Query 012111
Match_columns 471
No_of_seqs 687 out of 2648
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 23:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.8E-61 1E-65 477.0 54.5 416 46-468 375-791 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.5E-59 3.2E-64 466.5 53.6 389 76-467 435-848 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-55 3.5E-60 435.2 44.0 399 50-463 96-526 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.2E-55 7E-60 433.1 43.2 375 79-467 88-463 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.7E-53 1.7E-57 425.9 41.9 397 52-465 132-624 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3.2E-52 6.9E-57 421.5 43.3 359 82-459 125-483 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-25 8.6E-30 229.0 52.8 369 80-463 501-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-25 7.7E-30 229.3 52.0 388 53-458 511-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.6E-22 1.2E-26 184.6 37.0 299 123-464 44-351 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-21 2.5E-26 182.5 38.3 265 195-464 45-315 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.9E-20 4.1E-25 182.6 46.8 334 80-425 44-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-19 2.3E-24 178.1 49.9 370 84-463 133-574 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 5.2E-21 1.1E-25 170.9 32.7 372 48-440 119-499 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 4.9E-21 1.1E-25 171.0 32.0 372 79-467 117-492 (966)
15 PRK15174 Vi polysaccharide exp 99.9 2.2E-19 4.7E-24 175.3 45.0 365 89-465 16-386 (656)
16 PRK10049 pgaA outer membrane p 99.9 1.1E-18 2.4E-23 174.0 49.9 403 47-465 21-461 (765)
17 PRK11447 cellulose synthase su 99.9 6.3E-19 1.4E-23 183.8 48.1 360 87-462 278-702 (1157)
18 PRK11447 cellulose synthase su 99.9 1.6E-18 3.5E-23 180.7 50.7 394 50-459 278-739 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.9 7.2E-18 1.6E-22 165.2 49.6 368 46-425 132-571 (615)
20 PRK14574 hmsH outer membrane p 99.9 9.8E-17 2.1E-21 157.2 50.0 410 43-465 36-518 (822)
21 PRK10049 pgaA outer membrane p 99.8 1.2E-15 2.6E-20 152.4 47.8 381 45-441 53-470 (765)
22 PRK14574 hmsH outer membrane p 99.8 1.5E-15 3.3E-20 149.0 45.9 378 77-464 33-483 (822)
23 PRK09782 bacteriophage N4 rece 99.8 4.3E-14 9.2E-19 141.8 48.2 346 90-464 354-710 (987)
24 KOG4422 Uncharacterized conser 99.8 7.7E-15 1.7E-19 126.2 36.1 345 111-462 204-592 (625)
25 PRK09782 bacteriophage N4 rece 99.8 4.7E-14 1E-18 141.5 47.2 358 80-465 315-677 (987)
26 KOG2076 RNA polymerase III tra 99.8 4.6E-14 1E-18 132.4 41.4 369 85-459 146-554 (895)
27 KOG4422 Uncharacterized conser 99.8 9.8E-14 2.1E-18 119.6 36.5 361 75-443 204-608 (625)
28 KOG2002 TPR-containing nuclear 99.7 1.3E-13 2.8E-18 130.4 38.4 377 81-465 310-750 (1018)
29 PRK10747 putative protoheme IX 99.7 2.1E-13 4.6E-18 125.8 37.1 285 162-461 97-391 (398)
30 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.2E-18 127.6 35.7 292 161-461 96-400 (409)
31 PRK10747 putative protoheme IX 99.7 5.8E-13 1.3E-17 123.0 37.2 288 91-422 97-387 (398)
32 KOG2003 TPR repeat-containing 99.7 4E-13 8.7E-18 116.7 31.7 350 87-446 246-709 (840)
33 TIGR00540 hemY_coli hemY prote 99.7 7.9E-13 1.7E-17 122.8 36.4 292 89-422 95-396 (409)
34 KOG2003 TPR repeat-containing 99.7 3.7E-13 8.1E-18 116.9 31.2 372 81-463 204-692 (840)
35 KOG2002 TPR-containing nuclear 99.7 1.8E-12 3.9E-17 122.9 37.2 357 93-462 251-711 (1018)
36 KOG0495 HAT repeat protein [RN 99.7 6E-11 1.3E-15 108.0 44.6 306 151-467 518-853 (913)
37 PF13429 TPR_15: Tetratricopep 99.7 5.9E-16 1.3E-20 136.6 12.8 160 223-385 113-272 (280)
38 KOG0547 Translocase of outer m 99.7 2.9E-12 6.2E-17 112.5 34.7 363 86-461 123-567 (606)
39 KOG1915 Cell cycle control pro 99.7 1.4E-10 3E-15 101.8 44.4 203 255-462 321-538 (677)
40 KOG1126 DNA-binding cell divis 99.7 6.3E-14 1.4E-18 127.5 24.9 286 164-466 334-626 (638)
41 KOG0495 HAT repeat protein [RN 99.7 2E-11 4.3E-16 111.1 39.6 379 77-467 478-887 (913)
42 PF13429 TPR_15: Tetratricopep 99.7 1.6E-15 3.4E-20 133.9 13.2 260 191-459 14-276 (280)
43 COG2956 Predicted N-acetylgluc 99.6 4.9E-12 1.1E-16 105.4 31.6 281 77-371 35-325 (389)
44 COG2956 Predicted N-acetylgluc 99.6 3.7E-12 8.1E-17 106.1 30.2 226 127-355 48-278 (389)
45 KOG1155 Anaphase-promoting com 99.6 7.6E-11 1.7E-15 103.1 39.4 333 111-461 161-496 (559)
46 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.4E-16 116.8 36.6 334 117-458 142-510 (895)
47 COG3071 HemY Uncharacterized e 99.6 2.2E-11 4.8E-16 104.7 34.9 292 162-465 97-395 (400)
48 KOG1126 DNA-binding cell divis 99.6 8.4E-13 1.8E-17 120.3 26.8 200 219-424 420-619 (638)
49 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.7E-16 103.4 34.9 292 91-423 97-388 (400)
50 KOG1155 Anaphase-promoting com 99.6 4.8E-11 1E-15 104.3 31.5 314 90-423 176-493 (559)
51 KOG1915 Cell cycle control pro 99.5 1.1E-08 2.4E-13 90.2 42.5 241 217-465 319-590 (677)
52 TIGR02521 type_IV_pilW type IV 99.5 4.9E-11 1.1E-15 102.6 27.8 201 256-460 31-232 (234)
53 KOG1174 Anaphase-promoting com 99.5 4E-09 8.6E-14 91.3 36.5 312 146-466 191-506 (564)
54 PRK12370 invasion protein regu 99.5 1.8E-10 4E-15 111.2 31.4 267 183-461 254-536 (553)
55 KOG3785 Uncharacterized conser 99.5 8.7E-10 1.9E-14 93.4 30.7 394 48-465 29-495 (557)
56 PRK12370 invasion protein regu 99.5 1.1E-10 2.4E-15 112.7 29.5 147 130-282 320-467 (553)
57 KOG1129 TPR repeat-containing 99.5 1.2E-11 2.7E-16 103.2 19.5 226 191-423 229-456 (478)
58 KOG0547 Translocase of outer m 99.5 1.5E-09 3.2E-14 95.9 33.0 361 52-424 126-565 (606)
59 TIGR02521 type_IV_pilW type IV 99.5 1.6E-10 3.4E-15 99.5 27.2 57 189-246 69-125 (234)
60 KOG1173 Anaphase-promoting com 99.4 4.6E-09 9.9E-14 94.5 35.4 382 73-464 44-522 (611)
61 KOG1129 TPR repeat-containing 99.4 3.1E-11 6.6E-16 100.9 20.1 241 219-466 222-464 (478)
62 KOG4318 Bicoid mRNA stability 99.4 2E-11 4.3E-16 114.7 20.8 266 110-411 21-286 (1088)
63 PF12569 NARP1: NMDA receptor- 99.4 2.3E-09 5E-14 100.2 32.9 294 85-389 11-333 (517)
64 PF12569 NARP1: NMDA receptor- 99.4 4.5E-09 9.8E-14 98.3 33.6 128 329-459 197-333 (517)
65 KOG2047 mRNA splicing factor [ 99.4 8.1E-08 1.8E-12 88.0 39.9 133 78-214 102-277 (835)
66 KOG1840 Kinesin light chain [C 99.4 6.7E-10 1.4E-14 102.5 26.9 247 217-463 196-482 (508)
67 KOG1173 Anaphase-promoting com 99.4 4.7E-09 1E-13 94.5 31.0 286 148-443 243-534 (611)
68 KOG1156 N-terminal acetyltrans 99.4 9.4E-08 2E-12 87.7 38.4 389 53-462 19-470 (700)
69 PF13041 PPR_2: PPR repeat fam 99.4 2.9E-12 6.3E-17 79.4 6.5 50 394-443 1-50 (50)
70 KOG4318 Bicoid mRNA stability 99.4 3.2E-10 7E-15 106.8 22.7 276 135-448 11-288 (1088)
71 KOG2376 Signal recognition par 99.3 2E-07 4.4E-12 84.7 37.4 61 226-286 181-254 (652)
72 COG3063 PilF Tfp pilus assembl 99.3 5.8E-09 1.3E-13 83.4 24.5 201 259-463 38-239 (250)
73 PF13041 PPR_2: PPR repeat fam 99.3 7.7E-12 1.7E-16 77.5 6.7 49 324-372 1-49 (50)
74 KOG2047 mRNA splicing factor [ 99.3 3.3E-07 7.1E-12 84.2 37.2 375 73-458 164-613 (835)
75 KOG4162 Predicted calmodulin-b 99.3 4.9E-07 1.1E-11 84.8 38.7 381 78-465 323-788 (799)
76 KOG1156 N-terminal acetyltrans 99.3 2.2E-07 4.7E-12 85.4 35.4 370 80-463 9-437 (700)
77 KOG4340 Uncharacterized conser 99.3 5.3E-08 1.2E-12 80.9 28.3 294 78-386 10-335 (459)
78 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-08 3.1E-13 89.8 26.8 229 197-436 38-275 (296)
79 cd05804 StaR_like StaR_like; a 99.2 2.7E-07 6E-12 84.8 35.9 62 401-462 269-338 (355)
80 KOG1840 Kinesin light chain [C 99.2 2.1E-08 4.5E-13 92.8 27.6 130 294-423 328-477 (508)
81 PRK11189 lipoprotein NlpI; Pro 99.2 4.4E-08 9.5E-13 86.8 27.9 195 188-392 67-267 (296)
82 KOG1174 Anaphase-promoting com 99.2 1.4E-07 3.1E-12 81.9 29.4 303 111-425 191-500 (564)
83 cd05804 StaR_like StaR_like; a 99.2 3E-07 6.5E-12 84.6 34.4 306 114-424 6-335 (355)
84 KOG0548 Molecular co-chaperone 99.2 1.7E-07 3.6E-12 84.4 30.3 365 86-464 10-459 (539)
85 KOG3785 Uncharacterized conser 99.2 2.2E-07 4.8E-12 79.2 29.1 359 49-434 65-497 (557)
86 COG3063 PilF Tfp pilus assembl 99.2 4.7E-08 1E-12 78.3 23.7 192 87-284 44-235 (250)
87 PRK04841 transcriptional regul 99.2 6.5E-07 1.4E-11 93.2 39.4 344 122-465 382-765 (903)
88 KOG0624 dsRNA-activated protei 99.1 1.5E-06 3.2E-11 73.9 29.1 308 83-425 43-370 (504)
89 KOG4340 Uncharacterized conser 99.0 4.7E-07 1E-11 75.4 24.4 293 116-422 12-336 (459)
90 PF04733 Coatomer_E: Coatomer 99.0 3.9E-08 8.4E-13 85.8 18.5 82 341-424 182-264 (290)
91 PF04733 Coatomer_E: Coatomer 99.0 2.7E-08 5.8E-13 86.8 17.1 251 197-464 13-269 (290)
92 KOG0985 Vesicle coat protein c 99.0 6.1E-06 1.3E-10 79.9 32.9 307 67-423 973-1306(1666)
93 KOG1128 Uncharacterized conser 99.0 4.2E-07 9.1E-12 84.8 23.6 227 216-464 394-620 (777)
94 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.6E-12 86.0 19.4 226 228-464 293-531 (579)
95 KOG2376 Signal recognition par 98.9 3E-05 6.5E-10 71.0 33.9 359 79-465 13-492 (652)
96 PRK04841 transcriptional regul 98.9 1.8E-05 4E-10 82.5 37.9 337 87-425 383-760 (903)
97 KOG1125 TPR repeat-containing 98.9 2.5E-07 5.4E-12 84.0 20.6 217 89-314 296-521 (579)
98 KOG4162 Predicted calmodulin-b 98.9 3E-05 6.5E-10 73.3 34.6 352 110-467 319-756 (799)
99 KOG1070 rRNA processing protei 98.9 3.9E-06 8.5E-11 83.9 28.2 237 217-459 1455-1699(1710)
100 KOG0624 dsRNA-activated protei 98.9 3.3E-05 7.1E-10 66.0 29.6 281 80-393 74-373 (504)
101 PLN02789 farnesyltranstransfer 98.9 1.1E-05 2.5E-10 71.4 28.0 137 192-333 44-183 (320)
102 KOG3617 WD40 and TPR repeat-co 98.8 5.1E-06 1.1E-10 78.7 25.7 317 89-458 739-1107(1416)
103 KOG1070 rRNA processing protei 98.8 8.2E-06 1.8E-10 81.7 27.8 227 148-379 1457-1689(1710)
104 PLN02789 farnesyltranstransfer 98.8 1.6E-05 3.5E-10 70.5 27.3 148 150-303 38-188 (320)
105 PRK10370 formate-dependent nit 98.8 2.5E-06 5.4E-11 70.3 20.5 154 264-433 24-180 (198)
106 KOG3616 Selective LIM binding 98.8 1.1E-05 2.5E-10 75.6 26.2 109 263-384 739-847 (1636)
107 KOG0985 Vesicle coat protein c 98.8 0.00014 3E-09 71.0 33.3 178 257-458 1105-1306(1666)
108 PF12854 PPR_1: PPR repeat 98.8 1.4E-08 3.1E-13 56.3 4.3 32 426-457 2-33 (34)
109 TIGR03302 OM_YfiO outer membra 98.8 4.3E-06 9.3E-11 71.8 21.6 189 253-462 30-234 (235)
110 KOG3616 Selective LIM binding 98.7 6.4E-05 1.4E-09 70.8 29.3 199 80-315 734-932 (1636)
111 KOG1914 mRNA cleavage and poly 98.7 0.00018 3.9E-09 65.4 31.9 340 111-460 17-464 (656)
112 KOG1914 mRNA cleavage and poly 98.7 0.00019 4.1E-09 65.3 37.0 188 273-462 310-503 (656)
113 KOG3617 WD40 and TPR repeat-co 98.7 0.00013 2.9E-09 69.6 30.8 210 79-318 758-994 (1416)
114 COG5010 TadD Flp pilus assembl 98.7 9.4E-06 2E-10 66.9 20.6 163 113-282 66-228 (257)
115 TIGR03302 OM_YfiO outer membra 98.7 4.5E-06 9.7E-11 71.7 20.3 189 74-285 29-232 (235)
116 KOG3081 Vesicle coat complex C 98.7 3E-05 6.5E-10 64.0 23.1 149 264-423 116-269 (299)
117 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.2E-13 54.8 4.4 32 144-175 2-33 (34)
118 PRK15179 Vi polysaccharide bio 98.7 1.1E-05 2.4E-10 78.9 24.6 147 110-262 82-228 (694)
119 KOG1127 TPR repeat-containing 98.7 2.6E-05 5.5E-10 75.8 26.0 184 93-284 473-658 (1238)
120 KOG1128 Uncharacterized conser 98.7 1.3E-05 2.9E-10 75.2 23.3 211 155-388 404-614 (777)
121 PRK10370 formate-dependent nit 98.7 9.9E-06 2.2E-10 66.8 20.7 121 340-463 53-176 (198)
122 KOG2053 Mitochondrial inherita 98.7 0.00042 9.1E-09 67.0 39.0 222 55-286 23-256 (932)
123 COG5010 TadD Flp pilus assembl 98.7 1.6E-05 3.5E-10 65.5 20.9 157 224-385 70-226 (257)
124 KOG0548 Molecular co-chaperone 98.7 0.00029 6.3E-09 64.1 35.9 237 189-443 228-471 (539)
125 PRK14720 transcript cleavage f 98.7 5E-05 1.1E-09 75.4 27.6 59 222-283 118-176 (906)
126 KOG3081 Vesicle coat complex C 98.6 9.5E-05 2.1E-09 61.1 24.0 119 267-390 148-271 (299)
127 PRK15179 Vi polysaccharide bio 98.6 1.9E-05 4.2E-10 77.3 24.0 147 287-437 82-228 (694)
128 PRK15359 type III secretion sy 98.6 6.7E-06 1.5E-10 64.1 16.8 95 329-425 27-121 (144)
129 PRK15359 type III secretion sy 98.6 1.9E-06 4.2E-11 67.1 13.6 113 347-465 14-126 (144)
130 COG4783 Putative Zn-dependent 98.6 2.4E-05 5.2E-10 70.2 21.8 140 87-250 315-455 (484)
131 PRK14720 transcript cleavage f 98.5 0.00011 2.4E-09 73.0 26.5 219 148-407 30-268 (906)
132 TIGR02552 LcrH_SycD type III s 98.5 5.1E-06 1.1E-10 64.4 14.1 92 331-424 22-113 (135)
133 COG4783 Putative Zn-dependent 98.5 0.00033 7.1E-09 63.2 26.4 116 301-420 316-432 (484)
134 KOG3060 Uncharacterized conser 98.5 0.00026 5.7E-09 58.1 23.2 187 128-320 26-220 (289)
135 KOG3060 Uncharacterized conser 98.5 0.00043 9.4E-09 56.9 23.5 189 199-392 26-222 (289)
136 KOG1127 TPR repeat-containing 98.4 0.0011 2.5E-08 64.9 29.0 155 89-249 503-659 (1238)
137 TIGR02552 LcrH_SycD type III s 98.4 2.8E-05 6.1E-10 60.2 15.5 103 361-465 17-119 (135)
138 PF09976 TPR_21: Tetratricopep 98.3 6.8E-05 1.5E-09 58.7 16.1 126 328-457 14-144 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 7.5E-05 1.6E-09 67.7 17.6 122 330-458 173-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6E-11 47.9 4.6 33 398-430 2-34 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.7E-05 2.1E-09 67.0 16.4 125 258-389 171-296 (395)
142 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.5E-11 47.1 4.2 33 397-429 2-34 (34)
143 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.7E-05 1.7E-09 56.2 12.9 102 363-464 4-109 (119)
144 cd00189 TPR Tetratricopeptide 98.1 6.5E-05 1.4E-09 53.7 11.4 97 364-462 3-99 (100)
145 KOG2053 Mitochondrial inherita 98.1 0.011 2.4E-07 57.7 39.4 193 50-250 52-256 (932)
146 PF10037 MRP-S27: Mitochondria 98.1 5.9E-05 1.3E-09 68.7 12.9 121 288-408 63-185 (429)
147 TIGR00756 PPR pentatricopeptid 98.1 6.7E-06 1.5E-10 46.2 4.6 33 328-360 2-34 (35)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00037 8E-09 54.5 15.2 116 90-210 23-143 (145)
149 PF13812 PPR_3: Pentatricopept 98.1 8.8E-06 1.9E-10 45.4 4.3 32 328-359 3-34 (34)
150 PRK10866 outer membrane biogen 98.1 0.0039 8.5E-08 53.3 22.2 185 77-283 31-239 (243)
151 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3E-09 51.7 10.3 69 375-443 39-116 (120)
152 PF10037 MRP-S27: Mitochondria 98.0 0.00013 2.8E-09 66.5 13.0 123 252-374 62-186 (429)
153 PRK15363 pathogenicity island 98.0 0.00034 7.3E-09 53.8 12.4 91 332-424 41-131 (157)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00041 8.8E-09 52.2 12.9 98 80-177 4-104 (119)
155 PLN03088 SGT1, suppressor of 97.9 0.00031 6.8E-09 63.9 14.2 94 82-178 6-99 (356)
156 PF12895 Apc3: Anaphase-promot 97.9 2.8E-05 6.1E-10 54.3 5.8 80 374-456 2-83 (84)
157 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.4E-09 50.5 10.3 75 333-407 32-115 (120)
158 PLN03088 SGT1, suppressor of 97.9 0.00032 6.9E-09 63.9 13.8 103 332-438 8-110 (356)
159 PF14938 SNAP: Soluble NSF att 97.9 0.0018 3.8E-08 57.1 18.0 124 335-459 123-265 (282)
160 cd00189 TPR Tetratricopeptide 97.9 0.00044 9.5E-09 49.3 12.0 94 329-424 3-96 (100)
161 PF05843 Suf: Suppressor of fo 97.9 0.00049 1.1E-08 60.3 14.1 131 292-425 2-136 (280)
162 PF12895 Apc3: Anaphase-promot 97.9 3.2E-05 7E-10 53.9 5.5 82 91-174 2-83 (84)
163 PRK15363 pathogenicity island 97.9 0.00087 1.9E-08 51.6 13.2 97 80-179 37-133 (157)
164 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.7E-10 42.6 3.3 29 398-426 2-30 (31)
165 KOG2041 WD40 repeat protein [G 97.8 0.03 6.5E-07 53.2 29.1 124 75-209 689-820 (1189)
166 PRK02603 photosystem I assembl 97.8 0.001 2.3E-08 53.8 14.2 88 328-416 37-126 (172)
167 PRK10153 DNA-binding transcrip 97.8 0.0019 4.1E-08 61.6 17.9 140 322-465 333-487 (517)
168 KOG0550 Molecular chaperone (D 97.8 0.0084 1.8E-07 53.2 20.0 341 88-459 59-422 (486)
169 PF05843 Suf: Suppressor of fo 97.8 0.0011 2.3E-08 58.3 14.9 130 80-214 3-136 (280)
170 PRK02603 photosystem I assembl 97.8 0.0028 6E-08 51.3 16.3 93 291-384 35-129 (172)
171 PF06239 ECSIT: Evolutionarily 97.8 0.00098 2.1E-08 53.9 12.8 116 97-235 33-153 (228)
172 COG4700 Uncharacterized protei 97.8 0.01 2.2E-07 46.7 17.8 131 112-244 87-217 (251)
173 PF14938 SNAP: Soluble NSF att 97.8 0.0052 1.1E-07 54.2 19.0 113 193-320 102-225 (282)
174 PRK10866 outer membrane biogen 97.8 0.015 3.3E-07 49.7 21.0 58 401-458 180-239 (243)
175 PF14559 TPR_19: Tetratricopep 97.8 9.9E-05 2.2E-09 49.0 6.3 63 89-155 2-64 (68)
176 PF13432 TPR_16: Tetratricopep 97.8 0.00018 3.9E-09 47.3 7.4 62 402-464 3-64 (65)
177 KOG0553 TPR repeat-containing 97.7 0.00064 1.4E-08 57.5 11.7 91 299-392 89-180 (304)
178 KOG0553 TPR repeat-containing 97.7 0.00066 1.4E-08 57.5 11.7 102 87-194 90-191 (304)
179 PF13414 TPR_11: TPR repeat; P 97.7 0.00022 4.7E-09 47.5 7.4 67 395-462 2-69 (69)
180 PF01535 PPR: PPR repeat; Int 97.7 6.6E-05 1.4E-09 40.7 3.6 29 328-356 2-30 (31)
181 CHL00033 ycf3 photosystem I as 97.7 0.0014 3E-08 52.8 12.7 92 328-420 37-137 (168)
182 PF13525 YfiO: Outer membrane 97.6 0.012 2.6E-07 49.0 18.2 179 78-276 5-198 (203)
183 PRK10803 tol-pal system protei 97.6 0.002 4.2E-08 55.6 13.3 99 364-464 146-250 (263)
184 PF06239 ECSIT: Evolutionarily 97.6 0.0021 4.6E-08 52.0 12.3 71 340-410 66-152 (228)
185 PRK10153 DNA-binding transcrip 97.6 0.011 2.4E-07 56.5 19.4 63 219-284 419-481 (517)
186 COG4235 Cytochrome c biogenesi 97.6 0.0065 1.4E-07 51.9 15.5 99 325-425 155-256 (287)
187 CHL00033 ycf3 photosystem I as 97.6 0.003 6.5E-08 50.8 13.3 61 188-248 38-100 (168)
188 PF14559 TPR_19: Tetratricopep 97.6 0.00039 8.4E-09 46.1 6.7 60 373-435 3-62 (68)
189 PF12688 TPR_5: Tetratrico pep 97.5 0.016 3.5E-07 43.0 14.7 105 333-441 8-116 (120)
190 PF13432 TPR_16: Tetratricopep 97.5 0.00076 1.7E-08 44.2 7.0 57 367-424 3-59 (65)
191 COG4235 Cytochrome c biogenesi 97.4 0.015 3.2E-07 49.8 15.6 107 358-466 153-262 (287)
192 KOG2796 Uncharacterized conser 97.4 0.055 1.2E-06 45.2 18.2 132 116-249 179-315 (366)
193 PF13525 YfiO: Outer membrane 97.4 0.04 8.8E-07 45.8 17.8 81 365-451 114-198 (203)
194 KOG1130 Predicted G-alpha GTPa 97.4 0.0047 1E-07 54.7 12.3 136 328-463 197-347 (639)
195 KOG2796 Uncharacterized conser 97.4 0.013 2.7E-07 48.9 14.0 140 293-435 179-323 (366)
196 PF13414 TPR_11: TPR repeat; P 97.4 0.0011 2.3E-08 44.1 6.8 63 361-424 3-66 (69)
197 KOG1538 Uncharacterized conser 97.3 0.066 1.4E-06 50.6 19.6 89 361-460 747-846 (1081)
198 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.12 2.7E-06 46.7 28.8 144 98-248 29-189 (660)
199 PF04840 Vps16_C: Vps16, C-ter 97.3 0.11 2.5E-06 46.2 28.0 110 293-422 179-288 (319)
200 KOG0550 Molecular chaperone (D 97.3 0.13 2.8E-06 46.1 27.2 281 45-355 53-350 (486)
201 PF12688 TPR_5: Tetratrico pep 97.3 0.032 6.9E-07 41.5 14.2 55 123-177 10-66 (120)
202 PF03704 BTAD: Bacterial trans 97.2 0.0049 1.1E-07 48.3 10.3 72 363-435 64-140 (146)
203 KOG2041 WD40 repeat protein [G 97.2 0.23 4.9E-06 47.7 26.3 192 89-319 745-951 (1189)
204 PF13371 TPR_9: Tetratricopept 97.2 0.0022 4.7E-08 43.2 7.0 54 370-424 4-57 (73)
205 PF13281 DUF4071: Domain of un 97.2 0.14 3E-06 46.2 19.6 166 258-425 143-334 (374)
206 KOG1130 Predicted G-alpha GTPa 97.1 0.014 3.1E-07 51.8 12.8 268 86-355 25-344 (639)
207 PF12921 ATP13: Mitochondrial 97.1 0.01 2.2E-07 44.6 10.2 80 114-193 2-96 (126)
208 PF04840 Vps16_C: Vps16, C-ter 97.1 0.19 4.2E-06 44.8 28.4 106 328-453 179-284 (319)
209 PRK10803 tol-pal system protei 97.1 0.014 3.1E-07 50.4 12.3 86 90-177 155-245 (263)
210 COG4700 Uncharacterized protei 97.0 0.11 2.4E-06 41.1 18.5 65 184-248 88-152 (251)
211 PF13371 TPR_9: Tetratricopept 97.0 0.0066 1.4E-07 40.8 7.9 60 404-464 3-62 (73)
212 PRK15331 chaperone protein Sic 96.9 0.018 4E-07 44.7 10.1 90 333-424 44-133 (165)
213 COG3898 Uncharacterized membra 96.9 0.31 6.8E-06 43.4 31.8 284 126-425 96-392 (531)
214 PF13424 TPR_12: Tetratricopep 96.9 0.0039 8.5E-08 42.6 5.9 65 397-461 6-76 (78)
215 KOG2280 Vacuolar assembly/sort 96.8 0.54 1.2E-05 45.6 29.7 338 73-453 427-792 (829)
216 PF03704 BTAD: Bacterial trans 96.8 0.0075 1.6E-07 47.2 8.0 72 116-188 64-139 (146)
217 PF12921 ATP13: Mitochondrial 96.8 0.032 6.9E-07 41.9 10.7 98 148-266 1-98 (126)
218 COG4105 ComL DNA uptake lipopr 96.8 0.27 5.8E-06 41.4 22.0 189 77-284 33-232 (254)
219 KOG1538 Uncharacterized conser 96.7 0.2 4.4E-06 47.5 17.3 55 291-354 747-801 (1081)
220 COG3898 Uncharacterized membra 96.7 0.4 8.7E-06 42.8 30.2 294 151-462 84-394 (531)
221 PF04184 ST7: ST7 protein; In 96.7 0.24 5.1E-06 45.8 16.9 109 361-469 259-384 (539)
222 PRK15331 chaperone protein Sic 96.6 0.063 1.4E-06 41.8 11.4 92 83-177 42-133 (165)
223 COG3118 Thioredoxin domain-con 96.6 0.32 7E-06 41.8 16.2 144 124-271 144-287 (304)
224 COG3118 Thioredoxin domain-con 96.5 0.3 6.5E-06 41.9 15.8 152 158-314 143-295 (304)
225 PF09205 DUF1955: Domain of un 96.5 0.22 4.7E-06 37.0 14.7 62 330-392 90-151 (161)
226 PF09205 DUF1955: Domain of un 96.5 0.22 4.8E-06 37.0 14.5 61 400-461 90-150 (161)
227 PF13424 TPR_12: Tetratricopep 96.4 0.018 3.9E-07 39.3 6.8 61 363-423 7-73 (78)
228 KOG0543 FKBP-type peptidyl-pro 96.4 0.1 2.2E-06 46.7 12.8 100 362-464 258-359 (397)
229 PF10300 DUF3808: Protein of u 96.4 0.33 7.1E-06 46.2 17.0 121 339-462 246-378 (468)
230 PF04053 Coatomer_WDAD: Coatom 96.3 0.17 3.8E-06 47.3 14.5 160 85-281 268-427 (443)
231 KOG3941 Intermediate in Toll s 96.3 0.12 2.6E-06 43.8 11.7 104 112-235 65-173 (406)
232 COG1729 Uncharacterized protei 96.3 0.11 2.4E-06 44.1 11.6 102 363-465 144-249 (262)
233 PF10300 DUF3808: Protein of u 96.2 0.35 7.7E-06 46.0 16.6 180 95-284 174-375 (468)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.1 2.2E-06 47.8 12.2 64 325-390 74-141 (453)
235 KOG2114 Vacuolar assembly/sort 96.2 1.4 3.1E-05 43.5 22.3 184 75-282 331-516 (933)
236 COG4105 ComL DNA uptake lipopr 96.2 0.66 1.4E-05 39.1 21.1 62 401-463 172-236 (254)
237 smart00299 CLH Clathrin heavy 96.2 0.44 9.4E-06 36.9 15.2 85 83-176 12-96 (140)
238 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.13 2.8E-06 47.2 11.9 64 77-142 74-140 (453)
239 KOG0543 FKBP-type peptidyl-pro 96.0 0.22 4.7E-06 44.7 12.9 139 263-424 215-354 (397)
240 PF04053 Coatomer_WDAD: Coatom 96.0 0.5 1.1E-05 44.4 16.0 155 230-421 271-427 (443)
241 KOG1258 mRNA processing protei 96.0 1.5 3.2E-05 41.8 30.2 338 92-451 59-420 (577)
242 KOG4555 TPR repeat-containing 96.0 0.23 5E-06 36.8 10.6 90 335-426 52-145 (175)
243 PF13512 TPR_18: Tetratricopep 96.0 0.25 5.5E-06 37.6 11.4 89 75-163 7-96 (142)
244 KOG2610 Uncharacterized conser 95.9 0.46 9.9E-06 41.5 13.7 153 267-423 114-274 (491)
245 COG0457 NrfG FOG: TPR repeat [ 95.9 0.92 2E-05 38.3 31.0 223 199-424 37-264 (291)
246 PF08631 SPO22: Meiosis protei 95.8 1.2 2.7E-05 39.1 26.7 163 293-458 86-273 (278)
247 PF13281 DUF4071: Domain of un 95.7 1.6 3.4E-05 39.7 25.2 102 75-176 138-253 (374)
248 COG1729 Uncharacterized protei 95.7 0.21 4.6E-06 42.4 10.9 86 199-284 155-243 (262)
249 KOG4555 TPR repeat-containing 95.7 0.6 1.3E-05 34.7 11.9 91 229-321 52-145 (175)
250 PF08631 SPO22: Meiosis protei 95.5 1.5 3.3E-05 38.5 25.4 125 88-214 3-150 (278)
251 PF07079 DUF1347: Protein of u 95.5 1.9 4.2E-05 39.5 40.2 116 338-457 391-521 (549)
252 COG3629 DnrI DNA-binding trans 95.5 0.21 4.6E-06 43.1 10.6 77 363-440 155-236 (280)
253 PF13428 TPR_14: Tetratricopep 95.5 0.035 7.5E-07 32.8 4.2 26 399-424 4-29 (44)
254 PF13176 TPR_7: Tetratricopept 95.5 0.05 1.1E-06 30.4 4.6 33 433-465 1-33 (36)
255 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.1 4.6E-05 39.2 32.5 135 326-463 397-534 (660)
256 PRK11906 transcriptional regul 95.4 0.94 2E-05 41.9 14.7 147 306-457 273-433 (458)
257 KOG1920 IkappaB kinase complex 95.4 4.1 8.9E-05 42.2 29.9 131 78-213 677-820 (1265)
258 KOG3941 Intermediate in Toll s 95.4 0.2 4.2E-06 42.6 9.4 33 309-341 141-173 (406)
259 smart00299 CLH Clathrin heavy 95.3 0.96 2.1E-05 34.9 15.6 40 298-338 14-53 (140)
260 PF13512 TPR_18: Tetratricopep 95.3 0.94 2E-05 34.6 13.9 75 334-408 18-94 (142)
261 PF07035 Mic1: Colon cancer-as 95.3 1.2 2.5E-05 35.3 15.8 134 134-284 14-148 (167)
262 PF04184 ST7: ST7 protein; In 95.3 1.3 2.8E-05 41.2 15.0 169 80-265 170-340 (539)
263 PF09613 HrpB1_HrpK: Bacterial 95.2 0.83 1.8E-05 35.6 11.8 117 327-450 8-128 (160)
264 PF07719 TPR_2: Tetratricopept 95.2 0.081 1.8E-06 28.9 4.9 32 432-463 2-33 (34)
265 PF13428 TPR_14: Tetratricopep 95.0 0.081 1.8E-06 31.2 4.8 38 363-401 3-40 (44)
266 COG4649 Uncharacterized protei 95.0 1.4 3E-05 34.8 16.3 52 197-248 144-195 (221)
267 PF00515 TPR_1: Tetratricopept 94.9 0.1 2.2E-06 28.5 4.7 32 432-463 2-33 (34)
268 KOG1941 Acetylcholine receptor 94.8 1.9 4.2E-05 38.3 14.2 227 196-422 17-272 (518)
269 KOG1941 Acetylcholine receptor 94.8 1.7 3.6E-05 38.7 13.7 229 89-317 17-272 (518)
270 KOG2114 Vacuolar assembly/sort 94.6 1.3 2.8E-05 43.8 13.9 141 228-387 376-516 (933)
271 KOG2280 Vacuolar assembly/sort 94.5 5.2 0.00011 39.3 30.0 301 142-458 425-771 (829)
272 KOG1920 IkappaB kinase complex 94.5 7 0.00015 40.7 23.8 133 263-423 915-1053(1265)
273 PF09613 HrpB1_HrpK: Bacterial 94.4 1.9 4E-05 33.8 12.5 19 159-177 54-72 (160)
274 PF02259 FAT: FAT domain; Int 94.4 4.1 8.8E-05 37.3 21.2 53 192-248 5-57 (352)
275 KOG2066 Vacuolar assembly/sort 94.2 6.3 0.00014 39.0 25.8 105 82-197 360-467 (846)
276 PF13170 DUF4003: Protein of u 94.2 3.8 8.2E-05 36.3 20.2 132 273-406 79-227 (297)
277 PF07079 DUF1347: Protein of u 94.0 5.1 0.00011 37.0 35.2 138 89-232 17-179 (549)
278 PRK11906 transcriptional regul 93.8 1.8 3.9E-05 40.1 12.7 79 130-212 320-399 (458)
279 COG3629 DnrI DNA-binding trans 93.6 0.94 2E-05 39.2 10.0 84 113-197 152-239 (280)
280 KOG2610 Uncharacterized conser 93.6 4.8 0.0001 35.5 19.5 116 233-351 116-234 (491)
281 KOG1585 Protein required for f 93.6 3.8 8.3E-05 34.4 17.1 55 364-419 193-250 (308)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 93.5 0.87 1.9E-05 31.8 7.6 61 377-438 23-83 (103)
283 KOG1550 Extracellular protein 93.5 8.4 0.00018 37.8 24.1 275 165-462 228-540 (552)
284 PF13431 TPR_17: Tetratricopep 93.3 0.12 2.6E-06 28.4 2.8 21 395-415 12-32 (34)
285 PF13170 DUF4003: Protein of u 93.3 5.6 0.00012 35.2 21.0 130 201-332 78-223 (297)
286 PF13181 TPR_8: Tetratricopept 93.1 0.38 8.2E-06 26.1 4.8 31 432-462 2-32 (34)
287 TIGR02561 HrpB1_HrpK type III 93.1 3.2 6.9E-05 31.9 11.0 53 337-391 21-74 (153)
288 PF13929 mRNA_stabil: mRNA sta 92.9 5.8 0.00013 34.4 16.3 63 146-208 199-261 (292)
289 KOG1585 Protein required for f 92.9 5 0.00011 33.7 18.4 206 221-454 32-250 (308)
290 PF13176 TPR_7: Tetratricopept 92.9 0.29 6.4E-06 27.2 4.1 26 398-423 1-26 (36)
291 COG2976 Uncharacterized protei 92.7 4.6 0.0001 32.7 13.0 94 367-462 95-190 (207)
292 PF02284 COX5A: Cytochrome c o 92.7 0.8 1.7E-05 32.3 6.6 46 379-424 28-73 (108)
293 PF10602 RPN7: 26S proteasome 92.5 3.1 6.7E-05 33.6 11.1 61 328-388 38-100 (177)
294 PF13431 TPR_17: Tetratricopep 92.3 0.15 3.2E-06 28.0 2.3 24 111-134 10-33 (34)
295 PF10602 RPN7: 26S proteasome 92.2 5 0.00011 32.5 12.0 60 258-317 38-99 (177)
296 PF04097 Nic96: Nup93/Nic96; 92.2 14 0.0003 36.9 23.5 355 77-457 110-531 (613)
297 PF13174 TPR_6: Tetratricopept 92.1 0.38 8.2E-06 25.8 3.9 28 436-463 5-32 (33)
298 KOG4570 Uncharacterized conser 91.8 3 6.6E-05 36.3 10.4 105 214-320 58-164 (418)
299 PF02284 COX5A: Cytochrome c o 91.8 1.4 3E-05 31.2 7.0 61 131-193 27-87 (108)
300 COG4649 Uncharacterized protei 91.6 5.7 0.00012 31.4 15.6 132 79-213 60-195 (221)
301 COG4455 ImpE Protein of avirul 91.1 2.1 4.5E-05 35.2 8.4 76 82-159 5-82 (273)
302 KOG1550 Extracellular protein 91.1 17 0.00036 35.8 24.7 180 94-286 228-427 (552)
303 PF00515 TPR_1: Tetratricopept 90.9 0.69 1.5E-05 25.1 4.2 27 398-424 3-29 (34)
304 KOG4570 Uncharacterized conser 90.9 1.5 3.2E-05 38.1 7.7 47 165-212 116-162 (418)
305 PF02259 FAT: FAT domain; Int 90.8 13 0.00028 34.0 24.5 65 255-319 145-212 (352)
306 COG4785 NlpI Lipoprotein NlpI, 90.7 8.5 0.00018 31.8 14.6 180 91-284 78-265 (297)
307 PF07035 Mic1: Colon cancer-as 90.7 7.3 0.00016 30.9 15.7 130 314-459 17-148 (167)
308 KOG0276 Vesicle coat complex C 90.5 14 0.0003 35.7 14.1 46 125-176 648-693 (794)
309 KOG0276 Vesicle coat complex C 90.5 3.7 8.1E-05 39.2 10.5 131 259-422 617-747 (794)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 5 0.00011 28.2 9.3 63 129-193 22-84 (103)
311 COG4455 ImpE Protein of avirul 90.1 3 6.5E-05 34.3 8.4 131 328-465 3-139 (273)
312 PF07719 TPR_2: Tetratricopept 89.8 0.97 2.1E-05 24.4 4.2 27 398-424 3-29 (34)
313 PF13374 TPR_10: Tetratricopep 89.5 1.3 2.8E-05 25.3 4.8 29 432-460 3-31 (42)
314 COG3947 Response regulator con 89.5 13 0.00029 32.2 15.5 40 131-172 150-189 (361)
315 COG0457 NrfG FOG: TPR repeat [ 88.9 12 0.00027 31.1 33.0 202 186-391 60-266 (291)
316 TIGR02561 HrpB1_HrpK type III 88.6 9.6 0.00021 29.4 11.7 59 83-143 15-73 (153)
317 PF07163 Pex26: Pex26 protein; 88.5 15 0.00033 31.7 15.7 130 41-172 35-181 (309)
318 KOG4648 Uncharacterized conser 88.5 1.9 4.1E-05 38.0 6.7 95 333-432 104-199 (536)
319 PF13374 TPR_10: Tetratricopep 88.4 1.4 3.1E-05 25.1 4.4 28 397-424 3-30 (42)
320 PF11207 DUF2989: Protein of u 87.9 14 0.0003 30.3 12.8 82 122-205 115-198 (203)
321 KOG4234 TPR repeat-containing 87.6 12 0.00026 30.6 10.0 95 334-432 103-202 (271)
322 PF11207 DUF2989: Protein of u 87.5 12 0.00027 30.6 10.4 74 377-451 122-198 (203)
323 KOG1464 COP9 signalosome, subu 87.4 18 0.00038 31.1 15.4 174 215-388 21-218 (440)
324 KOG4077 Cytochrome c oxidase, 87.1 6.1 0.00013 29.3 7.6 46 380-425 68-113 (149)
325 PF13929 mRNA_stabil: mRNA sta 86.8 21 0.00044 31.2 18.4 116 165-280 144-262 (292)
326 KOG0890 Protein kinase of the 86.8 66 0.0014 37.0 29.1 360 89-469 1394-1793(2382)
327 PF00637 Clathrin: Region in C 86.7 0.15 3.2E-06 39.7 -0.7 86 331-423 12-97 (143)
328 KOG2396 HAT (Half-A-TPR) repea 86.5 29 0.00064 32.7 32.4 99 358-459 456-558 (568)
329 KOG4648 Uncharacterized conser 85.5 5.7 0.00012 35.2 7.9 92 299-393 105-197 (536)
330 PRK09687 putative lyase; Provi 84.6 28 0.0006 30.7 30.2 234 183-442 35-278 (280)
331 COG2909 MalT ATP-dependent tra 84.6 51 0.0011 33.7 27.1 270 82-351 364-684 (894)
332 KOG0292 Vesicle coat complex C 84.5 51 0.0011 33.7 22.4 94 372-465 1002-1118(1202)
333 TIGR03504 FimV_Cterm FimV C-te 84.3 1.6 3.4E-05 25.6 2.9 22 437-458 5-26 (44)
334 KOG4234 TPR repeat-containing 83.9 22 0.00048 29.1 9.9 91 301-392 105-199 (271)
335 smart00028 TPR Tetratricopepti 83.8 1.9 4.2E-05 22.2 3.2 28 434-461 4-31 (34)
336 PF13174 TPR_6: Tetratricopept 83.6 2.2 4.8E-05 22.6 3.4 25 401-425 5-29 (33)
337 PF06552 TOM20_plant: Plant sp 83.6 14 0.00031 29.6 8.8 32 94-127 51-82 (186)
338 PF06552 TOM20_plant: Plant sp 83.5 17 0.00037 29.2 9.2 26 414-441 98-123 (186)
339 PF14853 Fis1_TPR_C: Fis1 C-te 83.5 4.1 8.8E-05 25.1 4.7 33 403-437 8-40 (53)
340 PF07721 TPR_4: Tetratricopept 83.0 2.1 4.5E-05 21.6 2.8 18 437-454 7-24 (26)
341 COG2909 MalT ATP-dependent tra 82.8 60 0.0013 33.2 27.5 226 196-421 426-684 (894)
342 PF13181 TPR_8: Tetratricopept 82.3 4.7 0.0001 21.6 4.4 27 398-424 3-29 (34)
343 KOG1258 mRNA processing protei 82.0 52 0.0011 31.9 34.5 356 76-445 77-489 (577)
344 PRK15180 Vi polysaccharide bio 81.9 46 0.001 31.3 26.8 131 79-214 290-420 (831)
345 TIGR03504 FimV_Cterm FimV C-te 81.5 4 8.7E-05 23.9 3.9 23 402-424 5-27 (44)
346 PF00637 Clathrin: Region in C 81.5 0.48 1E-05 36.8 0.1 128 297-446 13-140 (143)
347 PF04097 Nic96: Nup93/Nic96; 81.3 62 0.0014 32.4 18.8 42 155-198 117-158 (613)
348 KOG0890 Protein kinase of the 81.1 1.1E+02 0.0025 35.3 26.1 319 119-463 1388-1734(2382)
349 PF13762 MNE1: Mitochondrial s 80.6 24 0.00053 27.2 11.5 47 186-232 80-127 (145)
350 PF11846 DUF3366: Domain of un 80.4 11 0.00025 30.9 7.9 35 428-462 141-175 (193)
351 PF07163 Pex26: Pex26 protein; 80.1 39 0.00085 29.3 13.4 87 263-349 90-181 (309)
352 KOG4077 Cytochrome c oxidase, 79.9 15 0.00032 27.4 7.1 59 132-192 67-125 (149)
353 PF07575 Nucleopor_Nup85: Nup8 79.6 68 0.0015 31.8 17.9 27 79-105 149-175 (566)
354 PF12862 Apc5: Anaphase-promot 79.5 17 0.00037 25.6 7.5 21 441-461 51-71 (94)
355 COG5159 RPN6 26S proteasome re 79.4 42 0.0009 29.2 11.8 24 436-459 130-153 (421)
356 PF10579 Rapsyn_N: Rapsyn N-te 79.3 17 0.00036 24.6 6.8 50 408-457 18-69 (80)
357 KOG1464 COP9 signalosome, subu 79.2 41 0.00088 29.0 16.9 264 90-363 39-339 (440)
358 PF08424 NRDE-2: NRDE-2, neces 78.8 50 0.0011 29.8 19.0 21 442-462 165-185 (321)
359 PF08424 NRDE-2: NRDE-2, neces 77.4 56 0.0012 29.6 15.0 80 94-176 47-129 (321)
360 PF04910 Tcf25: Transcriptiona 77.2 60 0.0013 29.9 18.0 56 368-423 110-166 (360)
361 KOG3364 Membrane protein invol 76.7 31 0.00066 26.3 8.7 67 358-424 29-99 (149)
362 COG4785 NlpI Lipoprotein NlpI, 76.6 43 0.00094 27.9 19.9 63 220-285 99-162 (297)
363 KOG2297 Predicted translation 74.9 59 0.0013 28.7 19.7 17 398-414 323-339 (412)
364 PF14689 SPOB_a: Sensor_kinase 74.5 9.7 0.00021 24.4 4.6 26 434-459 26-51 (62)
365 PF11848 DUF3368: Domain of un 74.0 16 0.00035 21.8 5.2 33 407-439 13-45 (48)
366 KOG4642 Chaperone-dependent E3 73.8 55 0.0012 27.8 10.7 118 301-422 20-143 (284)
367 PRK11619 lytic murein transgly 73.4 1.1E+02 0.0023 31.0 34.1 23 438-460 414-436 (644)
368 PRK11619 lytic murein transgly 73.2 1.1E+02 0.0024 30.9 35.6 58 294-352 315-372 (644)
369 PRK09687 putative lyase; Provi 72.6 68 0.0015 28.3 31.1 186 148-354 67-262 (280)
370 PF04762 IKI3: IKI3 family; I 72.5 78 0.0017 33.6 12.8 135 76-214 691-843 (928)
371 cd00280 TRFH Telomeric Repeat 71.9 37 0.00079 27.4 7.9 48 342-389 85-139 (200)
372 COG2976 Uncharacterized protei 71.5 55 0.0012 26.8 15.1 128 115-250 55-189 (207)
373 KOG4507 Uncharacterized conser 70.7 9.7 0.00021 36.5 5.3 92 373-465 619-710 (886)
374 PF14689 SPOB_a: Sensor_kinase 68.8 16 0.00034 23.4 4.6 45 95-142 7-51 (62)
375 KOG2034 Vacuolar sorting prote 68.3 1.5E+02 0.0033 30.5 28.6 49 86-141 366-416 (911)
376 PF11846 DUF3366: Domain of un 68.1 33 0.00071 28.2 7.7 31 253-283 141-171 (193)
377 PF13762 MNE1: Mitochondrial s 66.9 58 0.0012 25.2 10.8 80 294-373 42-127 (145)
378 PF13934 ELYS: Nuclear pore co 66.8 65 0.0014 27.3 9.2 108 76-196 74-183 (226)
379 PRK10941 hypothetical protein; 66.4 91 0.002 27.3 10.5 78 152-231 184-262 (269)
380 PF09986 DUF2225: Uncharacteri 65.9 80 0.0017 26.5 10.0 24 439-462 173-196 (214)
381 PF11817 Foie-gras_1: Foie gra 65.6 38 0.00083 29.2 7.8 61 115-175 179-244 (247)
382 PF11838 ERAP1_C: ERAP1-like C 65.0 1.1E+02 0.0023 27.6 18.6 80 273-355 147-230 (324)
383 PF10579 Rapsyn_N: Rapsyn N-te 64.9 29 0.00063 23.5 5.2 45 339-383 19-65 (80)
384 COG0735 Fur Fe2+/Zn2+ uptake r 64.9 47 0.001 25.8 7.4 60 315-375 10-69 (145)
385 COG3947 Response regulator con 64.6 1E+02 0.0022 27.2 17.4 41 202-244 150-190 (361)
386 KOG2297 Predicted translation 64.4 1E+02 0.0022 27.3 16.5 21 326-346 321-341 (412)
387 TIGR02508 type_III_yscG type I 64.1 51 0.0011 23.6 8.9 14 160-173 50-63 (115)
388 COG1747 Uncharacterized N-term 64.1 1.4E+02 0.003 28.7 26.0 179 182-369 63-247 (711)
389 PRK15180 Vi polysaccharide bio 63.8 1.4E+02 0.0029 28.4 27.0 99 76-177 321-419 (831)
390 PRK10564 maltose regulon perip 63.8 21 0.00046 31.3 5.7 44 180-223 251-295 (303)
391 TIGR02508 type_III_yscG type I 62.9 54 0.0012 23.5 9.1 50 230-286 49-98 (115)
392 KOG0376 Serine-threonine phosp 62.8 27 0.00058 32.8 6.4 108 83-196 9-116 (476)
393 KOG0686 COP9 signalosome, subu 62.6 1.3E+02 0.0029 27.9 15.0 64 221-284 151-215 (466)
394 PRK10941 hypothetical protein; 62.1 1.1E+02 0.0024 26.8 11.0 58 225-284 186-243 (269)
395 PF10366 Vps39_1: Vacuolar sor 61.6 56 0.0012 23.8 6.8 27 398-424 41-67 (108)
396 COG1747 Uncharacterized N-term 61.5 1.6E+02 0.0034 28.4 25.8 181 111-300 63-248 (711)
397 KOG2063 Vacuolar assembly/sort 61.1 2.2E+02 0.0047 29.9 24.4 187 258-444 506-745 (877)
398 PF11848 DUF3368: Domain of un 61.1 33 0.00072 20.5 5.2 30 373-402 14-43 (48)
399 KOG0991 Replication factor C, 60.0 1.1E+02 0.0023 26.1 13.3 92 266-360 169-272 (333)
400 PHA02875 ankyrin repeat protei 59.9 1.2E+02 0.0027 28.4 10.9 209 194-432 8-231 (413)
401 PF12862 Apc5: Anaphase-promot 59.5 43 0.00094 23.5 5.9 54 88-142 8-69 (94)
402 COG5108 RPO41 Mitochondrial DN 59.4 58 0.0013 32.1 8.1 75 331-408 33-115 (1117)
403 KOG1308 Hsp70-interacting prot 59.3 17 0.00037 32.4 4.4 94 338-433 126-219 (377)
404 KOG2908 26S proteasome regulat 59.1 1.4E+02 0.003 27.0 10.9 59 331-389 80-143 (380)
405 cd00280 TRFH Telomeric Repeat 59.0 97 0.0021 25.1 11.5 21 157-177 119-139 (200)
406 COG0735 Fur Fe2+/Zn2+ uptake r 58.7 58 0.0012 25.3 6.9 50 348-398 8-57 (145)
407 COG5108 RPO41 Mitochondrial DN 57.6 73 0.0016 31.5 8.4 94 80-176 30-130 (1117)
408 KOG0686 COP9 signalosome, subu 57.2 1.6E+02 0.0036 27.3 14.4 62 116-177 152-215 (466)
409 KOG2659 LisH motif-containing 56.7 1.2E+02 0.0026 25.6 9.7 100 322-423 22-130 (228)
410 KOG2471 TPR repeat-containing 56.7 1.9E+02 0.004 27.7 13.5 41 403-444 342-382 (696)
411 KOG4507 Uncharacterized conser 56.5 59 0.0013 31.6 7.6 85 339-424 620-704 (886)
412 KOG4567 GTPase-activating prot 56.5 87 0.0019 27.7 8.0 70 346-420 263-342 (370)
413 cd08819 CARD_MDA5_2 Caspase ac 56.4 65 0.0014 22.3 7.6 35 373-412 48-82 (88)
414 PF10345 Cohesin_load: Cohesin 56.2 2.3E+02 0.0049 28.6 38.0 188 94-282 37-251 (608)
415 PRK10564 maltose regulon perip 55.9 27 0.00059 30.7 5.1 30 399-428 260-289 (303)
416 PF04762 IKI3: IKI3 family; I 55.6 2.6E+02 0.0057 29.8 12.9 29 257-285 813-843 (928)
417 KOG1308 Hsp70-interacting prot 55.3 9.1 0.0002 34.0 2.2 93 88-184 124-216 (377)
418 PF02184 HAT: HAT (Half-A-TPR) 55.0 33 0.00071 18.5 3.4 25 411-437 2-26 (32)
419 PF04190 DUF410: Protein of un 54.6 1.5E+02 0.0032 25.9 14.3 22 439-460 149-170 (260)
420 COG5187 RPN7 26S proteasome re 54.1 1.5E+02 0.0034 26.0 15.5 219 9-234 12-241 (412)
421 cd08819 CARD_MDA5_2 Caspase ac 53.4 74 0.0016 22.1 7.5 38 126-168 48-85 (88)
422 PF14561 TPR_20: Tetratricopep 53.3 76 0.0016 22.2 8.2 33 111-143 19-51 (90)
423 PF02847 MA3: MA3 domain; Int 52.9 80 0.0017 23.0 6.7 22 331-352 7-28 (113)
424 PF14669 Asp_Glu_race_2: Putat 52.6 1.3E+02 0.0028 24.7 14.6 25 296-320 137-161 (233)
425 PF10366 Vps39_1: Vacuolar sor 52.4 90 0.0019 22.8 6.9 26 259-284 42-67 (108)
426 KOG2659 LisH motif-containing 52.3 1.4E+02 0.0031 25.1 9.5 64 111-176 23-91 (228)
427 PF11817 Foie-gras_1: Foie gra 52.2 94 0.002 26.8 7.9 59 400-458 182-245 (247)
428 KOG4521 Nuclear pore complex, 52.2 3.4E+02 0.0073 29.4 14.5 124 291-420 983-1126(1480)
429 KOG0376 Serine-threonine phosp 51.3 37 0.00081 31.9 5.4 101 336-441 14-115 (476)
430 PF09670 Cas_Cas02710: CRISPR- 51.2 2.1E+02 0.0045 26.7 12.9 56 299-355 139-198 (379)
431 KOG4567 GTPase-activating prot 48.7 1.3E+02 0.0029 26.6 7.9 71 311-386 263-343 (370)
432 smart00386 HAT HAT (Half-A-TPR 48.3 38 0.00083 17.3 3.9 28 410-438 1-28 (33)
433 PRK11639 zinc uptake transcrip 47.4 1.1E+02 0.0023 24.6 7.0 63 350-413 15-77 (169)
434 PF11768 DUF3312: Protein of u 47.3 2.8E+02 0.0061 27.0 11.5 24 153-176 412-435 (545)
435 PF09454 Vps23_core: Vps23 cor 45.8 54 0.0012 21.3 4.1 49 183-232 6-54 (65)
436 PF11663 Toxin_YhaV: Toxin wit 45.4 24 0.00051 26.7 2.7 30 339-370 108-137 (140)
437 KOG4642 Chaperone-dependent E3 45.4 2E+02 0.0043 24.7 10.7 100 90-194 22-126 (284)
438 PF00772 DnaB: DnaB-like helic 45.2 1.1E+02 0.0023 21.8 6.2 59 49-107 11-69 (103)
439 PRK11639 zinc uptake transcrip 45.1 1.4E+02 0.0031 23.9 7.4 61 317-378 17-77 (169)
440 PF11663 Toxin_YhaV: Toxin wit 44.7 26 0.00057 26.5 2.8 28 199-228 109-136 (140)
441 PF09454 Vps23_core: Vps23 cor 44.4 84 0.0018 20.4 4.8 48 325-373 7-54 (65)
442 PF09477 Type_III_YscG: Bacter 44.3 1.2E+02 0.0027 22.0 9.0 79 200-286 21-99 (116)
443 COG4976 Predicted methyltransf 44.2 42 0.00092 28.2 4.2 51 373-424 7-57 (287)
444 PF03745 DUF309: Domain of unk 44.1 85 0.0018 20.1 5.6 10 410-419 13-22 (62)
445 COG0790 FOG: TPR repeat, SEL1 44.0 2.3E+02 0.0049 25.0 22.9 82 198-286 54-143 (292)
446 PF09670 Cas_Cas02710: CRISPR- 43.9 2.7E+02 0.0059 25.9 12.4 56 85-142 138-197 (379)
447 KOG0545 Aryl-hydrocarbon recep 43.8 2.1E+02 0.0046 24.6 11.1 21 333-353 185-205 (329)
448 PRK09462 fur ferric uptake reg 43.2 1.5E+02 0.0033 23.0 7.2 62 350-412 6-68 (148)
449 PF07575 Nucleopor_Nup85: Nup8 43.0 74 0.0016 31.6 6.6 24 270-293 509-532 (566)
450 KOG4521 Nuclear pore complex, 42.7 4.8E+02 0.01 28.4 16.0 23 437-459 1376-1398(1480)
451 KOG0687 26S proteasome regulat 42.5 2.6E+02 0.0056 25.2 14.5 97 150-248 105-209 (393)
452 smart00777 Mad3_BUB1_I Mad3/BU 41.9 1.5E+02 0.0033 22.4 6.9 41 204-244 82-123 (125)
453 PHA02537 M terminase endonucle 41.9 1.1E+02 0.0024 26.0 6.4 25 443-467 190-214 (230)
454 KOG3807 Predicted membrane pro 41.8 2.6E+02 0.0057 25.1 12.2 171 41-225 181-351 (556)
455 smart00804 TAP_C C-terminal do 41.5 26 0.00055 22.6 2.1 24 91-114 38-61 (63)
456 PF10475 DUF2450: Protein of u 41.4 2.6E+02 0.0056 24.9 10.4 25 358-382 194-218 (291)
457 PRK09462 fur ferric uptake reg 41.4 1.7E+02 0.0036 22.8 7.3 61 316-377 7-68 (148)
458 PRK06645 DNA polymerase III su 41.2 3.5E+02 0.0077 26.4 11.3 29 190-219 263-291 (507)
459 cd07153 Fur_like Ferric uptake 41.2 70 0.0015 23.4 4.9 47 366-412 5-51 (116)
460 KOG1839 Uncharacterized protei 40.5 3.2E+02 0.007 29.8 10.6 27 111-137 970-996 (1236)
461 PF14669 Asp_Glu_race_2: Putat 40.5 2.1E+02 0.0045 23.6 14.4 184 285-471 2-218 (233)
462 PF02847 MA3: MA3 domain; Int 40.4 1.4E+02 0.0031 21.6 6.5 21 262-282 8-28 (113)
463 KOG0687 26S proteasome regulat 40.3 2.8E+02 0.0061 25.0 15.9 97 257-355 105-210 (393)
464 PF14853 Fis1_TPR_C: Fis1 C-te 40.1 89 0.0019 19.2 6.1 24 440-463 10-33 (53)
465 PF07064 RIC1: RIC1; InterPro 39.5 2.6E+02 0.0056 24.4 15.3 59 226-284 185-248 (258)
466 PF14929 TAF1_subA: TAF RNA Po 39.2 3.9E+02 0.0085 26.4 15.7 172 94-281 300-480 (547)
467 KOG2066 Vacuolar assembly/sort 39.1 4.5E+02 0.0097 27.0 23.0 102 121-232 363-467 (846)
468 PF04090 RNA_pol_I_TF: RNA pol 38.3 2.3E+02 0.005 23.5 7.7 27 364-390 44-70 (199)
469 COG5116 RPN2 26S proteasome re 37.9 3.9E+02 0.0085 26.3 9.8 30 217-246 56-85 (926)
470 PF11123 DNA_Packaging_2: DNA 37.8 1.2E+02 0.0026 20.1 5.8 37 90-128 9-45 (82)
471 cd07153 Fur_like Ferric uptake 37.5 88 0.0019 22.9 4.9 47 332-378 6-52 (116)
472 KOG2168 Cullins [Cell cycle co 37.4 4.9E+02 0.011 27.0 15.0 316 119-459 330-663 (835)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 37.3 1.8E+02 0.0039 21.9 9.7 44 414-457 81-125 (126)
474 PF01475 FUR: Ferric uptake re 37.2 65 0.0014 23.9 4.1 45 401-445 12-56 (120)
475 PF00244 14-3-3: 14-3-3 protei 37.1 2.7E+02 0.0058 23.9 11.3 58 261-318 6-64 (236)
476 KOG1586 Protein required for f 36.9 2.7E+02 0.0059 23.8 22.8 17 339-355 167-183 (288)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 36.8 1.8E+02 0.004 21.9 9.5 43 203-245 81-124 (126)
478 PF10255 Paf67: RNA polymerase 36.7 3.7E+02 0.008 25.3 14.0 61 187-247 124-191 (404)
479 PHA02875 ankyrin repeat protei 36.3 3.7E+02 0.008 25.2 14.9 216 85-326 6-230 (413)
480 PRK09857 putative transposase; 35.2 3.3E+02 0.0071 24.3 9.6 64 295-359 210-273 (292)
481 KOG0292 Vesicle coat complex C 35.0 3.8E+02 0.0082 28.0 9.6 131 122-284 651-781 (1202)
482 KOG0991 Replication factor C, 34.8 2.9E+02 0.0064 23.6 13.1 103 301-407 169-283 (333)
483 KOG2422 Uncharacterized conser 34.7 4.6E+02 0.01 25.9 18.4 77 334-410 350-430 (665)
484 KOG1839 Uncharacterized protei 34.5 6.2E+02 0.013 27.8 11.5 155 266-420 942-1123(1236)
485 PF08314 Sec39: Secretory path 34.3 3.1E+02 0.0066 28.4 9.6 30 291-320 596-625 (715)
486 KOG0551 Hsp90 co-chaperone CNS 34.3 2.6E+02 0.0057 25.3 7.6 87 299-387 89-179 (390)
487 PF14561 TPR_20: Tetratricopep 34.3 1.6E+02 0.0035 20.5 9.6 31 219-249 21-51 (90)
488 TIGR03362 VI_chp_7 type VI sec 34.0 2.6E+02 0.0057 25.0 7.9 58 368-425 220-279 (301)
489 PF01475 FUR: Ferric uptake re 33.9 79 0.0017 23.4 4.2 46 331-376 12-57 (120)
490 PRK14956 DNA polymerase III su 33.9 4.5E+02 0.0097 25.5 12.7 99 238-360 184-282 (484)
491 PF11838 ERAP1_C: ERAP1-like C 33.6 3.5E+02 0.0077 24.2 21.9 151 307-462 146-306 (324)
492 PF03745 DUF309: Domain of unk 33.5 1.3E+02 0.0029 19.2 5.8 16 268-283 11-26 (62)
493 KOG3364 Membrane protein invol 32.6 2.3E+02 0.005 21.8 9.7 69 323-392 29-102 (149)
494 PRK08691 DNA polymerase III su 32.3 5.7E+02 0.012 26.2 11.9 92 343-437 182-286 (709)
495 PF02607 B12-binding_2: B12 bi 32.2 92 0.002 20.8 3.9 34 409-442 14-47 (79)
496 PF00244 14-3-3: 14-3-3 protei 32.0 3.3E+02 0.0071 23.3 9.3 60 224-284 5-65 (236)
497 PF07064 RIC1: RIC1; InterPro 31.9 3.5E+02 0.0075 23.6 17.5 65 401-465 184-254 (258)
498 PF09868 DUF2095: Uncharacteri 31.7 2.1E+02 0.0046 21.0 5.5 44 190-234 66-109 (128)
499 KOG2422 Uncharacterized conser 31.6 5.2E+02 0.011 25.5 17.6 96 367-462 348-450 (665)
500 PHA03100 ankyrin repeat protei 31.5 3.8E+02 0.0082 25.8 9.5 212 155-395 38-277 (480)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-61 Score=477.04 Aligned_cols=416 Identities=20% Similarity=0.295 Sum_probs=384.6
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHh
Q 012111 46 EAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125 (471)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (471)
.....+.+.++...+.+.++++.... ......-.....+..+.+.|.+++|+++|+.|.. |+..+|+.++.+|+
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHH
Confidence 34444555567777777777664421 1111112223556777888899999999988863 89999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 205 (471)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 205 (471)
+.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 799999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 206 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. .++.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999763 46899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 012111 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364 (471)
Q Consensus 285 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 364 (471)
.|+.|+..+|+.+|.+|++.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 365 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (471)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCc
Q 012111 445 GMTEAAQNLENKMIAMKENSGKKL 468 (471)
Q Consensus 445 g~~~~A~~~~~~m~~~~~~~~~~~ 468 (471)
|++++|.+++++|++.+..++..+
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999998887544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-59 Score=466.48 Aligned_cols=389 Identities=18% Similarity=0.248 Sum_probs=372.2
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 76 LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155 (471)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (471)
.+...+..+|..+++.|+++.|.++|+.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 456678899999999999999999999999887 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHcc
Q 012111 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY--LGIECSAVTYNTIIDGYGKA 233 (471)
Q Consensus 156 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~ 233 (471)
|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999998 79999999999999999999999999999999986 67899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 012111 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313 (471)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 313 (471)
|++++|.++|+.|.+.+ +.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++
T Consensus 593 G~ldeA~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999998775 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHH
Q 012111 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----L-------------------GMTEAA 450 (471)
Q Consensus 394 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A 450 (471)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999866432 1 224679
Q ss_pred HHHHHHHHHhhhcCCCC
Q 012111 451 QNLENKMIAMKENSGKK 467 (471)
Q Consensus 451 ~~~~~~m~~~~~~~~~~ 467 (471)
..+|++|++.|..|+..
T Consensus 832 l~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 832 LMVYRETISAGTLPTME 848 (1060)
T ss_pred HHHHHHHHHCCCCCCHH
Confidence 99999999999888753
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-55 Score=435.20 Aligned_cols=399 Identities=18% Similarity=0.274 Sum_probs=257.8
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCC
Q 012111 50 DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ 129 (471)
Q Consensus 50 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (471)
.+.+.++..++++.++++.... ...++..++..++..+.+.++++.|.+++..+.+.+ +.|+..+|+.++..|++.|+
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~-~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCC
Confidence 3455556777777777654322 223566788899999999999999999999998876 78999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209 (471)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (471)
++.|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+ .|+.|+..+|+.++.+|++.|..+.+.+++.
T Consensus 174 ~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 174 LIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred HHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999997 47889999999999999999999999999987 5667766666555555555444444444444
Q ss_pred HHHHCCCCCCH-------------------------------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHH
Q 012111 210 EMSYLGIECSA-------------------------------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 258 (471)
Q Consensus 210 ~~~~~g~~~~~-------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (471)
.+.+.|+.+|. .+|+.++.+|++.|++++|.++|++|.+.+ +.||..|
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t 327 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFT 327 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHH
Confidence 44444444444 445555555555555555555555553332 4555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338 (471)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (471)
|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+ ||..+|+.||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555432 355556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 417 (471)
.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 666666666666666666666666666666666666666666666666653 4566666666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+|+
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 65544 34566666666666666666666666666666655554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-55 Score=433.09 Aligned_cols=375 Identities=16% Similarity=0.242 Sum_probs=306.9
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
..+...+..+.+.|++++|+++|++|...+++.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46778899999999999999999999987667899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 238 (471)
|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999974 79999999999999999999999999999999999999999888888777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012111 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 318 (471)
+.+++..+.+.+ +.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.
T Consensus 243 ~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 243 GQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777776554 67777777777777777777777777777764 3567777777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 012111 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398 (471)
