F  L V     K  EQ +L     L + M  +G   S+      +    +
Sbjct: 12  QLWKK---QAFPALAV-----KYSEQGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCK 63

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
           +G +D A   + + K+    +  V TYSIL+ + T   R +   ++L +M  +G+E    
Sbjct: 64  AGNVDGALEFLREAKNSFSLRASVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKD 123

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD-------------------------- 255
           TY+ II    K+   ++ +     M+ S  C PD                          
Sbjct: 124 TYSLIIHSLCKSGMVDKAKVLVERMI-SRNCVPDARIYDPVIEELSKTGRVDEAVEIAKE 182

Query: 256 --------IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
                   + T NS++  +  +  +++  K +      G   DI T NIL +   R G++
Sbjct: 183 ADAKHCTSVVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLW 242

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
                ++  M +    P VVT+N +I    +     +     ++M  RG  PN+ITY  L
Sbjct: 243 RFAYKLLPRMNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTIL 302

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +   ++     +   + +++ +  +  +   +N ++SA  +AG +++   LF  M    C
Sbjct: 303 LKWLARNARTDECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDC 362

Query: 428 VPDN-ITFATMIQA 440
            P N IT+  +I  
Sbjct: 363 TPPNAITYRALIHG 376



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 94  WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153
           W+ A K+   +  Q        TF  L+  L +  +  +A  L + M+S G  P+   YT
Sbjct: 242 WRFAYKLLPRM-NQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYT 300

Query: 154 ALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            L+    ++   DE    F  + D K      P+VYTY+ ++ +  K  R D   ++   
Sbjct: 301 ILLKWLARNARTDECVELFQRLLDRKLA----PNVYTYNTVMSALCKAGRLDQAHRLFGV 356

Query: 211 MSYLGIECS---AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           M  L  +C+   A+TY  +I G     + E       AM + G C PD+    ++++A+ 
Sbjct: 357 M--LASDCTPPNAITYRALIHGLCLKMELERAVLLLDAMAKRG-CAPDVACYGTIVAAFC 413

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTL 294
             G I++  +        G K   +TL
Sbjct: 414 KQGRIDEAFELLERMPFAGDKVMFRTL 440



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWP-KPVLEALDEAIKQKKWQLALKIFGLLRQQQW 109
           L++  RT+  ++  ++ +  K   N++    V+ AL    K  +   A ++FG++     
Sbjct: 306 LARNARTDECVELFQRLLDRKLAPNVYTYNTVMSAL---CKAGRLDQAHRLFGVMLASDC 362

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
                 T+  L+  L    + E+A LL + M   G  P V  Y  +V+A+ + G +DEAF
Sbjct: 363 TPPNAITYRALIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAF 422

Query: 170 STINDMKSVSD 180
             +  M    D
Sbjct: 423 ELLERMPFAGD 433


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 2/305 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F+ M+  G+ P+V  Y  L+  +  +G L+       +M+  + C P+V TY+ +I + 
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMER-NGCLPNVVTYNTIIDAY 248

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  +     K+L  M+  G+  + ++YN +I+G  +  + +E       M +     PD
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PD 307

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T N++I+ Y N GN  +    + E    G+  ++ T   L  S  +AG  ++    +D
Sbjct: 308 RVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLD 367

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R   P   TY  +I+ F + G +++  +  K+M   G  P  ITY +L++ +   G
Sbjct: 368 QMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILG 427

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +     +L+++     I D   ++ IIS + +  ++EK  +L + M  +   PD  T++
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS 487

Query: 436 TMIQA 440
           ++IQ 
Sbjct: 488 SLIQG 492



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           S G  P V  Y A++ A  ++    +    I      S   P+VYTY+ILI+        
Sbjct: 160 SYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNL 219

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           ++      EM   G   + VTYNTIID Y K +K  E       M   G  +P++ + N 
Sbjct: 220 EMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG-LNPNLISYNV 278

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+     G +++  +   E +      D  T N L   Y   G + +   +   M K  
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P VVTY  +I +  KAG++ +  E+  +M+ RG+ PN  TY +L+  +S+ G + +  
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I++++  +        +N +I+ +   G +E    L   M ER  +PD ++++T+I  +
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGF 458

Query: 442 NALGMTEAAQNLENKMIA 459
                 E A  L+ +M+A
Sbjct: 459 CRNQELEKAFQLKVEMVA 476



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 171/381 (44%), Gaps = 21/381 (5%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L LK     R QQ++  +C+     ++   K  +  Q SL  EV+++   +   D++  L
Sbjct: 63  LVLKFLDWARSQQFFSFQCKCLALHILTRYKLYKTAQ-SLAEEVVVNTVDETGEDLFQCL 121

Query: 156 VSAYGQS-----------------GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
            ++Y Q                   L+++A S +N  KS     P V +Y+ ++ +  + 
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYG-FMPGVLSYNAILDAVIRT 180

Query: 199 HR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            +   + E I  EM   G+  +  TYN +I G+  A   E M   F   +E  GC P++ 
Sbjct: 181 KQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLE-MGLXFFGEMERNGCLPNVV 239

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N++I AY     I +  K      L G+  ++ + N++     R G   +   +++ M
Sbjct: 240 TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            KR + P  VT+N +I  +   G+  +      +M   G+ PN +TY +L+++  KAG +
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +    L Q+ +  +  +   +  +I  + Q G +++  ++   M E    P  IT+  +
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 438 IQAYNALGMTEAAQNLENKMI 458
           I  +  LG  E A  L  +MI
Sbjct: 420 INGHCILGRMEDASGLLQEMI 440



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 21/342 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  + K     +A    + M   GL P+   YT L+  + Q G L +A+  + +M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   P + TY+ LI       R +    +L EM   G     V+Y+TII G+ +   
Sbjct: 405 VE-NGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN-- 461

Query: 236 FEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +E+E +F   VE  + G  PD+ T +S+I        + ++   + E   +G+  D  T
Sbjct: 462 -QELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L  +Y   G  DK   + D M ++ F P +VTYN++I  F K    ++ +    K+ 
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 354 HRGMKPNSITYCSLVS---------------AYSKAGLIMKVDSILRQVENSDVILDTPF 398
           +    PN ITY +L+                 +   GL+ + D +L  +      L+   
Sbjct: 581 YEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEV 640

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +N II  + + G++EK   L+  M      P ++T   + ++
Sbjct: 641 YNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKS 682



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 155/344 (45%), Gaps = 4/344 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++    K ++  +A  L  +M   GL P++  Y  +++   + G + E    + +M
Sbjct: 240 TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S     PD  T++ LI        F     + AEM   G+  + VTY T+I+   KA  
Sbjct: 300 -SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN 358

Query: 236 FEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
               ME  F   +   G HP+  T  ++I  +   G +++  +   E    G    I T 
Sbjct: 359 LNRAME--FLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L   +   G  +    ++  M +R F P VV+Y+ +I  F +   +EK  +   +M  
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G+ P+  TY SL+    K   + +V  + +++ +  +  D   +  +I+AY   GD++K
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
              L   M ++   PD +T+  +I  +N    T+ A+ L  K++
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 151/351 (43%), Gaps = 4/351 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LLR            +  +V+ G C+  Q ++ S + E M      P    +  L++ 
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLING 317

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y   G   +A     +M   +   P+V TY+ LI S  K    +   + L +M   G+  
Sbjct: 318 YCNVGNFHQALVLHAEMVK-NGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +  TY T+IDG+ +    ++       MVE+G   P I T N++I+ +   G +E     
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFT-PTIITYNALINGHCILGRMEDASGL 435

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    G   D+ + + +   + R    +K   +   M  +   P V TY+ +I+   K
Sbjct: 436 LQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              + ++ + F++M   G+ P+ +TY SL++AY   G + K   +  ++       D   
Sbjct: 496 QRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           +N +I+ + +    ++   L L +     VP+ IT+ T+I   N L    A
Sbjct: 556 YNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSA 606



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 142/324 (43%), Gaps = 23/324 (7%)

Query: 125 GKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G C   + E AS L + M+  G  P V  Y+ ++S + ++  L++AF    +M  K +S 
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS- 480

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             PDV TYS LI+   K  R   +  +  EM  LG+    VTY ++I+ Y      ++  
Sbjct: 481 --PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY----------NEFNLMGVKAD 290
                M++ G   PDI T N +I+ +      ++ ++            NE     +  +
Sbjct: 539 RLHDEMIQKG-FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN 597

Query: 291 IQTLNI-----LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
              L       L K +   G+ ++   V++ M ++ +      YN++I    K G+IEK 
Sbjct: 598 CNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              +K+M H G  P+S+T  +L  +    G  ++++ +L     S  I +      +I  
Sbjct: 658 YNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGI 717

Query: 406 YGQAGDVEKMGELFLTMKERHCVP 429
             + G+++ +  +   M     +P
Sbjct: 718 NSKEGNMDAVFNVLKDMALSGLLP 741



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 25/257 (9%)

Query: 125 GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G CKQ     +  LF+ MLS GL P    YT+L++AY   G LD+A    ++M  K  S 
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS- 550

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------------ 228
             PD+ TY++LI    K  R    +++L ++ Y     + +TYNT+ID            
Sbjct: 551 --PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALA 608

Query: 229 ---GYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
              G+       E +    +M++ G   + +++  N +I  +   GNIEK    Y E   
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVY--NVIIHGHSKVGNIEKAYNLYKEMLH 666

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G      T+  L KS    G   ++  ++D+  K           ++I    K G+++ 
Sbjct: 667 SGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDA 726

Query: 345 MEEYFKKMKHRGMKPNS 361
           +    K M   G+ P S
Sbjct: 727 VFNVLKDMALSGLLPYS 743


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 2/276 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V  Y++ +K   K    D  EK+  EM   G++   VT++TII         ++    F
Sbjct: 180 EVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKAVEWF 239

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             M    GC PD  T + MI +YG +G+I+     Y+       + +  T + L K YG 
Sbjct: 240 EKM-PLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGV 298

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           AG YD   +V + M+     P +V YN +++  G+A    +    +K+M +  + PN  T
Sbjct: 299 AGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRAT 358

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y SL+ AY +A        + R++   ++ L+T  +N +++     G  +   E+F  MK
Sbjct: 359 YASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMK 418

Query: 424 ERH-CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
               C PD+ TF+++I  Y+  G    A+ + N+MI
Sbjct: 419 SSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMI 454



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 4/292 (1%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           KPD  T+S +I      +  D   +   +M   G E   VTY+ +ID YGKA   +   +
Sbjct: 213 KPDNVTFSTIISCARSCYLPDKAVEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALN 272

Query: 242 SFS-AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
            +  A  E     P  F+  ++I  YG +GN +     Y E   +GVK ++   N L  +
Sbjct: 273 LYDRARTEKWRIEPATFS--TLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDA 330

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
            GRA    + R++   M      P   TY  ++  +G+A   E     +++M+ + M  N
Sbjct: 331 MGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLN 390

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 419
           +  Y SL++  +  G       I   +++SD    D+  F+ +I+ Y  +G V +   + 
Sbjct: 391 THLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMM 450

Query: 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471
             M E    P      +++Q Y     T+      N+++ M      +   C
Sbjct: 451 NEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGC 502



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 5/331 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K K    A K+FG + Q+   +    TF+ ++     C  P++A   FE M   G +P  
Sbjct: 193 KCKDLDGAEKVFGEMLQRG-VKPDNVTFSTIISCARSCYLPDKAVEWFEKMPLFGCEPDD 251

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             Y+ ++ +YG++G +D A + + D       + +  T+S LIK       +D    +  
Sbjct: 252 VTYSVMIDSYGKAGDIDMALN-LYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYE 310

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM  LG++ + V YNT++D  G+AK+  +  + +  M+ +    P+  T  S++ AYG +
Sbjct: 311 EMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMI-NNDILPNRATYASLLHAYGRA 369

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVT 328
              E     Y E     +  +    N L       G  D    + + M+      P   T
Sbjct: 370 RFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWT 429

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           ++ +I  +  +G + + E    +M   G +P      SLV  Y KA     V     Q+ 
Sbjct: 430 FSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLL 489

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELF 419
           +  +  D  F  C+++   Q    E++G+L 
Sbjct: 490 DMGIEPDDRFCGCLLNVMTQTPK-EELGKLI 519


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 4/315 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G++PSV+ Y+  ++A  + G   EA   + +M+   + K DV  YS  I +C    R+  
Sbjct: 5   GIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQE 64

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
              IL++M  +G+  + ++ N  I  +G+A +++   S    M ++G   PD  + N+ I
Sbjct: 65  AVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAG-LSPDAISYNTAI 123

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN--ILTKSYGRAGMYDKMRSVMDFMQKRF 321
           SA G +G  E+ ++  +E + +G++  + T N  I   + G  G + +  +++  M    
Sbjct: 124 SALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAG 183

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P  +TYN +I   GK G  ++     K MK +G+  + I Y + +SA  +AG      
Sbjct: 184 VTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSV 243

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +L + ++  +  D   +   ++A   A   +K   L   M      PD   F ++I A 
Sbjct: 244 GLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAAL 303

Query: 442 NALGM-TEAAQNLEN 455
              G  T+A + LE+
Sbjct: 304 GHDGQWTQAVEILES 318



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 152/337 (45%), Gaps = 16/337 (4%)

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
           LL E+   D +K  V  Y+A ++A    G   EA + ++DM +V   +P+V + +  IK+
Sbjct: 32  LLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVG-VRPNVISCNAAIKA 90

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 254
             +  ++     IL  MS  G+   A++YNT I   G A + E+ +   S M   G   P
Sbjct: 91  WGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRLG-IEP 149

Query: 255 DIFTLNSMISAY--GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 312
            + T NS I+A   G  G   +        +L GV  D  T N L  + G+ G + +  S
Sbjct: 150 TVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALS 209

Query: 313 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372
           V+  M+K+     ++ Y+  I   G+AG  E       + K  G+ P+ + Y + V+A +
Sbjct: 210 VLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACA 269

Query: 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432
            A    K   +L+++ ++ +  D   F  +I+A G  G   +  E+  +M  +   P N 
Sbjct: 270 DANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILESMP-KMGAPRNA 328

Query: 433 TFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 469
                   YNAL  + A     N  +A  E  G  L+
Sbjct: 329 MV------YNALITSWA-----NAEVAKGEEEGGALL 354



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 151/351 (43%), Gaps = 11/351 (3%)

Query: 79  KPVLEA----LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134
           +P +E+    L    K  +WQ AL +   + +    +     ++  +       + ++A 
Sbjct: 7   RPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAV 66

Query: 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 194
            +   M + G++P+V    A + A+G++G    A S +  M S +   PD  +Y+  I +
Sbjct: 67  AILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGM-SKAGLSPDAISYNTAISA 125

Query: 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES-SFSAMVESGGCH 253
                + +  +++++EMS LGIE + VTYN+ I    +    +  ++ +    +   G  
Sbjct: 126 LGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVT 185

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           PD  T NS+I A G  G  ++           G+  DI   +    + G AG ++    +
Sbjct: 186 PDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGL 245

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +   +     P +V Y   +     A   +K     K+M   G++P++  + SL++A   
Sbjct: 246 LAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGH 305

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA----GDVEKMGELFL 420
            G   +   IL  +       +   +N +I+++  A    G+ E+ G L L
Sbjct: 306 DGQWTQAVEILESMPKMGAPRNAMVYNALITSWANAEVAKGE-EEGGALLL 355



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 2/240 (0%)

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M  LGI  S  +Y+  +    K  +++E       M E      D+   ++ I+A  N G
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
             ++     ++   +GV+ ++ + N   K++G AG +    S++  M K    P  ++YN
Sbjct: 61  RWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYN 120

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK--AGLIMKVDSILRQVE 388
             I   G AG  E+ +E   +M   G++P  +TY S ++A ++   G   +  ++++ + 
Sbjct: 121 TAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMS 180

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            + V  D+  +N +I A G+ G  ++   +   MK++    D I ++  I A    G  E
Sbjct: 181 LAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWE 240



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 10/279 (3%)

Query: 75  NLWPKPVLEALDEAIKQ----KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP 130
           N+  +P + + + AIK      +WQ AL I   + +         ++   +  LG   Q 
Sbjct: 74  NVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAG-LSPDAISYNTAISALGVAGQS 132

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAY--GQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           EQA  L   M   G++P+V  Y + ++A   G  G   +A + +  M S++   PD  TY
Sbjct: 133 EQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHM-SLAGVTPDSITY 191

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + LI +C K  ++     +L  M   G+ C  + Y+  I   G+A ++E       A  +
Sbjct: 192 NSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWE-YSVGLLAEAK 250

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S G  PD+    + ++A  ++   +K      E    G++ D      L  + G  G + 
Sbjct: 251 SLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWT 310

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           +   +++ M K       + YN +I ++  A  + K EE
Sbjct: 311 QAVEILESMPKMGAPRNAMVYNALITSWANA-EVAKGEE 348


>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 504

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 148/302 (49%), Gaps = 2/302 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M  DG+  +   YT L+ AY ++G L++++  + +M+     + D   YS+L++      
Sbjct: 149 MADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWG-IRLDTAGYSMLVRLYRDNG 207

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
            +     ++ EM  +G+E     Y+ +ID +GK  +  +    F  M  + G  PDI T 
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKM-RAEGVRPDISTW 266

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N++I  +   GN+++  +++      G+  D +   ++    G  G +D+++ + D M  
Sbjct: 267 NALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNN 326

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
           R F  +   Y I+++ +G+ GH    ++    ++    +     +C + +AY++ GL  +
Sbjct: 327 RGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQGLCEQ 386

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++L+ +E      +    N +I+A+G AG   +   +F  +K+    PD +T+ T+++
Sbjct: 387 TVNVLQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMK 446

Query: 440 AY 441
            +
Sbjct: 447 TF 448



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 41/283 (14%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           + ++ L+   GK  Q   A  +F+ M ++G++P +  + AL+  + + G +  A      
Sbjct: 229 KIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTS 288

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+      PD   + ++I    +  ++D I+K+   M+  G + S   Y  ++D YG+  
Sbjct: 289 MQE-EGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYG 347

Query: 235 KFEEMESSFSAM-VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            F + +   +A+  E+    P +F +  + +AY   G  E                  QT
Sbjct: 348 HFRDAQDCIAALRAENTQLLPRVFCV--IANAYAQQGLCE------------------QT 387

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKM 352
           +N+L                   M++  F P +V  N +I  FG AG H+E +   F+ +
Sbjct: 388 VNVLQ-----------------LMEEEGFEPNLVMLNSLINAFGTAGRHLEALA-VFQHI 429

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           K  GM P+ +TY +L+  + +A    KV  + R++E +    D
Sbjct: 430 KDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAPD 472



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           L  +   + DM++ S  +P    Y+ LI++ ++  R    E +L EM  LG    A  YN
Sbjct: 69  LARSLGLLADMQA-SGGRPSGSAYARLIRALSRAGRALEAEALLLEMRRLGPRPEAAHYN 127

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY--NEF 282
            +++G   A      +     M + G    +  T   ++ AY  +G +E  + W+   E 
Sbjct: 128 ALLEGLLAAAHLRLADLLLLQMADDG-VARNRRTYTLLLGAYARAGRLE--DSWWVLGEM 184

Query: 283 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342
              G++ D    ++L + Y   GM+ K   ++  MQ+      V  Y+ +I+TFGK G +
Sbjct: 185 RRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQL 244

Query: 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402
                 F KM+  G++P+  T+ +L+  + + G + +       ++   +  D   F  I
Sbjct: 245 ADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMI 304

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
           IS  G+ G  +++ +LF  M  R        +A ++  Y   G    AQ+
Sbjct: 305 ISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQD 354



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 5/202 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+ F  ++++  Y    + F  ++  LG+  + ++   LF+ M + G K S  VY  LV
Sbjct: 282 ALRFFTSMQEEGMYPD-PKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILV 340

Query: 157 SAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
             YGQ G   +A   I  +++  +   P V+   ++  +  +    +    +L  M   G
Sbjct: 341 DIYGQYGHFRDAQDCIAALRAENTQLLPRVFC--VIANAYAQQGLCEQTVNVLQLMEEEG 398

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
            E + V  N++I+ +G A +  E  + F  + +SG   PD+ T  +++  +  +   EK+
Sbjct: 399 FEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSG-MSPDVVTYTTLMKTFMRAKKFEKV 457

Query: 276 EKWYNEFNLMGVKADIQTLNIL 297
            + Y E    G   D +   +L
Sbjct: 458 SEVYREMERAGCAPDRKAREML 479



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%)

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L ++  RAG   +  +++  M++    P    YN ++E    A H+   +    +M   G
Sbjct: 94  LIRALSRAGRALEAEALLLEMRRLGPRPEAAHYNALLEGLLAAAHLRLADLLLLQMADDG 153

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           +  N  TY  L+ AY++AG +     +L ++    + LDT  ++ ++  Y   G  +K  
Sbjct: 154 VARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKAT 213

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           +L + M+E     D   ++ +I  +   G    A+ + +KM A
Sbjct: 214 DLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRA 256


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 161/344 (46%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TF  L+  L    +  +A +L   M+ +G +P+V  Y ++V+   +SG    A 
Sbjct: 131 YEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLAL 190

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +  M    + K DV+TYS +I S  +    D    +  EM   GI+ S VTYN+++ G
Sbjct: 191 DLLRKMDE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGG 249

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             KA K+ +       M  S    P++ T N +I  +   G +++  + Y E    G+  
Sbjct: 250 LCKAGKWNDGVQLLKDMT-SRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISP 308

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +  T N L   Y       +  +++D M +    P +VT+  +I+ + K   +++  + F
Sbjct: 309 NTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLF 368

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           +K+  RG+  N++TY  LV  + ++G +   + + +++ +  V+ D   +  ++      
Sbjct: 369 RKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDN 428

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK  E+F  +++     D + +  +I+     G  E A NL
Sbjct: 429 GKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNL 472



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 39/358 (10%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+      +   FT   ++   C+    + A  LF+ M + G+K S+  Y +LV    
Sbjct: 192 LLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLC 251

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G  ++    + DM S     P+V T+++LI    K  +     ++  EM   GI  + 
Sbjct: 252 KAGKWNDGVQLLKDMTS-RKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNT 310

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG------------- 267
           +TYN+++DGY    +  E  +    MV +  C PDI T  S+I  Y              
Sbjct: 311 ITYNSLMDGYCMQNRLSEANNMLDLMVRNN-CSPDIVTFTSLIKGYCKVKRVDEGMKLFR 369

Query: 268 ----------------------NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
                                  SG +E  E+ + E   +GV  D+ T  IL       G
Sbjct: 370 KISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNG 429

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             +K   + + +QK      +V Y I+IE   K G +E     F  +  +G+KPN +TY 
Sbjct: 430 KLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 489

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
            ++S   K G + + + +LR++E      +   +N +I A+ + GD+    +L   MK
Sbjct: 490 VMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 547



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 148/312 (47%), Gaps = 36/312 (11%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++YT +I+I    +  +      +L ++  LG E    T+NT+I+G     K  E     
Sbjct: 99  NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLV 158

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------- 277
           + MVE+G C P++ T NS+++    SG+       + KM++                   
Sbjct: 159 ARMVENG-CQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCR 217

Query: 278 ---------WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
                     + E    G+K+ + T N L     +AG ++    ++  M  R   P V+T
Sbjct: 218 DGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVIT 277

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           +N++I+ F K G +++  E +K+M  +G+ PN+ITY SL+  Y     + + +++L  + 
Sbjct: 278 FNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMV 337

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            ++   D   F  +I  Y +   V++  +LF  + +R  V + +T++ ++Q +   G  E
Sbjct: 338 RNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLE 397

Query: 449 AAQNLENKMIAM 460
            A+ L  +M+++
Sbjct: 398 IAEELFQEMVSL 409



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 80/185 (43%)

Query: 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313
           P +   +   S   ++     +  +  +  L G+  +I TLNI+   + R        SV
Sbjct: 63  PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 122

Query: 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
           +  + K  + P   T+N +I        + +      +M   G +PN +TY S+V+   K
Sbjct: 123 LGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICK 182

Query: 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 433
           +G       +LR+++  +V  D   ++ II +  + G ++    LF  M+ +      +T
Sbjct: 183 SGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVT 242

Query: 434 FATMI 438
           + +++
Sbjct: 243 YNSLV 247


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 164/346 (47%), Gaps = 5/346 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD--VYTALVSAYGQSGLLDEAFSTIN 173
           T+  L+    K  + ++AS+L + M + G    ++   Y  ++S   + G L+ A   ++
Sbjct: 245 TYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVD 304

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M+     K   +TY+ LI +  +      +E +  EM   GI  + VTYN II G  K+
Sbjct: 305 SMRLSK--KASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKS 362

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
           ++ E  +  F+ M  + G  PD+ T NSM++ Y  +GN+++      +    G+   + T
Sbjct: 363 EQVEAAQLKFAEM-RAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLT 421

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L   Y R G  ++ R + + M ++  FP V TY I++    K  ++    E+F +M 
Sbjct: 422 YNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEML 481

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
            +G++P+   Y + + A    G   K   +   +    +  DT  +N II    + G+++
Sbjct: 482 SKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLK 541

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              +L + M      PD IT+  +I A+   G+   A+ L N M++
Sbjct: 542 DAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVS 587



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 2/278 (0%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDV   + +++      R+D +  +  EM  L IE + VTYNT++D + K  + +E    
Sbjct: 206 PDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASML 265

Query: 243 FSAM-VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
              M  + GGC  +  T N +IS     G++E   K  +   L   KA   T N L  + 
Sbjct: 266 LKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRL-SKKASSFTYNPLITAL 324

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              G   K+ ++   M+     PT+VTYN +I    K+  +E  +  F +M+  G+ P+ 
Sbjct: 325 LERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDL 384

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           ITY S+++ Y KAG + +   +L  +  + +      +N +I  Y + G +E+   L   
Sbjct: 385 ITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEE 444

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           M E+ C PD  T+  ++   + +     A+   ++M++
Sbjct: 445 MVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLS 482



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 177/437 (40%), Gaps = 41/437 (9%)

Query: 58  EFAIKNIEKKVSSKKYKNLWPKPVLEAL-DEAIKQKKWQLALKIFGLLRQQQWYQARCQT 116
           E A K ++    SKK  +    P++ AL +    QK   L +++     + +       T
Sbjct: 297 ENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEM-----ENEGIMPTLVT 351

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  ++  L K +Q E A L F  M + GL P +  Y ++++ Y ++G L EA   + D++
Sbjct: 352 YNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLR 411

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             +   P V TY+ LI    +    +   ++  EM   G      TY  +++G  K +  
Sbjct: 412 R-AGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNL 470

Query: 237 EEMESSFSAMVESG----------------------------------GCHPDIFTLNSM 262
                 F  M+  G                                  G +PD  T N +
Sbjct: 471 PMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVI 530

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I     +GN++  +    +    G++ D  T   L  ++   G+  + R +++ M     
Sbjct: 531 IDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGL 590

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P+VVTY I+I T  + G++     +F+KM   G++PN ITY  L+ A  + G  +    
Sbjct: 591 QPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYH 650

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
              ++    +  +   +  +I    + G+      L+  M +    PD  T   + + ++
Sbjct: 651 HFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFD 710

Query: 443 ALGMTEAAQNLENKMIA 459
              M  A + LEN ++ 
Sbjct: 711 KGHMYHAIEYLENIVLG 727



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
           +V   G  PD+   N ++    ++   + +   Y E   + ++  I T N L  S+ + G
Sbjct: 198 VVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEG 257

Query: 306 MYDKMRSVMDFM--QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
             D+   ++  M  Q        VTYN+VI    + GH+E   +    M+    K +S T
Sbjct: 258 RKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMR-LSKKASSFT 316

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  L++A  + G + KV+++  ++EN  ++     +N II    ++  VE     F  M+
Sbjct: 317 YNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMR 376

Query: 424 ERHCVPDNITFATMIQAYNALG 445
               +PD IT+ +M+  Y   G
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAG 398


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 181/401 (45%), Gaps = 50/401 (12%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           KKW L L           Y  RC     L+    + +  ++A  ++  M S G +  +  
Sbjct: 231 KKWDLRLNA---------YTYRC-----LLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFA 276

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  L+ A  +   LD ++    DMK +  C PD YTY+I+I+   K  R +    +  EM
Sbjct: 277 YNMLLDALAKDEQLDRSYKVFKDMK-LKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEM 335

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT----LNSMISAYG 267
              G   + + YNT+I    K+   ++    F  M+++  C P+ FT    LN ++ A G
Sbjct: 336 LTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNN-CRPNEFTYSIILNVLV-AEG 393

Query: 268 NSGNIEKMEKWYNEFNLMGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
             G ++++ +  N+F    + A  ++TL+ L  S     ++  M S  D   +  +   +
Sbjct: 394 QLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISML 453

Query: 327 ----------------------------VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                                       + YN V+ T GK   +  + + ++KMK  G  
Sbjct: 454 ESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPF 513

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+  TY  L+S+  + G + +   +  ++E+SD   D   +N +I+  G+ GDV++    
Sbjct: 514 PDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMR 573

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           FL M+++   PD +T++T+I+ +      E A++L ++MI 
Sbjct: 574 FLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMIT 614



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 173/387 (44%), Gaps = 39/387 (10%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD   K ++   + K+F  ++ +        T+T ++ M GK  + E++  LFE ML+ G
Sbjct: 281 LDALAKDEQLDRSYKVFKDMKLKHCNPDE-YTYTIMIRMTGKMGRAEESLALFEEMLTKG 339

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI------------ 192
             P++  Y  ++ A  +SG++D+A     +M   ++C+P+ +TYSI++            
Sbjct: 340 CTPNLIAYNTMIQALSKSGMVDKAILLFCNMIK-NNCRPNEFTYSIILNVLVAEGQLGRL 398

Query: 193 ----KSCTKFHRFDLIEKILAEMSYLG-------IECSAVTYNTIIDGYGKAKKFEEMES 241
               +   KF    +   ++  +S LG       + C+  +++   DG  +      +ES
Sbjct: 399 DEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFH---DGGDRDAYISMLES 455

Query: 242 -----------SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
                         + V   G   D    N+++S  G    +  +   Y +    G   D
Sbjct: 456 LCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPD 515

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           I T NIL  S GR G   +   V + ++     P +++YN +I   GK G +++    F 
Sbjct: 516 IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFL 575

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M+ +G+ P+ +TY +L+  + K   +    S+  ++       +   +N ++    +AG
Sbjct: 576 EMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAG 635

Query: 411 DVEKMGELFLTMKERHCVPDNITFATM 437
              +  +L+  ++E+   PD+IT+A +
Sbjct: 636 RTAETVDLYAKLREQGLTPDSITYAIL 662



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 2/183 (1%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  ++  LGK KQ      L+E M  DG  P +  Y  L+S+ G+ G + EA     +++
Sbjct: 484 YNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELE 543

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           S SDCKPD+ +Y+ LI    K    D       EM   G+    VTY+T+I+ +GK  K 
Sbjct: 544 S-SDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKV 602

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E   S F  M+  G C P+I T N ++     +G   +    Y +    G+  D  T  I
Sbjct: 603 EMARSLFDRMITQGCC-PNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAI 661

Query: 297 LTK 299
           L +
Sbjct: 662 LDR 664



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 122/275 (44%), Gaps = 11/275 (4%)

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           + T +ILIK  +     +L   ++ +     +  +A TY  ++  + +++   + + +F+
Sbjct: 207 ISTVNILIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCLLQAHIRSR---DSDRAFN 260

Query: 245 AMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
             +E  S G   DIF  N ++ A      +++  K + +  L     D  T  I+ +  G
Sbjct: 261 VYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTG 320

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G  ++  ++ + M  +   P ++ YN +I+   K+G ++K    F  M     +PN  
Sbjct: 321 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEF 380

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  +++     G + ++D +L   E S+  ++   +  ++    + G   +   LF  M
Sbjct: 381 TYSIILNVLVAEGQLGRLDEVL---EVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM 437

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              H   D   + +M+++    G T  A  L +K+
Sbjct: 438 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKV 472



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           D++R ++  M +     T+ T NI+I+ F     +E      KK     ++ N+ TY  L
Sbjct: 189 DQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCL 245

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           + A+ ++    +  ++  ++ +    LD   +N ++ A  +   +++  ++F  MK +HC
Sbjct: 246 LQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHC 305

Query: 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            PD  T+  MI+    +G  E +  L  +M+ 
Sbjct: 306 NPDEYTYTIMIRMTGKMGRAEESLALFEEMLT 337



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 38/203 (18%)

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I T+N +I  + ++ ++E       +++L   + +  T   L +++ R+   D+  +V  
Sbjct: 207 ISTVNILIKIFSSNEDLELCTGLIKKWDL---RLNAYTYRCLLQAHIRSRDSDRAFNVYM 263

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M  + +   +  YN++++   K   +++  + FK MK +   P+  TY           
Sbjct: 264 EMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTY----------- 312

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                                     +I   G+ G  E+   LF  M  + C P+ I + 
Sbjct: 313 ------------------------TIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYN 348

Query: 436 TMIQAYNALGMTEAAQNLENKMI 458
           TMIQA +  GM + A  L   MI
Sbjct: 349 TMIQALSKSGMVDKAILLFCNMI 371


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 162/344 (47%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TF  L+  L    +  +A +L + M+ +G +P +  Y ++V+   +SG    AF
Sbjct: 154 YEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAF 213

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +  M+   + K DV+TYS +I S  +    D    +  EM   GI+ S VTYN+++ G
Sbjct: 214 DMLRKMEE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             KA K+ +       MV S    P++ T N ++  +   G +++  + Y E    G+  
Sbjct: 273 LCKAGKWNDGALLLKDMV-SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I T N L   Y       +  +++D M +    P +VT+  +I+ +     ++   + F
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           + +  RG+  N++TY  LV  + ++G I   + + +++ +  V+ D   +  ++      
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDN 451

