Query 012111
Match_columns 471
No_of_seqs 687 out of 2648
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 02:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.7E-35 3E-39 285.8 46.9 400 52-465 95-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-34 5.8E-39 283.7 42.4 376 78-464 84-549 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-29 1.1E-33 232.4 46.2 367 85-464 6-372 (388)
4 4g26_A Pentatricopeptide repea 100.0 3.8E-32 1.3E-36 256.2 24.4 188 257-444 27-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 6.9E-31 2.4E-35 247.7 27.0 203 169-373 10-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-27 8.4E-32 219.8 47.6 381 49-446 7-388 (388)
7 2gw1_A Mitochondrial precursor 100.0 1.7E-24 5.8E-29 208.4 38.2 374 81-465 9-483 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.6E-24 2.3E-28 200.8 40.1 303 78-391 26-359 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-23 3.7E-28 199.3 40.1 354 96-464 10-414 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-22 4.8E-27 196.2 40.2 375 80-465 27-496 (537)
11 2gw1_A Mitochondrial precursor 99.9 5.8E-22 2E-26 190.7 39.5 372 47-433 12-484 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 7.5E-20 2.6E-24 167.2 41.5 327 79-442 4-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 6.9E-20 2.4E-24 167.5 40.4 326 46-407 8-351 (359)
14 3fp2_A TPR repeat-containing p 99.9 3.2E-20 1.1E-24 179.6 38.0 367 47-425 31-491 (537)
15 2xm6_A Protein corresponding t 99.9 5.8E-17 2E-21 154.6 52.3 339 91-462 56-434 (490)
16 3hym_B Cell division cycle pro 99.9 1.7E-19 5.6E-24 163.0 31.8 287 151-447 24-321 (330)
17 3hym_B Cell division cycle pro 99.9 3.8E-19 1.3E-23 160.6 32.1 289 78-411 22-320 (330)
18 1fch_A Peroxisomal targeting s 99.9 7E-20 2.4E-24 168.2 27.5 293 162-460 38-359 (368)
19 2ooe_A Cleavage stimulation fa 99.9 1.1E-16 3.7E-21 154.3 45.1 397 55-463 26-495 (530)
20 4eqf_A PEX5-related protein; a 99.8 1.4E-19 4.7E-24 166.1 22.3 266 184-456 64-352 (365)
21 1fch_A Peroxisomal targeting s 99.8 8.1E-19 2.8E-23 161.1 26.9 305 90-422 37-356 (368)
22 2xm6_A Protein corresponding t 99.8 4.9E-15 1.7E-19 141.3 48.8 332 97-461 26-397 (490)
23 3cv0_A Peroxisome targeting si 99.8 6E-18 2E-22 152.5 27.0 266 189-463 25-318 (327)
24 4eqf_A PEX5-related protein; a 99.8 6.2E-18 2.1E-22 155.1 26.0 265 117-386 68-352 (365)
25 3cv0_A Peroxisome targeting si 99.8 1.9E-17 6.4E-22 149.2 27.6 277 79-386 22-311 (327)
26 4g1t_A Interferon-induced prot 99.8 2.7E-16 9.2E-21 149.5 34.6 364 84-466 57-465 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 9.3E-17 3.2E-21 141.5 28.9 248 160-424 10-263 (291)
28 2ooe_A Cleavage stimulation fa 99.8 1.8E-15 6.2E-20 145.8 40.0 379 75-463 10-457 (530)
29 3mkr_A Coatomer subunit epsilo 99.8 4.6E-17 1.6E-21 143.5 26.3 256 193-465 7-269 (291)
30 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-18 4.9E-23 168.8 13.2 113 257-369 128-244 (1134)
31 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.8E-19 146.4 40.5 330 73-461 980-1310(1630)
32 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-18 3.8E-23 169.6 10.9 119 290-408 126-248 (1134)
33 1b89_A Protein (clathrin heavy 99.8 7.3E-18 2.5E-22 151.8 14.8 318 90-458 15-339 (449)
34 1b89_A Protein (clathrin heavy 99.8 3.3E-17 1.1E-21 147.6 18.3 330 77-456 31-368 (449)