Q Consensus 319 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 398 (471)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 77777777777777777777777777777777777777777777777777777777777777777777653 46667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhcCCCC
Q 012111 399 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM-KENSGKK 467 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~ 467 (471)
||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+. +..|+..
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 77777777777777777777777777777777777777777777777777777777777653 4444433
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.7e-53 Score=425.94 Aligned_cols=397 Identities=22% Similarity=0.258 Sum_probs=267.5
Q ss_pred HHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHH--------------
Q 012111 52 SKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTF-------------- 117 (471)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------- 117 (471)
.+.++...+...++++.. .+...+..++..+.+.|++++|+++|+.|...+ +.||..+|
T Consensus 132 ~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchh
Confidence 344444555555554432 244577788888899999999999999887664 56665554
Q ss_pred ---------------------HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012111 118 ---------------------TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176 (471)
Q Consensus 118 ---------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 176 (471)
+.++.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 556666666677777777777765 3566777777777777777777777777777
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCH
Q 012111 177 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 256 (471)
Q Consensus 177 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (471)
. .|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.
T Consensus 281 ~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~ 354 (857)
T PLN03077 281 E-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDA 354 (857)
T ss_pred H-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCe
Confidence 6 677788888888888888888888888888888888888888888888888888888888888887773 4677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (471)
.+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 77888888888888888888888888777777777777777777777777777777777777777777766666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 337 GKAGHIEKMEEYFKKMKHR------------------------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386 (471)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~------------------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 386 (471)
++.|++++|.++|++|.+. ++.||..||+.++.+|++.|+++.+.+++..
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 6666666666666555321 2344444444333333322222222222222
Q ss_pred HHhCCC------------------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 387 VENSDV------------------------------ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436 (471)
Q Consensus 387 ~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 436 (471)
+.+.|+ .+|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 222221 23455566666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-HhhhcCC
Q 012111 437 MIQAYNALGMTEAAQNLENKMI-AMKENSG 465 (471)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~ 465 (471)
++.+|.+.|++++|.++|++|. +.+..|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 6666666666666666666666 3444444
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-52 Score=421.45 Aligned_cols=359 Identities=20% Similarity=0.241 Sum_probs=282.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 82 LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161 (471)
Q Consensus 82 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (471)
..++..+.+.|+++.|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|+.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 344555666777777777777764 356677777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 012111 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241 (471)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (471)
.++++.+.+++..|.+ .|+.||..+|+.++.+|++.|+++.|.++|++|. .+|..+|+.+|.+|++.|++++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 200 IPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred ccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 7777777777777776 6777777777777777777788888888887775 3577778888888888888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 012111 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 321 (471)
+|++|.+.+ +.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|..
T Consensus 275 lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 351 (857)
T PLN03077 275 LFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351 (857)
T ss_pred HHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Confidence 888886654 77888888888888888888888888888888888888888888888888888888888888887753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 012111 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401 (471)
Q Consensus 322 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 401 (471)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.
T Consensus 352 --~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred --CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 577788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|.+.|+.++|..+|++|..
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888764 5777888888888888888888888888875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.9e-25 Score=228.99 Aligned_cols=369 Identities=12% Similarity=0.053 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+......+...|++++|.+.|+.+.+.. +.+..++..+...+.+.|++++|...++++...+. .+...+..++..+
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 577 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHH
Confidence 34444444555666666666666665543 44555566666666666666666666666655432 2445555566666
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 239 (471)
...|++++|..+++.+.. ..+.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|
T Consensus 578 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 578 LGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654 224455566666666666666666666666665543 33455566666666666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (471)
...|+++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|..+..
T Consensus 655 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 655 ITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666665542 3345556666666666666666666666665543 44555566666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 012111 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399 (471)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 399 (471)
.+ |+..++..+..++...|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+++.+..+. +..++
T Consensus 732 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 807 (899)
T TIGR02917 732 RA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVL 807 (899)
T ss_pred hC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 43 233455556666666666666666666666543 335556666666666666666666666666665543 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 400 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+.+...+...|+ .+|+.+++++.+. .+-+..++..+...+...|++++|.+.++++++.+|.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 666666666666 5566666666553 1223444555566666666666666666666666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.5e-25 Score=229.35 Aligned_cols=388 Identities=11% Similarity=0.023 Sum_probs=334.4
Q ss_pred HHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHH
Q 012111 53 KILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQ 132 (471)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (471)
..++...+...+...+... +.....+......+.+.|++++|+..|+.+...+ +.+...+..++..+...|++++
T Consensus 511 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHH
Confidence 3344555555555555432 2234556667777788999999999999998875 6677888999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212 (471)
Q Consensus 133 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 212 (471)
|..+++.+.+.. +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998764 4478899999999999999999999999998732 4567788899999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 012111 213 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 292 (471)
Q Consensus 213 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (471)
+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+...+ |+..
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 764 5568899999999999999999999999998764 5677788889999999999999999999998764 5557
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
++..+..++.+.|++++|...+..+.+... .+...+..+...|...|++++|..+|+++.+.. +.+..++..+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 788899999999999999999999988644 477889999999999999999999999999875 557889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 452 (471)
..|+ .+|..+++++.+..+. +..++..+...+...|++++|.++|+++.+.+. .+..++..+..++.+.|++++|.+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999 8899999999887655 677888899999999999999999999998753 388999999999999999999999
Q ss_pred HHHHHH
Q 012111 453 LENKMI 458 (471)
Q Consensus 453 ~~~~m~ 458 (471)
++++|+
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999986
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.6e-22 Score=184.57 Aligned_cols=299 Identities=14% Similarity=0.107 Sum_probs=143.8
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcC
Q 012111 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD---VYTYSILIKSCTKFH 199 (471)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~ 199 (471)
.+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+... +..++ ...+..+...+.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666666666665532 24455666666666666666666666666542 11111 123445555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKME 276 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 276 (471)
+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555555555432 234445555555555555555555555555443211111 111223333344444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012111 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (471)
..|+++.+.. +.+ ...+..+...+.+.|++++|.++++++...+
T Consensus 201 ~~~~~al~~~-p~~-----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 201 ALLKKALAAD-PQC-----------------------------------VRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHhHC-cCC-----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 4444443321 112 2233344444444455555555555444432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 436 (471)
Q Consensus 357 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 436 (471)
......++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 11112334445555555555555555555554442 23333445555555555555555555555543 355555555
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHHHhhhcC
Q 012111 437 MIQAYNA---LGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 437 l~~~~~~---~g~~~~A~~~~~~m~~~~~~~ 464 (471)
++..+.. .|+.+++..++++|++....+
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 5544432 335555555555555544433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-21 Score=182.47 Aligned_cols=265 Identities=14% Similarity=0.075 Sum_probs=192.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCH
Q 012111 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP--DIFTLNSMISAYGNSGNI 272 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 272 (471)
+...|+++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.....+ ....+..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555666666666665543 23445566666666666666666666666654321111 123456666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 012111 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV----VTYNIVIETFGKAGHIEKMEEY 348 (471)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~ 348 (471)
++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776542 445666777777777777777777777777665433221 2355677788899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428 (471)
Q Consensus 349 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 428 (471)
++++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 99998763 33466788899999999999999999999998755434567889999999999999999999999885 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 429 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 429 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
|+...+..++..+.+.|++++|..+++++++..|+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 777777888999999999999999999999887653
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.9e-20 Score=182.65 Aligned_cols=334 Identities=8% Similarity=-0.005 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+...+..+.+.|++++|+.+++.+.... +.+...+..++.+....|++++|...++.+.+.... +...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 45566777889999999999999999875 666778888888888999999999999999987543 677888899999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 239 (471)
...|++++|+..|++.... .+.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999873 24456778889999999999999999999887664 2334444443 347889999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHH
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK----MRSVMD 315 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~ 315 (471)
...++.+.+... .++...+..+..++...|++++|...++++.... +.+...+..+...+...|++++ |...++
T Consensus 197 ~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999877631 2334455566778899999999999999998765 5667888889999999999986 899999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 012111 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (471)
...+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++.+...++. +
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~ 351 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-T 351 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-c
Confidence 98886443 67788899999999999999999999999863 335667788889999999999999999999887544 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 396 TPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
...+..+..++...|+.++|+..|++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555677889999999999999998874
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.1e-19 Score=178.06 Aligned_cols=370 Identities=12% Similarity=0.011 Sum_probs=287.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 84 ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163 (471)
Q Consensus 84 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 163 (471)
.-..+.+.|++++|++.|+.+... .|+...|..+..+|.+.|++++|+..++..++.... +...|..+..+|...|
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcC
Confidence 344566789999999999999875 467788999999999999999999999999887433 6778888999999999
Q ss_pred CHHHHHHHHHHhhcCCCCC-------------------------------CCHHHHHHH---------------------
Q 012111 164 LLDEAFSTINDMKSVSDCK-------------------------------PDVYTYSIL--------------------- 191 (471)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~l--------------------- 191 (471)
++++|+.-|.......+.. |........
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 9999987665443211110 000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHH
Q 012111 192 ------IKSC------TKFHRFDLIEKILAEMSYLG-I-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 257 (471)
Q Consensus 192 ------l~~~------~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (471)
+... ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..|++..+.. +....
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHH
Confidence 0000 11257889999999998765 2 3345678888889999999999999999998763 33466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (471)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+...+.... +...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 88889999999999999999999998764 566788999999999999999999999999887433 5667888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH------HHHHHHHHHHhcCC
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP------FFNCIISAYGQAGD 411 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~ 411 (471)
+.|++++|+..|++..... +-+...++.+...+...|++++|...|++.....+..+.. .++..+..+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999998753 3457889999999999999999999999988765432221 12222233445699
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 412 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 412 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+++|.+++++..+.. +.+...+..+...+.+.|++++|.++++++.+....
T Consensus 524 ~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 524 FIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 999999999988753 224456888999999999999999999999887654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.2e-21 Score=170.85 Aligned_cols=372 Identities=14% Similarity=0.160 Sum_probs=297.6
Q ss_pred hHHHHHHHhhHHHHH----HHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHH
Q 012111 48 EKDLSKILRTEFAIK----NIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM 123 (471)
Q Consensus 48 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (471)
...+..+.+..+.++ ..+.+++ ..+-..+.++.....+...|+.+.|.+.|..+.+.+ |...-....+...
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 334445555555443 3333333 334456778888888899999999999999998864 3333444555566
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCH
Q 012111 124 LGKCKQPEQASLLFEVMLSDGLKPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRF 201 (471)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 201 (471)
+-..|+.++|...|.+.++. .|. ...|+.|...+-.+|+...|++.|++..+. .|+ ...|-.|...|...+.+
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcc
Confidence 66789999999999888876 333 467899999999999999999999998873 444 45688899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 202 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (471)
++|...+.+..... +.....+..+...|..+|..+-|+..|++..+.... -...|+.|..++-..|++.+|.+.|.+
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 99999998887653 345778888999999999999999999999886422 245799999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 012111 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360 (471)
Q Consensus 282 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 360 (471)
..... +......+.|..+|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.++ +.|+
T Consensus 346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 98764 556778899999999999999999999988875 333 45788899999999999999999999887 5776
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 012111 361 -SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMI 438 (471)
Q Consensus 361 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~ 438 (471)
...|+.+...|-..|+++.|.+.+.+.+..++. -...++.|...|...|++.+|+.-|++..+ ++||. ..|-.++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNll 497 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHH
Confidence 668999999999999999999999999988765 567889999999999999999999999987 56764 3444444
Q ss_pred HH
Q 012111 439 QA 440 (471)
Q Consensus 439 ~~ 440 (471)
.+
T Consensus 498 h~ 499 (966)
T KOG4626|consen 498 HC 499 (966)
T ss_pred HH
Confidence 43
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=4.9e-21 Score=171.01 Aligned_cols=372 Identities=14% Similarity=0.090 Sum_probs=309.4
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD-VYTALVS 157 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~ 157 (471)
+.+......+-..|++++|+..|+.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 455556666777899999999999998875 567788999999999999999999999888876 44443 3344556
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012111 158 AYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236 (471)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 236 (471)
.+...|++++|...|.+..+. .|. ...|+.|.-.+-..|+...|++.|++..+.. +--...|..|...|...+.+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHhhcccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcc
Confidence 666788999999988887762 343 4568888888888999999999999998763 22377899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 316 (471)
+.|...|.+..... +-....+..+...|...|+.|.|+..|++..+.. +.-...|+.|..++-..|++.+|.+.+..
T Consensus 269 d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 99999999887652 3446778888888999999999999999998764 44577899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 012111 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (471)
....... .....+.|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|...+++..+..+. -
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-f 421 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-F 421 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-H
Confidence 8876332 5667888999999999999999999988874 443 567899999999999999999999999987654 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCCC
Q 012111 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 467 (471)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 467 (471)
...|+.+...|-..|+.+.|+..+.+.+. +.|. ...++.|...|-.+|+..+|..-+++.++++|+..+.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 67899999999999999999999999987 4565 4678889999999999999999999999999987654
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.2e-19 Score=175.29 Aligned_cols=365 Identities=10% Similarity=0.022 Sum_probs=292.6
Q ss_pred HHhhcHHHHHHHHHHhhhccC-ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
.++.+|+.---+|....+..- --.+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 467777766666665543310 0123344566777888999999999999999887544 45666677777888999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
|++.|+++.... +.+...+..+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999998732 4456778888899999999999999999998863 4467888899999999999999999999887
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 012111 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (471)
... +.+...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++.+.+.... +..
T Consensus 172 ~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 172 QEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 653 2333344333 347889999999999999877643344555566678889999999999999999887543 577
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEK----MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (471)
.+..+...+...|++++ |...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 78889999999999986 899999998863 336778999999999999999999999999988765 677788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 404 SAYGQAGDVEKMGELFLTMKERHCVPDNIT-FATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
.++...|++++|+..|+++.+. .|+... +..+..++...|+.++|...++++++..|+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999875 465544 33456788999999999999999999988754
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.1e-18 Score=173.96 Aligned_cols=403 Identities=8% Similarity=-0.030 Sum_probs=286.2
Q ss_pred hhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhc
Q 012111 47 AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126 (471)
Q Consensus 47 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (471)
....+...++..++++.+..... ..+.....+..+...+...|++++|+++|+.+.+.. |.+...+..++.++..
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~---~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRV---HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 33344444455555444433322 233444456677777778888888888888888764 5666777788888888
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 206 (471)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 206 (471)
.|++++|...++++.+... .+.. +..+..++...|+.++|+..++++.+. .+.+...+..+..++...+..+.|++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 8888888888888887632 2555 777888888888888888888888873 23455556667777777788888888
Q ss_pred HHHHHHHCCCCCCH------HHHHHHHHHHHc-----cCCH---HHHHHHHHHHHHcCCCCCCHH-HH----HHHHHHHH
Q 012111 207 ILAEMSYLGIECSA------VTYNTIIDGYGK-----AKKF---EEMESSFSAMVESGGCHPDIF-TL----NSMISAYG 267 (471)
Q Consensus 207 ~~~~~~~~g~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~ 267 (471)
.++.... .|+. .....+++.... .+++ ++|++.++.+.+.....|+.. .+ ...+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8876553 2221 112222222221 2234 678888888875422233321 11 11134456
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHH
Q 012111 268 NSGNIEKMEKWYNEFNLMGVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIE 343 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 343 (471)
..|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|..+|+.+.+..... ....+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999877532 322 22335778999999999999999987653221 1345666777889999999
Q ss_pred HHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012111 344 KMEEYFKKMKHRGM-----------KPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409 (471)
Q Consensus 344 ~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (471)
+|..+++.+..... .|+ ...+..+...+...|+.++|+++++++....+. +...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 99999999987521 123 234567778899999999999999999988766 788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 410 GDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 410 g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
|++++|++.+++..+. .|+ ...+..+...+...|++++|..+++++++..|+..
T Consensus 407 g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999985 465 56666777889999999999999999999988754
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=6.3e-19 Score=183.75 Aligned_cols=360 Identities=11% Similarity=0.065 Sum_probs=212.7
Q ss_pred HHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-CHHHHH------------
Q 012111 87 EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP-SVDVYT------------ 153 (471)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~------------ 153 (471)
.+...|++++|+..|+.+.+.. |.+..++..+..++.+.|++++|...|++..+..... ....|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3456799999999999998875 6678889999999999999999999999988764322 111121
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----
Q 012111 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG---- 229 (471)
Q Consensus 154 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---- 229 (471)
.....+.+.|++++|+..|+++.... +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 22446678899999999999998742 4456677788888999999999999999988764 3334444433333
Q ss_pred --------------------------------------HHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 012111 230 --------------------------------------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271 (471)
Q Consensus 230 --------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (471)
+...|++++|++.|++..+.. +.+...+..+...|.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 334566666666666666542 3344455566666667777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCH
Q 012111 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV---------TYNIVIETFGKAGHI 342 (471)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~ 342 (471)
+++|...++++.... +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 777777776665432 2233333333333444455555555544432211111100 011122333444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
++|..+++. .+.+...+..+...+.+.|++++|...|+.+.+..+. +...+..++..+...|++++|++.++..
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444431 1223344455555555556666666666555555443 4555555555555556666666655555
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 423 KERHCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 423 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
.+. .| +..++..+..++...|++++|.+++++++...+
T Consensus 664 l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 664 PAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred hcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 442 22 233344444555555666666666655555443
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.6e-18 Score=180.72 Aligned_cols=394 Identities=9% Similarity=-0.013 Sum_probs=298.6
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHH------------
Q 012111 50 DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTF------------ 117 (471)
Q Consensus 50 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------ 117 (471)
.+....+...+...+...+...| ..+..+..+-..+.+.|++++|++.|+.+.+..+-.+....+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P---~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP---KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34445666777777776666433 345666677777889999999999999998764211121111
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHH-------
Q 012111 118 TKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI------- 190 (471)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------- 190 (471)
......+.+.|++++|...|+++.+... .+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 2234567789999999999999998743 367778889999999999999999999988732 222323222
Q ss_pred -----------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012111 191 -----------------------------------LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235 (471)
Q Consensus 191 -----------------------------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 235 (471)
+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 2233456789999999999998774 4467788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCC
Q 012111 236 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---------TLNILTKSYGRAGM 306 (471)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll~~~~~~~~ 306 (471)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 511 ~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999998754 3345555555566778999999999998864432222221 23345677889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 386 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 386 (471)
.++|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|+.++|.+.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999872 23456677788899999999999999999999864 34688899999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 387 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VP---DNITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
+.+..+. +..++..+..++...|++++|.++++++....- .| +...+..+...+...|++++|...+++++.
T Consensus 663 ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8876544 566777888899999999999999999987421 12 234566677889999999999999999975
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=7.2e-18 Score=165.20 Aligned_cols=368 Identities=11% Similarity=-0.015 Sum_probs=283.5
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHh
Q 012111 46 EAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125 (471)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (471)
.....+.+.+++..++..+...+...+ .+..+......+.+.|++++|++.++.+.+.+ +.+..++..+..++.
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p----~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 345566777888888888888776544 24466677777889999999999999999875 667789999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCC--------------------------------CCHHHHHHH------------------
Q 012111 126 KCKQPEQASLLFEVMLSDGLK--------------------------------PSVDVYTAL------------------ 155 (471)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~--------------------------------~~~~~~~~l------------------ 155 (471)
..|++++|..-|......+.. |........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998766544322100 000000000
Q ss_pred ---------HHHH------HhcCCHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012111 156 ---------VSAY------GQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219 (471)
Q Consensus 156 ---------i~~~------~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 219 (471)
+... ...+++++|++.|++........| ....+..+...+...|++++|...++...+.. +-.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0000 112578899999999887322233 44568888888899999999999999998763 334
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 299 (471)
...|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..... +.+...+..+..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 6788889999999999999999999998864 4567789999999999999999999999998764 556778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHh
Q 012111 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI------TYCSLVSAYSK 373 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~ 373 (471)
++.+.|++++|...|+...+... .+...++.+...+...|++++|...|++........+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999887632 357788999999999999999999999988753211111 12222333445
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
.|++++|.+++++..+.++. +...+..+...+.+.|++++|++.|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 69999999999999887654 5667899999999999999999999998864
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=9.8e-17 Score=157.24 Aligned_cols=410 Identities=11% Similarity=0.047 Sum_probs=307.5
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHH
Q 012111 43 IQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMV 122 (471)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (471)
......-...+.+.+..+++.+.+.+...|.. +..+...+..+...|+.++|+..++.+.... +........+..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~---~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ 110 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ---SGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAAR 110 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc---hhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHH
Confidence 44555666677777888888888887755433 2223366666778899999999999998322 333444444567
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 123 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202 (471)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 202 (471)
.+...|++++|.++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHH
Confidence 889999999999999999988654 5777888889999999999999999999873 566666655555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH----------------------------------------
Q 012111 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS---------------------------------------- 242 (471)
Q Consensus 203 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~---------------------------------------- 242 (471)
+|++.++++.+.. +-+...+..++.++.+.|-...|.++
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999999875 44677777777776666644444333
Q ss_pred --------HHHHHHcCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 012111 243 --------FSAMVESGGCHPDI-----FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309 (471)
Q Consensus 243 --------~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 309 (471)
++.+....+..|.. ....-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 23333221222321 12223456778899999999999999988876667788899999999999999
Q ss_pred HHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CCCH-HHHHHHHHH
Q 012111 310 MRSVMDFMQKRFF-----FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-------------KPNS-ITYCSLVSA 370 (471)
Q Consensus 310 a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~-~~~~~li~~ 370 (471)
|..++..+..... .++......|..++...+++++|..+++.+.+... .||- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999866431 22344457788999999999999999999987311 1222 234456777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 012111 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEA 449 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 449 (471)
+...|+..+|++.++.+....+. |......+...+...|.+.+|.+.++..... .|+ ..+......++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHH
Confidence 88999999999999999888776 9999999999999999999999999776653 554 5566677888999999999
Q ss_pred HHHHHHHHHHhhhcCC
Q 012111 450 AQNLENKMIAMKENSG 465 (471)
Q Consensus 450 A~~~~~~m~~~~~~~~ 465 (471)
|.++.++.++..|+..
T Consensus 503 A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 503 MELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHhhCCCch
Confidence 9999999998888754
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.2e-15 Score=152.38 Aligned_cols=381 Identities=12% Similarity=0.052 Sum_probs=282.4
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHH
Q 012111 45 KEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVML 124 (471)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (471)
......+....+...+.+.+...+...| ..+.........+...|++++|+..++.+.+.. |.+.. +..+..++
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l 126 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHH
Confidence 4455667777888888888887776543 335556677777889999999999999999875 66667 88899999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH------HHHHHHHHHHH--
Q 012111 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV------YTYSILIKSCT-- 196 (471)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~ll~~~~-- 196 (471)
...|+.++|+..++++.+.... +...+..+..++...+..+.|+..++.... .|+. .....++....
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999987544 667777788888899999999999987764 2332 11222222222
Q ss_pred ---hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 012111 197 ---KFHRF---DLIEKILAEMSYL-GIECSAV-TY----NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264 (471)
Q Consensus 197 ---~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (471)
..+++ +.|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+...|+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 12234 6788888888754 1222221 11 111345567799999999999998764222432 2233577
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HH
Q 012111 265 AYGNSGNIEKMEKWYNEFNLMGVKA---DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-----------FPT---VV 327 (471)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~ 327 (471)
+|...|++++|+.+|+++....... .......+..++...|++++|..+++.+.+... .|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 8999999999999999987643111 134566677788999999999999999887632 123 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
.+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.++++....+. +...+..++..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 45567788899999999999999998863 446788899999999999999999999999988755 6777778888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
..|++++|..+++++.+. .|+......+-+.+
T Consensus 439 ~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999999999999984 57666554444443
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.5e-15 Score=148.98 Aligned_cols=378 Identities=9% Similarity=-0.006 Sum_probs=265.0
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (471)
.+......+-...+.|+++.|++.|+.+.+.. |.+......++..+...|+.++|...+++.... ..........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHH
Confidence 44444455555679999999999999999864 333222338888888999999999999999832 122344444456
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012111 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 236 (471)
..+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 78889999999999999999843 445666778888899999999999999999876 55655565555555556777
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----------------------------------
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE----------------------------------- 281 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------------------------------- 281 (471)
.+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+
T Consensus 186 ~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 67999999998874 44555666666666666655444443332
Q ss_pred -------------HHhC-CCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 282 -------------FNLM-GVKADI-Q----TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342 (471)
Q Consensus 282 -------------~~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (471)
+... +..|.. . ...-.+-++...|++.++++.++.+...+.+....+-..+..+|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 2210 111211 1 11223445667788888888888888777554555677788888888888
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CcCH---HHHHHHH
Q 012111 343 EKMEEYFKKMKHRG-----MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV-----------ILDT---PFFNCII 403 (471)
Q Consensus 343 ~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~ 403 (471)
++|..+|+.+.... ..++......|..++...+++++|..+++.+.+..+ .|+. ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 88888888886542 122344456788888888888888888888876322 1221 2334456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
..+...|+..+|++.++++... -+-|......+...+...|..+.|++.++.+....|..
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 6777888888888888888764 23467777778888888888888888887777776553
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=4.3e-14 Score=141.81 Aligned_cols=346 Identities=14% Similarity=0.080 Sum_probs=153.3
Q ss_pred HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH--
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-G-LKPSVDVYTALVSAYGQSGLL-- 165 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~~~~-- 165 (471)
..+...+|.+.+..+.+.. +-+....-.+.-...+.|+.++|.++|+..... + ..++....+-++..|.+.+..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3455555666555555542 345555555555566666677777766666552 1 122344444566666655542
Q ss_pred -HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHH
Q 012111 166 -DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE---KILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 166 -~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a 239 (471)
.++..+-..+.. +.. +.-.|+...+. ..+....... ++ +...|..+..++.. ++.++|
T Consensus 432 ~~~~~~l~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 432 PAKVAILSKPLPL-----AEQ---------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred hHHHHHhcccccc-----chh---------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 222222110000 000 00011111111 1111111110 22 34444444444443 444455
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (471)
...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...++...+
T Consensus 496 i~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 496 LYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5544444332 233222222233334455555555555554322 22233333444444555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 012111 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399 (471)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 399 (471)
.... ....+..+...+...|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++.....+. +...+
T Consensus 571 l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~ 646 (987)
T PRK09782 571 RGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQ 646 (987)
T ss_pred cCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 3211 1122222222223335555555555555543 334444555555555555555555555555554433 44445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 400 NCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 400 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+.+..++...|++++|+..+++..+. .| +...+..+..++...|++++|...++++++..|+.
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 55555555555555555555555442 22 33444455555555555555555555555555443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7.7e-15 Score=126.24 Aligned_cols=345 Identities=17% Similarity=0.171 Sum_probs=263.6
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (471)
|.+.++|..+|.++++.-..+.|.+++++-.+...+.+..+||.+|.+-.-..+ .+++.+|.. ..+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcCCchHhHHH
Confidence 567789999999999999999999999999988888899999999986543322 678888988 678999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHc-CC-----C-CCCHHH
Q 012111 191 LIKSCTKFHRFDL----IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVES-GG-----C-HPDIFT 258 (471)
Q Consensus 191 ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~-~~-----~-~~~~~~ 258 (471)
++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++..+... .| . +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 67788999999999999999999999999887644 44555554322 11 1 235566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 259 LNSMISAYGNSGNIEKMEKWYNEFNLMG----VKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331 (471)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (471)
|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|.....+.....|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7888899999999999998877665432 2333 23567788888889999999999999998888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHHhC
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-LI--------MK-----VDSIL-------RQVENS 390 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----a~~~~-------~~~~~~ 390 (471)
++++....|.++-.-++|.+++..|..-+.....-++..+++.. .. .. |..++ .++.+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 99999999999999999999998886655555555555555544 11 11 11111 12222
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 391 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-VPDNITFA---TMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
........+...-.+.+.|..++|.++|..+...+- .|-....+ -++..-.+..+...|...++-|...+.
T Consensus 518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 334566778888889999999999999999865432 24444444 455666778889999999888865543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=4.7e-14 Score=141.51 Aligned_cols=358 Identities=12% Similarity=0.026 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+...+..+.+.++++.|.++.. +.|.......-.......+...++...+..|.+... -+....-.+.-..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~ 386 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQL 386 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34445666666777775554421 123322222222222344666666666666665422 2555555555556
Q ss_pred HhcCCHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 012111 160 GQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 238 (471)
...|+.++|.++|+..... .+-..+....+-++..|.+.+......++..-.. +++...- +.-.|+..+
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~ 456 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPG 456 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhh
Confidence 6777788888888777651 1122334445566777777665333322222111 1111111 111344444
Q ss_pred HHHHHHHHHHcCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012111 239 MESSFSAMVESGGC-HP--DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315 (471)
Q Consensus 239 a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 315 (471)
+...+......-+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444333222 34 56778888888776 8898999988887654 4665554455666678999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 012111 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 395 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (471)
.+... .|+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+ +
T Consensus 534 ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~ 608 (987)
T PRK09782 534 KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--S 608 (987)
T ss_pred HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--C
Confidence 88665 3444556677788899999999999999998864 23334444444555667999999999999998764 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
...+..+..++.+.|++++|+..+++.... .| +...+..+..++...|+.++|...++++++..|...
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 788999999999999999999999999985 45 566777888899999999999999999999988754
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=4.6e-14 Score=132.44 Aligned_cols=369 Identities=11% Similarity=0.043 Sum_probs=287.9
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 164 (471)
...+...|++++|.+++.++.++. +-+...|.+|..+|-+.|+.+++...+-.....+.. |...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhccc
Confidence 344456699999999999999986 778899999999999999999999988776665544 77999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY----NTIIDGYGKAKKFEEME 240 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~~~~~~a~ 240 (471)
++.|.-.|.+..+. .+++...+---...|-+.|+...|..-|.++.....+.+..-+ ..+++.+...++.+.|.
T Consensus 223 i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 223 INQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999973 2556666666778899999999999999999987533333322 34566777888889999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------------------
Q 012111 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL-------------------------- 294 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------- 294 (471)
+.++......+-..+...++.++..+.+...++.+......+......+|..-+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888775444556667889999999999999999988887662222222111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 295 NILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 295 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
-.++-++...+..+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+.....--+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 123334444555555555555555555 333566888999999999999999999999998754556789999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhc
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK--------ERHCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~ 444 (471)
..|..++|.+.|+.+....+. +..+--.|...+.+.|+.++|.+.+..+. ..+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999999987665 66677788888999999999999999854 234566677777777888999
Q ss_pred CCHHHHHHHHHHHHH
Q 012111 445 GMTEAAQNLENKMIA 459 (471)
Q Consensus 445 g~~~~A~~~~~~m~~ 459 (471)
|+.++-......|+.
T Consensus 540 gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 540 GKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHHHHHHHH
Confidence 998876666555554
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=9.8e-14 Score=119.57 Aligned_cols=361 Identities=12% Similarity=0.133 Sum_probs=265.9
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (471)
+-++.++...|..+++-...+.|.++|++..... .+.+..+||.+|.+-.-.. ..++..+|....+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 4567788899999999999999999999998776 4788899999988654332 3789999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC--C--C----CCCHH
Q 012111 155 LVSAYGQSGLLDE----AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL-IEKILAEMSYL--G--I----ECSAV 221 (471)
Q Consensus 155 li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--g--~----~~~~~ 221 (471)
++.+..+.|+++. |.+++.+|++ .|+.|...+|..+|..+++.++..+ +..++.++... | + +-+..