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK  E+F  +++       + + T+I+     G  E A NL
Sbjct: 452 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 155/360 (43%), Gaps = 39/360 (10%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F +LR+ +    +   FT   ++   C+    + A  LF+ M + G+K SV  Y +LV  
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
             ++G  ++    + DM S  +  P+V T+++L+    K  +     ++  EM   GI  
Sbjct: 273 LCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG----------- 267
           + +TYNT++DGY    +  E  +    MV +  C PDI T  S+I  Y            
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIKGYCMVKRVDDGMKV 390

Query: 268 ------------------------NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
                                    SG I+  E+ + E    GV  D+ T  IL      
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G  +K   + + +QK      +V Y  +IE   K G +E     F  +  +G+KPN +T
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           Y  ++S   K G + + + +LR++E      +   +N +I A+ + GD+    +L   MK
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 143/311 (45%), Gaps = 36/311 (11%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           ++YT +I+I    +  +      +L ++  LG E    T+NT+I+G     K  +     
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLV 181

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------- 277
             MVE+G C PD+ T NS+++    SG+       + KME+                   
Sbjct: 182 DRMVENG-CQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCR 240

Query: 278 ---------WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
                     + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T
Sbjct: 241 DGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           +N++++ F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  + 
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            +    D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  +
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIK 420

Query: 449 AAQNLENKMIA 459
            A+ L  +M++
Sbjct: 421 LAEELFQEMVS 431



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 130/283 (45%), Gaps = 9/283 (3%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P +  +S    +  +  +F+L+     ++   GI  +  T N +I+ + +  K     S 
Sbjct: 86  PGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              +++ G   PD  T N++I+     G + K     +     G + D+ T N +     
Sbjct: 146 LGKVMKLGY-EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGIC 204

Query: 303 RAG----MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
           R+G     +D +R     M++R     V TY+ +I++  + G I+     FK+M+ +G+K
Sbjct: 205 RSGDTSLAFDMLRK----MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            + +TY SLV    KAG       +L+ + + +++ +   FN ++  + + G +++  EL
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           +  M  R   P+ IT+ T++  Y        A N+ + M+  K
Sbjct: 321 YKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 4/321 (1%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196
           F  M+  G +P V  YT L++   ++G + +A    N M   S   PD    + L+    
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIR-SGVSPDNKACAALVVGLC 195

Query: 197 KFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
              + DL  +++AE +    ++ S V YN +I G+ KA + E+ E+  S M + G C PD
Sbjct: 196 HARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIG-CEPD 254

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T N +++ Y ++  +++ E    E    G++ D  + N L K + R    D+  S M 
Sbjct: 255 LVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFML 314

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
              +   F  VV+Y+ +IETF +A + +K  + F++M+ +G+  N +T+ SL+ A+ + G
Sbjct: 315 KEMEPRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREG 374

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
                  +L Q+    +  D  F+  I+    ++G+V+K   +F  M E    PD I++ 
Sbjct: 375 NSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYN 434

Query: 436 TMIQAYNALG-MTEAAQNLEN 455
           ++I      G +TEA +  E+
Sbjct: 435 SLISGLCRSGRVTEAIKLFED 455



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 122 VMLGKCKQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           +++G C    +  L +E++     S  +K S+ VY AL+S + ++G +++A +  + M  
Sbjct: 190 LVVGLC-HARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSK 248

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
           +  C+PD+ TY++L+      +     E ++ EM   GI+  A +YN ++  + +    +
Sbjct: 249 IG-CEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPD 307

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
              S     +E  G   D+ + +++I  +  + N +K  K + E    G+  ++ T   L
Sbjct: 308 RCYSFMLKEMEPRG-FCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSL 366

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            K++ R G     + ++D M +    P  + Y  +++   K+G+++K    F  M    +
Sbjct: 367 IKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEI 426

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P++I+Y SL+S   ++G + +   +   ++  +   D   F  II    +   +    +
Sbjct: 427 TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYK 486

Query: 418 LFLTMKERHCVPDNITFATMIQA 440
           ++  M ++    D     T+I+A
Sbjct: 487 VWDQMMDKGFTLDRDVSDTLIKA 509



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/362 (19%), Positives = 164/362 (45%), Gaps = 4/362 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+++F  +R    Y+     + + + +L K  + E A  ++  M+  G       Y+  +
Sbjct: 28  AVQVFDEMRHSS-YRVFSSDYNRFIGVLVKESRFELAEAIYRDMMPMGFSLIPFTYSRFI 86

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
           S   +    +   + + DM+++    PD++ ++I +    + ++     +    M   G 
Sbjct: 87  SGLCKVKKFELIDALLRDMETLGFI-PDIWAFNIYLDLLCRENKVGFAVQTFFCMVQRGR 145

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE-KM 275
           E   V+Y  +I+G  +A K  +    ++AM+ SG   PD     +++    ++  ++   
Sbjct: 146 EPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSG-VSPDNKACAALVVGLCHARKVDLAY 204

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
           E    E     VK  I   N L   + +AG  +K  ++  FM K    P +VTYN+++  
Sbjct: 205 EMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNY 264

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +     +++ E    +M   G++ ++ +Y  L+  + +     +  S + +        D
Sbjct: 265 YYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEMEPRGFCD 324

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              ++ +I  + +A + +K  +LF  M+++  V + +TF ++I+A+   G +  A+ L +
Sbjct: 325 VVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLD 384

Query: 456 KM 457
           +M
Sbjct: 385 QM 386



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 129/308 (41%), Gaps = 38/308 (12%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y + ++   +SG++D A    ++M+  S  +     Y+  I    K  RF+L E I  +M
Sbjct: 12  YRSRIANLVKSGMIDNAVQVFDEMRH-SSYRVFSSDYNRFIGVLVKESRFELAEAIYRDM 70

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
             +G      TY+  I G  K KKFE +++    M E+ G  PDI+  N  +        
Sbjct: 71  MPMGFSLIPFTYSRFISGLCKVKKFELIDALLRDM-ETLGFIPDIWAFNIYLDLLCRENK 129

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
                          V   +QT   + +  GR                    P VV+Y I
Sbjct: 130 ---------------VGFAVQTFFCMVQR-GRE-------------------PDVVSYTI 154

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENS 390
           +I    +AG +    E +  M   G+ P++    +LV     A  + +  + +  +++++
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSA 214

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            V L    +N +IS + +AG +EK   L   M +  C PD +T+  ++  Y    M + A
Sbjct: 215 RVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRA 274

Query: 451 QNLENKMI 458
           + +  +M+
Sbjct: 275 EGVMTEMV 282


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 159/344 (46%), Gaps = 4/344 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
              + L+++ G  K   +A  +FE M  +G +P +   T L+++  +  L D  +     
Sbjct: 137 HVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKK 196

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M  +     +++ Y++L+ +C K    +  EK+L+EM    +     TYNT+I  Y K  
Sbjct: 197 MVKLG-VVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKG 255

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
              E  S    M E  G  PDIFT NS+I  +   G + +  + + +     V  +  T 
Sbjct: 256 MHYEALSVQDRM-EMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK--DVTPNHVTY 312

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y R    D+   + + M ++  +PTV+TYN ++    + G +        +M  
Sbjct: 313 TSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSE 372

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           R ++P+++T  +L++AY K G +     +  ++  + + LD   +  +I  + +A +++K
Sbjct: 373 RKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDK 432

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             EL   M +    P   T++ ++ +Y      EA   L ++++
Sbjct: 433 AKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELV 476



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 145/350 (41%), Gaps = 12/350 (3%)

Query: 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
           A    +  L+    K    E+A  +   M    + P +  Y  L+S Y + G+  EA S 
Sbjct: 204 ANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALS- 262

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           + D   ++   PD++TY+ LI    +  R     ++  ++    +  + VTY ++IDGY 
Sbjct: 263 VQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK--DVTPNHVTYTSLIDGYC 320

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +    +E       M E G  +P + T NS++      G +       NE +   ++ D 
Sbjct: 321 RVNDLDEALRLKEVMSEKG-LYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDN 379

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L  +Y + G       V D M          TY  +I  F KA  I+K +E    
Sbjct: 380 VTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFG 439

Query: 352 MKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
           M   G  P+  TY  LV +Y K      +I   D ++R+     + +D   +  +I  + 
Sbjct: 440 MMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRR----GLCVDVSVYRALIRRFC 495

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +   ++    +   MK++    D++ + ++   Y  +G      ++ ++M
Sbjct: 496 KIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEM 545



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 4/282 (1%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G+ P +  Y +L+  + + G + EA     D+K V+   P+  TY+ LI    + +  D 
Sbjct: 271 GISPDIFTYNSLIYGFCREGRMREAVQLFRDIKDVT---PNHVTYTSLIDGYCRVNDLDE 327

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
             ++   MS  G+  + +TYN+I+    +  +  +     + M E     PD  T N++I
Sbjct: 328 ALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERK-IEPDNVTCNTLI 386

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +AY   G++    K  ++    G+K D  T   L   + +A   DK + ++  M    F 
Sbjct: 387 NAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFS 446

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P+  TY+ +++++ K  + E + +   ++  RG+  +   Y +L+  + K   I     +
Sbjct: 447 PSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRV 506

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           L  +++  +  D+  +  +   Y + G V    ++   M ++
Sbjct: 507 LGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKK 548



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 44/277 (15%)

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           YG +K   E    F  M    G  P +     ++++       + + K Y +   +GV A
Sbjct: 146 YGNSKMTHEAIQVFEHM-RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVA 204

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEY 348
           +I   N+L  +  ++G  +K   V+  M+ +  FP + TYN +I  + K G H E +   
Sbjct: 205 NIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQ 264

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             +M+  G+ P+  TY SL+  + + G + +   + R ++  DV  +   +  +I  Y +
Sbjct: 265 -DRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK--DVTPNHVTYTSLIDGYCR 321

Query: 409 AGDV-------EKMGE----------------------------LFLTMKERHCVPDNIT 433
             D+       E M E                            L   M ER   PDN+T
Sbjct: 322 VNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVT 381

Query: 434 FATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
             T+I AY  +G   +A  +++KM+     +G KL Q
Sbjct: 382 CNTLINAYCKIGDMRSALKVKDKMVG----AGLKLDQ 414



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 234 KKFEEMESSFSAMVESGGCHPDI--FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           K F   +S  S++V+     PD+    L+ ++  YGNS    +  + +    + G +  +
Sbjct: 113 KDFLSTQSVLSSLVKIHD-DPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHL 171

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
               +L  S  +  + D +  +   M K      +  YN+++    K+G +EK E+   +
Sbjct: 172 HACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSE 231

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+ + + P+  TY +L+S Y K G+  +  S+  ++E + +  D   +N +I  + + G 
Sbjct: 232 MELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGR 291

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           + +  +LF  +K+    P+++T+ ++I  Y  +   + A  L+  M
Sbjct: 292 MREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEALRLKEVM 335



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 2/265 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    +    ++A  L EVM   GL P+V  Y +++    + G L +A   +N+M
Sbjct: 311 TYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEM 370

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    +PD  T + LI +  K        K+  +M   G++    TY  +I G+ KAK+
Sbjct: 371 -SERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKE 429

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++ +     M+++G   P   T + ++ +Y    N E + K  +E    G+  D+    
Sbjct: 430 IDKAKELLFGMMDAGF-SPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYR 488

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + + +    D  + V+  M+ +  F   V Y  +   + K G +    +   +M  +
Sbjct: 489 ALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKK 548

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKV 380
            +      Y S  ++Y+    I+ +
Sbjct: 549 RLMITLKIYRSFNASYASDNSILSL 573


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 145/295 (49%), Gaps = 2/295 (0%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V  Y AL++ + +   +D+A   ++ M+S  D  PD  TY+I+I S     + DL  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRS-KDFSPDTVTYNIMIGSLCSRGKLDLAL 213

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           K+L ++     + + +TY  +I+        +E       M+ S G  PD+FT N++I  
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML-SRGLKPDMFTYNTIIRG 272

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
               G +++  +      L G + D+ + NIL ++    G +++   +M  M      P 
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VVTY+I+I T  + G IE+     K MK +G+ P++ +Y  L++A+ + G +      L 
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
            + +   + D   +N +++   + G  ++  E+F  + E  C P++ ++ TM  A
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 188/415 (45%), Gaps = 13/415 (3%)

Query: 52  SKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAI----KQKKWQLALKIFGLLRQQ 107
           +K+++  F ++NI K V   +    + +P + A +  I    K  +   A ++   +R +
Sbjct: 128 TKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK 187

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGL 164
             +     T+    +M+G      +  L  +V+   LSD  +P+V  YT L+ A    G 
Sbjct: 188 D-FSPDTVTYN---IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGG 243

Query: 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224
           +DEA   +++M S    KPD++TY+ +I+   K    D   +++  +   G E   ++YN
Sbjct: 244 VDEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYN 302

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            ++       K+EE E   + M  S  C P++ T + +I+     G IE+          
Sbjct: 303 ILLRALLNQGKWEEGEKLMTKMF-SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 361

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+  D  + + L  ++ R G  D     ++ M      P +V YN V+ T  K G  ++
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ 421

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             E F K+   G  PNS +Y ++ SA   +G  ++   ++ ++ ++ +  D   +N +IS
Sbjct: 422 ALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMIS 481

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              + G V++  EL + M+     P  +T+  ++  +      E A N+   M+ 
Sbjct: 482 CLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG 536



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 161/356 (45%), Gaps = 6/356 (1%)

Query: 105 RQQQWYQARCQTFTKLMVMLGK-CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161
           R+QQ  Q+     T+++ +  + C+     ++  L E M+  G  P V + T L+  +  
Sbjct: 77  RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136

Query: 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
              + +A   +  ++     +PDV+ Y+ LI    K +R D   ++L  M         V
Sbjct: 137 LRNIPKAVRVMEILEKFG--QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTV 194

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
           TYN +I       K +      + ++ S  C P + T   +I A    G +++  K  +E
Sbjct: 195 TYNIMIGSLCSRGKLDLALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDE 253

Query: 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
               G+K D+ T N + +   + GM D+   ++  ++ +   P V++YNI++      G 
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query: 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
            E+ E+   KM      PN +TY  L++   + G I +  ++L+ ++   +  D   ++ 
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +I+A+ + G ++   E   TM    C+PD + + T++      G  + A  +  K+
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E+   L   M S+   P+V  Y+ L++   + G ++EA + +  MK      PD Y+Y  
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGLTPDAYSYDP 373

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           LI +  +  R D+  + L  M   G     V YNT++    K  K ++    F  + E G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
            C P+  + N+M SA  +SG+  +      E    G+  D  T N +     R GM D+ 
Sbjct: 434 -CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEA 492

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             ++  M+   F P+VVTYNIV+  F KA  IE      + M   G +PN  TY  L+  
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query: 371 YSKAG 375
              AG
Sbjct: 553 IGFAG 557



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 120/278 (43%), Gaps = 2/278 (0%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
            PDV   + LIK            +++  +   G +     YN +I+G+ K  + ++   
Sbjct: 121 NPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATR 179

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
               M  S    PD  T N MI +  + G ++   K  N+      +  + T  IL ++ 
Sbjct: 180 VLDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEAT 238

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
              G  D+   +MD M  R   P + TYN +I    K G +++  E  + ++ +G +P+ 
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDV 298

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
           I+Y  L+ A    G   + + ++ ++ +     +   ++ +I+   + G +E+   L   
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           MKE+   PD  ++  +I A+   G  + A      MI+
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 1/211 (0%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G +PD+     +I  +    NI K  +        G + D+   N L   + +    D  
Sbjct: 119 GYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDA 177

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+D M+ + F P  VTYNI+I +    G ++   +   ++     +P  ITY  L+ A
Sbjct: 178 TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEA 237

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
               G + +   ++ ++ +  +  D   +N II    + G V++  E+   ++ + C PD
Sbjct: 238 TMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPD 297

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            I++  +++A    G  E  + L  KM + K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEK 328


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 173/393 (44%), Gaps = 22/393 (5%)

Query: 82  LEALDE-AIKQKKWQLALKIFGLLRQQQWYQA------------RCQTFTKLMVMLGKCK 128
           L ALDE ++    +   + I GL +     QA            + +  T   V+ G CK
Sbjct: 85  LRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCK 144

Query: 129 QP--EQASLLFEVMLSDGLK--PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
               E+A  L E M+  G K  P +  Y  L++A+ ++  + EA +    MK+ +   PD
Sbjct: 145 SGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKA-AGINPD 203

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V T +IL+    K    +   +IL  M   G     +TYN+II     A K  E      
Sbjct: 204 VLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILK 263

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M     C PD+ T N+++  +  +G + +  +   E     +  D+ T  IL     R 
Sbjct: 264 TM----SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 319

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G       +++ + ++ + P V+ Y  +++   K+G IE+  +  K+M  RG +   + Y
Sbjct: 320 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMY 379

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            SLVS Y +AG + K   IL ++ + +++     +N ++    + G + K   L   +  
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           R  VPD +T+ T+I           A +L ++M
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEM 472



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 159/347 (45%), Gaps = 11/347 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM- 175
           F  L+  L K   P+QA  LFE M S  +KP +  Y  ++S   +SG L++A   + +M 
Sbjct: 100 FNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMI 159

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGK 232
           +      PD+ TY+ LI +   F+R   I +  A   +M   GI    +T N ++ G  K
Sbjct: 160 RKGGKSAPDIVTYNTLINA---FYRASRIREACAFREKMKAAGINPDVLTCNILVSGICK 216

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
               EE       M +  G  PD+ T NS+I A   +G + +  +       M    D+ 
Sbjct: 217 DGDVEEALEILDGM-KLAGPVPDVITYNSIIHALCVAGKVVEAAEI---LKTMSCSPDLV 272

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L   + +AGM  +   V++ M +    P V+TY I++    + G ++      +++
Sbjct: 273 TFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEI 332

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             +G  P+ I Y SLV    K+G I +   +++++           ++ ++S Y +AG+V
Sbjct: 333 VRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNV 392

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            K  E+   M   + VP   T+  ++      G    A +L + ++A
Sbjct: 393 HKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 171/404 (42%), Gaps = 34/404 (8%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +  +  LA++ F    +Q  Y+    ++  L+ +L K     +   +++ +L  G  P++
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNL 62

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
             +  L+    ++G    A   +  +   S   PDVY +++LI    K    D   K+  
Sbjct: 63  VTFKILIRGNCKAGQAMRALEFLRALDEFS-VAPDVYIFNVLIHGLFKDGNPDQAVKLFE 121

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGN 268
            M    ++   VTYNT+I G  K+   E+       M+  GG   PDI T N++I+A+  
Sbjct: 122 NMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYR 181

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
           +  I +   +  +    G+  D+ T NIL     + G  ++   ++D M+     P V+T
Sbjct: 182 ASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVIT 241

Query: 329 Y--------------------------------NIVIETFGKAGHIEKMEEYFKKMKHRG 356
           Y                                N +++ F KAG + +  E  ++M    
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 301

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ ITY  LV+   + G +     +L ++     I D   +  ++    ++G++E+  
Sbjct: 302 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +L   M  R C    + +++++  Y   G    A+ +  +M+++
Sbjct: 362 KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSI 405



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 131/318 (41%), Gaps = 7/318 (2%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK    E+A  + + M   G  P V  Y +++ A   +G + EA   +  M     C 
Sbjct: 213 GICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS----CS 268

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PD+ T++ L+    K        ++L EM    I    +TY  +++G  +  + +     
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              +V  G   PD+    S++     SG IE+  K   E ++ G +  +   + L   Y 
Sbjct: 329 LEEIVRQGYI-PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           RAG   K R ++  M      P + TYNIV+    K G I K       +  RG  P+ +
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY +L+    KA  + +   +  ++ +     +      ++    + G V+    L + M
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 507

Query: 423 KERHCVPDNITFATMIQA 440
             +   P+ + + ++I  
Sbjct: 508 SRKRHAPNVVVYTSLIDG 525



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 132/325 (40%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    K     +A  + E M  + + P V  YT LV+   + G +  AF  + ++
Sbjct: 273 TFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEI 332

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV  Y+ L+    K    +   K++ EMS  G     V Y++++ GY +A  
Sbjct: 333 VR-QGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGN 391

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +     + MV S    P +FT N ++      G+I K     ++    G   D+ T N
Sbjct: 392 VHKAREILAEMV-SINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYN 450

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +A    +   + D M  R  FP  VT   V+    + G ++       +M  +
Sbjct: 451 TLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRK 510

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN + Y SL+    K+  +     +L  +    V LD   +  +I +    G V + 
Sbjct: 511 RHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEA 570

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
             ++  M  R  +PD  T  T+ +A
Sbjct: 571 MAMYDEMVARGFLPDGSTSKTLEEA 595



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 2/257 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +Q Y      +T L+  L K  + E+A  L + M   G +  V +Y++LVS Y ++G + 
Sbjct: 334 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH 393

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A   + +M S+ +  P ++TY+I++    K         +++++   G     VTYNT+
Sbjct: 394 KAREILAEMVSI-NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTL 452

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           IDG  KA +  E     +  + S GC P+  TL S++      G ++       E +   
Sbjct: 453 IDGLCKANRVRE-ACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 511

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              ++     L     ++   D    V+D M+ +        Y  +I +    G + +  
Sbjct: 512 HAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAM 571

Query: 347 EYFKKMKHRGMKPNSIT 363
             + +M  RG  P+  T
Sbjct: 572 AMYDEMVARGFLPDGST 588



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%)

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           V +YN +++   K+GH  +  + +K + H G  PN +T+  L+    KAG  M+    LR
Sbjct: 27  VHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLR 86

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            ++   V  D   FN +I    + G+ ++  +LF  M+     P+ +T+ T+I      G
Sbjct: 87  ALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSG 146

Query: 446 MTEAAQNLENKMIAMKENSGKKLI 469
             E A+ L  +MI     S   ++
Sbjct: 147 NLEKARELLEEMIRKGGKSAPDIV 170


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 169/372 (45%), Gaps = 38/372 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           + +K  LA    G +  +  Y+    TF+ L+  L    +  +A  L + M+  G KP++
Sbjct: 119 RCRKLSLAFSAMGKI-IKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
               ALV+    +G + +A   I+ M   +  +P+  TY  ++K   K  +  L  ++L 
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVE-TGFQPNEVTYGPVLKVMCKSGQTALAMELLR 236

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M    I+  AV Y+ IIDG  K                                     
Sbjct: 237 KMEERKIKLDAVKYSIIIDGLCK------------------------------------D 260

Query: 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329
           G+++     +NE  + G KADI     L + +  AG +D    ++  M KR   P VV +
Sbjct: 261 GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           + +I+ F K G + + EE  K+M  RG+ P+++TY SL+  + K   + K + +L  + +
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
                +   FN +I+ Y +A  ++   ELF  M  R  V D +T+ T+IQ +  LG  E 
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEV 440

Query: 450 AQNLENKMIAMK 461
           A+ L  +M++ +
Sbjct: 441 AKELFQEMVSRR 452



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 153/351 (43%), Gaps = 2/351 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           +  +Q    T+  ++ ++ K  Q   A  L   M    +K     Y+ ++    + G LD
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD 264

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
            AF+  N+M+ +   K D+  Y+ LI+      R+D   K+L +M    I    V ++ +
Sbjct: 265 NAFNLFNEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           ID + K  K  E E     M++ G   PD  T  S+I  +     ++K     +     G
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRG-ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              +I+T NIL   Y +A + D    +   M  R      VTYN +I+ F + G +E  +
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F++M  R ++P+ ++Y  L+      G   K   I  ++E S + LD   +N II   
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             A  V+   +LF ++  +   PD  T+  MI      G    A  L  KM
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 171/378 (45%), Gaps = 11/378 (2%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLF 137
           PVL+ +    K  +  LA++   LLR+ +  + +       +++ G CK    + A  LF
Sbjct: 217 PVLKVM---CKSGQTALAME---LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLF 270

Query: 138 EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197
             M   G K  + +YT L+  +  +G  D+    + DM       PDV  +S LI    K
Sbjct: 271 NEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK-RKITPDVVAFSALIDCFVK 329

Query: 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
             +    E++  EM   GI    VTY ++IDG+ K  + ++       MV S GC P+I 
Sbjct: 330 EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV-SKGCGPNIR 388

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N +I+ Y  +  I+   + + + +L GV AD  T N L + +   G  +  + +   M
Sbjct: 389 TFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
             R   P +V+Y I+++     G  EK  E F+K++   M+ +   Y  ++     A  +
Sbjct: 449 VSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 508

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
                +   +    V  D   +N +I    + G + +   LF  M+E    P+  T+  +
Sbjct: 509 DDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNIL 568

Query: 438 IQAYNALG-MTEAAQNLE 454
           I+A+   G  T++A+ +E
Sbjct: 569 IRAHLGEGDATKSAKLIE 586



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 18/317 (5%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           GK ++ E+   L + M+  G+ P    YT+L+  + +   LD+A   ++ M S   C P+
Sbjct: 331 GKLREAEE---LHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS-KGCGPN 386

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           + T++ILI    K +  D   ++  +MS  G+    VTYNT+I G+ +  K E  +  F 
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            MV S    PDI +   ++    ++G  EK  + + +     ++ DI   NI+      A
Sbjct: 447 EMV-SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 505

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
              D    +   +  +   P V TYNI+I    K G + + +  F+KM+  G  PN  TY
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             L+ A+   G   K   ++ +++     +D       +S   +             +K 
Sbjct: 566 NILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLAR------------MLKA 613

Query: 425 RHCVPDNITFATMIQAY 441
            H  PD  TF T+++ +
Sbjct: 614 GH-EPDVFTFTTLLRPF 629



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 145/331 (43%), Gaps = 2/331 (0%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  LF+ M     +P +  ++ L S   ++   D        M+ +     ++YT 
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQME-LKGIAHNLYTL 110

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           SI+I  C +  +  L    + ++  LG E   VT++T+I+G     +  E       MVE
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
            G   P + TLN++++    +G +       +     G + +  T   + K   ++G   
Sbjct: 171 MGH-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
               ++  M++R      V Y+I+I+   K G ++     F +M+ +G K + I Y +L+
Sbjct: 230 LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLI 289

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
             +  AG       +LR +    +  D   F+ +I  + + G + +  EL   M +R   
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           PD +T+ ++I  +      + A ++ + M++
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 125/316 (39%), Gaps = 30/316 (9%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           L R+         T T   ++ G C+  + E A  LF+ M+S  ++P +  Y  L+    
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
            +G  ++A      ++  S  + D+  Y+I+I       + D    +   +   G++   
Sbjct: 469 DNGEPEKALEIFEKIEK-SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDV 527

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
            TYN +I G  K     E +  F  M E G   P+  T N +I A+   G+  K  K   
Sbjct: 528 KTYNIMIGGLCKKGSLSEADLLFRKMEEDGH-SPNGCTYNILIRAHLGEGDATKSAKLIE 586

Query: 281 EFNLMGVKADIQTLNILTKSYGR-------------------------AGMYDKMRSVMD 315
           E    G   D  TL     +  R                         A +YD   ++  
Sbjct: 587 EIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDA-PTLFK 645

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+   + P VVTYN VI+       I ++     +M  RG +PN++T  + +S   K  
Sbjct: 646 NMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQD 705

Query: 376 LIMKVDSILRQVENSD 391
           L      +LR++EN +
Sbjct: 706 LHGSAILLLRKMENDN 721



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 41/298 (13%)

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           D+A     +M + S  +P +  +S L     +  ++DL+  +  +M   GI  +  T + 
Sbjct: 54  DDAVDLFQEM-TRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSI 112

Query: 226 IIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283
           +I+   + +K   +  +FSAM  +   G  PD  T +++I+     G + +  +  +   
Sbjct: 113 MINCCCRCRK---LSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169

Query: 284 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343
            MG K                                   PT++T N ++      G + 
Sbjct: 170 EMGHK-----------------------------------PTLITLNALVNGLCLNGKVS 194

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
                  +M   G +PN +TY  ++    K+G       +LR++E   + LD   ++ II
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
               + G ++    LF  M+ +    D I + T+I+ +   G  +    L   MI  K
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
           +P V  Y A+V+ Y  +G LD A   + DM      +PD YTY+ LI+      R     
Sbjct: 121 EPDVMAYNAMVAGYCVTGQLDAARRLVADMPM----EPDSYTYNTLIRGLCGRGRTGNAL 176

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
            +L +M   G     VTY  +++   K   +++       M  + GC PDI T N +++ 
Sbjct: 177 VVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEM-RAKGCAPDIITYNVVVNG 235

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
               G ++   ++       G + +  + NI+ K    A  ++    +M  M ++ + P 
Sbjct: 236 ICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPN 295

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
           VVT+N++I    + G +E   E   ++   G  PNS++Y  ++ A+ K   + +  + + 
Sbjct: 296 VVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 355

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
            + +     D   +N +++A  + G+V+   EL   +K++ C P  I++ T+I      G
Sbjct: 356 LMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 415

Query: 446 MTEAAQNLENKMI 458
            T+ A  L N+M+
Sbjct: 416 KTKEALELLNEMV 428



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 157/338 (46%), Gaps = 2/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K    +QA  L + M + G  P +  Y  +V+   Q G +D+A   +  +
Sbjct: 193 TYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSL 252

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C+P+  +Y+I++K      R++  EK++AEMS  G   + VT+N +I    + + 
Sbjct: 253 PS-HGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCR-RG 310

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E        +   GC P+  + N ++ A+     +++   +       G   DI + N
Sbjct: 311 LVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYN 370

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  R G  D    ++  ++ +   P +++YN VI+   KAG  ++  E   +M  +
Sbjct: 371 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK 430

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++P+ ITY ++ S   +   I +      +V++  +  +T  +N I+    +  +    
Sbjct: 431 GLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNA 490

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            +LF+ M    C+P+  T+  +I+     G+ + A+ L
Sbjct: 491 IDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEAREL 528



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 14/329 (4%)

Query: 131 EQASLLFEVMLSDGLKPSV--DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           E+A  L E M   GL+PS       AL+     SG   EA       + ++ C+PDV  Y
Sbjct: 76  EEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEA------RRVLAACEPDVMAY 127

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + ++       + D   +++A+M    +E  + TYNT+I G     +          M+ 
Sbjct: 128 NAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLR 184

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
             GC PD+ T   ++ A       ++  K  +E    G   DI T N++     + G  D
Sbjct: 185 R-GCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVD 243

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
                +  +      P  V+YNIV++    A   E  E+   +M  +G  PN +T+  L+
Sbjct: 244 DAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLI 303

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
           S   + GL+     +L Q+       ++  +N I+ A+ +   +++       M  R C 
Sbjct: 304 SFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCY 363

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
           PD +++ T++ A    G  +AA  L +++
Sbjct: 364 PDIVSYNTLLTALCRGGEVDAAVELLHQL 392


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M S +   PD   Y  
Sbjct: 69  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEM-SATGHTPDPSAYLG 127

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++ T          +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 128 LMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 186

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 187 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 245

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 246 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 305

Query: 371 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 306 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 365

Query: 430 DNITFATMIQAYNALGMTEAAQ 451
           D  +   ++ AY   G+ + ++
Sbjct: 366 DERSLEGVLNAYCIAGVIDESK 387



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 44/306 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +MV  G+    E A  + + + ++G+ P+   YT LV A G + + +EA+   N M
Sbjct: 228 TCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMM 287

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                               T+      IE                TYN + + + K   
Sbjct: 288 --------------------TEIGSLPTIE----------------TYNALANAFAKGGL 311

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  +     D  + +++I AY     ++   K Y E        D ++L 
Sbjct: 312 FQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 371

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-H 354
            +  +Y  AG+ D+ +   + +Q     P+++ Y +++  + +        +  ++MK +
Sbjct: 372 GVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTN 431

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQA 409
           R    + +    +   Y        V+ +L    +E  D  L   FFN ++     +GQ 
Sbjct: 432 RASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQK 489

Query: 410 GDVEKM 415
           G   ++
Sbjct: 490 GRAARV 495



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V+ D+ T N L  +     + D+   ++  M +    P   +Y  +++ F  AG++ ++ 
Sbjct: 48  VRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVA 107

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           E F +M   G  P+   Y  L+ A++  G   +  ++LRQ++          +  ++  Y
Sbjct: 108 ELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLY 167

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           G+ G  + + ELF  M+     PD  T+  + + +   G
Sbjct: 168 GRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGG 205



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 324 PTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHR---GMKPNSITYCSLVSAYSKAGL 376
           PT  TYN V+    +A       + +   F +M+H     ++P+  TY +L++A +   L
Sbjct: 8   PTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRAL 67

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
             + + +LR +  + V+ DT  +  I+ A+  AG++ ++ ELF  M      PD   +  
Sbjct: 68  SDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLG 127

Query: 437 MIQAYNALGMTEAAQNLENKMIA 459
           +++A+  +G T  A  +  +M A
Sbjct: 128 LMEAHTLVGATAEAVAVLRQMQA 150



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            + +T L+  LG     E+A + F +M   G  P+++ Y AL +A+ + GL  EA +  +
Sbjct: 261 AKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFS 320

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M + +  + D  ++  LI++  +  + D   K   EM          +   +++ Y  A
Sbjct: 321 RMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIA 380

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
              +E +  F  + +S    P I     M+S Y       + ++W + ++L+
Sbjct: 381 GVIDESKEQFEEL-QSMVTVPSIIAYCMMLSLYA------RNDRWTDAYDLL 425


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 146/363 (40%), Gaps = 36/363 (9%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  + E +   GL P+V  YT LV  Y + G ++EA   + +MK   D   D   Y +
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGM 329

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    +  R D   ++  EM   GI  +   YNT+I+G  K  + EE++     M E  
Sbjct: 330 MINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM-EDV 388