35 3uq3_A Heat shock protein STI1 99.7 3.2E-15 1.1E-19 129.6 26.4 224 223-461 8-237 (258)
36 4g1t_A Interferon-induced prot 99.7 1.2E-14 4.3E-19 137.9 32.5 369 47-434 57-469 (472)
37 2pl2_A Hypothetical conserved 99.7 3.4E-15 1.2E-19 125.7 22.4 114 340-457 98-211 (217)
38 3uq3_A Heat shock protein STI1 99.7 1.1E-14 3.6E-19 126.3 26.3 225 187-425 7-236 (258)
39 1ouv_A Conserved hypothetical 99.7 1.6E-13 5.3E-18 120.1 33.0 225 220-463 6-254 (273)
40 2ho1_A Type 4 fimbrial biogene 99.7 3.5E-14 1.2E-18 122.7 27.0 200 220-424 37-237 (252)
41 1xi4_A Clathrin heavy chain; a 99.7 3E-13 1E-17 136.2 36.8 314 84-452 1055-1376(1630)
42 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.8E-19 122.5 22.9 200 217-423 2-212 (217)
43 3u4t_A TPR repeat-containing p 99.7 1.5E-14 5.3E-19 126.4 24.5 233 226-463 9-253 (272)
44 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-14 4.6E-19 136.2 24.7 224 222-463 178-424 (452)
45 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-13 3.7E-18 119.5 27.7 203 257-463 38-241 (252)
46 2vq2_A PILW, putative fimbrial 99.7 1.4E-13 4.8E-18 116.4 27.4 202 219-424 7-210 (225)
47 2h6f_A Protein farnesyltransfe 99.7 5.2E-14 1.8E-18 128.2 25.3 217 185-409 97-322 (382)
48 2q7f_A YRRB protein; TPR, prot 99.7 2.1E-14 7.1E-19 123.2 21.6 199 220-424 23-221 (243)
49 3u4t_A TPR repeat-containing p 99.7 6.5E-14 2.2E-18 122.4 24.9 197 80-283 5-206 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-14 3.9E-19 127.4 19.7 245 199-454 19-269 (275)
51 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7.2E-18 115.3 26.9 203 257-462 9-213 (225)
52 1ouv_A Conserved hypothetical 99.6 1.4E-12 4.8E-17 114.0 32.6 219 188-425 9-251 (273)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.5E-15 3.3E-19 128.0 18.3 223 90-320 17-244 (275)
54 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.7E-18 124.8 26.6 197 114-317 97-302 (382)
55 2q7f_A YRRB protein; TPR, prot 99.6 5.9E-14 2E-18 120.4 22.0 199 188-392 26-224 (243)
56 3e4b_A ALGK; tetratricopeptide 99.6 4E-13 1.4E-17 126.2 27.6 344 84-463 9-390 (452)
57 2ond_A Cleavage stimulation fa 99.6 3.2E-12 1.1E-16 113.8 31.5 223 237-464 33-274 (308)
58 4e6h_A MRNA 3'-END-processing 99.6 3.2E-11 1.1E-15 117.2 40.4 385 75-465 63-575 (679)
59 4a1s_A PINS, partner of inscut 99.6 8.9E-14 3E-18 129.5 20.7 279 152-463 51-375 (411)
60 3sf4_A G-protein-signaling mod 99.6 4.9E-14 1.7E-18 130.9 18.9 303 112-447 7-363 (406)
61 3sf4_A G-protein-signaling mod 99.6 2.3E-13 7.8E-18 126.3 23.0 281 184-465 8-341 (406)
62 3ro2_A PINS homolog, G-protein 99.6 1.2E-13 4.2E-18 124.5 19.9 139 327-465 184-337 (338)
63 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-12 5.1E-17 106.4 23.9 171 290-464 4-174 (184)
64 3ro2_A PINS homolog, G-protein 99.6 2.2E-13 7.4E-18 122.8 19.2 275 83-390 10-332 (338)
65 3ulq_A Response regulator aspa 99.6 9.5E-13 3.2E-17 121.3 23.5 237 226-465 109-373 (383)
66 4a1s_A PINS, partner of inscut 99.6 4.1E-13 1.4E-17 125.0 21.2 282 112-424 46-371 (411)
67 4abn_A Tetratricopeptide repea 99.5 8E-13 2.7E-17 124.9 21.4 215 91-315 81-316 (474)
68 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.4E-16 109.9 27.9 218 95-320 33-270 (308)