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999998764 5678899999 7999999999999999999888754 44444444322 2 2 22455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGG---CHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (471)
.|...+..|....+.+-|.++...+....+ +.|+ ..-|..+....|.....+....+|+.|+-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 667788888899999999888766632211 1222 3456777888899999999999999999888889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C--------------------HHHHHHHHHHHHH
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-H--------------------IEKMEEYFKKMKH 354 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------------------~~~a~~~~~~m~~ 354 (471)
.++++..-.|.++-.-+++..+...|.......-..++..+++.. + .+.....-.+|.+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999998888775444444444444444433 1 0111111223343
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012111 355 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFN---CIISAYGQAGDVEKMGELFLTMKERHCVPD 430 (471)
Q Consensus 355 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 430 (471)
. .-.....+.++-.+.+.|..++|.+++..+.+. +-.|-....| .++..-.+.++...|..+++-|...+...-
T Consensus 518 ~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 518 Q--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred c--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 3 345567788888899999999999999998543 3334444455 556666778899999999999987654333
Q ss_pred HHHHHHHHHHHHh
Q 012111 431 NITFATMIQAYNA 443 (471)
Q Consensus 431 ~~~~~~l~~~~~~ 443 (471)
...-+.+...|.-
T Consensus 596 E~La~RI~e~f~i 608 (625)
T KOG4422|consen 596 EGLAQRIMEDFAI 608 (625)
T ss_pred hHHHHHHHHhcCc
Confidence 3233444444433
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.3e-13 Score=130.38 Aligned_cols=377 Identities=11% Similarity=0.055 Sum_probs=216.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCccCC-hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 81 VLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR-CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 81 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
+...-+.+...|+++.|...|....+.. +.+ +..+..+...+.+.|+++.+...|+........ +..+...|...|
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHH
Confidence 3344444455556666666555555432 122 233444555555556666666655555554211 344444444444
Q ss_pred HhcC----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHH
Q 012111 160 GQSG----LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA----EMSYLGIECSAVTYNTIIDGYG 231 (471)
Q Consensus 160 ~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~~l~~~~~ 231 (471)
+..+ ..+.|..++.+..+. .+.|...|-.+...+... +...++.+|. .+...+.++.+...|.+...+.
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 4443 344555555554441 234444554444444332 2222244443 2334444566666777777777
Q ss_pred ccCCHHHHHHHHHHHHHcCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------------
Q 012111 232 KAKKFEEMESSFSAMVESGG--CHPD------IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG----------------- 286 (471)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------- 286 (471)
..|++++|...|......-. ..++ ..+--.+...+-..++++.|.+.|..+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 77777777777766654300 0111 1122223333444445555555555554321
Q ss_pred ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh-----------
Q 012111 287 ----------------VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGK----------- 338 (471)
Q Consensus 287 ----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~----------- 338 (471)
...++..+..+...+.+...+..|..-|..+.+.- ..+|..+.-.|...|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 01122222222333333344444444333333221 11233333334443332
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 339 -AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 339 -~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 417 (471)
.+..++|+++|.+.++.. +-|...-+-+.-.++..|++..|..+|.++.+.... ...+|-.+..+|...|++..|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHH
Confidence 234678889988888764 447777788888899999999999999999887543 56678889999999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 418 LFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 418 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
+|+..... +-.-+..+...|.+++.+.|.+.+|.+.+..++...|...
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 99887654 3345778888999999999999999999999888877643
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=2.1e-13 Score=125.83 Aligned_cols=285 Identities=11% Similarity=0.029 Sum_probs=198.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHH
Q 012111 162 SGLLDEAFSTINDMKSVSDCKPDVYT-YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN--TIIDGYGKAKKFEE 238 (471)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~ 238 (471)
.|+++.|.+.+....+. .+++.. |.....+..+.|+++.+.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 57777777666665441 112222 222233446777777777777777654 34433222 33556777778888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHH
Q 012111 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI-------QTLNILTKSYGRAGMYDKMR 311 (471)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~ 311 (471)
|...++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888777776653 445566777777777778888888777777766543222 12233333333444556666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 666665433 2346777888889999999999999999988874 4555322 2334445689999999999988877
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
+. |...+..+.+.+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++....-
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 66 7788889999999999999999999999874 7999998899999999999999999999887654
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.5e-13 Score=127.60 Aligned_cols=292 Identities=10% Similarity=0.004 Sum_probs=194.5
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012111 161 QSGLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 239 (471)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.|.+++.+..+....+...........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 467788887777776552 3433 233444556667788888888887776542122222333346777778888888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHH
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN-ILTKSY---GRAGMYDKMRSVMD 315 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 315 (471)
...++.+.+.. +.+......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++...+.
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888887764 445566777777888888888888888888776533 332221 111111 22222233333444
Q ss_pred HHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 316 FMQKRFF---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT---YCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 316 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
.+.+... ..+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4443321 1267788888889999999999999999998863 33331 11111222345778888888888887
Q ss_pred CCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 390 SDVILDT--PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 390 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++....-
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6554 55 67788999999999999999999954433357999999999999999999999999999875543
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=5.8e-13 Score=122.96 Aligned_cols=288 Identities=9% Similarity=0.022 Sum_probs=129.4
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHH-HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKL-MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT--ALVSAYGQSGLLDE 167 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~ 167 (471)
.|+|+.|.+.+....+.. ++...+..+ .....+.|+++.|...+.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 466666665555544321 122222222 22335556666666666666543 23322221 22445555666666
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
|...++++.+.. +-+...+..+...|.+.|+++.|.+++..+.+.+..++ .....+-
T Consensus 172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~-------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE-------------------- 228 (398)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH--------------------
Confidence 666666655421 33444555555556666666666666666655543211 1111000
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 012111 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (471)
..+|..++.......+.+...++++.+... .+.+......+...+...|+.++|..+++...+. .++..
T Consensus 229 --------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 229 --------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred --------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 011222222222223333333333333211 1334444444555555555555555555444442 22221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
. .++.+....++.+++.+..+...+.. +-|+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.
T Consensus 298 l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 L--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred H--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 1 11222223355555555555554431 223344445555555555555555555555543 244444455555555
Q ss_pred hcCCHHHHHHHHHHH
Q 012111 408 QAGDVEKMGELFLTM 422 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~ 422 (471)
+.|+.++|.+++++.
T Consensus 373 ~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 373 RLHKPEEAAAMRRDG 387 (398)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=4e-13 Score=116.74 Aligned_cols=350 Identities=10% Similarity=0.086 Sum_probs=226.5
Q ss_pred HHHHhhcHHHHHHHHHHhhhccC-ccC--ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 87 EAIKQKKWQLALKIFGLLRQQQW-YQA--RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163 (471)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 163 (471)
...+...+..|+++|+.+..+-+ +.. .....+.+...+.+.|+++.|+..|+...+. .|+..+--.|+-++..-|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 35567777777777777665520 000 1123344444556667777777777766654 455544334444444456
Q ss_pred CHHHHHHHHHHhhcCC-----------CCCCCHHHHHHH-----------------------------------------
Q 012111 164 LLDEAFSTINDMKSVS-----------DCKPDVYTYSIL----------------------------------------- 191 (471)
Q Consensus 164 ~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~l----------------------------------------- 191 (471)
+.++..+.|.+|.... ...|+....+..
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 6666666665554410 011111111111
Q ss_pred ----------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--H-------------------
Q 012111 192 ----------------------IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII--D------------------- 228 (471)
Q Consensus 192 ----------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~------------------- 228 (471)
..-+.+.|+++.|.++++-+.+..-..-...-+.|- +
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 012456899999999998776553221111111111 1
Q ss_pred ---------------HHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 012111 229 ---------------GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293 (471)
Q Consensus 229 ---------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 293 (471)
.....|++++|.+.|++..... .......-.+.-.+...|+.++|+..|-++... +..+..+
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 1123477888888888876542 112222223334567788889998888877542 2456777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 373 (471)
...+.+.|....+..+|++++.+.... ++.|+...+.|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|..
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHh
Confidence 777888888888888888888766554 4457888888999999999999998887665443 35578888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAY-GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446 (471)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 446 (471)
..-+++++.+|++..- +.|+..-|..++..| .+.|++..|.++|+...+. ++-|...+.-|++.+...|.
T Consensus 639 tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999987654 467888888877655 4679999999999988765 66788888888888887775
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=7.9e-13 Score=122.75 Aligned_cols=292 Identities=11% Similarity=0.035 Sum_probs=144.8
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCCh-hHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARC-QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
...|+++.|.+.+....+.. |+. ..+-....+..+.|+++.|.+.+....+....+.....-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 35677777777777766542 332 33344455666677777777777776654322222333334666677777777
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCCHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN-TIIDGY---GKAKKFEEMESSF 243 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 243 (471)
|...++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.++. +...+. .-..++ ...+..+.+.+.+
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 777777777632 335556667777777777777777777777776543 222221 111111 1112222222233
Q ss_pred HHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 244 SAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL-NILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 244 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
..+.+... .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~-------------------- 306 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLP-------------------- 306 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHH--------------------
Confidence 33222210 01244455555555555555555555555554432 221100 001111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 012111 321 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS--ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398 (471)
Q Consensus 321 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 398 (471)
......++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...
T Consensus 307 -------------~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 307 -------------IPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred -------------hhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 11122244444555555444431 1122 3344555555555555555555553333223344555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 399 FNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
+..+...+.+.|+.++|.++|++.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555554
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=3.7e-13 Score=116.95 Aligned_cols=372 Identities=10% Similarity=0.079 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChh-HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 012111 81 VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ-TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS----VDVYTAL 155 (471)
Q Consensus 81 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l 155 (471)
+..+...+-...-..+|+..|+-+.+.. .-|+.. .-..+...+.+...+.+|++.|.-....-...+ ....+.+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344444445566789999999998876 345544 445677789999999999999988776522222 3456666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------CCCHHHH
Q 012111 156 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI------------ECSAVTY 223 (471)
Q Consensus 156 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------------~~~~~~~ 223 (471)
.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-+...+.|..|+..-. .|+....
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 67789999999999999998763 68877654555555556777777777777765311 1121111
Q ss_pred HHH---------------------------------------------------------------HHHHHccCCHHHHH
Q 012111 224 NTI---------------------------------------------------------------IDGYGKAKKFEEME 240 (471)
Q Consensus 224 ~~l---------------------------------------------------------------~~~~~~~~~~~~a~ 240 (471)
+.- ..-+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 100 11368899999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHH--H----------------------------------HHHHhcCCHHHHHHHHHHHHh
Q 012111 241 SSFSAMVESGGCHPDIFTLNSM--I----------------------------------SAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l--~----------------------------------~~~~~~~~~~~a~~~~~~~~~ 284 (471)
+++.-..+......+. .-+.| + +.....|+++.|.+.|++...
T Consensus 440 eilkv~~~kdnk~~sa-aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASA-AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHH-HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9998775543111111 11111 0 001236788899999988875
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 012111 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364 (471)
Q Consensus 285 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 364 (471)
.+-.-....|| +.-.+-..|++++|++.|-.+...- .-+......+...|....+..+|++++.+.... ++-|+.++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 43222222333 2334667889999999887765432 226667777888888899999999999776654 45578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHh
Q 012111 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ-AYNA 443 (471)
Q Consensus 365 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~ 443 (471)
..|...|-+.|+-.+|.+.+-.--+. ++-+..+..-|..-|....-+++++.+|++..- ++|+..-|..++. ++.+
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999887655554 334788888888899999999999999998865 6899999999885 5567
Q ss_pred cCCHHHHHHHHHHHHHhhhc
Q 012111 444 LGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~~ 463 (471)
.|++..|..+++..-++-|.
T Consensus 673 sgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 89999999999998776654
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.8e-12 Score=122.85 Aligned_cols=357 Identities=12% Similarity=0.065 Sum_probs=193.5
Q ss_pred cHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 93 KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK--PSVDVYTALVSAYGQSGLLDEAFS 170 (471)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~ 170 (471)
.+..++.++..+-..+ +.++.+.+.|...|.-.|++..+..+...+...... .-...|-.+.++|-..|+++.|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3455555555555544 445555666666666666666666666665544211 112335555666666666666666
Q ss_pred HHHHhhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 012111 171 TINDMKSVSDCKPDV--YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK----KFEEMESSFS 244 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 244 (471)
.|.+..+. .++. ..+..+...+.+.|+++.+...|+...+.. +-+..+...|...|...+ ..+.|..++.
T Consensus 329 yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 329 YYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 66555441 2222 233445555666666666666666655442 223444444444444432 3344444444
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCHHHHH---------
Q 012111 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF----NLMGVKADIQTLNILTKSYGRAGMYDKMR--------- 311 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------- 311 (471)
+..+.. +.|...|..+...+....-+ .++..|..+ ...+..+.....|.+...+...|++++|.
T Consensus 405 K~~~~~--~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 405 KVLEQT--PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHhcc--cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 444332 33444444444433322222 113333222 12222344444444444444444444444
Q ss_pred -----------------------------------HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 312 -----------------------------------SVMDFMQKRFFFPTVV-TYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 312 -----------------------------------~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
..|..+.+. .|+.+ .|-.+....-..+...+|...++.....
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 444444443 11111 1111111111123444555554444322
Q ss_pred C-C----------------------------------CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHH
Q 012111 356 G-M----------------------------------KPNSITYCSLVSAYSK------------AGLIMKVDSILRQVE 388 (471)
Q Consensus 356 ~-~----------------------------------~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~ 388 (471)
. - .+|..+...|.+.|.. .+..++|.++|.++.
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 1 1 1333333444443332 235678999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
+.++. |...-|.+.-.++..|++.+|..+|....+... -+..+|..+..+|...|++..|.++|+...+.-.
T Consensus 640 ~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 640 RNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred hcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877 888889999999999999999999999988632 3567888899999999999999999998877654
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=6e-11 Score=108.02 Aligned_cols=306 Identities=10% Similarity=0.044 Sum_probs=177.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012111 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230 (471)
Q Consensus 151 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 230 (471)
+|..-.+.|.+.+.++-|..+|....+. .+-+...|......=-..|..+....+|++.... ++-....|......+
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 3444444455555555555566555542 2333444444444444455666666666666544 233344455555555
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 012111 231 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 310 (471)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 310 (471)
-..|+...|..++....+.. +.+...|...+..-.....++.|..+|.+... ..++...|..-+...--.+..++|
T Consensus 595 w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 66667777777666666553 33455666666666666667777777666554 345556665555555556666677
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 311 RSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
.++++...+. .|+ ...|-.+.+.+-+.++++.|.+.|..-.+. ++-....|..+...=-+.|.+-.|..++++..-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 7666666554 222 334555555566666666666665543332 222334455555555566666667777766666
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------------------------CCCCCHHHHHHHHHH
Q 012111 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-----------------------------HCVPDNITFATMIQA 440 (471)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~p~~~~~~~l~~~ 440 (471)
.++. +...|-..|+.-.+.|+.+.|..+..+..+. .+.-|+.+...+...
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 6655 6666666666666777666666555443321 233455566666677
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhcCCCC
Q 012111 441 YNALGMTEAAQNLENKMIAMKENSGKK 467 (471)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ 467 (471)
|+...+++.|++.|++.++.+|+.++.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchH
Confidence 777777788888888887777776653
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=5.9e-16 Score=136.56 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=51.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (471)
+..++..+...++++++.++++.+.+......+...|..+...+.+.|+.++|++.+++..+.. +.|......++..+.
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLI 191 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3333444444444444444444433322222333334444444444444444444444443321 222333333444444
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 382 (471)
..|+.+++..++....+.. +.++..+..+..++...|+.++|+.+|++..+.. +.|+.....+..++...|+.++|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 4444444333333333321 1122233334444444444444444444444321 2233334444444444444444444
Q ss_pred HHH
Q 012111 383 ILR 385 (471)
Q Consensus 383 ~~~ 385 (471)
+.+
T Consensus 270 ~~~ 272 (280)
T PF13429_consen 270 LRR 272 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 433
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.9e-12 Score=112.51 Aligned_cols=363 Identities=13% Similarity=0.023 Sum_probs=252.2
Q ss_pred HHHHHhhcHHHHHHHHHHhhhccCccCC-hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 012111 86 DEAIKQKKWQLALKIFGLLRQQQWYQAR-CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS-VDVYTALVSAYGQSG 163 (471)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~ 163 (471)
..+.+.|++++|++.|.++... .|+ +..|.....+|...|+|+++.+--....+. .|+ +..+..-..++-..|
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 3456899999999999999985 466 778899999999999999998887777765 333 334444455555666
Q ss_pred CHHHHHH----------------------HHH---------Hhh-cCCCCCCCHHHHHHHHHHHHhc-------------
Q 012111 164 LLDEAFS----------------------TIN---------DMK-SVSDCKPDVYTYSILIKSCTKF------------- 198 (471)
Q Consensus 164 ~~~~a~~----------------------~~~---------~~~-~~~~~~~~~~~~~~ll~~~~~~------------- 198 (471)
++++|+. ++. .+. ....+-|+.....+....+...
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 6555432 111 111 0123345555444444433210
Q ss_pred ------------C---CHHHHHHHHHHHHH---CCCCCC---------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 012111 199 ------------H---RFDLIEKILAEMSY---LGIECS---------AVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 251 (471)
Q Consensus 199 ------------~---~~~~a~~~~~~~~~---~g~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (471)
+ .+..|.+.+.+-.. .....+ ..+.......+.-.|+.-.|.+-|+..++..
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~- 356 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD- 356 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-
Confidence 0 12222222211110 001111 2222222233455788999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 331 (471)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (471)
+.+...|..+..+|....+.++..+.|++..+.+ +.+..+|..-.+.+.-.+++++|..=|+......+. +...|..
T Consensus 357 -~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQ 433 (606)
T KOG0547|consen 357 -PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQ 433 (606)
T ss_pred -cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHH
Confidence 2233348888889999999999999999998876 667778888888888889999999999988876332 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------cCHHHHHHHHH
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-------LDTPFFNCIIS 404 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~ 404 (471)
+..+..+.+++++++..|++.+.. ++--+..|+.....+...++++.|.+.|+..++.... +.+.+...++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 667777889999999999999887 4556789999999999999999999999998875433 11222223332
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 405 AYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
.- -.+++..|..++.+..+. .| ....|..|...-.+.|+.++|.++|++...+-
T Consensus 513 ~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 513 LQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22 238999999999999985 34 55788899999999999999999999876543
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.4e-10 Score=101.77 Aligned_cols=203 Identities=8% Similarity=0.036 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCC
Q 012111 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-------TLNILTKS---YGRAGMYDKMRSVMDFMQKRFFFP 324 (471)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~ 324 (471)
|-.+|-..+..-...|+.+...++|+..+.. ++|-.. .|..+=-+ -....+.+.+.+++....+. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 3334444455555556666666666666542 333211 11111111 12345666666666666552 222
Q ss_pred CHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 012111 325 TVVTYNIVI----ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400 (471)
Q Consensus 325 ~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (471)
...||.-+- ..-.++.++..|.+++...+ |..|-..+|...|..=.+.++++.+..+++...+.++. +..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHH
Confidence 334444332 22345667777777777655 45788888888888888889999999999999988876 788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERHC-VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
.....-...|+.+.|..+|.-.++... .-....|.+.|..-...|.++.|+.++++.++...
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 888877888999999999998887521 11234566677777788999999999999887654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6.3e-14 Score=127.53 Aligned_cols=286 Identities=14% Similarity=0.077 Sum_probs=227.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHH
Q 012111 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--IECSAVTYNTIIDGYGKAKKFEEMES 241 (471)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (471)
+..+|+..|.++.. .+.-+......+..+|...+++++|.++|+.+.+.. ..-+..+|...+-.+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 56789999999665 233444667778889999999999999999998753 112567777777655332 1222
Q ss_pred -HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 242 -SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
+-+.+.+.. +-...+|.++.++|...++++.|++.|++.++.+ +-...+|+.+..-+....++|.|...|......
T Consensus 408 ~Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 223333442 4456789999999999999999999999998754 447888999999999999999999999988765
Q ss_pred CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 012111 321 FFFPTVVTYN---IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 397 (471)
Q Consensus 321 ~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 397 (471)
++..|+ -+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.++|+++++++...+++ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 555555 45677899999999999999998854 336778888889999999999999999999988877 554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 466 (471)
.--..+..+...+++++|+..++++++. .|+ ...|..+.+.|.+.|+.+.|+.-|--|.+++|++.+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4445567778889999999999999984 565 566777779999999999999999999999998776
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=2e-11 Score=111.09 Aligned_cols=379 Identities=10% Similarity=0.015 Sum_probs=189.5
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCcc--CChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (471)
..+.++.-...|-..|..-....+.......+ +. .-..+|..-...|.+.+.++-|..+|...++.- +-+...|..
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigig-vEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlr 555 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIG-VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLR 555 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc-cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 33444444444444444444444444443332 11 112344444445555555555555555444431 123344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 155 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
....--..|..+....+|++... .++-....|......+-..|+...|..++....+.. +.+...|..-+.....+.
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccc
Confidence 44444444444444455544443 223333334444444444455555555554444432 224444444444444455
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 012111 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
+++.|..+|.+.... .|+...|..-+..---.++.++|.+++++..+. ++.-...|..+.+.+-+.++++.|...|
T Consensus 633 e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 633 ELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred cHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555555555444332 333334443333333444445555555444432 1222334444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 012111 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS---- 390 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 390 (471)
..-.+. ++-.+..|-.+...=-+.|.+-+|..++++.+-.+ +-+...|...|+.=.+.|+.+.|..++.+..+.
T Consensus 709 ~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 709 LQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred Hhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 433322 11122333333333334444444444444444332 223444444444444444444444444333221
Q ss_pred -------------------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 391 -------------------------DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445 (471)
Q Consensus 391 -------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 445 (471)
....|+.+.-.+...|....+++.|.+.|.+.+..+ +-+..+|.-+...+.++|
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 012366677778888888899999999999999852 334578888889999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCCC
Q 012111 446 MTEAAQNLENKMIAMKENSGKK 467 (471)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~~~~~ 467 (471)
.-+.-.+++.+.....|..++.
T Consensus 866 ~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 866 TEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred CHHHHHHHHHHHhccCCCCCcH
Confidence 9999999999999988877653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.6e-15 Score=133.86 Aligned_cols=260 Identities=14% Similarity=0.129 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 012111 191 LIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269 (471)
Q Consensus 191 ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (471)
+...+.+.|+++.|+++++...... .+.+...|..+.......++++.|.+.++++.+.+ +-+...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-ccc
Confidence 3555556666666666664433322 12234444445555556667777777777766543 2233445555555 566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEY 348 (471)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 348 (471)
+++++|.+++....+. .++...+..++..+...++++++..+++.+.... ...+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776655433 2445556666677777777777777777765432 234566677777777778888888888
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 349 FKKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427 (471)
Q Consensus 349 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 427 (471)
+++..+. .| |......++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++.... .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 8877775 34 46667777777777788877777777766554 235556677777888888888888888877764 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 428 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
+.|+.+...+..++...|+.++|.++.+++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 23666666777888888888888777766543
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=4.9e-12 Score=105.37 Aligned_cols=281 Identities=12% Similarity=0.101 Sum_probs=152.9
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH------H
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV------D 150 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~ 150 (471)
.++.+..-++.+ -.++.++|++.|-.+.+.+ +.+.++.-+|...|-+.|..+.|+++.+.+.++ ||. .
T Consensus 35 lsr~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~l 108 (389)
T COG2956 35 LSRDYVKGLNFL-LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLL 108 (389)
T ss_pred ccHHHHhHHHHH-hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHH
Confidence 344555555543 3556677777777777654 555666677777777777777777777777764 232 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 012111 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS----AVTYNTI 226 (471)
Q Consensus 151 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l 226 (471)
....|.+-|...|-+|+|.++|..+... + ..-......|+..|-...+|++|+++-+++.+.|-.+. ...|.-+
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 3344555666677777777777766651 1 23344556666666666777777776666665543322 1233334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012111 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306 (471)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 306 (471)
...+....+++.|..++.+..+.+ +..+..-..+.......|+++.|.+.++...+.+...-..+...|..+|...|+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 444444556666666666665542 333333344445555666666666666665555444444455555556666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012111 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 371 (471)
.++....+..+.+....++. -..+..........+.|...+.+-... +|+...+..+|..-
T Consensus 265 ~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 265 PAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 66655555555544322222 222222222233333444333333332 45555555555543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3.7e-12 Score=106.08 Aligned_cols=226 Identities=14% Similarity=0.166 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 012111 127 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV--YTYSILIKSCTKFHRFDLI 204 (471)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a 204 (471)
..+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..|+|+.+-+.+.+..+..-+. .....|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45667777777777764222 44555566777777777777777777776632222111 1233444556666666777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 205 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (471)
+.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.++-.-. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77776666544 224455566666666666666666666666554321111 12244444444445555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 282 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
..+.+ +..+..--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 54433 22333333344445555555555555555555433333334444455555555555555555555443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.6e-11 Score=103.10 Aligned_cols=333 Identities=11% Similarity=0.046 Sum_probs=242.1
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHH--H
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--Y 188 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 188 (471)
..|...+......+-+.|....|...|...... -+..|.+.+....-.-+.+.+..+.. +.+.|... =
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~ 230 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKK 230 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHH
Confidence 445555555666677888888899888887754 22334443333322333333322222 12222111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHH
Q 012111 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYG 267 (471)
Q Consensus 189 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 267 (471)
-.+..++......+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+..... .|..+|+.++-+-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 22345566677888888888899989988777666667777778899999999999998875333 25667777764432
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 347 (471)
.... +.++.+-...--+--+.|...+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+
T Consensus 311 ~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2221 112211111111445567888889999999999999999999887543 45678888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427 (471)
Q Consensus 348 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 427 (471)
-|++.++-. +-|-..|-.|.++|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|.+....|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999863 447889999999999999999999999999988766 899999999999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 428 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
. +...+..|.+.+-+.++..+|...+++-++..
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3 66888899999999999999999988877643
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.1e-11 Score=116.77 Aligned_cols=334 Identities=14% Similarity=0.080 Sum_probs=258.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 012111 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196 (471)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (471)
.-.....+...|++++|.+++.+.++.... ....|..|...|-..|+.+++...+-..-. -.+-|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 333444455569999999999999987544 788999999999999999999988766654 23567788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHH----HHHHHHHHhcCCH
Q 012111 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL----NSMISAYGNSGNI 272 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 272 (471)
+.|+++.|.-.|.+.++.. +++...+-.-+..|-+.|+...|.+.|.++.+..+ +.|..-+ ...++.+...++.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999886 66777777778889999999999999999988642 2222222 2345667778888
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---------------------------C
Q 012111 273 EKMEKWYNEFNLM-GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---------------------------P 324 (471)
Q Consensus 273 ~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~ 324 (471)
+.|.+.++..... +-..+...++.++..|.+...++.+......+...... +
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999998887662 22456667889999999999999998888777652211 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (471)
+... ..++-++......+....+..........| +...|.-+..+|...|.+.+|..+|..+......-+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 122333444445555555555556555333 5678899999999999999999999999987766688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
.++|...|.+++|.+.|+..+.. .|+ ...-.+|-..+-+.|+.++|.+.++.+.
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999874 454 4455567788899999999999999887
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=2.2e-11 Score=104.66 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=195.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 012111 162 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 241 (471)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (471)
.|++..|..+..+-.+ .+ +-....|..-..+.-..|+.+.+-+++.+.-+.--.++...+-...+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae-~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhh-cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5667777766666554 22 222334445555566666777777777666655224445555556666666777777777
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 012111 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI-------QTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
-+.++.+.. +...........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 776666653 444556666667777777777777777777666654443 24555555555555555544555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 012111 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (471)
+..... ..-++..-..++.-+.+.|+.++|.++..+..+.+..|+ .. ..-.+.+.++.+.-.+..+...+..+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 544332 233566666778888888999999998888888876665 22 222345667777777777666655443
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.+..++....-..++
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 557888899999999999999999997776 478999999999999999999999999888876554443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=8.4e-13 Score=120.32 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 298 (471)
.+.+|.++..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+... +-+-..|--+.
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG 496 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG 496 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence 34445555555555555555555555444321 1134444444444444445555555554443211 11111222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
-.|.+.++++.|+-.|+...+.++. +.+....+...+-+.|+.++|++++++...... -|+..--.-+..+...++.+
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchH
Confidence 3444555555555555544443222 333333444444445555555555555444321 12222223333344445555
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+|...++++++.-+. +..+|..+...|.+.|+.+.|+.-|--+.+
T Consensus 575 eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 575 EALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555444322 344444444555555555555555544444
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=3.6e-11 Score=103.41 Aligned_cols=292 Identities=10% Similarity=0.089 Sum_probs=147.0
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 170 (471)
.|+|.+|.+......+.+ .-....|..-..+.-+.|+.+.+-..+.+..+....++...+-+..+.....|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 455555555555544432 122223333344444455555555555555544223344444444445555555555555
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 012111 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (471)
-++++.+.. +.++........+|.+.|++.....++..|.+.|+--+...- .
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------------~----- 226 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------------R----- 226 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH---------------------H-----
Confidence 555544421 233444455555555555555555555555555433222100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 251 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 330 (471)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 330 (471)
-...+|..++.-....+..+.-...|+..-.. .+.++..-..++.-+.++|+.++|.++..+..+++..|...
T Consensus 227 ---le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~--- 299 (400)
T COG3071 227 ---LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC--- 299 (400)
T ss_pred ---HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---
Confidence 01124555555555555555544555554322 24445555555666666666666666666666655544411
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 410 (471)
..-.+.+-++.+.-.+..+.-.+. .+-++..+..|...|.+.+.+.+|.+.|+...+. .|+...|+.+..++.+.|
T Consensus 300 -~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 300 -RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLG 375 (400)
T ss_pred -HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcC
Confidence 112234445555555555544433 1223455666666666666666666666655543 356666666666666666
Q ss_pred CHHHHHHHHHHHH
Q 012111 411 DVEKMGELFLTMK 423 (471)
Q Consensus 411 ~~~~a~~~~~~~~ 423 (471)
+..+|.++.++..
T Consensus 376 ~~~~A~~~r~e~L 388 (400)
T COG3071 376 EPEEAEQVRREAL 388 (400)
T ss_pred ChHHHHHHHHHHH
Confidence 6666666666554
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.8e-11 Score=104.32 Aligned_cols=314 Identities=12% Similarity=0.071 Sum_probs=146.8
Q ss_pred HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT--ALVSAYGQSGLLDE 167 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~ 167 (471)
+.|..+.|+..|......- |-.-.+|..|...+. +.+.+..+.. |.+.+..... .+..++-...+.++
T Consensus 176 ~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVV-----GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred hhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 4567778888887776542 434344444433322 1222111111 1111111111 12234444445555
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNTIIDGYGKAKKFEEMESSFSA 245 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (471)
+++-.+.... .|.+-+...-+....+.....|+++|+.+|+++.+... --|..+|..++-.-....++.- +-+.
T Consensus 246 ~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~---LA~~ 321 (559)
T KOG1155|consen 246 ALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY---LAQN 321 (559)
T ss_pred HHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH---HHHH
Confidence 5555555544 34333333333333334445556666666666655420 0134444444433221111110 1111
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 012111 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (471)
..+.+...| .|+..+.+-|.-.++.+.|...|+...+.+ +.....|+.+.+-|....+...|..-++...+..+. |
T Consensus 322 v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 322 VSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred HHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 111111222 345555555555555555555555555443 334445555555555555555555555555554222 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
-..|-.|.++|...+-..-|+-.|++..... +-|...|..|..+|.+.++.++|++.|.+....+-. +...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 4555555555555555555555555555431 224555555555555555555555555555554422 44555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012111 406 YGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~ 423 (471)
|-+.++..+|...|.+.+
T Consensus 476 ye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 555555555555555444
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.1e-08 Score=90.19 Aligned_cols=241 Identities=10% Similarity=0.068 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHH-----H---HHhcCCHHHHHHHHHHHHhCC
Q 012111 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI--FTLNSMIS-----A---YGNSGNIEKMEKWYNEFNLMG 286 (471)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-----~---~~~~~~~~~a~~~~~~~~~~~ 286 (471)
+.|-.+|--.++.-...|+.+...++|++.+.. ++|-. ..|...|- + -....|.+.+.++|+...+.
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 334555566666666778888888888888765 45522 12222221 1 13468899999999998873
Q ss_pred CCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 012111 287 VKADIQTLNILTKS----YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 362 (471)
Q Consensus 287 ~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 362 (471)
++....||..+=-. -.++.++..|.+++..... ..|...+|...|..=.+.++++.+..+|++.+.-+ +-|..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 46666666554433 3467889999999987654 57888899999999999999999999999999875 34778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
+|......=...|+.+.|..+|..+++.. .......|.+.|..-...|.++.|..+++++.+. .+...+|..+...-
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe 550 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHh
Confidence 88888888889999999999999988653 2233456777777778899999999999999985 44555666655433
Q ss_pred H-----hcC-----------CHHHHHHHHHHHHHhhhcCC
Q 012111 442 N-----ALG-----------MTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 442 ~-----~~g-----------~~~~A~~~~~~m~~~~~~~~ 465 (471)
. +.| ....|+.+|+++...-.+.+
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 2 334 56788888888876554443
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=4.9e-11 Score=102.62 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335 (471)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 335 (471)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555556666666666666666655432 334455555666666666666666666666554322 34455566666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 414 (471)
+...|++++|...+++....... .....+..+...+...|++++|...+++..+..+. +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 67777777777777776654211 23445666677777888888888888877766543 55667777788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012111 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 415 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
|...++++.+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888887765 3445666667777777888888888887777654
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4e-09 Score=91.26 Aligned_cols=312 Identities=9% Similarity=-0.035 Sum_probs=222.5
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012111 146 KPSVDVYTALVSAYG--QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223 (471)
Q Consensus 146 ~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 223 (471)
+|...+....+.+++ ..++...|...+-.+.....++-|+.....+.+.+...|+.++|...|+.....+ +-+....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhH
Confidence 344444444454443 3455555655555554444567788888899999999999999999999887553 1122222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012111 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303 (471)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (471)
....-.+.+.|+++....+...+.... ..+...|-.-.......+++..|+.+-++.++.+ +.+...|-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 333344566788888777777765442 3344455555566667788899999888887754 4455566555667778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHH
Q 012111 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYS-KAGLIMKVD 381 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~ 381 (471)
.|+.++|.-.|...+...+ -+..+|.-|+.+|...|++.+|..+-+...+. +.-+..+...+. ..|. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 8999999998988776522 36789999999999999999988877766554 344566666553 3332 223457788
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
++++...+..+. -....+.+...+...|....++.++++... ..||....+.|.+.+...+.+.+|...|..+++.+
T Consensus 425 kf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 888888776544 345667788889999999999999998887 47899999999999999999999999999999999
Q ss_pred hcCCC
Q 012111 462 ENSGK 466 (471)
Q Consensus 462 ~~~~~ 466 (471)
|++..
T Consensus 502 P~~~~ 506 (564)
T KOG1174|consen 502 PKSKR 506 (564)
T ss_pred ccchH
Confidence 87654
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=1.8e-10 Score=111.20 Aligned_cols=267 Identities=12% Similarity=0.031 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHH
Q 012111 183 PDVYTYSILIKSCTK-----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG---------KAKKFEEMESSFSAMVE 248 (471)
Q Consensus 183 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 248 (471)
.+...|...+.+... .+++++|.++|++..+.. +-+...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344555555555321 234578888888887663 224555555554443 23457888888888877
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 012111 249 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 328 (471)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 328 (471)
.. +.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 64 4466777778888888899999999998888765 556677788888888899999999999888876443 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
+..++..+...|++++|...++++.... .| +...+..+..++...|+.++|...+.++....+. +....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHh
Confidence 3334445666788899999888877653 23 4555677778888889999999998887655332 4445566666677
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 408 QAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
..| +.|...++.+.+. .-.|....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 766 4777777766543 112222222 33344556666666555 6666554
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=8.7e-10 Score=93.39 Aligned_cols=394 Identities=9% Similarity=-0.001 Sum_probs=224.2
Q ss_pred hHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcC
Q 012111 48 EKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC 127 (471)
Q Consensus 48 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (471)
...+.....+.+++..++-......+...+...++. .-..+.|++++|+..|..+.+.. .++.+....|.-++.-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia--~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIA--HCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHH--HHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHH
Confidence 333344445666666655444332222211122221 22346788888888888887754 56666777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 128 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 207 (471)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 207 (471)
|.+.+|..+.....+ ++-.-..|+...-+.|+-++-..+-+.+.. ...--.+|.+.......+++|+++
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888888877665432 344445555666667776666666555543 112233444444444568899999
Q ss_pred HHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 012111 208 LAEMSYLGIECSAVTYNT-IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-- 284 (471)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 284 (471)
+...... .|+-...|. +.-+|.+..-++-+.+++.-..+. ++.+....|.......+.=+-..|..-.+++.+
T Consensus 174 YkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 174 YKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 9988866 345555554 345667778888888888887776 233444444333222221111111111111111
Q ss_pred ------------CC------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------
Q 012111 285 ------------MG------------VKA-----DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--------------- 320 (471)
Q Consensus 285 ------------~~------------~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------- 320 (471)
.+ +-| -+..-..|+-.|.+.+++.+|..+.+.+...
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAAL 329 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHh
Confidence 00 000 0111233444566667777776665543221
Q ss_pred -----------------------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012111 321 -----------------------FFFPTV-VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376 (471)
Q Consensus 321 -----------------------~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+..-|. ..-.++...+.-..++++++..+..+...-..-|. ..-.+.++.+..|+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcC
Confidence 110010 01112222223333455555555555544222222 23346778888999
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 012111 377 IMKVDSILRQVENSDVILDTPFF-NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI-QAYNALGMTEAAQNLE 454 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~ 454 (471)
+.+|+++|-++....++ |..+| ..|.++|.+.++.+.|++++-++.. +.+..+...+| .-|.+.+++=-|-+.|
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888877777 55555 5567889999999999887765543 23444444444 7889999999999999
Q ss_pred HHHHHhhhcCC
Q 012111 455 NKMIAMKENSG 465 (471)
Q Consensus 455 ~~m~~~~~~~~ 465 (471)
+++..++|.|.
T Consensus 485 d~lE~lDP~pE 495 (557)
T KOG3785|consen 485 DELEILDPTPE 495 (557)
T ss_pred hHHHccCCCcc
Confidence 99999888765
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.1e-10 Score=112.70 Aligned_cols=147 Identities=8% Similarity=-0.171 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209 (471)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (471)
+++|...+++..+.+.. +...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555544444322 34444444444444455555555555444311 2223334444444444455555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 210 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEF 282 (471)
Q Consensus 210 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (471)
+..+... .+...+..++..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...+.++
T Consensus 397 ~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 397 ECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4444321 111122222222333444444444444443321 12 2222333444444444444444444443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=103.16 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=93.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 012111 191 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270 (471)
Q Consensus 191 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (471)
+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..+.+.|+.++.+-.+. .+-++.....+...+...+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 444444444444444444444333 333444444444444444444444444444433 1222222223333444444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 350 (471)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (471)
+.++|.++|+...+.. +.++.....+...|.-.++++.|.+.+.++.+.|.. ++..|+.+.-+|...++++-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 4444444444443332 233333333333344444444444444444444443 34444444444444444444444444
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 351 KMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 351 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
+....--.|+ ..+|..+.......|++..|.+.|+.....+.. +...+|.|.-.-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4433221121 223333333344444444444444444443333 33444444444444444444444444443
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-09 Score=95.90 Aligned_cols=361 Identities=11% Similarity=0.018 Sum_probs=248.1
Q ss_pred HHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHH
Q 012111 52 SKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131 (471)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (471)
.+.+.+.++++-..+.+...|.. |--+.+....+...|+|++.++.-..+.+.+ |.-+.++..-..++-+.|+++
T Consensus 126 f~~kkY~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhcccHHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHH
Confidence 45667778888888888766543 3344566666678899999999888888754 444567777777777778777
Q ss_pred HHHH----------------------HHHH---------HHhCC--CCCCHHHHHHHHHHHHhc--------C-------
Q 012111 132 QASL----------------------LFEV---------MLSDG--LKPSVDVYTALVSAYGQS--------G------- 163 (471)
Q Consensus 132 ~a~~----------------------~~~~---------m~~~~--~~~~~~~~~~li~~~~~~--------~------- 163 (471)
+|+. ++.. |.+.+ +.|+.....+....+... +
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 6642 1111 11111 234444444443333210 0
Q ss_pred -------------CHHHHHHHHHHhhcCCCCCC-----CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012111 164 -------------LLDEAFSTINDMKSVSDCKP-----DV------YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219 (471)
Q Consensus 164 -------------~~~~a~~~~~~~~~~~~~~~-----~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 219 (471)
.+..|.+.+.+-....-..+ |. .+.......+.-.|+.-.+..-|+..++.... +
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~ 359 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-F 359 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-c
Confidence 12222222222111000111 11 11111112233468888999999999887533 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 299 (471)
...|-.+..+|....+.++....|....+.+ +.+..+|..-.+.+.-.+++++|..-|++.+... +.+...|-.+.-
T Consensus 360 ~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 360 NSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCC 436 (606)
T ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHH
Confidence 3337778888999999999999999998775 3445568888888888899999999999998765 556667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHH--HHHHHHHHHH
Q 012111 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----MKPNSI--TYCSLVSAYS 372 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~--~~~~li~~~~ 372 (471)
+..+.+.+++++..|+...++ ++-.+..|+.....+...++++.|.+.|+..+... +..+.. +.-.++..-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 777899999999999999887 44467899999999999999999999999988652 111222 2223333323
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+ +++..|.+++....+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 516 k-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 8999999999999998877 677899999999999999999999998764
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.6e-10 Score=99.46 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 189 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
..+...+...|+++.|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333333333444444444443333322 112233333333334444444444444443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.6e-09 Score=94.55 Aligned_cols=382 Identities=12% Similarity=-0.000 Sum_probs=231.1
Q ss_pred ccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHH----HHHhC-----
Q 012111 73 YKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFE----VMLSD----- 143 (471)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~m~~~----- 143 (471)
.....|.+..-+.+.+.-.|++..|..+...-.-. .-+..+......++.+.+++++|..++. .+...
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 33466777777788888888899888877655322 4567777888889999999999999998 22110
Q ss_pred ----CCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHhhcC------------------------------
Q 012111 144 ----GLKPSVDV-----------YTALVSAYGQSGLLDEAFSTINDMKSV------------------------------ 178 (471)
Q Consensus 144 ----~~~~~~~~-----------~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------------ 178 (471)
-+.+|..- +-.-...|....+.++|...|.+....
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 00011100 000011223333444444444433320
Q ss_pred -------------------------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 012111 179 -------------------------------------SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221 (471)
Q Consensus 179 -------------------------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 221 (471)
.+..-+.........-|...+++.+..++.+.+.+.. ++...
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcc
Confidence 0001111112222222333445555555555554432 33444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 301 (471)
.+..-|.++...|+..+-..+=.++.+.. +....+|-++.--|...|+..+|.+.|.+....+ +.-...|-.+...|
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSF 356 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHh
Confidence 44444445555555555555555555442 3345566666666666677777777777665433 22234556666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 381 (471)
Q Consensus 302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 381 (471)
.-.|.-|+|..-+...-+.-.. ....+-.+.--|.+.++.+.|.+.|....... +-|+..++-+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHH
Confidence 6667777766666555442111 11111223334667788888888887776641 336777777777777788999999
Q ss_pred HHHHHHHh----CCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 382 SILRQVEN----SDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455 (471)
Q Consensus 382 ~~~~~~~~----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 455 (471)
.+|+.... .+.. --..+++.|..+|.+.+++++|+..+++.... .+-+..++.++.-.|...|+++.|...|.
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 99887652 1111 13456888999999999999999999998875 34588889899889999999999999999
Q ss_pred HHHHhhhcC
Q 012111 456 KMIAMKENS 464 (471)
Q Consensus 456 ~m~~~~~~~ 464 (471)
+.+.+.|..
T Consensus 514 KaL~l~p~n 522 (611)
T KOG1173|consen 514 KALALKPDN 522 (611)
T ss_pred HHHhcCCcc
Confidence 999888765
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=3.1e-11 Score=100.86 Aligned_cols=241 Identities=10% Similarity=0.009 Sum_probs=202.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 298 (471)
|..--+.+.++|.+.|.+.+|++.|+...++ .|-+.||..|-.+|.+..++..|+.++.+-.+. ++.++....-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 3344467889999999999999999998876 567778999999999999999999999998764 355555567788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
..+...++.++|.++++...+... .++.....+...|...++++-|+.+|+++.+.|+. ++..|+.+.-+|...++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 889999999999999999988633 36667777788899999999999999999999954 7889999999999999999
Q ss_pred HHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 379 KVDSILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (471)
-++.-|++....-..| -..+|-.+.......||+..|.+.|+-....+ .-+...++.|.-.-.+.|++++|+.+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999998887543333 34578888888889999999999999888753 33667888888888899999999999999
Q ss_pred HHHhhhcCCC
Q 012111 457 MIAMKENSGK 466 (471)
Q Consensus 457 m~~~~~~~~~ 466 (471)
+.+..|.--+
T Consensus 455 A~s~~P~m~E 464 (478)
T KOG1129|consen 455 AKSVMPDMAE 464 (478)
T ss_pred hhhhCccccc
Confidence 9988876443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=2e-11 Score=114.72 Aligned_cols=266 Identities=14% Similarity=0.117 Sum_probs=151.0
Q ss_pred ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 012111 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189 (471)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (471)
+.|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....|+.+.+. .|...+|.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt 87 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTYT 87 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHHH
Confidence 5666666666666666666666666 6666655555555566666666666555544332 45556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 012111 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269 (471)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (471)
.|+.+|...||... ++..++ ....+...+...|.......++..+.-..+..||..+ .+......
T Consensus 88 ~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHH
Confidence 66666666666544 111111 1122333444455554444554444333334444432 23333445
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 270 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349 (471)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 349 (471)
|-++.+++++..+-...-. ....+ +++-+.. +..-..++........-.|+..+|..++.+-...|+.+.|..++
T Consensus 153 glwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6666666666554322111 11111 1222221 22233333333322212477888888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 350 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
.+|++.|++.+..-|..|+-+ .++...+..+++.|...|+.|+..|+...+..+...|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888877777766666655 67777777888888888888888888777777766444
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=2.3e-09 Score=100.19 Aligned_cols=294 Identities=16% Similarity=0.132 Sum_probs=210.4
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-- 162 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 162 (471)
...+...|++++|++.++..... +......+......+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 34556889999999999887665 4556677888899999999999999999999998643 555555565655222
Q ss_pred ---CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 012111 163 ---GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238 (471)
Q Consensus 163 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 238 (471)
.+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|+|+ +|+.|-..|....+..-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 3577888999998763 24444433333223332233 34566777788888653 45566666665555555
Q ss_pred HHHHHHHHHHcC-------------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012111 239 MESSFSAMVESG-------------GCHPDI--FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303 (471)
Q Consensus 239 a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (471)
..+++....... .-.|+. .++..+...|...|++++|++++++.+... +..+..|..-.+.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 666666554321 013444 344566778889999999999999998864 4447788888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcC
Q 012111 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT--------YCSLVSAYSKAG 375 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g 375 (471)
.|++++|...++..+..... |...-+-.+..+.+.|++++|.+++....+.+..|.... ......+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887554 667777788889999999999999998887765442222 144567788999
Q ss_pred CHHHHHHHHHHHHh
Q 012111 376 LIMKVDSILRQVEN 389 (471)
Q Consensus 376 ~~~~a~~~~~~~~~ 389 (471)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99988887766543
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=4.5e-09 Score=98.29 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
+..+...|...|++++|++++++.+.. .|+ +..|..-.+.+-+.|++.+|.+.++.....+.. |..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 344456666667777777777766665 343 556666666667777777777777777666655 6666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH------HHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 408 QAGDVEKMGELFLTMKERHCVPDNI------TFA--TMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~~~p~~~------~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
++|++++|.+++..+...+..|... .|. -...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777776666554433221 221 223566667777777666655544
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=8.1e-08 Score=88.00 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (471)
|..+...+.-+.++|+.......|+.+...-++.-....|...+......+-++-+.+++++.++. ++..-+.-|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 455666677777888888888888887765433344556777777777788888888888887754 4445666677
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC---------------------------------------C--CCCCH--HHHHHHHHH
Q 012111 158 AYGQSGLLDEAFSTINDMKSVS---------------------------------------D--CKPDV--YTYSILIKS 194 (471)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~---------------------------------------~--~~~~~--~~~~~ll~~ 194 (471)
.++..+++++|-+.+..+.... | .-+|. ..|.+|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7777787777777666554310 0 01221 357777778
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 012111 195 CTKFHRFDLIEKILAEMSYL 214 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~ 214 (471)
|.+.|.++.|..++++....
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88888888888888777654
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=6.7e-10 Score=102.49 Aligned_cols=247 Identities=19% Similarity=0.229 Sum_probs=177.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 012111 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES----GG-CHPDIFTL-NSMISAYGNSGNIEKMEKWYNEFNLM----- 285 (471)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~----- 285 (471)
+.-..+...+...|...|+++.|+.+++...+. .| ..|...+. +.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334566677888899999999999988877654 11 13443333 34677888899999999999888542
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 012111 286 G--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-----FF-FPTV-VTYNIVIETFGKAGHIEKMEEYFKKMKHR- 355 (471)
Q Consensus 286 ~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 355 (471)
| .+.-..+++.|...|.+.|++++|...++...+- +. .|.+ ..++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1122346777888899999999888887765431 11 1222 24666777888999999999999876543
Q ss_pred --CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 356 --GMKP----NSITYCSLVSAYSKAGLIMKVDSILRQVENS----DV---ILDTPFFNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 356 --~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
-+.+ -..+++.|...|...|++++|.++++.++.. +- .-....++.|...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1122 2467899999999999999999999887632 11 112456788899999999999999999876
Q ss_pred Hh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 423 KE----RHC-VPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 423 ~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.. .|. .|+ ..+|..|...|...|+++.|.++.+.+......
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 53 222 233 467888999999999999999999998865543
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.7e-09 Score=94.49 Aligned_cols=286 Identities=12% Similarity=0.010 Sum_probs=224.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012111 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227 (471)
Q Consensus 148 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 227 (471)
+......-.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=..|.+.- |-.+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 44555555666778899999999999998744 5666666677778888998888777777787663 55688999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 012111 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307 (471)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (471)
..|...|+.++|.+.|.+....+ +.=...|..+...|.-.|..|+|+..|...-+.= +-..--+.-+.--|.+.+..
T Consensus 320 ~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 99999999999999999886543 2224579999999999999999999998775431 11111223344557788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----G--MKPNSITYCSLVSAYSKAGLIMKVD 381 (471)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~g~~~~a~ 381 (471)
+.|.+.|.+.....+ -|+..++-+.-.....+.+.+|..+|+..+.. + ..-...+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998877633 37777888777777789999999999987732 1 1124457889999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443 (471)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (471)
..++......+. +..++.++.-.|...|+++.|++.|.+..- +.|+..+...++..+..