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD ++ N++I  Y   G++ K  +        G+ A   T N L K +      D  
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 311 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 335
             +   M KR   P                                    V+T+N VI  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G + + EE   +MK     P+S+TY +L   Y K G +     ++ ++E+      
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FN  I+ +  A    K+ ++   M  R   P+ +T+  +I  +   G    A NL  
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 456 KMI 458
           +M+
Sbjct: 629 EMV 631



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 158/378 (41%), Gaps = 36/378 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++  +L+  L +   P  A++++  M   G+ P       +  AY + G + +A   + +
Sbjct: 184 RSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEE 243

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+ +   + ++  Y  ++         +   +IL  +   G+  + VTY  ++ GY K  
Sbjct: 244 MEGMG-LEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDG 302

Query: 235 KFEEMESSFSAMVESG-----------------------------------GCHPDIFTL 259
           + EE E     M E+G                                   G H ++F  
Sbjct: 303 RMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVY 362

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+MI+     G +E+++K   E   +G++ D  + N L   Y R G   K   +   M +
Sbjct: 363 NTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVR 422

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                T +TYN +++ F     I+     +  M  RG+ PN I+  +L+    KAG   +
Sbjct: 423 NGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQ 482

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++ ++     +  +   FN +I+   + G + +  EL   MKE  C PD++T+ T+  
Sbjct: 483 ALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFD 542

Query: 440 AYNALGMTEAAQNLENKM 457
            Y  LG    A +L NKM
Sbjct: 543 GYCKLGQLGTATHLMNKM 560



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 178/403 (44%), Gaps = 38/403 (9%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           L A+D+A++   W L LK     R     +  C T   L+  L K  + EQA  L++  L
Sbjct: 442 LHAIDDALRL--WFLMLK-----RGVAPNEISCST---LLDGLFKAGKTEQALNLWKETL 491

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           + GL  +V  +  +++   + G + EA   ++ MK +  C PD  TY  L     K  + 
Sbjct: 492 ARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELR-CPPDSLTYRTLFDGYCKLGQL 550

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                ++ +M +LG   S   +N+ I G+  AK++ ++    S M  + G  P++ T  +
Sbjct: 551 GTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM-SARGLSPNLVTYGA 609

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD------------- 308
           +I+ +   GN+ +    Y E    G+  ++   + L   + + G  D             
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNID 669

Query: 309 -------------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                        K+  V+D +         V +N++I    K+G I   +  F+ ++++
Sbjct: 670 MIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNK 729

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P++ TY SL+   + +G I +  S+   + ++ +  +   +N +I    ++G + + 
Sbjct: 730 RFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRA 789

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             LF  ++ +   P+ IT+ T+I  Y   G T  A  L+ KM+
Sbjct: 790 VNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMV 832



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 153/345 (44%), Gaps = 3/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F  L+       Q   A  +F+ M   G +PS+     L++   QSG    A      M
Sbjct: 150 SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQM 209

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + ++   PD +T +I+ K+  +  R     + + EM  +G+E + V Y+ ++D Y     
Sbjct: 210 R-IAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTL 294
            E+      ++ +  G  P++ T   ++  Y   G +E+ E+   E    G +  D    
Sbjct: 269 TEDARRILESL-QRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAY 327

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            ++   Y + G  D    V + M+       +  YN +I    K G +E++++  ++M+ 
Sbjct: 328 GMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMED 387

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            GM+P+  +Y +L+  Y + G + K   + R +  + +   T  +N ++  +     ++ 
Sbjct: 388 VGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDD 447

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              L+  M +R   P+ I+ +T++      G TE A NL  + +A
Sbjct: 448 ALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLA 492



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 153/363 (42%), Gaps = 30/363 (8%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G C++    +A  +  +M+ +GL  +   Y  L+  +     +D+A      M       
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK-RGVA 461

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+  + S L+    K  + +    +  E    G+  + +T+NT+I+G  K  +  E E  
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M E   C PD  T  ++   Y   G +       N+   +G    ++  N     + 
Sbjct: 522 LDRMKELR-CPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHF 580

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            A  + K+  +   M  R   P +VTY  +I  + K G++ +    + +M + GM PN  
Sbjct: 581 IAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVF 640

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVI----------------LDT---------- 396
              +L+S + K G + + + +L+++ N D+I                +DT          
Sbjct: 641 ICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSAN 700

Query: 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456
             +N II    ++G +     LF +++ +  +PDN T++++I    A G  + A +L + 
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 457 MIA 459
           M++
Sbjct: 761 MLS 763



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 153/313 (48%), Gaps = 15/313 (4%)

Query: 122 VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           ++ G CK+    E  +L FE M+++G+ P+V + +AL+S + + G +DEA   +  + ++
Sbjct: 610 LIAGWCKEGNLHEACNLYFE-MVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            D  P     +I I         D I  ++  ++      + V +N II G  K+ +  +
Sbjct: 669 -DMIPGCSISTIEI---------DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIAD 718

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            +S F ++  +    PD FT +S+I     SG+I++     +     G+  +I T N L 
Sbjct: 719 AKSLFESL-RNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLI 777

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               ++G   +  ++ + +Q +   P  +TYN +I+ + K G   +  +  +KM   G++
Sbjct: 778 YGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQ 837

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P  ITY  L+      G + +   +L Q+  ++V  +   +  +I  Y ++G++E++ +L
Sbjct: 838 PTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKL 897

Query: 419 FLTMKERHCVPDN 431
           +  M  R  +P N
Sbjct: 898 YDEMHIRGLLPTN 910


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 2/319 (0%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M ++G+ P+V  Y A++    QSG ++ A     +M+++   +PDV TY+ L+    K  
Sbjct: 334 MENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMG-LQPDVITYNSLLNGYCKAG 392

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
                  +  ++ + G+  + +TYN +IDGY +    EE       MVE G C PD+ T 
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG-CLPDVCTY 451

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             ++    N+ ++    ++++E    G++ D    N   ++    G   K   + + M  
Sbjct: 452 TILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMML 511

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                  VTYNI+I+   K G++   ++   KM H G++P+ ITY  L+ A+ + GL+ +
Sbjct: 512 EGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLRE 571

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
                + + +  +      +   I AY + G++      F  M E    P+ IT+  +I 
Sbjct: 572 ARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIH 631

Query: 440 AYNALGMTEAAQNLENKMI 458
           A    G T+ A    ++M+
Sbjct: 632 ALCRTGRTQLAYRHFHEML 650



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 4/285 (1%)

Query: 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228
            S  ++M S     PDV   + +++  +   R+D I  + AEM  LGIE S VTYNT++D
Sbjct: 187 LSAFHEMAS-HGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLD 245

Query: 229 GYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            + K  + +++      M   G GC P+  T N +I+     G++E+  +      L   
Sbjct: 246 SFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRL-SK 304

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           KA   T N L       G   K   +   M+     PTVVTYN +I    ++G +E  + 
Sbjct: 305 KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
            F +M+  G++P+ ITY SL++ Y KAG + +   +   + ++ +      +N +I  Y 
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYC 424

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQ-AYNALGMTEAAQ 451
           + GD+E+   L   M E+ C+PD  T+  +++ ++NA  +  A +
Sbjct: 425 RLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMARE 469



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 139/325 (42%), Gaps = 2/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L +  Q E A + F  M + GL+P V  Y +L++ Y ++G L EA     D+
Sbjct: 345 TYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDL 404

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +  +   P V TY+ILI    +    +   ++  EM   G      TY  ++ G   A  
Sbjct: 405 RH-AGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACS 463

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
                  F  M+ S G  PD F  N+ I A    G I K  +      L G+ +D  T N
Sbjct: 464 LAMAREFFDEML-SKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYN 522

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL     + G  +  + +   M      P  +TY  +I    + G + +  ++FK M   
Sbjct: 523 ILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD 582

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+++TY   + AY + G +       R++    V  +   +N +I A  + G  +  
Sbjct: 583 GLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLA 642

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
              F  M ER  VP+  T+  +I  
Sbjct: 643 YRHFHEMLERGLVPNKYTYTLLIDG 667



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 36/355 (10%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILI------ 192
           ML  G++PS+  Y  L+ ++ + G  D+    + +M++  S C P+  T++++I      
Sbjct: 228 MLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARK 287

Query: 193 ----------------KSCTKFHRFDLIEKILA------------EMSYLGIECSAVTYN 224
                           K  + F    LI  +LA            EM   GI  + VTYN
Sbjct: 288 GDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYN 347

Query: 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
            +I G  ++ + E  +  F  M  + G  PD+ T NS+++ Y  +G++++    + +   
Sbjct: 348 AMIHGLLQSGQVEAAQVKFVEM-RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRH 406

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G+   + T NIL   Y R G  ++ R + + M ++   P V TY I+++    A  +  
Sbjct: 407 AGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAM 466

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404
             E+F +M  +G++P+   Y + + A    G I K   +   +    +  DT  +N +I 
Sbjct: 467 AREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILID 526

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              + G++    +L + M      PD IT+  +I A+   G+   A+     MI+
Sbjct: 527 GLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMIS 581



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           Q  C T+T L+    +     +A   F+ M+SDGL PS   YT  + AY + G L  A+ 
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG 609

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               M      +P+  TY++LI +  +  R  L  +   EM   G+  +  TY  +IDG 
Sbjct: 610 WFRKMLE-EGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGN 668

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
            K   +E+    +  M ++ G HPD  T  ++   +
Sbjct: 669 CKEGNWEDAMRFYFEMHQN-GIHPDYLTHKALFKGF 703


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 160/371 (43%), Gaps = 37/371 (9%)

Query: 123 MLGKCKQPEQAS----LLFEVMLSDGLKPSV--DVYTALVSAYGQSGLLDEAFSTINDMK 176
           +LG   +P  A+    LL    L+ G + S    V   L+S     GLLD+A   +  ++
Sbjct: 102 LLGAGHRPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADHGLLDDAVRALARVR 161

Query: 177 SVS------DCK------------------------PDVYTYSILIKSCTKFHRFDLIEK 206
            +        C                         P+V+T++I+I    K         
Sbjct: 162 QLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARA 221

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
           +   M  +G     VTYN++IDGYGK    EE+E   S M +SG C  D+ T N++I+ +
Sbjct: 222 LFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG-CAADVVTYNALINCF 280

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G +EK   ++ E    GV A++ T +    ++ + G+  +   +   M+ R   P  
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
            TY  +++   KAG ++       +M H+G+ PN +TY  +V    K G + + D++L  
Sbjct: 341 FTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSL 400

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446
           +E   V  +   +  +I  +    + E+  +L   MK +    D   + T+I        
Sbjct: 401 MERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQK 460

Query: 447 TEAAQNLENKM 457
            + A++L +KM
Sbjct: 461 VDEAKSLLHKM 471



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 149/343 (43%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K  + E+A   F  M   G+  +V  ++  V A+ + GL+ EA      M
Sbjct: 272 TYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQM 331

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V    P+ +TY+ L+    K  R D    +L EM + G+  + VTY  ++DG  K  K
Sbjct: 332 R-VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGK 390

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E ++  S M E GG   +     ++I  +  + N E+     N+    G++ D+    
Sbjct: 391 VAEADNVLSLM-ERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYG 449

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +    D+ +S++  M      P  V Y  +++   KAG   +      K+   
Sbjct: 450 TLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDS 509

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G +PN +TYC+L+    KAG I +  S   ++    +  +   +  +I  + + G + K 
Sbjct: 510 GFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKA 569

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             L   M ++    D + + ++I  Y      + A  L+ KMI
Sbjct: 570 MHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMI 612



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 172/406 (42%), Gaps = 46/406 (11%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKP 147
           + ++  L  ++F LL     +     TF  ++  L  CK+ E  +A  LF  M + G  P
Sbjct: 181 RNRQGGLVRRLFDLLPVPNVF-----TFNIVIDFL--CKEGELVEARALFVRMKAMGCSP 233

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            V  Y +L+  YG+ G L+E    +++M+  S C  DV TY+ LI   +KF R +     
Sbjct: 234 DVVTYNSLIDGYGKCGDLEEVEQLVSEMRK-SGCAADVVTYNALINCFSKFGRMEKAYSY 292

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             EM   G+  + VT++T +D + K    +E    F+ M    G  P+ FT  S++    
Sbjct: 293 FGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQM-RVRGMMPNEFTYTSLVDGTC 351

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK------RF 321
            +G ++      +E    G+  ++ T  ++     + G   +  +V+  M++        
Sbjct: 352 KAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANEL 411

Query: 322 FFPTVV-----------------------------TYNIVIETFGKAGHIEKMEEYFKKM 352
            + T++                              Y  +I    K   +++ +    KM
Sbjct: 412 LYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
              G++PN++ Y +++ A  KAG   +  ++L ++ +S    +   +  +I    +AG +
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +    F  M+E    P+   +  +I  +  +G    A +L N+MI
Sbjct: 532 SEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMI 577



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 162/375 (43%), Gaps = 7/375 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLS 142
           +D   K+   Q A+K+F  +R +         FT   ++ G CK  + + A +L + M+ 
Sbjct: 312 VDAFCKEGLVQEAMKLFAQMRVRGMMP---NEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 368

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
            GL P+V  YT +V    + G + EA + ++ M+     K +   Y+ LI      +  +
Sbjct: 369 QGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMER-GGVKANELLYTTLIHGHFMNNNSE 427

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
               +L +M   G+E     Y T+I G  K +K +E +S    M   G   P+     ++
Sbjct: 428 RALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCG-LRPNTVIYTTI 486

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           + A   +G   +     ++    G + ++ T   L     +AG   +  S  + M++   
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P V  Y  +I+ F K G + K      +M  +GM  + + Y SL+  Y K   +    +
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFA 606

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  ++  S + LD   + C IS +     +++   +   M      PD   +  +I+ Y 
Sbjct: 607 LKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQ 666

Query: 443 ALGMTEAAQNLENKM 457
            LG  E A +L+N+M
Sbjct: 667 KLGNMEEASSLQNEM 681


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 12/345 (3%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           FG   +   Y      FT   +M G CK  + ++A  L + M   GLKP+V VY  LV  
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDG 359

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G   EAF  +N+M S    +P+   Y  LI+   K  +     K+L EM  +G   
Sbjct: 360 FMKEGKAAEAFDILNEMISAG-VQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRP 418

Query: 219 SAVTYNTIIDG----YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
              TY+ ++ G    Y K   FE +       + + G  P+ +T   MI+    +G  ++
Sbjct: 419 DTFTYHPLMQGHFQHYDKDGAFELLNE-----MRNSGILPNAYTYGIMINGLCQNGESKE 473

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
                 E    G+K +      L   + + G        ++ M K    P +  YN +I+
Sbjct: 474 AGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIK 533

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
                G IE+ EEY+ +++ RG+ P+  TY  L+  Y K   + K D +L+Q+ NS +  
Sbjct: 534 GLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKP 593

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           +   +  ++  Y ++ D EK+  +  +M      PDN  +  +I+
Sbjct: 594 NADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIR 638



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 6/352 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++  +    K +  + A  +FE M       +   Y  ++S   +SG ++EAF    +M
Sbjct: 247 TYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEM 306

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PD +TY  L+    K  R    + +L EMS  G++ + V Y T++DG+ K  K
Sbjct: 307 VDYG-LSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGK 365

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E     + M+ S G  P+    +++I      G + +  K  NE   +G + D  T +
Sbjct: 366 AAEAFDILNEMI-SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYH 424

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L + + +    D    +++ M+     P   TY I+I    + G  ++     ++M   
Sbjct: 425 PLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISE 484

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+KPN+  Y  L+  +SK G I      L  +  ++V+ D   +N +I      G +E+ 
Sbjct: 485 GLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEA 544

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467
            E +  +++R  VPD  T++ +I  Y      E A  L  +M+    NSG K
Sbjct: 545 EEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML----NSGLK 592



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 174/397 (43%), Gaps = 44/397 (11%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL + +        +T  +++ G C+  E  +A  L E M+S+GLKP+  +Y  L+  
Sbjct: 440 FELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIG 499

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           + + G +  A  ++ +M + ++  PD++ Y+ LIK  +   R +  E+  A++   G+  
Sbjct: 500 HSKEGHISLACESLENM-TKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVP 558

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
              TY+ +I GY K +  E+ +     M+ SG   P+  T   ++  Y  S + EK+   
Sbjct: 559 DEFTYSGLIHGYCKTRNLEKADQLLQQMLNSG-LKPNADTYTDLLEGYFKSNDHEKVSSI 617

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRA---------------------------------G 305
                  G K D     I+ ++  R+                                  
Sbjct: 618 LQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCK 677

Query: 306 MYDKMRSV--MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
           M D  ++V  +D M K    P +V YN +I+ F ++G I +    F  +  +G+ PN +T
Sbjct: 678 MADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVT 737

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT-- 421
           Y +L+    K G I     + + + +  +  D   +N + +    A D+E+   LFLT  
Sbjct: 738 YTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQ--ALFLTEE 795

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           M  R     ++ F+T+++ +   G  +  + L + M+
Sbjct: 796 MFNRGYAHVSL-FSTLVRGFCKRGRLQETEKLLHVMM 831



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 151/343 (44%), Gaps = 2/343 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +  L+  L K  Q  +AS L   M+  G +P    Y  L+  + Q    D AF  +N+M+
Sbjct: 388 YDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMR 447

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           + S   P+ YTY I+I    +         +L EM   G++ +A  Y  +I G+ K    
Sbjct: 448 N-SGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHI 506

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
                S   M ++    PD+F  NS+I      G IE+ E++Y +    G+  D  T + 
Sbjct: 507 SLACESLENMTKAN-VLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSG 565

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   Y +    +K   ++  M      P   TY  ++E + K+   EK+    + M   G
Sbjct: 566 LIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSG 625

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
            KP++  Y  ++   S++  +     +L +VE + ++ D   ++ +IS   +  D+EK  
Sbjct: 626 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAV 685

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            L   M +    P  + +  +I  +   G    A+N+ + ++A
Sbjct: 686 GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 728



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 4/330 (1%)

Query: 113 RCQTFTKLMVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           R  TFT   +M G  +  ++  A  L   M + G+ P+   Y  +++   Q+G   EA +
Sbjct: 417 RPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGN 476

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            + +M S    KP+ + Y+ LI   +K     L  + L  M+   +      YN++I G 
Sbjct: 477 LLEEMIS-EGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGL 535

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
               + EE E  + A V+  G  PD FT + +I  Y  + N+EK ++   +    G+K +
Sbjct: 536 STVGRIEEAEEYY-AQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPN 594

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   L + Y ++  ++K+ S++  M      P    Y IVI    ++ ++E       
Sbjct: 595 ADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLT 654

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +++  G+ P+   Y SL+S   K   + K   +L ++    +      +N +I  + ++G
Sbjct: 655 EVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSG 714

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQA 440
           D+ +   +F ++  +  +P+ +T+  +I  
Sbjct: 715 DISRARNVFDSILAKGLLPNCVTYTALIDG 744



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 10/278 (3%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           PDVYTYS  +++  K   FD  +K+  EM       + VTYN +I G  ++   EE    
Sbjct: 243 PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 302

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              MV+  G  PD FT  ++++     G +++ +   +E +  G+K ++     L   + 
Sbjct: 303 KEEMVDY-GLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFM 361

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G   +   +++ M      P  + Y+ +I    K G + +  +   +M   G +P++ 
Sbjct: 362 KEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTF 421

Query: 363 TYCSLVSA----YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           TY  L+      Y K G       +L ++ NS ++ +   +  +I+   Q G+ ++ G L
Sbjct: 422 TYHPLMQGHFQHYDKDGAF----ELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL 477

Query: 419 FLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 455
              M      P+   +A +I  ++  G ++ A ++LEN
Sbjct: 478 LEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLEN 515



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 132/309 (42%), Gaps = 2/309 (0%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           V   LV  Y ++G +  A   +  M  +    P     + L+K   +    +L+ K+   
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLG-LAPTRRCCNGLLKDLLRADAMELVWKLKGF 235

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           M   GI     TY+T ++ + KA+ F+  +  F  M     C  +  T N MIS    SG
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRR-DCAMNEVTYNVMISGLCRSG 294

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
            +E+   +  E    G+  D  T   L     + G   + ++++D M      P VV Y 
Sbjct: 295 AVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYA 354

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
            +++ F K G   +  +   +M   G++PN I Y +L+    K G + +   +L ++   
Sbjct: 355 TLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKV 414

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
               DT  ++ ++  + Q  D +   EL   M+    +P+  T+  MI      G ++ A
Sbjct: 415 GHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEA 474

Query: 451 QNLENKMIA 459
            NL  +MI+
Sbjct: 475 GNLLEEMIS 483



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 145/336 (43%), Gaps = 47/336 (13%)

Query: 97  ALKIFGLLRQQQWYQARCQ---------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP 147
            L   G + + + Y A+ Q         T++ L+    K +  E+A  L + ML+ GLKP
Sbjct: 534 GLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKP 593

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL---- 203
           + D YT L+  Y +S   ++  S +  M    D KPD + Y I+I++ ++    ++    
Sbjct: 594 NADTYTDLLEGYFKSNDHEKVSSILQSMLGSGD-KPDNHIYGIVIRNLSRSENMEVAFMV 652

Query: 204 ---IEK----------------------------ILAEMSYLGIECSAVTYNTIIDGYGK 232
              +EK                            +L EM+  G+E   V YN +IDG+ +
Sbjct: 653 LTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCR 712

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
           +       + F +++ + G  P+  T  ++I     +G+I      Y +    G+  D  
Sbjct: 713 SGDISRARNVFDSIL-AKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAF 771

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N+L      A   ++   + + M  R +   V  ++ ++  F K G +++ E+    M
Sbjct: 772 VYNVLATGCSDAADLEQALFLTEEMFNRGY-AHVSLFSTLVRGFCKRGRLQETEKLLHVM 830

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
             R + PN+ T  ++++ + KAG + +   +  +++
Sbjct: 831 MDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQ 866



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 111/260 (42%), Gaps = 5/260 (1%)

Query: 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
           +++  M  LG+  +    N ++    +A   E +       +E  G  PD++T ++ + A
Sbjct: 196 QVVLMMGDLGLAPTRRCCNGLLKDLLRADAME-LVWKLKGFMEGAGIPPDVYTYSTFLEA 254

Query: 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
           +  + + +  +K + E        +  T N++     R+G  ++     + M      P 
Sbjct: 255 HCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPD 314

Query: 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
             TY  ++    K G +++ +    +M   G+KPN + Y +LV  + K G   +   IL 
Sbjct: 315 AFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILN 374

Query: 386 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
           ++ ++ V  +   ++ +I    + G + +  +L   M +    PD  T+  ++Q +    
Sbjct: 375 EMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHY 434

Query: 446 MTEAAQNLENKMIAMKENSG 465
             + A  L N+M     NSG
Sbjct: 435 DKDGAFELLNEM----RNSG 450


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 170/359 (47%), Gaps = 4/359 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LL   + +      ++  +++ G CK  Q E+A  L E M+   +KPS+  Y++L   
Sbjct: 343 FELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDG 402

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
             +SGL + + S  +++ +    K DV +Y+ LI             K++ EM   G   
Sbjct: 403 LCKSGLTEISLSMFHNLGA-EGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVP 461

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           ++ T+N +I G+ K ++ ++    F+ M++ G    +IFT N M   +   G+  +  K 
Sbjct: 462 NSFTFNRLIHGFCKRQRLDKALEVFTIMLKVG-VQLNIFTCNIMADEFNREGHFWEALKL 520

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
            NE   +G+  +  T NI+ K   +    +K   V+  M K   FP  + YN +I+ + K
Sbjct: 521 INEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAK 580

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
             +  K    + KM   G+ P+ +TY  L++ +S    + +   + +++    ++ D   
Sbjct: 581 QSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEII 640

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           F CII+ + + GD++    L+  M +    P+ +T+  +I  Y  +   + A  L NKM
Sbjct: 641 FTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKM 699



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 139/322 (43%), Gaps = 37/322 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF +L+    K ++ ++A  +F +ML  G++ ++     +   + + G   EA   IN++
Sbjct: 465 TFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEV 524

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +    P+ YTY+I+IK   K  + +   ++L  M    +   A+ YNT+IDGY K   
Sbjct: 525 QDLG-IVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSN 583

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             +    ++ M++ G   P I T   +I+ + N   +++    + E              
Sbjct: 584 PTKALLLYAKMLKVG-IPPSIVTYTMLINMFSNRSKMQEAYYLFKE-------------- 628

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                                M K+   P  + +  +I  F K G ++     +++M   
Sbjct: 629 ---------------------MIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQW 667

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  PN +TY  L+  Y K   + K D +  +++  +V  D   +  +I  Y   G  +++
Sbjct: 668 GKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRV 727

Query: 416 GELFLTMKERHCVPDNITFATM 437
            E+F  MKE    P+   +AT+
Sbjct: 728 REMFNEMKENGVFPNYTAYATL 749



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 136/307 (44%), Gaps = 2/307 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y A++  + ++G L EAF  + DM+S     P  Y+YSILI    K  + +    ++ EM
Sbjct: 326 YNAVIHEFCRNGELHEAFELLEDMRS-HGISPTAYSYSILIDGLCKKGQVEKALDLIEEM 384

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
               ++ S VTY+++ DG  K+   E   S F  +   G  H D+ + N++I+ +    +
Sbjct: 385 VQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKH-DVISYNTLINGFVLQRD 443

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           +    K  +E  + G   +  T N L   + +    DK   V   M K      + T NI
Sbjct: 444 MGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNI 503

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           + + F + GH  +  +   +++  G+ PNS TY  ++    K     K   +L  +  ++
Sbjct: 504 MADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNN 563

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           V      +N +I  Y +  +  K   L+  M +    P  +T+  +I  ++     + A 
Sbjct: 564 VFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAY 623

Query: 452 NLENKMI 458
            L  +MI
Sbjct: 624 YLFKEMI 630



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 155/394 (39%), Gaps = 46/394 (11%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+  +   L +F  L    W  A    F K +   G         ++  V+ S GL+  V
Sbjct: 84  KRGLFPFVLTVFKTL---NWKLATHTNFFKAVSFHGFSHSIYAFKIIIHVLASAGLQMEV 140

Query: 150 DVYTALVSAYGQSGLLD--EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            ++   + +Y +   LD  E FST+ D    +     +   ++LIK   + +       +
Sbjct: 141 QIFLRDIISYYKEVNLDVSELFSTLLDSPQDAHMGGSIIVANVLIKVFAENNMLVDAADV 200

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY- 266
             +    G+E + ++ N +++ + +A + E + S F  + +SG   P++FT   M++ Y 
Sbjct: 201 FVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSGP-SPNVFTYTIMMNYYC 259

Query: 267 ----GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-KMRSVMDF----- 316
               G + +I K  +   E  + G    + T         RAG  +  +R + D      
Sbjct: 260 KGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQ 319

Query: 317 -----------------------------MQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
                                        M+     PT  +Y+I+I+   K G +EK  +
Sbjct: 320 PLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALD 379

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
             ++M    +KP+ +TY SL     K+GL     S+   +       D   +N +I+ + 
Sbjct: 380 LIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFV 439

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              D+    +L   M+    VP++ TF  +I  +
Sbjct: 440 LQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGF 473



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 243 FSAMVES------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           FS +++S      GG    I   N +I  +  +  +      + +    G++ +I + N 
Sbjct: 162 FSTLLDSPQDAHMGG---SIIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNF 218

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----TFGKAGHIEKMEEYFKK 351
           L   +  A   + +RS+ + ++     P V TY I++      +FGK   I K  E  ++
Sbjct: 219 LLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEE 278

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M+  G  P  +TY + +    +AG +     ++R +   +  L++  +N +I  + + G+
Sbjct: 279 MEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGE 338

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           + +  EL   M+     P   +++ +I      G  E A +L  +M+
Sbjct: 339 LHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMV 385


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 2/273 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L +  +   A+ L   M+  G++P+V  +TAL+ A+ + G + EA      M
Sbjct: 224 TYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVM 283

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +S   PDV+TY+ LI     + R D   ++   M   G   + VTY T+I G+ K+K+
Sbjct: 284 IQMS-VYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKR 342

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+    F  M + G     I T   +I  Y   G  +  ++ +N+        DI+T N
Sbjct: 343 VEDGTKIFYEMSQKGLVANTI-TYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYN 401

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           +L       G  +K   +  +M+KR     +VTY I+I+   K G +E   + F  +  +
Sbjct: 402 VLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSK 461

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
           GMKPN ITY +++S + + G I + D++ ++++
Sbjct: 462 GMKPNVITYTTMISGFCRRGFIHEADALFKKMK 494



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 165/366 (45%), Gaps = 7/366 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKP 147
           K K++ + + +F    Q Q        +T  +VM   C+  QP +AS     M+  G +P
Sbjct: 94  KMKRFDVVISLF---EQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEP 150

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +  +T+L+  +     +++A +  + +  +   +P+V TY+ LI    K    +   +I
Sbjct: 151 DLVTFTSLLHGFCHWNRIEDALALFDQIVGMGF-RPNVVTYTTLIHCLCKNRHLNHAVEI 209

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             +M   GI  + VTYN+++ G  +  ++ +       M++ G   P++ T  ++I A+ 
Sbjct: 210 FNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRG-IQPNVITFTALIDAFV 268

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G I + ++ Y     M V  D+ T   L       G  D+ R +   M+   ++P  V
Sbjct: 269 KVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEV 328

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           TY  +I  F K+  +E   + F +M  +G+  N+ITY  L+  Y   G       +  Q+
Sbjct: 329 TYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQM 388

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            +     D   +N ++      G VEK   +F  M++R    + +T+  +IQ    +G  
Sbjct: 389 GSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKV 448

Query: 448 EAAQNL 453
           E A +L
Sbjct: 449 EDAFDL 454



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 152/342 (44%), Gaps = 2/342 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TFT L+       + E A  LF+ ++  G +P+V  YT L+    ++  L+ A    N M
Sbjct: 154 TFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM 213

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  +P+V TY+ L+    +  R+     +L +M   GI+ + +T+  +ID + K  K
Sbjct: 214 GD-NGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGK 272

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E +  +  M++    +PD+FT  ++I+     G +++  + +      G   +  T  
Sbjct: 273 IMEAKELYKVMIQMS-VYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYT 331

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L   + ++   +    +   M ++      +TY ++I+ +   G  +  +E F +M  R
Sbjct: 332 TLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSR 391

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P+  TY  L+      G + K   I + +   ++ ++   +  II    + G VE  
Sbjct: 392 RAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDA 451

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +LF ++  +   P+ IT+ TMI  +   G    A  L  KM
Sbjct: 452 FDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKM 493



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 150/329 (45%), Gaps = 2/329 (0%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           Q  +A  LF  M+     PS+  +T L+S   +    D   S    M+ +    P +YT 
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQ-ILGISPVLYTC 120

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +I++    +  +       L +M  LG E   VT+ +++ G+    + E+  + F  +V 
Sbjct: 121 NIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIV- 179

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
             G  P++ T  ++I     + ++    + +N+    G++ ++ T N L       G + 
Sbjct: 180 GMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWS 239

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
               ++  M KR   P V+T+  +I+ F K G I + +E +K M    + P+  TY +L+
Sbjct: 240 DAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
           +     G + +   +   +E++    +   +  +I  + ++  VE   ++F  M ++  V
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
            + IT+  +IQ Y  +G  + AQ + N+M
Sbjct: 360 ANTITYTVLIQGYCLVGRPDVAQEVFNQM 388



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 4/260 (1%)

Query: 103 LLRQ--QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR   ++  Q    TFT L+    K  +  +A  L++VM+   + P V  YTAL++   
Sbjct: 244 LLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLC 303

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
             G LDEA      M+S +   P+  TY+ LI    K  R +   KI  EMS  G+  + 
Sbjct: 304 TYGRLDEARQMFYLMES-NGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANT 362

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           +TY  +I GY    + +  +  F+ M  S    PDI T N ++     +G +EK    + 
Sbjct: 363 ITYTVLIQGYCLVGRPDVAQEVFNQM-GSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFK 421

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
                 +  +I T  I+ +   + G  +    +   +  +   P V+TY  +I  F + G
Sbjct: 422 YMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRG 481

Query: 341 HIEKMEEYFKKMKHRGMKPN 360
            I + +  FKKMK  G  PN
Sbjct: 482 FIHEADALFKKMKEDGFLPN 501



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 1/226 (0%)

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +F E    F+ MV S    P I     ++S        + +   + +  ++G+   + T 
Sbjct: 62  QFNEALDLFTRMVHSRPL-PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTC 120

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NI+     R+    +    +  M K  F P +VT+  ++  F     IE     F ++  
Sbjct: 121 NIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVG 180

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            G +PN +TY +L+    K   +     I  Q+ ++ +  +   +N ++S   + G    
Sbjct: 181 MGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSD 240

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              L   M +R   P+ ITF  +I A+  +G    A+ L   MI M
Sbjct: 241 AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQM 286


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 167/384 (43%), Gaps = 39/384 (10%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           +E +   +K  K +    +  ++R+ ++  A    +T L+         +    LF+ M 
Sbjct: 137 IEMVLGCVKANKLREGYDVVQMMRKFKFRPAF-SAYTTLIGAFSAVNHSDMMLTLFQQMQ 195

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
             G +P+V ++T L+  + + G +D A S +++MKS S    D+  Y++ I S  K  + 
Sbjct: 196 ELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGKVGKV 254

Query: 202 DLIEKILAEM-------------SYLGIECSA----------------------VTYNTI 226
           D+  K   E+             S +G+ C A                        YNT+
Sbjct: 255 DMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTM 314

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I GYG A KF+E  S       + G  P +   N +++     G +++  K + E     
Sbjct: 315 IMGYGSAGKFDEAYSLLERQ-RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KD 372