69 3vtx_A MAMA; tetratricopeptide 99.5 5.3E-12 1.8E-16 103.1 23.4 165 256-424 5-169 (184)
70 3ulq_A Response regulator aspa 99.5 4.6E-12 1.6E-16 116.7 24.2 228 194-424 112-367 (383)
71 4abn_A Tetratricopeptide repea 99.5 1.6E-12 5.3E-17 122.9 21.2 212 201-419 84-315 (474)
72 1hz4_A MALT regulatory protein 99.5 6.6E-11 2.3E-15 108.5 30.0 302 152-462 17-351 (373)
73 3nf1_A KLC 1, kinesin light ch 99.5 1.3E-12 4.5E-17 116.4 18.0 244 219-463 26-310 (311)
74 3q15_A PSP28, response regulat 99.5 1.5E-11 5.3E-16 112.9 25.1 234 225-462 106-367 (378)
75 3nf1_A KLC 1, kinesin light ch 99.5 3.7E-13 1.3E-17 120.0 13.7 246 149-424 27-306 (311)
76 3as5_A MAMA; tetratricopeptide 99.5 1.6E-11 5.6E-16 100.1 22.1 171 292-466 9-179 (186)
77 4e6h_A MRNA 3'-END-processing 99.5 7.8E-10 2.7E-14 107.6 36.7 362 95-463 49-536 (679)
78 3q15_A PSP28, response regulat 99.4 8.8E-11 3E-15 107.8 25.0 226 195-424 111-364 (378)
79 1hz4_A MALT regulatory protein 99.4 3E-10 1E-14 104.0 28.5 267 123-389 23-321 (373)
80 4i17_A Hypothetical protein; T 99.4 9.6E-11 3.3E-15 99.2 21.7 203 253-465 4-214 (228)
81 3as5_A MAMA; tetratricopeptide 99.4 1.2E-10 4E-15 94.9 21.5 163 258-424 10-172 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 3.6E-11 1.2E-15 118.3 21.3 167 291-462 9-176 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.3 7.1E-11 2.4E-15 116.2 21.0 164 256-423 9-172 (723)
84 3edt_B KLC 2, kinesin light ch 99.3 3.7E-11 1.3E-15 105.2 14.6 229 231-460 12-281 (283)
85 4i17_A Hypothetical protein; T 99.3 1E-09 3.5E-14 92.8 22.4 193 220-425 7-209 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 9.7E-11 3.3E-15 102.5 15.3 135 113-247 42-196 (283)
87 2fo7_A Synthetic consensus TPR 99.3 8.3E-10 2.8E-14 84.5 18.4 133 328-463 3-135 (136)
88 1qqe_A Vesicular transport pro 99.2 5E-10 1.7E-14 98.7 17.0 197 265-463 46-272 (292)
89 3mv2_B Coatomer subunit epsilo 99.2 7E-09 2.4E-13 89.7 23.5 60 260-319 104-164 (310)
90 3mv2_B Coatomer subunit epsilo 99.2 6.2E-09 2.1E-13 90.0 23.0 243 197-464 25-286 (310)
91 3qky_A Outer membrane assembly 99.2 3.7E-09 1.3E-13 91.5 20.3 188 254-464 13-228 (261)
92 2uy1_A Cleavage stimulation fa 99.2 3.5E-07 1.2E-11 86.3 34.3 347 91-460 27-413 (493)
93 3urz_A Uncharacterized protein 99.1 2.8E-09 9.5E-14 88.6 16.9 96 79-177 5-116 (208)
94 1qqe_A Vesicular transport pro 99.1 2.8E-09 9.6E-14 93.8 17.5 210 200-424 32-268 (292)
95 3dra_A Protein farnesyltransfe 99.1 1.1E-07 3.8E-12 83.0 26.6 227 85-319 39-286 (306)
96 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4E-13 77.9 18.2 128 294-424 4-131 (136)
97 3urz_A Uncharacterized protein 99.1 1.1E-08 3.7E-13 85.0 19.2 136 296-437 59-196 (208)
98 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.3E-08 1.1E-12 83.2 21.8 190 256-465 4-218 (225)
99 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.4E-14 107.7 14.9 171 125-303 402-580 (681)
100 3qky_A Outer membrane assembly 99.1 1.9E-08 6.4E-13 87.0 20.3 210 76-308 13-249 (261)
101 3dra_A Protein farnesyltransfe 99.1 2.1E-07 7E-12 81.3 26.5 219 200-424 48-286 (306)
102 2pzi_A Probable serine/threoni 99.1 5.5E-09 1.9E-13 103.2 17.9 173 267-446 402-583 (681)
103 2vsy_A XCC0866; transferase, g 99.0 9.2E-09 3.2E-13 99.8 18.9 153 269-425 2-157 (568)
104 3rjv_A Putative SEL1 repeat pr 99.0 9.2E-08 3.1E-12 79.6 21.8 162 291-461 18-198 (212)