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999999988776 899999999999999999999999999886 68988877777765543
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=9.4e-08 Score=87.70 Aligned_cols=389 Identities=11% Similarity=0.041 Sum_probs=241.3
Q ss_pred HHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHH
Q 012111 53 KILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQ 132 (471)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (471)
....+...+..++..+.. .+-+++++...=-.+...|+-++|.+........+ ..+...|+.+.-.+-..+++++
T Consensus 19 E~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHH
Confidence 344555666666666552 22334444433333456788888888888777654 5566778888877888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 133 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212 (471)
Q Consensus 133 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 212 (471)
|++.|......+.. |...|.-+.-.-++.++++.....-..+.+. .+-....|..+..+..-.|+...|..++++..
T Consensus 94 aiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 94 AIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876543 6777777766667777777777776666652 13334457777777778888888888888887
Q ss_pred HCC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 213 YLG-IECSAVTYNTII------DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285 (471)
Q Consensus 213 ~~g-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (471)
+.. -.|+...+.... ....+.|..+.|.+.+...... +......-..-...+.+.++.++|..++..+...
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 654 245655554332 2345567777777766555332 1222222334456677888888888888888765
Q ss_pred CCCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHHHHhC----------------------------------CCCCCHHHH
Q 012111 286 GVKADIQTLN-ILTKSYGRAGMYDKMR-SVMDFMQKR----------------------------------FFFPTVVTY 329 (471)
Q Consensus 286 ~~~~~~~~~~-~ll~~~~~~~~~~~a~-~~~~~~~~~----------------------------------~~~~~~~~~ 329 (471)
.||...|. .+..++.+..+.-++. .+|....+. |+++ ++
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 35544443 3444443333333333 444444332 2111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--------cC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 330 NIVIETFGKAGHIEKMEEYFKKMKH--------RG----------MKPNSI--TYCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~--------~~----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
..+...|-. ..++ .+++++.. .| -+|... ++-.++..+-+.|+++.|..+++..++
T Consensus 324 ~dl~SLyk~---p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 324 KDLRSLYKD---PEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhHHHHhc---hhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 122221111 1111 13333221 11 134443 344577788899999999999999888
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 390 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
+-+. -+..|..-.+.+...|++++|..++++..+.+ .||...-..-.....++.+.++|.++.....+.+.
T Consensus 400 HTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6433 34456666688889999999999999988753 35555544566667788899999888888877664
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.9e-12 Score=79.39 Aligned_cols=50 Identities=34% Similarity=0.515 Sum_probs=42.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443 (471)
Q Consensus 394 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (471)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.2e-10 Score=106.81 Aligned_cols=276 Identities=14% Similarity=0.158 Sum_probs=178.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012111 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214 (471)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 214 (471)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.- ...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC---------
Confidence 35566777888888888888888888888888887 7777766 455677778888888877777776655
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHH
Q 012111 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQT 293 (471)
Q Consensus 215 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 293 (471)
.|.+.+|..|..+|...|+... |+...+ ....+...+...|.-..-..++..+.- .+.-||..+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 6778888888888888888765 332221 122233444555555554555544321 123334332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
.+....-.|.++.+.+++..+...... .+... ++.-+.... .+++-..+-+.... .|++.+|..++.+..
T Consensus 145 ---~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 ---AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 333444556677777776554332111 11111 233332222 23333333332222 578888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 448 (471)
..|+++.|..++.+|.+.|+..+..-|..|+-+ .++...++.+++-|.+.|+.|+..|+.-.+-.+...|...
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 888888888888888888888777777777655 7788888888888888888888888887776666655433
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2e-07 Score=84.70 Aligned_cols=61 Identities=5% Similarity=-0.027 Sum_probs=37.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--------CC----CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVES--------GG----CHPDIFT-LNSMISAYGNSGNIEKMEKWYNEFNLMG 286 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~--------~~----~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (471)
....+...|++..|+++++...+. .. +.....+ -.-|.-++-..|+..+|..+|...+...
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 344566788899999888877211 10 0001111 1223445667889999999888887765
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=5.8e-09 Score=83.38 Aligned_cols=201 Identities=14% Similarity=0.023 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338 (471)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (471)
...|.-.|...|+...|..-+++..+.+ +.+..++..+...|.+.|+.+.|.+.|++....... +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445555666666666666666666554 445556666666666666666666666666654332 44556666666677
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 417 (471)
.|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+.++. .....-.+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 77777777777776654211 12456666666777777777777777777766554 44555666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+++.....+. ++..++...|+.--..|+.+.+.++-..+.+.-|.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 7777766544 67777777777777777777776666665555544
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=7.7e-12 Score=77.47 Aligned_cols=49 Identities=47% Similarity=0.784 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=3.3e-07 Score=84.17 Aligned_cols=375 Identities=10% Similarity=0.126 Sum_probs=206.1
Q ss_pred ccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccC-----ccCChhHHHHHHHHHhcCCCHHH---HHHHHHHHHhCC
Q 012111 73 YKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW-----YQARCQTFTKLMVMLGKCKQPEQ---ASLLFEVMLSDG 144 (471)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~~ 144 (471)
+-...|....+.+..+++.+++++|.+.+..+..+.. .+.+-..|..+-....+.-+.-. ...++..+..+
T Consensus 164 YLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r- 242 (835)
T KOG2047|consen 164 YLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR- 242 (835)
T ss_pred HHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc-
Confidence 3345566667778888888899998888887764421 13455566666666665543332 33344444432
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----------------------C
Q 012111 145 LKPS--VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH----------------------R 200 (471)
Q Consensus 145 ~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~ 200 (471)
-+| ...|++|.+-|++.|.+++|.++|++.... ..++.-|..+.++|+... +
T Consensus 243 -ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 243 -FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred -CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 233 346888899999999999999998887652 234444555555554321 1
Q ss_pred HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC------HHHHHHHH
Q 012111 201 FDLIEKILAEMSYLG-----------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD------IFTLNSMI 263 (471)
Q Consensus 201 ~~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~ 263 (471)
++....-|+.+...+ -+.+...|..-+. +..|+..+-...|.+..+. +.|. ...|..+.
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHH
Confidence 222333333333321 0112222222222 2235566666666666554 2221 23567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------CCC------
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----------FFP------ 324 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~------ 324 (471)
..|-..|+.+.|..+|++......+.- ..+|......-.+..+++.|.+++......- ..|
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 777777777777777777765443222 3455566666667777777777666543210 001
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHH
Q 012111 325 -TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCI 402 (471)
Q Consensus 325 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 402 (471)
+...|...++.--..|-++....+|+++.+..+. ++.+.......+-...-++++.+++++-+..-..|+. ..|+..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 2334555555555667777777777777765432 3333333344444555666666666665544333333 345555
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 012111 403 ISAYGQA---GDVEKMGELFLTMKERHCVPDNITFATMI--QAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 403 ~~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~ 458 (471)
+.-+.+. -..+.|..+|+++.+ |++|...-+..|+ ..--+.|....|..+++++.
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5544431 346666677766666 4555332221111 22233466666666666654
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=4.9e-07 Score=84.81 Aligned_cols=381 Identities=8% Similarity=0.013 Sum_probs=224.5
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS-VDVYTALV 156 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li 156 (471)
+..+-.+--.+...|++..+.+.|++...-- -...+.|+.+...+...|.-..|..+++........|+ ...+-..-
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3344455556667788888888888776532 34456677777777777777777777776554432232 23333333
Q ss_pred HHHHh-cCCHHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHH
Q 012111 157 SAYGQ-SGLLDEAFSTINDMKSVSDC---KPDVYTYSILIKSCTKF-----------HRFDLIEKILAEMSYLGIECSAV 221 (471)
Q Consensus 157 ~~~~~-~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~ 221 (471)
..|.+ .+.++++++.-.+.....+- ......|..+.-+|... ....++.+.+++..+.+ +-|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCch
Confidence 33332 34455544444443331010 12223333333333211 12345666666665554 22333
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-------------
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM-GV------------- 287 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~------------- 287 (471)
+...+.--|+..++.+.|.+..++..+.+ ...+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 33334444555666667766666666553 2445556666666666666666666666554332 10
Q ss_pred -----CCCHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHH----H----HhCC---------C
Q 012111 288 -----KADIQTLNILTKSYGRA-----------------------GMYDKMRSVMDF----M----QKRF---------F 322 (471)
Q Consensus 288 -----~~~~~~~~~ll~~~~~~-----------------------~~~~~a~~~~~~----~----~~~~---------~ 322 (471)
.....|...++..+-.. ++..++...... + ...+ .
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 00011222222222100 001111111000 0 0000 0
Q ss_pred --CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 012111 323 --FPT------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394 (471)
Q Consensus 323 --~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (471)
.|+ ...|......+.+.+..++|.-.+.+..... ......|......+...|..++|.+.|......++.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~- 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD- 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-
Confidence 111 1234455566778888888888887776642 345667777778888999999999999999988776
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 395 DTPFFNCIISAYGQAGDVEKMGE--LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
++.+..++..++.+.|+...|.. ++..+.+.+ +-+...|..+...+.+.|+.+.|.+.|.-...+.+..+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 77889999999999999888887 999998863 34788999999999999999999999999998887644
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=2.2e-07 Score=85.43 Aligned_cols=370 Identities=11% Similarity=0.137 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+...+-.+...+++...+++.+.+.+. ++...++.....-.+...|+-++|......-....+. +.+.|+++.-.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 3444555667889999999999999985 4667778888888888999999999999888876554 888999999999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 239 (471)
-...++++|+..|....... +-|...+.-+.-.-++.++++.....-..+.+.. +-....|..+..++.-.|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998732 4566677777666678888888888887777653 33456677888888889999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMI------SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 313 (471)
..+++...+.....|+...|.... ......|..+.|.+.+..-... +.-....-..-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 999999977653356666655443 3456678888888887765432 111222234445678899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHH-HHHHH----------------------------------HHHcCC
Q 012111 314 MDFMQKRFFFPTVVTYNIVI-ETFGKAGHIEKME-EYFKK----------------------------------MKHRGM 357 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~----------------------------------m~~~~~ 357 (471)
+..+... .||...|...+ .++.+--+.-++. .+|.. +.+.|+
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9999887 45666555544 3332222222222 33333 333333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCcCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 012111 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSD----------VILDTPFF--NCIISAYGQAGDVEKMGELFLT 421 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 421 (471)
++ ++..+...|-.-...+-..++.-.+. ..| -.|....| -.++..+-+.|+++.|..+++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 32 12222222222111111111111111 111 13444444 4567788899999999999999
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 422 MKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 422 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..+. .|+.. .|..-.+.+...|+.++|..+++++.+++-.
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 9975 66654 4555568899999999999999999887754
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.3e-08 Score=80.85 Aligned_cols=294 Identities=12% Similarity=0.087 Sum_probs=209.7
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA-LV 156 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li 156 (471)
......++..+++..++.+|++++..-.++. +.+......+..+|....++..|...++++-.. .|...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 3456677888889999999999999988875 558888999999999999999999999999875 556555543 34
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
..+.+.+.+.+|+.+...|.. .++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|
T Consensus 86 QSLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 567788999999999998875 2333322222222 345678888888888877544 5666666777778999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHH---------
Q 012111 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-------------DIQ--------- 292 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------- 292 (471)
+++.|.+-|+...+-+|..|-. .|+..+. ..+.|+++.|++...+++++|++. |+.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpll-AYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLL-AYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchh-HHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 9999999999999998887754 6766554 457889999999999998876532 211
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012111 293 ------TLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365 (471)
Q Consensus 293 ------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 365 (471)
.+|.-...+.+.|+++.|.+-+-.|..+. ...|++|...+.-.- ..+++.+..+-+.-+...+. -...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 12323334567889999988888775432 334666655543221 23445555555555555432 3467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 012111 366 SLVSAYSKAGLIMKVDSILRQ 386 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~ 386 (471)
.++-.||++.-++.|-+++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888888777654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.4e-08 Score=89.83 Aligned_cols=229 Identities=9% Similarity=-0.028 Sum_probs=155.3
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 197 KFHRFDLIEKILAEMSYLG-IEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 273 (471)
..+..+.++.-+.+++... ..| ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence 3456677888888887542 122 24567777888889999999999999988764 456788899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (471)
+|...|+...+.. +-+..++..+..++...|++++|...|+...+... +..........+...++.++|...+.+..
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999988754 44567778888888889999999999998887643 32211222223445678999999997655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS---DVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 427 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 427 (471)
... .|+...+ . ......|+...+ +.+..+.+. .+. .....|..+...+...|++++|+..|++..+.+
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~- 266 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN- 266 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 432 3332221 2 223335555444 344444421 111 123578888889999999999999999988753
Q ss_pred CCCHHHHHH
Q 012111 428 VPDNITFAT 436 (471)
Q Consensus 428 ~p~~~~~~~ 436 (471)
.||..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 345555544
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=2.7e-07 Score=84.85 Aligned_cols=62 Identities=19% Similarity=0.050 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERHCV-------P-DNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
....++...|+.+.|..+++.+...... . ..........++...|++++|.+.+...+....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4555666777777777777776542111 0 111111222345677888888888887776654
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=2.1e-08 Score=92.81 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKR---FFFP----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-----G-MKP- 359 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p- 359 (471)
++.+...++..+++++|..++....+. -+.+ -..+++.|...|...|++++|.+++++.+.. | ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344445555556666665555433221 1111 2346777777777777777777777776543 1 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 360 NSITYCSLVSAYSKAGLIMKVDSILRQVEN----SDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
....++.+...|.+.+.+++|.++|.+... .|+. -...+|..|...|...|+++.|+++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 244567777777777777777777765432 2222 134567778888888888888888777655
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=4.4e-08 Score=86.76 Aligned_cols=195 Identities=11% Similarity=-0.004 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 012111 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267 (471)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (471)
|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...|++..+.. +.+..++..+..++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 4444444555555555555555555443 2344555555555555555555555555555432 223344455555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 347 (471)
..|++++|.+.|+...+.. |+..........+...++.++|...|....... .++...+ .+. ....|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-H
Confidence 5555555555555554432 221111111122233445555555554433221 1111111 111 1223333222 2
Q ss_pred HHHHHHHc---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 348 YFKKMKHR---GM--KP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 348 ~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
.+..+.+. .+ .| ....|..+...+...|++++|...|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22222211 00 01 224566666666666666666666666666543
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-07 Score=81.88 Aligned_cols=303 Identities=11% Similarity=0.039 Sum_probs=195.0
Q ss_pred cCChhHHHHHHHHHhcC--CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHH-
Q 012111 111 QARCQTFTKLMVMLGKC--KQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY- 186 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 186 (471)
+|...+...-+.+++.. ++-..|...+-.+... -++-++.....+..++...|+.++|+..|++.... .|+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~ 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVE 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---Chhhhh
Confidence 44444444444444332 3333344433333322 24556777888888888888888888888887652 33332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 012111 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266 (471)
Q Consensus 187 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (471)
......-.+.+.|+.+....+...+.... .-+...|..-........+++.|+.+-++.++.+ +.+...|..-...+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL 344 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLL 344 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHH
Confidence 22333334557788888777777776542 1233334444445556678888888888877653 44455555556677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHH
Q 012111 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-ETFGK-AGHIEK 344 (471)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~ 344 (471)
...|++++|.-.|+..+... +.+...|..|+..|...|.+.+|.-+-+...+. +..+..+...+. ..+.- ..--++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 78888888888888877643 567788888888888888888887766655443 222444444442 22222 223467
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 345 MEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 345 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
|.++++.-... .|+ ....+.+...|...|..+.+..+++..... .||....+.|...+...+.+++|.+.|....
T Consensus 423 AKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 78888776654 554 446677777888888888888888876653 4677788888888888888888888888777
Q ss_pred hC
Q 012111 424 ER 425 (471)
Q Consensus 424 ~~ 425 (471)
..
T Consensus 499 r~ 500 (564)
T KOG1174|consen 499 RQ 500 (564)
T ss_pred hc
Confidence 63
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=3e-07 Score=84.59 Aligned_cols=306 Identities=10% Similarity=0.038 Sum_probs=150.3
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHH-
Q 012111 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL-KPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI- 190 (471)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 190 (471)
...|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+++++..+. .+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 34455555555555666665555555443321 1121 11222233445566777777777766652 1223333331
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 012111 191 --LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268 (471)
Q Consensus 191 --ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (471)
........+..+.+.+.++... ...+........+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 1111112333444444444311 1112223344455566667777777777777776653 3445556666777777
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 012111 269 SGNIEKMEKWYNEFNLMGV-KADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVVTY-N--IVIETFGKAGH 341 (471)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~ 341 (471)
.|++++|..++++...... .++. ..|..+...+...|++++|..+++....... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 7777777777777655321 1222 2344566677777777777777777643322 1111111 1 22222233333
Q ss_pred HHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------c--CHHHHHHHHHHHHhc
Q 012111 342 IEKMEEY--FKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI------L--DTPFFNCIISAYGQA 409 (471)
Q Consensus 342 ~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 409 (471)
...+.++ +........ ............++...|+.+.|..+++.+...... . .....-....++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 2222222 111111100 111122234566677778888888888777642211 0 111122222345577
Q ss_pred CCHHHHHHHHHHHHh
Q 012111 410 GDVEKMGELFLTMKE 424 (471)
Q Consensus 410 g~~~~a~~~~~~~~~ 424 (471)
|+.++|.+++.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887765
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.7e-07 Score=84.37 Aligned_cols=365 Identities=13% Similarity=0.096 Sum_probs=239.7
Q ss_pred HHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 86 DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL 165 (471)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 165 (471)
..++..|+++.|+..|..+.... |+|...|..-..+|++.|++++|.+=-.+-++.+.. -...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 34568999999999999999876 778889999999999999999998877777766432 467899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHHcc---
Q 012111 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL------AEMSYL---GIECSAVTYNTIIDGYGKA--- 233 (471)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------~~~~~~---g~~~~~~~~~~l~~~~~~~--- 233 (471)
++|+.-|.+-.+. .+.|...++.+..++... .. +.+.| ..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999988763 245566677777766211 00 01111 111000 0000111222222222111
Q ss_pred -------CCHHHHHHHHHHH-----HHcC------CCCC----------------------CHHHHHHHHHHHHhcCCHH
Q 012111 234 -------KKFEEMESSFSAM-----VESG------GCHP----------------------DIFTLNSMISAYGNSGNIE 273 (471)
Q Consensus 234 -------~~~~~a~~~~~~~-----~~~~------~~~~----------------------~~~~~~~l~~~~~~~~~~~ 273 (471)
..+..+...+... ...+ +..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0111111111100 0000 0011 1123455777788888999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHhcCCHHHHH
Q 012111 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-------ETFGKAGHIEKME 346 (471)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~a~ 346 (471)
.|.+.+....... -+..-++....+|...|.+..+...-+...+.|.. ...-|+.+. .+|.+.++++.+.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999887764 56666777788888888888887777766665543 222333333 3555567788888
Q ss_pred HHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 012111 347 EYFKKMKHRGMKPNSITY-------------------------CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401 (471)
Q Consensus 347 ~~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 401 (471)
..|.+.......|+...= ..=...+.+.|++..|...|.++++.++. |...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHH
Confidence 888877655434333221 11133466789999999999999988866 8889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 402 IISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
-.-+|.+.|.+..|++-.+...+. .|+ ...|..=..++....+++.|.+.|++.++.+|..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999999999999999988888775 343 3445445566667778999999999999888764
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.2e-07 Score=79.17 Aligned_cols=359 Identities=11% Similarity=0.049 Sum_probs=211.0
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC
Q 012111 49 KDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK 128 (471)
Q Consensus 49 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (471)
-.-.+++.+++++......+. ......+....+.-...-.|.+.+|..+-..+. .++-.-..++...-+.+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~---~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMN---KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhc---cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhC
Confidence 334667777777766665544 222333344444444456788999888766553 33344455666667778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 012111 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 207 (471)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~ 207 (471)
+-++-..+.+.+.+. .+---+|.......-.+.+|+++|.++... .|+-...|..+.. |.+..-++.+.++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 888777777766542 233344555544455789999999999862 5666666665554 5677888888899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-------------------------CCCC-----HH
Q 012111 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-------------------------CHPD-----IF 257 (471)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------~~~~-----~~ 257 (471)
++-..+. ++.+....|.......+.-+-..|+.-...+.+... +-|. ..
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 8887765 233445555444433332111111111111111100 0010 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-----------------------------------------HH
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL-----------------------------------------NI 296 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------------------------------~~ 296 (471)
.-..|+--|.+.+++.+|..+.+++.- ..|-.... ..
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 122334446677777777776665431 11111111 22
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcC
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC-SLVSAYSKAG 375 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g 375 (471)
+..++.-..++|+++..+..+..--...|...|| +.++++..|++.+|.++|-++....++ |..+|. .|.++|.+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 3333444455666666666666654444555444 678889999999999999776654444 455565 5668889999
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 012111 376 LIMKVDSILRQVENSDVILDTPFF-NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 434 (471)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 434 (471)
.++.|++++-.+... .+..+. ..+..-|.+++.+--|.+.|+.+... .|++..|
T Consensus 443 kP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 999998877655432 233333 34455688889988888888888764 4665544
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=4.7e-08 Score=78.34 Aligned_cols=192 Identities=14% Similarity=0.026 Sum_probs=115.9
Q ss_pred HHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 87 EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166 (471)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 166 (471)
.+...|++..|.+-++++.+.+ |.+..++..+...|-+.|..+.|.+.|+........ +-.+.|.....+|..|+++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChH
Confidence 3456667777777777776664 455566666666666777777777777666665332 4556666666666666777
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
+|...|++......+.--..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++..|...++..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 7777766666533233334456666666666666666666666666553 223445555666666666666666666666
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
...+ .++..+.-..|..-...|+.+.+.++=.++..
T Consensus 200 ~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 200 QQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred Hhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5543 25555555556666666666665555544443
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=6.5e-07 Score=93.17 Aligned_cols=344 Identities=9% Similarity=-0.005 Sum_probs=216.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-----CCCH--HHHHHHHHH
Q 012111 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-----KPDV--YTYSILIKS 194 (471)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~ll~~ 194 (471)
..+...|+++.+..+++.+.......+..........+...|+++++..++......... .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556777777777766532111112223334455566789999999988876542111 1111 122223344
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHH
Q 012111 195 CTKFHRFDLIEKILAEMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESGG----CHPDIFTLNSMISAY 266 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 266 (471)
+...|+++.|...+++....-...+. ...+.+...+...|++++|...+++...... .......+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56789999999999988763111121 2445566677889999999999988764321 111123455667778
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 012111 267 GNSGNIEKMEKWYNEFNLM----GVK--A-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFP--TVVTYNIVIET 335 (471)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~ 335 (471)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876542 211 1 22334555667778899999999988765421 112 23344455667
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRG--MKPNSI--T-Y-CSLVSAYSKAGLIMKVDSILRQVENSDVILD---TPFFNCIISAY 406 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 406 (471)
+...|++++|.+.+....... ...... . . ...+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999998875431 111111 1 0 1122444567899999999877654322111 11234667788
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 407 GQAGDVEKMGELFLTMKER----HCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++++.....+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8999999999999987653 33322 24555666888999999999999999998775544
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=1.5e-06 Score=73.94 Aligned_cols=308 Identities=12% Similarity=-0.001 Sum_probs=177.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 012111 83 EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY-TALVSAYGQ 161 (471)
Q Consensus 83 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~ 161 (471)
++=..+...|++.+|+.-|..+.+.+ |.+-.++..-...|...|+...|+.=+...++. +||...- ..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 44556778899999999999998764 455566667777888899999999888888876 6664332 223346778
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHH----H------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 012111 162 SGLLDEAFSTINDMKSVSDCKPDVYT----Y------------SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225 (471)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~----~------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 225 (471)
.|.++.|..=|+.+... .|+..+ + ...+..+...|+...|+..+..+++.. +.+...|..
T Consensus 119 ~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred cccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 99999999999998873 232211 1 111222333344444444444444432 334444444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 305 (471)
-..+|...|++..|+.=++...+.. ..+..++-.+-..+...|+.+.++...++..+. .||...+-. --.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~------~YK 264 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP------FYK 264 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH------HHH
Confidence 4444445555444444444333221 223333333444444444444444444444332 233221110 001
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 012111 306 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI---TYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~ 382 (471)
.+.+..+.++.| ......+++.++++..+...+........ .+..+-.++...|++.+|++
T Consensus 265 klkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 265 KLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 111111111111 22344567777777777776653221122 33445566777788888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
...++.+..+. |..++..-..+|.-...+++|+.-|+...+.
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888876544 5777777778888888888888888888774
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=4.7e-07 Score=75.39 Aligned_cols=293 Identities=10% Similarity=0.004 Sum_probs=208.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHH-HHHH
Q 012111 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI-LIKS 194 (471)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~ 194 (471)
-++..+..+.+..+++.|++++..-.++..+ +......|..+|....++..|-+.|+++.. ..|...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence 4667777788899999999999988887433 778889999999999999999999999976 2566555543 2345
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTII--DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (471)
+.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++.... -+..+.+...-...+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccH
Confidence 67889999999999988753 2222222222 2334578888888888877432 2445555566667789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------------CH--------HHHHH
Q 012111 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP-------------TV--------VTYNI 331 (471)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~--------~~~~~ 331 (471)
++|.+-|+...+-+--.....|+..+. ..+.|+.+.|.+...++.++|+.. |+ ..-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999999877654555667776554 456789999999999999887431 21 12233
Q ss_pred HHHH-------HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012111 332 VIET-------FGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403 (471)
Q Consensus 332 li~~-------~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (471)
++.+ +.+.|+++.|.+.+-+|... ....|+.|...+.-.- -.+++....+-++-+...++- ...+|..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 3333 35678899999888888643 2345777776654332 234555566666666666664 567888888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 012111 404 SAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~ 422 (471)
-.||+..-++.|.+++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 9999999999998887653
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=3.9e-08 Score=85.78 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 012111 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV-EKMGELF 419 (471)
Q Consensus 341 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 419 (471)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554332 3344445555555555555555555555554444333 344444444444444444 3344444
Q ss_pred HHHHh
Q 012111 420 LTMKE 424 (471)
Q Consensus 420 ~~~~~ 424 (471)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=2.7e-08 Score=86.81 Aligned_cols=251 Identities=13% Similarity=0.106 Sum_probs=159.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (471)
-.|++..++.-.+ .....-.........+.+++...|+++.++ .++.+. ..|.......+...+...++-+.+.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHH
Confidence 3466666664444 222211122344455667777777766543 333222 2555555555555444434555555
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 277 KWYNEFNLMGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 277 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
.-+++........+ ..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555443332322 223333334556678888888877642 35677778889999999999999999999864
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 356 GMKPNSITYCSLVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 431 (471)
..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +-++
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 344 344445554433 34699999999998765 45688999999999999999999999999987653 3367
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhhcC
Q 012111 432 ITFATMIQAYNALGMT-EAAQNLENKMIAMKENS 464 (471)
Q Consensus 432 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~~ 464 (471)
.++..++.+....|+. +.+.+++..+....|..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 7888888888888987 67888998888777653
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=6.1e-06 Score=79.93 Aligned_cols=307 Identities=11% Similarity=0.119 Sum_probs=150.5
Q ss_pred hhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccC-ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 012111 67 KVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL 145 (471)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 145 (471)
+.+..-....+|+.+...+.++...+-+.+-+++++.+.-... +..+...-+.|+-...+ -+...+.+..+++.....
T Consensus 973 Vv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa 1051 (1666)
T KOG0985|consen 973 VVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA 1051 (1666)
T ss_pred HHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc
Confidence 3333334455678888888888888889999999998875431 22222333333333333 344555566665544321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 012111 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 225 (471)
Q Consensus 146 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 225 (471)
|+ +...+...+-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++.. .+.+|..
T Consensus 1052 -~~------ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsq 1109 (1666)
T KOG0985|consen 1052 -PD------IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQ 1109 (1666)
T ss_pred -hh------HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHH
Confidence 12 2233444555666666666543 233333333331 233333333332221 2334555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK----------------- 288 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 288 (471)
+..+-.+.|...+|.+-|-+. .|...|..++....+.|.+++..+++....+....
T Consensus 1110 lakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH
Confidence 555555555555554443222 12334555555555555555555554444433323
Q ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012111 289 ---------ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359 (471)
Q Consensus 289 ---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 359 (471)
|+......+.+-|...+.++.|.-+|. ++..|..|...+...|++..|.+.-++. -
T Consensus 1183 ~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------n 1247 (1666)
T KOG0985|consen 1183 TELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------N 1247 (1666)
T ss_pred HHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------c
Confidence 333333333444444444444443333 2333444555555555555554443322 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
+..||..+-.+|...+.+.-| +|-..++.....-...|+.-|-..|-+++.+.+++...
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 344555555555544443322 23333334444556667777777777777777666554
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=4.2e-07 Score=84.80 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=183.7
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295 (471)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (471)
++|-...-..+...+.+.|-...|..+|++.. .|...+.+|+..|+..+|..+..+..+ -+||...|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 45555566677888999999999999998873 577788999999999999999988776 489999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
.+.+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9999888888889999998876543 11222222344789999999998877653 345678888888889999
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 455 (471)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 455 (471)
+++.|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999999998887766 78899999999999999999999999998876 4466677777777889999999999999
Q ss_pred HHHHhhhcC
Q 012111 456 KMIAMKENS 464 (471)
Q Consensus 456 ~m~~~~~~~ 464 (471)
++.......
T Consensus 612 rll~~~~~~ 620 (777)
T KOG1128|consen 612 RLLDLRKKY 620 (777)
T ss_pred HHHHhhhhc
Confidence 988776543
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.2e-07 Score=85.99 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=167.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 012111 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307 (471)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (471)
.-+.+.|++.+|.-.|+..+++. +-+...|..|.......++-..|+..+.+..+.+ +-+......|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567788888888888887764 5567788888888888888888888888887765 56677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcC
Q 012111 308 DKMRSVMDFMQKRFFFPTVVTYNIVI-----------ETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g 375 (471)
..|...++......++ |..+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888777654211 00000 01111122334444444443 4444577788888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 012111 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTEAAQNLE 454 (471)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 454 (471)
++++|.+.|+.+....+. |..+||.|...++...+..+|+..|+++++ ++|+. .+...|.-+|+..|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999888776 888999999999999999999999999988 57764 45556777889999999999988
Q ss_pred HHHHHhhhcC
Q 012111 455 NKMIAMKENS 464 (471)
Q Consensus 455 ~~m~~~~~~~ 464 (471)
=+++.+..+.
T Consensus 522 L~AL~mq~ks 531 (579)
T KOG1125|consen 522 LEALSMQRKS 531 (579)
T ss_pred HHHHHhhhcc
Confidence 8888877763
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3e-05 Score=71.04 Aligned_cols=359 Identities=13% Similarity=0.075 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--H
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL--V 156 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--i 156 (471)
..+..-+......|++++|++....+.... +.+..++..-+.++.+.+++++|+.+.+.-.. ..+++.. =
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHH
Confidence 355666888888999999999999999875 77788899999999999999999966654321 1122222 2
Q ss_pred HH--HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 012111 157 SA--YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-AVTYNTIIDGYGKA 233 (471)
Q Consensus 157 ~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~ 233 (471)
.+ +.+.+..++|+..++-.. +.+..+...-...+.+.+++++|.++|+.+.+.+.+-- ...-..++.+-
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--- 156 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--- 156 (652)
T ss_pred HHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---
Confidence 33 447899999999998333 23444666667788999999999999999988753311 11111122111
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH------H-HHHH
Q 012111 234 KKFEEMESSFSAMVESGGCHPDIFTLNSM---ISAYGNSGNIEKMEKWYNEFNLMG-------VKADI------Q-TLNI 296 (471)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~ 296 (471)
-...+. +.+.. ...| ..+|..+ .-.+...|++.+|+++++...+.+ -..+. . .-..
T Consensus 157 -a~l~~~-~~q~v----~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 157 -AALQVQ-LLQSV----PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred -HhhhHH-HHHhc----cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 111111 12222 1223 2244443 345667999999999999883221 01111 1 1233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHH----------------------------------------
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT----YNIV---------------------------------------- 332 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------------------------------------- 332 (471)
+.-++...|+.++|..++..+.+.... |... -|.|
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455667889999999999888776432 1100 0000
Q ss_pred -------HHHHHhc--------------------------------CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 012111 333 -------IETFGKA--------------------------------GHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAY 371 (471)
Q Consensus 333 -------i~~~~~~--------------------------------g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 371 (471)
+..|... .....+.+++...-+. .|. ..+.-..+...
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHH
Confidence 0111000 0112222222222222 222 33445556667
Q ss_pred HhcCCHHHHHHHHH--------HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHH----
Q 012111 372 SKAGLIMKVDSILR--------QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNITFATM---- 437 (471)
Q Consensus 372 ~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l---- 437 (471)
...|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..++++.... .-.+.......+
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 78888888888888 555554443 34455666677777766677777666531 011222333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 438 IQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
...-.+.|+.++|..+++++.+..|+..
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 3333567999999999999998777643
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.8e-05 Score=82.49 Aligned_cols=337 Identities=9% Similarity=0.006 Sum_probs=211.4
Q ss_pred HHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 012111 87 EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL------KPS--VDVYTALVSA 158 (471)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------~~~--~~~~~~li~~ 158 (471)
.+...|++..+...++.+.... ...+..........+...|+++++..+++.....-. .+. ......+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567776666666553211 112222334445556678999999999987754311 111 1222233345
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSCTKFHRFDLIEKILAEMSYLGI---EC--SAVTYNTIIDG 229 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~l~~~ 229 (471)
+...|++++|...++....... ..+ ....+.+...+...|+++.|...+++.....- .+ ...++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 6678999999999998765211 112 12345566667789999999999988764311 11 12345566777
Q ss_pred HHccCCHHHHHHHHHHHHHc---CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHH
Q 012111 230 YGKAKKFEEMESSFSAMVES---GGCH--P-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKA--DIQTLNILTK 299 (471)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~ 299 (471)
+...|+++.|...+++..+. .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876542 1111 1 22334556667778899999999998875431 112 2334555667
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 012111 300 SYGRAGMYDKMRSVMDFMQKRFFFP-TVVTY-----NIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSA 370 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 370 (471)
.+...|+++.|...+.......... ....+ ...+..+...|+.+.|..++........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999988775421110 11111 1122445568899999999877554221111 1123456777
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 371 YSKAGLIMKVDSILRQVENS----DVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
+...|+.++|...+++.... +... ...++..+..++.+.|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999887642 3222 2245666778889999999999999998865
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=2.5e-07 Score=84.02 Aligned_cols=217 Identities=16% Similarity=0.153 Sum_probs=98.9
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 168 (471)
.+.|++.+|.-.|+.+.+++ |.+..+|..|...-...++-..|+..+++..+.... +..+.-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 45555666666666655554 455556666666555555555666666655554322 445555555555555555556
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 012111 169 FSTINDMKSVSDCKPDVYTYSILI-------KSCTKFHRFDLIEKILAEMS-YLGIECSAVTYNTIIDGYGKAKKFEEME 240 (471)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (471)
+..+++..... ++-...-..-. ..+.....+....++|-++. ..+..+|+.++..|.-.|.-.|+++.|.
T Consensus 373 l~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 55555554311 00000000000 00111111222333333322 2222344444445555555555555555
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 012111 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD-IQTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
..|+..+... +-|...||.|...++...+.++|+..|.+..+. .|+ +.+...|.-.|...|.+++|...|
T Consensus 451 Dcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 451 DCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 5555554432 334445555555555555555555555555443 222 222233334444455555554444
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=3e-05 Score=73.28 Aligned_cols=352 Identities=14% Similarity=0.151 Sum_probs=237.1
Q ss_pred ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 012111 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189 (471)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (471)
+.-+...|..+.-++...|+++.+.+.|++....-+. ..+.|+.+...|...|.-..|+.+++.-.....-++++..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4557788888888999999999999999998754333 677899999999999999999999988765333233444444
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHcCCCC
Q 012111 190 ILIKSCT-KFHRFDLIEKILAEMSYL--GI--ECSAVTYNTIIDGYGKA-----------KKFEEMESSFSAMVESGGCH 253 (471)
Q Consensus 190 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 253 (471)
..-..|. +.+..++++.+-.+.... |. ......|..+.-+|... ....++++.+++..+.++..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 346667776666666551 11 12234444444444321 23567888899998887667
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------
Q 012111 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---------- 323 (471)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------- 323 (471)
|++..|..+ -|+-.++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+.-..
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 766555444 45677899999999999998866888999999999999999999999999876543111
Q ss_pred ---------CCHHHHHHHHHHHHh---------cC--------------CHHHHHHHHHHH--------HHcC-------
Q 012111 324 ---------PTVVTYNIVIETFGK---------AG--------------HIEKMEEYFKKM--------KHRG------- 356 (471)
Q Consensus 324 ---------~~~~~~~~li~~~~~---------~g--------------~~~~a~~~~~~m--------~~~~------- 356 (471)
--..|...++..+-. .| +..++......+ ...|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222222210 00 111111111111 0001
Q ss_pred --CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 357 --MK--PN------SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426 (471)
Q Consensus 357 --~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 426 (471)
.. |+ ...|......+.+.+..++|...+.+.....+. ....|......+...|.+.+|.+.|.....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 01 11 122345556677888888998888888776544 677777777888899999999999998887
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhhhcCCCC
Q 012111 427 CVP-DNITFATMIQAYNALGMTEAAQN--LENKMIAMKENSGKK 467 (471)
Q Consensus 427 ~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~ 467 (471)
+.| ++....++...+.+.|+...|.. ++.++.+.+|.+.+.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 456 45677888899999999888877 999999999876543
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=3.9e-06 Score=83.89 Aligned_cols=237 Identities=11% Similarity=0.099 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 012111 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP---DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 293 (471)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 293 (471)
+-+...|-..|......++.++|.+++++.+..-++.- -...|.++++.-.-.|.-+...++|+++.+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 44577888889999999999999999999876532221 13467777777777788899999999988742 33457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSA 370 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 370 (471)
|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-+.|..++.+..+. -|. .......+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 88999999999999999999999998743 47788999999999999999999999998875 343 3345556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 012111 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN--ITFATMIQAYNALGMTE 448 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~ 448 (471)
-.+.|+.+++..+|+......++ -...|+.+++.-.+.|+.+.+.++|++....++.|-. ..|...+..--..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 77889999999999999887766 7889999999999999999999999999998887753 45666666666667765
Q ss_pred HHHHHHHHHHH
Q 012111 449 AAQNLENKMIA 459 (471)
Q Consensus 449 ~A~~~~~~m~~ 459 (471)
.+..+=.++.+
T Consensus 1689 ~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1689 NVEYVKARAKE 1699 (1710)
T ss_pred hHHHHHHHHHH
Confidence 55544444443
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=3.3e-05 Score=66.05 Aligned_cols=281 Identities=12% Similarity=0.033 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChh-HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHH-----
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQ-TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS--VDV----- 151 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~----- 151 (471)
.+....-.+...|+-+.|+.-|+.+.+. +||.. +-..-...+.+.|.+++|..=|+..+.....-. ...
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~ 150 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA 150 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3344445567789999999999999885 56653 344556678899999999999999998743211 111
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 012111 152 -------YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224 (471)
Q Consensus 152 -------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 224 (471)
....+..+...|+...|++....+.+. .+.|...|..-..+|...|++..|+.-++...+.. ..+..++.
T Consensus 151 ~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~y 227 (504)
T KOG0624|consen 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHY 227 (504)
T ss_pred hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHH
Confidence 122344566789999999999999873 36788899999999999999999998888887664 44677777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012111 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304 (471)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 304 (471)
.+-..+...|+.+.++...++..+ +.||...+-..- .......+.++.|. .....
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~Y------KklkKv~K~les~e----------------~~ie~ 282 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFY------KKLKKVVKSLESAE----------------QAIEE 282 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHH------HHHHHHHHHHHHHH----------------HHHhh
Confidence 888889999999999999999877 466654332211 11222333333332 23455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 012111 305 GMYDKMRSVMDFMQKRFFFPTVV---TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKV 380 (471)
Q Consensus 305 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 380 (471)
++|.++..-.+...+........ .+..+-.++...|++.+|++.-.+.... .|+ ..++.--..+|.-...++.|
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHH
Confidence 67777777777777764432222 3444556677789999999999888874 554 88888889999999999999
Q ss_pred HHHHHHHHhCCCC
Q 012111 381 DSILRQVENSDVI 393 (471)
Q Consensus 381 ~~~~~~~~~~~~~ 393 (471)
+.-|+...+.+..
T Consensus 361 I~dye~A~e~n~s 373 (504)
T KOG0624|consen 361 IHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999987654
No 101
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=1.1e-05 Score=71.44 Aligned_cols=137 Identities=7% Similarity=-0.074 Sum_probs=68.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 012111 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270 (471)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (471)
-..+...+..++|+.+.+++++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcC
Confidence 333444556666666666666543 223444544444444445 4566666666665543 334444554444444444
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 271 NI--EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333 (471)
Q Consensus 271 ~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 333 (471)
+. ++++.+++++.+.+ +-+..+|+...-++...|++++++..++++.+.++. +...|+...
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 32 44555555555443 344555555555555555555555555555554333 334444433
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=5.1e-06 Score=78.74 Aligned_cols=317 Identities=12% Similarity=0.116 Sum_probs=188.4
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC-C--------CCCCHHHHHHHHHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-G--------LKPSVDVYTALVSAY 159 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~li~~~ 159 (471)
+..|+.+.|.+-.+.+.. ...|..+..+|.+..+.+-|.-.+..|... | ..++ ..-....-..
T Consensus 739 vtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 456888888887776653 358999999999999998888777776532 1 1121 2222233334
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 239 (471)
...|.+++|..+|.+-++ |..|=+.|...|.+++|.++-+.--+.. -..||......+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 578899999999998876 4456667778899999998876533322 235666677777778889999
Q ss_pred HHHHHHHH----------HcC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 240 ESSFSAMV----------ESG--------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 301 (471)
Q Consensus 240 ~~~~~~~~----------~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 301 (471)
++.|++.. ... ....|...|......+...|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 88887541 110 0012333444444445556666666666655432 34455555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 012111 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL----- 376 (471)
Q Consensus 302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----- 376 (471)
|-.|+.++|-++-++- -|....-.+...|-..|++.+|..+|.+... +...|+.|-.++-
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 6666666666665432 2444555677778888888888887776543 2223332222221
Q ss_pred ----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhCCCC--CCHHHHHH
Q 012111 377 ----------IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT--------MKERHCV--PDNITFAT 436 (471)
Q Consensus 377 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~~~~--p~~~~~~~ 436 (471)
.-.|-.+|++. |. -+...+..|-++|.+.+|+++--+ ++..++. .|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 11222222221 11 122334567777777777765321 2222233 35666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 012111 437 MIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
-...+....++++|..++-...
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 6667777777887776665443
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=8.2e-06 Score=81.74 Aligned_cols=227 Identities=8% Similarity=0.052 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 012111 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD---VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 224 (471)
Q Consensus 148 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 224 (471)
+...|-..|..+...++.++|.+++++.....++.-. ...|.++++.-...|.-+...++|+++.+.- -...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777778888888888777653222111 2346666666666677777778888777652 2345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Q 012111 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGR 303 (471)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~ 303 (471)
.|...|.+.+++++|.++++.|.+..+ .....|...+..+.+.++-+.|..++.+..+.-- ..........++.-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 777888888888888888888877743 4556677778888888887888888877765311 1134445556666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 012111 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMK 379 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~ 379 (471)
.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....++.|- -..|...+..=-..|+-..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78888888888777665332 456777778777788888888888888877766553 2334444444334444433
No 104
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1.6e-05 Score=70.47 Aligned_cols=148 Identities=5% Similarity=-0.069 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012111 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIID 228 (471)
Q Consensus 150 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 228 (471)
.++..+-..+...++.++|+.++.++.... +-+..+|+..-..+...| ++++++..++.+.+.. +-+..+|+....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 345555566667788899999999988732 334445666666666666 5788999998888765 446667776665
Q ss_pred HHHccCCH--HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012111 229 GYGKAKKF--EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303 (471)
Q Consensus 229 ~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (471)
.+.+.|.. +++..+++.+.+.. +.+..+|+....++...|+++++++.++++++.+ +-+...|+.....+.+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 66666653 67788888887764 6678888888888888899999999999998876 4455666655544443
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2.5e-06 Score=70.32 Aligned_cols=154 Identities=10% Similarity=0.047 Sum_probs=98.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 343 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 343 (471)
..|...|+++.+....+.+.. |. ..+...++.+++...+....+... .+...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHH
Confidence 457777777776544432221 10 011124556666666666655533 36667777777777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 344 KMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGL--IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420 (471)
Q Consensus 344 ~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 420 (471)
+|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887777753 23566666666653 55565 47788888887777666 67777777777777788888888888
Q ss_pred HHHhCCCCCCHHH
Q 012111 421 TMKERHCVPDNIT 433 (471)
Q Consensus 421 ~~~~~~~~p~~~~ 433 (471)
++.+. .+|+..-
T Consensus 169 ~aL~l-~~~~~~r 180 (198)
T PRK10370 169 KVLDL-NSPRVNR 180 (198)
T ss_pred HHHhh-CCCCccH
Confidence 77765 3444433
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=1.1e-05 Score=75.58 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=57.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342 (471)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (471)
+.+......+.+|+.+++.+.+.. .-...|..+.+.|...|+++.|.++|-+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344445556666666666555432 22334555666666666666666666432 1234455666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 384 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 384 (471)
+.|.++-.+.. |.......|..-..-+-+.|++.+|.++|
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 66666554433 22223344444444445555555555544
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00014 Score=71.00 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (471)
..|+.+..+-.+.|...+|.+-|-+ .-|+..|..+++...+.|.+++-.+.+...++..-.|... +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 4577777777777777777766644 3466778888888888888888888888777766655544 4677788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 012111 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416 (471)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 416 (471)
++.++..+..+++ .-||......+..-|...|.++.|.-+|..+ .-|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 8888877755544 2466666666666677777776666665533 23444555555555555554
Q ss_pred HHHHH------------------------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 417 ELFLT------------------------MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 417 ~~~~~------------------------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
+.-++ |...++.....-..-|+..|-..|-+++-..+++..+
T Consensus 1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 33222 1112223344556666777777777777777766554
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=1.4e-08 Score=56.25 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 426 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 426 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
|+.||..||++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777777777777777777777777777776
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=4.3e-06 Score=71.84 Aligned_cols=189 Identities=16% Similarity=0.084 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--
Q 012111 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI---QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV-- 327 (471)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 327 (471)
......+..+...+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++.+.+........
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3455677777888888999999999998887643 2222 456777888888899999999998888764432221
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 012111 328 TYNIVIETFGKA--------GHIEKMEEYFKKMKHRGMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398 (471)
Q Consensus 328 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 398 (471)
.+..+..++... |+.++|.+.++.+... .|+. ..+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 344444445443 6678888888888765 3432 22222211100 000 00 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 399 FNCIISAYGQAGDVEKMGELFLTMKERHC-VP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
...+...+.+.|++.+|+..+++..+..- .| ....+..+..++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12456678899999999999999987521 12 356788899999999999999999888876554
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=6.4e-05 Score=70.75 Aligned_cols=199 Identities=15% Similarity=0.245 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+..++.+......|..|+.+++.+..+. .-..-|..+...|...|+++.|.++|.+.- .++..|..|
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my 801 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMY 801 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHH
Confidence 45566777777888888888888887653 334557777888888888888888886532 356677888
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 239 (471)
.+.|+|+.|.++-++... -......|.+-..-+-+.|.+.+|.+++-.+. .|+ ..|.+|-+.|..+..
T Consensus 802 ~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDM 869 (1636)
T ss_pred hccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHH
Confidence 888888888888776643 23445556555556677788888777765432 333 246677777887777
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 315 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 315 (471)
+++.++-.. ..-..|...+..-+...|+...|...|-+.. -|..-++.|-..+.|++|.++-.
T Consensus 870 irlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 870 IRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 776655421 1122355566667777888888877765543 25556677777777777776644
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00018 Score=65.44 Aligned_cols=340 Identities=9% Similarity=0.107 Sum_probs=184.0
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (471)
|-|...|..|++-+... .++++.+.++++... ++-....|..-|..-...++++....+|.+.... ..+...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence 77889999999977666 999999999999865 3346788999999999999999999999997762 456777777
Q ss_pred HHHHHHhc-CCH----HHHHHHHHHH-HHCCCCCC-HHHHHHHHHHH---------HccCCHHHHHHHHHHHHHcCCCCC
Q 012111 191 LIKSCTKF-HRF----DLIEKILAEM-SYLGIECS-AVTYNTIIDGY---------GKAKKFEEMESSFSAMVESGGCHP 254 (471)
Q Consensus 191 ll~~~~~~-~~~----~~a~~~~~~~-~~~g~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~ 254 (471)
.++-.-+. ++. +...+.|+-. .+.|+.+- ...|+..+..+ ..+.+.+...++|+++.... -.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP--m~ 169 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP--MH 169 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--cc
Confidence 77654432 222 2233444433 34564433 33444444432 33345667777888886432 11
Q ss_pred CH-HHHHH------HHHH-------HHhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHH----
Q 012111 255 DI-FTLNS------MISA-------YGNSGNIEKMEKWYNEFNL--MGVKADIQ---------------TLNILTK---- 299 (471)
Q Consensus 255 ~~-~~~~~------l~~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~ll~---- 299 (471)
+. ..|+- =|+. --+...+..|.++++++.. .|...... .|..+|.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 21 12221 1111 1123345556666665532 12111100 0111111
Q ss_pred ---------------------------------------------HHHHcCC-------HHHHHHHHHHHHhCCCCCCHH
Q 012111 300 ---------------------------------------------SYGRAGM-------YDKMRSVMDFMQKRFFFPTVV 327 (471)
Q Consensus 300 ---------------------------------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 327 (471)
.+...|+ .+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 223333333332221111222
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHH
Q 012111 328 TYNIVIETFGKA---GHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCI 402 (471)
Q Consensus 328 ~~~~li~~~~~~---g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 402 (471)
+|..+...--.. ...+....+++++...- +.| ..+|..+++...+..-+..|..+|.++.+.+..+ ++.+++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 222222111111 12344455555554432 223 2356667777777777777777777777666555 56666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
+.-+|. ++..-|.++|+--... +.-++..-...+.-+...++-..|+.+|++.+..