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
              ++ T NIL     RAG  D    + D MQK   FP V T NI+++   K+  +++  
Sbjct: 373 AAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F++M ++   P+ IT+CSL+    K G +     +  ++ +SD   ++  +  +I  +
Sbjct: 433 AMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNF 492

Query: 407 GQAGDVEKMGELFLTMKERHCVPD 430
              G  E   +++  M  ++C PD
Sbjct: 493 FNHGRKEDGHKIYKDMINQNCSPD 516



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 161/392 (41%), Gaps = 44/392 (11%)

Query: 108 QWYQARCQ------TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD----------- 150
           +WY+ R +      ++  L++++ +C+  +    +   M   G  PSV+           
Sbjct: 86  RWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVK 145

Query: 151 ------------------------VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
                                    YT L+ A+      D   +    M+ +   +P V+
Sbjct: 146 ANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG-YEPTVH 204

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            ++ LI+   K  R D    +L EM    ++   V YN  ID +GK  K  +M   F   
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKV-DMAWKFFHE 263

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
           +E+ G  PD  T  SMI     +  +++  + +               N +   YG AG 
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
           +D+  S+++  + +   P+V+ YN ++    K G +++  + F++MK +   PN  TY  
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNI 382

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           L+    +AG +     +   ++ + +  +    N ++    ++  +++   +F  M  + 
Sbjct: 383 LIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV 442

Query: 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           C PD ITF ++I     +G  + A  +  KM+
Sbjct: 443 CTPDEITFCSLIDGLGKVGRVDDAYKVYEKML 474



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 159/356 (44%), Gaps = 14/356 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPS 148
           K  +   A+++F  L + +  +  C      M+M  G   + ++A  L E   + G  PS
Sbjct: 285 KANRLDEAVEMFEHLEKNR--RVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  Y  +++   + G +DEA     +MK   D  P++ TY+ILI    +  + D   ++ 
Sbjct: 343 VIAYNCILTCLRKMGKVDEALKVFEEMKK--DAAPNLSTYNILIDMLCRAGKLDTAFELR 400

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
             M   G+  +  T N ++D   K++K +E  + F  M +   C PD  T  S+I   G 
Sbjct: 401 DSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLIDGLGK 459

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNI----LTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
            G ++   K Y +     + +D +T +I    L K++   G  +    +   M  +   P
Sbjct: 460 VGRVDDAYKVYEKM----LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            +   N  ++   KAG  EK    F+++K R   P++ +Y  L+    KAG   +   + 
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELF 575

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             ++    +LDT  +N +I  + + G V K  +L   MK +   P  +T+ ++I  
Sbjct: 576 YSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 148/335 (44%), Gaps = 3/335 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  ++  L K  + ++A  +FE M  D   P++  Y  L+    ++G LD AF   + M
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSM 403

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +      P+V T +I++    K  + D    +  EM Y       +T+ ++IDG GK  +
Sbjct: 404 QKAG-LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++    +  M++S  C  +     S+I  + N G  E   K Y +        D+Q LN
Sbjct: 463 VDDAYKVYEKMLDSD-CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLN 521

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                  +AG  +K R++ + ++ R F P   +Y+I+I    KAG   +  E F  MK +
Sbjct: 522 TYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ 581

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G   ++  Y  ++  + K G + K   +L +++          +  +I    +   +++ 
Sbjct: 582 GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA 641

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
             LF   K +    + + ++++I  +  +G  + A
Sbjct: 642 YMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 2/325 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q     M  + K  +PE+   +FE + +    P    Y+ L+    ++G  +E +     
Sbjct: 518 QLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYS 577

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK    C  D   Y+I+I    K  + +   ++L EM   G E + VTY ++IDG  K  
Sbjct: 578 MKE-QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKID 636

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           + +E    F    +S     ++   +S+I  +G  G I++      E    G+  ++ T 
Sbjct: 637 RLDEAYMLFEE-AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTW 695

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N L  +  +A   ++       M++    P  VTY I+I    K     K   ++++M+ 
Sbjct: 696 NSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK 755

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +GMKP++I+Y +++S  +KAG I +  ++  + + +  + D+  +N +I           
Sbjct: 756 QGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMD 815

Query: 415 MGELFLTMKERHCVPDNITFATMIQ 439
              LF   + R     N T   ++ 
Sbjct: 816 AFSLFEETRRRGLPIHNKTCVVLLD 840



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 159/386 (41%), Gaps = 39/386 (10%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K  K   ALK+F  +++         T+  L+ ML +  + + A  L + M   GL P+V
Sbjct: 355 KMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNV 412

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
                +V    +S  LDEA +   +M     C PD  T+  LI    K  R D   K+  
Sbjct: 413 RTVNIMVDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYE 471

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           +M       +++ Y ++I  +    + E+    +  M+    C PD+  LN+ +     +
Sbjct: 472 KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN-CSPDLQLLNTYMDCMFKA 530

Query: 270 GNIEKMEKWYNEFNL-----------------------------------MGVKADIQTL 294
           G  EK    + E                                       G   D +  
Sbjct: 531 GEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAY 590

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           NI+   + + G  +K   +++ M+ + F PTVVTY  VI+   K   +++    F++ K 
Sbjct: 591 NIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 650

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           + ++ N + Y SL+  + K G I +   IL ++    +  +   +N ++ A  +A ++ +
Sbjct: 651 KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINE 710

Query: 415 MGELFLTMKERHCVPDNITFATMIQA 440
               F +MKE  C P+ +T+  +I  
Sbjct: 711 ALVCFQSMKELKCTPNQVTYGILING 736



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 143/359 (39%), Gaps = 35/359 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  LGK  + + A  ++E ML    + +  VYT+L+  +   G  ++      DM
Sbjct: 449 TFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDM 508

Query: 176 ------------KSVSDCK----------------------PDVYTYSILIKSCTKFHRF 201
                        +  DC                       PD  +YSILI    K    
Sbjct: 509 INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFA 568

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           +   ++   M   G       YN +IDG+ K  K  +       M ++ G  P + T  S
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM-KTKGFEPTVVTYGS 627

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I        +++    + E     ++ ++   + L   +G+ G  D+   +++ + ++ 
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P + T+N +++   KA  I +    F+ MK     PN +TY  L++   K     K  
Sbjct: 688 LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
              ++++   +   T  +  +IS   +AG++ + G LF   K    VPD+  +  MI+ 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEG 806


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 2/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  ++  L K    E +  LF  M   GL P V  Y +L+  YG+ G L+E  S  N+M
Sbjct: 291 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 350

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K V  C PD+ TY+ LI    KF +     +  +EM   G++ + VTY+T+ID + K   
Sbjct: 351 KDVG-CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGM 409

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +     F  M  +G   P+ FT  S+I A   +GN+ +  K  N+    GVK +I T  
Sbjct: 410 MQGAIKLFVDMRRTG-LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYT 468

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L     +AG   +   V   M K    P    Y  ++  + KA  +E   +  K+M   
Sbjct: 469 ALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC 528

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
            +KP+ I Y S++  +     + +   IL ++++  +  +      II AY +AG     
Sbjct: 529 NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 588

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
              F  M++       +T+  +I      G+ E A +   +M+++
Sbjct: 589 LNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSL 633



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 20/318 (6%)

Query: 151 VYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
           V+  L S + + GLL+EA   FS + + +++    P   + + L+   +K     L+ K 
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTL----PKARSCNFLLHRLSKSGNGQLVRKF 276

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
             +M   GI  S  TYN +ID   K    E     F  M E G   PD+ T NS+I  YG
Sbjct: 277 FNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG-LSPDVVTYNSLIDGYG 335

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFFP 324
             G++E++   +NE   +G   DI T N L   Y +   ++KM    ++   M+     P
Sbjct: 336 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK---FEKMPRAFEYFSEMKNNGLKP 392

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
            VVTY+ +I+ F K G ++   + F  M+  G+ PN  TY SL+ A  KAG + +   +L
Sbjct: 393 NVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 452

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
             +  + V L+   +  ++    +AG + +  E+F +M +    P+   +  ++  Y   
Sbjct: 453 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY--- 509

Query: 445 GMTEAAQNLENKMIAMKE 462
                A+ +E+ M  +K+
Sbjct: 510 ---IKAERMEDAMKILKQ 524



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 141/286 (49%), Gaps = 5/286 (1%)

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           +S  G   L+ + F   NDM   +   P V+TY+++I    K    +   ++  +M  +G
Sbjct: 264 LSKSGNGQLVRKFF---NDMIG-AGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG 319

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
           +    VTYN++IDGYGK    EE+ S F+ M +  GC PDI T N +I+ Y     + + 
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEM-KDVGCVPDIITYNGLINCYCKFEKMPRA 378

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            ++++E    G+K ++ T + L  ++ + GM      +   M++    P   TY  +I+ 
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             KAG++ +  +    M   G+K N +TY +L+    KAG +++ + + R +    +  +
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              +  ++  Y +A  +E   ++   M E +  PD I + ++I  +
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 544



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 167/377 (44%), Gaps = 5/377 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K+   Q A+K+F  +R+         T+T L+    K     +A  L   ML  G
Sbjct: 401 IDAFCKEGMMQGAIKLFVDMRRTGLLPNE-FTYTSLIDANCKAGNLTEAWKLLNDMLQAG 459

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +K ++  YTAL+    ++G + EA      M       P+   Y+ L+    K  R +  
Sbjct: 460 VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK-DGISPNQQVYTALVHGYIKAERMEDA 518

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMI 263
            KIL +M+   I+   + Y +II G+   +K EE +     M   G   +P I T  ++I
Sbjct: 519 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIST--TII 576

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
            AY  +G       ++ E   +GV+A I T  +L     +AG+ +        M      
Sbjct: 577 DAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQ 636

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V  Y  +I+   K   IE  ++ F +M+ RGM P+   + +L+    K G + +   +
Sbjct: 637 PNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVL 696

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++    +  D   +  ++S + Q G++ +  + F  M E+  +P+ +    +++ Y  
Sbjct: 697 ISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYK 756

Query: 444 LGMTEAAQNLENKMIAM 460
            G  + A  L+N+M  M
Sbjct: 757 RGQLDEAIELKNEMERM 773



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 151/343 (44%), Gaps = 2/343 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ L+    K    + A  LF  M   GL P+   YT+L+ A  ++G L EA+  +NDM
Sbjct: 396 TYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 455

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +  K ++ TY+ L+    K  R    E++   M   GI  +   Y  ++ GY KA++
Sbjct: 456 LQ-AGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAER 514

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            E+       M E     PD+    S+I  + +   +E+ +    E    G+ A+     
Sbjct: 515 MEDAMKILKQMTECN-IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIST 573

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +  +Y +AG      +    MQ      T+VTY ++I+   KAG +E   +YF +M   
Sbjct: 574 TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSL 633

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G++PN   Y SL+    K   I     +  +++   +  D   F  +I    + G++++ 
Sbjct: 634 GLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEA 693

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             L   M E     D   + +++  ++  G    A+   N+MI
Sbjct: 694 LVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 736


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 51/352 (14%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
           +YT +++ + ++G +D+AF  +++MK     K DV  +S LI+   +  R D   + L +
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKE-RGVKMDVLLHSTLIQGLCRKGRID---EALEQ 56

Query: 211 MSYLGIECS--AVTYNTIIDGYGKAKK-------FEEMESSFSAMVESGGCHPDIFTLNS 261
              +G ECS   +TYNT+++G  KA +       F++ME  + A   S GC PD+ + ++
Sbjct: 57  FKSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEA---SHGCEPDVISYST 113

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I A   +  ++K  +++     +G   ++ T + L     +    D+  S++  ++   
Sbjct: 114 VIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGED 173

Query: 322 FFPTVVTYNIVIETFGKAG----------HI-------------------------EKME 346
             P  + YN V+  F + G          H+                         EK  
Sbjct: 174 MVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKAC 233

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
           ++F+++   G KPN +TY   V    KAG + +   IL ++  S V  D   ++ II  +
Sbjct: 234 QFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGF 293

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            +AG ++K  ++F  M    C+P  +TF T++  ++    +  A  +   M+
Sbjct: 294 CKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV 345



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 7/330 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-----LSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
           T+  ++  L K  + ++   LF+ M      S G +P V  Y+ ++ A  ++  +D+A+ 
Sbjct: 70  TYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE 129

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
               M++V  C P+V TYS LI    K  R D    +L ++    +   A+ YN +++G+
Sbjct: 130 YFKRMRAVG-CAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGF 188

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            +  K  E       M E G    +I   N+M+ A   +   EK  +++      G K +
Sbjct: 189 KRQGKPSECLELLLHMKEKGF-GINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPN 247

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           + T N+      +AG  D+   ++  M +    P V+TY+ +I+ F KAG ++K ++ F 
Sbjct: 248 VVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFT 307

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           +M      P+ +T+ +L+  +S+     +   +   + N+  I     +N ++     A 
Sbjct: 308 RMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGAD 367

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQA 440
            VE   E++  MK +   PD  T+A +IQ 
Sbjct: 368 SVESALEIYHKMKRKKRQPDANTYAPLIQC 397



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 117/269 (43%), Gaps = 17/269 (6%)

Query: 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241
           KP+V TY++ +    K  + D   +IL EM    +    +TY++IIDG+ KA + ++ + 
Sbjct: 245 KPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADD 304

Query: 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301
            F+ M+    C P   T  +++  +       +  + + +    G    +QT N+L    
Sbjct: 305 VFTRMM-VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361
             A   +    +   M+++   P   TY  +I+   +A  +++ +E+   M+   + PN 
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421
               +LV    K G          +V+ +  +LD     C      +AG+ ++  E+   
Sbjct: 424 AICHALVEVLCKQG----------EVDEACSVLDNVVEIC------KAGEPDEAVEVIEQ 467

Query: 422 MKERHCVPDNITFATMIQAYNALGMTEAA 450
           M  +   PD  T+  ++++   L   ++A
Sbjct: 468 MVLKGVRPDEATYVAVLRSLCGLDRVDSA 496



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/364 (19%), Positives = 147/364 (40%), Gaps = 41/364 (11%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQ----TFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145
           K  +    L++F  + ++      C+    +++ ++  L K ++ ++A   F+ M + G 
Sbjct: 80  KANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGC 139

Query: 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205
            P+V  Y++L+    +   +DEA+S +  +K   D  P    Y+ ++    +  +     
Sbjct: 140 APNVVTYSSLIDGLCKVDRVDEAYSLLMQLKG-EDMVPRAMYYNAVVNGFKRQGKPSECL 198

Query: 206 KILAEMSYLGI----------------------EC-------------SAVTYNTIIDGY 230
           ++L  M   G                        C             + VTYN  + G 
Sbjct: 199 ELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGL 258

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            KA K +E       MVES    PD+ T +S+I  +  +G ++K +  +    +      
Sbjct: 259 CKAGKVDEAYRILLEMVESK-VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPH 317

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
             T   L   +       +   V + M    F P + TYN++++    A  +E   E + 
Sbjct: 318 PVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYH 377

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
           KMK +  +P++ TY  L+    +A  + +    L  +E  +V+ +    + ++    + G
Sbjct: 378 KMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQG 437

Query: 411 DVEK 414
           +V++
Sbjct: 438 EVDE 441



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 116/314 (36%), Gaps = 56/314 (17%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F  ++  L K  + E+A   FE +L  G KP+V  Y   V    ++G +DEA+  + +M 
Sbjct: 216 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMV 275

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
             S   PDV TYS +I    K  R D  + +   M         VT+ T++ G+ + KK 
Sbjct: 276 E-SKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKS 334

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
            E       MV +G   P + T N ++     + ++E   + Y++      + D  T   
Sbjct: 335 REAFRVHEDMVNAGFI-PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAP 393

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--------------- 341
           L +   RA   D+ +  +D M+     P     + ++E   K G                
Sbjct: 394 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEIC 453

Query: 342 --------IEKMEEY-------------------------------FKKMKHRGMKPNSI 362
                   +E +E+                                F+KM  RG  P  +
Sbjct: 454 KAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLV 513

Query: 363 TYCSLVSAYSKAGL 376
           TY  L+     A +
Sbjct: 514 TYTLLIGEACSADM 527



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 20/192 (10%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           AL+I+  +++++  Q    T+  L+  L + ++ ++A    +VM +D + P+  +  ALV
Sbjct: 372 ALEIYHKMKRKKR-QPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 430

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDC------------------KPDVYTYSILIKSCTKF 198
               + G +DEA S ++++  +                     +PD  TY  +++S    
Sbjct: 431 EVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGL 490

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
            R D       +M+  G     VTY  +I     A   ++    F AMV + G  P   T
Sbjct: 491 DRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMV-AAGFTPQAQT 549

Query: 259 LNSMISAYGNSG 270
           + ++ S   ++G
Sbjct: 550 MRTLSSCLRDAG 561


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M S +   PD   Y  
Sbjct: 263 DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEM-SATGHTPDPSAYLG 321

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           L+++ T          +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 322 LMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 380

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 381 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 439

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 440 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 499

Query: 371 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 500 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 559

Query: 430 DNITFATMIQAYNALGMTEAAQ 451
           D  +   ++ AY   G+ + ++
Sbjct: 560 DERSLEGVLNAYCIAGVIDESK 581



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 171/370 (46%), Gaps = 14/370 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM--LSDGLKP 147
           ++  WQ +L++F  +++Q W +        ++ +LG+ + P       EV   L    + 
Sbjct: 110 RRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVFHDLPSESRT 168

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR----FDL 203
           ++  YT+L++AY ++ L +EA   ++ MK+ S   P   TY+ ++ +C +       FD+
Sbjct: 169 ALS-YTSLIAAYARNALHEEARELLDQMKA-SGVAPTAATYNTVLAACARATDPPVPFDM 226

Query: 204 IEKILAEMSY---LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260
           +  + AEM +     +     TYNT++         ++ E     M+E+ G  PD  +  
Sbjct: 227 LLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEA-GVLPDTASYR 285

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            ++ A+  +GN+ ++ + + E +  G   D      L +++   G   +  +V+  MQ  
Sbjct: 286 HIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQAD 345

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              PT  TY ++++ +G+ G  + + E F++M+   + P++ TY  L   +   G   +V
Sbjct: 346 GCPPTAATYRVLLDLYGRQGRFDGVRELFREMR-TTVPPDTATYNVLFRVFGDGGFFKEV 404

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             + + + +S+V  D      ++ A G+ G  E   E+   +     VP    +  +++A
Sbjct: 405 VELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEA 464

Query: 441 YNALGMTEAA 450
                M E A
Sbjct: 465 LGHAAMYEEA 474



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 130/302 (43%), Gaps = 11/302 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 101 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 159

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             L  E  +A++Y ++I  Y +    EE       M ++ G  P   T N++++A   + 
Sbjct: 160 HDLPSESRTALSYTSLIAAYARNALHEEARELLDQM-KASGVAPTAATYNTVLAACARAT 218

Query: 271 N----IEKMEKWYNEFNL---MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     + +   + E        V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 219 DPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVL 278

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P   +Y  +++ F  AG++ ++ E F +M   G  P+   Y  L+ A++  G   +  ++
Sbjct: 279 PDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAV 338

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ++          +  ++  YG+ G  + + ELF  M+     PD  T+  + + +  
Sbjct: 339 LRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGD 397

Query: 444 LG 445
            G
Sbjct: 398 GG 399



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 44/306 (14%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +MV  G+    E A  + + + ++G+ P+   YT LV A G + + +EA+   N M
Sbjct: 422 TCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMM 481

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                               T+      IE                TYN + + + K   
Sbjct: 482 --------------------TEIGSLPTIE----------------TYNALANAFAKGGL 505

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  +     D  + +++I AY     ++   K Y E        D ++L 
Sbjct: 506 FQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLE 565

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-H 354
            +  +Y  AG+ D+ +   + +Q     P+++ Y +++  + +        +  ++MK +
Sbjct: 566 GVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTN 625

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQA 409
           R    + +    +   Y        V+ +L    +E  D  L   FFN ++     +GQ 
Sbjct: 626 RASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQK 683

Query: 410 GDVEKM 415
           G   ++
Sbjct: 684 GRAARV 689



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSY 301
           F  M     C PD      +I   G  G    ++K    F+ +  ++    +   L  +Y
Sbjct: 121 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFHDLPSESRTALSYTSLIAAY 179

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHR-- 355
            R  ++++ R ++D M+     PT  TYN V+    +A       + +   F +M+H   
Sbjct: 180 ARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPS 239

Query: 356 -GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++P+  TY +L++A +   L  + + +LR +  + V+ DT  +  I+ A+  AG++ +
Sbjct: 240 PSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSR 299

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
           + ELF  M      PD   +  +++A+  +G T  A  +  +M A
Sbjct: 300 VAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQA 344



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
            + +T L+  LG     E+A + F +M   G  P+++ Y AL +A+ + GL  EA +  +
Sbjct: 455 AKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFS 514

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
            M + +  + D  ++  LI++  +  + D   K   EM          +   +++ Y  A
Sbjct: 515 RMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIA 574

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
              +E +  F  + +S    P I     M+S Y       + ++W + ++L+
Sbjct: 575 GVIDESKEQFEEL-QSMVTVPSIIAYCMMLSLYA------RNDRWTDAYDLL 619


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 168/362 (46%), Gaps = 4/362 (1%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A+++F  +++   Y    + +T L+ +  K  + E+A  + + M   G   +V  YT  +
Sbjct: 253 AIRLFDEMKENGLYPT-AKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWI 311

Query: 157 SAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
              G++G +D+A+    DM  + D CKPDV   + LI    K  R ++  K+  +M    
Sbjct: 312 KGLGKAGRVDDAYRVFLDM--IKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQ 369

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
            + + VTYNT+I    + K      +S+   ++  G  P  FT + +I  +  +  IEK 
Sbjct: 370 CKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKA 429

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                E +  G          L  S G+   Y+    +   +++     +   Y ++I+ 
Sbjct: 430 LLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKH 489

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           FGK G + +  + F +M+  G KP+   Y +L+S   +AG+I +  S+LR ++ +    D
Sbjct: 490 FGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPD 549

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
               N I++   + G  ++  E+F  MK     PD +++ T++   +  G+ E A  L  
Sbjct: 550 LNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMR 609

Query: 456 KM 457
           +M
Sbjct: 610 EM 611



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 2/342 (0%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
            ++++ +LGK K   +A  +F  +     KP+   Y +++    Q G L++     N+M 
Sbjct: 166 LSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMC 225

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +  +C PD  TYS LI +  K   +D   ++  EM   G+  +A  Y T++  Y K  K 
Sbjct: 226 NDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKV 285

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E+       M +  GC   +FT    I   G +G ++   + + +    G K D+  +N 
Sbjct: 286 EKALDVIKEM-KDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINS 344

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHR 355
           L    G+ G  +    +   M+     P VVTYN VI+  F       +   +F+KMK  
Sbjct: 345 LINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGC 404

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P+S TY  L+  + K   I K   +L +++          +  +I++ G+    E  
Sbjct: 405 GIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAA 464

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            ELFL +KE         +A MI+ +   G    A +L N+M
Sbjct: 465 NELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEM 506



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 38/332 (11%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T+ +  LGK  + + A  +F  M+ DG KP V +  +L++  G+ G L+        M
Sbjct: 306 TYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKM 365

Query: 176 KSVSDCKPDV------------------------------------YTYSILIKSCTKFH 199
           +S   CKP+V                                    +TYSILI    K +
Sbjct: 366 ESWQ-CKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTN 424

Query: 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 259
           R +    +L EM   G       Y ++I+  GK K++E     F  + E+ G H      
Sbjct: 425 RIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCG-HSSARVY 483

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
             MI  +G  G + +    +NE   +G K D+   N L     RAGM D+ +S++  M +
Sbjct: 484 AVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDE 543

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
               P + ++NI++    + G  ++  E F KMK   +KP++++Y +++   S AGL  +
Sbjct: 544 NGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEE 603

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
              ++R++       +   +  I+ A G+  +
Sbjct: 604 AAKLMREMNLKGFEYNNITYTSILEAVGKVDE 635



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 130/307 (42%), Gaps = 1/307 (0%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + AL+ +  ++G   E + TI DM   S C       S ++K   K    +    +  ++
Sbjct: 130 FMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQI 189

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
                + +A TYN++I    +    E++   ++ M   G C PD  T +++ISA+G  G+
Sbjct: 190 KGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGH 249

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +   + ++E    G+    +    L   Y +    +K   V+  M+ +    TV TY  
Sbjct: 250 YDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTE 309

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            I+  GKAG ++     F  M   G KP+ +   SL++   K G +     + R++E+  
Sbjct: 310 WIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQ 369

Query: 392 VILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +   +N +I A  +      +    F  MK     P + T++ +I  +      E A
Sbjct: 370 CKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKA 429

Query: 451 QNLENKM 457
             L  +M
Sbjct: 430 LLLLEEM 436



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 21/248 (8%)

Query: 231 GKAKKFEEMESSFSA--------------------MVESGGCHPDIFTLNSMISAYGNSG 270
           GK + FE   SSF A                    MV S  C      L+ ++   G + 
Sbjct: 118 GKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAK 177

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTY 329
            + K    + +      K    T N +     + G  +K+  + + M      FP  VTY
Sbjct: 178 MVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTY 237

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           + +I  FGK GH +     F +MK  G+ P +  Y +L+  Y K   + K   +++++++
Sbjct: 238 SALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKD 297

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
               L    +   I   G+AG V+    +FL M +  C PD +   ++I     +G  E 
Sbjct: 298 KGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEV 357

Query: 450 AQNLENKM 457
              L  KM
Sbjct: 358 TLKLFRKM 365



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
           L+ + K  G+A M +K  SV   ++ R   P   TYN +I    + GH+EK+ E + +M 
Sbjct: 166 LSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMC 225

Query: 354 HRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           + G   P+++TY +L+SA+ K G       +  +++ + +      +  ++  Y +   V
Sbjct: 226 NDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKV 285

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           EK  ++   MK++ C     T+   I+     G  + A  +   MI
Sbjct: 286 EKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMI 331


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 161/344 (46%), Gaps = 2/344 (0%)

Query: 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169
           Y+    TF  L+  L    +  +A +L + M+ +G +P V  Y ++V+   +SG    A 
Sbjct: 154 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLAL 213

Query: 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
             +  M+   + K DV+TYS +I S  +    D    +  EM   GI+ S VTYN+++ G
Sbjct: 214 DLLRKMEE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
             KA K+ +       MV S    P++ T N ++  +   G +++  + Y E    G+  
Sbjct: 273 LCKAGKWNDGALLLKDMV-SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I T N L   Y       +  +++D M +    P +VT+  +I+ +     ++   + F
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVF 391

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
           + +  RG+  N++TY  LV  + ++G I   + + +++ +  V+ D   +  ++      
Sbjct: 392 RNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDN 451

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           G +EK  E+F  +++       + + T+I+     G  E A NL
Sbjct: 452 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 39/358 (10%)

Query: 103 LLRQQQWYQARCQTFTKLMVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160
           LLR+ +    +   FT   ++   C+    + A  LF+ M + G+K SV  Y +LV    
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
           ++G  ++    + DM S  +  P+V T+++L+    K  +     ++  EM   GI  + 
Sbjct: 275 KAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNI 333

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG------------- 267
           +TYNT++DGY    +  E  +    MV +  C PDI T  S+I  Y              
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 268 ----------------------NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
                                  SG I+  E+ + E    GV  D+ T  IL       G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             +K   + + +QK      +V Y  +IE   K G +E     F  +  +G+KPN +TY 
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
            ++S   K G + + + +LR++E      +   +N +I A+ + GD+    +L   MK
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + + A  LF+ M+     PS+  ++   SA  ++   +        ++ ++    ++YT 
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 126

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +I+I    +  +      +L ++  LG E    T+NT+I G     K  E       MVE
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 249 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 277
           +G C PD+ T NS+++    SG+       + KME+                        
Sbjct: 187 NG-CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 278 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
                + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T+N+++
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393
           + F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  +  +   
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  + A+ L
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 454 ENKMIA 459
             +M++
Sbjct: 426 FQEMVS 431



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           LD      K + AL+IF  L Q+         +T ++  + K  + E A  LF  +   G
Sbjct: 445 LDGLCDNGKLEKALEIFEDL-QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           +KP+V  YT ++S   + G L EA   +  M+   +  P+  TY+ LI++  +       
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN-APNDCTYNTLIRAHLRDGDLTAS 562

Query: 205 EKILAEMSYLGIECSAVTYNTIID 228
            K++ EM   G    A +   +ID
Sbjct: 563 AKLIEEMKSCGFSADASSIKMVID 586


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 159/344 (46%), Gaps = 2/344 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +++  LM  L +  +  +A  L   M   G  P V  YT ++  Y   G L +    + +
Sbjct: 111 ESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKE 170

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+ +   KP++YTYS +I    K  +    EK+L EM   G+    V Y T+IDG+ K  
Sbjct: 171 MQ-LKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLG 229

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             +     FS M E+    PD    +++I     SG + + +K +NE    G + D  T 
Sbjct: 230 NTQAAYKLFSEM-EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTY 288

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             L   Y + G   K   + + M +    P VVTY  + +   K+G ++   E   +M  
Sbjct: 289 TALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR 348

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +G++ N  TY ++V+   KAG I++   ++ +++ + +  DT  +  ++ AY + G++ K
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVK 408

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             EL   M +R   P  +TF  ++      G  E  + L   M+
Sbjct: 409 ARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWML 452



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 163/366 (44%), Gaps = 5/366 (1%)

Query: 65  EKKVSSKKYKNLWPKPVL--EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMV 122
           EK +     + ++P  V+    +D   K    Q A K+F  +  ++        F+ L+ 
Sbjct: 200 EKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSI-AFSALIC 258

Query: 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
            L    +  +A  LF  M+  G +P    YTAL+  Y + G + +AF   N M  +    
Sbjct: 259 GLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIG-LT 317

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+V TY+ L     K    D   ++L EM   G++ +  TYNTI++G  KA    +    
Sbjct: 318 PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKL 377

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M E+G  HPD  T  +++ AY  +G + K  +   E    G++  + T N+L     
Sbjct: 378 MEEMKEAG-LHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLC 436

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
            +G  +    ++ +M ++   P   TYN +++ +    ++    E ++ M  +G+ P+S 
Sbjct: 437 MSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSN 496

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  L+  + KA  + +   + +++      L    +N +I  + +   + +  +LF  M
Sbjct: 497 TYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556

Query: 423 KERHCV 428
           +    V
Sbjct: 557 RREGLV 562



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 162/338 (47%), Gaps = 9/338 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++ ++++L K  +  +   +   M+  G+ P   +YT L+  + + G    A+   ++M
Sbjct: 182 TYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEM 241

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++  +  PD   +S LI   +   +    +K+  EM   G E   VTY  +IDGY K   
Sbjct: 242 EA-REIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCK--- 297

Query: 236 FEEMESSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             EM+ +F   + MV+ G   P++ T  ++      SG ++   +  +E    G++ +I 
Sbjct: 298 LGEMKKAFFLHNQMVQIG-LTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIS 356

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N +     +AG   +   +M+ M++    P  +TY  +++ + K G + K  E  ++M
Sbjct: 357 TYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREM 416

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
             RG++P  +T+  L++    +G +   + +L+ +    ++ +   +N I+  Y    ++
Sbjct: 417 LDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNM 476

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 449
               E++  M  +  VPD+ T+  +I+ +  A  M EA
Sbjct: 477 RISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEA 514



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
           H FD+  ++L E   L                 +A+KF +   ++   + +G C+  +  
Sbjct: 40  HVFDVFFQVLVEAGLLN----------------EARKFFDKLLNYGVALSAGSCNLYLTC 83

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
           L+S     G       + K ++EF  +GV  + ++ NIL  S  R G   +   ++  M+
Sbjct: 84  LSSKRDMLG------MVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRME 137

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
            +   P VV+Y  +I+ +   G ++K+ +  K+M+ +G+KPN  TY S++    K+G ++
Sbjct: 138 FKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVV 197

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           + + +LR++    V  D   +  +I  + + G+ +   +LF  M+ R  VPD+I F+ +I
Sbjct: 198 EGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALI 257

Query: 439 QAYNALGMTEAAQNLENKMI 458
              +  G    A  L N+MI
Sbjct: 258 CGLSGSGKVVEADKLFNEMI 277



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 141/315 (44%), Gaps = 17/315 (5%)

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC--------TKFHRFD 202
           V+        ++GLL+EA    + + +        Y  ++   SC        +K     
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLN--------YGVALSAGSCNLYLTCLSSKRDMLG 92

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
           ++ K+ +E   LG+  +  +YN +++   +  K  E       M E  GC PD+ +  ++
Sbjct: 93  MVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRM-EFKGCIPDVVSYTTI 151

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           I  Y + G ++K+ +   E  L G+K ++ T + +     ++G   +   V+  M KR  
Sbjct: 152 IDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGV 211

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
           FP  V Y  +I+ F K G+ +   + F +M+ R + P+SI + +L+   S +G +++ D 
Sbjct: 212 FPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADK 271

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +  ++       D   +  +I  Y + G+++K   L   M +    P+ +T+  +     
Sbjct: 272 LFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLC 331

Query: 443 ALGMTEAAQNLENKM 457
             G  + A  L ++M
Sbjct: 332 KSGELDTANELLHEM 346


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 157/354 (44%), Gaps = 6/354 (1%)

Query: 98  LKIFGLLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L +F  +R       R    T+  L+         +Q+ +L   ML  G+ P    Y  +
Sbjct: 233 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHI 292

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           V A+  +G L  A    ++M +      D   Y  L+++ T+         +L +M   G
Sbjct: 293 VDAFASAGNLSRAAELFSEMAATGHTA-DASAYLGLMEAHTRVGATADAVAVLRQMQADG 351

