BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012111
         (471 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
 pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
           Akr14a1 With Nadp And Citrate
          Length = 366

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 9/54 (16%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKP---------VLEALDEAIKQ 91
           AE++  ++LR +FA    E  +S+K   ++WP P         +L +LD+++K+
Sbjct: 93  AEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKR 146


>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
 pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
 pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
 pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
           Akr14a1
          Length = 346

 Score = 33.1 bits (74), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 9/54 (16%)

Query: 47  AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKP---------VLEALDEAIKQ 91
           AE++  ++LR +FA    E  +S+K   ++WP P         +L +LD+++K+
Sbjct: 73  AEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKR 126


>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
 pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
 pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
 pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
          Length = 165

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG--MYD-------KM 310
           N M      SG +E  E       LMG +   QTL  + K Y + G   +D       K+
Sbjct: 75  NFMTVDQDGSGTVEHHE-LRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKL 133

Query: 311 RSVMDFMQKR 320
           R++ DF +KR
Sbjct: 134 RALTDFFKKR 143


>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
           Calcium
 pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
           Calcium
 pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
           Calcium
          Length = 165

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG--MYD-------KM 310
           N M      SG +E  E       LMG +   QTL  + K Y + G   +D       K+
Sbjct: 75  NFMTVDQDGSGTVEHHE-LRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKL 133

Query: 311 RSVMDFMQKR 320
           R++ DF +KR
Sbjct: 134 RALTDFFRKR 143


>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase From Mesorhizobium Loti At 2.0 A
           Resolution
 pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase From Mesorhizobium Loti At 2.0 A
           Resolution
 pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase Complexed With Pyridoxamine
 pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase Complexed With Pyridoxamine
 pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase Complexed With Pyridoxal
 pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase Complexed With Pyridoxal
 pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase Complexed With Pyridoxyl-L-Alanine
 pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
           Aminotransferase Complexed With Pyridoxyl-L-Alanine
          Length = 392

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 149 VDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVY 186
           +D   ALVSA+G   L+ +A S+   MK+   DCK D+Y
Sbjct: 153 IDAIGALVSAHGAY-LIVDAVSSFGGMKTHPEDCKADIY 190


>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
           Inositol 1,4,5- Trisphosphate 3-kinase C
          Length = 259

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)

Query: 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM------KSVSDCK 182
           Q EQ SL  E ++ D L+P V  Y  +V   GQ+      F+ + D+       S+ DCK
Sbjct: 11  QCEQRSL--EQLMKDPLRPFVPAYYGMVLQDGQT------FNQMEDLLADFEGPSIMDCK 62

Query: 183 PDVYTY--SILIKSCTKFH-RFDLIEKILA 209
               TY    L+K+  +   R D+ EK++A
Sbjct: 63  MGSRTYLEEELVKARERPRPRKDMYEKMVA 92


>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
           Chain 1
          Length = 198

 Score = 28.5 bits (62), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 333 IETFGKAGHIEKME---EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           +E  G    IEKM+      K  KH  +  N+I   S +S      ++    ++++++EN
Sbjct: 28  VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN 87

Query: 390 SDVILDT 396
            D + DT
Sbjct: 88  LDAVADT 94


>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
           Arm Dynein Light Chain 1
          Length = 199

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 333 IETFGKAGHIEKME---EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389
           +E  G    IEKM+      K  KH  +  N+I   S +S      ++    ++++++EN
Sbjct: 29  VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN 88

Query: 390 SDVILDT 396
            D + DT
Sbjct: 89  LDAVADT 95


>pdb|4GER|A Chain A, Crystal Structure Of Gentlyase, The Neutral
           Metalloprotease Of Paenibacillus Polymyxa
 pdb|4GER|B Chain B, Crystal Structure Of Gentlyase, The Neutral
           Metalloprotease Of Paenibacillus Polymyxa
 pdb|4B52|A Chain A, Crystal Structure Of Gentlyase, The Neutral
           Metalloprotease Of Paenibacillus Polymyxa
 pdb|4B52|B Chain B, Crystal Structure Of Gentlyase, The Neutral
           Metalloprotease Of Paenibacillus Polymyxa
          Length = 304

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 9/52 (17%)

Query: 145 LKPSVDVYTALVSAYGQSGLLDEAFSTI--NDMKS----VSDCKPDVYTYSI 190
           L   V  YT+ +  YG+SG L+EAFS +  ND++     V D   D+YT +I
Sbjct: 137 LTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQRKNWLVGD---DIYTPNI 185


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,148,941
Number of Sequences: 62578
Number of extensions: 509978
Number of successful extensions: 1458
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 12
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)