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 766654 6667777777765543 2222333345566666666666666666666655
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00019 Score=65.32 Aligned_cols=188 Identities=11% Similarity=0.043 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG---MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349 (471)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 349 (471)
+++..+++..+..-..-+..+|..+...--..- ..+....+++.+......--.-+|...+...-+...+..|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555443322333333433333221111 24455555665554422222346777888888888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 350 KKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428 (471)
Q Consensus 350 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 428 (471)
.++.+.+..+ ...++++++..+| .++..-|.++|+.=.+.-.. ++..-...+.-+...|+-..|..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999988777 6777788887665 57888899999875543222 3444466777888889999999999999988666
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 429 PD--NITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 429 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
|+ ...|..++..-..-|+...+.++-+++...-+
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 65 47899999988889999999999888877665
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=0.00013 Score=69.58 Aligned_cols=210 Identities=15% Similarity=0.105 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCc--------cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWY--------QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD 150 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 150 (471)
..+.+..+.+++.++++-|.-.+..|....+. .++ .+=..........|..++|..+|.+.++
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-------- 828 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 45667778888888888877666555432211 121 3333444455678999999999999875
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHCC-----
Q 012111 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM----------SYLG----- 215 (471)
Q Consensus 151 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~g----- 215 (471)
|..|=..|-..|.+++|.++-+.-.+ +. =..||.....-+-..+|.+.|++.|++. ....
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 33445567778999999998775432 11 2345555555566667777777776542 1111
Q ss_pred ----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 216 ----IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291 (471)
Q Consensus 216 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (471)
-..|...|......+-..|+.+.|+.+|....+ |-.++...|-.|+.++|-++-++ .-|.
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e------sgd~ 967 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE------SGDK 967 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh------cccH
Confidence 012344455555555667888888888877632 55667777778888888887766 3356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012111 292 QTLNILTKSYGRAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 318 (471)
...-.|.+.|-..|++.+|...|.+.+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666778888888888888888887654
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=9.4e-06 Score=66.86 Aligned_cols=163 Identities=13% Similarity=0.062 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 012111 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192 (471)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 192 (471)
+... ..+-..+...|+-+....+........ +-|....+..+....+.|++..|+..+.+... .-++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3334 555556666676666666666644332 22555666677777777777777777777765 3366777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 272 (471)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (471)
-+|.+.|+++.|..-|.+..+.- +-+...++.+.-.+.-.|+.+.|..++....... .-|...-..+..+....|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCCh
Confidence 77777777777777777776653 2345566667777777777777777777765542 33555666666677777777
Q ss_pred HHHHHHHHHH
Q 012111 273 EKMEKWYNEF 282 (471)
Q Consensus 273 ~~a~~~~~~~ 282 (471)
++|..+...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 7777666543
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=4.5e-06 Score=71.73 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=129.4
Q ss_pred cCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCCh---hHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-
Q 012111 74 KNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARC---QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV- 149 (471)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~- 149 (471)
....+.........+...|++++|+..|+.+.... +.+. .++..+..++.+.|++++|...++.+.+.......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34455667777778889999999999999998764 3332 46788888999999999999999999876432111
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012111 150 -DVYTALVSAYGQS--------GLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 219 (471)
Q Consensus 150 -~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 219 (471)
.++..+..++... |+.+.|.+.|+.+... .|+. ..+..+..... .. ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~------~~~~------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LR------NRLA------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HH------HHHH-------
Confidence 2455555555544 6788899999888763 2332 22222211100 00 0000
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (471)
.....+...+.+.|++.+|...++...+..+-.| ....+..+..++...|++++|..+++.+...
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1112456678899999999999999887642222 3567889999999999999999999888654
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3e-05 Score=63.97 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=74.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----A 339 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 339 (471)
..|+..|++++|++..... -+......=+..+.+..+++-|.+.++.|.+. .+..+.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 3455555566555555441 11222222233444555555566666555553 233444444444433 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH-HHHHH
Q 012111 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE-KMGEL 418 (471)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~ 418 (471)
+.+.+|.-+|++|-.+ ..|+..+.+....++...|++++|..+++........ ++.+...++.+-...|... -..+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3455666666666543 3556666666666666666666666666666655444 4444444444444444432 23334
Q ss_pred HHHHH
Q 012111 419 FLTMK 423 (471)
Q Consensus 419 ~~~~~ 423 (471)
+..++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=3.3e-08 Score=54.76 Aligned_cols=32 Identities=38% Similarity=0.763 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012111 144 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175 (471)
Q Consensus 144 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 175 (471)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=1.1e-05 Score=78.93 Aligned_cols=147 Identities=7% Similarity=-0.011 Sum_probs=98.4
Q ss_pred ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 012111 110 YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189 (471)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (471)
++.++.++..|..+..+.|++++|..+++...+.... +......+..++.+.+++++|+..+++.... -+-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 4566777777777777777777777777777765322 4455666777777777777777777777652 234455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 012111 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262 (471)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 262 (471)
.+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++..+.. .+....|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHH
Confidence 66666777777777777777777632 3456677777777777777777777777776653 3444444443
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=2.6e-05 Score=75.78 Aligned_cols=184 Identities=9% Similarity=0.013 Sum_probs=133.8
Q ss_pred cHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 93 KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172 (471)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 172 (471)
+...|+..|-...+.+ +.-...|..|...|....+...|.+.|+...+.... +...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4566777776666543 334568999999999888999999999999877543 6778888999999999999999985
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 012111 173 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 252 (471)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (471)
-..-+......-...|....-.|.+.++...+..-|+...+.. +-|...|..+..+|.++|.+..|.++|.+....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--- 625 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--- 625 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---
Confidence 4433311111112223334445677889999999998888765 457888999999999999999999999888653
Q ss_pred CCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 012111 253 HPDIFTLNSM--ISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 253 ~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
.|+. .|... ...-+..|.+.+|+..+.....
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4543 33332 2335678899999888887654
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.3e-05 Score=75.17 Aligned_cols=211 Identities=8% Similarity=-0.040 Sum_probs=104.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 155 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
+...+...|-...|+.+|+++.. |..++.+|+..|+...|..+..+..+. +|++..|..+.+.....-
T Consensus 404 laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 44455555555566666555432 344555555556555565555555542 455555555555544444
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 012111 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+.-+..+.+++..|.+.|
T Consensus 472 ~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 455555555443221 11111111223455555555555544332 333444444444555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 388 (471)
.......+. +...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 544443111 33455555555555555555555555555544 2233444445555555555555555555543
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=9.9e-06 Score=66.79 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HhcCC--HHHHH
Q 012111 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY-GQAGD--VEKMG 416 (471)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~ 416 (471)
++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.++. +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33344444444443332 224444444444444444444444444444444433 444444444432 33333 24444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 417 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 417 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+++++..+.+ +-+...+..+...+.+.|++++|...|+++++..|.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4444444431 113334444444444444444444444444444443
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.00042 Score=66.98 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=118.7
Q ss_pred HhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHH
Q 012111 55 LRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQAS 134 (471)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (471)
..++.+++.+...++..|.. ..-.+..++ .+.+.|+.++|..+++.....+ ..|..+...+-.+|...++.++|.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~--~~a~vLkaL-sl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA--LYAKVLKAL-SLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc--HHHHHHHHH-HHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHH
Confidence 34455666666665543322 111111222 2346777777777777666554 346667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-C---------HHHH
Q 012111 135 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-R---------FDLI 204 (471)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~~a 204 (471)
.+|+..... -|+......+..+|++.+.+.+-.+.--++-+ ..+-+...+=++++...... . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 777777665 45566666677777776665543333322222 11223333333444333211 1 2235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 205 EKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFS-AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282 (471)
Q Consensus 205 ~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (471)
.+.++.+.+.+ -.-+..-.......+...|++++|.+++. ...+.. ..-+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l-~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL-TSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555443 11122222223344455677888887773 332221 2233333445566677778888877777777
Q ss_pred HhCC
Q 012111 283 NLMG 286 (471)
Q Consensus 283 ~~~~ 286 (471)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7665
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=1.6e-05 Score=65.49 Aligned_cols=157 Identities=11% Similarity=0.017 Sum_probs=82.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012111 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303 (471)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (471)
..+-..+...|+-+....+....... ...|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 33444445555555555554443322 13333344445555556666666666666655433 5555566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 383 (471)
.|+++.|..-|.+..+.... ++..++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666555555554222 34445555555555566666666665555542 22444455555555555666555555
Q ss_pred HH
Q 012111 384 LR 385 (471)
Q Consensus 384 ~~ 385 (471)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00029 Score=64.14 Aligned_cols=237 Identities=14% Similarity=0.016 Sum_probs=138.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHH-------
Q 012111 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS------- 261 (471)
Q Consensus 189 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------- 261 (471)
..+.++..+..++..+.+-++...... -+..-++....+|...|.+...........+.++ -...-|+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r 303 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 345555555666666776666666553 2444455555666666666666665555544431 11112222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341 (471)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 341 (471)
+..+|.+.++++.+...|.+.......|+. ..+....+++....+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 233455566667777777665544333222 112223333333333322221111 1111122455677889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 421 (471)
+..|+..|.+++... +-|...|..-.-+|.+.|.+..|+.-.+..++.++. ....|..-..++....+++.|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988875 447788888899999999999998888888877544 455555556666677788888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh
Q 012111 422 MKERHCVPDNITFATMIQAYNA 443 (471)
Q Consensus 422 ~~~~~~~p~~~~~~~l~~~~~~ 443 (471)
..+. .|+..-+.--+.-|..
T Consensus 452 ale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhc--CchhHHHHHHHHHHHH
Confidence 8874 4655544444433433
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.65 E-value=5e-05 Score=75.36 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (471)
.+..+..+|-+.|+.++|..+|+++.+.. +.+....|.+...|... +.++|.+++.+.+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44455555555555555555555555443 33444555555555555 5555555555443
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=9.5e-05 Score=61.12 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=53.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342 (471)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (471)
.+..+.+-|.+.+++|.+. -+..|.+.|..+|.+ .+.+..|.-+|++|.++ ..|+..+.+-...++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3444444455555554432 133333333333322 23345555555555443 334555555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhC
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENS 390 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~ 390 (471)
++|..+++....+. .-++.+...++.+....|... ...+.+.++...
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555555555543 223444444444433444332 233444444443
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=1.9e-05 Score=77.31 Aligned_cols=147 Identities=7% Similarity=0.019 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012111 287 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366 (471)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 366 (471)
.+.+...+..|.......|..++|..+++...+..+. +......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3556777888888888888888888888888775322 34456667777888888888888888888763 224566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 437 (471)
+..++...|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+. ..|....|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 777888888888888888888875443 5777788888888888888888888888765 34455554443
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=6.7e-06 Score=64.06 Aligned_cols=95 Identities=8% Similarity=-0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445666677777777777777777653 335667777777777777777777777777776654 66777777777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 012111 409 AGDVEKMGELFLTMKER 425 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~~ 425 (471)
.|++++|+..|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777763
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=1.9e-06 Score=67.11 Aligned_cols=113 Identities=8% Similarity=-0.052 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 347 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426 (471)
Q Consensus 347 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 426 (471)
.++++..+. .|+ .+..+...+...|++++|...|+.+...++. +...|..+..++...|++++|+..|++....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 456665553 344 3556788889999999999999999998776 8899999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 427 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 427 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
-+.+...+..+..++...|+.++|...+++.++..|...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 234778888999999999999999999999999988754
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2.4e-05 Score=70.23 Aligned_cols=140 Identities=16% Similarity=0.081 Sum_probs=105.8
Q ss_pred HHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 012111 87 EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS-VDVYTALVSAYGQSGLL 165 (471)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~ 165 (471)
.....|+++.|+..++.+.... |.|..........+.+.++..+|.+.++.+... .|+ ....-.+..++.+.|+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3446788888888888887763 566666677777888888888888888888876 444 55666777888888888
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012111 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245 (471)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (471)
.+|+.+++.... ..+-|+..|..|..+|...|+..++.....+. |...|+++.|...+..
T Consensus 391 ~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 391 QEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHH
Confidence 888888888775 34677788888888888888877766555443 4456888888888877
Q ss_pred HHHcC
Q 012111 246 MVESG 250 (471)
Q Consensus 246 ~~~~~ 250 (471)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76653
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=0.00011 Score=72.97 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012111 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 226 (471)
Q Consensus 148 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 226 (471)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4667888888888888888888888877663 33332 233333355555554443333 34
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012111 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306 (471)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 306 (471)
+.......++..+..+...+.+. .-+...+..+..+|-+.|+.++|..+|+++.+.. +-+..+.|.+...|... +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 44445555665555555555543 3345578889999999999999999999999887 77889999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------CCCCCHHHHHHH
Q 012111 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-------------------GMKPNSITYCSL 367 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~l 367 (471)
+++|..++.+.... +...+++..+.++|.++... |..--..++..+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 99999998877654 34444555555555555543 212223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
-..|...++++++..+++.+.+.... |......++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 45555666666666666666665554 5555555555554
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=5.1e-06 Score=64.37 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 410 (471)
.+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.++. +...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 33344444455555555555444432 223444444444444555555555555544444322 3344444444444555
Q ss_pred CHHHHHHHHHHHHh
Q 012111 411 DVEKMGELFLTMKE 424 (471)
Q Consensus 411 ~~~~a~~~~~~~~~ 424 (471)
++++|...|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00033 Score=63.20 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=76.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMK 379 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 379 (471)
+...|++++|+..+..+....+ -|+..+....+.+...++.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 4456677777777777666522 24555555566777777777777777777765 444 4455566677777777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420 (471)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 420 (471)
|..+++......+. |+..|..|.++|...|+..++..-..
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH
Confidence 77777777666555 67777777777777777666655443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00026 Score=58.14 Aligned_cols=187 Identities=14% Similarity=0.061 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 128 KQPEQASLLFEVMLSD---G-LKPSVD-VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 202 (471)
Q Consensus 128 ~~~~~a~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 202 (471)
.+.++.++++..+... | ..++.. .|..++-+....|+.+.|...++.+.... +-+...-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666665532 2 334443 34555666667788888888888877633 222222222222244567788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282 (471)
Q Consensus 203 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (471)
+|.++++.+.+.. +.|..++-.-+...-..|+.-+|++.+....+. +..|...|.-+...|...|+++.|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888887765 556666666666666677777888888777776 4778888888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 012111 283 NLMGVKADIQTLNILTKSYGRAG---MYDKMRSVMDFMQKR 320 (471)
Q Consensus 283 ~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 320 (471)
.-.. |.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7543 445555555555544333 455667777766665
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00043 Score=56.92 Aligned_cols=189 Identities=8% Similarity=0.038 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 199 HRFDLIEKILAEMSY---LG-IECSA-VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273 (471)
Q Consensus 199 ~~~~~a~~~~~~~~~---~g-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 273 (471)
.+.++..+++.+++. .| ..++. ..|..++-+....|+.+.|...++.+..+. +-+...-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 355666666665543 23 33343 345566666777888888888888887663 223222222223345678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (471)
+|.++|+.+.+.+ +.|..++..=+-..-..|.--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888766 666677766666666677777787777777766 44588899999999999999999999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Q 012111 354 HRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDV 392 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~ 392 (471)
-.. +.++..+..+...+.-.| +.+.+.++|.+..+...
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 753 335555566666655444 56678888888887654
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=0.0011 Score=64.89 Aligned_cols=155 Identities=10% Similarity=-0.021 Sum_probs=112.7
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK-PSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~ 167 (471)
+...+...|.+.|+.+.+.+ ..+..........|++..+++.|..+.-...+.... .-...|....-.|.+.++...
T Consensus 503 rd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 503 RDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 34447778999999998876 667788899999999999999999884333332110 011223344456777889999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-AVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
|+.-|+...+. -+.|...|..+..+|...|++..|.++|.+..... |+ ...-......-+..|++.+|+..+..+
T Consensus 581 aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 581 AVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999988763 35678899999999999999999999999887653 33 222223334456689999999988877
Q ss_pred HHc
Q 012111 247 VES 249 (471)
Q Consensus 247 ~~~ 249 (471)
...
T Consensus 657 i~~ 659 (1238)
T KOG1127|consen 657 IYA 659 (1238)
T ss_pred HHH
Confidence 643
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=2.8e-05 Score=60.17 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (471)
......+...+...|++++|...++.+...++. +...+..+...+...|++++|..+++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344556666677777777777777777766544 66677777777777777777777777776642 3355666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 441 YNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
+...|++++|...+++.++..|+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccc
Confidence 7777777777777777777776544
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=6.8e-05 Score=58.68 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT--PFFNCI 402 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 402 (471)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344455444 4778888888888887763 222 223344556777888888888888888876533322 244456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
...+...|++++|+..++..... ......+......+.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788889999998888764432 234455666778888999999998888765
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=7.5e-05 Score=67.71 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012111 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409 (471)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (471)
..|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+. +...+......|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555556677888888888877753 44 3344666677777777788888777765544 666666667777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 410 GDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 410 g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
++++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888774 554 4577788888888888888877776553
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.8e-06 Score=47.88 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 430 (471)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888876
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=9.7e-05 Score=67.01 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (471)
....|+..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+..+... -+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34455556666677777777777776543 43 333466666666666777777766665422 24455555556666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
+.++++.|+.+.+++... .|+ -.+|..|..+|...|+++.|+..++.+--
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777777777777764 443 34677777777777777777776665543
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.4e-06 Score=47.10 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 012111 397 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 429 (471)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 429 (471)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356777777777777777777777777766665
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=7.7e-05 Score=56.19 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VPDNITFATMI 438 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~ 438 (471)
++..++..+.+.|++++|.+.+..+.+..+. .....+..+..++...|++++|...|+.+....- ......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555556666666666555543221 0123444455566666666666666666554310 01133445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 439 QAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
.++.+.|+.++|.+.++++++..|++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 55666666666666666666665543
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=6.5e-05 Score=53.74 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (471)
+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 334455555566666666666666554332 33455556666666666777777666666542 2233455566666666
Q ss_pred cCCHHHHHHHHHHHHHhhh
Q 012111 444 LGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~ 462 (471)
.|+++.|...+++.++..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 6777777777666665443
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.011 Score=57.65 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=123.4
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHH-HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC
Q 012111 50 DLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEA-IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK 128 (471)
Q Consensus 50 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (471)
.+.+.++..++...++..-. ...+.+..++.+..+ ...++.++|..+|+.+.+.. |+.+....+..+|.+.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~----~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYG----LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHhcCchhHHHHHhhhcc----CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHH
Confidence 34667777777744443322 222234444445444 46799999999999999874 66888888889999998
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 012111 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-L---------LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198 (471)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~---------~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 198 (471)
++.+-.++--+|-+. ++-+...+=+++..+...- . ..-|...++.+.+..|---+..-...-...+...
T Consensus 125 ~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 887665555555443 2223333334444443321 1 2346667777776444222222233344455677
Q ss_pred CCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 012111 199 HRFDLIEKIL-AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250 (471)
Q Consensus 199 ~~~~~a~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (471)
|.+++|..++ ....+.-...+...-+.-+..+...+++.+..++-.++...+
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8899999999 444444444566666778889999999999999999998875
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.12 E-value=5.9e-05 Score=68.67 Aligned_cols=121 Identities=11% Similarity=0.141 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012111 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365 (471)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 365 (471)
+.+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555555555555566666655555443 111122333456666666666666666666655666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666555544444444444444444443
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=6.7e-06 Score=46.25 Aligned_cols=33 Identities=45% Similarity=0.813 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 360 (471)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00037 Score=54.52 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=62.3
Q ss_pred HhhcHHHHHHHHHHhhhccCccCC---hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQAR---CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV--DVYTALVSAYGQSGL 164 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~ 164 (471)
..+++..+.+.++.+.... +.+ ....-.+...+...|++++|...|+........++. ...-.|...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4566666666666666543 222 222333445566666666666666666665422221 123334556666666
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 210 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 210 (471)
+++|+..++.... -......+......+.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666655332 123334455555566666666666666554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.8e-06 Score=45.40 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 359 (471)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555554444
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0039 Score=53.28 Aligned_cols=185 Identities=11% Similarity=0.035 Sum_probs=104.9
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhH---HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQT---FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (471)
++.........+...|++++|++.|+.+.... |-+... .-.++.++.+.+++++|...+++..+.-+.-...-|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 44455555666678899999999999988764 333322 2466677888899999999998888764332222333
Q ss_pred HHHHHHHh--cC---------------C---HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 154 ALVSAYGQ--SG---------------L---LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213 (471)
Q Consensus 154 ~li~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (471)
..+.+.+. .+ + ...|+..|+.+.+ -|-...-..+|...+..+..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHH
Confidence 33333321 11 1 1233334444333 22222233344443333322
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283 (471)
Q Consensus 214 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (471)
. =...-..+.+.|.+.|.+..|..-++.+.+...- +........++.+|...|..++|..+...+.
T Consensus 173 ~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 R----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 0111124566677888888888888888765422 2223455566677777788777777666543
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.01 E-value=0.00014 Score=51.75 Aligned_cols=69 Identities=4% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 375 GLIMKVDSILRQVENSDV-ILDTPFFNCIISAYGQA--------GDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 443 (471)
Q Consensus 375 g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 443 (471)
+++.....+|+.+++.|+ .|+..+|+.++.+.++. ++.-..+.+|+.|...+++|+..+|+.++..+.+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 444444444444444444 34444444444433322 1233455666677766677777777777666544
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.00013 Score=66.53 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 012111 252 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329 (471)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 329 (471)
.+.+......+++.+....+.+.+..++.++... ....-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4567778888999999999999999999998765 22233456679999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012111 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374 (471)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 374 (471)
+.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999887777778887777777665
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.00034 Score=53.83 Aligned_cols=91 Identities=4% Similarity=-0.122 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|+..|......++. |+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 3444455666666666666555532 113444455555555666666666666666655543 55555556666666666
Q ss_pred HHHHHHHHHHHHh
Q 012111 412 VEKMGELFLTMKE 424 (471)
Q Consensus 412 ~~~a~~~~~~~~~ 424 (471)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00041 Score=52.17 Aligned_cols=98 Identities=13% Similarity=0.012 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCc-cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWY-QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK--PSVDVYTALV 156 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li 156 (471)
.+......+.+.|++++|.+.|+.+.+..+- +.....+..+..++.+.|+++.|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4445555566777777777777777654310 111345556667777777777777777776654221 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 012111 157 SAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~ 177 (471)
.++...|+.++|...++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 666677777777777777665
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00031 Score=63.93 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 82 LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 161 (471)
Q Consensus 82 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (471)
......+...|++++|++.|+.+.+.. +.+...|..+..++...|++++|+..++..+..... +...|..+..+|..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~ 82 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 334556678999999999999999876 667788999999999999999999999999887533 67788889999999
Q ss_pred cCCHHHHHHHHHHhhcC
Q 012111 162 SGLLDEAFSTINDMKSV 178 (471)
Q Consensus 162 ~~~~~~a~~~~~~~~~~ 178 (471)
.|++++|+..|++....
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 99999999999998873
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.93 E-value=2.8e-05 Score=54.26 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 012111 374 AGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQ 451 (471)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 451 (471)
.|+++.|+.+++++.+..+. ++...+-.+..+|.+.|++++|..+++. .+ ..|+ ......+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777765442 2344445567777777777777777766 22 1222 233344457777777777777
Q ss_pred HHHHH
Q 012111 452 NLENK 456 (471)
Q Consensus 452 ~~~~~ 456 (471)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=0.00025 Score=50.51 Aligned_cols=75 Identities=9% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHRGM-KPNSITYCSLVSAYSKAG--------LIMKVDSILRQVENSDVILDTPFFNCII 403 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (471)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 555555555555544332 1223445555555555555555555555
Q ss_pred HHHH
Q 012111 404 SAYG 407 (471)
Q Consensus 404 ~~~~ 407 (471)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=0.00032 Score=63.88 Aligned_cols=103 Identities=10% Similarity=-0.002 Sum_probs=86.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
-...+...|++++|+..|.+++... +-+...|..+..+|...|++++|...++++.+.++. +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3456678899999999999999864 346778888999999999999999999999988765 77888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 412 VEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 412 ~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
+++|+..|++..+. .|+.......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999999974 56655554444
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0018 Score=57.15 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=54.5
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-----CHH-HHHH
Q 012111 335 TFGKA-GHIEKMEEYFKKMKHR----GMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----DTP-FFNC 401 (471)
Q Consensus 335 ~~~~~-g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ 401 (471)
.|... |++++|++.|++.... + .+ -..++..+...+.+.|++++|.++|+++....... +.. .|-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5556666655554432 1 11 12234455556666666666666666655432211 111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 012111 402 IISAYGQAGDVEKMGELFLTMKER--HCVPD--NITFATMIQAYNAL--GMTEAAQNLENKMIA 459 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~ 459 (471)
.+-++...||...|.+.+++.... ++..+ ......|+.++-.. ..++.|..-|+.+.+
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 233445556666666666666543 12212 23344455555322 235555544444433
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00044 Score=49.30 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3345555666677777777777666542 223355666666677777777777777776665443 44566666677777
Q ss_pred cCCHHHHHHHHHHHHh
Q 012111 409 AGDVEKMGELFLTMKE 424 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~ 424 (471)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776654
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00049 Score=60.35 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012111 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370 (471)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 370 (471)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566777777777777778888877775422 233344443333 22245666677777777765 34466667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 371 YSKAGLIMKVDSILRQVENSDVILD---TPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
+...|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 2211 236777777777777777777777777763
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.88 E-value=3.2e-05 Score=53.94 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=53.1
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 170 (471)
.|+++.|+.+|+.+.+.....++...+..+..++.+.|++++|..+++. ...+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5778888888888887642112344555577888888888888888877 32221 133444455777888888888888
Q ss_pred HHHH
Q 012111 171 TIND 174 (471)
Q Consensus 171 ~~~~ 174 (471)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.86 E-value=0.00087 Score=51.63 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+-..-..+...|++++|.++|+.+...+ +.+..-|..|..++-..|++++|+..|.......+. ++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34445556678899999999999988865 566677888888888889999999999998888753 788888889999
Q ss_pred HhcCCHHHHHHHHHHhhcCC
Q 012111 160 GQSGLLDEAFSTINDMKSVS 179 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~ 179 (471)
...|+.+.|.+.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999998877643
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.2e-05 Score=42.65 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKERH 426 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 426 (471)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=0.03 Score=53.24 Aligned_cols=124 Identities=11% Similarity=-0.007 Sum_probs=67.7
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccC--------ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA--------RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK 146 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 146 (471)
++.|+.+..+.......-.++.|...|-....-.|++. +...-. ...-+--|++++|.++|-+|.++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhhh-
Confidence 45566666666666667777788877766654332211 001111 1112234889999999988876522
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 147 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 209 (471)
Q Consensus 147 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (471)
.|..+.+.|++-...++++.--......--...|+.+...+.....++.|.+.+.
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777776666665422110011112345666665555555555555554
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.001 Score=53.76 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+..+. +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 455555566666777777777776665432221 345666666666777777777777666665433 45555555666
Q ss_pred HHhcCCHHHHH
Q 012111 406 YGQAGDVEKMG 416 (471)
Q Consensus 406 ~~~~g~~~~a~ 416 (471)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66655544443
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.0019 Score=61.61 Aligned_cols=140 Identities=6% Similarity=0.090 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 012111 322 FFPTVVTYNIVIETFGKA--G---HIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKA--------GLIMKVDSILRQV 387 (471)
Q Consensus 322 ~~~~~~~~~~li~~~~~~--g---~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~--------g~~~~a~~~~~~~ 387 (471)
...+...|...+.+.... + +.+.|..+|++..+. .|+ ...|..+..++... ++...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 344556666666554332 1 255677777776664 443 33343333322221 1122333333333
Q ss_pred HhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 388 ENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 388 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
... ....+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.++++..++|..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 222 12224456666655556667777777777777774 46777777777777777777777777777777777654
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0084 Score=53.21 Aligned_cols=341 Identities=9% Similarity=-0.079 Sum_probs=164.8
Q ss_pred HHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 88 AIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
+.+..++..|+..+..+.... +.++.-|..-+..+...+++++|.--.+.-.+.... ....+.-.-+++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 446677788888888887764 566666777777777777777776666554443111 11222333333333444444
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHccCCHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTI-IDGYGKAKKFEEMESSFSA 245 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 245 (471)
|.+.++.-. .| ....++..++....... +|.-.++..+ ..++.-.|++++|..+--.
T Consensus 136 A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 136 AEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 443333100 00 00111111111111111 1222222222 2334445566666555555
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHHcCCHHHHHH
Q 012111 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI-------------LTKSYGRAGMYDKMRS 312 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------ll~~~~~~~~~~~a~~ 312 (471)
+.+.. ..+....-.-..++.-.++.+.+...|++.+.. .|+...-.. =.+-..+.|.+..|.+
T Consensus 195 ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 195 ILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 54432 111111111122333455556666666655443 233221111 1123457788888888
Q ss_pred HHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 313 VMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVE 388 (471)
Q Consensus 313 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 388 (471)
.+.+.+... ..++...|.....+..+.|+.++|+.--+...+. .+. ...|..-..++...+++++|.+-++...
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776542 4455566777777777888888888777766653 221 2233334445666688888888888777
Q ss_pred hCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 012111 389 NSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY---NALGMTEAAQNLENKMIA 459 (471)
Q Consensus 389 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 459 (471)
+..-.+ ...++.....++-+..+. .=..++--.......|....|..+.-.+ ...|.-.+|...|.+.-+
T Consensus 349 q~~~s~e~r~~l~~A~~aLkkSkRk-d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 349 QLEKDCEIRRTLREAQLALKKSKRK-DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred hhccccchHHHHHHHHHHHHHhhhh-hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 653321 122222222233222211 1111111112222335555665443333 234555777777766543
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.0011 Score=58.25 Aligned_cols=130 Identities=14% Similarity=0.170 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHH-HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVM-LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
.++..++...+.+..+.|..+|..+.+.. ..+..+|...... +...++.+.|..+|+...+. +..+...|..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45667777778888999999999998654 3344555555554 33356777799999988775 44577888888888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDV---YTYSILIKSCTKFHRFDLIEKILAEMSYL 214 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 214 (471)
+...|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999998863 33322 47888888778888888888888877764
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.0028 Score=51.27 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 368 (471)
...+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+.+..... +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44567777888889999999999998887543332 3577788888899999999999999888753 22466677777
Q ss_pred HHHHhcCCHHHHHHHH
Q 012111 369 SAYSKAGLIMKVDSIL 384 (471)
Q Consensus 369 ~~~~~~g~~~~a~~~~ 384 (471)
..+...|+...+..-+
T Consensus 114 ~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHcCChHhHhhCH
Confidence 7888877766555433
No 171
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.78 E-value=0.00098 Score=53.91 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=77.4
Q ss_pred HHHHHHHhhhccCccCChhHHHHHHHHHhcC-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 97 ALKIFGLLRQQQWYQARCQTFTKLMVMLGKC-----KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST 171 (471)
Q Consensus 97 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 171 (471)
-...|+.+... ..+-.+|..+++.+.+. |.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+
T Consensus 33 ~~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~ 107 (228)
T PF06239_consen 33 HEELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF 107 (228)
T ss_pred hHHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH
Confidence 35556555432 45677788888877643 6677777788888888888888888888877653 2211 1111
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012111 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235 (471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 235 (471)
|+.+ ..-| -.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~----------------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAE----------------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHH----------------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 1111 12456788999999999999999999999999977665
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.01 Score=46.67 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=69.2
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 012111 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191 (471)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (471)
|++.....|...+...|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+...-..++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45555555666666666666666666665543344455555566666666666666666666655422111122233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012111 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244 (471)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (471)
.+.+...|....|...|+..... -|+...-......+.+.|+.+++..-+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 55555566666666666666554 3343333333444455555554444333
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0052 Score=54.18 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=54.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHH
Q 012111 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-KKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYG 267 (471)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 267 (471)
..|...|++..|-+++..+ ...|... |+++.|.+.|++..+....... ...+..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3455556555555544443 3345555 6777777777665432100001 223445556666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 268 NSGNIEKMEKWYNEFNLMGVKA-----DIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
+.|++++|.++|+++....... +.. .|...+-++...|+...|...++.....
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777777665432211 111 2222333445556666666666665543
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.015 Score=49.70 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
.+.+-|.+.|.+..|+.-++.+.+. +-+........++.+|...|..++|........
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566788899999999999998875 222344566678899999999999988776543
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=9.9e-05 Score=49.03 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (471)
.+.|++++|++.|+.+.+.. |.+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 46788888888888887764 567777778888888888888888888887766 4454444333
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.77 E-value=0.00018 Score=47.26 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+...+...|++++|.+.|+++.+.. +-+...+..+..++...|++++|..+++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4556778888888888888888763 2255667777788888888888888888888887764
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00064 Score=57.53 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=60.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 012111 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP-NSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 377 (471)
.-+.+.+++.+|+..|...++.... |.+-|..-..+|.+.|.++.|++-.+..+.. .| ...+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 3455667777777777777765332 5666666677777777777777766666653 33 345677777777777777
Q ss_pred HHHHHHHHHHHhCCC
Q 012111 378 MKVDSILRQVENSDV 392 (471)
Q Consensus 378 ~~a~~~~~~~~~~~~ 392 (471)
++|.+.|+...+.++
T Consensus 166 ~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 166 EEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHhhhccCC
Confidence 777777777666543
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00066 Score=57.46 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=82.8
Q ss_pred HHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 87 EAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166 (471)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 166 (471)
.+.+.++|.+|+..|..+.+.. |.|..-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3467889999999999999875 677788888999999999999999988888876432 4678999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 012111 167 EAFSTINDMKSVSDCKPDVYTYSILIKS 194 (471)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 194 (471)
+|++.|++..+ +.|+-.+|-.=+..
T Consensus 167 ~A~~aykKaLe---ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE---LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc---cCCCcHHHHHHHHH
Confidence 99999998876 46777666544443
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00022 Score=47.52 Aligned_cols=67 Identities=22% Similarity=0.182 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhhh
Q 012111 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKE 462 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~ 462 (471)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|.+.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677778888888888888888888888752 225567777778888888 68888888888887765
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=6.6e-05 Score=40.70 Aligned_cols=29 Identities=41% Similarity=0.722 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRG 356 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (471)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 35555555555555555555555555443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0014 Score=52.80 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
.|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++........ ....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34445555555666666666666665432111 1235555666666666666666666666554322 33344444444
Q ss_pred HH-------hcCCHHHHHHHHH
Q 012111 406 YG-------QAGDVEKMGELFL 420 (471)
Q Consensus 406 ~~-------~~g~~~~a~~~~~ 420 (471)
+. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5566554444444
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.65 E-value=0.012 Score=48.99 Aligned_cols=179 Identities=19% Similarity=0.111 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccC-ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA-RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (471)
++.+..........|++.+|++.|+.+....+..+ ...+.-.++.++.+.|+++.|...++...+.-+.-....+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 44555666677889999999999999988742222 23556778888999999999999999988763221122233222
Q ss_pred HHHHhcCC-------------HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012111 157 SAYGQSGL-------------LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223 (471)
Q Consensus 157 ~~~~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 223 (471)
.+.+.... ..+|+. .+..++.-|-...-...|...+..+.+. =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHH
Confidence 22221111 112222 2344444444555555665555554322 11112
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 012111 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKME 276 (471)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 276 (471)
-.+.+.|.+.|.+..|..-++.+.+...-.+ .......++.++.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3366778888899888888888887631111 1234456677777777776443
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.002 Score=55.59 Aligned_cols=99 Identities=8% Similarity=-0.009 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD----NITFATM 437 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l 437 (471)
|...+..+.+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 33333333444555555555555554433211 234444555555566666666666655542 121 2333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 438 IQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
...+...|+.++|.+.++++++..|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 445555666666666666666555543
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.60 E-value=0.0021 Score=52.00 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012111 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----------------GLIMKVDSILRQVENSDVILDTPFFNCII 403 (471)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (471)
|..+=....+..|.+-|+.-|..+|+.|++.+-+. .+-+-|++++++|.+.|+.||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444444444444444444443321 23455677777777777777777777777
Q ss_pred HHHHhcC
Q 012111 404 SAYGQAG 410 (471)
Q Consensus 404 ~~~~~~g 410 (471)
..+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 7775544
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.011 Score=56.46 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444455566666666555543 34555555555555556666666655555544
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0065 Score=51.89 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA---GLIMKVDSILRQVENSDVILDTPFFNC 401 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 401 (471)
|...|-.|...|...|+++.|...|.+..+.. .+++..+..+..++..+ ....++..+|+++...++. |......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 56667777777777777777777777666642 33455555555554433 2344566777777766655 6666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 402 IISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666677777777777777777664
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.003 Score=50.85 Aligned_cols=61 Identities=11% Similarity=-0.099 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012111 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248 (471)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (471)
|..+...+...|++++|...|+........+ ...++..+...+...|++++|+..+++..+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333334444444444444444443331111 122444444455555555555555555443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00039 Score=46.13 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 435 (471)
..|++++|.++|+.+....+. +..++..+..+|.+.|++++|.++++++... .|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 456666666666666655544 5555556666666666666666666666653 35544433
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.016 Score=43.01 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHh
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQ 408 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 408 (471)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++......+. .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4455566777777777777777665443 234555666677777777777777776654322 011222223345566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
.|+.++|++.+-.... ++...|..-|..|
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 7777777777655443 2333444444444
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.46 E-value=0.00076 Score=44.20 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+...+...|++++|...|+++.+..+. +...+..+..++...|++++|..+|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777776644 666777777777777777777777777765
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.015 Score=49.83 Aligned_cols=107 Identities=10% Similarity=-0.043 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 012111 358 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERHCVPDNITF 434 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 434 (471)
+-|...|..|...|...|+.+.|..-|....+...+ +...+..+..++.... +..++..+|+++.... +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 447778888888888888888888888888877554 7777777777665443 3557788888887742 2355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 012111 435 ATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466 (471)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 466 (471)
..|...++..|++.+|...|+.|.+..|..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66667888888888888888888888776654
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.055 Score=45.22 Aligned_cols=132 Identities=15% Similarity=0.068 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH---
Q 012111 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI--- 192 (471)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--- 192 (471)
+.+.++.++...|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|++..+.. -..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhh
Confidence 4566777777788888888888888887766677788888888888888888888888766522 233333333332
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 012111 193 --KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249 (471)
Q Consensus 193 --~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (471)
..+.-.+++..|...+++..... +.|+...|.-.-+..-.|+..+|++.++.+.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445567777777777766554 334555554444444557777777777777664
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.04 Score=45.83 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 012111 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN----ITFATMIQA 440 (471)
Q Consensus 365 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~ 440 (471)
..++.-|-...-..+|...+..+.+. =...--.+...|.+.|.+..|..-++.+++. -|+. .....++.+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHH
Confidence 33444444445555665555544431 0011123566788889999999999888875 3443 345667788
Q ss_pred HHhcCCHHHHH
Q 012111 441 YNALGMTEAAQ 451 (471)
Q Consensus 441 ~~~~g~~~~A~ 451 (471)
+.+.|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 88888887553
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0047 Score=54.72 Aligned_cols=136 Identities=12% Similarity=0.034 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-cCHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMK----HRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVI-LDTP 397 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~ 397 (471)
.|..|...|.-.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+... +.|-. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555556677777776554322 11211 123456667777777788888877776533 22211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKE----R-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+...|...|.-..+++.|+.++.+-.. . ...-....+.+|..+|...|.-+.|+.+.+.-.+....
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 445566666666777777777654321 1 12234567778888888888888887777666555443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.013 Score=48.87 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL----- 367 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----- 367 (471)
+.+.++..+...|.+.-....+..+++...+-++...+.+.+.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555555566666666666666666655556666667777777777777777777765544223333333322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 435 (471)
...+.-++++..|...+.++...+.. |+...|.-.-+....|+..+|++.++.|.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 23344556677777777777666544 5555555555555668888888888888774 45444433
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.0011 Score=44.15 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKE 424 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 424 (471)
+.+|..+...+...|++++|+..|++..+.++. +...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455666666666666666666666666665544 5556666666666666 56666666666554
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.066 Score=50.60 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--------
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI-------- 432 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------- 432 (471)
..+...+...+.+...+..|-++|..|-+. ..+++.....++|++|..+-++.-+ +.||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 344445555555556666666666665432 2455566667777777776665544 233322
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012111 433 ---TFATMIQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 433 ---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
-|.-.-++|.++|+..+|.++++.+...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345677777777777777766543
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.31 E-value=0.12 Score=46.74 Aligned_cols=144 Identities=8% Similarity=0.071 Sum_probs=92.4
Q ss_pred HHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 98 LKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
+++=+.+... |.|...|..|+..+...+..++..+++++|..- ++--..+|..-+.+-...+++.....+|.+...
T Consensus 29 lrLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 4555555543 678889999999999999999999999999753 233456788888877778899999999998876
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHH-CCCCCC-HHHHHH---HHHHHHccCCHH------HHH
Q 012111 178 VSDCKPDVYTYSILIKSCTKFHR------FDLIEKILAEMSY-LGIECS-AVTYNT---IIDGYGKAKKFE------EME 240 (471)
Q Consensus 178 ~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~-~g~~~~-~~~~~~---l~~~~~~~~~~~------~a~ 240 (471)
. ..+...|...+.-..+... -....+.|+-... .++.|- ...|+. .+...-..|.++ ...
T Consensus 105 -k--~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 105 -K--SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred -h--hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 2 3556677777765544331 1122334443332 345443 233443 344444455554 445
Q ss_pred HHHHHHHH
Q 012111 241 SSFSAMVE 248 (471)
Q Consensus 241 ~~~~~~~~ 248 (471)
+.+.++..
T Consensus 182 ~~Y~ral~ 189 (660)
T COG5107 182 NGYMRALQ 189 (660)
T ss_pred HHHHHHHc
Confidence 55666654
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.11 Score=46.23 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
+.+.-+.-+...|+...|.++-... -.|+..-|-..+.+++..++|++...+... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 3344455556666666666654433 235666677777777777777766554321 1 12355777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
+.|+..+|..+...+. +..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777777776666511 134556667777777776654433
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.13 Score=46.11 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=149.5
Q ss_pred hhhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHH
Q 012111 45 KEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVML 124 (471)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (471)
+....+--+..++.+++......++..+.. ...+...+..+...|++++|+--.+.-.+.. +.....+...-.++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 344555567778888888887777755433 4455566666777888988887776665532 22233445555555
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH-HHHhcCCHHH
Q 012111 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK-SCTKFHRFDL 203 (471)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~ 203 (471)
...++..+|.+.++.- ..| ....++..++.+....--+|...++..+-. ++.-.++.++
T Consensus 128 ~a~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred hhhHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 5556666666555511 111 112233333333321111233334333322 2344566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHH----------HHHHHHHhcCCHH
Q 012111 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN----------SMISAYGNSGNIE 273 (471)
Q Consensus 204 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~ 273 (471)
|.++--..++.. ..+......--.++.-.++.+.|...|++.+..+.-..+..+.. .-.+-..+.|++.
T Consensus 188 a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 188 AQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 666655555442 11222221112223345566666666666654321111111111 1123345678888
Q ss_pred HHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 012111 274 KMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV---TYNIVIETFGKAGHIEKMEE 347 (471)
Q Consensus 274 ~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~ 347 (471)
.|.+.|.+.+... +.++...|........+.|+.++|+.--+...+. |.. .|-.-..++.-.++|++|++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888876542 3455556666666777788888887777666653 332 22222334455677888888
Q ss_pred HHHHHHHc
Q 012111 348 YFKKMKHR 355 (471)
Q Consensus 348 ~~~~m~~~ 355 (471)
-++...+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 88777655
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.032 Score=41.48 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 123 MLGKCKQPEQASLLFEVMLSDGLKPS--VDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444555555554444443322 12233344444444555555555544443
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0049 Score=48.26 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-----ERHCVPDNITFA 435 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~ 435 (471)
+...++..+...|++++|..+++.+...++. +...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4555666677778888888888888877665 77788888888888888888888887765 347777776643
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.23 Score=47.67 Aligned_cols=192 Identities=11% Similarity=0.052 Sum_probs=108.9
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
.--|++++|.++|-.+.+++ ..+..+.+.|++-.+.+++..--.. .-..-...|+.+...++....++.
T Consensus 745 ~~~g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hhhcchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888887776543 3455666777777777666542111 001123467778888888888888
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
|.+.|..-.. ....+.++.+..++++-+.+-..+ +-+....-.+..++.+.|.-++|.+.|-+..
T Consensus 815 A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 815 AAKYYSYCGD----------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 8888775432 122455555555555544444433 3344555566677777777777777665441
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHH
Q 012111 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL--------------NILTKSYGRAGMYDKMRSV 313 (471)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~ll~~~~~~~~~~~a~~~ 313 (471)
.|. ..+..|...+++.+|.++-+... -|.+.+. .--|..+.+.|..-.|.++
T Consensus 880 -----~pk-----aAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarl 945 (1189)
T KOG2041|consen 880 -----LPK-----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARL 945 (1189)
T ss_pred -----CcH-----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHH
Confidence 222 23445566666666666554432 1222221 1124456666666666666
Q ss_pred HHHHHh
Q 012111 314 MDFMQK 319 (471)
Q Consensus 314 ~~~~~~ 319 (471)
+.+|.+
T Consensus 946 l~qmae 951 (1189)
T KOG2041|consen 946 LSQMAE 951 (1189)
T ss_pred HHHHhH
Confidence 666643
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.0022 Score=43.19 Aligned_cols=54 Identities=17% Similarity=0.019 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.|.+.+++++|.++++.+...++. +...+.....++...|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555444433 444444444444455555555555554444
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.16 E-value=0.14 Score=46.24 Aligned_cols=166 Identities=14% Similarity=0.093 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGR---AGMYDKMRSVMDFMQKRFFFPTVVTYNI 331 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (471)
+...++-+|....+++...++.+.+.... +.-....--...-++.+ .|+.++|.+++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455566888888898888888887642 11122222334445556 7888888888888666666677788887
Q ss_pred HHHHHHh----c-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HH-HHhCC---
Q 012111 332 VIETFGK----A-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM----KVDSIL---RQ-VENSD--- 391 (471)
Q Consensus 332 li~~~~~----~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~----~a~~~~---~~-~~~~~--- 391 (471)
+...|-. . ...++|...|.+.-.. .|+..+-..++..+...|... +..++- .. +.+.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7766532 1 2356677777665553 355443333333333344322 222332 11 11222
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
...+.-.+.+++.++.-.|+.++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2234445566777777777777777777777764
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.014 Score=51.82 Aligned_cols=268 Identities=14% Similarity=0.041 Sum_probs=154.4
Q ss_pred HHHHHhhcHHHHHHHHHHhhhccCccCCh----hHHHHHHHHHhcCCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHH
Q 012111 86 DEAIKQKKWQLALKIFGLLRQQQWYQARC----QTFTKLMVMLGKCKQPEQASLLFEVM--LSD--GLK-PSVDVYTALV 156 (471)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m--~~~--~~~-~~~~~~~~li 156 (471)
..+++.|+....+.+|+.+.+.+ ..|. ..|..|..+|.-.+++++|++....= ..+ |-+ -...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45789999999999999999876 4443 34667777777778899998764321 111 111 1222333444
Q ss_pred HHHHhcCCHHHHHHHHHHh----hcCCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 012111 157 SAYGQSGLLDEAFSTINDM----KSVSDCKPDVYTYSILIKSCTKFHR--------------------FDLIEKILAEMS 212 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~ 212 (471)
..+--.|.+++|+-.-.+- .+...-......+-.+...|...|. ++.|.+.|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4455556666665432211 1100001122333444555443322 233444443221
Q ss_pred ----HCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 213 ----YLGIE-CSAVTYNTIIDGYGKAKKFEEMESSFSAMV----ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283 (471)
Q Consensus 213 ----~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (471)
+.|-. .--..|..|...|.-.|+++.|+...+.-. +-+.-......+..+.+++.-.|+++.|.+.|+.-.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 12200 012345556666667788998887654332 112112234568888889999999999998887653
Q ss_pred h----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 284 L----MG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK----RF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 284 ~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (471)
. .| -.......-.|.+.|.-..++++|+.++.+-.. .+ ..-....+-+|..+|...|..++|+.+.+..+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 123445566778888888888888887764322 11 11234566778888888888888888777655
Q ss_pred Hc
Q 012111 354 HR 355 (471)
Q Consensus 354 ~~ 355 (471)
+.
T Consensus 343 ~~ 344 (639)
T KOG1130|consen 343 RS 344 (639)
T ss_pred HH
Confidence 43
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.10 E-value=0.01 Score=44.60 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012111 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSD---------------GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 178 (471)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 178 (471)
..++..++.++++.|+.+....+++..-.. ...|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456677777777777777777766554321 12344444444444444444444444444444444
Q ss_pred CCCCCCHHHHHHHHH
Q 012111 179 SDCKPDVYTYSILIK 193 (471)
Q Consensus 179 ~~~~~~~~~~~~ll~ 193 (471)
.+++.+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 444444444444444
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.19 Score=44.79 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++-.. + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34444556666777777776655543 46777777788888888888776665432 1 13456777777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 453 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 453 (471)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHH
Confidence 888887877777652 1 1 2334566777777777433
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.07 E-value=0.014 Score=50.37 Aligned_cols=86 Identities=9% Similarity=0.008 Sum_probs=37.7
Q ss_pred HhhcHHHHHHHHHHhhhccCccCC---hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQAR---CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL--KPSVDVYTALVSAYGQSGL 164 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~ 164 (471)
+.|++++|+..|+.+.+.. |.+ ..++..+...|...|++++|...|+.+...-. +.....+-.+...+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 3455555555555555432 211 13444445555555555555555555543211 0112233333344444455
Q ss_pred HHHHHHHHHHhhc
Q 012111 165 LDEAFSTINDMKS 177 (471)
Q Consensus 165 ~~~a~~~~~~~~~ 177 (471)
.+.|..+|+.+.+
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.11 Score=41.11 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012111 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248 (471)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (471)
++..-..|..++...|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 33333334444444444444444444443322223333444444444444444444444444433
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.99 E-value=0.0066 Score=40.77 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 404 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
..|.+.+++++|.++++++...+ +.+...+.....++.+.|++++|.+.+++.++..|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 35566677777777777766641 2244455556666667777777777777777666643
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.018 Score=44.74 Aligned_cols=90 Identities=12% Similarity=-0.024 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 412 (471)
..-+...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 334557788888888888877654 224555667777777788888888888776655443 444555667888888888
Q ss_pred HHHHHHHHHHHh
Q 012111 413 EKMGELFLTMKE 424 (471)
Q Consensus 413 ~~a~~~~~~~~~ 424 (471)
+.|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888876
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.31 Score=43.42 Aligned_cols=284 Identities=12% Similarity=0.075 Sum_probs=170.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCCH
Q 012111 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA--YGQSGLLDEAFSTINDMKSVSDCKPDVYT--YSILIKSCTKFHRF 201 (471)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~ 201 (471)
..|+-..|.++-.+-... +.-|....-.++.+ -.-.|+++.|.+-|+.|.. .|.... ...|.-...+.|+.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccH
Confidence 457777777776654422 22244444445543 3346899999999999986 233322 22233334567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHH--H-hcCCHHHHH
Q 012111 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT--LNSMISAY--G-NSGNIEKME 276 (471)
Q Consensus 202 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~--~-~~~~~~~a~ 276 (471)
+.|.++-+.....- +--...+...+...+..|+|+.|+++++.-.+..-+.++..- -..|+.+- . -.-+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88888887776542 223566778888899999999999999877665445555432 12222211 1 123455555
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 277 KWYNEFNLMGVKADIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
..-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+....|+.. .+..+.+.|+ .+..-+++..+.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHH
Confidence 55444433 344432 22334567888888888888888887775544432 1222344444 333333333322
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 012111 356 -GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGELFLTMKER 425 (471)
Q Consensus 356 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 425 (471)
.++| +......+..+....|++..|..--+...+. .|....|..|.+.-.. .||-.++...+.+.+..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2344 4556667777778888888887766666654 4566677766665543 48888888888777753
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.0039 Score=42.57 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 397 PFFNCIISAYGQAGDVEKMGELFLTMKER--HCV---PD-NITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|.+++++.++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45666777777777777777777766532 011 22 3456666677777777777777777776543
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.54 Score=45.63 Aligned_cols=338 Identities=12% Similarity=0.086 Sum_probs=171.1
Q ss_pred ccCCCchHHH-----HHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCC--HHHHHHHHHHHHhCCC
Q 012111 73 YKNLWPKPVL-----EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ--PEQASLLFEVMLSDGL 145 (471)
Q Consensus 73 ~~~~~~~~~~-----~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~ 145 (471)
+.+++.+.+. .+++.+...+.+..|+++-.++.... .-....|......+.+..+ -+++.+.+++=.....