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              +A TY  ++D YG+  +F+ +   F  M  +    PD  T N +   +G+ G  +++
Sbjct: 352 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFKEV 409

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + +++    GV+ D+ T   +  + G  G++   R V+++M +    PT   Y  ++E 
Sbjct: 410 VELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 469

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            G A   E+    F  M   G  P   TY +L  AY++ GL  + ++I  ++ N+  I  
Sbjct: 470 LGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQK 529

Query: 396 T-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   F+ +I AY Q   ++   + ++ M++    PD  +   ++ AY   G+ +
Sbjct: 530 SKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 583



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 167/369 (45%), Gaps = 12/369 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L++F  +++Q W +        ++ +LG+ + P       EV      +   
Sbjct: 115 RRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVFHDLPAESRT 173

Query: 150 DV-YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR----FDLI 204
            + YT+L++AY ++ L +EA + ++ MK+ +   P   TY+ ++ +C +       FD++
Sbjct: 174 ALSYTSLIAAYARNALHEEARALLDQMKA-TGVAPTAATYNTVLAACARATDPPVPFDML 232

Query: 205 EKILAEMSYLG---IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
             + AEM +     +     TYNT++         ++ E     M+E+ G  PD  +   
Sbjct: 233 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA-GVSPDTVSYRH 291

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++ A+ ++GN+ +  + ++E    G  AD      L +++ R G      +V+  MQ   
Sbjct: 292 IVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADG 351

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             PT  TY ++++ +G+ G  + + + F++M+   + P++ TY  L   +   G   +V 
Sbjct: 352 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFKEVV 410

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   +  + V  D      +++A G  G      E+   M     VP    +  +++A 
Sbjct: 411 ELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEAL 470

Query: 442 NALGMTEAA 450
               M E A
Sbjct: 471 GHAAMYEEA 479



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 164

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             L  E  +A++Y ++I  Y +    EE  +    M ++ G  P   T N++++A   + 
Sbjct: 165 HDLPAESRTALSYTSLIAAYARNALHEEARALLDQM-KATGVAPTAATYNTVLAACARAT 223

Query: 271 N----IEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     + +   + E        V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 224 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 283

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  V+Y  +++ F  AG++ +  E F +M   G   ++  Y  L+ A+++ G      ++
Sbjct: 284 PDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAV 343

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ++          +  ++  YG+ G  + + +LF  M+     PD  T+  + + +  
Sbjct: 344 LRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGD 402

Query: 444 LGMTEAAQNLENKMI 458
            G  +    L + M+
Sbjct: 403 GGFFKEVVELFHDML 417



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSY 301
           F  M     C PD      +I   G  G    ++K    F+ +  ++    +   L  +Y
Sbjct: 126 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFHDLPAESRTALSYTSLIAAY 184

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHRG- 356
            R  ++++ R+++D M+     PT  TYN V+    +A       + +   F +M+H   
Sbjct: 185 ARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDAS 244

Query: 357 --MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++P+  TY +L++A +   L  + + +L  +  + V  DT  +  I+ A+  AG++ +
Sbjct: 245 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 304

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             ELF  M       D   +  +++A+  +G T  A  +  +M A
Sbjct: 305 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 349



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 112/304 (36%), Gaps = 40/304 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +M   G       A  + E M  +G+ P+ D YT LV A G + + +EA+   N M
Sbjct: 427 TCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMM 486

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +                                    G   +  TYN +   Y +   
Sbjct: 487 TEI------------------------------------GSLPTLETYNALAFAYARGGL 510

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  + G      + +++I AY     ++   K Y E        D ++L 
Sbjct: 511 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 570

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-H 354
            +  +Y  AG+ D+ +   + +Q     P+V+ Y +++  + +        +  ++MK +
Sbjct: 571 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTN 630

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA---YGQAGD 411
           R    + +    +   Y  +     V+ +L             FFN ++     +GQ G 
Sbjct: 631 RASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGR 690

Query: 412 VEKM 415
             ++
Sbjct: 691 AARV 694


>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73710-like [Cucumis sativus]
          Length = 1026

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 150/321 (46%), Gaps = 7/321 (2%)

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           ++  Y   GLLD A   +   +  ++  P + + +I+     K   F+     L +    
Sbjct: 467 VIKMYINEGLLDRAKILLEKYRLDTELSPRI-SAAIIDAYAEKGLWFEAESIFLWKRDLA 525

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 274
           G +   + YN +I  YGKA+ +E+    F +M ++ G  PD  T NS+I  +     +++
Sbjct: 526 GKKXDVMEYNVMIKAYGKAELYEKAFLLFKSM-KNRGTWPDECTYNSLIQMFSGGDLVDE 584

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
             +   E   MG K   QT + +  SY R G+      V D M      P  + Y +++ 
Sbjct: 585 ARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVN 644

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
            F + G  E+  +YF+ M+  G+  N I   SL+ A+SK G +     I  +++N +   
Sbjct: 645 GFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGA 704

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAA 450
           DT   N +I+ Y   G V +  ++F  ++ER    D ++FATMI  Y  +GM     E A
Sbjct: 705 DTIASNSMINLYADLGMVSEAKQVFEDLRERG-YADGVSFATMIYLYKNIGMLDEAIEVA 763

Query: 451 QNLENKMIAMKENSGKKLIQC 471
           + ++   +     S +K+I+C
Sbjct: 764 EEMKESGLLRDATSFRKVIEC 784



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 157/352 (44%), Gaps = 8/352 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++   G      +A  L   M   GL P    Y   +S Y   G +D A      +
Sbjct: 358 TFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRI 417

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + V    PDV T+  L+   ++ +  + +E ++AEM    I     +   +I  Y     
Sbjct: 418 REVG-LFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGL 476

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG---NIEKMEKWYNEFNLMGVKADIQ 292
            +  +             P I    ++I AY   G     E +  W  + +L G K D+ 
Sbjct: 477 LDRAKILLEKYRLDTELSPRISA--AIIDAYAEKGLWFEAESIFLW--KRDLAGKKXDVM 532

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
             N++ K+YG+A +Y+K   +   M+ R  +P   TYN +I+ F     +++      +M
Sbjct: 533 EYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEM 592

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G KP   T+ +++++Y++ GL+     +   + ++DV  +   +  +++ + + G  
Sbjct: 593 QRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQA 652

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
           E+  + F  M++     + I   ++I+A++ +G  E A+ + N+M  M++ +
Sbjct: 653 EEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGA 704



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 189/422 (44%), Gaps = 25/422 (5%)

Query: 51  LSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWY 110
           L  ILR+  +  +I   +SS   +NL PK     L E   Q +W+  +++F   + Q+ Y
Sbjct: 102 LPSILRSLKSASDIGSILSSS-CQNLSPKEQTVILKE---QSRWERVIQVFQWFKSQKDY 157

Query: 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170
                 +  ++  LG+ ++ ++  L +  M  +G+ P+ + Y  L+  YG+ GL+ EA  
Sbjct: 158 VPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEALL 217

Query: 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
            I  M +V    PD  T + +++       FD  +K   +     +E +    N+ ++ +
Sbjct: 218 WIKHM-TVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDF 276

Query: 231 GKAKKFEEMESSFSAMVE---------SGGCHPDI----------FTLNSMISAYGNSGN 271
           G     E +        E         +    P++           T N++I  YG +G 
Sbjct: 277 GVNSAVEPITPKHFCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGR 336

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
           ++     + E    G+  D  T N +  + G  G   +  +++  M++R   P   TYNI
Sbjct: 337 LKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNI 396

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
            +  +   G+I+   + +++++  G+ P+ +T+ +L+   S+  ++  V++++ ++E S 
Sbjct: 397 FLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSH 456

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           ++LD      +I  Y   G +++   L    +    +   I+ A +I AY   G+   A+
Sbjct: 457 ILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRIS-AAIIDAYAEKGLWFEAE 515

Query: 452 NL 453
           ++
Sbjct: 516 SI 517



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/492 (21%), Positives = 199/492 (40%), Gaps = 83/492 (16%)

Query: 47  AEKDLSKILRTEFAIKNIEK-----------KVSSKKYK---NLWPKPVLEALDEAIKQK 92
           AE + S IL  E ++  + K           K+  +KY+    L P+     +D   ++ 
Sbjct: 450 AEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKG 509

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
            W  A  IF   R     +     +  ++   GK +  E+A LLF+ M + G  P    Y
Sbjct: 510 LWFEAESIFLWKRDLAGKKXDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTY 569

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
            +L+  +    L+DEA   + +M+ +   KP   T+S +I S  +        ++   M 
Sbjct: 570 NSLIQMFSGGDLVDEARRLLTEMQRMG-FKPTCQTFSAVIASYARLGLMSDAVEVYDMMV 628

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272
           +  +E + + Y  +++G+ +  + EE    F  M +SG     I  L S+I A+   G++
Sbjct: 629 HADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQI-VLTSLIKAFSKVGSL 687

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-----FPTVV 327
           E   + YN    M   AD    N +   Y   GM  + + V + +++R +     F T++
Sbjct: 688 EDARRIYNRMKNMEDGADTIASNSMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMI 747

Query: 328 -----------------------------TYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                                        ++  VIE +   G + +  E   +M  R + 
Sbjct: 748 YLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLL 807

Query: 359 PNSITYCSLVS-----------------------AYSKAGLIMKVDSIL----RQVENSD 391
           P++ T+  L +                        Y++  +I  V S L      +E+ D
Sbjct: 808 PDNRTFNVLFTILKKGVIPLEAVSQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCD 867

Query: 392 VIL------DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             L      D+  +N  I AYG A  ++K   +F+ MK+++  PD +T+  ++  Y   G
Sbjct: 868 TFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAG 927

Query: 446 MTEAAQNLENKM 457
           M E  + + +++
Sbjct: 928 MIEGVKQIYSQL 939



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 36/314 (11%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           Q E+A   F +M   G+  +  V T+L+ A+ + G L++A    N MK++ D   D    
Sbjct: 651 QAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMED-GADTIAS 709

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           + +I            +++  ++   G     V++ T+I  Y      +E       M E
Sbjct: 710 NSMINLYADLGMVSEAKQVFEDLRERGY-ADGVSFATMIYLYKNIGMLDEAIEVAEEMKE 768

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL----------- 297
           SG    D  +   +I  Y  +G + +  +  +E     +  D +T N+L           
Sbjct: 769 SGLLR-DATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPL 827

Query: 298 ------------TKSYGRA----------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
                        K+Y R           G++       D   K         YN+ I  
Sbjct: 828 EAVSQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYA 887

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
           +G A  I+K    F KMK + +KP+ +TY +LV  Y KAG+I  V  I  Q++  ++ L+
Sbjct: 888 YGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELN 947

Query: 396 TPFFNCIISAYGQA 409
              F  II+ +  A
Sbjct: 948 KSLFFAIINTFRSA 961


>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 616

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 159/358 (44%), Gaps = 6/358 (1%)

Query: 94  WQLALKIFGLLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           + + L +F  +R       R    T+  L+         +Q+ +L   ML  G+ P    
Sbjct: 229 FDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVS 288

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           Y  +V A+  +G L  A    ++M +      D   Y  L+++ T+         +L +M
Sbjct: 289 YRHIVDAFASAGNLSRAAELFSEMAATGHTA-DASAYLGLMEAHTRVGATADAVAVLRQM 347

Query: 212 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271
              G   +A TY  ++D YG+  +F+ +   F  M  +    PD  T N +   +G+ G 
Sbjct: 348 QADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGF 405

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            +++ + +++    GV+ D+ T   +  + G  G++   R V+++M +    PT   Y  
Sbjct: 406 FKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTG 465

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           ++E  G A   E+    F  M   G  P   TY +L  AY++ GL  + ++I  ++ N+ 
Sbjct: 466 LVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNA 525

Query: 392 VILDT-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
            I  +   F+ +I AY Q   ++   + ++ M++    PD  +   ++ AY   G+ +
Sbjct: 526 GIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 583



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 169/376 (44%), Gaps = 12/376 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L++F  +++Q W +        ++ +LG+ + P       EV      +   
Sbjct: 115 RRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVFHDLPAESRT 173

Query: 150 DV-YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR----FDLI 204
            + YT+L++AY ++ L +EA + ++ MK+ +   P   TY+ ++ +C +       FD++
Sbjct: 174 ALSYTSLIAAYARNALHEEARALLDQMKA-TGVAPTAATYNTVLAACARATDPPVPFDML 232

Query: 205 EKILAEMSY---LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
             + AEM +     +     TYNT++         ++ E     M+E+ G  PD  +   
Sbjct: 233 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA-GVSPDTVSYRH 291

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++ A+ ++GN+ +  + ++E    G  AD      L +++ R G      +V+  MQ   
Sbjct: 292 IVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADG 351

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             PT  TY ++++ +G+ G  + + + F++M+   + P++ TY  L   +   G   +V 
Sbjct: 352 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFKEVV 410

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   +  + V  D      +++A G  G      E+   M     VP    +  +++A 
Sbjct: 411 ELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEAL 470

Query: 442 NALGMTEAAQNLENKM 457
               M E A    N M
Sbjct: 471 GHAAMYEEAYVAFNMM 486



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 164

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             L  E  +A++Y ++I  Y +    EE  +    M ++ G  P   T N++++A   + 
Sbjct: 165 HDLPAESRTALSYTSLIAAYARNALHEEARALLDQM-KATGVAPTAATYNTVLAACARAT 223

Query: 271 N----IEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     + +   + E        V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 224 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 283

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  V+Y  +++ F  AG++ +  E F +M   G   ++  Y  L+ A+++ G      ++
Sbjct: 284 PDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAV 343

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ++          +  ++  YG+ G  + + +LF  M+     PD  T+  + + +  
Sbjct: 344 LRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGD 402

Query: 444 LGMTEAAQNLENKMI 458
            G  +    L + M+
Sbjct: 403 GGFFKEVVELFHDML 417



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSY 301
           F  M     C PD      +I   G  G    ++K    F+ +  ++    +   L  +Y
Sbjct: 126 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFHDLPAESRTALSYTSLIAAY 184

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHRG- 356
            R  ++++ R+++D M+     PT  TYN V+    +A       + +   F +M+H   
Sbjct: 185 ARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDAS 244

Query: 357 --MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++P+  TY +L++A +   L  + + +L  +  + V  DT  +  I+ A+  AG++ +
Sbjct: 245 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 304

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             ELF  M       D   +  +++A+  +G T  A  +  +M A
Sbjct: 305 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 349



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 36/223 (16%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +M   G       A  + E M  +G+ P+ D YT LV A G + + +EA+   N M
Sbjct: 427 TCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMM 486

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                               T+      +E                TYN +   Y +   
Sbjct: 487 --------------------TEIGSLPTLE----------------TYNALAFAYARGGL 510

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  + G      + +++I AY     ++   K Y E        D ++L 
Sbjct: 511 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 570

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
            +  +Y  AG+ D+ +   + +Q     P+V+ Y +++  + +
Sbjct: 571 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYAR 613


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 1/280 (0%)

Query: 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243
           +V T+ ++I    K  +F     ++ +M   G   S +TYNTIIDGY KA K  + ++  
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303
             MV +   HP+  T N +I  +    N+   +K + E    G++ ++ T N L      
Sbjct: 288 KEMV-AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363
            G  D+   + D M      P VVTYN +I  F K   +++  E    +  RG+ PN IT
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVIT 406

Query: 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423
           + +L+ AY KAG +     +   + ++ V  +   +NC+I  + + G+V++  +L   M+
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 424 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463
                 D +T+  ++ A    G T  A  L ++M  +  N
Sbjct: 467 GNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLN 506



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 156/322 (48%), Gaps = 2/322 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +++ M+   +  +V  +  +++   + G   +A   + DMK+     P V TY+ +I   
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWG-FSPSVITYNTIIDGY 274

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  +    + +L EM    I  + +T+N +IDG+ + +     +  F  M +  G  P+
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM-QRQGLQPN 333

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           + T NS+I+   ++G +++     ++ + MG+K ++ T N L   + +  M  + R ++D
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            + KR   P V+T+N +I+ +GKAG ++        M   G+ PN  TY  L+  + + G
Sbjct: 394 DIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG 453

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            + +   + +++E + +  D   +N ++ A  + G+  K   L   M E    P ++T+ 
Sbjct: 454 NVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYN 513

Query: 436 TMIQAYNALGMTEAAQNLENKM 457
            +I  Y   G + AA N+   M
Sbjct: 514 ALIDGYFREGNSTAALNVRTLM 535



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 138/272 (50%), Gaps = 2/272 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+    + +    A  +FE M   GL+P+V  Y +L++    +G LDEA   + D 
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDK 359

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP+V TY+ LI    K        ++L ++   G+  + +T+NT+ID YGKA +
Sbjct: 360 MSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGR 419

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            ++     S M+++G C P++ T N +I  +   GN+++  K   E    G+KAD+ T N
Sbjct: 420 MDDAFLLRSMMLDTGVC-PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYN 478

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           IL  +  + G   K   ++D M +    P+ +TYN +I+ + + G+          M+ +
Sbjct: 479 ILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKK 538

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           G + N +TY  L+  +   G + + + +L ++
Sbjct: 539 GRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 570



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 166/346 (47%), Gaps = 8/346 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L K  + ++A  + E M + G  PSV  Y  ++  Y ++G + +A + + +M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            +     P+  T++ILI    +       +K+  EM   G++ + VTYN++I+G     K
Sbjct: 291 VA-KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGK 349

Query: 236 FEE---MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
            +E   ++   S M    G  P++ T N++I+ +     +++  +  ++    G+  ++ 
Sbjct: 350 LDEALGLQDKMSGM----GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVI 405

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T N L  +YG+AG  D    +   M      P V TYN +I  F + G++++  +  K+M
Sbjct: 406 TFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G+K + +TY  LV A  K G   K   +L ++    +      +N +I  Y + G+ 
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNS 525

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
                +   M+++    + +T+  +I+ +   G  E A  L N+M+
Sbjct: 526 TAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEML 571



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 15/327 (4%)

Query: 137 FEVMLSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMK---SVSDCKPDVYTYSI 190
             V+ S G   S+ +   LV AY ++G +D   E F    D     S   C P       
Sbjct: 148 LSVLGSWGCANSI-IVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNP------- 199

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           ++ S  K  R  ++E +  EM    I  + VT++ +I+G  K  KF++       M ++ 
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAW 258

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  P + T N++I  Y  +G + K +    E     +  +  T NIL   + R       
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           + V + MQ++   P VVTYN +I      G +++      KM   G+KPN +TY +L++ 
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
           + K  ++ +   +L  +    +  +   FN +I AYG+AG ++    L   M +    P+
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
             T+  +I  +   G  + A+ L  +M
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEM 465



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 5/264 (1%)

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTI---IDGYGKAKKFEEMESSFS-AMVESGGCHPDI 256
           F  I  +      L +  +A  YN I   +D + K   +       S +++ S GC   I
Sbjct: 101 FGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSI 160

Query: 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316
             ++ ++ AY  +G ++   + ++     G +    + N +  S  + G    + SV   
Sbjct: 161 I-VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKE 219

Query: 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376
           M +R     VVT+++VI    K G  +K  +  + MK  G  P+ ITY +++  Y KAG 
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436
           + K D++L+++    +  +   FN +I  + +  +V    ++F  M+ +   P+ +T+ +
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339

Query: 437 MIQAYNALGMTEAAQNLENKMIAM 460
           +I    + G  + A  L++KM  M
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGM 363



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 307 YDKMRSVMDFMQKRFFFPTVVTY-----------------NIVIETFGKAGHIEKMEEYF 349
           Y+K+R+++D   K   +     +                 ++++  + K G ++   E F
Sbjct: 123 YNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGF 182

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
            +    G + ++++   ++ +  K G I  V+S+ +++    + ++   F+ +I+   + 
Sbjct: 183 DRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKV 242

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461
           G  +K G++   MK     P  IT+ T+I  Y   G    A  L  +M+A +
Sbjct: 243 GKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKR 294


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 157/323 (48%), Gaps = 3/323 (0%)

Query: 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177
           TKL+      +   +A  + E++   G +P V  Y AL++ + +   +D+A   ++ M+S
Sbjct: 124 TKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRS 182

Query: 178 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237
             D  PD  TY+I+I S     + DL  K+L ++     + + +TY  +I+        +
Sbjct: 183 -KDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVD 241

Query: 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297
           E       M+ S G  PD+FT N++I      G +++  +      L G + D+ + NIL
Sbjct: 242 EALKLLDEML-SRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNIL 300

Query: 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
            ++    G +++   +M  M      P VVTY+I+I T  + G IE+     K MK +G+
Sbjct: 301 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360

Query: 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417
            P++ +Y  L++A+ + G +      L  + +   + D   +N +++   + G  ++  E
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 420

Query: 418 LFLTMKERHCVPDNITFATMIQA 440
           +F  + E  C P++ ++ TM  A
Sbjct: 421 IFGKLGEVGCSPNSSSYNTMFSA 443



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 187/413 (45%), Gaps = 9/413 (2%)

Query: 52  SKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAI----KQKKWQLALKIFGLLRQQ 107
           +K+++  F ++N+ K V   +    + +P + A +  I    K  +   A ++   +R +
Sbjct: 124 TKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK 183

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
             +     T+  ++  L    + + A  + + +LSD  +P+V  YT L+ A    G +DE
Sbjct: 184 D-FSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDE 242

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A   +++M S    KPD++TY+ +I+   K    D   +++  +   G E   ++YN ++
Sbjct: 243 ALKLLDEMLS-RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILL 301

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                  K+EE E   + M  S  C P++ T + +I+     G IE+           G+
Sbjct: 302 RALLNQGKWEEGEKLMTKMF-SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D  + + L  ++ R G  D     ++ M      P +V YN V+ T  K G  ++  E
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 420

Query: 348 YFKKMKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
            F K+   G  PNS +Y ++ SA +S    I  +  IL  V N  +  D   +N +IS  
Sbjct: 421 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNG-IDPDEITYNSMISCL 479

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            + G V+K  EL + M+     P  +T+  ++  +      E A ++ + M+ 
Sbjct: 480 CREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVG 532



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 1/211 (0%)

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G +PD+     +I  +    N+ K  +        G + D+   N L   + +    D  
Sbjct: 115 GYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDA 173

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
             V+D M+ + F P  VTYNI+I +    G ++   +   ++     +P  ITY  L+ A
Sbjct: 174 TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEA 233

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
               G + +   +L ++ +  +  D   +N II    + G V++  E+   ++ + C PD
Sbjct: 234 TMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPD 293

Query: 431 NITFATMIQAYNALGMTEAAQNLENKMIAMK 461
            I++  +++A    G  E  + L  KM + K
Sbjct: 294 VISYNILLRALLNQGKWEEGEKLMTKMFSEK 324


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 174/367 (47%), Gaps = 6/367 (1%)

Query: 93  KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152
           +++ A K+   LR++    +   +F  ++  LGK ++ ++A  LFEVM  D  +P+   Y
Sbjct: 334 RFEDAYKLLERLRERGCIPS-VVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTY 391

Query: 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212
             ++      G ++EA+  +++M+  S   P++ T +I++    K  + +   KI    S
Sbjct: 392 NIIIDMLCLGGRVEEAYRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGN 271
             G     VTY ++IDG GK  + +E    F  M+++G   +P ++T  S+I  +   G 
Sbjct: 451 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT--SLIRNFFIHGR 508

Query: 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331
            E   K + E    G K D+  LN       +AG  +K R + + ++   F P V +Y+I
Sbjct: 509 KEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 568

Query: 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391
           +I    KAG   +    F  MK +G   ++  Y ++V  + K+G + K   IL +++   
Sbjct: 569 LIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC 628

Query: 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451
           V      +  I+    +   +++   LF   K +    + + ++++I  +  +G  + A 
Sbjct: 629 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 688

Query: 452 NLENKMI 458
            +  +M+
Sbjct: 689 LILEEMM 695



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 148/325 (45%), Gaps = 3/325 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            +  +++  G   + E A  L E +   G  PSV  + ++++  G+   +DEA S    M
Sbjct: 321 AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM 380

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           K   D +P+  TY+I+I       R +   +IL EM +  +  + +T N ++D   KA+K
Sbjct: 381 KK--DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 438

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            EE    F +  + G C+PD  T  S+I   G  G +++  + + +    G  A+     
Sbjct: 439 LEEAYKIFESASQRG-CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT 497

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L +++   G  +    +   + +R   P +   N  ++   KAG +EK    F+ ++  
Sbjct: 498 SLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY 557

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G  P+  +Y  L+   +KAG   +  +I   ++     LD   +N ++  + ++G V K 
Sbjct: 558 GFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKA 617

Query: 416 GELFLTMKERHCVPDNITFATMIQA 440
            E+   MKE+   P   T+  ++  
Sbjct: 618 YEILEEMKEKCVQPTVATYGAIVDG 642



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 160/350 (45%), Gaps = 3/350 (0%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           Q    L   L + ++ + A L   VM     +P+   YT L+ A  ++   + A   +  
Sbjct: 145 QACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQ 204

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+ V   +  V+ ++ L+++  +  +      ++ E+    +E   V YN  ID +GKA 
Sbjct: 205 MQEVG-YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAG 263

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
             + M   F   +++ G  PD  +  SMI     +G + + E+ + +             
Sbjct: 264 NVD-MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAY 322

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
           N +   YG AG ++    +++ +++R   P+VV++N ++   GK   +++    F+ MK 
Sbjct: 323 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK- 381

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
           +  +PNS TY  ++      G + +   IL ++E++ +  +    N ++    +A  +E+
Sbjct: 382 KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE 441

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464
             ++F +  +R C PD +T+ ++I      G  + A  L  KM+    N+
Sbjct: 442 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNA 491



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 176/433 (40%), Gaps = 43/433 (9%)

Query: 56  RTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ 115
           R E A + +++   +  + NL    ++  +D   K +K + A KIF     Q+     C 
Sbjct: 403 RVEEAYRILDEMEHASLFPNLLTVNIM--VDRLCKARKLEEAYKIFESA-SQRGCNPDCV 459

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  LGK  Q ++A  LFE ML  G   +  VYT+L+  +   G  ++      ++
Sbjct: 460 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL 519

Query: 176 ------------KSVSDCK----------------------PDVYTYSILIKSCTKFHRF 201
                        +  DC                       PDV +YSILI   TK  + 
Sbjct: 520 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 579

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                I   M   G    A  YN ++DG+ K+ K  +       M E     P + T  +
Sbjct: 580 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGA 638

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++        +++    + E    G++ ++   + L   +G+ G  D+   +++ M K+ 
Sbjct: 639 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 698

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P V T+N +++   KA  I +    F+ MK     PN+ TY  L++   +     K  
Sbjct: 699 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 758

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
              + ++   ++ +   +  +IS   + G++     LF   K    +PD  +F  +I+  
Sbjct: 759 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIE-- 816

Query: 442 NALGMTEAAQNLE 454
              GM+ A + +E
Sbjct: 817 ---GMSNANRAME 826



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 114/240 (47%), Gaps = 1/240 (0%)

Query: 199 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258
           H    +EK+L EM+ LG          +     +A++ ++   + + M       P    
Sbjct: 123 HDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVM-RRLKFRPAFSA 181

Query: 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318
              +I A   +   E+  +   +   +G +  +     L ++  R G      +++D ++
Sbjct: 182 YTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVK 241

Query: 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
                P +V YN+ I+ FGKAG+++   ++F ++K +G+KP+ ++Y S++    KAG + 
Sbjct: 242 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLG 301

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438
           + + +  Q+E    +     +N +I  YG AG  E   +L   ++ER C+P  ++F +++
Sbjct: 302 EAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 361



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           ++ L+   GK  + ++A L+ E M+  GL P+V  + +L+ A  ++  ++EA      MK
Sbjct: 671 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 730

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
            +  C P+ YTYSILI    +  +++       +M   G+  + VTY T+I G  K    
Sbjct: 731 EMK-CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNI 789

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT--- 293
            +  S F     +GG  PD  + N++I    N+    +  + + E  L G + +I++   
Sbjct: 790 TDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCIS 848

Query: 294 -LNILTKS 300
            L+ L KS
Sbjct: 849 LLDALNKS 856



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 87/191 (45%)

Query: 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330
           ++  +EK   E  ++G     Q    L  +  RA   D     +  M++  F P    Y 
Sbjct: 124 DLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYT 183

Query: 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 390
           ++I    +A   E+  E  ++M+  G +     + +LV A ++ G +    +++ +V+ S
Sbjct: 184 VLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGS 243

Query: 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
            +  D   +N  I  +G+AG+V+   + F  +K +   PD++++ +MI      G    A
Sbjct: 244 CLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEA 303

Query: 451 QNLENKMIAMK 461
           + L  +M A +
Sbjct: 304 EELFAQMEAER 314



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 10/158 (6%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARC--QTFTKLMVMLGKCK--QPEQASLLFEVM 140
           LD  +K ++   AL  F     Q   + +C   T+T  +++ G C+  +  +A + ++ M
Sbjct: 710 LDALVKAEEINEALVCF-----QSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 764

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              GL P+V  YT ++S   + G + +A+S     K+     PD  +++ LI+  +  +R
Sbjct: 765 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANR 823

Query: 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
                ++  E    G   +  +  +++D   K++  E+
Sbjct: 824 AMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQ 861


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 4/333 (1%)

Query: 127 CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
           CK+   E A  LF  M   G  P +  Y +L+  +G+ GLLDE       MK  +DC PD
Sbjct: 266 CKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD-ADCDPD 324

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           V TY+ LI    KF R     + L EM   G++ + VTY+T ID + K    +E    F 
Sbjct: 325 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 384

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
            M       P+ FT  S+I A   +GN+ +  K   E    G+K ++ T   L       
Sbjct: 385 DM-RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 443

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G   +   V   M      P   TY  ++  F KA  +E  ++  K+MK + +KP+ + Y
Sbjct: 444 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 503

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
            +++        + +   ++ +++ S +  +   +  ++ AY ++G   +   L   M +
Sbjct: 504 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 563

Query: 425 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              +   +T+  +I      G+ + A +   +M
Sbjct: 564 LGLIATEVTYCALIDGLCKSGLVQEAMHHFGRM 596



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 8/314 (2%)

Query: 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206
           P   V+ AL SA  + G+L+EA      M+      P   + + L+   +K  R DL  K
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRKFR-VFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 207 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266
              +M   GI+ S  TYN +ID   K    E   S F+ M E+G   PDI T NS+I  +
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGF-TPDIVTYNSLIDGH 300

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFF 323
           G  G +++    + +        D+ T N L   + +   +++M    +F   M+     
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCK---FERMPKAFEFLHEMKANGLK 357

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P VVTY+  I+ F K G +++  ++F  M+   + PN  TY SL+ A  KAG + +   +
Sbjct: 358 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 417

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + ++  + + L+   +  ++    + G +++  E+F  M      P+  T+  ++  +  
Sbjct: 418 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 477

Query: 444 LGMTEAAQNLENKM 457
               E A+++  +M
Sbjct: 478 AKEMEYAKDILKEM 491



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 162/399 (40%), Gaps = 71/399 (17%)

Query: 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 187
           + P+    L E M ++GLKP+V  Y+  + A+ + G+L EA     DM+ V+   P+ +T
Sbjct: 340 RMPKAFEFLHE-MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA-LTPNEFT 397

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           Y+ LI +  K        K++ E+   GI+ + VTY  ++DG  +  + +E E  F AM+
Sbjct: 398 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML 457

Query: 248 ESG----------------------------------GCHPDIFTLNSMISAYGNSGNIE 273
            +G                                     PD+    +++    N   +E
Sbjct: 458 NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLE 517

Query: 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333
           + +    E    G+  +      L  +Y ++G   +  ++++ M       T VTY  +I
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALI 577

Query: 334 ETFGKAG-------HIEKMEE----------------------------YFKKMKHRGMK 358
           +   K+G       H  +M E                             F +M  +GM 
Sbjct: 578 DGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM 637

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           P+ I Y +L+    K G + +  ++  ++    + LD   +  +I     +G V+K   L
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNL 697

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              M  +  +PD + +  +I+ Y ALG  + A  L+N+M
Sbjct: 698 LDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 736



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 149/323 (46%), Gaps = 2/323 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F  L   L +    E+AS  F  M    + P      AL+    + G  D +     DM
Sbjct: 187 VFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM 246

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            + +  K  V+TY+I+I    K    ++   +  +M   G     VTYN++IDG+GK   
Sbjct: 247 GA-AGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGL 305

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +E    F  M +   C PD+ T N++I+ +     + K  ++ +E    G+K ++ T +
Sbjct: 306 LDECICIFEQM-KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYS 364

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
               ++ + GM  +       M++    P   TY  +I+   KAG++ +  +  +++   
Sbjct: 365 TFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA 424

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+K N +TY +L+    + G + + + + R + N+ V  +   +  ++  + +A ++E  
Sbjct: 425 GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA 484

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ++   MKE+   PD + + T++
Sbjct: 485 KDILKEMKEKCIKPDLLLYGTIL 507



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%)

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P     +++ SA    G +E+  + + +     V    ++ N L     + G  D  R
Sbjct: 181 CVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSR 240

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
                M       +V TYNI+I+   K G +E     F +MK  G  P+ +TY SL+  +
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            K GL+ +   I  Q++++D   D   +N +I+ + +   + K  E    MK     P+ 
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 360

Query: 432 ITFATMIQAYNALGMTEAA 450
           +T++T I A+   GM + A
Sbjct: 361 VTYSTFIDAFCKEGMLQEA 379



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 122 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G C +   E+A LL   +   G+  +  +YT L+ AY +SG   EA + + +M  + 
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
               +V TY  LI    K             MS +G++ +   Y  ++DG  K   FE  
Sbjct: 566 LIATEV-TYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVA 624

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
           +  F  M++ G   PD     ++I      GN+++     +    +G++ D+     L  
Sbjct: 625 KKLFDEMLDKG-MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIW 683