105 2r5s_A Uncharacterized protein 99.0 6.9E-09 2.4E-13 83.7 14.3 159 297-459 12-172 (176)
106 3qou_A Protein YBBN; thioredox 99.0 1.3E-08 4.6E-13 89.2 16.8 163 291-459 117-283 (287)
107 2uy1_A Cleavage stimulation fa 99.0 2.3E-07 7.9E-12 87.6 26.1 335 90-457 6-380 (493)
108 2r5s_A Uncharacterized protein 99.0 6.8E-09 2.3E-13 83.7 13.5 160 81-246 9-170 (176)
109 3qou_A Protein YBBN; thioredox 99.0 2.7E-08 9.2E-13 87.2 18.0 164 113-281 116-280 (287)
110 4ga2_A E3 SUMO-protein ligase 99.0 9.9E-09 3.4E-13 80.2 13.2 140 90-235 9-149 (150)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 3.7E-08 1.3E-12 87.3 18.6 202 90-318 3-222 (307)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 1.4E-08 4.7E-13 90.1 15.7 224 198-453 4-254 (307)
113 3rjv_A Putative SEL1 repeat pr 99.0 1.2E-07 4E-12 79.0 20.3 28 220-247 18-45 (212)
114 4ga2_A E3 SUMO-protein ligase 99.0 4.4E-09 1.5E-13 82.3 11.0 112 330-445 35-148 (150)
115 2vsy_A XCC0866; transferase, g 99.0 3.4E-08 1.2E-12 95.8 19.0 154 91-250 2-158 (568)
116 3u3w_A Transcriptional activat 98.9 1.5E-06 5.3E-11 76.3 26.9 170 297-466 81-272 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.2E-08 1.8E-12 81.2 16.5 131 293-431 8-154 (213)
118 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.8E-07 1.3E-11 76.7 21.7 207 148-393 3-216 (225)
119 3u3w_A Transcriptional activat 98.9 8.4E-07 2.9E-11 78.0 22.9 161 227-387 82-263 (293)
120 3gyz_A Chaperone protein IPGC; 98.9 6.1E-08 2.1E-12 75.4 13.7 94 329-424 39-132 (151)
121 1a17_A Serine/threonine protei 98.9 3.2E-07 1.1E-11 72.8 18.4 136 327-465 14-151 (166)
122 3q7a_A Farnesyltransferase alp 98.9 4.6E-06 1.6E-10 73.6 26.8 172 92-271 68-257 (349)
123 4gco_A Protein STI-1; structur 98.8 1.2E-07 4E-12 71.4 14.4 94 329-424 16-109 (126)
124 2qfc_A PLCR protein; TPR, HTH, 98.8 7.4E-07 2.5E-11 78.3 21.3 166 297-462 81-268 (293)
125 3q7a_A Farnesyltransferase alp 98.8 1E-05 3.5E-10 71.4 27.0 220 200-425 69-331 (349)
126 3gw4_A Uncharacterized protein 98.8 1.2E-07 4.2E-12 78.1 14.1 139 327-465 27-181 (203)
127 2vgx_A Chaperone SYCD; alterna 98.8 3.9E-08 1.3E-12 76.6 10.2 96 327-424 22-117 (148)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.1E-06 3.8E-11 73.0 19.5 132 257-393 7-153 (213)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 1.7E-06 5.7E-11 76.1 21.2 167 150-316 76-262 (293)
130 3gyz_A Chaperone protein IPGC; 98.7 1.1E-06 3.6E-11 68.3 16.9 102 361-464 36-137 (151)
131 2e2e_A Formate-dependent nitri 98.7 1.4E-07 4.9E-12 75.9 12.5 121 302-425 21-144 (177)
132 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.8E-12 83.0 12.5 98 219-319 3-100 (281)
133 4gco_A Protein STI-1; structur 98.7 5.1E-07 1.7E-11 67.9 14.4 101 362-464 14-114 (126)
134 1a17_A Serine/threonine protei 98.7 1.1E-06 3.9E-11 69.5 17.3 128 293-423 15-144 (166)
135 4f3v_A ESX-1 secretion system 98.7 9E-07 3.1E-11 75.5 17.2 186 232-424 18-236 (282)
136 2c2l_A CHIP, carboxy terminus 98.7 2.1E-07 7.1E-12 81.2 13.7 197 255-463 3-202 (281)
137 3dss_A Geranylgeranyl transfer 98.7 1.9E-05 6.6E-10 69.4 25.7 232 202-463 47-307 (331)
138 1na0_A Designed protein CTPR3; 98.7 1.4E-06 4.9E-11 64.9 16.5 113 327-442 10-122 (125)
139 1p5q_A FKBP52, FK506-binding p 98.7 7.9E-07 2.7E-11 79.7 16.9 130 328-459 149-293 (336)