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4455554443 45777888899999999998886532 1124566666666666532 2333333333332222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 012111 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK----PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 221 (471)
Q Consensus 146 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 221 (471)
-....|..+.+.....|+.+.|..+++.=.. .+.. .+..-+...+.-+...|+.+....++-.+.+.- +..
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~-~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPR-SGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCC-ccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 2445677777777788999999888764332 1110 122234455566677777777777776665431 111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HH----HhCCCCCCHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN--EF----NLMGVKADIQTLN 295 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~----~~~~~~~~~~~~~ 295 (471)
.|... ..+...|..+|.+..+..+ .. .+-..| +.++-.++...|. .. ...+..|+. .
T Consensus 580 ~l~~~------l~~~p~a~~lY~~~~r~~~----~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 580 SLFMT------LRNQPLALSLYRQFMRHQD----RA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHHH------HHhchhhhHHHHHHHHhhc----hh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 11111 1233345555555443221 10 011111 1111111111111 00 001112222 2
Q ss_pred HHHHHHHHcCCHH----------HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 012111 296 ILTKSYGRAGMYD----------KMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 364 (471)
Q Consensus 296 ~ll~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 364 (471)
...+.+.+..... +-+.+...+.. .+..-...+.+--+.-+...|+..+|.++-.+.+ -||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 2223333322211 11112222211 1111222234444555666677777777666554 5677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 365 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (471)
-.=+.+++..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++-+.... . -...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHh
Confidence 777777777777777666554433 2334556677777777777777776654321 1 344567777
Q ss_pred CCHHHHHHH
Q 012111 445 GMTEAAQNL 453 (471)
Q Consensus 445 g~~~~A~~~ 453 (471)
|++.+|.++
T Consensus 784 ~~~~eAad~ 792 (829)
T KOG2280|consen 784 GDVKEAADL 792 (829)
T ss_pred ccHHHHHHH
Confidence 777766544
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.0075 Score=47.23 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc----CCCCCCCHHHH
Q 012111 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----VSDCKPDVYTY 188 (471)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 188 (471)
+...++..+...|++++|..+.+.+....+- +...|..+|.+|...|+...|++.|+.+.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455555666667777777777766665322 566667777777777777777766665533 14566665553
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.79 E-value=0.032 Score=41.91 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012111 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 227 (471)
Q Consensus 148 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 227 (471)
|..++..+|.++++.|+.+....+++..- |+.++...- .+. .-......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHH
Confidence 34556666666666666666666665442 333221100 000 111223456677777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 012111 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 266 (471)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (471)
.+|+..|++..|.++.+...+..+++.+...|..|+.-.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777777766666666666666666543
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.77 E-value=0.27 Score=41.40 Aligned_cols=189 Identities=12% Similarity=0.032 Sum_probs=104.8
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccC-ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA-RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (471)
.++.+-.......+.|+|++|.+.|+.+..+.+..| ...+.-.++.++.+.+++++|+..+++....-..-....|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 345555666666789999999999999988753332 3456667777888889999999988888776332223344444
Q ss_pred HHHHHhc-------CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012111 156 VSAYGQS-------GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228 (471)
Q Consensus 156 i~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 228 (471)
|.+++.- .+...+.+.+..+.. ++.-|=...-...|...+..+... =...=..+.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~-------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKE-------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHH-------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHH
Confidence 5544421 122222222222221 111111111112222222211110 0000123567
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 229 GYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
.|.+.|.+..|..-++.|.+.. +.+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7888888888888888887763 222 23344556777777777777766655543
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.2 Score=47.52 Aligned_cols=55 Identities=5% Similarity=-0.041 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (471)
..+...+...+-+...+.-|.++|..|-.. ..+++.....+++++|..+-++..+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 344444444555556666777777665432 2456666777778887777766544
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.4 Score=42.77 Aligned_cols=294 Identities=10% Similarity=0.024 Sum_probs=186.4
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHH
Q 012111 151 VYTALVSAYGQ--SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILAEMSYLGIECSAV--TYN 224 (471)
Q Consensus 151 ~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~ 224 (471)
.|..|-.+++. .|+-..|.++-.+..+ -+..|......++.+ -.-.|+++.|.+-|+.|... |... -..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 34555554443 5677788777766543 233455555555544 34579999999999999852 2221 122
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH
Q 012111 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQT--LNILTKSY 301 (471)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~ll~~~ 301 (471)
.|.-.--+.|..+.|...-+...... +.-...+...+...|..|+++.|+++.+.-.... +.++..- -..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 33333456899999999888876653 3345678889999999999999999998875543 2344322 12222221
Q ss_pred H---HcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 302 G---RAGMYDKMRSVMDFMQKRFFFPTVVTY-NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 302 ~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
. -..+...|...-.+..+ +.|+...- -.-..++.+.|+..++-.+++.+-+....|+ +... ....+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC-
Confidence 1 12234445444443333 45554432 2334788999999999999999998755554 3322 22344554
Q ss_pred HHHHHHHHHHH---hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 012111 378 MKVDSILRQVE---NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN-ALGMTEAAQNL 453 (471)
Q Consensus 378 ~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~ 453 (471)
.+..-+++.. ..... +....-.+..+-...|++..|..--+...+ ..|....|..|.+.-. ..|+-.+++.+
T Consensus 310 -ta~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 -TALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred -cHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 3333333332 22222 566677788888899999988887776665 4788888888887654 44999999999
Q ss_pred HHHHHHhhh
Q 012111 454 ENKMIAMKE 462 (471)
Q Consensus 454 ~~~m~~~~~ 462 (471)
+-+.++.--
T Consensus 386 lAqav~APr 394 (531)
T COG3898 386 LAQAVKAPR 394 (531)
T ss_pred HHHHhcCCC
Confidence 888776543
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.67 E-value=0.24 Score=45.81 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMI 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 438 (471)
..+-..+..++.+.|+.++|.+.++++.+..+. -+..+...|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333455777777888888888888887754332 2444667788888888888888888888765333222 23444433
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHHhhhcCCCCcc
Q 012111 439 QAYNALGM---------------TEAAQNLENKMIAMKENSGKKLI 469 (471)
Q Consensus 439 ~~~~~~g~---------------~~~A~~~~~~m~~~~~~~~~~~~ 469 (471)
-.+...|+ -..|.+.+.++.+.+|...+-++
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 33332232 13456788888888887665443
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.64 E-value=0.063 Score=41.84 Aligned_cols=92 Identities=13% Similarity=-0.087 Sum_probs=66.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 83 EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162 (471)
Q Consensus 83 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (471)
...-.+...|++++|..+|..+--.+ +-+..-+..|..++-..+++++|...|......+.. |+..+-....++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 44455567888888888888887755 445555667777777778888888888876655432 555566677788888
Q ss_pred CCHHHHHHHHHHhhc
Q 012111 163 GLLDEAFSTINDMKS 177 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~ 177 (471)
|+.+.|...|+....
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888888776
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.32 Score=41.77 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=66.8
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 124 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 203 (471)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 203 (471)
....|++.+|..+|......... +...--.+..+|...|+.+.|..++..+.... -.........-|..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCCC
Confidence 34445555555555555444222 23344445555555555555555555544311 01111111122333333333333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 012111 204 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271 (471)
Q Consensus 204 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (471)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+++.-.-|...-..++..+.-.|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33333333332 2355555556666666666666666555554443233344455556666555553
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.3 Score=41.94 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 012111 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237 (471)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 237 (471)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556888888888888887632 33455666788888899999999999988765422222222233455555555555
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 012111 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -..|...-..++..+.-.|..+.+...+
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 555554444321 3366677778888888899998888777665543 2456667777888888777555443333
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.50 E-value=0.22 Score=36.99 Aligned_cols=62 Identities=15% Similarity=0.380 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
...+..+...|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455555566666666665555432 45555555666666666666666666666555554
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.50 E-value=0.22 Score=36.99 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 400 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
...+..+...|+-+.-.+++..+... -.+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444445555545555444421 23444444455555555555555555555555444
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.018 Score=39.26 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENS----DVI-LD-TPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
+++.+...|...|++++|+..|++..+. |.. |+ ..+++.+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666665554421 111 11 3456666666777777777777766654
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.1 Score=46.68 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
.++..+..++.+.+++..|++........+.. |....-.=..+|...|+++.|+..|+++.+ +.|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 45677777888888888888888888877655 666666667788888888888888888887 467665555444333
Q ss_pred -HhcCCH-HHHHHHHHHHHHhhhcC
Q 012111 442 -NALGMT-EAAQNLENKMIAMKENS 464 (471)
Q Consensus 442 -~~~g~~-~~A~~~~~~m~~~~~~~ 464 (471)
-+..+. +...++|..|...-...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 333333 33477888887665543
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.33 Score=46.22 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHhcCCHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSL-VSAYSKAGLIMKVDSILRQVENSD---VILDTPFFNCIISAYGQAGDVEK 414 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 414 (471)
....+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .......+--+...+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34667788888887775 5665555433 345566788888888887654311 11223345556667778889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHHHhhh
Q 012111 415 MGELFLTMKERHCVPDNITFATMI-QAYNALGMT-------EAAQNLENKMIAMKE 462 (471)
Q Consensus 415 a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~~~~ 462 (471)
|.+.|..+.+.. ..+..+|..+. -++...|+. ++|.+++.++.....
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999998888753 23444444444 334566777 788888877766554
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.30 E-value=0.17 Score=47.34 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=83.1
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 164 (471)
.+.++-.++++++.++.+.-.-.. .......+.++..+-+.|-.+.|+++-.+-.. -.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 344455677777666654111111 11134466777777777777777766543221 2334456677
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (471)
++.|.++.++. .+...|..|.....+.|+++.|++.|.+... +..|+-.|.-.|+.+...++.+
T Consensus 334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 77776655432 3555677777777777777777777766442 3455556666677666666665
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (471)
.....+ -++....++...|+.++..+++.+
T Consensus 398 ~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERG-------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 554443 144444555555666666655544
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.26 E-value=0.12 Score=43.79 Aligned_cols=104 Identities=13% Similarity=0.255 Sum_probs=66.1
Q ss_pred CChhHHHHHHHHHhc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHH
Q 012111 112 ARCQTFTKLMVMLGK-----CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 186 (471)
Q Consensus 112 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (471)
-|-..|...+..+.. .+.++-.-..+..|.+.|+..|..+|+.|+..+-+.. ..|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk-----------------fiP~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK-----------------FIPQNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------------cccHHH
Confidence 344556666665543 2456666667777777777777777777776653321 122211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012111 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 235 (471)
Q Consensus 187 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 235 (471)
+....-.|- .+-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1235588999999999999999999999999988775
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.11 Score=44.08 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVP-DNITFATMI 438 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~ 438 (471)
.|+.-+.. .+.|++..|...|...++..+.- ....+--|..++...|++++|..+|..+.+. +-.| -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444333 34555666666666666543221 1223444666677777777777777666653 1112 235556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 439 QAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
.+..+.|+.++|...|+++++..|+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 666777777777777777777666543
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.25 E-value=0.35 Score=46.01 Aligned_cols=180 Identities=12% Similarity=0.060 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh----cCC
Q 012111 95 QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV------DVYTALVSAYGQ----SGL 164 (471)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~----~~~ 164 (471)
.--.-+|..+..- +||. +..++...+=.|+-+.+++.+....+.+--..+ -.|+.++..++. ...
T Consensus 174 ~~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 174 YFGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 3445566666654 3554 577888888889999999999887664321122 235555554444 347
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILI-KSCTKFHRFDLIEKILAEMSYLG---IECSAVTYNTIIDGYGKAKKFEEME 240 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (471)
.+.|.++++.+... -|+...|...- +.+...|+++.|.+.|+...... .+.....+--+.-.+.-.++|++|.
T Consensus 249 ~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 249 LEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 88999999999874 46766654433 45677899999999999765321 1223344555667788889999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHh
Q 012111 241 SSFSAMVESGGCHPDIFTLNSMISA-YGNSGNI-------EKMEKWYNEFNL 284 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~ 284 (471)
+.|..+.+.. .-+...|.-+..+ +...|+. ++|.++|.+...
T Consensus 326 ~~f~~L~~~s--~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKES--KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcc--ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999998864 3344455554433 4456666 889999988743
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.24 E-value=0.1 Score=47.81 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENS 390 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 390 (471)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567788888888888888888888887775 4543 35788888888888888888888888775
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=1.4 Score=43.50 Aligned_cols=184 Identities=12% Similarity=0.161 Sum_probs=114.2
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCC--hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR--CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVY 152 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 152 (471)
.+.+.++...|+.+.+..-++.|+.+-+.-.. .++ ..........+.+.|++++|...|-+-+.. +.|
T Consensus 331 ~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~----- 400 (933)
T KOG2114|consen 331 ELIEKDLETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP----- 400 (933)
T ss_pred eeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----
Confidence 34566778888888999999999887654432 222 233445555667889999998888765532 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012111 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 153 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 232 (471)
..+|.-|....+...-...++.+.+ .|+ .+...-..|+.+|.+.++.+...+..+.-. .|.. ..-....+..+.+
T Consensus 401 s~Vi~kfLdaq~IknLt~YLe~L~~-~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 401 SEVIKKFLDAQRIKNLTSYLEALHK-KGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH-ccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 2345555566666666777777776 343 445555678889999998887766665544 2211 1113445666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 282 (471)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (471)
.+-.++|.-+-..... .......+ +-..+++++|+++++.+
T Consensus 476 snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 6777777665544421 22233333 34667888888888765
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.17 E-value=0.66 Score=39.13 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDN---ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.+.+-|.+.|.+-.|..-+++|++. .+-+. ..+-.+..+|...|-.++|.+.-+-+....|+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 3456778888888888888888876 33222 34445667888888888887776655555444
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.15 E-value=0.44 Score=36.86 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 83 EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162 (471)
Q Consensus 83 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (471)
.++..+.+.+.+.....+++.+...+ +.+...++.++..|++.+ .......+.. . .+......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence 44444445667777777777777665 355666777777776553 2333333331 1 1222233455666666
Q ss_pred CCHHHHHHHHHHhh
Q 012111 163 GLLDEAFSTINDMK 176 (471)
Q Consensus 163 ~~~~~a~~~~~~~~ 176 (471)
+.++++.-++.++.
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 66666666665543
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.13 Score=47.18 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCCh---hHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARC---QTFTKLMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
++..+.+.-..+.+.|++++|+..|+.+.+.+ |.+. .+|..+..+|...|++++|+..+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444455555555555555554432 1111 1245555555555555555555555444
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.22 Score=44.72 Aligned_cols=139 Identities=10% Similarity=0.007 Sum_probs=95.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 342 (471)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (471)
.+.+.+.|++..|..-|+..+.. +. |...-+.++...... .-..++..+.-++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 46777888888888877776431 00 011111121111111 1334677788888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK-MGELFLT 421 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 421 (471)
..|++.-.+.+..+ ++|...+-.=..++...|+++.|+..|+.+.+..+. |..+-+.|+.+-.+..+..+ ..++|..
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888875 567888888889999999999999999999988766 66676777766665555444 4778888
Q ss_pred HHh
Q 012111 422 MKE 424 (471)
Q Consensus 422 ~~~ 424 (471)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 875
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.03 E-value=0.5 Score=44.40 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=72.4
Q ss_pred HHccCCHHHHHHHHH--HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 012111 230 YGKAKKFEEMESSFS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307 (471)
Q Consensus 230 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (471)
..-.++++++.+... .+... + +....+.++..+.+.|..+.|+++..+-. .-.....+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~--i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN--I--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhccc--C--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 344556666555553 11111 1 13345556666666666666665443321 112334455666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387 (471)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 387 (471)
+.|.++.+.. .+...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 6665543321 2455666666666666666666666655432 445555555666666655555555
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421 (471)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 421 (471)
...|- ++....++.-.|+.++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 54431 34444445555666666555543
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.02 E-value=1.5 Score=41.75 Aligned_cols=338 Identities=12% Similarity=0.107 Sum_probs=174.4
Q ss_pred hcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 012111 92 KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG-QSGLLDEAFS 170 (471)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~ 170 (471)
...+.+..++..+... +|--..-|......=.+.|..+.+.++|++... |++.+...|.....-+. ..|+.+....
T Consensus 59 ~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3445666677777654 243344566667777788999999999998875 46667777777665544 4567778888
Q ss_pred HHHHhhcCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---cc------CCHHHHH
Q 012111 171 TINDMKSVSDCK-PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG---KA------KKFEEME 240 (471)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---~~------~~~~~a~ 240 (471)
.|+.....-|.. .....|...|..-...+++.....++++.++. ....|+....-|. .. ...+++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~ 211 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELI 211 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHH
Confidence 888887754433 23445777777777788888999999888864 2222332222221 11 1222222
Q ss_pred HHHHHHHHc---CCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012111 241 SSFSAMVES---GGCHPDIFTLNSMISAYG-NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316 (471)
Q Consensus 241 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 316 (471)
++-...... ....+.......-+.--. ..+..+++.....+. ...--.++............|+.
T Consensus 212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhh
Confidence 222211110 000000001110000000 000011111100000 00001112222222233333333
Q ss_pred HHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 317 MQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 317 ~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
-.+.- ..++..+|..-+..-...|+.+.+.-+|++..-. +..-...|-..+......|+.+.|..++....+
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 22221 1224456777777777788888888888776532 222334555556666666888888877777665
Q ss_pred CCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 012111 390 SDVILDTPFFNCIISA-YGQAGDVEKMGELFLTMKERHCVPDNITF-ATMIQAYNALGMTEAAQ 451 (471)
Q Consensus 390 ~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~ 451 (471)
...+ +......+-.. .-..|+++.|..+++...+. + |+.... ..-+....+.|+.+.+.
T Consensus 360 i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 360 IHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 5433 22222222222 23457888888888888765 3 544322 22334455666666665
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.23 Score=36.79 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=57.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcCHHH---HHHHHHHHHhcC
Q 012111 335 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPF---FNCIISAYGQAG 410 (471)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~---~~~l~~~~~~~g 410 (471)
++...|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|++-+++..+. |.. .... |..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456677788888887777664 2335677777777777778888877777776653 222 2222 222233455667
Q ss_pred CHHHHHHHHHHHHhCC
Q 012111 411 DVEKMGELFLTMKERH 426 (471)
Q Consensus 411 ~~~~a~~~~~~~~~~~ 426 (471)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777776654
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.99 E-value=0.25 Score=37.61 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=66.0
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccC-ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA-RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (471)
..++..+........+.|++++|++.|+.+..+.+..+ ...+--.++.++.+.+++++|...+++.++..+.-.-.-|.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 34556677777788899999999999999998853333 34667788999999999999999999999875443334455
Q ss_pred HHHHHHHhcC
Q 012111 154 ALVSAYGQSG 163 (471)
Q Consensus 154 ~li~~~~~~~ 163 (471)
..+.+++...
T Consensus 87 ~Y~~gL~~~~ 96 (142)
T PF13512_consen 87 YYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.46 Score=41.52 Aligned_cols=153 Identities=7% Similarity=0.016 Sum_probs=104.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCH
Q 012111 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI----VIETFGKAGHI 342 (471)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~ 342 (471)
-..|++.+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++...|.. ..-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567777887788887764 4777778888888888889888888888877654 2334433333 33445578889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVILDTPFFNCIISAYGQAGDVEKMGEL 418 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 418 (471)
++|.+.-++..+.+ +.|......+...+.-.|+..++.+++..-.+. .+. -..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ml-asHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWML-ASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHH-HhhhhHHHHHhhhcccchhHHHHH
Confidence 99999888887764 456777777888888889999998887765432 111 111222333345566889999999
Q ss_pred HHHHH
Q 012111 419 FLTMK 423 (471)
Q Consensus 419 ~~~~~ 423 (471)
|++=+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87543
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.88 E-value=0.92 Score=38.34 Aligned_cols=223 Identities=12% Similarity=-0.040 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 199 HRFDLIEKILAEMSYLGIE-CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 277 (471)
Q Consensus 199 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 277 (471)
+....+...+......... .....+......+...+.+..+...+...............+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555544221 124555666666666677776666666664310023344455555556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 278 WYNEFNLMGVKADIQTLNILTK-SYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354 (471)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (471)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665533222 111222222 55666666666666666543211 01222233333334455566666666666555
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 355 RGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 355 ~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.. .. ....+..+...+...++.+.+...+......... ....+..+...+...|..+.+...+.....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 11 2444555555555555666666666555544322 122333333333344455555555555554
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.78 E-value=1.2 Score=39.11 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYD---KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 369 (471)
++..++.+|...+..+ +|..+++.+...... .+..+-.-+..+.+.++.+.+.+.+.+|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4556666666665543 455566666444322 24444455566666777888888888887752 212233444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCcCHH-HHHH-HHH---HHHhcCC------HHHHHHHHHHHHh-CCCCCCHHHH
Q 012111 370 AY---SKAGLIMKVDSILRQVENSDVILDTP-FFNC-IIS---AYGQAGD------VEKMGELFLTMKE-RHCVPDNITF 434 (471)
Q Consensus 370 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~g~------~~~a~~~~~~~~~-~~~~p~~~~~ 434 (471)
.+ ... ....+...++.+....+.|... .... ++. ...+.++ ++...++++.... .+.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 332 3345555555555443443432 1111 111 1111111 4444444543322 1223344332
Q ss_pred H---HHH----HHHHhcCCHHHHHHHHHHHH
Q 012111 435 A---TMI----QAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 435 ~---~l~----~~~~~~g~~~~A~~~~~~m~ 458 (471)
. +++ ..+.+.+++++|.++++-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 333 34567899999999988544
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.70 E-value=1.6 Score=39.68 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=62.2
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCc--cCChhHHHHHHHHHhc---CCCHHHHHHHHHHHHhCCCCCCH
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWY--QARCQTFTKLMVMLGK---CKQPEQASLLFEVMLSDGLKPSV 149 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~ 149 (471)
-++++.+...+-.+....+|+..+++.+.+...... ..+...-....-++.+ .|+.++|++++..+......+++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 456677777777777778888888888887764211 1112222233334455 67888888888776555556677
Q ss_pred HHHHHHHHHHHhc---------CCHHHHHHHHHHhh
Q 012111 150 DVYTALVSAYGQS---------GLLDEAFSTINDMK 176 (471)
Q Consensus 150 ~~~~~li~~~~~~---------~~~~~a~~~~~~~~ 176 (471)
.+|..+.+.|-.. ...++|+..|.+.-
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 7777777665321 12455666665543
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.21 Score=42.36 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 012111 199 HRFDLIEKILAEMSYLGI--ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD-IFTLNSMISAYGNSGNIEKM 275 (471)
Q Consensus 199 ~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 275 (471)
|++..|.+.|...++... .-....+..|..++...|++++|..+|..+.+..+-.|. ...+-.|.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 334444444444444320 111233344555555555555555555555444322221 23444444445555555555
Q ss_pred HHHHHHHHh
Q 012111 276 EKWYNEFNL 284 (471)
Q Consensus 276 ~~~~~~~~~ 284 (471)
..+|+++.+
T Consensus 235 ~atl~qv~k 243 (262)
T COG1729 235 CATLQQVIK 243 (262)
T ss_pred HHHHHHHHH
Confidence 555555543
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.68 E-value=0.6 Score=34.69 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=51.7
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcC
Q 012111 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAG 305 (471)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~ 305 (471)
++...|+.+.|++.|.+.... .+.....||.-..++.-.|+.++|+.-+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345566777777777666654 24455567777777777777777776666665432222222 2222233455566
Q ss_pred CHHHHHHHHHHHHhCC
Q 012111 306 MYDKMRSVMDFMQKRF 321 (471)
Q Consensus 306 ~~~~a~~~~~~~~~~~ 321 (471)
+-+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.55 E-value=1.5 Score=38.54 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=65.1
Q ss_pred HHHhhcHHHHHHHHHHhhhcc-CccCCh-----hHHHHHHHHHhcCC-CHHHHHHHHHHHHhC--------CCCCC----
Q 012111 88 AIKQKKWQLALKIFGLLRQQQ-WYQARC-----QTFTKLMVMLGKCK-QPEQASLLFEVMLSD--------GLKPS---- 148 (471)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~---- 148 (471)
..++|+.+.|..++.++.... ...|+. ..+..+.....+.+ +++.|...+++..+. ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357889999999998887643 223332 12223333334445 777777766654432 11122
Q ss_pred -HHHHHHHHHHHHhcCCH---HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012111 149 -VDVYTALVSAYGQSGLL---DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214 (471)
Q Consensus 149 -~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 214 (471)
..++..++.+|...+.. ++|..+++.+....+- .+.++..-+..+.+.++.+.+.+++.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 22444555556555543 3445555555442222 2333434445555556666666666666554
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.53 E-value=1.9 Score=39.54 Aligned_cols=116 Identities=12% Similarity=0.036 Sum_probs=69.8
Q ss_pred hcCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCcC----HHHHHHHHH
Q 012111 338 KAGH-IEKMEEYFKKMKHRGMKP-NSITYCSLV----SAYSK---AGLIMKVDSILRQVENSDVILD----TPFFNCIIS 404 (471)
Q Consensus 338 ~~g~-~~~a~~~~~~m~~~~~~p-~~~~~~~li----~~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~ 404 (471)
+.|. -++|+.+++....- .+ |...-+.+. .+|.. ...+.+-..+-+-+.+.|+.|- ...-|.|..
T Consensus 391 ~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 3443 66777777777653 22 322222211 22221 2334444444455556666643 234444444
Q ss_pred H--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 405 A--YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 405 ~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
+ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3 4456888887766555555 7899999999998889999999999888764
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.52 E-value=0.21 Score=43.05 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-----RHCVPDNITFATM 437 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 437 (471)
++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|++.|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4555666666666666666666666666555 666666677777777776666666665543 4666666666555
Q ss_pred HHH
Q 012111 438 IQA 440 (471)
Q Consensus 438 ~~~ 440 (471)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.48 E-value=0.035 Score=32.75 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 399 FNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+..+...|...|++++|+++|+++.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.47 E-value=0.05 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 433 TFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
+|..|...|.+.|++++|.+++++++.....+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 355667777777777777777777665554443
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=2.1 Score=39.21 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (471)
...|...+....+...++.|..+|-++.+.| +.++..++++++..++ .|+...|..+|+.-...-.. +...-+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 3456677777777777888888888888777 5567777777777654 56777788887764443222 2222344556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 405 AYGQAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
-+...++-..|..+|+..+++ +.-+ ...|..+|..-..-|+...+..+-++|...-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 667778888888888866543 3333 467777887777778887777777777665554
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=95.39 E-value=0.94 Score=41.88 Aligned_cols=147 Identities=9% Similarity=-0.019 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012111 306 MYDKMRSVMDFMQK-RFFFPT-VVTYNIVIETFGKA---------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 374 (471)
Q Consensus 306 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 374 (471)
..+.|..+|.+... ....|+ ...|..+..++... ....+|.++.++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 35678888888772 223444 34555555444322 23456777777777765 45788888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 012111 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI---TFATMIQAYNALGMTEAAQ 451 (471)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~ 451 (471)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+. .|... .....+..|+..+ .++|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 8899999999999887765 5666666666777789999999999987763 45433 2223334555544 67777
Q ss_pred HHHHHH
Q 012111 452 NLENKM 457 (471)
Q Consensus 452 ~~~~~m 457 (471)
+++-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 776543
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.36 E-value=4.1 Score=42.25 Aligned_cols=131 Identities=11% Similarity=0.180 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccC--ccCChhHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQW--YQARCQTFTKLMVMLGKC-KQPEQASLLFEVMLSDGLKPSVDVYTA 154 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (471)
...++..++.++...++.+|+++-++-+-.-. +..+...|..-+.++.+. ++.+-...++..+....+ +...|..
T Consensus 677 R~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDv--tk~~y~~ 754 (1265)
T KOG1920|consen 677 RILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDV--TKTMYSS 754 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchh--hhhhccc
Confidence 34566888888899999988776655432210 122344444444455443 455555555555553321 1111211
Q ss_pred HH----HHHHhc----CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 012111 155 LV----SAYGQS----GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH--RFDLIEKILAEMSY 213 (471)
Q Consensus 155 li----~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~ 213 (471)
.. ..|... +..+...+.+..... ...|+ .....+|.++.+.+ ..+.+++...+...
T Consensus 755 ~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~--~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 755 TSGSGKQVYMSRDPYDNKVNSVCDAVRNALE--RRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cccccceeEEeccchhhHHHHHHHHHHHHHh--hcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 11 111111 223333444444333 12455 44566777777776 66677776666654
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.36 E-value=0.2 Score=42.57 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341 (471)
Q Consensus 309 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 341 (471)
-++.++++|...|+.||..+-..++.++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 355566666666666666666666666655543
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.35 E-value=0.96 Score=34.92 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=17.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338 (471)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (471)
+..+...+.......+++.+...+. .+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333344444444444444444432 234444444444444
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.31 E-value=0.94 Score=34.60 Aligned_cols=75 Identities=11% Similarity=0.024 Sum_probs=44.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
....+.|++++|.+.|+.+...-. +-....--.++.++.+.+++++|...++++++.++.....-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344556777777777777665510 112344556667777777777777777777766655444445555555443
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.26 E-value=1.2 Score=35.34 Aligned_cols=134 Identities=12% Similarity=0.117 Sum_probs=71.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 134 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213 (471)
Q Consensus 134 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (471)
.+.+..+.+.|++|+...+..+++.+.+.|++.....++. .++-+|.......+-.+.. ....+.++=-+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 3455556667778888888888888888887666555544 3444554444333322222 22223333323322
Q ss_pred C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 214 L-GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 214 ~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
. | ..+..+++.+...|++-+|.++.+...... . .....++.+..+.+|...-..+++-+..
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~--~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVD--S---VPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc--c---CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1 124556677777788877777776642221 1 1224455555566665555555544433
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.26 E-value=1.3 Score=41.23 Aligned_cols=169 Identities=12% Similarity=0.105 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCCh-hHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARC-QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
....++...-+..+.+.-++.-.++.+.. |+. ..|..|.. -......++.+++++..+.|-. .+.
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~---pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg----- 235 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEIN---PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLG----- 235 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhc-----
Confidence 44566777778888888888888887753 443 33333322 2345678888888887764311 111
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHH
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE-CSAVTYNTIIDGYGKAKKFE 237 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~ 237 (471)
+....+..-..++.+.. ....+-..+-..+..++-+.|+.++|.+.+.+|.+.... -+..+...|+.++...+.+.
T Consensus 236 --~s~~~~~~g~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 236 --KSQFLQHHGHFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred --hhhhhhcccchhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 00000000011111221 222333344445666677889999999999988765312 23456778899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 012111 238 EMESSFSAMVESGGCHPDIFTLNSMISA 265 (471)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (471)
++..++.+..+....+.-...|+..+-.
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 9999988874332112234456655433
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.18 E-value=0.83 Score=35.63 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=65.4
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012111 327 VTYNIVIET---FGKAGHIEKMEEYFKKMKHRGMKPNSITY-CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 402 (471)
Q Consensus 327 ~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (471)
.+.+.||.. -...++.+++..++..+.-. .|..... ..-...+...|++.+|..+|+.+.+.. |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 344444443 35678889999999888874 5543332 223345678899999999999987654 233344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 450 (471)
+..|....+-..=...-+++.+.+- |+.+- .+++.+....+...|
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~--d~~a~-~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGA--DPDAR-ALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCC--ChHHH-HHHHHHHHhccccch
Confidence 5555444332233333445555532 33332 344555444444444
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.16 E-value=0.081 Score=28.85 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..|..+...+...|++++|.+.++++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35666777888888888888888888887775
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.03 E-value=0.081 Score=31.15 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 401 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 401 (471)
++..+...|...|++++|.++|+++.+..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 3445555566666666666666666555444 4444433
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=1.4 Score=34.76 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012111 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (471)
..|.++......+.+...|-+.....-..|.-+-.+.|++.+|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444444333333333334444444455555555555555543
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.89 E-value=0.1 Score=28.54 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.+|..+...+...|++++|...++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777778888888888887777764
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.84 E-value=1.9 Score=38.26 Aligned_cols=227 Identities=10% Similarity=0.049 Sum_probs=97.0
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----HHcCCCCCCHHHHHHHHHHHHhc
Q 012111 196 TKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM----VESGGCHPDIFTLNSMISAYGNS 269 (471)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~ 269 (471)
....+.++++..+..-... ...-...++..+..+.++.|.+++++..--.. .+.....--...|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666554432 11112345555666666666666655432221 11100000112333344444444
Q ss_pred CCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcC
Q 012111 270 GNIEKMEKWYNEFNLM-GVKA---DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-----FPTVVTYNIVIETFGKAG 340 (471)
Q Consensus 270 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g 340 (471)
-++.+++.+-..-... |..+ .......+..++...+.++++++.|+...+... ......|..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444433332211 1111 112233345555555666666666655443211 111234555666666666
Q ss_pred CHHHHHHHHHHHHHc----CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCc-CHHHHHHHHHHH
Q 012111 341 HIEKMEEYFKKMKHR----GMKPNSITY-----CSLVSAYSKAGLIMKVDSILRQVEN----SDVIL-DTPFFNCIISAY 406 (471)
Q Consensus 341 ~~~~a~~~~~~m~~~----~~~p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~ 406 (471)
++++|.-+..+..+. ++.--..-| ..+.-++...|....|.+..++..+ .|-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666665555443321 211111112 2233344555555555555554332 22111 112233444555
Q ss_pred HhcCCHHHHHHHHHHH
Q 012111 407 GQAGDVEKMGELFLTM 422 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~ 422 (471)
...|+.+.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 5566666665555544
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.76 E-value=1.7 Score=38.66 Aligned_cols=229 Identities=9% Similarity=0.013 Sum_probs=122.5
Q ss_pred HHhhcHHHHHHHHHHhhhcc-CccCChhHHHHHHHHHhcCCCHHHHHHHH----HHHHhCC-CCCCHHHHHHHHHHHHhc
Q 012111 89 IKQKKWQLALKIFGLLRQQQ-WYQARCQTFTKLMVMLGKCKQPEQASLLF----EVMLSDG-LKPSVDVYTALVSAYGQS 162 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~-~~~~~~~~~~li~~~~~~ 162 (471)
....+..+|+..+.....+- ..-.-..+|..+..+.+..|.+++++..- +...+.. -..--..|-.+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665554431 00112345566666777777776665422 2111110 011123455555555555
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccC
Q 012111 163 GLLDEAFSTINDMKSVSDCKPDV---YTYSILIKSCTKFHRFDLIEKILAEMSYLGI-----ECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~l~~~~~~~~ 234 (471)
-++.+++.+-..-....|..|.. ....++..++...+.++++++.|+...+.-. .....++..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 56666666555444433433321 2233355566666778888888877654311 122456777888888888
Q ss_pred CHHHHHHHHHHHHH---cCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHH
Q 012111 235 KFEEMESSFSAMVE---SGGCHPDIFTLN-----SMISAYGNSGNIEKMEKWYNEFNL----MGV-KADIQTLNILTKSY 301 (471)
Q Consensus 235 ~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~ll~~~ 301 (471)
++++|.-+..+..+ ..++..-..-|. .|..++...|....|.+.-++..+ .|- .........+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 88887766554432 211111111222 233456667777667666665533 232 12234456677788
Q ss_pred HHcCCHHHHHHHHHHH
Q 012111 302 GRAGMYDKMRSVMDFM 317 (471)
Q Consensus 302 ~~~~~~~~a~~~~~~~ 317 (471)
...|+.+.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8888888887777654
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=1.3 Score=43.76 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=69.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 012111 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307 (471)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (471)
..+.+.|++++|...|-+.... +.|. .+|.-|...........+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 3445567777776666555432 2332 2344444555555566666666666633 333445566777777776
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387 (471)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 387 (471)
++-.+..+... .|.. ..-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|.++++.+
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66665555433 1111 01123344455555555555544433221 22222222 23456666666666543
No 271
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=5.2 Score=39.32 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=167.0
Q ss_pred hCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHC
Q 012111 142 SDGLKPSVDVYTA-----LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR--FDLIEKILAEMSYL 214 (471)
Q Consensus 142 ~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~ 214 (471)
..|++.+..-|.. +|+-+...+.+..|+++-..+.... .-+...|.....-+.+..+ -+.+.+.+++=.+.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 4477777766654 5666777888999999888776411 1125566666666665532 22333333332222
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 012111 215 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH---PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------ 285 (471)
Q Consensus 215 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 285 (471)
.. .....|..+.+-....|+.+-|..+++.=...+... .+..-+...+.-+...|+.+-...++-.+...
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 22 344567777777777889888888775432211000 11223444555666677777666665554332
Q ss_pred -----CCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHH--HH----HhCCCCCCHHHHHHHHHHHHhcCCH----
Q 012111 286 -----GVKADIQTLNILTKS--------YGRAGMYDKMRSVMD--FM----QKRFFFPTVVTYNIVIETFGKAGHI---- 342 (471)
Q Consensus 286 -----~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~--~~----~~~~~~~~~~~~~~li~~~~~~g~~---- 342 (471)
..+.....|.-+++- +...++-.++...|. .. ...+..|+. ......+.+....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 112222222222221 111111112211111 10 001222222 2233344433321
Q ss_pred ------HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012111 343 ------EKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415 (471)
Q Consensus 343 ------~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 415 (471)
.+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+++ .||...|-.-+.+++..++|++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1112222222221 333444556666777888899999998877665 36888999999999999999988
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 416 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
+++-+.+. .+.-|.-.+.+|.+.|+.++|.+++-+.-
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 87766554 25566778899999999999999886653
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.53 E-value=7 Score=40.70 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL----NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338 (471)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (471)
++.-.+.|.+.+|+.++ .|+...+ .+..+.+.....+++|.-.|+..-+ ..-.+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 33334555555555544 4455444 4444445566777777777665432 1234677788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSI--TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 416 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 416 (471)
+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-++..+.... ....+..|++...|++|+
T Consensus 978 ~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHH
Confidence 88888888887766532 1222 2256777778888888888877766542 123344566667777777
Q ss_pred HHHHHHH
Q 012111 417 ELFLTMK 423 (471)
Q Consensus 417 ~~~~~~~ 423 (471)
++.....
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 7765443
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.45 E-value=1.9 Score=33.75 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=9.3
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 012111 159 YGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~ 177 (471)
++..|++.+|+.+|+.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.36 E-value=4.1 Score=37.32 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012111 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 248 (471)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (471)
..+.-+.|+++...+........ .++...+..+... ..++++++...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566777777755555444422 2234444444333 66777777777766644
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=6.3 Score=38.98 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCccC---ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 82 LEALDEAIKQKKWQLALKIFGLLRQQQWYQA---RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 82 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
..-++-+.+.+.+++|+.+-+..... .+ -.......+..+...|++++|-...-.|... +..-|...+..
T Consensus 360 ~Dhi~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~ 432 (846)
T KOG2066|consen 360 EDHIDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFK 432 (846)
T ss_pred chhHHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHH
Confidence 45678888999999999988776553 33 3456788888899999999999999888854 66777777777
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 197 (471)
+...++......+ +.. ..-..+...|..++..+..
T Consensus 433 f~e~~~l~~Ia~~---lPt-~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 433 FAELDQLTDIAPY---LPT-GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccccccchhhcc---CCC-CCcccCchHHHHHHHHHHH
Confidence 7777665543332 332 2223456677777777766
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.20 E-value=3.8 Score=36.32 Aligned_cols=132 Identities=11% Similarity=0.178 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC--
Q 012111 273 EKMEKWYNEFNLMGVKADIQTLNILTKSYGR--AG----MYDKMRSVMDFMQKRFF---FPTVVTYNIVIETFGKAGH-- 341 (471)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 341 (471)
++...+++.|.+.|+.-+..+|.+..-.... .. ....|..+++.|.+.-+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777776666543333322 12 24567778888877542 2233445554433 2232
Q ss_pred --HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012111 342 --IEKMEEYFKKMKHRGMKPNS--ITYCSLVSAYSKAGL--IMKVDSILRQVENSDVILDTPFFNCIISAY 406 (471)
Q Consensus 342 --~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (471)
.+.+..+|+.+.+.|+..+. .....++..+..... +.++.++++.+.+.|+++....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35667777777777765532 233333333322222 446777888888888887777776655443
No 277
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.96 E-value=5.1 Score=36.97 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=74.7
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCCh-----hH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARC-----QT-FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA--YG 160 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~ 160 (471)
-+++++.+|.++|.++.+.. ..+. +. -+.++.+|. ..+.+.....+..+.+. .| ...|-.+..+ +.
T Consensus 17 qkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 46777888888888776653 2221 22 234444444 34555555555555443 11 2223333332 34
Q ss_pred hcCCHHHHHHHHHHhhcCC-CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 012111 161 QSGLLDEAFSTINDMKSVS-DCK------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG----IECSAVTY 223 (471)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~-~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~ 223 (471)
+.+.+.+|++.+....... +.. +|...=+..+..+...|++.++..+++++...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 5677777777776655420 111 122223445566777888888887777775543 33677777
Q ss_pred HHHHHHHHc
Q 012111 224 NTIIDGYGK 232 (471)
Q Consensus 224 ~~l~~~~~~ 232 (471)
+.++-.+.+
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 765554443
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=93.84 E-value=1.8 Score=40.10 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 130 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKIL 208 (471)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 208 (471)
..+|.++-+...+.+.. |......+..+..-.++++.|..+|++.... .|| ..+|......+.-.|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444444444322 4444444444444444455555555554442 222 122222222333345555555555
Q ss_pred HHHH
Q 012111 209 AEMS 212 (471)
Q Consensus 209 ~~~~ 212 (471)
++..
T Consensus 396 ~~al 399 (458)
T PRK11906 396 DKSL 399 (458)
T ss_pred HHHh
Confidence 5543
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.62 E-value=0.94 Score=39.23 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc----CCCCCCCHHHH
Q 012111 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----VSDCKPDVYTY 188 (471)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 188 (471)
-..++..++..+...|+++.+...++.+...... +...|..+|.+|.+.|+...|+..|+++.+ ..|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3567889999999999999999999999987544 788999999999999999999999988765 36788988888
Q ss_pred HHHHHHHHh
Q 012111 189 SILIKSCTK 197 (471)
Q Consensus 189 ~~ll~~~~~ 197 (471)
.........
T Consensus 231 ~~y~~~~~~ 239 (280)
T COG3629 231 ALYEEILRQ 239 (280)
T ss_pred HHHHHHhcc
Confidence 777777433
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=4.8 Score=35.52 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=52.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHH
Q 012111 233 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDK 309 (471)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~ 309 (471)
.|++.+|-..++++.+. .+.|...+...-.+|...|+.+.-...++++... +++..+..-..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34555555555555544 2444444554555555555555555555554322 111111122222233344555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 351 (471)
Q Consensus 310 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (471)
|++.-++..+.+.. |.-.-.+....+...|++.++.+++.+
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555544443221 333333444444455555555555443
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=3.8 Score=34.38 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENS---DVILDTPFFNCIISAYGQAGDVEKMGELF 419 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 419 (471)
|...|-.+....++..|...++.-.+. .-.-+..+...|+.+|- .||.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 344444455556666676666653321 11224556666666653 46666655543
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.47 E-value=0.87 Score=31.77 Aligned_cols=61 Identities=10% Similarity=0.213 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
.-++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+..+.+ +..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3345555566666666677777777777777777777777777665532 222334454444
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.45 E-value=8.4 Score=37.84 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=156.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHc
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILI----KS-CTKFHRFDLIEKILAEMSY-------LGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll----~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~ 232 (471)
...|...++...+. | +...-..+. .+ +....|.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~-g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhh-c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 46788888887763 2 222222222 22 4456789999999998877 55 33345667777766
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 012111 233 AK-----KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---- 302 (471)
Q Consensus 233 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---- 302 (471)
.. +.+.|..++....+.+ .|+.......+..... ..+...|.++|......|. ...+-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 43 6778999999887765 5665444333332222 2467899999999988772 222323333332
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH---Hh----c
Q 012111 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAY---SK----A 374 (471)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~---~~----~ 374 (471)
-..+...|..++.+..+.|........ ..+..+.. ++++.+.-.+..+...|.+. ..+-...+ ... .. .
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccc
Confidence 234678899999998888732222222 22233333 77777777777777766432 22211111 111 11 1
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCC
Q 012111 375 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA----GDVEKMGELFLTMKERHCVPDNITFATMIQ----AYNALGM 446 (471)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~ 446 (471)
.+.+.+...+.+....| +......|...|... .+++.|...+......+ ....|+ +.. +.....
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-
Confidence 24556666676666554 455555555555443 34777888787777654 222222 221 112223
Q ss_pred HHHHHHHHHHHHHhhh
Q 012111 447 TEAAQNLENKMIAMKE 462 (471)
Q Consensus 447 ~~~A~~~~~~m~~~~~ 462 (471)
+..|.++++.....+.
T Consensus 525 ~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 525 LHLAKRYYDQASEEDS 540 (552)
T ss_pred hHHHHHHHHHHHhcCc
Confidence 6778888877766543
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.33 E-value=0.12 Score=28.37 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 012111 395 DTPFFNCIISAYGQAGDVEKM 415 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~a 415 (471)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.25 E-value=5.6 Score=35.24 Aligned_cols=130 Identities=14% Similarity=0.212 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCCH
Q 012111 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--AK----KFEEMESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNI 272 (471)
Q Consensus 201 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 272 (471)
++....+++.|.+.|+.-+..+|-+..-.... .. ....|..+|+.|.+.... .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556667777777777666555443322222 11 245677777777765433 2333444444433 23332
Q ss_pred ----HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 273 ----EKMEKWYNEFNLMGVKADI--QTLNILTKSYGRAGM--YDKMRSVMDFMQKRFFFPTVVTYNIV 332 (471)
Q Consensus 273 ----~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 332 (471)
+.++.+|+.+.+.|+..+. .....++.......+ ...+..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 3445555555555543322 222222222211111 22445555555555555554444433
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.10 E-value=0.38 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 432 ITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
.+|..+...|...|++++|.+.|++.++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566677778888888888888888888776
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.09 E-value=3.2 Score=31.93 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=34.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 337 GKAGHIEKMEEYFKKMKHRGMKPNSITY-CSLVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
...++++++..++..|.-. .|+..-. ..-...+...|++++|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467888888888877764 4432221 222334567788888888888887765
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.91 E-value=5.8 Score=34.42 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 146 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208 (471)
Q Consensus 146 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 208 (471)
.++..+...++..+++.+++.+-.++++......+..-|...|..+|+.....|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344455555555555555555555555554442233344455555555555555544444443
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=5 Score=33.73 Aligned_cols=206 Identities=11% Similarity=0.104 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300 (471)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 300 (471)
..|..-..+|....++++|...+.+..+-. ..+...|. -...++.|.-+.+++... ..-+..|+.-...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345555566666677777776666654321 22221111 122234455555554431 2223445566667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcC
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR---G--MKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~--~~p~~~~~~~li~~~~~~g 375 (471)
|..+|..+.|-..+++.-+. ...-++++|+++|++...- + ..--...+...-..+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777666666544331 2234455555555554321 0 0011223444555666777
Q ss_pred CHHHHHHHHHHHH----hCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCH
Q 012111 376 LIMKVDSILRQVE----NSDVILDT-PFFNCIISAYGQAGDVEKMGELFLTMKERHC---VPDNITFATMIQAYNALGMT 447 (471)
Q Consensus 376 ~~~~a~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~ 447 (471)
.+++|-..+.+-. +..-.++. ..|...|-.+....|+..|.+.++...+.+- .-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 7777665554322 11111222 3456666777888899999999988654321 23567788888877 67888
Q ss_pred HHHHHHH
Q 012111 448 EAAQNLE 454 (471)
Q Consensus 448 ~~A~~~~ 454 (471)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 8876554
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.89 E-value=0.29 Score=27.20 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888754
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=4.6 Score=32.67 Aligned_cols=94 Identities=16% Similarity=0.014 Sum_probs=58.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (471)
+...+...|++++|..-++........-+ ..+--.|.+.....|.+++|+.+++...+.+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 34556777888888877776654311111 11223455667777888888888876665432 233333445778888
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 012111 445 GMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 445 g~~~~A~~~~~~m~~~~~ 462 (471)
|+.++|+.-|++.+..++
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 888888888888877753
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.66 E-value=0.8 Score=32.31 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666666654
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.47 E-value=3.1 Score=33.63 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVE 388 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 388 (471)
.+..+...|++.|+.+.|.+.|.++......+. ...+-.+|......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666655533332 2234455555555566666555555443
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.27 E-value=0.15 Score=28.00 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=15.2
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHH
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQAS 134 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~ 134 (471)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 555666666666666666666654
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.23 E-value=5 Score=32.46 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD--IQTLNILTKSYGRAGMYDKMRSVMDFM 317 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (471)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555544332222 123344444555555555555544443
No 296
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.17 E-value=14 Score=36.94 Aligned_cols=355 Identities=11% Similarity=0.074 Sum_probs=146.9
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCCCCCCH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ-------PEQASLLFEVMLSDGLKPSV 149 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~ 149 (471)
....+...+-.|.+.|++++|+++....... +......+...+..|....+ -+....-|++........|+
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 4556778888888999999999988665544 35555677777887776532 23555566665554332233
Q ss_pred H---HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCC
Q 012111 150 D---VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-----------RFDLIEKILAEMSYLG 215 (471)
Q Consensus 150 ~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~g 215 (471)
. +|..+.. +...+- -. ..+..+..-|--+=-.+.+.. .++...+.+...-+..