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 357
               +G   K R+++D M  +   P  V Y  +I+ +   G +++  E   +M  RGM
Sbjct: 684 GLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 22/249 (8%)

Query: 222 TYNTIIDGYGKAKKFEEMESSFSAMVESG---------------GCHPDIFTLNSMISAY 266
           T N  + G+G        ++ FSA++E G                  P   + N+++   
Sbjct: 177 TRNVCVPGFGV------FDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRL 230

Query: 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326
              G  +   K++ +    G+K  + T NI+     + G  +  RS+   M++  F P +
Sbjct: 231 SKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDI 290

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386
           VTYN +I+  GK G +++    F++MK     P+ ITY +L++ + K   + K    L +
Sbjct: 291 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 350

Query: 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 445
           ++ + +  +   ++  I A+ + G +++  + F+ M+     P+  T+ ++I A    G 
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 410

Query: 446 MTEAAQNLE 454
           + EA + +E
Sbjct: 411 LAEALKLVE 419


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 146/363 (40%), Gaps = 36/363 (9%)

Query: 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190
           E A  + E +   GL P+V  YT LV  Y + G ++EA   + +MK   D   D   Y +
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGM 329

Query: 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250
           +I    +  R D   ++  EM   GI  +   YNT+I+G  K  + EE++     M E  
Sbjct: 330 MINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM-EDV 388

Query: 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
           G  PD ++ N++I  Y   G++ K  +        G+ A   T N L K +      D  
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 311 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 335
             +   M KR   P                                    V+T+N VI  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
             K G + + EE   +MK     P+S+TY +L   Y K G +     ++ ++E+      
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455
              FN  I+ +  A    K+ ++   M  R   P+ +T+  +I  +   G    A NL  
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 456 KMI 458
           +M+
Sbjct: 629 EMV 631



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 158/378 (41%), Gaps = 36/378 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           ++  +L+  L +   P  A++++  M   G+ P       +  AY + G + +A   + +
Sbjct: 184 RSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEE 243

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+ +   + ++  Y  ++         +   +IL  +   G+  + VTY  ++ GY K  
Sbjct: 244 MEGMG-LEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDG 302

Query: 235 KFEEMESSFSAMVESG-----------------------------------GCHPDIFTL 259
           + EE E     M E+G                                   G H ++F  
Sbjct: 303 RMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVY 362

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319
           N+MI+     G +E+++K   E   +G++ D  + N L   Y R G   K   +   M +
Sbjct: 363 NTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVR 422

Query: 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379
                T +TYN +++ F     I+     +  M  RG+ PN I+  +L+    KAG   +
Sbjct: 423 NGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQ 482

Query: 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
             ++ ++     +  +   FN +I+   + G + +  EL   MKE  C PD++T+ T+  
Sbjct: 483 ALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFD 542

Query: 440 AYNALGMTEAAQNLENKM 457
            Y  LG    A +L NKM
Sbjct: 543 GYCKLGQLGTATHLMNKM 560



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 178/403 (44%), Gaps = 38/403 (9%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           L A+D+A++   W L LK     R     +  C T   L+  L K  + EQA  L++  L
Sbjct: 442 LHAIDDALRL--WFLMLK-----RGVAPNEISCST---LLDGLFKAGKTEQALNLWKETL 491

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           + GL  +V  +  +++   + G + EA   ++ MK +  C PD  TY  L     K  + 
Sbjct: 492 ARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELR-CPPDSLTYRTLFDGYCKLGQL 550

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
                ++ +M +LG   S   +N+ I G+  AK++ ++    S M  + G  P++ T  +
Sbjct: 551 GTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEM-SARGLSPNLVTYGA 609

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD------------- 308
           +I+ +   GN+ +    Y E    G+  ++   + L   + + G  D             
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNID 669

Query: 309 -------------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
                        K+  V+D +         V +N++I    K+G I   +  F+ ++++
Sbjct: 670 MIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNK 729

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              P++ TY SL+   + +G I +  S+   + ++ +  +   +N +I    ++G + + 
Sbjct: 730 RFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRA 789

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             LF  ++ +   P+ IT+ T+I  Y   G T  A  L+ KM+
Sbjct: 790 VNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMV 832



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 153/345 (44%), Gaps = 3/345 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +F  L+       Q   A  +F+ M   G +PS+     L++   QSG    A      M
Sbjct: 150 SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQM 209

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + ++   PD +T +I+ K+  +  R     + + EM  +G+E + V Y+ ++D Y     
Sbjct: 210 R-IAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTL 294
            E+      ++ +  G  P++ T   ++  Y   G +E+ E+   E    G +  D    
Sbjct: 269 TEDARRILESL-QRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAY 327

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
            ++   Y + G  D    V + M+       +  YN +I    K G +E++++  ++M+ 
Sbjct: 328 GMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMED 387

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
            GM+P+  +Y +L+  Y + G + K   + R +  + +   T  +N ++  +     ++ 
Sbjct: 388 VGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDD 447

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
              L+  M +R   P+ I+ +T++      G TE A NL  + +A
Sbjct: 448 ALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLA 492



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 156/365 (42%), Gaps = 34/365 (9%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G C++    +A  +  +M+ +GL  +   Y  L+  +     +D+A      M  + V+ 
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA- 461

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             P+  + S L+    K  + +    +  E    G+  + +T+NT+I+G  K  +  E E
Sbjct: 462 --PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300
                M E   C PD  T  ++   Y   G +       N+   +G    ++  N     
Sbjct: 520 ELLDRMKELR-CPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITG 578

Query: 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360
           +  A  + K+  +   M  R   P +VTY  +I  + K G++ +    + +M + GM PN
Sbjct: 579 HFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPN 638

Query: 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI----------------LDT-------- 396
                +L+S + K G + + + +L+++ N D+I                +DT        
Sbjct: 639 VFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHS 698

Query: 397 --PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 454
               +N II    ++G +     LF +++ +  +PDN T++++I    A G  + A +L 
Sbjct: 699 ANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLR 758

Query: 455 NKMIA 459
           + M++
Sbjct: 759 DVMLS 763



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 144/329 (43%), Gaps = 66/329 (20%)

Query: 122 VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178
           ++ G CK+    E  +L FE M+++G+ P+V + +AL+S + + G +DEA   +  + ++
Sbjct: 610 LIAGWCKEGNLHEACNLYFE-MVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 179 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
            D  P     +I I         D I  ++  ++      + V +N II G  K+ +  +
Sbjct: 669 -DMIPGCSISTIEI---------DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIAD 718

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
            +S F ++  +    PD FT +S+I     SG+I                          
Sbjct: 719 AKSLFESL-RNKRFLPDNFTYSSLIHGCAASGSI-------------------------- 751

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
                    D+  S+ D M      P ++TYN +I    K+G + +    F K++ +G+ 
Sbjct: 752 ---------DEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGIS 802

Query: 359 PNSITYCSLVSAYSK----------------AGLIMKVDSILRQVENSDVILDTPFFNCI 402
           PN ITY +L+  Y K                 G + +   +L Q+  ++V  +   +  +
Sbjct: 803 PNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTL 862

Query: 403 ISAYGQAGDVEKMGELFLTMKERHCVPDN 431
           I  Y ++G++E++ +L+  M  R  +P N
Sbjct: 863 IHGYIKSGNMEEISKLYDEMHIRGLLPTN 891


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 163/338 (48%), Gaps = 3/338 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T +++ L K ++   A+LL+E ++ + ++ S   Y  +++ Y + G  +EA      M
Sbjct: 348 TYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAM 407

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   PD   Y++++    K  R+D    +   M    +  S  +Y T++    KA K
Sbjct: 408 LG-AGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADK 466

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           FE   S FS M +   C  D     S+IS YG +G  ++ EK + E N + +  D++T +
Sbjct: 467 FELAASIFSDM-QMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFS 525

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           ++     +AG Y++   VM+ +  +        +  ++  + KAG++E+  + FK +   
Sbjct: 526 VMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVES 585

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  + + Y  ++S Y++  ++     + +Q+++S +  D  +F  ++  Y  A  V   
Sbjct: 586 GI-ADLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAA 644

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            E+   M+E+   PD+IT   +I AY      E A  L
Sbjct: 645 EEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAGL 682



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 159/338 (47%), Gaps = 15/338 (4%)

Query: 106  QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD----VYTALVSAYGQ 161
            Q + +     T   L+   GK  +       +EV+    LKP +     VY+++V A   
Sbjct: 754  QDKGFDVEDSTLGHLIAAYGKAGR-------YEVLTK--LKPELPRNNFVYSSMVGALIN 804

Query: 162  SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221
               L++A   +  M+ +   K D    SIL+ + +K    +  + ++      GI    V
Sbjct: 805  CNQLEKAAGLVEKMRQIG-LKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIV 863

Query: 222  TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281
             YNTII    +A + ++   ++S++   G   P + T ++MIS +  SG     EK + +
Sbjct: 864  AYNTIIKADLRAGRLKKAIDTYSSLTNLG-LRPSLQTYDTMISVFAKSGRTRDAEKMFKD 922

Query: 282  FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341
                G + D +  + +   Y ++GMY+    + + M+ R   P  V+YN +I+ + +AG 
Sbjct: 923  LKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQ 982

Query: 342  IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401
              K E+   +M   G  P+S+T+  L+SAY+  G   + ++ L +++ + +      +N 
Sbjct: 983  FAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNE 1042

Query: 402  IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
            ++ A+ +A    +  E +L M+     PD ++  TMI+
Sbjct: 1043 VMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIR 1080



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 145/346 (41%), Gaps = 50/346 (14%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
             + +L +   K  Q   A +L   M   G          L++AYG++G  +         
Sbjct: 729  AYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYE--------- 779

Query: 176  KSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
              ++  KP++    + YS ++ +    ++ +    ++ +M  +G++C +V  + +++ Y 
Sbjct: 780  -VLTKLKPELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYS 838

Query: 232  KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
            KA   E+ ++    M    G   DI   N++I A   +G ++K    Y+    +G++   
Sbjct: 839  KAGLVEDADALIH-MARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLR--- 894

Query: 292  QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
                                            P++ TY+ +I  F K+G     E+ FK 
Sbjct: 895  --------------------------------PSLQTYDTMISVFAKSGRTRDAEKMFKD 922

Query: 352  MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
            +K  G +P+   Y  +++ Y+K+G+      +   ++   +      +N +I AY +AG 
Sbjct: 923  LKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQ 982

Query: 412  VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              K  +L + M +  C P ++TF  +I AY   G    A+N   +M
Sbjct: 983  FAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERM 1028



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 161/402 (40%), Gaps = 38/402 (9%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150
           Q+ W+ A + F  ++ Q  Y      ++ L+ + G+ KQ   A   F+ ML   L P   
Sbjct: 253 QQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEV 312

Query: 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210
            ++ ++  Y  + + DE  +    M S     P   TY+ ++    K  R      +  +
Sbjct: 313 AFSTMILNYANAEMFDEMLTMYEAMMS-RGIVPSSVTYTTMLIHLNKAERLADAALLWED 371

Query: 211 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
           +    +E S + Y  +I  Y K  +FEE    F AM+   G +PD    N ++   G  G
Sbjct: 372 LVEESVELSPLAYALMITIYRKLGRFEEALEVFEAML-GAGYYPDSLIYNMVLHMLGKLG 430

Query: 271 N-----------------------------IEKMEKW------YNEFNLMGVKADIQTLN 295
                                          EK +K+      +++  +     D     
Sbjct: 431 RYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYT 490

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            +   YG+AG+YD+   +   M +      V T++++     KAG   +  +  +++  +
Sbjct: 491 SVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAK 550

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  +   + +L+  Y KAG + +     + +  S  I D   +N ++S Y +   +E  
Sbjct: 551 GLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESG-IADLMAYNDMLSLYAEFDMLEDA 609

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
             LF  +K     PD + F TM++ Y    M  AA+ +  +M
Sbjct: 610 KLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQM 651



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 148/340 (43%), Gaps = 11/340 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYG---QSGLLDEAFST 171
           TF +L  +L   +  ++A   F  M L     PSV VY+ L+  YG   Q GL + AF  
Sbjct: 242 TFRELCTVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQE 301

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
           + D K      PD   +S +I +      FD +  +   M   GI  S+VTY T++    
Sbjct: 302 MLDQK----LDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLN 357

Query: 232 KAKKFEEMESSFSAMVE-SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
           KA++  +    +  +VE S    P  + L  MI+ Y   G  E+  + +      G   D
Sbjct: 358 KAERLADAALLWEDLVEESVELSPLAYAL--MITIYRKLGRFEEALEVFEAMLGAGYYPD 415

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
               N++    G+ G YD+   V   MQ++    +  +Y  ++    KA   E     F 
Sbjct: 416 SLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFS 475

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            M+ +    + + Y S++S Y KAGL  + + + +++    +++D   F+ + +   +AG
Sbjct: 476 DMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAG 535

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450
              +  ++   +  +    D+  + T++  Y   G  E A
Sbjct: 536 KYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERA 575



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 5/293 (1%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P V  YS+L+K   +  +  L E    EM    ++   V ++T+I  Y  A+ F+EM + 
Sbjct: 274 PSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTM 333

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           + AM+ S G  P   T  +M+     +  +      + +     V+       ++   Y 
Sbjct: 334 YEAMM-SRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYR 392

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G +++   V + M    ++P  + YN+V+   GK G  ++  + F  M+ + +  +  
Sbjct: 393 KLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKY 452

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           +Y +++    KA       SI   ++     +D   +  +IS YG+AG  ++  +LF  M
Sbjct: 453 SYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEM 512

Query: 423 KERHCVPDNITFATMIQAYNALG-MTEAAQNLEN---KMIAMKENSGKKLIQC 471
            E   + D  TF+ M       G   EA Q +E    K + + + + K L+ C
Sbjct: 513 NELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHC 565



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 4/272 (1%)

Query: 99   KIFGLLRQQQWYQARCQTF--TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
            K  GL+ + +    +C +   + L+    K    E A  L  +   DG+   +  Y  ++
Sbjct: 810  KAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTII 869

Query: 157  SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
             A  ++G L +A  T + + ++   +P + TY  +I    K  R    EK+  ++   G 
Sbjct: 870  KADLRAGRLKKAIDTYSSLTNLG-LRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGF 928

Query: 217  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276
            +     Y+ +++ Y K+  +E     F AM +  G  P   + N++I AY  +G   K E
Sbjct: 929  QPDEKVYSQMMNCYAKSGMYEHAADLFEAM-KLRGLRPHEVSYNNLIDAYARAGQFAKAE 987

Query: 277  KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336
            +   E    G      T  +L  +Y   G  ++  + ++ MQ     PTV  YN V+  F
Sbjct: 988  QLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAF 1047

Query: 337  GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
             +A    +  E + KM+  G++P+ ++  +++
Sbjct: 1048 SRARLPSQAMESYLKMERSGIQPDVVSSRTMI 1079



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 28/327 (8%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 199
           M   G  P       L++AYG++  ++EA   +    S  + + +    S  I  C KF 
Sbjct: 651 MREKGFTPDHITQGILINAYGEANRIEEAAGLLE--ASAKEDESEAAAIS-RIYLCLKFR 707

Query: 200 RFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            FD    L+ ++L   +       +  YN +   + KA +    E   S M + G    D
Sbjct: 708 LFDKATLLLHRVLESFT-----LDSAAYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVED 762

Query: 256 IFTLNSMISAYGNSGNIEKMEKW-----YNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310
             TL  +I+AYG +G  E + K       N F    +   +   N L K+   AG+ +KM
Sbjct: 763 S-TLGHLIAAYGKAGRYEVLTKLKPELPRNNFVYSSMVGALINCNQLEKA---AGLVEKM 818

Query: 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370
           R +             V  +I++  + KAG +E  +      +  G+  + + Y +++ A
Sbjct: 819 RQI-------GLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTIIKA 871

Query: 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430
             +AG + K       + N  +      ++ +IS + ++G      ++F  +K     PD
Sbjct: 872 DLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPD 931

Query: 431 NITFATMIQAYNALGMTEAAQNLENKM 457
              ++ M+  Y   GM E A +L   M
Sbjct: 932 EKVYSQMMNCYAKSGMYEHAADLFEAM 958



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/138 (16%), Positives = 65/138 (47%)

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
           + P+V+ Y+++++ +G+   I   E  F++M  + + P+ + + +++  Y+ A +  ++ 
Sbjct: 272 YIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEML 331

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++   + +  ++  +  +  ++    +A  +     L+  + E       + +A MI  Y
Sbjct: 332 TMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIY 391

Query: 442 NALGMTEAAQNLENKMIA 459
             LG  E A  +   M+ 
Sbjct: 392 RKLGRFEEALEVFEAMLG 409


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 160/381 (41%), Gaps = 37/381 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +  QA  LF  M   G+ PS   YT L+  + +    + A+  +  M
Sbjct: 78  TYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLM 137

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S   C P VY+Y  +I    K  + D   ++  EM   G +   VTYNT+I G    ++
Sbjct: 138 AS-RKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQR 196

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             E +   + MVE+    PD  T  ++I     +  I++    +      G   D+ T  
Sbjct: 197 LHEAKDLLTVMVENSF-QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHT 255

Query: 296 ILT---------------------------------KSYGRAGMYDKMRSVMDFMQKRFF 322
           +L                                  +  GR   +D+   ++  M +R  
Sbjct: 256 VLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV 315

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P VVTY    +  G      +    F++M  +G++P+ + Y  LV  + KA  +   + 
Sbjct: 316 APNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEK 375

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           ++R ++ S +  +   +N ++  + + G VE +GEL  TM  R   PD  T++T++    
Sbjct: 376 MVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLF 435

Query: 443 ALGMTEAAQNLENKMIAMKEN 463
            +G  +AA +  N  +AM + 
Sbjct: 436 RVGQVDAAYSFLN--LAMSQG 454



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 7/260 (2%)

Query: 180 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239
           DCKP+  +Y  L+K+  +  + D     +AEM+   +     TYN +ID   KA++    
Sbjct: 5   DCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRA 64

Query: 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299
              F  M E     PD+ T N+++     +G + +    +      G+     T   L  
Sbjct: 65  IEFFETMPE-----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLID 119

Query: 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359
            + +   ++    ++  M  R   PTV +Y  +I    K   +++  + F++MK  G KP
Sbjct: 120 VFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKP 179

Query: 360 NSITYCSLVSAYS-KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
           + +TY +L+     K  L    D +   VENS    D   F  +I        +++   L
Sbjct: 180 DRVTYNTLIHGLCVKQRLHEAKDLLTVMVENS-FQPDKITFTALIEGLCTTDRIKEAFVL 238

Query: 419 FLTMKERHCVPDNITFATMI 438
           F  M ++ C PD +T   ++
Sbjct: 239 FQGMAKQGCAPDLVTHTVLV 258



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 134/336 (39%), Gaps = 43/336 (12%)

Query: 140 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM---KSVSD-----------CK--- 182
           + S   KP+   Y  LV A  ++G +D+A STI +M   K V D           CK   
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 183 -------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 229
                        PDV TY+ L+    K  R      +   M   GI  S VTY T+ID 
Sbjct: 61  ISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDV 120

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           + K  +FE        M  S  C P +++  S+I+    +  +++  + + E  L G K 
Sbjct: 121 FCKMCQFETAYGLLQLMA-SRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKP 179

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           D  T N L           + + ++  M +  F P  +T+  +IE       I++    F
Sbjct: 180 DRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLF 239

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVILDTPFFNCIIS 404
           + M  +G  P+ +T+  LV   SK  +  K+   L  V N       VIL TP F     
Sbjct: 240 QGMAKQGCAPDLVTHTVLV---SKLCIRRKLRPALSVVRNYPACPEAVILYTPIFR---- 292

Query: 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             G+    ++   L   M  R   P+ +T+    + 
Sbjct: 293 ELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKG 328



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  ++Y  +++   + G I+K      +M    + P+  TY  ++    KA  I +    
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
              +   DV+     +N ++    + G V +   LF +M+     P ++T+ T+I  +  
Sbjct: 68  FETMPEPDVVT----YNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 444 LGMTEAAQNLENKMIAMK 461
           +   E A  L   M + K
Sbjct: 124 MCQFETAYGLLQLMASRK 141


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 166/357 (46%), Gaps = 16/357 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T++K++  L +  + E+A LLF+ M S G+ P V  YT L+ ++ + GL+++A S  ++M
Sbjct: 457 TYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEM 516

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           +SV  C P V TY+ L+ +  K  +      I   M   G   + +TY+ ++DG  KA +
Sbjct: 517 ESVG-CSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGE 575

Query: 236 FEEMESSFSAMVESG----------GCH-----PDIFTLNSMISAYGNSGNIEKMEKWYN 280
            ++    ++ M+ +           G H     P++ T  ++I     +  +   ++  +
Sbjct: 576 SQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLD 635

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
             +  G + +    + L   + + G  D  + V   M K  + PTV TY  +I+   K  
Sbjct: 636 VMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDR 695

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400
            ++   +   +M      PN +TY +++    + G   K   +L  +E      +   + 
Sbjct: 696 RLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYT 755

Query: 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
            +I   G++G V+   +LF  M  + C P+ +T+  +I    A G+ + A +L ++M
Sbjct: 756 SLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 161/360 (44%), Gaps = 25/360 (6%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           F + +  +GK  +  Q   + ++M+  G  P    Y+ +++   ++  +++AF    +MK
Sbjct: 426 FARCLCGMGKFDKAFQ---IIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMK 482

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           SV    PDVYTY+ILI S  K    +       EM  +G   S VTY  ++  Y K K+ 
Sbjct: 483 SVG-VIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQV 541

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY-----------NEFNLM 285
            +    F  MV++G C P+  T ++++     +G  +K  + Y           ++F   
Sbjct: 542 PQASDIFHRMVDAG-CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFE 600

Query: 286 GVKADIQTLNILTKSYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
           G   D    N++T  YG       +A      + ++D M      P  + Y+ +I+ F K
Sbjct: 601 GEHTDSIAPNVVT--YGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCK 658

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
            G ++  +E F +M   G  P   TY SL+ A  K   +     +L Q+  S    +   
Sbjct: 659 VGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVT 718

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           +  +I    + G+ +K  +L   M++R C P+ +T+ ++I      G  + +  L  +MI
Sbjct: 719 YTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMI 778



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 158/335 (47%), Gaps = 21/335 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+  L K  +   A  L +VM S+G +P+  +Y AL+  + + G LD A      M
Sbjct: 613 TYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRM 672

Query: 176 KSVSDCK--PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
              S C   P V+TY+ LI +  K  R DL  K+L++M       + VTY  +IDG  + 
Sbjct: 673 ---SKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRI 729

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            + ++     S M+E  GC+P++ T  S+I   G SG ++   + + +    G   +  T
Sbjct: 730 GECQKALKLLS-MMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVT 788

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEY 348
             +L      AG+ D+  S++  M++ ++   V  Y  V++ F K      G +E++E +
Sbjct: 789 YRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESH 848

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI---LRQVENSDVILDTPFFNCIISA 405
                  GM   +  Y  L+ ++SKAG + K   +   + +V +S  I     +  +I A
Sbjct: 849 -------GMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQA 901

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
              A  +EK  EL+  +  +  VP+   F  +I+ 
Sbjct: 902 LCLASQLEKAFELYSEITRKGVVPELSAFICLIKG 936



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 52/376 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+    K KQ  QAS +F  M+  G  P+   Y+ALV    ++G   +A      M
Sbjct: 527 TYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKM 586

Query: 176 KSVSD---------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 220
              SD                 P+V TY  LI    K H+    +++L  MS  G E + 
Sbjct: 587 IGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNH 646

Query: 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280
           + Y+ +IDG+ K  K +  +  F  M + G   P + T  S+I A      ++   K  +
Sbjct: 647 IIYDALIDGFCKVGKLDNAQEVFFRMSKCGY-LPTVHTYTSLIDAMFKDRRLDLAIKVLS 705

Query: 281 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 340
           +        ++ T   +     R G   K   ++  M+KR   P VVTY  +I+  GK+G
Sbjct: 706 QMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSG 765

Query: 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS------------------ 382
            ++   + F +M  +G  PN +TY  L++    AGL+ +  S                  
Sbjct: 766 KVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYC 825

Query: 383 ---------------ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
                          +L ++E+  ++   P +  +I ++ +AG +EK  EL   M E   
Sbjct: 826 SVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSS 885

Query: 428 ---VPDNITFATMIQA 440
              +    T+ ++IQA
Sbjct: 886 SLNITSKDTYTSLIQA 901



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 154/349 (44%), Gaps = 17/349 (4%)

Query: 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186
           CK+   +  L  +   D  K    + T ++S   ++ L DEA S ++ M+  S C P+V 
Sbjct: 253 CKEGRWSDALVMIERED-FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS-CIPNVV 310

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
           TY  L+    K  +    ++I++ M   G   +   +N+++  Y  A+ +       + M
Sbjct: 311 TYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRM 370

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEK------MEKWYNEFNLMGVKADIQTLNILTKS 300
               GC P     N  I +  +   +         EK Y E  ++     +  +N  T +
Sbjct: 371 A-GCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEE--MLASSCVLNKVN--TAN 425

Query: 301 YGRA----GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           + R     G +DK   ++  M ++ F P   TY+ VI    +A  +EK    F++MK  G
Sbjct: 426 FARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVG 485

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+  TY  L+ ++ K GLI +  S   ++E+         +  ++ AY +   V +  
Sbjct: 486 VIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQAS 545

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465
           ++F  M +  C P+ IT++ ++      G ++ A  +  KMI   +N G
Sbjct: 546 DIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVG 594



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 154/369 (41%), Gaps = 34/369 (9%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+  L+    K KQ      +  +M+++G  P+  ++ +LV +Y  +     A+  +N M
Sbjct: 311 TYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRM 370

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFD------LIEKILAEMSYLGIECSAVTYNT---- 225
                C P    Y+I I S              L EK+  EM  L   C     NT    
Sbjct: 371 AGCG-CPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEM--LASSCVLNKVNTANFA 427

Query: 226 -IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
             + G GK   F++       M+  G   PD  T + +I+    +  +EK    + E   
Sbjct: 428 RCLCGMGK---FDKAFQIIKLMMRKGFV-PDTSTYSKVITFLCEAMKVEKAFLLFQEMKS 483

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
           +GV  D+ T  IL  S+ + G+ ++ RS  D M+     P+VVTY  ++  + K   + +
Sbjct: 484 VGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQ 543

Query: 345 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV---------------EN 389
             + F +M   G  PN+ITY +LV    KAG   K   +  ++               E+
Sbjct: 544 ASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEH 603

Query: 390 SDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +D I  +   +  +I    +A  V    EL   M    C P++I +  +I  +  +G  +
Sbjct: 604 TDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLD 663

Query: 449 AAQNLENKM 457
            AQ +  +M
Sbjct: 664 NAQEVFFRM 672



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 40/287 (13%)

Query: 125 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK  + + A  +F  M   G  P+V  YT+L+ A  +   LD A   ++ M   S C 
Sbjct: 655 GFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLE-SSCT 713

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+V TY+ +I    +        K+L+ M   G   + VTY ++IDG GK+ K +     
Sbjct: 714 PNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQL 773

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-------MEKWY---------------- 279
           F+ M+ + GC P+  T   +I+    +G +++       M++ Y                
Sbjct: 774 FTQMI-TQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFS 832

Query: 280 ----------NEFNLMGVKADIQTLNILTKSYGRAGMYDK---MRSVMDFMQKRFFFPTV 326
                      E    G+ +      +L  S+ +AG  +K   +   M  +       + 
Sbjct: 833 KKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSK 892

Query: 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373
            TY  +I+    A  +EK  E + ++  +G+ P    +  L+    K
Sbjct: 893 DTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIK 939



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
           + LN++ +   R G + K    +  ++   + P+  TYN +++    AG ++      K+
Sbjct: 173 RLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKE 232

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G   +  T      A  K G   +    L  +E  D  LDT     +IS   +A  
Sbjct: 233 MSELGFCTDKFTVGCFAQALCKEG---RWSDALVMIEREDFKLDTVLCTQMISGLMEASL 289

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAY 441
            ++       M+   C+P+ +T+ T++  +
Sbjct: 290 FDEAISFLHRMRCNSCIPNVVTYRTLLAGF 319



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 10/189 (5%)

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           +++++ C +   +    + L  +   G   S  TYN ++     A + +        M E
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSE 235

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAG 305
            G C  D FT+     A    G      +W +   ++     K D      +      A 
Sbjct: 236 LGFC-TDKFTVGCFAQALCKEG------RWSDALVMIEREDFKLDTVLCTQMISGLMEAS 288

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
           ++D+  S +  M+     P VVTY  ++  F K   +   +     M + G  PN   + 
Sbjct: 289 LFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFN 348

Query: 366 SLVSAYSKA 374
           SLV +Y  A
Sbjct: 349 SLVHSYCNA 357


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 175/407 (42%), Gaps = 39/407 (9%)

Query: 82  LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141
           +E +   +K +K + A  I   +R+ ++  A    +T L+  L + ++P+   +LF  M 
Sbjct: 164 IELVANCVKSRKLREAFDIIQTMRKFKFRPAF-SAYTILIGALSEVREPDPMLILFHQMQ 222

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
             G + +V ++T L+  + + G +D A S +++MKS S    D+  Y++ I    K  + 
Sbjct: 223 ELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS-LDADIVLYNVCIDCFGKAGKV 281

Query: 202 DLIEKILAEM-------------SYLGIEC----------------------SAVTYNTI 226
           D+  K   EM             S +G+ C                       A  YNT+
Sbjct: 282 DMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTM 341

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I GYG A KF+E         ++ G  P +   N +++  G    +E+  + + E     
Sbjct: 342 IMGYGSAGKFDEAYGLLERQ-KAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA 400

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           V  ++ T NIL     R G  +    + D M++   FP V+T NI+I+   KA  +E+  
Sbjct: 401 V-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEAC 459

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
             F+ M  +   PN++T+ SL+    K G +    S+  ++ +   +     +  +I ++
Sbjct: 460 SIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSF 519

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
            + G  E   +++  M    C PD     T +      G TE  + L
Sbjct: 520 FKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRAL 566



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 156/352 (44%), Gaps = 6/352 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPS 148
           K  +   A+++F  L Q +  +  C      M+M  G   + ++A  L E   + G  PS
Sbjct: 312 KANRLDEAVELFEQLEQNR--KVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 369

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208
           V  Y  +++  G+   ++EA     +MK   D  P+V TY+ILI    +  + +   +I 
Sbjct: 370 VIAYNCILTCLGKKRRVEEALRIFEEMKR--DAVPNVPTYNILIDMLCREGKLNAALEIR 427

Query: 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268
            +M   G+  + +T N +ID   KA+K EE  S F  M +   C P+  T +S+I   G 
Sbjct: 428 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGK 486

Query: 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328
            G ++     Y +    G          L +S+ + G  +    +   M      P +  
Sbjct: 487 CGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTL 546

Query: 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388
            N  ++   KAG  EK    F+++   G  P++ +Y  L+    KAGL  +   +   ++
Sbjct: 547 INTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMK 606

Query: 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
               +LDT  +N +I  + ++G V K  +L   MK +   P  +T+ ++I  
Sbjct: 607 EQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDG 658



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 173/411 (42%), Gaps = 73/411 (17%)

Query: 101 FGLLRQQQWYQA--RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           +GLL +Q+   +      +  ++  LGK ++ E+A  +FE M  D + P+V  Y  L+  
Sbjct: 355 YGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDM 413

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
             + G L+ A    +DM+  +   P+V T +I+I    K  + +    I   M       
Sbjct: 414 LCREGKLNAALEIRDDMER-AGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTP 472

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---------------------------- 250
           +AVT++++IDG GK  + ++  S +  M++ G                            
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIY 532

Query: 251 ------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
                 GC PD+  +N+ +     +G  EK    + E N  G   D ++ +IL     +A
Sbjct: 533 KEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 592

Query: 305 GM-----------------------------------YDKMRSVMDFMQKRFFFPTVVTY 329
           G+                                    +K   +++ M+ +   PTVVTY
Sbjct: 593 GLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTY 652

Query: 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
             VI+   K   +++    F++ K  G+K N + Y SL+  + K G I +   I+ ++  
Sbjct: 653 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 712

Query: 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             +  +   +NC++ A  +A ++ +    F +MK+  C P+ IT++ +I  
Sbjct: 713 KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILING 763



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 5/326 (1%)

Query: 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185
           K  + E+   LF  + + G  P    Y+ L+    ++GL +E +     MK    C  D 
Sbjct: 556 KAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE-QGCVLDT 614

Query: 186 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           + Y+ +I    K  + +   ++L EM   G   + VTY ++IDG  K  + +E    F  
Sbjct: 615 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674

Query: 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305
             +S G   ++   +S+I  +G  G I++      E    G+  ++ T N L  +  +A 
Sbjct: 675 -AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 733

Query: 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365
             ++       M+     P  +TY+I+I    +     K   ++++M+  G+KPN+ITY 
Sbjct: 734 EINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYT 793

Query: 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425
           +++S  +KAG I++   +  + + +  I D+  +N +I     A        LF   + +
Sbjct: 794 TMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLK 853

Query: 426 HCVPDNITFATMIQAYNALGMTEAAQ 451
            C   NI   T +   +AL   E  +
Sbjct: 854 GC---NIHTKTCVVLLDALHKAECLE 876



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 162/393 (41%), Gaps = 36/393 (9%)

Query: 85  LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG 144
           +D   K +K + A  IF  +   +       TF+ L+  LGKC + + A  L+E ML  G
Sbjct: 446 IDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 504

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDM------------KSVSDCK---------- 182
             P   VYT+L+ ++ + G  ++      +M             +  DC           
Sbjct: 505 HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGR 564