140 2xcb_A PCRH, regulatory protei 98.7 4.8E-07 1.6E-11 69.8 13.1 95 328-424 20-114 (142)
141 2vyi_A SGTA protein; chaperone 98.7 1.1E-06 3.8E-11 66.2 14.9 118 326-446 12-129 (131)
142 1na0_A Designed protein CTPR3; 98.7 2.5E-06 8.7E-11 63.5 16.6 111 293-406 11-121 (125)
143 3sz7_A HSC70 cochaperone (SGT) 98.6 7.8E-07 2.7E-11 70.5 14.1 99 325-425 10-108 (164)
144 3q49_B STIP1 homology and U bo 98.6 1.8E-06 6E-11 65.9 15.3 96 326-423 9-104 (137)
145 3gw4_A Uncharacterized protein 98.6 1.7E-06 5.7E-11 71.2 16.2 133 292-424 27-175 (203)
146 2e2e_A Formate-dependent nitri 98.6 4.9E-07 1.7E-11 72.7 12.5 123 267-392 21-146 (177)
147 4f3v_A ESX-1 secretion system 98.6 4.8E-06 1.6E-10 71.0 18.9 128 261-391 107-238 (282)
148 2vyi_A SGTA protein; chaperone 98.6 2.5E-06 8.6E-11 64.2 15.5 89 192-283 19-107 (131)
149 2lni_A Stress-induced-phosphop 98.6 1.8E-06 6.3E-11 65.3 14.7 93 329-423 19-111 (133)
150 3upv_A Heat shock protein STI1 98.6 1.4E-06 4.7E-11 65.5 13.8 95 328-424 6-100 (126)
151 2lni_A Stress-induced-phosphop 98.6 2.3E-06 7.8E-11 64.8 15.2 92 188-282 19-110 (133)
152 1p5q_A FKBP52, FK506-binding p 98.6 2.3E-06 7.7E-11 76.7 17.3 96 326-423 196-292 (336)
153 4gcn_A Protein STI-1; structur 98.6 4.6E-07 1.6E-11 68.3 10.8 106 327-435 9-120 (127)
154 2vgx_A Chaperone SYCD; alterna 98.6 5.2E-07 1.8E-11 70.1 10.7 100 362-463 22-121 (148)
155 4b4t_Q 26S proteasome regulato 98.6 4.2E-06 1.4E-10 78.0 18.9 207 78-284 4-244 (434)
156 3dss_A Geranylgeranyl transfer 98.6 0.00011 3.6E-09 64.7 26.1 178 84-269 35-240 (331)
157 3upv_A Heat shock protein STI1 98.5 4E-06 1.4E-10 62.9 15.1 98 362-461 5-102 (126)
158 2kck_A TPR repeat; tetratricop 98.5 6.6E-07 2.3E-11 65.4 10.5 103 361-465 6-111 (112)
159 1hxi_A PEX5, peroxisome target 98.5 8.7E-07 3E-11 66.1 11.1 97 365-464 21-118 (121)
160 1elw_A TPR1-domain of HOP; HOP 98.5 2.2E-06 7.6E-11 63.2 13.1 98 326-425 4-101 (118)
161 4gcn_A Protein STI-1; structur 98.5 4.1E-06 1.4E-10 63.0 14.0 101 362-463 9-115 (127)
162 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-05 3.8E-10 59.2 16.1 97 293-391 6-102 (118)
163 2fbn_A 70 kDa peptidylprolyl i 98.5 5.8E-06 2E-10 67.8 15.0 130 329-461 41-187 (198)
164 3sz7_A HSC70 cochaperone (SGT) 98.4 4E-06 1.4E-10 66.3 13.1 96 80-178 13-108 (164)
165 4b4t_Q 26S proteasome regulato 98.4 2.7E-05 9.4E-10 72.4 20.7 56 227-282 11-81 (434)
166 2xcb_A PCRH, regulatory protei 98.4 6E-06 2E-10 63.5 13.5 99 363-463 20-118 (142)
167 1elr_A TPR2A-domain of HOP; HO 98.4 3.7E-06 1.3E-10 63.3 12.2 111 327-440 5-121 (131)
168 2fbn_A 70 kDa peptidylprolyl i 98.4 9.1E-06 3.1E-10 66.6 15.1 96 327-424 89-185 (198)
169 3q49_B STIP1 homology and U bo 98.4 2.1E-05 7.3E-10 59.8 16.3 102 360-463 8-109 (137)
170 2dba_A Smooth muscle cell asso 98.4 8.9E-06 3.1E-10 62.8 14.0 98 325-425 27-128 (148)
171 3ro3_A PINS homolog, G-protein 98.4 3.2E-06 1.1E-10 66.4 11.3 137 328-464 11-162 (164)
172 2xev_A YBGF; tetratricopeptide 98.4 1E-05 3.5E-10 60.8 13.5 93 331-425 7-105 (129)
173 1elr_A TPR2A-domain of HOP; HO 98.4 5.7E-06 2E-10 62.2 11.7 102 361-463 4-111 (131)
174 2dba_A Smooth muscle cell asso 98.4 2.5E-05 8.5E-10 60.2 15.5 99 290-391 27-129 (148)
175 1hxi_A PEX5, peroxisome target 98.3 7.5E-06 2.6E-10 60.9 11.8 95 329-425 20-114 (121)