T Consensus 188 yK~AvY~ilg~--cD~~~~--~~---------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~ 254 (613)
T PF04097_consen 188 YKRAVYKILGR--CDLSRR--HL---------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESH 254 (613)
T ss_dssp HHHHHHHHHHT----CCC---S----------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGG
T ss_pred HHHHHHHHHhc--CCcccc--ch---------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhh
Confidence 2 2332211 111000 00 011111111110000111111 1122222222333332
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 012111 216 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTL 294 (471)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 294 (471)
+.+ ..........+.-.|+++.|.+.+-.. + ....+.+.+...+.-|.-.+-.+... ..+.... -.+....+
T Consensus 255 F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~~-~--~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~ 327 (613)
T PF04097_consen 255 FNA-GSNPLLYFQVLLLTGQFEAAIEFLYRN-E--FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNF 327 (613)
T ss_dssp CTT-------HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------H
T ss_pred ccc-chhHHHHHHHHHHHhhHHHHHHHHHhh-c--cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCH
Confidence 333 111122344555678999998887762 1 13445555555444332222111111 2221111 01112456
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHH-----------HHHHH---HHHcC
Q 012111 295 NILTKSYGR---AGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-ETFGKAGHIEKME-----------EYFKK---MKHRG 356 (471)
Q Consensus 295 ~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-----------~~~~~---m~~~~ 356 (471)
..||..|.+ ..+..+|.+++-.+....-+.....+...+ ......++++.-+ .++++ +. +
T Consensus 328 arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~ 405 (613)
T PF04097_consen 328 ARLIGQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--K 405 (613)
T ss_dssp HHHHHHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--C
Confidence 777777775 356778888877666543221222222222 2223333322211 11111 11 1
Q ss_pred CC-CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCC-----------HHHHHHHHH
Q 012111 357 MK-PNSI---TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG-QAGD-----------VEKMGELFL 420 (471)
Q Consensus 357 ~~-p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-----------~~~a~~~~~ 420 (471)
.. ++.. .......-+...|+++.|..+|..+.+.+. -....|.++.-.. .... ...|..+.+
T Consensus 406 ~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~ 483 (613)
T PF04097_consen 406 FDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDK--VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILE 483 (613)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHH
Confidence 11 1222 223334446677888888888877654321 1223333333222 2222 344555555
Q ss_pred HHHhCC-----CCC-CHHHHHHHHH-----HHHhcCCHHHHHHHHHHH
Q 012111 421 TMKERH-----CVP-DNITFATMIQ-----AYNALGMTEAAQNLENKM 457 (471)
Q Consensus 421 ~~~~~~-----~~p-~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m 457 (471)
.....+ +.+ +..|+..|++ .+...|+++.|++.++++
T Consensus 484 ~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 484 RYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 444321 111 2455665553 346889999998877764
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.05 E-value=0.38 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 436 TMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.+..++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455666667777777777777766654
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=3 Score=36.32 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=63.8
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 291 (471)
Q Consensus 214 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (471)
.|.+....+...++..-....+++.++..+-++...... .++. +-...++ ++..-++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 344555555555665555566777777777666433210 1111 1111222 22334566777777777777888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888777776665543
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.76 E-value=1.4 Score=31.15 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012111 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193 (471)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (471)
-+..+-++.+......|++.+..+.+++|-+.+++..|+++|+.++..-+ .....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35667777777777788888888888888888888888888888776433 22225555543
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=5.7 Score=31.45 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccC-ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQA-RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD-VYTALV 156 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li 156 (471)
+.+...|+ +.+.+..++|+.-|..+.+.+ +.. .+-..........+.|+...|...|+++-.....|... -...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 33444443 345555666666666665543 111 11122233334455566666666666665543333222 111111
Q ss_pred --HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 157 --SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213 (471)
Q Consensus 157 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (471)
-.+...|.++......+.+.. .+.+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 123445556665555555543 23233333444455555566666666666665554
No 301
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.15 E-value=2.1 Score=35.21 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 012111 82 LEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAY 159 (471)
Q Consensus 82 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~ 159 (471)
...+..+.+.++..+|+...+.-.+.. |.+...-..++..|+-.|++++|..-++..-+.. ..+....|..+|++-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 345667778999999999988777765 6677788899999999999999998888776542 233456677777653
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.12 E-value=17 Score=35.85 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhccCccCChhHHHHHHHH---HhcCCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC
Q 012111 94 WQLALKIFGLLRQQQWYQARCQTFTKLMVM---LGKCKQPEQASLLFEVMLS-------DGLKPSVDVYTALVSAYGQSG 163 (471)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~ 163 (471)
...|.++++.+...+ ..........+.. +....+.+.|...|....+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 467888888888765 2222222222222 3355788899998888876 44 2334555666665532
Q ss_pred -----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cc
Q 012111 164 -----LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG----KA 233 (471)
Q Consensus 164 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~ 233 (471)
+.+.|+.+|.+.-. .| .|+...+...+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 55667777777665 23 3444443333222222 24566777777777777632 22222222222 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286 (471)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (471)
.+...|..++.+..+.+ .|...--...+..+.. ++++.+.-.+..+...|
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 45667777777766554 2222111222222333 55555555555554443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.94 E-value=0.69 Score=25.08 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=1.5 Score=38.15 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 212 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 212 (471)
.++++.++..=.. +|+-||..+++.+|+.+.+.+++..|.++...|.
T Consensus 116 pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3344444444443 4555555555555555555555555555444443
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.81 E-value=13 Score=34.03 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012111 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA---DIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (471)
...+|..+...+.+.|.++.|...+..+...+... .......-++..-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777777777777777776533111 333444445566666777777777766665
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.72 E-value=8.5 Score=31.81 Aligned_cols=180 Identities=12% Similarity=-0.003 Sum_probs=95.8
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 170 (471)
.|-+..|.--|.+..... |.-+.+||.+...+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++..|.+
T Consensus 78 lGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 344555555555555543 44567889998899999999999999999988744333333333333 334688888888
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 012111 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL-AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (471)
-+...-....-.|-...|.-+. -..-++.+|..-+ ++.... +..-|...|-.|.- |+..+ ..+++++...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHhh
Confidence 7776665332233333333222 2334566665443 333322 44444433332221 22211 2233333221
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 250 GGCHPD-------IFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 250 ~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
. ..+ ..||--+..-+...|+.++|..+|+-.+.
T Consensus 226 a--~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 A--TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 111 23455566666666666666666665543
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.66 E-value=7.3 Score=30.95 Aligned_cols=130 Identities=9% Similarity=0.086 Sum_probs=62.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Q 012111 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG--LIMKVDSILRQVENSD 391 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~ 391 (471)
+..+.+.++.|+...|..++..+.+.|++... ..+...++-+|.......+-.+.... -.+-|.+++.++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~-- 90 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT-- 90 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--
Confidence 34444556666666667777777766665443 33344444555444443332222111 12223333333321
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
.+..+++.+...|++-+|+++.+..... +......++.+..+.++...-..+++-...
T Consensus 91 ------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 ------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345566667777777777776654221 111123345555555554444444443333
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=14 Score=35.67 Aligned_cols=46 Identities=20% Similarity=-0.091 Sum_probs=22.1
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012111 125 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 176 (471)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 176 (471)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34455555544443322 33445555555555555555555554443
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=3.7 Score=39.21 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 259 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338 (471)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (471)
-+.++..+.+.|-.++|+++-. .|+. - .....+.|+++.|.++..+.. +..-|..|..+..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~-------D~d~-r----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELST-------DPDQ-R----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCC-------Chhh-h----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 3445555666666666654321 1111 1 122345577777766654332 45567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 418 (471)
.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 7777777777765543 445555566666666555555555554432 3334455666777777776
Q ss_pred HHHH
Q 012111 419 FLTM 422 (471)
Q Consensus 419 ~~~~ 422 (471)
+..-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 6543
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.14 E-value=5 Score=28.19 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012111 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193 (471)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (471)
+.-++.+-++.+......|++.+..+.+++|-+.+++..|+++|+.++..- ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 455677778888888888888888888888888888888888888877422 224445555543
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.10 E-value=3 Score=34.34 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV--ILDTPFFNCIISA 405 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 405 (471)
|.+..++.+.+.+.+.+++...++-++.+ +-|..+-..+++.++-.|++++|..-++...+..+ .+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34566778889999999999999888763 34667778899999999999999988877765433 2344566666654
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH-HHHH-hc-CCHHHHHHHHHHHHHhhhcCC
Q 012111 406 YGQAGDVEKMGELFLTMKERHCVP-DNITFATMI-QAYN-AL-GMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~-~~~~-~~-g~~~~A~~~~~~m~~~~~~~~ 465 (471)
-.-. .++|.--..-|+.- ....|...+ .+.. +. |.-+.+..+-+...+..|.+.
T Consensus 82 ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 EAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 3211 11222111112221 234454433 3332 23 344445566666666666543
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.83 E-value=0.97 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.+..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666777777777766655
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.53 E-value=1.3 Score=25.28 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012111 432 ITFATMIQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
.+++.|...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555556666666666666666665544
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.53 E-value=13 Score=32.24 Aligned_cols=40 Identities=15% Similarity=-0.026 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 131 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI 172 (471)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 172 (471)
.+|.++|.-+.++.- ...+-..++..+....+..+|...+
T Consensus 150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHH
Confidence 467777777766521 2233344555565555555554443
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.91 E-value=12 Score=31.11 Aligned_cols=202 Identities=14% Similarity=0.048 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 012111 186 YTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 264 (471)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (471)
..+......+...+.+..+...+...... ........+......+...+++..+.+.+....... ..+.........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHHH
Confidence 44444445555555555555555554431 113334444455555555555666666666554432 111111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 265 -AYGNSGNIEKMEKWYNEFNLMGV--KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341 (471)
Q Consensus 265 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 341 (471)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 55666666666666666643111 012233333333455666777777777666654222134556666666777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 342 IEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
++.+...+...... .|+ ...+..+...+...+..+.+...+.......
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777664 232 3344444444446666777777777776653
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.61 E-value=9.6 Score=29.42 Aligned_cols=59 Identities=19% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 012111 83 EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143 (471)
Q Consensus 83 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 143 (471)
+++......++.+++..+++-+.--.+-.+...++ -...+...|++++|.++|+++.+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhcc
Confidence 33444445566666666666665432111222222 223345566666666666666654
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.50 E-value=15 Score=31.67 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=60.0
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHHhhhhhh------ccCCCc-----hHHHHHHHHHHHhhcHHHHHHHHHHhhhc-c
Q 012111 41 LGIQKEAEKDLSKILRTEFAIKNIEKKVSSKK------YKNLWP-----KPVLEALDEAIKQKKWQLALKIFGLLRQQ-Q 108 (471)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~ 108 (471)
....-.+.+.|.-..++..+++..+.-++.-. ....+. ..-+--|+++...++|.+++...-+--+. .
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 34444555555555566666655554443210 000000 11123366666677776665533222221 1
Q ss_pred CccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 012111 109 WYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ-----SGLLDEAFSTI 172 (471)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~ 172 (471)
.+|| .....-|-.|.+.+.+..+.++-..-....-..+...|..++..|.. .|.+++|.++.
T Consensus 115 klPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 115 KLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1222 33444445566666666666655554443222233335554444433 46666666555
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.50 E-value=1.9 Score=37.98 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
..-|.+.|.+++|+++|...... .| |++++..-..+|.+...+..|+.-.......+-. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 45678889999999999877764 45 7888888888888888888888777766654311 12223333333333455
Q ss_pred HHHHHHHHHHHHhCCCCCCHH
Q 012111 412 VEKMGELFLTMKERHCVPDNI 432 (471)
Q Consensus 412 ~~~a~~~~~~~~~~~~~p~~~ 432 (471)
..+|.+-++...+ +.|+..
T Consensus 181 ~~EAKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHh--hCcccH
Confidence 5555555555554 456643
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.37 E-value=1.4 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 397 PFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887764
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.91 E-value=14 Score=30.35 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=61.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHhcC
Q 012111 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS--DCKPDVYTYSILIKSCTKFH 199 (471)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 199 (471)
-.+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+.. +-.+|+..+.+|...+.+.+
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 33455555 668888888887776656666666666665 678899999888876642 23678999999999999999
Q ss_pred CHHHHH
Q 012111 200 RFDLIE 205 (471)
Q Consensus 200 ~~~~a~ 205 (471)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 998874
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.60 E-value=12 Score=30.58 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=69.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHRGMKPN-----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
.-+...|++++|..-|...+.. +++. ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3467889999999999998876 2332 234555556788889999999988888887755 33344444567888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH
Q 012111 409 AGDVEKMGELFLTMKERHCVPDNI 432 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~~~p~~~ 432 (471)
...+++|++=|+.+.+. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 88999999999999884 45544
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.53 E-value=12 Score=30.57 Aligned_cols=74 Identities=18% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---HCVPDNITFATMIQAYNALGMTEAAQ 451 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 451 (471)
-+.|.+.|-.+...+..-++.....|...|. ..|.++++.++.+..+. +-.+|+..+..|...+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566777766766655546666666665555 57788888888877653 33678888889999999999888874
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.37 E-value=18 Score=31.06 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC-
Q 012111 215 GIECSAVTYNTIIDGY-GKAKKFEEMESSFSAMVESGGCHPD--IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GV- 287 (471)
Q Consensus 215 g~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 287 (471)
+-.||+..-|..-.+- .+..+.++|+.-|+++.+..|-+-+ -.....++....+.+++++....|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3355554433322211 2345788888888888776533222 234455677788888888888888877431 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----
Q 012111 288 -KADIQTLNILTKSYGRAGMYDKMRSVMDFMQK----R-FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM---- 357 (471)
Q Consensus 288 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---- 357 (471)
..+..+.|.++.......+.+-....++.-.+ . +-..-..|-.-|...|...|.+.+..++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23344556666665555555555444443221 1 0000111223444555555666666666666554310
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 358 KPN-------SITYCSLVSAYSKAGLIMKVDSILRQVE 388 (471)
Q Consensus 358 ~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 388 (471)
.-| ...|..=|+.|..+.+-.....++++..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 111 1234555555555555555555555543
No 324
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.12 E-value=6.1 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
..+-+..+...++.|++.+...-+++|.+.+|+..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344445555566666666666666666666666666666666543
No 325
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.78 E-value=21 Score=31.20 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-FH-RFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMES 241 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (471)
+.+|+.+|+.......+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 344555554322111233445555555555443 11 12222233333322 1234555555566666666666666666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 242 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 280 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 280 (471)
+++......+...|...|..+|......|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 665554442334455556666666666666554444443
No 326
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.75 E-value=66 Score=36.99 Aligned_cols=360 Identities=11% Similarity=0.045 Sum_probs=180.8
Q ss_pred HHhhcHHHHHHHHHHhhhccC-ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
.+.+.+.+|+-.++.-..... ..-....|..+...|+..++++...-+...-.. +...+. -|-.....|+++.
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGNWAD 1467 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhccHHH
Confidence 467888999999988421110 012233455555589999999988877764221 222333 3444567899999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN-TIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
|...|+.+.+.. ++....++-++......|.+..+.-..+-....- .+....++ .-+.+-.+.++++.......
T Consensus 1468 a~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 999999998732 3346677877777777777777776655554332 22233333 23444467777777666554
Q ss_pred HHcCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 012111 247 VESGGCHPDIFTLNSM--ISAYGNSG--NIEKMEKWYNEFNLM--------GVKA-DIQTLNILTKSYGRAGMYDKMRSV 313 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~--------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 313 (471)
.. +..+|... .....+.. |.-.-.+..+.+.+. +..- -...|..+++...-..--.....+
T Consensus 1543 -~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1543 -DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred -cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11222222 22222222 111111222222211 1110 113344444433222111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK-MKHRGMKP-----NSITYCSLVSAYSKAGLIMKVDSILRQV 387 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 387 (471)
...=......-+..-|..-+..-....+..+-+--+++ +......| -..+|-...+...+.|.++.|...+-..
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 10000000000111122222111111111111111111 11111121 2456777888888899999998877666
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHH---------HHHhcCC--HH
Q 012111 388 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD--------NITFATMIQ---------AYNALGM--TE 448 (471)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~---------~~~~~g~--~~ 448 (471)
.+.+ -...+-.....+...|+...|+.++++-.+.. .|+ +..-+.++. -....|+ .+
T Consensus 1697 ~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~-~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1697 KESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN-FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred hhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh-cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence 6655 23445566677888899999999998887542 222 222222221 1223344 33
Q ss_pred HHHHHHHHHHHhhhcCCCCcc
Q 012111 449 AAQNLENKMIAMKENSGKKLI 469 (471)
Q Consensus 449 ~A~~~~~~m~~~~~~~~~~~~ 469 (471)
...+.++++.+..+..+++.+
T Consensus 1773 ~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred HHHHHHHHHHHHcccccCcee
Confidence 447888888888876666554
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.74 E-value=0.15 Score=39.66 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 410 (471)
.++..+.+.+.++....+++.+...+..-+....+.++..|++.+..+...++++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 35666666777777777888777665555677778888888888777777777662211 22245667777777
Q ss_pred CHHHHHHHHHHHH
Q 012111 411 DVEKMGELFLTMK 423 (471)
Q Consensus 411 ~~~~a~~~~~~~~ 423 (471)
.+++|.-++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7877777777654
No 328
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.52 E-value=29 Score=32.75 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=72.4
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHH
Q 012111 358 KPNSITY-CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ--AGDVEKMGELFLTMKER-HCVPDNIT 433 (471)
Q Consensus 358 ~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~p~~~~ 433 (471)
.|+..++ +.++..+.+.|-..+|..++..+... ++|+...|..+|..-.. .-+...+..+|+.|... | -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4454444 45777788889999999999998887 45588888888764321 22378888999988754 5 68888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 434 FATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
|--.+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88777766789999888776666554
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.46 E-value=5.7 Score=35.17 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=66.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 299 KSYGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
+-|.+.|.+++|++.|...... .| +++++..-..+|.+..++..|..--...+..+ ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 5799999999999999877765 34 78888888899999999988877666665542 22234455555555566777
Q ss_pred HHHHHHHHHHHhCCCC
Q 012111 378 MKVDSILRQVENSDVI 393 (471)
Q Consensus 378 ~~a~~~~~~~~~~~~~ 393 (471)
.+|.+-++...+..+.
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 7777777777765443
No 330
>PRK09687 putative lyase; Provisional
Probab=84.63 E-value=28 Score=30.73 Aligned_cols=234 Identities=12% Similarity=0.025 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCCCCHHH
Q 012111 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF----EEMESSFSAMVESGGCHPDIFT 258 (471)
Q Consensus 183 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 258 (471)
+|.......+.++...|. +.+...+..+... +|...-...+.++...|+. .++...+..+... .++...
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHH
Confidence 344444444444444443 2222223333322 2444444445555555542 3445555444222 334444
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 259 LNSMISAYGNSGNI-----EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333 (471)
Q Consensus 259 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 333 (471)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 44444444433211 122222222221 23445555556666666653 344444444432 3444444444
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012111 334 ETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412 (471)
Q Consensus 334 ~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 412 (471)
.++.+.+ +...+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555442 23345555555553 34666666677777777764 3444443333332 1 233566667777774
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 413 EKMGELFLTMKERHCVPDNITFATMIQAYN 442 (471)
Q Consensus 413 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (471)
+|...+..+.+. .||..+-...+.+|.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 577777766653 356666555555543
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.56 E-value=51 Score=33.71 Aligned_cols=270 Identities=13% Similarity=0.041 Sum_probs=129.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcc--------------CccCCh-----hHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 012111 82 LEALDEAIKQKKWQLALKIFGLLRQQQ--------------WYQARC-----QTFTKLMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 82 ~~~l~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
.++++.+++.|+++.|..+++....+- .+|++. ...-.-+-......++++|..++.++..
T Consensus 364 ~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~ 443 (894)
T COG2909 364 SEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEH 443 (894)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 355666667777777777766652110 011111 0111111223456778888888777665
Q ss_pred CCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 143 DGLKPSV-------DVYTALVS-AYGQSGLLDEAFSTINDMKSV---SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 211 (471)
Q Consensus 143 ~~~~~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 211 (471)
.-..|+. ..++.+-. .....|+++.|.++-+..... ....+....+..+..+..-.|++++|..+..+.
T Consensus 444 ~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 444 FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 4222221 12333322 233467778887777666542 112334555666667777778888888877666
Q ss_pred HHCCCCCCHHHHHH---H--HHHHHccCC--HHHHHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHhc-CCHHHHHHH
Q 012111 212 SYLGIECSAVTYNT---I--IDGYGKAKK--FEEMESSFSAMVESGGCH-----PDIFTLNSMISAYGNS-GNIEKMEKW 278 (471)
Q Consensus 212 ~~~g~~~~~~~~~~---l--~~~~~~~~~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~-~~~~~a~~~ 278 (471)
.+..-.-+...+.. + ...+...|+ +.+.+..|.......... +-..++..++.++.+. +...++..-
T Consensus 524 ~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~ 603 (894)
T COG2909 524 EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLG 603 (894)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhc
Confidence 54422223332222 2 233455663 333333444433221111 1123344444444441 111222222
Q ss_pred HHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 012111 279 YNEFNLMGVKADIQTL--NILTKSYGRAGMYDKMRSVMDFMQKRFFFP----TVVTYNIVIET--FGKAGHIEKMEEYFK 350 (471)
Q Consensus 279 ~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~ 350 (471)
++.-......+-...+ ..|+......|+.++|...++++......+ +..+....+.. ....|+.+.+.....
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 2222221112222222 366777788888888888887776543322 22222222222 334677776666555
Q ss_pred H
Q 012111 351 K 351 (471)
Q Consensus 351 ~ 351 (471)
+
T Consensus 684 ~ 684 (894)
T COG2909 684 K 684 (894)
T ss_pred h
Confidence 4
No 332
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.55 E-value=51 Score=33.70 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=61.3
Q ss_pred HhcCCHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHhCCCCCC
Q 012111 372 SKAGLIMKVDSILRQVENS------DVILDTPFFNCIISAYG---------------QAGDVEKMGELFLTMKERHCVPD 430 (471)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~---------------~~g~~~~a~~~~~~~~~~~~~p~ 430 (471)
...|.+.+|.+.|+.++-. +-.-+..-...++..+. ..+..+.+.++-..+....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 3568999999998886532 11112333334444331 12445556555555556667775
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 431 NI--TFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 431 ~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
.. +..+.+..+.+.+++..|..+..++++..|.++
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 44 455677889999999999999999999988765
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.26 E-value=1.6 Score=25.63 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 012111 437 MIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
|.++|...|+.+.|++++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3345555555555555555555
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.91 E-value=22 Score=29.10 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=42.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+.+.|++++|..-|....+.-.... ...|..-..++.+.+.++.|+.--.+.+..+ +-....+..-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 3444555555554444444311111 1223333444555556666555555555432 1122223333445556666
Q ss_pred HHHHHHHHHHHHhCCC
Q 012111 377 IMKVDSILRQVENSDV 392 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~ 392 (471)
++.|+.-|+.+.+..+
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6666666666665543
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.75 E-value=1.9 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 434 FATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
|..+...+...|+++.|...++..++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3444455555555555555555555443
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.65 E-value=2.2 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666667777777777776653
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.60 E-value=14 Score=29.57 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhccCccCChhHHHHHHHHHhcC
Q 012111 94 WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKC 127 (471)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (471)
+++|+.-|+.+...+ |....++..+..+|...
T Consensus 51 iedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 51 IEDAISKFEEALKIN--PNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHH
Confidence 344444445555432 22335555555555433
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.55 E-value=17 Score=29.16 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 414 KMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 414 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
+|.+.|++..+ ..|+..+|+.-+...
T Consensus 98 kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 98 KATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 33344444433 245555555544443
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.55 E-value=4.1 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=15.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 437 (471)
.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 3345555555555555555555 34555444333
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.00 E-value=2.1 Score=21.60 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 012111 437 MIQAYNALGMTEAAQNLE 454 (471)
Q Consensus 437 l~~~~~~~g~~~~A~~~~ 454 (471)
+..++...|+.++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344455555555555444
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.82 E-value=60 Score=33.23 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=120.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHH-HHHHccCCHHHHHHHHHHHHHcC---CCCCCHHHHHHHHH
Q 012111 196 TKFHRFDLIEKILAEMSYLGIECSAV-------TYNTII-DGYGKAKKFEEMESSFSAMVESG---GCHPDIFTLNSMIS 264 (471)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 264 (471)
....++.+|..++.++...-..|+.. .++.+- ......|++++|.++.+.....- -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988876542222211 223222 22345688999999888776542 12345566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCCHH--HHHHHHHHHHhCC----C--CCCHHHHHH
Q 012111 265 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT-----KSYGRAGMYD--KMRSVMDFMQKRF----F--FPTVVTYNI 331 (471)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~--~a~~~~~~~~~~~----~--~~~~~~~~~ 331 (471)
+..-.|++++|..+..+..+..-..++..+..+. ..+...|+.. +.+..|....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776543333444333222 2345566332 2333333332211 0 011233444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----cCHHHHHHHHH
Q 012111 332 VIETFGKA-GHIEKMEEYFKKMKHRGMKPNSI--TYCSLVSAYSKAGLIMKVDSILRQVENSDVI----LDTPFFNCIIS 404 (471)
Q Consensus 332 li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 404 (471)
+..++.+. +...++..-+.--......|-.. .+..|+......|+.++|...++++...... ++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444442 12222222222222222222222 2236778888899999999988887753322 22222222222
Q ss_pred --HHHhcCCHHHHHHHHHH
Q 012111 405 --AYGQAGDVEKMGELFLT 421 (471)
Q Consensus 405 --~~~~~g~~~~a~~~~~~ 421 (471)
.....|+...+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23456888777776655
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.27 E-value=4.7 Score=21.60 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888887765
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.01 E-value=52 Score=31.92 Aligned_cols=356 Identities=10% Similarity=0.068 Sum_probs=206.5
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHh-cCCCHHHHHHHHHHHHhC-CCC-CCHHHH
Q 012111 76 LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG-KCKQPEQASLLFEVMLSD-GLK-PSVDVY 152 (471)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~-~~~-~~~~~~ 152 (471)
....-+..-...-.+.|..+.+.++|++..+. ++-+...|...+..+. ..|+.+.....|+..... |.. .+...|
T Consensus 77 l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 77 LCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 33444445555556889999999999999875 5778888877766554 458888888999988765 321 256678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---h------cCCHHHHHHHHHHHHH----------
Q 012111 153 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT---K------FHRFDLIEKILAEMSY---------- 213 (471)
Q Consensus 153 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~------~~~~~~a~~~~~~~~~---------- 213 (471)
...|.--...+++.....+|+++.+. |. .-|+.....|. + ....+.+.++-.....
T Consensus 155 dkyie~en~qks~k~v~~iyeRilei----P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~ 229 (577)
T KOG1258|consen 155 DKYIEFENGQKSWKRVANIYERILEI----PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEP 229 (577)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhh----hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccCh
Confidence 88888888888999999999999872 22 12222222221 1 1233333333322221
Q ss_pred ----------CCCCCCHH--HHHHHHH-------HHHccCCHHHHHHHHHHHHHcC--CC----CCCHHHHHHHHHHHHh
Q 012111 214 ----------LGIECSAV--TYNTIID-------GYGKAKKFEEMESSFSAMVESG--GC----HPDIFTLNSMISAYGN 268 (471)
Q Consensus 214 ----------~g~~~~~~--~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~ 268 (471)
.+-+.+.. ..+.+-. ++-......+..-.|+.-.+.. .+ .++..+|..-+..-..
T Consensus 230 ~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~ 309 (577)
T KOG1258|consen 230 LEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEIT 309 (577)
T ss_pred hHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhh
Confidence 11011110 0111111 1111112222222222222211 11 2345678888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 012111 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEE 347 (471)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~ 347 (471)
.|+.+.+.-+|+...-.- ..=...|-..+.-....|+.+-|..++....+-..+-.+. ...+-.. .-..|++..|..
T Consensus 310 ~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEARFEESNGNFDDAKV 387 (577)
T ss_pred cccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHH
Confidence 999999999988875321 1222333334444445588888888877665543332222 2222222 334689999999
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCcCHHHHHHHHH-----HHHhcCCHHHHHHH
Q 012111 348 YFKKMKHRGMKPNSI-TYCSLVSAYSKAGLIMKVD---SILRQVENSDVILDTPFFNCIIS-----AYGQAGDVEKMGEL 418 (471)
Q Consensus 348 ~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~ 418 (471)
+++.+.+.- |+.. .-..-+....+.|+.+.+. .++........ +......+.- .+.-.++.+.|..+
T Consensus 388 ~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 388 ILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999998873 5432 3334455566778888877 33333332211 2222222222 23346889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 419 FLTMKERHCVPDNITFATMIQAYNALG 445 (471)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 445 (471)
+.++.+. ++++...|..+++.+...+
T Consensus 464 l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 464 LLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 9999986 6778888888888776665
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.93 E-value=46 Score=31.31 Aligned_cols=131 Identities=14% Similarity=0.033 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
++....+......|+...|-+-+..+.++. +-++.............|+++.+.+.+...... +.....+...+++.
T Consensus 290 ~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~ 366 (831)
T PRK15180 290 REITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRS 366 (831)
T ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHh
Confidence 445555666667777776655444443332 223333333344456677888877777655432 22345566777777
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 214 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 214 (471)
....|+++.|..+-+.|.. ..+ .+...........-..|-++++.-.++++...
T Consensus 367 ~~~l~r~~~a~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 367 LHGLARWREALSTAEMMLS-NEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhchhhHHHHHHHHHHHhc-ccc-CChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7778888888887777765 222 23333333333333455667777777666544
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.51 E-value=4 Score=23.92 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 012111 402 IISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 346
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.49 E-value=0.48 Score=36.80 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=81.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. . +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c----cccCHHHHHHHHHhcch
Confidence 5677777888999999999999877666788999999999999888888888771 1 11333556677777777
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 446 (471)
++++.-++.++....-. +..+...++++.|.+++. + .++...|..++..|...++
T Consensus 86 ~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~---~---~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAK---K---VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGG---G---CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHH---h---cCcHHHHHHHHHHHHhcCc
Confidence 77766666553322111 111223344444442221 1 2467888888888776654
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.32 E-value=62 Score=32.42 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 012111 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 198 (471)
Q Consensus 155 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 198 (471)
+|-.|.+.|++++|.++...... ........+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 44556788888888888865554 2344445566667766654
No 348
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.07 E-value=1.1e+02 Score=35.28 Aligned_cols=319 Identities=12% Similarity=0.066 Sum_probs=163.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 012111 119 KLMVMLGKCKQPEQASLLFEVMLSDGL--KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196 (471)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (471)
.+..+-.+++.+..|...++.-..... ......|-.+...|+..+++|....+...... .|+ .+. -|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s--l~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS--LYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc--HHH-HHHHHH
Confidence 445566678888888888888421111 11223344455588888888887777664222 222 222 333456
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 012111 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM-ISAYGNSGNIEKM 275 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a 275 (471)
..|++..|...|+.+.+.+ ++...+++.++......|.++.+.-..+-.... ..+....++.+ +.+--+.+++|..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 6789999999999998775 444777888887777788888877765555433 13333333333 3444567777766
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHH--HHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCH
Q 012111 276 EKWYNEFNLMGVKADIQTLNI--LTKSYGRAGMYD--KMRSVMDFMQKRFFFP---------TVVTYNIVIETFGKAGHI 342 (471)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~--~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 342 (471)
..... .. +..+|.. +.....+...-| .-.+..+.+++.-+.| =...|..++....-..
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-- 1608 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-- 1608 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH--
Confidence 66554 11 1111111 222222222211 1112233222221110 0123333333222111
Q ss_pred HHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCc-----CHHHHHHHHHHHHhcC
Q 012111 343 EKMEEYFKKMKHRGMKPNSI------TYCSLVSAYSKAGLIMKVDSILRQ-VENSDVIL-----DTPFFNCIISAYGQAG 410 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~-----~~~~~~~l~~~~~~~g 410 (471)
-....+... +..++.. -|..-+..-....+..+-.--+++ +......| -..+|-...+....+|
T Consensus 1609 --l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1609 --LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred --HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 111111111 1222211 111111111111111111111111 11111111 2457888888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 411 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 411 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.++.|...+-...+.+ . +..+--..+-++..|+...|..++++.++..-.
T Consensus 1685 ~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9999998887777654 2 334444567789999999999999999865543
No 349
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.57 E-value=24 Score=27.24 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012111 186 YTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 186 ~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 232 (471)
..|..++.+..+... ---+..+|..|.+.+.+.+..-|..++.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555544433 23344455555554455555555555555443
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.39 E-value=11 Score=30.91 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 428 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 428 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
.|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666666666666666666666666666665555
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.13 E-value=39 Score=29.35 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=55.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 012111 263 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK---- 338 (471)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 338 (471)
|++++..|++.+++.+.-+.-+..-+.........|-.|.+.+++..+.++-......--.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777777888777766555433222334445556666777888888777777766654333344457777666654
Q ss_pred -cCCHHHHHHHH
Q 012111 339 -AGHIEKMEEYF 349 (471)
Q Consensus 339 -~g~~~~a~~~~ 349 (471)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57888887766
No 352
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.92 E-value=15 Score=27.35 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 012111 132 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192 (471)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 192 (471)
+..+.++.+....+.|++.+....++++-+.+++..|+++|+.++.. +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 55666777777778888888888888888888888888888888753 333333444443
No 353
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.62 E-value=68 Score=31.82 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLR 105 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~ 105 (471)
..+...+..++-+|.+++|.+++....
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 566678888889999999999885443
No 354
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.47 E-value=17 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhh
Q 012111 441 YNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~~ 461 (471)
....|++++|...+++.++.-
T Consensus 51 ~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 334455555555554444443
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=42 Score=29.24 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 436 TMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
.++..+.+.|.+.+|..+.+....
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 355667777888877766655543
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.33 E-value=17 Score=24.57 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 408 QAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
...+.+.|+..|....+.-..|. -.++..++.+|...|++++++++.-.=
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888877776532222 235566777888888887776655433
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.18 E-value=41 Score=28.99 Aligned_cols=264 Identities=13% Similarity=0.143 Sum_probs=144.5
Q ss_pred HhhcHHHHHHHHHHhhhccCcc--CChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQ--ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD---GL--KPSVDVYTALVSAYGQS 162 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~ 162 (471)
+...+++|+.-|+.+.+..|-+ -...+...++....+.+++++....+.+|... .+ .-+..+.|.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4567888999998887654222 23456778888899999999998888877532 11 12455677777766666
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CC-------CHHHHHHHH
Q 012111 163 GLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYLGI----EC-------SAVTYNTII 227 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~-------~~~~~~~l~ 227 (471)
.+.+...++|+.-.....-..+. .|-.-|...|...+.+....+++.++...-. .. -...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 66555554444322100001111 1223456667777788888888887764311 11 134667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHhcCCHHHHHH-HHHHHH---hCCCCCCHHH---HHH
Q 012111 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI----SAYGNSGNIEKMEK-WYNEFN---LMGVKADIQT---LNI 296 (471)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~-~~~~~~---~~~~~~~~~~---~~~ 296 (471)
..|....+-.+...+|++........|.......+- ....+.|.+++|.. +|+.+. +.| .|-..+ |..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 888888888888888887765443445543333322 22345677777654 333332 234 232222 344
Q ss_pred HHHHHHHcCC--HH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 012111 297 LTKSYGRAGM--YD--KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 363 (471)
Q Consensus 297 ll~~~~~~~~--~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 363 (471)
|.+.+.+.|- ++ +| ..-.-.|.....+.++.+|.. +++.+-.+++..-.. .+..|+..
T Consensus 278 LANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~IM~DpFI 339 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-NIMDDPFI 339 (440)
T ss_pred HHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-cccccHHH
Confidence 4444444431 11 11 011123445567777877754 445554444443322 24445443
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.78 E-value=50 Score=29.83 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=11.7
Q ss_pred HhcCCHHHHHHHHHHHHHhhh
Q 012111 442 NALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~ 462 (471)
..+|-.+.|..+++-+++.+.
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHCCchHHHHHHHHHHHHHHc
Confidence 445555555555555555554
No 359
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.37 E-value=56 Score=29.57 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHH
Q 012111 94 WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ---SGLLDEAFS 170 (471)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~ 170 (471)
.+.-+.+++.+.+.+ +.+......++..+.+..+.+...+.++.+...... +...|...+..... .-.++....
T Consensus 47 ~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 456677888888775 677778888888888888888888999998887433 67777777765543 224555555
Q ss_pred HHHHhh
Q 012111 171 TINDMK 176 (471)
Q Consensus 171 ~~~~~~ 176 (471)
+|.+..
T Consensus 124 ~y~~~l 129 (321)
T PF08424_consen 124 VYEKCL 129 (321)
T ss_pred HHHHHH
Confidence 555443
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.18 E-value=60 Score=29.89 Aligned_cols=56 Identities=9% Similarity=-0.025 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 012111 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG-QAGDVEKMGELFLTMK 423 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 423 (471)
|..+.+.|-+..|.++.+-+...++.-|+.....+|..|+ ++++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4445566666666666666666555545555555555443 4555555555555543
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.73 E-value=31 Score=26.26 Aligned_cols=67 Identities=9% Similarity=-0.041 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 358 KPNSITYCSLVSAYSKAG---LIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.++..+--.+..++.+.. ++.+.+.+++.+.+ ..+.-......-|.-++.+.++++.+.++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444444444443 33344555555553 22222222333344455555666666666555554
No 362
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.61 E-value=43 Score=27.91 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD-IFTLNSMISAYGNSGNIEKMEKWYNEFNLM 285 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (471)
+.+||.+.-.+...|+++.|.+.|+...+.+ |. ..+...-.-++.-.|++.-|.+-+-+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 5667777777778888888888888876643 22 111111122234467777777666655443
No 363
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=74.92 E-value=59 Score=28.66 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHH
Q 012111 398 FFNCIISAYGQAGDVEK 414 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~ 414 (471)
.|..|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45556666666665543
No 364
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.46 E-value=9.7 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 434 FATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
.-.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555666666555555543
No 365
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.03 E-value=16 Score=21.85 Aligned_cols=33 Identities=6% Similarity=0.115 Sum_probs=20.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 439 (471)
.+.|-.+++..++++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666666666655543
No 366
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=55 Score=27.79 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=60.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHH
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVT-YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT-YCSLVSAYSKAGLIM 378 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~ 378 (471)
|.....++.|..-+.+... +.|+..+ |+.-+.++.+..+++.+..--.+.++ +.||..- ...+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4445566666665544444 3455533 44455566666666666555444444 3555432 333445555666677
Q ss_pred HHHHHHHHHH----hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 379 KVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 379 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
.|+..+++.. ...+.+-..+...|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777766653 3334444445555544433333334444444433
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.43 E-value=1.1e+02 Score=30.97 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=16.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 012111 438 IQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
+..+...|+...|...+..+...
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 34567788888888888777654
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.16 E-value=1.1e+02 Score=30.92 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 352 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (471)
...-+......++++.+...+..|....- -...-.--+..++...|+.++|..+|+.+
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444456666666666555533211 12222333445545566666666666654
No 369
>PRK09687 putative lyase; Provisional
Probab=72.57 E-value=68 Score=28.31 Aligned_cols=186 Identities=11% Similarity=0.025 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCC
Q 012111 148 SVDVYTALVSAYGQSGLL----DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-----DLIEKILAEMSYLGIEC 218 (471)
Q Consensus 148 ~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~ 218 (471)
+...-...+.++...|+. +++...+..+... .++...-...+.++...+.. ..+...+..... .+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 444445555555555542 3455555554221 34444444444444443211 122222222222 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNIL 297 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (471)
+..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 44444555555555554 2344444444332 22233333333333332 12234444444332 3344445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 354 (471)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (471)
+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+..+.+
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 5555555553 2333333223221 1 122344555555553 45555555544
No 370
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=72.49 E-value=78 Score=33.56 Aligned_cols=135 Identities=12% Similarity=0.196 Sum_probs=70.5
Q ss_pred CCch-HHHHHHHHHHHhhcHHHHHHHHHHhhhccC--ccCChhHHHHHHHHHhc-CCCHHHHHHHHHHHHhCCCCCCHHH
Q 012111 76 LWPK-PVLEALDEAIKQKKWQLALKIFGLLRQQQW--YQARCQTFTKLMVMLGK-CKQPEQASLLFEVMLSDGLKPSVDV 151 (471)
Q Consensus 76 ~~~~-~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~ 151 (471)
..|+ .++..++.+...++|.+|+.+-+.-+=.-. +..+...|-.-+..+.+ .++.+-.-.++..+.+.++ +...
T Consensus 691 I~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tm 768 (928)
T PF04762_consen 691 IYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTM 768 (928)
T ss_pred hccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccc
Confidence 3444 455788888999999999887765432110 12344444444444443 3555544444444443322 1222
Q ss_pred HHHHH------------HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 012111 152 YTALV------------SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH--RFDLIEKILAEMSYL 214 (471)
Q Consensus 152 ~~~li------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~ 214 (471)
|.... ......+++...-+.+.+.... ..-...-+..++.+|++.+ +++.|++++.++.+.
T Consensus 769 Y~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 769 YKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 22222 1111223344444444333320 1223334566777888877 788888888888765
No 371
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.94 E-value=37 Score=27.42 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 342 IEKMEEYFKKMKHRGMKPN--SITY-----CSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~--~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
.+.|+.+|+.+.+.--.|. .... ...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5566666666655422221 1111 1122345555555555555555554
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.55 E-value=55 Score=26.80 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHH-
Q 012111 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA--LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL- 191 (471)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 191 (471)
..|..++.... .+.. +.....+.+...+..-.-.++.. +...+...|++++|...++.... .+....+..+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHH
Confidence 34444444433 2222 44455555554321111112222 23456677888888887777664 2233333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 012111 192 ----IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 250 (471)
Q Consensus 192 ----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (471)
.+.....|.++.|+.+++.....+. .......-.+.+...|+-++|..-|.+..+..
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3345566777777777776654432 12223334456677777777777777776653
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.67 E-value=9.7 Score=36.47 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=64.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 452 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 452 (471)
..|+...|...+.......+.-.-.....|...+.+.|....|-.++....... ...+-++..+.+++.-..+.+.|.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 457788888887776644333233345556667777777778888887766543 4456677778888888888888888
Q ss_pred HHHHHHHhhhcCC
Q 012111 453 LENKMIAMKENSG 465 (471)
Q Consensus 453 ~~~~m~~~~~~~~ 465 (471)
.|+.++++.++..
T Consensus 698 ~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 698 AFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHhcCCCCh
Confidence 8888888777643
No 374
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.77 E-value=16 Score=23.41 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 012111 95 QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
+...++++.++.. ..|..-.-.+|.+|...|++++|.+.++.+..
T Consensus 7 ~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444432 34444455566666666666666666666543
No 375
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.26 E-value=1.5e+02 Score=30.55 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=27.6
Q ss_pred HHHHHhhcHHHHHHHHHHhhhccCccCCh--hHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 012111 86 DEAIKQKKWQLALKIFGLLRQQQWYQARC--QTFTKLMVMLGKCKQPEQASLLFEVML 141 (471)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~ 141 (471)
+.+...|+++.|+++-..- |+. .++..-...|.+.+++..|-+++.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~-------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR-------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCC-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3445667777766653222 221 234444556666777777777776663
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.15 E-value=33 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 283 (471)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (471)
.|+...|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555554443
No 377
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.94 E-value=58 Score=25.25 Aligned_cols=80 Identities=10% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSL 367 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 367 (471)
.+.++......+.+.....+++.+.... -..+...|.+++.+..+..- .--+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555555555555442110 01133345555555543333 23344455555544455555555555
Q ss_pred HHHHHh
Q 012111 368 VSAYSK 373 (471)
Q Consensus 368 i~~~~~ 373 (471)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.85 E-value=65 Score=27.33 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHHH--HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 76 LWPKPVLEALDEAI--KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT 153 (471)
Q Consensus 76 ~~~~~~~~~l~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (471)
..|..+...++.+- ..+++++|++.+-.-. ..|+ ....++..+...|+...|..+++...-. ..+.....
T Consensus 74 ~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~ps----~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~ 145 (226)
T PF13934_consen 74 GIPPKYIKFIQGFWLLDHGDFEEALELLSHPS----LIPW--FPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALT 145 (226)
T ss_pred CCCHHHHHHHHHHHHhChHhHHHHHHHhCCCC----CCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHH
Confidence 44556666666553 4577888888773321 1221 2235777788889999999998876532 22334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 012111 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196 (471)
Q Consensus 154 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (471)
.++.. ...+.+.+|...-+.... .-....+..++..+.
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~----~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPD----ELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCch----hhhHHHHHHHHHHHH
Confidence 44444 567889999888877765 122445666666655
No 379
>PRK10941 hypothetical protein; Provisional
Probab=66.39 E-value=91 Score=27.31 Aligned_cols=78 Identities=9% Similarity=-0.045 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 012111 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGY 230 (471)
Q Consensus 152 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~ 230 (471)
.+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3456677888888888888888887632 3344455556666888888888888888776542 234444444445444
Q ss_pred H
Q 012111 231 G 231 (471)
Q Consensus 231 ~ 231 (471)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.91 E-value=80 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 439 QAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
....+.|+.++|.+.|.+++..+.
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344455555555555555554443
No 381
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.57 E-value=38 Score=29.19 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012111 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSD----G-LKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175 (471)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 175 (471)
.....+..-|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+..+.+--++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34445666677777777777777766421 2 2334555666677777777777766655444
No 382
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=64.98 E-value=1.1e+02 Score=27.62 Aligned_cols=80 Identities=4% Similarity=-0.025 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 273 EKMEKWYNEFNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348 (471)
Q Consensus 273 ~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 348 (471)
+.|.+.|++....+. ..+......++....+.|+.+.-..+++..... .+......++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 344455555444311 223333444444444555544433343333332 2444455555555555565555555
Q ss_pred HHHHHHc
Q 012111 349 FKKMKHR 355 (471)
Q Consensus 349 ~~~m~~~ 355 (471)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555553
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.87 E-value=29 Score=23.47 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSI 383 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~ 383 (471)
..+.++|+..|....+.-..+. -.++..++.+++..|++++.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444322211 12344455555555555554443
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.86 E-value=47 Score=25.81 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 315 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
..+.+.|..++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443333 12344444444444555555555555544444444444444444443
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.60 E-value=1e+02 Score=27.19 Aligned_cols=41 Identities=15% Similarity=-0.001 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012111 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244 (471)
Q Consensus 202 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (471)
..|.++|.-+..+. -...+-..++.++....+..+|...+.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 45677776665541 122333445555555555555554443
No 386
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.42 E-value=1e+02 Score=27.27 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKME 346 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~ 346 (471)
..+|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 445777777777777766543
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.07 E-value=51 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=6.1
Q ss_pred HhcCCHHHHHHHHH
Q 012111 160 GQSGLLDEAFSTIN 173 (471)
Q Consensus 160 ~~~~~~~~a~~~~~ 173 (471)
...|++++|..+.+
T Consensus 50 mNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 50 MNRGDYQSALQLGN 63 (115)
T ss_pred HccchHHHHHHhcC
Confidence 33444444444443
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.06 E-value=1.4e+02 Score=28.68 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 012111 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 261 (471)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (471)
..|.....+++..+.......-+..+..+|...| -+...|..++.+|... ..+.-..+|+++.+-. -.|+..-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHH
Confidence 4555666667777777666777777777776664 2556666677777666 4555566666665542 333333334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 012111 262 MISAYGNSGNIEKMEKWYNEFNLMGVKA--D---IQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIET 335 (471)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 335 (471)
|...|.+ ++...+..+|.++..+-++. + ...|..+.... ..+.|....+...++.. |..--...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444433 66666666666654432210 0 11222222211 23445555555555432 222223344444455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 369 (471)
|....++++|++++..+.+.. .-|...-..++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 555666666666666555543 223333344443
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.81 E-value=1.4e+02 Score=28.43 Aligned_cols=99 Identities=13% Similarity=0.020 Sum_probs=73.1
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 76 LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL 155 (471)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (471)
-.|..+..........|.++.+.+.+..+... +.....+...+++...+.|++++|..+-+-|....+. +.++....
T Consensus 321 ~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~ia 397 (831)
T PRK15180 321 QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVA 397 (831)
T ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeee
Confidence 34444444444556789999999999887765 3456678889999999999999999999999987766 55555544
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 012111 156 VSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 156 i~~~~~~~~~~~a~~~~~~~~~ 177 (471)
....-..|-++++.-.++++..