Query: 183 ------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230
                       PD  +YSILI    K    +   ++   M   G       YN +IDG+
Sbjct: 565 ALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGF 624

Query: 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 290
            K+ K  +       M +  G  P + T  S+I        +++    + E    G+K +
Sbjct: 625 CKSGKVNKAYQLLEEM-KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 683

Query: 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350
           +   + L   +G+ G  D+   +M+ + ++   P V T+N +++   KA  I +    F+
Sbjct: 684 VVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 743

Query: 351 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410
            MK     PN ITY  L++   +     K     ++++   +  +T  +  +IS   +AG
Sbjct: 744 SMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAG 803

Query: 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           ++ +   LF   K    +PD+ ++  MI+  ++
Sbjct: 804 NILEASGLFSRFKANGGIPDSASYNAMIEGLSS 836



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 1/252 (0%)

Query: 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246
            Y+ L+    +   FD +E+IL EMS  G   S+     ++    K++K  E       M
Sbjct: 127 AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTM 186

Query: 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306
                  P       +I A       + M   +++   +G + ++     L + + R G 
Sbjct: 187 -RKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGR 245

Query: 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366
            D   S++D M+       +V YN+ I+ FGKAG ++   ++F +MK  G+ P+ +TY S
Sbjct: 246 VDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTS 305

Query: 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426
           ++    KA  + +   +  Q+E +  +     +N +I  YG AG  ++   L    K + 
Sbjct: 306 MIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 365

Query: 427 CVPDNITFATMI 438
            +P  I +  ++
Sbjct: 366 SIPSVIAYNCIL 377


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 157/354 (44%), Gaps = 6/354 (1%)

Query: 98  LKIFGLLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L +F  +R       R    T+  L+         +Q+ +L   ML  G+ P    Y  +
Sbjct: 255 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHI 314

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           V A+  +G L  A    ++M +      D   Y  L+++ T+         +L +M   G
Sbjct: 315 VDAFASAGNLSRAAELFSEMAATGHTA-DASAYLGLMEAHTRVGATADAVAVLRQMQADG 373

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              +A TY  ++D YG+  +F+ +   F  M  +    PD  T N +   +G+ G  +++
Sbjct: 374 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFKEV 431

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + +++    GV+ D+ T   +  + G  G++   R V+++M +    PT   Y  ++E 
Sbjct: 432 VELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 491

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            G A   E+    F  M   G  P   TY +L  AY++ GL  + ++I  ++ N+  I  
Sbjct: 492 LGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQK 551

Query: 396 T-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   F+ +I AY Q   ++   + ++ M++    PD  +   ++ AY   G+ +
Sbjct: 552 SKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 605



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 167/369 (45%), Gaps = 12/369 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L++F  +++Q W +        ++ +LG+ + P       EV      +   
Sbjct: 137 RRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVFHDLPAESRT 195

Query: 150 DV-YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR----FDLI 204
            + YT+L++AY ++ L +EA + ++ MK+ +   P   TY+ ++ +C +       FD++
Sbjct: 196 ALSYTSLIAAYARNALHEEARALLDQMKA-TGVAPTAATYNTVLAACARATDPPVPFDML 254

Query: 205 EKILAEMSYLG---IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
             + AEM +     +     TYNT++         ++ E     M+E+ G  PD  +   
Sbjct: 255 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA-GVSPDTVSYRH 313

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++ A+ ++GN+ +  + ++E    G  AD      L +++ R G      +V+  MQ   
Sbjct: 314 IVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADG 373

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             PT  TY ++++ +G+ G  + + + F++M+   + P++ TY  L   +   G   +V 
Sbjct: 374 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFKEVV 432

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   +  + V  D      +++A G  G      E+   M     VP    +  +++A 
Sbjct: 433 ELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEAL 492

Query: 442 NALGMTEAA 450
               M E A
Sbjct: 493 GHAAMYEEA 501



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 128 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 186

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             L  E  +A++Y ++I  Y +    EE  +    M ++ G  P   T N++++A   + 
Sbjct: 187 HDLPAESRTALSYTSLIAAYARNALHEEARALLDQM-KATGVAPTAATYNTVLAACARAT 245

Query: 271 N----IEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     + +   + E        V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 246 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 305

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  V+Y  +++ F  AG++ +  E F +M   G   ++  Y  L+ A+++ G      ++
Sbjct: 306 PDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAV 365

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ++          +  ++  YG+ G  + + +LF  M+     PD  T+  + + +  
Sbjct: 366 LRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGD 424

Query: 444 LGMTEAAQNLENKMI 458
            G  +    L + M+
Sbjct: 425 GGFFKEVVELFHDML 439



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSY 301
           F  M     C PD      +I   G  G    ++K    F+ +  ++    +   L  +Y
Sbjct: 148 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFHDLPAESRTALSYTSLIAAY 206

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHRG- 356
            R  ++++ R+++D M+     PT  TYN V+    +A       + +   F +M+H   
Sbjct: 207 ARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDAS 266

Query: 357 --MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++P+  TY +L++A +   L  + + +L  +  + V  DT  +  I+ A+  AG++ +
Sbjct: 267 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 326

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             ELF  M       D   +  +++A+  +G T  A  +  +M A
Sbjct: 327 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 371



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 113/304 (37%), Gaps = 40/304 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +M   G       A  + E M  +G+ P+ D YT LV A G + + +EA+   N M
Sbjct: 449 TCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMM 508

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                               T+      +E                TYN +   Y +   
Sbjct: 509 --------------------TEIGSLPTLE----------------TYNALAFAYARGGL 532

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  + G      + +++I AY     ++   K Y E        D ++L 
Sbjct: 533 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 592

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-H 354
            +  +Y  AG+ D+ +   + +Q     P+V+ Y +++  + +        +  ++MK +
Sbjct: 593 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTN 652

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA---YGQAGD 411
           R    + +    +   Y  +     V+ +L             FFN ++     +GQ G 
Sbjct: 653 RASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGR 712

Query: 412 VEKM 415
             ++
Sbjct: 713 AARV 716


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 160/343 (46%), Gaps = 5/343 (1%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+ +L    +   A  L + ML  G +P+V  YT L+ A  ++   ++A + +++M
Sbjct: 144 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEM 203

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           ++   C P++ TY+++I    +  R D    +L  +   G +   V+Y T++ G   +K+
Sbjct: 204 RA-KGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKR 262

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++++E  F+ M+E   C P+  T + +I  +   G +E+  +   +        +    N
Sbjct: 263 WDDVEELFAEMMEK-NCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCN 321

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+  S  + G  D     ++ M      P  ++Y  V++   +A      +E  K+M   
Sbjct: 322 IVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRN 381

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
              PN +T+ + +    + GLI +   ++ Q++     +    +N +++ +   G ++  
Sbjct: 382 NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSA 441

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
            ELF +M    C P+ IT+ T++         +AA  L  +M+
Sbjct: 442 LELFRSMP---CKPNTITYTTLLTGLCNAERLDAAAELVAEML 481



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 140/313 (44%), Gaps = 2/313 (0%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 204
           + P    YT L+      G + +A S ++DM     C+P+V TY++L+++  K   F+  
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR-RGCQPNVVTYTVLLEAMCKNSGFEQA 196

Query: 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264
             +L EM   G   + VTYN II+G  +  + ++     + +  S GC PD  +  +++ 
Sbjct: 197 MAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLF-SYGCQPDTVSYTTLLK 255

Query: 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324
               S   + +E+ + E        +  T ++L + + R GM ++   V+  M +     
Sbjct: 256 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECAT 315

Query: 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384
                NIVI +  K G ++   ++   M   G  P++I+Y +++    +A        +L
Sbjct: 316 NTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELL 375

Query: 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444
           +++  ++   +   FN  I    Q G +E+   L   M+E  C    +T+  ++  +   
Sbjct: 376 KEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQ 435

Query: 445 GMTEAAQNLENKM 457
           G  ++A  L   M
Sbjct: 436 GHIDSALELFRSM 448



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 164/388 (42%), Gaps = 40/388 (10%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++  Q    T+T L+  + K    EQA  + + M + G  P++  Y  +++   + G +D
Sbjct: 170 RRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 229

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           +A   +N + S   C+PD  +Y+ L+K      R+D +E++ AEM       + VT++ +
Sbjct: 230 DARDLLNRLFSYG-CQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDML 288

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           I  + +    E        M E   C  +    N +I++    G ++   K+ N     G
Sbjct: 289 IRFFCRGGMVERAIQVLQQMTEH-ECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYG 347

Query: 287 VKADIQTLNILTKSYGRA-----------------------------------GMYDKMR 311
              D  +   + K   RA                                   G+ ++  
Sbjct: 348 CNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAI 407

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ MQ+      VVTYN ++  F   GHI+   E F+ M     KPN+ITY +L++  
Sbjct: 408 MLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGL 464

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
             A  +     ++ ++ + D   +   FN +++ + Q G +++  EL   M E  C P+ 
Sbjct: 465 CNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNL 524

Query: 432 ITFATMIQAYNALGMTEAAQNLENKMIA 459
           IT+ T+         +E A  L + +++
Sbjct: 525 ITYNTLFDGITKDCSSEDALELLHGLVS 552



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 133/309 (43%), Gaps = 6/309 (1%)

Query: 133 ASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191
           A+ L E+  S DG  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 58  AARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEG-SGSPVDVFAYNTL 116

Query: 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251
           +    ++   D   +++  M    +   A TY  +I       +  +  S    M+  G 
Sbjct: 117 VAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG- 172

Query: 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311
           C P++ T   ++ A   +   E+     +E    G   +I T N++     R G  D  R
Sbjct: 173 CQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 232

Query: 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371
            +++ +      P  V+Y  +++    +   + +EE F +M  +   PN +T+  L+  +
Sbjct: 233 DLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFF 292

Query: 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431
            + G++ +   +L+Q+   +   +T   N +I++  + G V+   +    M    C PD 
Sbjct: 293 CRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDT 352

Query: 432 ITFATMIQA 440
           I++ T+++ 
Sbjct: 353 ISYTTVLKG 361



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/414 (17%), Positives = 170/414 (41%), Gaps = 42/414 (10%)

Query: 92  KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151
           K+W    ++F  + ++        TF  L+    +    E+A  + + M       +  +
Sbjct: 261 KRWDDVEELFAEMMEKNCMPNE-VTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTL 319

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
              ++++  + G +D+AF  +N+M S   C PD  +Y+ ++K   +  R++  +++L EM
Sbjct: 320 CNIVINSICKQGRVDDAFKFLNNMGSYG-CNPDTISYTTVLKGLCRAERWNDAKELLKEM 378

Query: 212 -------------SYLGIEC----------------------SAVTYNTIIDGYGKAKKF 236
                        +++ I C                        VTYN +++G+      
Sbjct: 379 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHI 438

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           +     F +M     C P+  T  ++++   N+  ++   +   E        ++ T N+
Sbjct: 439 DSALELFRSM----PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNV 494

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L   + + G  D+   +++ M +    P ++TYN + +   K    E   E    +  +G
Sbjct: 495 LVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKG 554

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+ IT+ S++   SK   + +   +    ++  +      +N I+    +  +++   
Sbjct: 555 VSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAI 614

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           +    M    C+P+  T+  +I+     G+ + AQ+L + M+  +    K LI+
Sbjct: 615 DFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLS-MLCSRGVVSKNLIE 667


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 169/366 (46%), Gaps = 12/366 (3%)

Query: 81  VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVM 140
           VL  L    + KKW L  +I   +R Q W+         L+   GK      A  +   M
Sbjct: 107 VLGTLVRFKQLKKWHLVSQILEWVRTQSWWDFNEMDSLMLITAYGKQGNFSAAEKVLSYM 166

Query: 141 LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200
              G  P+V  +TAL+ AYG+    + A +    M+S S  KP   TY I++K+  + ++
Sbjct: 167 NKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQS-SGPKPSAVTYQIILKNFVEGNK 225

Query: 201 FDLIEKILAEMSYLGIECSAVT-----YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
           F   E++   +  L  E S +      ++ +I  + KA  +E+    F+ M +  G    
Sbjct: 226 FKEAEEVFETL--LDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQR-GVPKS 282

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T NS++S   N   + K+   Y++    G++ D+ +  +L  +YG+A   D+  +V +
Sbjct: 283 TVTYNSLMSFETNYKEVSKI---YDQMQRSGLQPDVISYALLINAYGKARREDEALAVFE 339

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M      PT   YNI+++ F  +G +E+    FK M+     P+  +Y +++SAY  A 
Sbjct: 340 EMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNAS 399

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +   ++   +++   +  +   +  +I  Y +  +++KM E +  M+ R    +   F 
Sbjct: 400 DMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFT 459

Query: 436 TMIQAY 441
           T++ AY
Sbjct: 460 TIMDAY 465



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 41/230 (17%)

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+AYG  GN    EK  +  N MG   ++ +   L ++YGR   Y+   ++   MQ   
Sbjct: 146 LITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSG 205

Query: 322 FFPTVVTYNIVIETF--------------------------------------GKAGHIE 343
             P+ VTY I+++ F                                       KAG+ E
Sbjct: 206 PKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYE 265

Query: 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403
           K  + F  M  RG+  +++TY SL+S  +      +V  I  Q++ S +  D   +  +I
Sbjct: 266 KARQIFALMTQRGVPKSTVTYNSLMSFETN---YKEVSKIYDQMQRSGLQPDVISYALLI 322

Query: 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453
           +AYG+A   ++   +F  M +    P +  +  ++ A+   GM E A+ +
Sbjct: 323 NAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTV 372


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 2/305 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           +F+ M+  G+ P+V  Y  L+  +  +G L+       +M+  + C P+V TY+ +I + 
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMER-NGCLPNVVTYNTIIDAY 248

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  +     K+L  M+  G+  + ++YN +I+G  +  + +E       M +     PD
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PD 307

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
             T N++I+ Y N GN  +    + E    G+  ++ T   L  S  +AG  ++    +D
Sbjct: 308 RVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLD 367

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M+ R   P   TY  +I+ F + G +++  +  K+M   G  P  ITY +L++ +   G
Sbjct: 368 QMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILG 427

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
            +     +L+++     I D   ++ IIS + +  ++EK  +L + M  +   PD  T++
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS 487

Query: 436 TMIQA 440
           ++IQ 
Sbjct: 488 SLIQG 492



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
           S G  P V  Y A++ A  ++    +    I      S   P+VYTY+ILI+        
Sbjct: 160 SYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNL 219

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
           ++      EM   G   + VTYNTIID Y K +K  E       M   G  +P++ + N 
Sbjct: 220 EMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG-LNPNLISYNV 278

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           +I+     G +++  +   E +      D  T N L   Y   G + +   +   M K  
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P VVTY  +I +  KAG++ +  E+  +M+ RG+ PN  TY +L+  +S+ G + +  
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            I++++  +        +N +I+ +   G +E    L   M ER  +PD ++++T+I  +
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGF 458

Query: 442 NALGMTEAAQNLENKMIA 459
                 E A  L+ +M+A
Sbjct: 459 CRNQELEKAFQLKVEMVA 476



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 171/381 (44%), Gaps = 21/381 (5%)

Query: 96  LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L LK     R QQ++  +C+     ++   K  +  Q SL  EV+++   +   D++  L
Sbjct: 63  LVLKFLDWARSQQFFSFQCKCLALHILTRYKLYKTAQ-SLAEEVVVNTVDETGEDLFQCL 121

Query: 156 VSAYGQS-----------------GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198
            ++Y Q                   L+++A S +N  KS     P V +Y+ ++ +  + 
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYG-FMPGVLSYNAILDAVIRT 180

Query: 199 HR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257
            +   + E I  EM   G+  +  TYN +I G+  A   E M   F   +E  GC P++ 
Sbjct: 181 KQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLE-MGLFFFGEMERNGCLPNVV 239

Query: 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317
           T N++I AY     I +  K      L G+  ++ + N++     R G   +   +++ M
Sbjct: 240 TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299

Query: 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377
            KR + P  VT+N +I  +   G+  +      +M   G+ PN +TY +L+++  KAG +
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 378 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437
            +    L Q+ +  +  +   +  +I  + Q G +++  ++   M E    P  IT+  +
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 438 IQAYNALGMTEAAQNLENKMI 458
           I  +  LG  E A  L  +MI
Sbjct: 420 INGHCILGRMEDASGLLQEMI 440



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 21/342 (6%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T L+  + K     +A    + M   GL P+   YT L+  + Q G L +A+  + +M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
              +   P + TY+ LI       R +    +L EM   G     V+Y+TII G+ +   
Sbjct: 405 VE-NGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN-- 461

Query: 236 FEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            +E+E +F   VE  + G  PD+ T +S+I        + ++   + E   +G+  D  T
Sbjct: 462 -QELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
              L  +Y   G  DK   + D M ++ F P +VTYN++I  F K    ++ +    K+ 
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 354 HRGMKPNSITYCSLVS---------------AYSKAGLIMKVDSILRQVENSDVILDTPF 398
           +    PN ITY +L+                 +   GL+ + D +L  +      L+   
Sbjct: 581 YEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEV 640

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
           +N II  + + G++EK   L+  M      P ++T   + ++
Sbjct: 641 YNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKS 682



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 176/411 (42%), Gaps = 41/411 (9%)

Query: 85  LDEAIKQKKWQLALKIF-GLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVML 141
           LD  I+ K+   ++KI  G+ ++          +T  +++ G C     E     F  M 
Sbjct: 174 LDAVIRTKQ---SVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEME 230

Query: 142 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201
            +G  P+V  Y  ++ AY +   + EAF  +  M ++    P++ +Y+++I    +  + 
Sbjct: 231 RNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM-ALKGLNPNLISYNVVINGLCREGQM 289

Query: 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------- 250
               +IL EMS        VT+NT+I+GY     F +     + MV++G           
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTL 349

Query: 251 -----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
                                  G HP+  T  ++I  +   G +++  +   E    G 
Sbjct: 350 INSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
              I T N L   +   G  +    ++  M +R F P VV+Y+ +I  F +   +EK  +
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407
              +M  +G+ P+  TY SL+    K   + +V  + +++ +  +  D   +  +I+AY 
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
             GD++K   L   M ++   PD +T+  +I  +N    T+ A+ L  K++
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 151/351 (43%), Gaps = 4/351 (1%)

Query: 101 FGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSA 158
           F LLR            +  +V+ G C+  Q ++ S + E M      P    +  L++ 
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLING 317

Query: 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 218
           Y   G   +A     +M   +   P+V TY+ LI S  K    +   + L +M   G+  
Sbjct: 318 YCNVGNFHQALVLHAEMVK-NGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 278
           +  TY T+IDG+ +    ++       MVE+G   P I T N++I+ +   G +E     
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFT-PTIITYNALINGHCILGRMEDASGL 435

Query: 279 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338
             E    G   D+ + + +   + R    +K   +   M  +   P V TY+ +I+   K
Sbjct: 436 LQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495

Query: 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398
              + ++ + F++M   G+ P+ +TY SL++AY   G + K   +  ++       D   
Sbjct: 496 QRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449
           +N +I+ + +    ++   L L +     VP+ IT+ T+I   N L    A
Sbjct: 556 YNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSA 606



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 142/324 (43%), Gaps = 23/324 (7%)

Query: 125 GKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G C   + E AS L + M+  G  P V  Y+ ++S + ++  L++AF    +M  K +S 
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS- 480

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 240
             PDV TYS LI+   K  R   +  +  EM  LG+    VTY ++I+ Y      ++  
Sbjct: 481 --PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY----------NEFNLMGVKAD 290
                M++ G   PDI T N +I+ +      ++ ++            NE     +  +
Sbjct: 539 RLHDEMIQKG-FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN 597

Query: 291 IQTLNI-----LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 345
              L       L K +   G+ ++   V++ M ++ +      YN++I    K G+IEK 
Sbjct: 598 CNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKA 657

Query: 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
              +K+M H G  P+S+T  +L  +    G  ++++ +L     S  I +      +I  
Sbjct: 658 YNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGI 717

Query: 406 YGQAGDVEKMGELFLTMKERHCVP 429
             + G+++ +  +   M     +P
Sbjct: 718 NSKEGNMDAVFNVLKDMALSGLLP 741



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 25/257 (9%)

Query: 125 GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 180
           G CKQ     +  LF+ MLS GL P    YT+L++AY   G LD+A    ++M  K  S 
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS- 550

Query: 181 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------------ 228
             PD+ TY++LI    K  R    +++L ++ Y     + +TYNT+ID            
Sbjct: 551 --PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALA 608

Query: 229 ---GYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284
              G+       E +    +M++ G   + +++  N +I  +   GNIEK    Y E   
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVY--NVIIHGHSKVGNIEKAYNLYKEMLH 666

Query: 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 344
            G      T+  L KS    G   ++  ++D+  K           ++I    K G+++ 
Sbjct: 667 SGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDA 726

Query: 345 MEEYFKKMKHRGMKPNS 361
           +    K M   G+ P S
Sbjct: 727 VFNVLKDMALSGLLPYS 743


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 149/346 (43%), Gaps = 5/346 (1%)

Query: 115 QTFTKLMVMLGKCKQPEQAS---LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171
            TFT   +MLG C+    A+   L  ++    G       YT L+     +G +D+A   
Sbjct: 124 DTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRV 183

Query: 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231
              M S   C+P V+TY++L+    K  R    E +L EM   G+  + VTYN +I G  
Sbjct: 184 FAKM-SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLC 242

Query: 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291
           +  +F+++      M E     PD +T   ++      G +    K  +E    GV  ++
Sbjct: 243 QEGRFDDVTKLLEKM-EIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEV 301

Query: 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351
            T N L   Y + G       V+  M++    P V T+N VI  F   G + K   +  +
Sbjct: 302 LTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQ 361

Query: 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411
           M   G+ PN++T+ SL+S     G       +L  +E   V+ D   +   I A    G 
Sbjct: 362 MAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQ 421

Query: 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           +E+   LF  +  +     N+ + +++  Y  +G  ++A  L  KM
Sbjct: 422 LEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKM 467



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 155/345 (44%), Gaps = 7/345 (2%)

Query: 97  ALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156
           A ++F  +  + W +    T+T L+  L K ++  +A  L   M++ G+ P+V  Y AL+
Sbjct: 180 ACRVFAKM-SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALI 238

Query: 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 216
               Q G  D+    +  M+ +    PD +TY+ ++    K  +     K+L E    G+
Sbjct: 239 GGLCQEGRFDDVTKLLEKME-IQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGV 297

Query: 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEK 274
               +TYN +I+GY K     +M+++   +  ++    +P + T N +I  +   G + K
Sbjct: 298 ALEVLTYNALINGYCKGG---DMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHK 354

Query: 275 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334
              +  +    G+  +  T N L       G       ++D M++    P   TY I I+
Sbjct: 355 AMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFID 414

Query: 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394
                G +E+    F  +  +G+K +++ Y SLV  Y + G I     ++ ++ + + + 
Sbjct: 415 ALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMP 474

Query: 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           D   +N +I    +   +++  +L   MK++   P   TF  +I+
Sbjct: 475 DVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIK 519



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 95  QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154
           ++AL++  L+ +      R QT+   +  L    Q E+A  LF  +   G+K    +YT+
Sbjct: 388 KIALRLLDLMEEYGVLPDR-QTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTS 446

Query: 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214
           LV  Y Q G +D AF  +  M S  +C PDV+TY+ LI    K  R D    +L +M   
Sbjct: 447 LVHGYCQVGDIDSAFGLMEKMAS-ENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQ 505

Query: 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD--IFTLNSMISAYGNSGNI 272
           GIE +  T+N +I      KK  +    +  M+ S GC PD   +TL      +  +   
Sbjct: 506 GIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISS-GCKPDKQTYTLKISTDWFEGATKE 564

Query: 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
           E ++    E +  GV  D++T N + K+Y  AG+ +K       M      P   TY+I+
Sbjct: 565 ENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSIL 624

Query: 333 I--------------ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378
           +              E   K   +  ++E F++M      P   TY +L+        + 
Sbjct: 625 LNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLE 684

Query: 379 KVDSILRQVENSDVILDTPFFNCIISAY 406
           +V+ +L +++ + ++LD    + ++  Y
Sbjct: 685 EVEWLLLKMQGNSILLDEDMSDYLLGCY 712



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 148/355 (41%), Gaps = 4/355 (1%)

Query: 108 QWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167
           Q +   C T+T+++  L K  +    + +    +  G+   V  Y AL++ Y + G +  
Sbjct: 260 QRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKA 319

Query: 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227
           A   +  MK  +   P V T++ +I       +       L +M+  G+  + VT+N++I
Sbjct: 320 ALDVLQLMKR-NRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLI 378

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
            G     +  ++      ++E  G  PD  T    I A  + G +E+    ++   + G+
Sbjct: 379 SGQCSVGE-RKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGI 437

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
           KA       L   Y + G  D    +M+ M      P V TYN +I+   K   +++  +
Sbjct: 438 KAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAID 497

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA-- 405
              KMK +G++P + T+  L+              +  Q+ +S    D   +   IS   
Sbjct: 498 LLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDW 557

Query: 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460
           +  A   E +    + M E    PD  T+  +I+AY   G+ E A     KM+++
Sbjct: 558 FEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSV 612



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 107/275 (38%)

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+  TY+ LI +  K          L  M   G+     TYN ++ G  +A         
Sbjct: 88  PNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGL 147

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           F  M    G   D ++   +I     +G I+   + + + +    +  + T  +L     
Sbjct: 148 FVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLC 207

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           +     +  +++  M  +   P VVTYN +I    + G  + + +  +KM+ +   P+  
Sbjct: 208 KVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCW 267

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
           TY  +V    K G +     +L +     V L+   +N +I+ Y + GD++   ++   M
Sbjct: 268 TYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLM 327

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           K     P   TF  +I  +   G    A     +M
Sbjct: 328 KRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQM 362



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 102/252 (40%), Gaps = 42/252 (16%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK-SCTK--FHR 200
           G+ P V+ Y A++ AY  +GL ++AF     M SV    PD  TYSIL+   C K     
Sbjct: 578 GVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVP-IDPDCTTYSILLNYMCNKDDSDA 636

Query: 201 FD---------------LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245
           FD               L E++    +  GI     TY  ++ G     + EE+E     
Sbjct: 637 FDNEKIWKMVDVRNLQELFEQMCESDAAPGIS----TYKALLRGLCNQCRLEEVEWLLLK 692

Query: 246 MVESGGCHPDIFTLNSMISAY--GNSGNIEKMEKWYNEFNLM-------GVKADIQTLNI 296
           M        +   L+  +S Y  G   N+E   +   +F  M       G+K+    L+ 
Sbjct: 693 M------QGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSG 746

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  S G  GM   + S  D +   + +  VV + ++I+   + GH     E    M  + 
Sbjct: 747 LCDS-GDHGMAVSIFS--DMLGLGYNYDEVV-WKLLIDCLHEKGHAGACLEMLSVMDAKK 802

Query: 357 MKPNSITYCSLV 368
              ++ TY SLV
Sbjct: 803 CVASTRTYASLV 814



 Score = 38.9 bits (89), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397
           +A  +  +   F  M   G  PN  TY +L++A+ K  L+    + L ++  + +  DT 
Sbjct: 67  RAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTF 126

Query: 398 FFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENK 456
            +NC++    +AG +     LF+ M  R     D  ++  +I+   A G  + A  +  K
Sbjct: 127 TYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAK 186

Query: 457 M 457
           M
Sbjct: 187 M 187


>gi|449446895|ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Cucumis sativus]
          Length = 668

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 180/374 (48%), Gaps = 14/374 (3%)

Query: 80  PVLEALDEAIKQKKWQLALKIFGLLRQQ-------QWYQARCQT----FTKLMVMLGKCK 128
           P L      +K +   + L+ FG+L +        +W Q   +T    ++  +  +G+  
Sbjct: 92  PALARYGGLLKAQDLNVILRHFGMLSRWKDLSQLFEWMQETGKTNVSSYSSYIKFMGRGL 151

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
            P +A  ++  +    +K S+ +  ++++   ++G  D +    + MK+   C PD  TY
Sbjct: 152 NPLKALEVYNNIEEVSIKNSIFICNSILNCLVRNGKFDTSVKLFHQMKNDGLC-PDTVTY 210

Query: 189 SILIKSCTKF-HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           S ++  C +  H +    ++L E+   G+    V+Y T+I       + E+ E  F+ M 
Sbjct: 211 STMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVSYGTLIAICASHNRLEDAERFFNQM- 269

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307
            + G  P++F   S+++AY  +G+ +K ++   +  L G+  +   L  L K Y R G++
Sbjct: 270 RAEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLF 329

Query: 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367
           +K R ++  ++   +    + Y ++++   KAG I + +  F +MK + +K +   +  +
Sbjct: 330 EKSRKLLSELESLGYGENEMPYCLLMDGLAKAGSIREAKTVFDEMKAKNVKTDGYAHSIM 389

Query: 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427
           +SA+ + GL+ +   + +  E +    D    N ++ AY +AG++E + ++   M +   
Sbjct: 390 ISAFCRGGLLEEAKLLAKDFEATYDRYDIVILNTMLCAYCRAGEMESVMQMLRKMDDLAI 449

Query: 428 VPDNITFATMIQAY 441
            PD  TF  +I+ +
Sbjct: 450 SPDYNTFHILIKYF 463



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 37/265 (13%)

Query: 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173
           C ++  L+ +     + E A   F  M ++G  P++  Y +L++AY  +G   +A   I 
Sbjct: 243 CVSYGTLIAICASHNRLEDAERFFNQMRAEGHSPNMFHYGSLLNAYSINGDYKKADELIE 302

Query: 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
           DMK ++   P+    + L+K   +   F+   K+L+E+  LG   + + Y  ++DG  KA
Sbjct: 303 DMK-LTGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELESLGYGENEMPYCLLMDGLAKA 361

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                                               G+I + +  ++E     VK D   
Sbjct: 362 ------------------------------------GSIREAKTVFDEMKAKNVKTDGYA 385

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            +I+  ++ R G+ ++ + +    +  +    +V  N ++  + +AG +E + +  +KM 
Sbjct: 386 HSIMISAFCRGGLLEEAKLLAKDFEATYDRYDIVILNTMLCAYCRAGEMESVMQMLRKMD 445

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIM 378
              + P+  T+  L+  + K  L +
Sbjct: 446 DLAISPDYNTFHILIKYFFKEKLYL 470



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 1/205 (0%)

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN-ILTKSYGRAGMYDKMRSVM 314
           IF  NS+++    +G  +   K +++    G+  D  T + +LT        Y K   ++
Sbjct: 172 IFICNSILNCLVRNGKFDTSVKLFHQMKNDGLCPDTVTYSTMLTGCIRVKHGYAKAMELL 231

Query: 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374
             +Q        V+Y  +I        +E  E +F +M+  G  PN   Y SL++AYS  
Sbjct: 232 KELQDNGLCMDCVSYGTLIAICASHNRLEDAERFFNQMRAEGHSPNMFHYGSLLNAYSIN 291

Query: 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434
           G   K D ++  ++ + ++ +      ++  Y + G  EK  +L   ++      + + +
Sbjct: 292 GDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELESLGYGENEMPY 351

Query: 435 ATMIQAYNALGMTEAAQNLENKMIA 459
             ++      G    A+ + ++M A
Sbjct: 352 CLLMDGLAKAGSIREAKTVFDEMKA 376


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 6/329 (1%)

Query: 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189
           P  A +LF  +    L  S   +  ++     +G    A   +  M S     P+  TY+
Sbjct: 97  PAPAFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS-----PNAVTYN 151

Query: 190 ILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
            +I       R     +I+ EM   G I     TY T+I G+ K  K E+    F  M+ 
Sbjct: 152 TVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLT 211

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
            G   P+    N++I  Y + GN+E   ++  E    GV   + T N+   +    G   
Sbjct: 212 EGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAA 271

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368
           +  ++++ M ++   P   TYNI+I  + K G  +K  + F+ M  +G++   +TY SL+
Sbjct: 272 EAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLI 331

Query: 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428
            A S  G++ + D +        +  D   +N +I+++   GD+++  E+   M+++   
Sbjct: 332 HALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRIT 391

Query: 429 PDNITFATMIQAYNALGMTEAAQNLENKM 457
           PD++T+ T+++    LG  + A+ L  +M
Sbjct: 392 PDDVTYNTLMRGLCLLGRLDEARGLIEEM 420



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 150/379 (39%), Gaps = 39/379 (10%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  ++  L    +P +A  L   M S    P+   Y  +++ +   G +      + +M
Sbjct: 118 TFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREM 173

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAK 234
           +      PD YTY+ +I    K  + +   K+  EM   G +E +AV YN +I GY    
Sbjct: 174 RERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQG 233

Query: 235 KFEEMESSFSAMVESG----------------------------------GCHPDIFTLN 260
             E        MV+ G                                  G  PD FT N
Sbjct: 234 NLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYN 293

Query: 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320
            +I+ Y   G  +K  K +      G++A + T   L  +    GM  +   + +   +R
Sbjct: 294 ILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRR 353

Query: 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380
              P +  YN +I +    G +++  E   +M+ + + P+ +TY +L+      G + + 
Sbjct: 354 GIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEA 413

Query: 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440
             ++ ++    +  D   +N +IS Y   GD++   ++   M  +   P  +T+  MI+ 
Sbjct: 414 RGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKG 473

Query: 441 YNALGMTEAAQNLENKMIA 459
               G    A++L  +M+ 
Sbjct: 474 LCLNGQGGDAEDLVKEMVG 492



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 91  QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG-LKPSV 149
           + + Q  ++I   +R++        T+  ++    K  + E A+ +F+ ML++G ++P+ 
Sbjct: 160 RGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNA 219

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            +Y AL+  Y   G L+ A     +M  + VS     V TY++ + +     R      +
Sbjct: 220 VMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMT---VATYNLFVHTLFMEGRAAEAHAL 276