176 2hr2_A Hypothetical protein; a 98.3 1.3E-05 4.3E-10 61.7 12.9 103 364-466 14-137 (159)
177 2kck_A TPR repeat; tetratricop 98.3 8.5E-06 2.9E-10 59.3 11.6 93 188-283 9-104 (112)
178 3rkv_A Putative peptidylprolyl 98.3 8.4E-06 2.9E-10 64.3 11.9 103 326-431 11-130 (162)
179 3k9i_A BH0479 protein; putativ 98.3 1.4E-06 4.9E-11 64.5 6.3 88 90-178 2-90 (117)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.6E-05 5.5E-10 74.4 14.8 131 291-423 268-413 (457)
181 2if4_A ATFKBP42; FKBP-like, al 98.3 3.1E-06 1E-10 75.9 9.4 154 291-466 179-334 (338)
182 3k9i_A BH0479 protein; putativ 98.2 3.2E-06 1.1E-10 62.5 7.5 87 338-425 2-90 (117)
183 2xev_A YBGF; tetratricopeptide 98.2 2.9E-05 9.9E-10 58.3 13.0 94 81-177 5-104 (129)
184 1wao_1 Serine/threonine protei 98.2 2.6E-06 9E-11 80.2 8.3 117 301-420 16-134 (477)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 3.1E-05 1.1E-09 72.5 15.3 125 255-382 267-406 (457)
186 3ro3_A PINS homolog, G-protein 98.2 2.3E-05 7.9E-10 61.3 11.9 97 328-424 51-157 (164)
187 3rkv_A Putative peptidylprolyl 98.2 3.4E-05 1.2E-09 60.7 12.8 102 291-393 11-129 (162)
188 1ihg_A Cyclophilin 40; ppiase 98.2 3.6E-05 1.2E-09 69.7 14.2 90 360-452 272-362 (370)
189 1wao_1 Serine/threonine protei 98.1 8E-06 2.7E-10 76.9 9.8 116 89-209 17-134 (477)
190 2kat_A Uncharacterized protein 98.1 3.3E-05 1.1E-09 56.7 9.9 79 344-424 3-81 (115)
191 1ihg_A Cyclophilin 40; ppiase 98.0 8E-05 2.8E-09 67.4 13.9 91 325-417 272-362 (370)
192 1klx_A Cysteine rich protein B 98.0 0.00032 1.1E-08 53.3 15.0 110 341-461 10-127 (138)
193 1dce_A Protein (RAB geranylger 98.0 0.00081 2.8E-08 64.5 20.1 155 307-465 45-226 (567)
194 2hr2_A Hypothetical protein; a 98.0 0.00019 6.5E-09 55.2 12.7 109 329-438 14-149 (159)
195 1dce_A Protein (RAB geranylger 97.9 0.0013 4.3E-08 63.2 20.5 170 272-447 45-242 (567)
196 3n71_A Histone lysine methyltr 97.9 8.9E-05 3E-09 69.4 11.6 126 336-461 319-465 (490)
197 1klx_A Cysteine rich protein B 97.9 0.00096 3.3E-08 50.6 15.3 112 91-215 8-127 (138)
198 2if4_A ATFKBP42; FKBP-like, al 97.8 8.7E-05 3E-09 66.4 10.2 114 149-284 179-292 (338)
199 2kat_A Uncharacterized protein 97.8 9.4E-05 3.2E-09 54.2 8.6 79 96-177 3-81 (115)
200 2l6j_A TPR repeat-containing p 97.8 8.1E-05 2.8E-09 54.0 8.2 87 361-450 4-97 (111)
201 1zu2_A Mitochondrial import re 97.8 6.8E-05 2.3E-09 57.5 7.5 99 89-193 13-132 (158)
202 1zu2_A Mitochondrial import re 97.8 8.6E-05 3E-09 56.9 8.0 98 338-439 14-132 (158)
203 3n71_A Histone lysine methyltr 97.8 0.0003 1E-08 65.9 13.1 125 300-424 318-463 (490)
204 2l6j_A TPR repeat-containing p 97.7 4.2E-05 1.4E-09 55.5 5.5 93 325-419 3-101 (111)
205 3ma5_A Tetratricopeptide repea 97.7 0.00024 8.1E-09 50.5 8.9 64 360-424 6-69 (100)
206 1na3_A Designed protein CTPR2; 97.7 0.00064 2.2E-08 46.9 10.9 79 362-442 10-88 (91)
207 1na3_A Designed protein CTPR2; 97.7 0.0009 3.1E-08 46.1 11.3 81 326-408 9-89 (91)
208 3ma5_A Tetratricopeptide repea 97.6 0.00021 7.3E-09 50.7 6.9 66 111-177 4-69 (100)
209 2kc7_A BFR218_protein; tetratr 97.4 0.00072 2.5E-08 47.7 8.1 87 368-465 7-95 (99)
210 3ly7_A Transcriptional activat 97.2 0.018 6.1E-07 50.9 15.9 74 182-260 274-347 (372)
211 3ly7_A Transcriptional activat 97.2 0.01 3.5E-07 52.5 14.3 68 395-464 276-343 (372)