T Consensus 398 a~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 398 AGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred cccHHHHhHHHHHHHHHHHHhc
Confidence 4444456678888888877754
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.76 E-value=21 Score=31.34 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012111 180 DCKPDVYT-YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 223 (471)
Q Consensus 180 ~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 223 (471)
.+.|+..+ |+..|....+.||+++|++++++.++.|..--..+|
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34455554 567888888888888888888888888865333333
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.86 E-value=54 Score=23.46 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=21.7
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286 (471)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (471)
+...|++++|..+.+.. ..||...|.+|.. .+.|-.+.+...+..|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34445555555444333 3445444444433 23444444444444444433
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.82 E-value=27 Score=32.77 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 83 EALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 162 (471)
Q Consensus 83 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (471)
..+..+.+.+.++.|+.++.++.+.. +-.+..|..-..++.+.+++..|+.=+...++.... -...|-.=..++.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhH
Confidence 44666778999999999999999864 334445555557889999999999888888776411 223343334555666
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 012111 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (471)
+.+.+|+..|+.... +.|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK---LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhh---cCcCcHHHHHHHHHHH
Confidence 778888888888775 4677666666665543
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.59 E-value=1.3e+02 Score=27.86 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
..+.-+...|..+|+++.|.+.|.+..+--- .+..+..|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4556677777778888888888777543210 012234455566666667777777766666654
No 394
>PRK10941 hypothetical protein; Provisional
Probab=62.14 E-value=1.1e+02 Score=26.81 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
.+-.+|.+.++++.|+.+.+.+..-. +.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34455566666666666666665542 23333344444556666666666665555543
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.58 E-value=56 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998887
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.51 E-value=1.6e+02 Score=28.39 Aligned_cols=181 Identities=11% Similarity=0.073 Sum_probs=101.5
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 190 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (471)
+.|....-+++..+.......-+..+-.+|...|- +-..|-.++.+|... ..+.-..+++++.+ .. --|+..-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve-~d-fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVE-YD-FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hc-chhHHHHHH
Confidence 44555666777777777777777777777777643 566677777777776 55666777777666 22 123333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 012111 191 LIKSCTKFHRFDLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265 (471)
Q Consensus 191 ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (471)
|...|-+ ++.+.+...|......=++. -...|..+...- ..+.+....+...+....|...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333333 66666666666665432210 012333333221 234555555555555554444445555555566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300 (471)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 300 (471)
|....++++|++++..+.+.+ ..|...-..++..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 666667777777776665544 3444444444443
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.09 E-value=2.2e+02 Score=29.86 Aligned_cols=187 Identities=11% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGV---KADIQTLNILTKSYGRAGMY--DKMRSVMDFMQKRFFFPTVVTYN-- 330 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 330 (471)
-|..|+..|...|+.++|+++|.+..+..- ..-..-+..++..+.+.+.. +-.++.-+...+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 366677777777777777777777655220 01111222344444444433 33333333332221110000000
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHH-----HHHH
Q 012111 331 ----------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--------IMKVDSI-----LRQV 387 (471)
Q Consensus 331 ----------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--------~~~a~~~-----~~~~ 387 (471)
.-+-.|......+-+..+++.+....-.++....+.++..|.+.=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1122345556667777788877766555566666666666654311 1122222 1111
Q ss_pred Hh--CCCCc--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------CCCCCHHHHHHHHHHHHhc
Q 012111 388 EN--SDVIL--------DTPFFNCIISAYGQAGDVEKMGELFLTMKER-------------HCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 388 ~~--~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 444 (471)
.+ ....| ....|....-.+.+.|+.++|+.++-..... ...++...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 11111 1222333333344778888888776544431 1234666777777766554
No 398
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.08 E-value=33 Score=20.51 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=13.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCI 402 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (471)
+.|-+.++..++++|.+.|+..+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444445555444444444444443
No 399
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.05 E-value=1.1e+02 Score=26.06 Aligned_cols=92 Identities=9% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------------CCCCCHHHHHHHH
Q 012111 266 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR------------FFFPTVVTYNIVI 333 (471)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~li 333 (471)
|.+..+..-..++.+-....++..+..-..+++ +...|++.+|...++.-... --.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444445555555555555554444433 44566766666655433221 1234555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHRGMKPN 360 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~p~ 360 (471)
..|. .+++++|.+++..+-+.|+.|.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 4433 3566666666666666666553
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.94 E-value=1.2e+02 Score=28.42 Aligned_cols=209 Identities=14% Similarity=0.066 Sum_probs=102.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHhc
Q 012111 194 SCTKFHRFDLIEKILAEMSYLGIECSAVT--YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF--TLNSMISAYGNS 269 (471)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 269 (471)
..+..|+.+.+ +.+.+.|..++... ....+...+..|+.+-+.- +.+.+ ..|+.. .....+...+..
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~----Ll~~g-a~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL----LMKHG-AIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHH----HHhCC-CCccccCCCcccHHHHHHHC
Confidence 34455676544 44455687776543 2344555567777764433 33333 333321 112345556678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHH
Q 012111 270 GNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT--YNIVIETFGKAGHIEK 344 (471)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 344 (471)
|+.+.+..+++. |...+.. .-...+...+..|+.+-+ +.+.+.|..|+... -...+...+..|+.+-
T Consensus 79 g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 79 GDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKLDIM----KLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 888776665543 3211110 112234445566766444 44455565544321 1223444556777655
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH---HHHHHHHHHhcCCHHHHHHH
Q 012111 345 MEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---FNCIISAYGQAGDVEKMGEL 418 (471)
Q Consensus 345 a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~ 418 (471)
+.. +.+.|..++. .-.+. +...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+ +
T Consensus 151 v~~----Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----i 217 (413)
T PHA02875 151 IEL----LIDHKACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----I 217 (413)
T ss_pred HHH----HHhcCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----H
Confidence 444 3445544332 22223 33344556655 4444555665554322 123444344556654 4
Q ss_pred HHHHHhCCCCCCHH
Q 012111 419 FLTMKERHCVPDNI 432 (471)
Q Consensus 419 ~~~~~~~~~~p~~~ 432 (471)
.+.+.+.|..++..
T Consensus 218 v~~Ll~~gad~n~~ 231 (413)
T PHA02875 218 VRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHCCcCcchH
Confidence 55556677777754
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.46 E-value=43 Score=23.54 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=27.6
Q ss_pred HHHhhcHHHHHHHHHHh----hhccCccC----ChhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 012111 88 AIKQKKWQLALKIFGLL----RQQQWYQA----RCQTFTKLMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 88 ~~~~~~~~~A~~~~~~~----~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
..+.|++..|++.+... ..... .. -....-.+.......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~-~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNN-SSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34677777775544443 33321 11 012223344445566777777776666554
No 402
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.35 E-value=58 Score=32.11 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCcCHHHHHHH
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIM------KVDSILRQVENSDVILDTPFFNCI 402 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 402 (471)
.|..+|...|++..+..+++...... -+.-...||..|+.+.+.|.++ .|.+.+++.. +.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67888888888888888888877542 2223456777777777777654 2334444433 33466677766
Q ss_pred HHHHHh
Q 012111 403 ISAYGQ 408 (471)
Q Consensus 403 ~~~~~~ 408 (471)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 403
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.27 E-value=17 Score=32.41 Aligned_cols=94 Identities=13% Similarity=-0.008 Sum_probs=56.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 417 (471)
..|.++.|++.+...+... ++....|..-.+++.+.+....|++-+......+.. ...-|-.=-.+-...|+|.+|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4566777777777766653 445555666666677777777777777666655433 22222222233344577777777
Q ss_pred HHHHHHhCCCCCCHHH
Q 012111 418 LFLTMKERHCVPDNIT 433 (471)
Q Consensus 418 ~~~~~~~~~~~p~~~~ 433 (471)
.|....+.++.+....
T Consensus 204 dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 204 DLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHhccccHHHHH
Confidence 7777777665544433
No 404
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.11 E-value=1.4e+02 Score=26.97 Aligned_cols=59 Identities=10% Similarity=0.280 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHR---GMKPNSITYC--SLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
.++...-+.++.++|+++++++.+. --.|+...|. .+..++...|+..++.+++++..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444455566777777777777654 1244555443 344455566777777777766654
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.95 E-value=97 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 012111 157 SAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~ 177 (471)
-.|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555666666666555544
No 406
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.66 E-value=58 Score=25.31 Aligned_cols=50 Identities=6% Similarity=0.140 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 012111 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 398 (471)
Q Consensus 348 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 398 (471)
+.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344455556555443 33455555555555666666666666555544433
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.64 E-value=73 Score=31.48 Aligned_cols=94 Identities=7% Similarity=0.021 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcc-CccCChhHHHHHHHHHhcCCCHH------HHHHHHHHHHhCCCCCCHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQ-WYQARCQTFTKLMVMLGKCKQPE------QASLLFEVMLSDGLKPSVDVY 152 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~ 152 (471)
.+..++.+|+..|++..+.++++.+...+ +-+.-...||..++...+.|.++ .|.+++++.. +.-|..||
T Consensus 30 ~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~ 106 (1117)
T COG5108 30 GTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTY 106 (1117)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHH
Confidence 45588899999999999999999887653 11233567888888888888765 3444554444 34577788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 012111 153 TALVSAYGQSGLLDEAFSTINDMK 176 (471)
Q Consensus 153 ~~li~~~~~~~~~~~a~~~~~~~~ 176 (471)
..|+++-...-+-....-++.++.
T Consensus 107 all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 107 ALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHHhhcChHhHHhccHHHHHHH
Confidence 877776554333333334444443
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.20 E-value=1.6e+02 Score=27.27 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 116 TFTKLMVMLGKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
.+.-+...|..+|+++.|.+.|-+....- .+-....|-.+|..-...|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45566666666777777777766644321 111234455555555666666666655555544
No 409
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.73 E-value=1.2e+02 Score=25.57 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 012111 322 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSITY--CSLVSAYSKAGLIMKVDSILRQVENSDVILDT 396 (471)
Q Consensus 322 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (471)
+.+...-++.|+--|.-...+.+|-+.|.. ..|+.| +..++ ..-|......|+++.|.+....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344555666666666666666666666643 344444 33333 34566677888888888877776543333343
Q ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHHHH
Q 012111 397 PFFNCIIS----AYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 397 ~~~~~l~~----~~~~~g~~~~a~~~~~~~~ 423 (471)
..+-.|.. -+.+.|..++|+++.+.-.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 23222221 2345667777777665443
No 410
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.69 E-value=1.9e+02 Score=27.72 Aligned_cols=41 Identities=7% Similarity=-0.092 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (471)
.-.|...|+.-.|.+.|.+.... +.-++..|..|..+|+-.
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 44677889999999999888875 667899999999888643
No 411
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.55 E-value=59 Score=31.57 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 418 (471)
.|+...|...+.........-..+....|.+...+.|....|..++.+..... ...+.++-.+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555544433111112223344444445555555555555544433 22344445555555555566666665
Q ss_pred HHHHHh
Q 012111 419 FLTMKE 424 (471)
Q Consensus 419 ~~~~~~ 424 (471)
|+...+
T Consensus 699 ~~~a~~ 704 (886)
T KOG4507|consen 699 FRQALK 704 (886)
T ss_pred HHHHHh
Confidence 555554
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.54 E-value=87 Score=27.73 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----------cCCHHHH
Q 012111 346 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----------AGDVEKM 415 (471)
Q Consensus 346 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 415 (471)
.++|+.|.+.++.|.-..+..+.-.+...=.+.....+|+.+.. |..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45677777777777777777777677777777777777777764 23335556655553 4666666
Q ss_pred HHHHH
Q 012111 416 GELFL 420 (471)
Q Consensus 416 ~~~~~ 420 (471)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66655
No 413
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.40 E-value=65 Score=22.34 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=15.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 412 (471)
..|+.+.|.+++..+. .|+ ..|...+.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCch
Confidence 3344455555555444 322 1344444444444443
No 414
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.25 E-value=2.3e+02 Score=28.56 Aligned_cols=188 Identities=11% Similarity=0.126 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhhccCccCC--hhHHHHHHHHHh-cCCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCH
Q 012111 94 WQLALKIFGLLRQQQWYQAR--CQTFTKLMVMLG-KCKQPEQASLLFEVMLSDGLKPSVD-----VYTALVSAYGQSGLL 165 (471)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~~~~ 165 (471)
...|++.++.+.+....+|. ..++-.+...+. ...+++.|...+++.....-.++.. +...++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34678888887754434443 345566666665 6789999999999775543233322 233456777777765
Q ss_pred HHHHHHHHHhhcCCC---CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--ccCCH
Q 012111 166 DEAFSTINDMKSVSD---CKPDVYTYSIL-IKSCTKFHRFDLIEKILAEMSYLG---IECSAVTYNTIIDGYG--KAKKF 236 (471)
Q Consensus 166 ~~a~~~~~~~~~~~~---~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~--~~~~~ 236 (471)
. |...+++..+... ..+-...|..+ +..+...++...|.+.++.+...- ..+...++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 8888877665321 11222333333 333333478999999988776432 2333444444554443 45656
Q ss_pred HHHHHHHHHHHHcC--------CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESG--------GCHPDIFTLNSMISAY--GNSGNIEKMEKWYNEF 282 (471)
Q Consensus 237 ~~a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 282 (471)
+++.+.++.+.... ...|...+|..++..+ ...|+++.+...++++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777776663221 0134456677776654 4567766766666555
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.89 E-value=27 Score=30.66 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 399 FNCIISAYGQAGDVEKMGELFLTMKERHCV 428 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 428 (471)
|+..|..-.+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 416
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.60 E-value=2.6e+02 Score=29.83 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 012111 257 FTLNSMISAYGNSG--NIEKMEKWYNEFNLM 285 (471)
Q Consensus 257 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 285 (471)
.-...++.+|.+.+ ++++|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34556777777777 777777777777654
No 417
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.30 E-value=9.1 Score=34.01 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=65.0
Q ss_pred HHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 88 AIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
+...|.++.|++.|......+ ++....|..-..++.+.++...|++=++...+.+.. +..-|-.--.+....|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHH
Confidence 446788889999998888875 677777888888888888888888888777765322 22334444445555778888
Q ss_pred HHHHHHHhhcCCCCCCC
Q 012111 168 AFSTINDMKSVSDCKPD 184 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~ 184 (471)
|-..|....+ .++.+.
T Consensus 201 aa~dl~~a~k-ld~dE~ 216 (377)
T KOG1308|consen 201 AAHDLALACK-LDYDEA 216 (377)
T ss_pred HHHHHHHHHh-ccccHH
Confidence 8887777776 344433
No 418
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=54.97 E-value=33 Score=18.51 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 411 DVEKMGELFLTMKERHCVPDNITFATM 437 (471)
Q Consensus 411 ~~~~a~~~~~~~~~~~~~p~~~~~~~l 437 (471)
.++.|..+|++++. +.|++.+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 45677777777776 45777776543
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.60 E-value=1.5e+02 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 012111 439 QAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
--|.-.|+...|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4467788999999988888876
No 420
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.05 E-value=1.5e+02 Score=26.01 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCCCcccCCCCCCCC-chhhhhhccCCCCCccchhhhhhhhHHHHHHHhhHHHHHHHHHhhh--hhhccCCCchHHHHHH
Q 012111 9 TPPTTATHLPKFYKE-PVFRIQAIKRSPGPIQELGIQKEAEKDLSKILRTEFAIKNIEKKVS--SKKYKNLWPKPVLEAL 85 (471)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 85 (471)
|+.++.+++|...-+ ..|-.+.++-..+.... ...|.+.++.+..-....-..+ +.+....+-+-=...+
T Consensus 12 t~~~~~~~vp~l~vs~~~fll~~~kl~n~~~ka-------~e~l~~~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~ 84 (412)
T COG5187 12 TPMDFDFQVPTLLVSDAIFLLHGTKLGNPESKA-------LEHLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRM 84 (412)
T ss_pred ccCchhccCCceehhhHHHHhcccccCChhhHH-------HHHHHHHHHHhhhhHHHHHHHhccCCcccchheehhhHHH
Q ss_pred HHHHHhhc--HHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHH
Q 012111 86 DEAIKQKK--WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD----GLKPSV-DVYTALVSA 158 (471)
Q Consensus 86 ~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~ 158 (471)
..+++.+. .++--+-.+.....+|-....+++..+...|++.++.+.+.++..+..+. |.+.|+ .+-..|.-.
T Consensus 85 n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~ 164 (412)
T COG5187 85 NTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLI 164 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHh
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
|....-+++-++..+.|.+..|.--...-|...-..++-.. ++.+|-.++-+....=-......|...++...-+|
T Consensus 165 y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 165 YGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred hccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.41 E-value=74 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=19.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 126 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168 (471)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 168 (471)
..|+.+.|.+++..+. +|. ..|...+.++-..|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 4455666666666655 422 2455555555555544433
No 422
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.32 E-value=76 Score=22.19 Aligned_cols=33 Identities=12% Similarity=-0.086 Sum_probs=15.6
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD 143 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 143 (471)
|.|...-..+...+...|++++|.+.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555443
No 423
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=52.94 E-value=80 Score=22.98 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 012111 331 IVIETFGKAGHIEKMEEYFKKM 352 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m 352 (471)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 424
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.59 E-value=1.3e+02 Score=24.67 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
.++..|-+..+|.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777766653
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.41 E-value=90 Score=22.78 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 259 LNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
|..|+..|...|.+++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66777777777777777777777655
No 426
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.31 E-value=1.4e+02 Score=25.13 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=33.2
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHhh
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP---SVDVYT--ALVSAYGQSGLLDEAFSTINDMK 176 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~--~li~~~~~~~~~~~a~~~~~~~~ 176 (471)
.+...-++.|+--|.-...+.+|...|.. +.|+.+ +...++ .-|+.....|+.+.|++....+.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 34444555555555555555555555543 233333 233322 34555566777777776666553
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.25 E-value=94 Score=26.82 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 400 NCIISAYGQAGDVEKMGELFLTMKE----RHC-VPDNITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 400 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
-.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.=++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3456667777888888877776642 222 2334555566677777888777766655543
No 428
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.18 E-value=3.4e+02 Score=29.35 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF--PT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----IT 363 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~ 363 (471)
.+-|..+++.+-+.+..+.+.++-....+.-.. |+ ..+++.+.......|.+-+|...+- + .||. ..
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~---npdserrrdc 1056 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R---NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c---CCcHHHHHHH
Confidence 345778888888889999888887776664221 22 2356677777777788777765543 2 3443 34
Q ss_pred HHHHHHHHHhcCCHH------------HHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 364 YCSLVSAYSKAGLIM------------KVDS-ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 420 (471)
Q Consensus 364 ~~~li~~~~~~g~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 420 (471)
...++..++.+|.++ +... +++..-+..+......|+.|..-+...+++.+|-.+.-
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 556666677776654 3333 33333333333234456666666677888888776543
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.33 E-value=37 Score=31.88 Aligned_cols=101 Identities=14% Similarity=-0.002 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYC-SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 414 (471)
+...+.++.|..++.+.++. .||-..|- .=..++.+.+++..|..-+..+++..+. ....|..=..++.+.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHH
Confidence 34445666666666666664 44433332 2225566666666666666666655422 12222222233334444555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 415 MGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 415 a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
|...|+.... +.|+..-....+.-|
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5555555444 456666555555444
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.19 E-value=2.1e+02 Score=26.68 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 012111 299 KSYGRAGMYDKMRSVMDFMQKRFFFPTVV--TYNIVIETFGK--AGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~~ 355 (471)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445777888888888887776 444443 34444455443 45677777777776654
No 431
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.72 E-value=1.3e+02 Score=26.64 Aligned_cols=71 Identities=6% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hcCCHHHH
Q 012111 311 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS----------KAGLIMKV 380 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----------~~g~~~~a 380 (471)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+++.+|+.+..... -|..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34566666666666666666666666666666677777776665322 2444444443 23666666
Q ss_pred HHHHHH
Q 012111 381 DSILRQ 386 (471)
Q Consensus 381 ~~~~~~ 386 (471)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666553
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.25 E-value=38 Score=17.32 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 410 GDVEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 410 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
|+.+.|..+|+++... ++-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 3455666666666653 223444444443
No 433
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.44 E-value=1.1e+02 Score=24.57 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=41.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 012111 350 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413 (471)
Q Consensus 350 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 413 (471)
+.+...|++.+..- ..++..+...++.-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33456677766543 3455555556666778888888888777767666656667777777543
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.27 E-value=2.8e+02 Score=27.03 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 012111 153 TALVSAYGQSGLLDEAFSTINDMK 176 (471)
Q Consensus 153 ~~li~~~~~~~~~~~a~~~~~~~~ 176 (471)
..++.-|.+.+++++|+.++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 345667777888888888877775
No 435
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.81 E-value=54 Score=21.27 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012111 183 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 183 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 232 (471)
|....++.++..+++..-.+.++..+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666653 355555555544443
No 436
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.41 E-value=24 Score=26.73 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 370 (471)
.|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34555677777777777776653 5555543
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.39 E-value=2e+02 Score=24.69 Aligned_cols=100 Identities=16% Similarity=-0.013 Sum_probs=56.2
Q ss_pred HhhcHHHHHHHHHHhhhccCccCCh-hHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARC-QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV-YTALVSAYGQSGLLDE 167 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~ 167 (471)
...++..|+..|..+... .|++ .-|+.-+.++.+.++++.+..--...++. .|+..- .-.+..++.....++.
T Consensus 22 ~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred chhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 345667777777777764 3554 44566666777777777776655555543 444332 3334455556667777
Q ss_pred HHHHHHHhhcC---CCCCCCHHHHHHHHHH
Q 012111 168 AFSTINDMKSV---SDCKPDVYTYSILIKS 194 (471)
Q Consensus 168 a~~~~~~~~~~---~~~~~~~~~~~~ll~~ 194 (471)
|+..+.+.... ....+.......|..+
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77766665321 2233334444444444
No 438
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=45.15 E-value=1.1e+02 Score=21.79 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 012111 49 KDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQ 107 (471)
Q Consensus 49 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 107 (471)
..|..++........+..++...-.....+..+..++..+.+.|..-....+...+.+.
T Consensus 11 ~lL~~lL~~~~~~~~i~~~L~~e~F~~~~h~~If~~i~~l~~~~~~id~~~v~~~l~~~ 69 (103)
T PF00772_consen 11 ALLGALLNDPEAIDEIIDKLSPEDFYDPAHRRIFEAILELYREGEPIDPITVAEELSDE 69 (103)
T ss_dssp HHHHHHHHSCCHHHHHHTT-SGGGSSSHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHT
T ss_pred HHHHHHHcChHHHHHHhccCCHHHhCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 33445555555555555555544444445566667777777777666666666666544
No 439
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.13 E-value=1.4e+02 Score=23.87 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=36.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
+.+.|+..+..-. .++..+...++.-.|.++++.+.+.+..++..|....+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455555444432 344444444555667777777777776667666666677777666543
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.72 E-value=26 Score=26.51 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012111 199 HRFDLIEKILAEMSYLGIECSAVTYNTIID 228 (471)
Q Consensus 199 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 228 (471)
|.-..|-.+|..|++.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4555666777777777766654 444443
No 441
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.39 E-value=84 Score=20.40 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 373 (471)
....++.++..++...-.++++..+.++...|. .+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 344455555555555555566666666655552 344444444444443
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.29 E-value=1.2e+02 Score=22.03 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (471)
..++|..+.+.+...+. ....+--+-+..+...|++++|+. . ......||...|.+|-. .+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl---~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL---L--PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH---H--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH---h--cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 44555555555555442 122222222334455566666511 1 11113455555544432 3555555555555
Q ss_pred HHHHhCC
Q 012111 280 NEFNLMG 286 (471)
Q Consensus 280 ~~~~~~~ 286 (471)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 5554443
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.23 E-value=42 Score=28.22 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+.++.+.+.+++.+....-+. ....|-.+...-.+.|+++.|.+-|++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 344444455555544443332 333444444444445555555555544444
No 444
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.09 E-value=85 Score=20.10 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=3.2
Q ss_pred CCHHHHHHHH
Q 012111 410 GDVEKMGELF 419 (471)
Q Consensus 410 g~~~~a~~~~ 419 (471)
|++=+|-+++
T Consensus 13 g~f~EaHEvl 22 (62)
T PF03745_consen 13 GDFFEAHEVL 22 (62)
T ss_dssp T-HHHHHHHH
T ss_pred CCHHHhHHHH
Confidence 3333333333
No 445
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.01 E-value=2.3e+02 Score=25.02 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----c
Q 012111 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----S 269 (471)
Q Consensus 198 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 269 (471)
.+++..+...+......+ +......+...|.. ..+...|.++|....+.+ .......|...|.. .
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCcc
Confidence 455666666666665543 12233333333322 234556666666554432 22223333333333 2
Q ss_pred CCHHHHHHHHHHHHhCC
Q 012111 270 GNIEKMEKWYNEFNLMG 286 (471)
Q Consensus 270 ~~~~~a~~~~~~~~~~~ 286 (471)
.+..+|..+|+.....|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 25555555555555554
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.87 E-value=2.7e+02 Score=25.93 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChh--HHHHHHHHHh--cCCCHHHHHHHHHHHHh
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQ--TFTKLMVMLG--KCKQPEQASLLFEVMLS 142 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 142 (471)
+..+...+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444566666666666666654 233222 3333333333 23455566666665544
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.81 E-value=2.1e+02 Score=24.61 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=12.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 012111 333 IETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~ 353 (471)
..-+.+.|++.+|...|.+.+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHH
Confidence 344555666666666666543
No 448
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.24 E-value=1.5e+02 Score=22.99 Aligned_cols=62 Identities=10% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012111 350 KKMKHRGMKPNSITYCSLVSAYSKA-GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412 (471)
Q Consensus 350 ~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 412 (471)
+.+.+.|++++.. -..++..+... +..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455667666544 33444445443 45667888888887777666666655556666666644
No 449
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.98 E-value=74 Score=31.57 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH
Q 012111 270 GNIEKMEKWYNEFNLMGVKADIQT 293 (471)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~~ 293 (471)
|++.+|.+.+-.+...+..|...-
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp ------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHH
Confidence 444455444444444444444333
No 450
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.71 E-value=4.8e+02 Score=28.36 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 012111 437 MIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
+++.|..-++..+|..+..+.++
T Consensus 1376 llrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1376 LLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555444443
No 451
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.54 E-value=2.6e+02 Score=25.24 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC----HH
Q 012111 150 DVYTALVSAYGQSGLLDEAFSTINDMKSV---SDCKPDVYTYSILIKSCT-KFHRFDLIEKILAEMSYLGIECS----AV 221 (471)
Q Consensus 150 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~----~~ 221 (471)
..+-....-|++.|+-+.|.+.+.+..+. -|.+.|+..+.+-+..+. ...-..+-++..+.+.+.|-..+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34444555667777777666665543321 344555555444333322 22223333444444444443222 22
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVE 248 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (471)
+|..+-. ....++.+|-.+|-....
T Consensus 185 vY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 3332222 233566666666665543
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.94 E-value=1.5e+02 Score=22.35 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 012111 204 IEKILAEMSYLGIECS-AVTYNTIIDGYGKAKKFEEMESSFS 244 (471)
Q Consensus 204 a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (471)
..++|..|...|+-.. +..|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666654433 2334444555556666666666654
No 453
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.90 E-value=1.1e+02 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCCC
Q 012111 443 ALGMTEAAQNLENKMIAMKENSGKK 467 (471)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~~~~~ 467 (471)
..++...|..+++++..++++-+-+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK 214 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVK 214 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChH
Confidence 3457789999999999999876643
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.77 E-value=2.6e+02 Score=25.14 Aligned_cols=171 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHH
Q 012111 41 LGIQKEAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKL 120 (471)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (471)
....++........-|..+..+++......-.-++--...+..+... ..--..+|.++|+.+.+.+ ..+|+
T Consensus 181 ~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~-----e~~yr-- 251 (556)
T KOG3807|consen 181 TDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG-----ETIYR-- 251 (556)
T ss_pred ccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH-----HHHHh--
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 012111 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200 (471)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 200 (471)
+..+...--...+.+.+++...-+..-..|..+..+.|+..+|.+.|+.+.+...+..-......++.++....-
T Consensus 252 -----~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 252 -----QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred -----hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 012111 201 FDLIEKILAEMSYLGIECSAVTYNT 225 (471)
Q Consensus 201 ~~~a~~~~~~~~~~g~~~~~~~~~~ 225 (471)
+..+..++.+..+...+.+......
T Consensus 327 YADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 327 YADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHHHHhhccccCcchHHHHHH
No 455
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=41.54 E-value=26 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.7
Q ss_pred hhcHHHHHHHHHHhhhccCccCCh
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARC 114 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~ 114 (471)
.-+++.|+..|..+...+.+|++.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 457899999999999877677764
No 456
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.42 E-value=2.6e+02 Score=24.90 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 358 KPNSITYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~a~~ 382 (471)
..|+..|..+..+|.-.|+.+.+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 4567778888888877777666553
No 457
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.38 E-value=1.7e+02 Score=22.76 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 316 FMQKRFFFPTVVTYNIVIETFGKA-GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.+.+.|...+..- ..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455566554443 2344444443 45667888888888877666777777777777777754
No 458
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=41.21 E-value=3.5e+02 Score=26.44 Aligned_cols=29 Identities=0% Similarity=0.022 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012111 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECS 219 (471)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 219 (471)
.++.+..+ ++...|+.+++++...|..|.
T Consensus 263 ~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 263 EFVEYIIH-RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444433 788888888888888876544
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.19 E-value=70 Score=23.44 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012111 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 412 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 412 (471)
.++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555566666777777777766666666655556666666654
No 460
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.54 E-value=3.2e+02 Score=29.78 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=15.7
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHH
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLF 137 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (471)
++....|..+...+-+.++.++|...=
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 344455666666666666666665543
No 461
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.52 E-value=2.1e+02 Score=23.56 Aligned_cols=184 Identities=14% Similarity=0.070 Sum_probs=104.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012111 285 MGVKADIQTLNILTKSYGRAG----MYDKMRSVMDFMQKRFFFPTVV----TYNIVIETFGKAGHIEKMEEYFKKMKHRG 356 (471)
Q Consensus 285 ~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (471)
.|...+...++.++..+.+.. +++.+..+=.+....++.++-. ....-+..|-..|++.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 467788888998888876543 4555555555555555554433 23333566778888888888887665432
Q ss_pred CCCC-HHHH-HHHHHHHHhcCCHHHH--HHHHHHHHhCCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 357 MKPN-SITY-CSLVSAYSKAGLIMKV--DSILRQVENSDVILDT-------PFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 357 ~~p~-~~~~-~~li~~~~~~g~~~~a--~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
-.++ ...+ ..+..++.+.-.-..+ ...|.+..-.++..|. .+=-.++..|-+..+|.+..++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1111 2222233222110111 1112222222222121 12334566788888999999999988753
Q ss_pred --------CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCCCccCC
Q 012111 426 --------HC------VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 471 (471)
Q Consensus 426 --------~~------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~c 471 (471)
|+ .+--...+.....|.+.|..|.|..+++ +.+---+..+|.|
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~t~lWPC 218 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIISTPLWPC 218 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeecCCCCCC
Confidence 22 2333456777788999999999999887 3444445555555
No 462
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.38 E-value=1.4e+02 Score=21.63 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 012111 262 MISAYGNSGNIEKMEKWYNEF 282 (471)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~ 282 (471)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444445555555555543
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.33 E-value=2.8e+02 Score=25.02 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHH----
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEF----NLMGVKADIQTLNILTKS-YGRAGMYDKMRSVMDFMQKRFFFPTVV---- 327 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 327 (471)
..+.....-||+.||.+.|.+.+.+- ...|.+.|+..+..-+.. |....-..+-.+..+.+.+.|...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45556667788888888888777654 334666676655443333 223333344444455555555543332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
+|..+- +....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 333332 23446788888887776644
No 464
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.12 E-value=89 Score=19.23 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=11.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 440 AYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
++.+.|++++|++..+.+++..|+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHhhhHHHHHHHHHHHHhhCCC
Confidence 444444444444444444444443
No 465
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.49 E-value=2.6e+02 Score=24.38 Aligned_cols=59 Identities=7% Similarity=-0.001 Sum_probs=28.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVESGGCHP-----DIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
++.-|.+.|+++.|-.++--+....+... +...-..++......++++-+.++.+-+..
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45555555666665555544433221222 222233444555555666666655555443
No 466
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=39.16 E-value=3.9e+02 Score=26.38 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 94 WQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN 173 (471)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 173 (471)
+..|.++++..... +|.+ .+.-.|++++|+...+.....+...-+.-....+.-++.......-...|+
T Consensus 300 yk~a~KYLR~al~s---~p~v--------lLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e 368 (547)
T PF14929_consen 300 YKYAVKYLRLALQS---NPPV--------LLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLE 368 (547)
T ss_pred HHHHHHHHHHHhcC---CCCe--------EEeccccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHH
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHc-----c---CCHHHHHHHHH
Q 012111 174 DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGK-----A---KKFEEMESSFS 244 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~l~~~~~~-----~---~~~~~a~~~~~ 244 (471)
.+.+ ..|....-..-+....+. ...+.++++.+ ......|...+|.-+...+.+ . .+...+.+++-
T Consensus 369 ~~~~---~~P~~~~~le~l~~~~~~--~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf 443 (547)
T PF14929_consen 369 DCLK---KDPTMSYSLERLILLHQK--DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLF 443 (547)
T ss_pred HHhc---CCCcHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcch
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (471)
.+.+-++...+..+|..+....-+....+-..+.++.
T Consensus 444 ~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~~~W~~ 480 (547)
T PF14929_consen 444 EFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVREEWRS 480 (547)
T ss_pred hcccccccccccHHHHHHHHHhhHhhhhhchHHHHHH
No 467
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=4.5e+02 Score=27.01 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=51.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 012111 121 MVMLGKCKQPEQASLLFEVMLSDGLKP---SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197 (471)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 197 (471)
++-+.+.+.+++|+.+.+..... .+ -.......|..+...|++++|-...-.|.. -+..-|.-.+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhcc
Confidence 44445566666666665554432 22 234455666666666667666666666653 234444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012111 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 198 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 232 (471)
.+.......+ +.......+...|..++..+..
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4443322221 1111112345566666666655
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.32 E-value=2.3e+02 Score=23.47 Aligned_cols=27 Identities=7% Similarity=-0.061 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENS 390 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 390 (471)
.+.++..|.-.|+++.|.++|.-+.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 445555566666666666666665544
No 469
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.90 E-value=3.9e+02 Score=26.27 Aligned_cols=30 Identities=3% Similarity=-0.077 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
+|...+--.+-..|.-.|++++|.+.--..
T Consensus 56 ~~remaaL~~SKvYy~LgeY~~Ai~yAL~a 85 (926)
T COG5116 56 DPREMAALCLSKVYYVLGEYQQAIEYALRA 85 (926)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 333334455556777788888887765444
No 470
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.79 E-value=1.2e+02 Score=20.12 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=25.2
Q ss_pred HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK 128 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (471)
..=+.+.|..++..++... +-++..|+++...+.+++
T Consensus 9 emlDtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHHHHhcchh--hcChHHHHHHHHHHHHcc
Confidence 3445567777777777654 567788888887776553
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.51 E-value=88 Score=22.92 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444455555667777777777766667777777777777776543
No 472
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=37.41 E-value=4.9e+02 Score=27.01 Aligned_cols=316 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhcCC---CCCCCHHHHHHHHHH
Q 012111 119 KLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL-VSAYGQSGLLDEAFSTINDMKSVS---DCKPDVYTYSILIKS 194 (471)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ll~~ 194 (471)
.++..+.++|+.+.|.++..+.... .+-...+-.. +.++.+.-....=.++-.++.... ...|--...-.+|..
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~ 407 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGG 407 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhc
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH------HHHHHHHHHHcCCCCCCHHHHH-----HHH
Q 012111 195 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------MESSFSAMVESGGCHPDIFTLN-----SMI 263 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~-----~l~ 263 (471)
|--..+..+.....+... |-.|+......+..+. -.+.........| |+..+-+ ...
T Consensus 408 cd~~~~~~ev~~tiED~L----------W~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG--~sYFt~ng~~p~~Yf 475 (835)
T KOG2168|consen 408 CDLRRDLPEVADTIEDFL----------WFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYG--ESYFTNNGSQPLLYF 475 (835)
T ss_pred CccccccHHHHhHHHHHH----------HHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhH--HHhhccCCCChHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHI 342 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 342 (471)
.++.-.|.++.|+.++......+ .|.+.+...+.-+.-.+.-....+-+--+......+. ..-+..|+.+|.+.=+.
T Consensus 476 ~~LlLsgqfe~AI~fL~~~~~~~--~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~ 553 (835)
T KOG2168|consen 476 QVLLLSGQFERAIEFLHREEPNR--IDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEY 553 (835)
T ss_pred HHHHHHHhHHHHHHHHHhhcCCc--chhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ--AGDVEKMGELFL 420 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~ 420 (471)
..+...++-..--...+|...-+.++.+.+..=--.+ +.|..+.. .+.||..-...++.-|.. .-...-+.++-+
T Consensus 554 ~d~~~al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG-~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~ 630 (835)
T KOG2168|consen 554 TDTRVALQYYYLLRLNKDPQGSNLFLKCVCELVLETE--EEFDLILG-KIKPDGSREPGLLDEFLPLIEDLQKIILEVAS 630 (835)
T ss_pred ccchhhhheeeeecccCChhHHHHHHHHHHHHHHhcc--ccHHHHhc-ccCCCCCCCcchHhhhccchhhHHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 421 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 421 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
++.+.|. |.--|..|...|+++.|.++..+.+.
T Consensus 631 ~a~~~G~------~~~sI~LY~lag~yd~al~link~LS 663 (835)
T KOG2168|consen 631 EADEDGL------FEDAILLYHLAGDYDKALELINKLLS 663 (835)
T ss_pred HHHhcCC------HHHHHHHHHHhhhhhHHHHHHHHHHH
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.26 E-value=1.8e+02 Score=21.91 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 414 KMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 414 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
.+.++|+.|...|+-- -+..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6666666666655433 3445555556666666666666666553
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.16 E-value=65 Score=23.88 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 445 (471)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445556666666665555555555444445555544
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.07 E-value=2.7e+02 Score=23.86 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 012111 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG-RAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 318 (471)
.++..+...|+++++...++++...+...+..-.+.|..+|- ..|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455666677777777777777777666666666666666653 2344445555554443
No 476
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.92 E-value=2.7e+02 Score=23.84 Aligned_cols=17 Identities=6% Similarity=0.196 Sum_probs=7.8
Q ss_pred cCCHHHHHHHHHHHHHc
Q 012111 339 AGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~ 355 (471)
.+++.+|+++|++....
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444433
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.77 E-value=1.8e+02 Score=21.86 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 012111 203 LIEKILAEMSYLGIECS-AVTYNTIIDGYGKAKKFEEMESSFSA 245 (471)
Q Consensus 203 ~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (471)
.+.++|..|...|+-.. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666665544332 44455555566666666666666653
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.67 E-value=3.7e+02 Score=25.32 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--C-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 187 TYSILIKSCTKFHRFDLIEKILAEMSYL--G-----IECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 187 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
+...|++..+-.||+..|+++++.+.-. + ......++..+.-+|...+++.+|.+.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888888765321 1 12235566777778888888888888887764
No 479
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.32 E-value=3.7e+02 Score=25.25 Aligned_cols=216 Identities=12% Similarity=0.009 Sum_probs=98.7
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChhH--HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQT--FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVD--VYTALVSAYG 160 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 160 (471)
|..+++.|+.+.+..+++ .| ..++... -.+.+...+..|+.+-+. .+.+.|..|+.. .....+...+
T Consensus 6 L~~A~~~g~~~iv~~Ll~----~g-~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 6 LCDAILFGELDIARRLLD----IG-INPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHhCCHHHHHHHHH----CC-CCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHH
Confidence 445567777766555554 22 2333211 233445556677765443 444555544432 1123455566
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHH
Q 012111 161 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT--YNTIIDGYGKAKKFEE 238 (471)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~ 238 (471)
..|+.+.+..+++.-..... ..+..- .+.+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+.
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~~-~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFADD-VFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred HCCCHHHHHHHHHcCCcccc-cccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 78888877666653221000 001111 12333344556653 4455555666554321 1223444556777665
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHH
Q 012111 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT---LNILTKSYGRAGMYDKMRSVMD 315 (471)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~ 315 (471)
+..+++.-.... ..|....+.+. ..+..|+.+-+ +.+.+.|..++... ...++...+..|+.+-+ +
T Consensus 151 v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~ 219 (413)
T PHA02875 151 IELLIDHKACLD--IEDCCGCTPLI-IAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----R 219 (413)
T ss_pred HHHHHhcCCCCC--CCCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----H
Confidence 554443211100 11222222333 34455665543 34445555554322 12344444566665543 4
Q ss_pred HHHhCCCCCCH
Q 012111 316 FMQKRFFFPTV 326 (471)
Q Consensus 316 ~~~~~~~~~~~ 326 (471)
.+.+.|..++.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 44556665553
No 480
>PRK09857 putative transposase; Provisional
Probab=35.19 E-value=3.3e+02 Score=24.30 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012111 295 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359 (471)
Q Consensus 295 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 359 (471)
..++......++.++...+++.+.+.. .......-++..-+.+.|.-+++.++..+|...|+.+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344444445555555555555554431 1122223334444444555455666666666666543
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.02 E-value=3.8e+02 Score=28.03 Aligned_cols=131 Identities=15% Similarity=0.045 Sum_probs=85.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 012111 122 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 201 (471)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 201 (471)
..+..+|+.+.|++.-..+- +..+|..|.......|+.+-|...|++.+. |+.|--.|.-.|+.
T Consensus 651 ~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~ 714 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNL 714 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCH
Confidence 34567888888887765543 778899999999999999999999988775 33444456677888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 202 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (471)
++..++.+.....+ |..+ ......-.|+.++-.++++.. |..| ..|.. ....|.-++|.++.++
T Consensus 715 eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~----g~~~--laylt----a~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 715 EKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENG----GQLP--LAYLT----AAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhc----Cccc--HHHHH----HhhcCcHHHHHHHHHh
Confidence 88777766654332 2221 111122347777766666543 3232 22322 2346888899999988
Q ss_pred HHh
Q 012111 282 FNL 284 (471)
Q Consensus 282 ~~~ 284 (471)
...
T Consensus 779 ~~~ 781 (1202)
T KOG0292|consen 779 LEK 781 (1202)
T ss_pred hcc
Confidence 865
No 482
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.76 E-value=2.9e+02 Score=23.64 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=56.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHH
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-G-----------MKPNSITYCSLV 368 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~li 368 (471)
|.+..+..--.++.+-....++.-+......++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444445555444455544444444443 34567777777766654432 1 135555556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
..|. .+++++|.+++.++-+.|+.| ....+.+.+.+-
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp-~Dii~~~FRv~K 283 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSP-EDIITTLFRVVK 283 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 5544 356777777777777777764 334455555443
No 483
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=4.6e+02 Score=25.87 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHhc
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS-KAGLIMKVDSILRQVENS---DVILDTPFFNCIISAYGQA 409 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 409 (471)
..+.+.|.+..|.++-+.+.+....-|+.....+|..|+ +..+++-.+++++..... ...||-..-.+|...|.+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 344556666666666666665543334555555555543 445566666665554322 2233433333444444443
Q ss_pred C
Q 012111 410 G 410 (471)
Q Consensus 410 g 410 (471)
.
T Consensus 430 ~ 430 (665)
T KOG2422|consen 430 N 430 (665)
T ss_pred C
Confidence 3
No 484
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.54 E-value=6.2e+02 Score=27.83 Aligned_cols=155 Identities=8% Similarity=-0.056 Sum_probs=92.3
Q ss_pred HHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhCCCCCCHHHHHHH
Q 012111 266 YGNSGNIEKMEK------WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-------QKRFFFPTVVTYNIV 332 (471)
Q Consensus 266 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 332 (471)
....|.+.++.+ ++......-.+.....|..+...+.+.|+.++|...-... ......-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 5543222222555677888888899999999888765432 111111233456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCcCHHH
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHR-----G--MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-----D--VILDTPF 398 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 398 (471)
.......++...|...+.+.... | .+|...+++.+-..+...++.+.|.++++.+... | ...+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666777777777766543 2 2333444455544555568888888888877642 1 1225566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 012111 399 FNCIISAYGQAGDVEKMGELFL 420 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~ 420 (471)
+..+.+.+...+++..|....+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 7777777777777777665443
No 485
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=34.31 E-value=3.1e+02 Score=28.35 Aligned_cols=30 Identities=7% Similarity=-0.074 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
..+....+.+-...++++-|.+.-..+...
T Consensus 596 ~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~ 625 (715)
T PF08314_consen 596 RRILSMCIEAALVEDDFETAYSYCLELLDP 625 (715)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555677777778888887776665543
No 486
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=2.6e+02 Score=25.32 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 012111 299 KSYGRAGMYDKMRSVMDFMQKRF-FFP--TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKA 374 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 374 (471)
+-|.+..++..|...|..-.+.. ..| +.+.|+.-..+-...|++..|+.=-...+.. .|+ ...|..=..++...
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhHHHHHH
Confidence 55666777777777776554432 122 3345555555555556666665555444442 333 23333334444444
Q ss_pred CCHHHHHHHHHHH
Q 012111 375 GLIMKVDSILRQV 387 (471)
Q Consensus 375 g~~~~a~~~~~~~ 387 (471)
..+..|....++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 5555555544443
No 487
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.28 E-value=1.6e+02 Score=20.53 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (471)
|...-..+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4445555555555556666665555555444
No 488
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.00 E-value=2.6e+02 Score=25.02 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC--IISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
+..+...|.++.|+..++........|-...|.. +.+.|...|..+.|..++..+.+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777776433222333333333 334566677777777777766553
No 489
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.94 E-value=79 Score=23.42 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444555555555666667766666656666655555555555553
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.89 E-value=4.5e+02 Score=25.50 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012111 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317 (471)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (471)
...+.++.+.+..|+..+......++. ...|+...|+.+++++...+ ....++..+. +++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~-------------~~l--- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIR-------------KMI--- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHH-------------HHh---
Confidence 344445555444445555555544443 34577777777776654321 0011111111 111
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 012111 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 360 (471)
Q Consensus 318 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 360 (471)
|. .+...+..++.+....+....|+.++.++...|..|.
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 22 2444555555555554555667777777777766554
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.64 E-value=3.5e+02 Score=24.22 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 307 YDKMRSVMDFMQKRFF----FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 382 (471)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... ..+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4577788887776422 34555666677777788886665555555554 4467778889999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 383 ILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLT----MKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (471)
+++.+...+..++... ..++.++...+. .+.+.+.+.. +.+. +..+......++..+...-..++-.+-+++
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9999988652324444 334445543333 3666666543 3332 333333445555554443334444455555
Q ss_pred HHHhhh
Q 012111 457 MIAMKE 462 (471)
Q Consensus 457 m~~~~~ 462 (471)
+.+..+
T Consensus 301 f~~~~~ 306 (324)
T PF11838_consen 301 FFEDKP 306 (324)
T ss_dssp HHHHHC
T ss_pred HHhhCc
Confidence 554433
No 492
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.49 E-value=1.3e+02 Score=19.23 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHH
Q 012111 268 NSGNIEKMEKWYNEFN 283 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~ 283 (471)
+.|++-+|-++++++-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 4455555555555543
No 493
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.56 E-value=2.3e+02 Score=21.79 Aligned_cols=69 Identities=4% Similarity=-0.064 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 323 FPTVVTYNIVIETFGKAG---HIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 323 ~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
.++..+--.+.-++.+.. +..+.+.+++++.+.. .| .......|.-++.+.++++.+.++.+.+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 344444444555555544 4556777777777632 22 233444566677788888888888877776543
No 494
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.34 E-value=5.7e+02 Score=26.23 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCcCHHHHHHHHHHHHhc
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD-------------VILDTPFFNCIISAYGQA 409 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 409 (471)
+-...+-..+...|+..+......++... .|+...+..+++++...+ -..+......|+.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 410 GDVEKMGELFLTMKERHCVPDNITFATM 437 (471)
Q Consensus 410 g~~~~a~~~~~~~~~~~~~p~~~~~~~l 437 (471)
++...++.+++++...|+.+....-..+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.17 E-value=92 Score=20.80 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 409 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (471)
.|+.+.+.+++++..+.|..|.......+.-+..
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4666667777777666666666555554544443
No 496
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.96 E-value=3.3e+02 Score=23.34 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 012111 224 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFNL 284 (471)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 284 (471)
..+++.+-+.|+++++.+.++++.+.+ ...+..--+.+-.+|-. .|....+.+++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 456778888999999999999998874 56666666666666632 3444555556655543
No 497
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.90 E-value=3.5e+02 Score=23.61 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERH-CVP-----DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
.|+.-|.+.|+++.|-.++--+...+ ... +...-..++......|+|+-+.++.+=+...++...
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~ 254 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGN 254 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccC
Confidence 46666777777777766655544322 111 223334566777888999999999988888887654
No 498
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.71 E-value=2.1e+02 Score=21.03 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
++++.+.+....++|+++++.|.+.| ..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
No 499
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.60 E-value=5.2e+02 Score=25.54 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=70.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG-QAGDVEKMGELFLTMKER---HCVPDNITFATMIQAYN 442 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~ 442 (471)
-+..+.+.|-+..|.++.+.+...++.-|+...-.+|..|+ ++.+++=.+++++..... ...||...-.+|...|.
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l 427 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFL 427 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHH
Confidence 34556788999999999999999888778888888888775 677888888888877533 23466655556667776
Q ss_pred hcCC---HHHHHHHHHHHHHhhh
Q 012111 443 ALGM---TEAAQNLENKMIAMKE 462 (471)
Q Consensus 443 ~~g~---~~~A~~~~~~m~~~~~ 462 (471)
+... -+.|...+.+++..-|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCc
Confidence 6655 4567777777776655
No 500
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.50 E-value=3.8e+02 Score=25.80 Aligned_cols=212 Identities=9% Similarity=0.023 Sum_probs=90.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHH--HHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHH---HHH
Q 012111 155 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--YSILIKS-----CTKFHRFDLIEKILAEMSYLGIECSAV---TYN 224 (471)
Q Consensus 155 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~ 224 (471)
.+...++.|+.+-+..+++ .|..++... ....+.. ....++. ++.+.+.+.|..++.. ..+
T Consensus 38 ~L~~A~~~~~~~ivk~Ll~-----~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 38 PLYLAKEARNIDVVKILLD-----NGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhccCCHHHHHHHHH-----cCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCc
Confidence 4445566677655555543 355554332 2233343 3444443 3444455566554322 223
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHH--HHH
Q 012111 225 TIIDGYG-KAKKFEEMESSFSAMVESGGCHPDIF--TLNSMISAYGNSG--NIEKMEKWYNEFNLMGVKADIQTL--NIL 297 (471)
Q Consensus 225 ~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~--~~l 297 (471)
.+..+.. ..|+.+-+..++ +.+ ..++.. .-...+...+..| +.+ +.+.+.+.|..++.... ...
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll----~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tp 179 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLL----DNG-ANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTP 179 (480)
T ss_pred hhhHHHhcccChHHHHHHHH----HcC-CCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCH
Confidence 3333332 556655444443 332 333211 1123344445555 443 33344445554433221 233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHH
Q 012111 298 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT--------YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI---TYCS 366 (471)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ 366 (471)
+...+..|+.+-+.- +.+.|..++... +...+...+..|+ ...++.+.+.+.|..++.. -.+.
T Consensus 180 L~~A~~~~~~~iv~~----Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~Tp 253 (480)
T PHA03100 180 LHIAVEKGNIDVIKF----LLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTP 253 (480)
T ss_pred HHHHHHhCCHHHHHH----HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 455556665544443 344555444221 1233333444454 1123444455555554322 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcC
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILD 395 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (471)
+ ...+..|+.+ +++.+.+.|..++
T Consensus 254 L-~~A~~~~~~~----iv~~Ll~~gad~n 277 (480)
T PHA03100 254 L-HYAVYNNNPE----FVKYLLDLGANPN 277 (480)
T ss_pred H-HHHHHcCCHH----HHHHHHHcCCCCC
Confidence 3 3334555544 3444445554443
Done!