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------------- 250
           + EM   G+   A TYN +I+GY K  K ++    F  MV  G                 
Sbjct: 277 VEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSM 336

Query: 251 -----------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
                            G  PD+F  N++I+++   G++++  +   E     +  D  T
Sbjct: 337 KGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVT 396

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L +     G  D+ R +++ M KR   P +V+YN +I  +   G I+   +   +M 
Sbjct: 397 YNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMM 456

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405
            +G  P  +TY +++      G     + +++++  + +  D   +  +I  
Sbjct: 457 GKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEG 508



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           K+ K + A+K+F ++   +  +A   T+T L+  L      ++   LF   +  G++P +
Sbjct: 301 KEGKEKKAMKMFEVM-VGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDL 359

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209
            +Y AL++++   G +D AF  + +M+      PD  TY+ L++      R D    ++ 
Sbjct: 360 FMYNALINSHCTGGDMDRAFEIMGEMEK-KRITPDDVTYNTLMRGLCLLGRLDEARGLIE 418

Query: 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269
           EM+  GI+   V+YNT+I GY      ++       M+   G +P + T N+MI     +
Sbjct: 419 EMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGK-GFNPTLLTYNAMIKGLCLN 477

Query: 270 GNIEKMEKWYNEFNLMGVKADIQT 293
           G     E    E    G+  D  T
Sbjct: 478 GQGGDAEDLVKEMVGNGITPDDST 501


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 149/318 (46%), Gaps = 2/318 (0%)

Query: 136 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 195
           L  +M+++G+ P+  ++    SAY + G++D+A    N M+      PD  +Y  LI + 
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQ-QGLSPDAVSYGALIDAL 423

Query: 196 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 255
            K  R D  E    +M   G+    V +++++ G     K+E++E  F  M+  G  HP+
Sbjct: 424 CKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVG-IHPN 482

Query: 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315
           I   N+++      G + + ++  +    MGV+ D+ + N L   +  AG  D+   +++
Sbjct: 483 IVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLE 542

Query: 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375
            M      P   +YN ++  + KAG I+    +F+KM   G+ P  +TY +++    +  
Sbjct: 543 GMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTK 602

Query: 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435
              +   +   + NS    D   +N I++   ++  V++  ++F  +  +    + ITF 
Sbjct: 603 RFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFN 662

Query: 436 TMIQAYNALGMTEAAQNL 453
            MI A    G  E A +L
Sbjct: 663 IMIGALLKGGRKEDAMDL 680



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 150/323 (46%), Gaps = 7/323 (2%)

Query: 121 MVMLGKC--KQPEQASLLFEVMLSDGL---KPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           +++ G C  K+ E+A  L  +M  D +    P+V  Y+ +++ +   G +D+ ++   +M
Sbjct: 170 ILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEM 229

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
                  PDV TY+ +I    K   FD  E +  +M   G++ +  TYN +I GY    K
Sbjct: 230 MD-RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGK 288

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           ++E+      M  +GG  P+  T  S+++    +G   +   +++     G+K  + T  
Sbjct: 289 WKEVVRMLEEM-SAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYG 347

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+   Y   G   +M  +++ M      P    +NI    + K G I+K  + F KM+ +
Sbjct: 348 IMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQ 407

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ P++++Y +L+ A  K G +   +    Q+ N  V  D   F+ ++         EK+
Sbjct: 408 GLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKV 467

Query: 416 GELFLTMKERHCVPDNITFATMI 438
            ELF  M      P+ + F T++
Sbjct: 468 EELFFEMLNVGIHPNIVFFNTIL 490



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 2/344 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T+T ++  L K +  ++A  +F+ M+ +G+KP++D Y  L+  Y   G   E    + +M
Sbjct: 240 TYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEM 299

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
            S    KP+  TY  L+    K  R          M   GI+ S  TY  ++ GY     
Sbjct: 300 -SAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGA 358

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
             EM    + MV + G  P+    N   SAY   G I+K    +N+    G+  D  +  
Sbjct: 359 LSEMHDLLNLMV-ANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYG 417

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
            L  +  + G  D      + M      P +V ++ ++         EK+EE F +M + 
Sbjct: 418 ALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNV 477

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+ PN + + +++    K G +M+   ++  +E   V  D   +N +I  +  AG +++ 
Sbjct: 478 GIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEA 537

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
            +L   M      PD+ ++ T++  Y   G  ++A +   KM++
Sbjct: 538 SKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLS 581



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 167/373 (44%), Gaps = 4/373 (1%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG--KCKQPEQASLLFEVMLSDGLKP 147
            +K+ + AL++  ++   Q +       +   V+ G     Q ++   LF  M+  G+ P
Sbjct: 177 NEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPP 236

Query: 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207
            V  YT ++    ++ L D A +    M   +  KP++ TY+ LI       ++  + ++
Sbjct: 237 DVVTYTTVIDGLCKAQLFDRAEAVFQQMID-NGVKPNIDTYNCLIHGYLSIGKWKEVVRM 295

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267
           L EMS  G + +  TY ++++   K  +  E    F +M+   G  P + T   M+  Y 
Sbjct: 296 LEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMI-GKGIKPSVTTYGIMLHGYA 354

Query: 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327
             G + +M    N     G+  +    NI   +Y + G+ DK   + + M+++   P  V
Sbjct: 355 TKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAV 414

Query: 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387
           +Y  +I+   K G ++  E  F +M + G+ P+ + + SLV          KV+ +  ++
Sbjct: 415 SYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEM 474

Query: 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 447
            N  +  +  FFN I+    + G V +   L  +++     PD I++ T+I  +   G  
Sbjct: 475 LNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 534

Query: 448 EAAQNLENKMIAM 460
           + A  L   M+++
Sbjct: 535 DEASKLLEGMVSV 547



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 159/349 (45%), Gaps = 5/349 (1%)

Query: 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172
           RC T++ L+    +    E     F ++L  G +    V   L++       + EA   +
Sbjct: 94  RC-TYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVL 152

Query: 173 NDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDG 229
                   C PD  +Y+IL+K  C +    + +E   ++A+        + V+Y+T+I+G
Sbjct: 153 LQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVING 212

Query: 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 289
           +    + ++  + F  M++ G   PD+ T  ++I     +   ++ E  + +    GVK 
Sbjct: 213 FFTEGQVDKPYNLFLEMMDRG-IPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349
           +I T N L   Y   G + ++  +++ M      P   TY  ++    K G   +   +F
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFF 331

Query: 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409
             M  +G+KP+  TY  ++  Y+  G + ++  +L  +  + +  +   FN   SAY + 
Sbjct: 332 DSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKC 391

Query: 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458
           G ++K  ++F  M+++   PD +++  +I A   LG  + A+   N+MI
Sbjct: 392 GIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 159/355 (44%), Gaps = 2/355 (0%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            F+ L+  L    + E+   LF  ML+ G+ P++  +  ++    + G + E    ++ +
Sbjct: 450 VFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSI 509

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
           + +   +PDV +Y+ LI         D   K+L  M  +G++  + +YNT++ GY KA +
Sbjct: 510 ECMG-VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGR 568

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
            +   S F  M+ S G  P + T N+++     +    + ++ Y      G K DI T N
Sbjct: 569 IDSAYSHFRKML-SNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYN 627

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355
           I+     ++   D+   +   +  +     ++T+NI+I    K G  E   + F  +   
Sbjct: 628 IILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 687

Query: 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415
           G+  N +TY  +V    + G + + DS+   +E +    ++   N ++      GD+ + 
Sbjct: 688 GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 747

Query: 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 470
           G     + ER+   +  T + +I  +++      A++L  K   + E +   LI+
Sbjct: 748 GAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK 802



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 143/315 (45%), Gaps = 2/315 (0%)

Query: 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 184
            KC   ++A  +F  M   GL P    Y AL+ A  + G +D+A    N M +     PD
Sbjct: 389 AKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMIN-EGVTPD 447

Query: 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244
           +  +S L+       +++ +E++  EM  +GI  + V +NTI+    K  +  E +    
Sbjct: 448 IVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVD 507

Query: 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304
           + +E  G  PD+ + N++I  +  +G I++  K       +G+K D  + N L   Y +A
Sbjct: 508 S-IECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKA 566

Query: 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364
           G  D   S    M      P VVTYN ++    +     + +E +  M + G K +  TY
Sbjct: 567 GRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTY 626

Query: 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424
             +++   K+  + +   + + + +  + L+   FN +I A  + G  E   +LF  +  
Sbjct: 627 NIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 686

Query: 425 RHCVPDNITFATMIQ 439
              V + +T+  +++
Sbjct: 687 NGLVQNVVTYRLVVE 701



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/377 (19%), Positives = 151/377 (40%), Gaps = 34/377 (9%)

Query: 116  TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            TF  ++  L K  + E A  LF  + ++GL  +V  Y  +V    + G L+E  S  + M
Sbjct: 660  TFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAM 719

Query: 176  KSVSDCKPDVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYG-- 231
            +  +   P+    + L++     HR D+      L+++        A T + +I  +   
Sbjct: 720  EK-NGTAPNSQMLNALVRRL--LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSD 776

Query: 232  --------------------------KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265
                                      KA++ ++  S F  M+   G  PD+ T N+++  
Sbjct: 777  EYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMK-GLTPDVVTYNTILHG 835

Query: 266  YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325
               +G   + ++ Y        + +I T NI+     ++   D+   +   +  +     
Sbjct: 836  LFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN 895

Query: 326  VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 385
            ++T+NI+I    K G  E   + F  +   G+ P+ +TY  +     + G + + D +  
Sbjct: 896  IITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFL 955

Query: 386  QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445
             +E S   LD+   N ++    Q GD+ + G     + E++   +  T + +I  ++   
Sbjct: 956  TMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGE 1015

Query: 446  MTEAAQNLENKMIAMKE 462
                A++L  K   + E
Sbjct: 1016 YQHHAKSLPEKYRLLNE 1032


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 157/354 (44%), Gaps = 6/354 (1%)

Query: 98  LKIFGLLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155
           L +F  +R       R    T+  L+         +Q+ +L   ML  G+ P    Y  +
Sbjct: 233 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHI 292

Query: 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215
           V A+  +G L  A    ++M +      D   Y  L+++ T+         +L +M   G
Sbjct: 293 VDAFASAGNLSRAAELFSEMAATGHTA-DASAYLGLMEAHTRVGATADAVAVLRQMQADG 351

Query: 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275
              +A TY  ++D YG+  +F+ +   F  M  +    PD  T N +   +G+ G  +++
Sbjct: 352 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFKEV 409

Query: 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335
            + +++    GV+ D+ T   +  + G  G++   R V+++M +    PT   Y  ++E 
Sbjct: 410 VELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEA 469

Query: 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395
            G A   E+    F  M   G  P   TY +L  AY++ GL  + ++I  ++ N+  I  
Sbjct: 470 LGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQK 529

Query: 396 T-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448
           +   F+ +I AY Q   ++   + ++ M++    PD  +   ++ AY   G+ +
Sbjct: 530 SKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 583



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 167/369 (45%), Gaps = 12/369 (3%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           ++  WQ +L++F  +++Q W +        ++ +LG+ + P       EV      +   
Sbjct: 115 RRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVFHDLPAESRT 173

Query: 150 DV-YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR----FDLI 204
            + YT+L++AY ++ L +EA + ++ MK+ +   P   TY+ ++ +C +       FD++
Sbjct: 174 ALSYTSLIAAYARNALHEEARALLDQMKA-TGVAPTAATYNTVLAACARATDPPVPFDML 232

Query: 205 EKILAEMSYLG---IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261
             + AEM +     +     TYNT++         ++ E     M+E+ G  PD  +   
Sbjct: 233 LGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA-GVSPDTVSYRH 291

Query: 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321
           ++ A+ ++GN+ +  + ++E    G  AD      L +++ R G      +V+  MQ   
Sbjct: 292 IVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADG 351

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             PT  TY ++++ +G+ G  + + + F++M+   + P++ TY  L   +   G   +V 
Sbjct: 352 CAPTAATYRVLLDLYGRQGRFDGVRQLFREMR-TAVPPDTATYNVLFRVFGDGGFFKEVV 410

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            +   +  + V  D      +++A G  G      E+   M     VP    +  +++A 
Sbjct: 411 ELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEAL 470

Query: 442 NALGMTEAA 450
               M E A
Sbjct: 471 GHAAMYEEA 479



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 164

Query: 212 SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270
             L  E  +A++Y ++I  Y +    EE  +    M ++ G  P   T N++++A   + 
Sbjct: 165 HDLPAESRTALSYTSLIAAYARNALHEEARALLDQM-KATGVAPTAATYNTVLAACARAT 223

Query: 271 N----IEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
           +     + +   + E        V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 224 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 283

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P  V+Y  +++ F  AG++ +  E F +M   G   ++  Y  L+ A+++ G      ++
Sbjct: 284 PDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAV 343

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           LRQ++          +  ++  YG+ G  + + +LF  M+     PD  T+  + + +  
Sbjct: 344 LRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPDTATYNVLFRVFGD 402

Query: 444 LGMTEAAQNLENKMI 458
            G  +    L + M+
Sbjct: 403 GGFFKEVVELFHDML 417



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSY 301
           F  M     C PD      +I   G  G    ++K    F+ +  ++    +   L  +Y
Sbjct: 126 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFHDLPAESRTALSYTSLIAAY 184

Query: 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKHRG- 356
            R  ++++ R+++D M+     PT  TYN V+    +A       + +   F +M+H   
Sbjct: 185 ARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDAS 244

Query: 357 --MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
             ++P+  TY +L++A +   L  + + +L  +  + V  DT  +  I+ A+  AG++ +
Sbjct: 245 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 304

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
             ELF  M       D   +  +++A+  +G T  A  +  +M A
Sbjct: 305 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 349



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 112/304 (36%), Gaps = 40/304 (13%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           T   +M   G       A  + E M  +G+ P+ D YT LV A G + + +EA+   N M
Sbjct: 427 TCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMM 486

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235
             +                                    G   +  TYN +   Y +   
Sbjct: 487 TEI------------------------------------GSLPTLETYNALAFAYARGGL 510

Query: 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295
           F+E E+ FS M  + G      + +++I AY     ++   K Y E        D ++L 
Sbjct: 511 FQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLE 570

Query: 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-H 354
            +  +Y  AG+ D+ +   + +Q     P+V+ Y +++  + +        +  ++MK +
Sbjct: 571 GVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTN 630

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA---YGQAGD 411
           R    + +    +   Y  +     V+ +L             FFN ++     +GQ G 
Sbjct: 631 RASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGR 690

Query: 412 VEKM 415
             ++
Sbjct: 691 AARV 694


>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
 gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
          Length = 731

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 167/372 (44%), Gaps = 34/372 (9%)

Query: 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 174
           +TF  ++   G+  +  +AS +F  M+  G++ +   + A++  YG++G   EA   +  
Sbjct: 230 ETFNTMISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTK 289

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           MK   DC PDV TY+ LI+   K  + +L+   L  M   G+    VT+ T+I  Y    
Sbjct: 290 MKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANN 349

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN----------- 283
              + E+    M E  G   D      MI+ Y  + ++ K E  +   +           
Sbjct: 350 VVWKAEALVQEM-EGSGFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHSRGGLEVSTYV 408

Query: 284 -LMGVKADIQTL---------------------NILTKSYGRAGMYDKMRSVMDFMQKRF 321
            +M V A+ + L                     N++ K+YG    +    +V + M+K  
Sbjct: 409 GVMDVYAEHKCLDQAREVFELAKNAGLKTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDG 468

Query: 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381
             P   ++N +I+   K   +E ++     +K  G KP+  +  S+VS Y   G + + +
Sbjct: 469 ASPNEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAE 528

Query: 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + +++  S V  D   ++ +++AY +AG   +  +   ++K    VPD I + +M++ Y
Sbjct: 529 RVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLY 588

Query: 442 NALGMTEAAQNL 453
           + LG+T  A+ +
Sbjct: 589 SNLGLTAEAEKI 600



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 166/393 (42%), Gaps = 47/393 (11%)

Query: 90  KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV 149
           +Q+ W+ A+++F   ++Q  Y+A    +  L+  LG+  + E     +  ML + + P++
Sbjct: 93  EQRDWRKAIEVFSWFQRQDNYEANVFLYNILLRTLGRAAKWELLQKYWSEMLGERVPPTI 152

Query: 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD---VYTY------------------ 188
             Y+ LV  +G++G+ DEA      M   S  +PD   V TY                  
Sbjct: 153 FTYSILVDVHGRAGMKDEAIRFYRHMIE-SGVEPDEVMVSTYMNLQRRFGDLEEAEKAFW 211

Query: 189 ----SILIKSCTK-----------------FHRFDLIEKILAEMSYLGIECSAVTYNTII 227
                 L+   TK                   +F    K+ AEM   G+E + VT+N +I
Sbjct: 212 GLFSENLVDGTTKRPENPETFNTMISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNAMI 271

Query: 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287
             YGKA +  E E   + M +   C PD+ T NS+I  Y  +  +E +          GV
Sbjct: 272 HVYGKAGRTREAELLVTKMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGV 331

Query: 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347
             D  T   L  +Y    +  K  +++  M+   FF     Y ++I  + +A  + K E 
Sbjct: 332 SPDQVTFRTLISAYAANNVVWKAEALVQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAES 391

Query: 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP-FFNCIISAY 406
            F+ +  RG    S TY  ++  Y++   + +   +    +N+   L TP  +N ++ AY
Sbjct: 392 VFRFLHSRGGLEVS-TYVGVMDVYAEHKCLDQAREVFELAKNAG--LKTPSLYNVMMKAY 448

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439
           G          +F  M++    P+  +F ++IQ
Sbjct: 449 GACDRFTDAVTVFEAMEKDGASPNEASFNSLIQ 481



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 155/339 (45%), Gaps = 7/339 (2%)

Query: 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176
           +T ++ M  + +   +A  +F  + S G    V  Y  ++  Y +   LD+A       K
Sbjct: 373 YTVMIAMYVRARDVSKAESVFRFLHSRG-GLEVSTYVGVMDVYAEHKCLDQAREVFELAK 431

Query: 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236
           +     P +Y  ++++K+     RF     +   M   G   +  ++N++I    K +  
Sbjct: 432 NAGLKTPSLY--NVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQLLCKGRLL 489

Query: 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296
           E ++     +V++ G  P + + +S++S YG+ G + + E+ + E    GV+AD+   + 
Sbjct: 490 EILQRVL-VLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSA 548

Query: 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356
           L  +Y  AG   + +  +D ++   F P  + Y  +++ +   G   + E+ ++++    
Sbjct: 549 LLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEKIYEEISR-- 606

Query: 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416
           + P+     ++++ Y K+G+  + + + R ++     L+      ++  Y +AG +E+  
Sbjct: 607 LSPDVFAANTMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQGL 666

Query: 417 ELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 454
           ++   M  R  + D   F  +I  Y   G M EA + L+
Sbjct: 667 DVARVMSRRFLITDARAFNGVIAMYVKAGLMREALEALK 705



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 148/332 (44%), Gaps = 7/332 (2%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLK-PSVDVYTALVSAYGQSGLLDEAFSTIND 174
           T+  +M +  + K  +QA  +FE+  + GLK PS+  Y  ++ AYG      +A +    
Sbjct: 406 TYVGVMDVYAEHKCLDQAREVFELAKNAGLKTPSL--YNVMMKAYGACDRFTDAVTVFEA 463

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234
           M+      P+  +++ LI+   K    ++++++L  +   G + S  + ++++  YG   
Sbjct: 464 MEK-DGASPNEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMG 522

Query: 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 294
           +  E E  F  M+ SG    D+   +++++AY  +G   + ++  +     G   D    
Sbjct: 523 RVREAERVFKEMLASG-VEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVY 581

Query: 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354
             + K Y   G+  +   + + + +    P V   N ++  + K+G   + E+ F+ M+ 
Sbjct: 582 TSMMKLYSNLGLTAEAEKIYEEISR--LSPDVFAANTMLNLYIKSGMFTEAEQLFRAMQR 639

Query: 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414
                N +    ++  Y +AG I +   + R +    +I D   FN +I+ Y +AG + +
Sbjct: 640 GKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARAFNGVIAMYVKAGLMRE 699

Query: 415 MGELFLTMKERHCVPDNITFATMIQAYNALGM 446
             E    M+    VP   TF+   +     GM
Sbjct: 700 ALEALKEMRRAGLVPSRSTFSCFEEILERAGM 731


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 153/335 (45%), Gaps = 2/335 (0%)

Query: 107 QQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166
           ++ + A   T   L+  L K    ++A  L + ML  G       Y  L+S   + G ++
Sbjct: 484 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 543

Query: 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226
           E F    +M      +PD +TY++LI    +  + D    +  E     +  +  TY  +
Sbjct: 544 EGFKLRGEMVK-QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVM 602

Query: 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286
           IDGY KA K EE E  F+ ++ +     +    N++I AY  +GN  +  K +++    G
Sbjct: 603 IDGYCKADKIEEGEKLFTELL-TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG 661

Query: 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +     T + L       G  +  + ++D M+K    P VV Y  +I  + K G ++K+ 
Sbjct: 662 IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVV 721

Query: 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406
              ++M    + PN ITY  ++  YSK+G +     +L ++    ++ DT  +N + + +
Sbjct: 722 NVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGF 781

Query: 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441
            + G +E+  ++   M +     D IT+ T++  +
Sbjct: 782 CKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW 816



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 151/326 (46%), Gaps = 4/326 (1%)

Query: 125 GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+ + +    L+  +L  G   ++    AL+    ++G + EA   +  M       
Sbjct: 465 GLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVL 524

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  TY+ LI  C K  + +   K+  EM   GIE    TYN +I G  +  K +E  + 
Sbjct: 525 -DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNL 583

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
           ++   +S    P+++T   MI  Y  +  IE+ EK + E     ++ +    N L ++Y 
Sbjct: 584 WNE-CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYC 642

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           R G   +   + D M+ +   PT  TY+ +I      G +E  +    +M+  G+ PN +
Sbjct: 643 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 702

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y +L+  Y K G + KV ++L+++ + D+  +   +  +I  Y ++GD++   +L   M
Sbjct: 703 CYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM 762

Query: 423 KERHCVPDNITFATMIQAYNALGMTE 448
             +  VPD +T+  +   +   G  E
Sbjct: 763 VGKGIVPDTVTYNVLTNGFCKEGKIE 788



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 4/286 (1%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+   E+   L   M+  G++P    Y  L+    + G LDEA +  N+ KS  D  
Sbjct: 535 GCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKS-RDLV 593

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
           P+VYTY ++I    K  + +  EK+  E+    +E ++V YNT+I  Y +     E    
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
              M  S G  P   T +S+I    N G +E  +   +E    G+  ++     L   Y 
Sbjct: 654 HDDM-RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 712

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G  DK+ +V+  M      P  +TY ++I+ + K+G ++   +   +M  +G+ P+++
Sbjct: 713 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 772

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
           TY  L + + K G I +   I   +    + LD   +  ++  + Q
Sbjct: 773 TYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQ 818



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 191/487 (39%), Gaps = 49/487 (10%)

Query: 17  LPKFYKEPVFRIQAIKRSPGPIQELG---IQKEAEKDLSKILRTEFAIKNIEKKVSSKKY 73
           LP  + +P  R   I  +   + E+G   +   A   L  +  T+F        +   ++
Sbjct: 143 LPVLFGDPKNRHIEIASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRF 202

Query: 74  ---KNLWP--KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK 128
              K ++P  K     L   +K  + + +  +F  +RQ          F+  +    K  
Sbjct: 203 LANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQG--VSPDVYLFSTAINAFCKGG 260

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYT 187
           + E A  LF  M   G+ P+V  Y  L+    + G LDEAF     M  V D     + T
Sbjct: 261 KVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKM--VKDGVNATLIT 318

Query: 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247
           YS+LI    K  +F+    +L E    G   + V YNT+IDGY K     +       MV
Sbjct: 319 YSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV 378

Query: 248 ESGGCHPDIFTLNSMISAYGNSGNIEKME------------------------------- 276
            S G +P+  TLNS+I  +   G +E+ E                               
Sbjct: 379 -SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 437

Query: 277 ----KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332
               ++  E  L  ++ +   L  L     + G +     +   + ++ F   +VT N +
Sbjct: 438 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 497

Query: 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392
           I    K G++++     KKM  RG   + ITY +L+S   K G + +   +  ++    +
Sbjct: 498 IHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 557

Query: 393 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452
             DT  +N +I    + G +++   L+   K R  VP+  T+  MI  Y      E  + 
Sbjct: 558 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 617

Query: 453 LENKMIA 459
           L  +++ 
Sbjct: 618 LFTELLT 624



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 152/339 (44%), Gaps = 6/339 (1%)

Query: 122 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 179
           ++ G CK  Q EQA  + E MLS G   +   +T ++     +   + A   + +M  + 
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREML-LR 450

Query: 180 DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238
           + +P+    + L+   C +    D +E +   +   G   + VT N +I G  K    +E
Sbjct: 451 NMRPNDGLLTTLVGGLCKEGKHSDAVE-LWFRLLEKGFGANLVTTNALIHGLCKTGNMQE 509

Query: 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298
                  M+E G    D  T N++IS     G +E+  K   E    G++ D  T N+L 
Sbjct: 510 AVRLLKKMLERGFVL-DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568

Query: 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 358
               R G  D+  ++ +  + R   P V TY ++I+ + KA  IE+ E+ F ++  + ++
Sbjct: 569 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLE 628

Query: 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418
            NS+ Y +L+ AY + G  ++   +   + +  +   T  ++ +I      G +E    L
Sbjct: 629 LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCL 688

Query: 419 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
              M++   +P+ + +  +I  Y  LG  +   N+  +M
Sbjct: 689 IDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM 727



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 16/278 (5%)

Query: 83  EALDEAIKQKKWQLALKIFGLLRQQQ-------WYQARCQ-----TFTKLMVMLGKCK-- 128
           E + + I+   +   L I G+ R  +       W + + +      +T  +++ G CK  
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 188
           + E+   LF  +L+  L+ +  VY  L+ AY ++G   EAF   +DM+S     P   TY
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRS-KGIPPTTATY 669

Query: 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248
           S LI       R +  + ++ EM   G+  + V Y  +I GY K  + +++ +    M  
Sbjct: 670 SSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM-S 728

Query: 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 308
           S   HP+  T   MI  Y  SG+++   K  +E    G+  D  T N+LT  + + G  +
Sbjct: 729 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 788

Query: 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 346
           +   + D+M +       +TY  ++  + +   +   E
Sbjct: 789 EGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTNQE 826


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 160/360 (44%), Gaps = 16/360 (4%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
            ++ L+ M GK  + E A+  F  +   G  P    Y  L+ A+ + G++D+A     + 
Sbjct: 166 AYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEA 225

Query: 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY----- 230
           +  S C  D   +  +I+   K    D    +L  M  +G++ + + Y ++++ +     
Sbjct: 226 QR-SFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQ 284

Query: 231 --GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288
             G  K FEEM+ S     ES        T  +M++ Y  +G     E+   +   +G +
Sbjct: 285 PMGAIKLFEEMQESNCRFGES--------TYITMLNVYSKAGFHSAAEELLAKMRQLGFR 336

Query: 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348
            ++   + L   YG+ G   +   +   M+++     ++ YN +++ +GKAG I   E  
Sbjct: 337 RNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERL 396

Query: 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408
             ++K   + P+++TY +L++AY++ G   +   +  Q     + LD      +I+ YG+
Sbjct: 397 MAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGK 456

Query: 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 468
           A    K+ EL   M +    PD     T+++ Y   GM E A  L  K+  +    G  L
Sbjct: 457 ARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELLRKINELGPLEGNTL 516



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 143/315 (45%), Gaps = 2/315 (0%)

Query: 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202
           DG +P   +Y A      +      A   + D     +C PD+  Y+++IK      RF 
Sbjct: 18  DGFEPHFHLYVAFAHCLMRVQKW-VALEILVDEMIGKNCPPDIKFYALVIKEAINTGRFQ 76

Query: 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262
             +   ++M  LG     V YN +I  YGK   F +    FS + + G   PD  T  ++
Sbjct: 77  TAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEG-LLPDSGTYCAV 135

Query: 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 322
           +SA    GNI+K  +   E    G+K D    +IL   +G+AG ++   +    +Q   +
Sbjct: 136 LSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGY 195

Query: 323 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382
            P  V YN +I  F K G +++    FK+ +      + + + +++  Y+KA +  +   
Sbjct: 196 LPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALH 255

Query: 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442
           +L+ ++   +  +   +  +++A+ +A       +LF  M+E +C     T+ TM+  Y+
Sbjct: 256 VLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYS 315

Query: 443 ALGMTEAAQNLENKM 457
             G   AA+ L  KM
Sbjct: 316 KAGFHSAAEELLAKM 330



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 126/269 (46%), Gaps = 5/269 (1%)

Query: 175 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT--YNTIIDGYGK 232
           +KS    +P  + Y        +  ++  +E ++ EM  +G  C      Y  +I     
Sbjct: 14  VKSQDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEM--IGKNCPPDIKFYALVIKEAIN 71

Query: 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292
             +F+  +  FS M +  GC PDI   N +I  YG  GN  +  K++++    G+  D  
Sbjct: 72  TGRFQTAQHWFSKM-KLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSG 130

Query: 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352
           T   +  +  + G  DK    +  M++    P  V Y+I+I+ FGKAG  E     F+++
Sbjct: 131 TYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFREL 190

Query: 353 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412
           +  G  P+S+ Y +L+ A++K G++ +   + ++ + S  + D   F  +I  Y +A   
Sbjct: 191 QMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMA 250

Query: 413 EKMGELFLTMKERHCVPDNITFATMIQAY 441
           ++   +   MKE    P+ + + +++ A+
Sbjct: 251 DQALHVLKLMKEIGLQPNELGYGSVLNAF 279



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 2/181 (1%)

Query: 106 QQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165
           +Q  ++     ++ L+ M GK  + ++A+ LF  M   G K ++ VY  ++  YG++G +
Sbjct: 331 RQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRI 390

Query: 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225
           ++A   + ++K  S   PD  TY+ LI +  +  RF+   ++  +    G++   +    
Sbjct: 391 NDAERLMAELKD-SKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAI 449

Query: 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285
           +I+ YGKA+++ ++      M +S G  PD   L +++  Y + G  E   +   + N +
Sbjct: 450 MINVYGKARQYSKLAELLEVMPKS-GIQPDTRILKTVVEIYEDGGMCENAAELLRKINEL 508

Query: 286 G 286
           G
Sbjct: 509 G 509


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 161/337 (47%), Gaps = 4/337 (1%)

Query: 125 GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 182
           G CK+   E A+ +   M S GLKP+V  Y  ++     +    EA   +++M    DC 
Sbjct: 295 GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCP 353

Query: 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 242
            D  T++IL+    +    D + ++L +M   G     +TY T+I+G+ K    +E    
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 243 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302
             +M  S GC P+  +   ++    ++G     E+  ++    G   +  T N L     
Sbjct: 414 LKSM-SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362
           + G+ ++   ++  M      P +++Y+ VI+  GKAG  E+  E    M ++G+ PN+I
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422
            Y S+  A S+ G + KV  +   ++++ +  D   +N +IS+  +  + ++  + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 423 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459
               C+P+  T+  +I+   + G+ + AQ L +++ +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCS 629



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203
           G +  +  Y A++     +    +    +++M  V DC P++ T++ LI    +   F+ 
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV-DCAPNIVTFNTLIGYLCRNGLFER 269

Query: 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263
           + ++LA+MS  G       Y TIIDG  K    E      + M  S G  P++   N+++
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLKPNVVCYNTVL 328

Query: 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323
               ++   ++ E+  +E        D  T NIL   + + G+ D++  +++ M      
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383
           P V+TY  VI  F K G I++     K M   G KPN+++Y  ++     AG  +  + +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443
           + Q+       +   FN +I+   + G VE+  EL   M    C PD I+++T+I     
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 444 LGMTEAAQNLENKMI 458
            G TE A  L N M+
Sbjct: 509 AGKTEEALELLNVMV 523



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 207
           V  Y A+V+ Y ++G L  A      +       P+ YT+  +++  CT+    D +E +
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVPV----PPNAYTFFPVVRGLCTRGRIADALE-V 133

Query: 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKF-------EEMESS------------FSAMVE 248
           L EMS+ G       Y+ I++   ++  F       E M +              +A+ E
Sbjct: 134 LDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 249 SG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293
            G               GC  DI + N+++     +     +E+  +E   +    +I T
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353
            N L     R G+++++  V+  M +    P +  Y  +I+   K GH+E   E   +M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413
             G+KPN + Y +++     A    + + +L ++   D  LD   FN ++  + Q G V+
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 414 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457
           ++ EL   M    C+PD IT+ T+I  +   G+ + A  L   M
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175
           TF  L+  L K    EQA  L + ML +G  P +  Y+ ++   G++G  +EA   +N M
Sbjct: 463 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 176 --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 233
             K +S   P+   YS +  + ++  R + + ++   +    I   AV YN +I    K 
Sbjct: 523 VNKGIS---PNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKR 579

Query: 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282
            + +     F+ MV S GC P+  T   +I    + G  ++ ++  +E 
Sbjct: 580 WETDRAIDFFAYMV-SNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,821,634,819
Number of Sequences: 23463169
Number of extensions: 265201990
Number of successful extensions: 909719
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7626
Number of HSP's successfully gapped in prelim test: 4865
Number of HSP's that attempted gapping in prelim test: 710758
Number of HSP's gapped (non-prelim): 71493
length of query: 471
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 325
effective length of database: 8,933,572,693
effective search space: 2903411125225
effective search space used: 2903411125225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)