212 1pc2_A Mitochondria fission pr 97.1 0.0052 1.8E-07 46.6 10.1 82 342-424 14-99 (152)
213 3mkq_A Coatomer beta'-subunit; 97.0 0.033 1.1E-06 56.2 18.0 130 260-422 633-762 (814)
214 2kc7_A BFR218_protein; tetratr 96.9 0.0047 1.6E-07 43.3 8.4 64 402-466 6-70 (99)
215 3qww_A SET and MYND domain-con 96.9 0.0034 1.2E-07 57.7 9.0 62 398-459 342-410 (433)
216 3mkq_A Coatomer beta'-subunit; 96.9 0.058 2E-06 54.4 18.9 154 86-281 607-761 (814)
217 3qwp_A SET and MYND domain-con 96.9 0.0048 1.7E-07 56.8 9.8 98 80-177 289-399 (429)
218 3qwp_A SET and MYND domain-con 96.9 0.0085 2.9E-07 55.1 11.4 92 333-424 294-399 (429)
219 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0099 3.4E-07 42.3 9.4 71 359-431 3-79 (104)
220 3qww_A SET and MYND domain-con 96.8 0.0049 1.7E-07 56.7 9.3 86 339-424 311-410 (433)
221 3bee_A Putative YFRE protein; 96.7 0.019 6.4E-07 39.8 9.6 66 359-425 4-72 (93)
222 4h7y_A Dual specificity protei 96.6 0.018 6.1E-07 43.0 9.2 53 410-463 74-126 (161)
223 3mkq_B Coatomer subunit alpha; 96.6 0.18 6.1E-06 39.2 16.7 104 121-246 12-115 (177)
224 3bee_A Putative YFRE protein; 96.5 0.048 1.6E-06 37.6 10.8 66 111-177 3-71 (93)
225 1pc2_A Mitochondria fission pr 96.5 0.031 1.1E-06 42.3 10.3 81 309-391 16-101 (152)
226 4ady_A RPN2, 26S proteasome re 96.3 0.57 1.9E-05 47.0 20.5 87 230-319 500-588 (963)
227 3mkq_B Coatomer subunit alpha; 96.3 0.2 6.9E-06 39.0 13.9 101 301-422 15-115 (177)
228 1wy6_A Hypothetical protein ST 96.0 0.28 9.5E-06 35.9 14.8 139 303-463 19-157 (172)
229 2v5f_A Prolyl 4-hydroxylase su 96.0 0.1 3.5E-06 36.8 10.3 69 325-393 4-78 (104)
230 4h7y_A Dual specificity protei 95.9 0.22 7.4E-06 37.3 11.6 53 340-393 74-126 (161)
231 1nzn_A CGI-135 protein, fissio 95.9 0.078 2.7E-06 38.6 9.2 86 338-424 13-102 (126)
232 1wy6_A Hypothetical protein ST 95.7 0.39 1.3E-05 35.1 15.2 63 329-392 94-156 (172)
233 3u64_A Protein TP_0956; tetrat 95.5 0.068 2.3E-06 45.3 8.7 106 342-457 179-295 (301)
234 3u64_A Protein TP_0956; tetrat 95.4 0.22 7.7E-06 42.2 11.7 107 307-423 179-296 (301)
235 1nzn_A CGI-135 protein, fissio 95.4 0.27 9.2E-06 35.7 10.4 90 86-177 9-102 (126)
236 4ady_A RPN2, 26S proteasome re 94.8 3.8 0.00013 41.2 21.0 303 117-435 342-665 (963)
237 1v54_E Cytochrome C oxidase po 94.2 0.53 1.8E-05 32.3 8.7 63 376-439 25-87 (109)
238 2ff4_A Probable regulatory pro 94.1 0.9 3.1E-05 41.0 13.1 75 364-439 174-253 (388)
239 3o48_A Mitochondria fission 1 94.0 0.65 2.2E-05 33.9 9.5 71 358-430 37-110 (134)
240 4b4t_P 26S proteasome regulato 93.9 3.9 0.00013 37.6 19.3 51 163-213 30-84 (445)
241 4fhn_B Nucleoporin NUP120; pro 93.8 3.4 0.00012 43.4 18.6 131 329-461 902-1051(1139)
242 1y8m_A FIS1; mitochondria, unk 93.6 1.6 5.6E-05 32.3 11.6 71 358-430 36-109 (144)
243 4gns_B Protein CSD3, chitin bi 93.6 0.51 1.8E-05 46.3 11.1 53 403-457 344-397 (754)
244 2ff4_A Probable regulatory pro 93.1 0.43 1.5E-05 43.2 9.2 72 117-189 174-249 (388)
245 3ffl_A Anaphase-promoting comp 93.0 1.9 6.4E-05 33.0 11.0 64 78-141 20-90 (167)
246 1qsa_A Protein (soluble lytic 92.9 7 0.00024 37.6 28.4 80 114-200 72-151 (618)
247 2y69_E Cytochrome C oxidase su 92.6 1.3 4.6E-05 32.2 9.1 63 376-439 68-130 (152)
248 1v54_E Cytochrome C oxidase po 92.4 1.7 5.9E-05 29.8 8.9 63 129-193 25-87 (109)
249 4fhn_B Nucleoporin NUP120; pro 92.3 4.8 0.00016 42.3 17.0 87 221-309 900-989 (1139)
250 4gns_B Protein CSD3, chitin bi 92.1 1.6 5.4E-05 43.0 12.2 130 116-246 250-397 (754)
251 4b4t_P 26S proteasome regulato 90.9 9.6 0.00033 35.0 21.1 33 76-108 54-86 (445)
252 3o48_A Mitochondria fission 1 90.8 3.1 0.00011 30.4 9.6 69 324-392 38-109 (134)
253 2y69_E Cytochrome C oxidase su 89.7 3.6 0.00012 30.0 8.9 63 129-193 68-130 (152)
254 3lvg_A Clathrin heavy chain 1; 89.6 0.00013 4.4E-09 65.9 -17.0 91 77-177 82-172 (624)
255 1zbp_A Hypothetical protein VP 88.9 1.9 6.6E-05 36.0 8.2 117 85-214 4-129 (273)
256 3lvg_A Clathrin heavy chain 1; 86.6 2.1E-05 7.2E-10 70.8 -23.8 78 255-338 198-275 (624)
257 3ffl_A Anaphase-promoting comp 86.0 7.3 0.00025 29.8 9.3 25 222-246 124-148 (167)
258 1y8m_A FIS1; mitochondria, unk 85.9 8.9 0.0003 28.4 12.0 71 323-393 36-109 (144)
259 3lpz_A GET4 (YOR164C homolog); 84.8 19 0.00065 31.3 22.2 83 359-460 134-216 (336)
260 1zbp_A Hypothetical protein VP 84.1 5.2 0.00018 33.4 8.3 120 334-464 5-133 (273)
261 2wpv_A GET4, UPF0363 protein Y 79.9 29 0.00098 29.9 22.5 80 219-318 133-215 (312)
262 2uwj_G Type III export protein 79.8 12 0.00042 25.6 8.2 78 200-286 21-98 (115)
263 2p58_C Putative type III secre 79.3 13 0.00044 25.5 9.1 78 200-286 22-99 (116)
264 4b4t_R RPN7, 26S proteasome re 78.9 12 0.00043 34.1 10.0 63 115-177 132-196 (429)
265 4b4t_R RPN7, 26S proteasome re 78.4 20 0.00067 32.8 11.1 98 187-284 133-236 (429)
266 2uwj_G Type III export protein 77.2 15 0.00051 25.2 8.2 50 159-215 49-98 (115)
267 2p58_C Putative type III secre 76.6 16 0.00053 25.1 9.0 50 159-215 50-99 (116)
268 3eiq_C Programmed cell death p 75.8 36 0.0012 29.9 11.4 212 222-444 56-301 (358)
269 2d2s_A Exocyst complex compone 74.1 19 0.00067 29.5 8.8 95 80-177 20-119 (235)
270 2wpv_A GET4, UPF0363 protein Y 72.4 47 0.0016 28.6 22.0 25 360-384 133-157 (312)
271 2zu6_B Programmed cell death p 70.1 52 0.0018 28.2 11.6 78 364-442 169-248 (307)
272 1qsa_A Protein (soluble lytic 69.5 82 0.0028 30.3 34.2 271 62-353 56-346 (618)
273 3esl_A Checkpoint serine/threo 68.7 42 0.0014 26.6 9.9 54 306-359 94-148 (202)
274 3txn_A 26S proteasome regulato 68.6 66 0.0023 28.8 25.8 168 149-317 19-207 (394)
275 3esl_A Checkpoint serine/threo 66.3 47 0.0016 26.3 10.4 53 342-394 95-148 (202)
276 3lpz_A GET4 (YOR164C homolog); 65.6 68 0.0023 27.9 23.2 80 219-318 135-214 (336)
277 2ion_A PDCD4, programmed cell 62.3 41 0.0014 25.3 7.8 106 328-446 11-119 (152)
278 3ltm_A Alpha-REP4; protein eng 59.7 62 0.0021 25.5 19.4 17 290-306 125-141 (211)
279 2d2s_A Exocyst complex compone 59.2 73 0.0025 26.1 9.7 90 297-389 24-119 (235)
280 2qx5_A Nucleoporin NIC96; mRNA 57.6 1.4E+02 0.0048 28.9 21.4 45 79-125 153-197 (661)
281 2nsz_A Programmed cell death p 57.3 52 0.0018 23.8 9.4 65 328-393 9-75 (129)
282 4a1g_A Mitotic checkpoint seri 56.2 38 0.0013 25.5 6.5 53 132-185 83-136 (152)
283 2wvi_A Mitotic checkpoint seri 52.6 46 0.0016 25.4 6.6 53 132-185 78-131 (164)
284 2fe3_A Peroxide operon regulat 52.5 62 0.0021 23.9 7.4 38 338-375 33-70 (145)
285 2xig_A Ferric uptake regulatio 51.0 67 0.0023 24.0 7.4 41 405-445 35-75 (150)
286 2ion_A PDCD4, programmed cell 49.1 67 0.0023 24.1 7.1 65 80-146 11-77 (152)
287 1mzb_A Ferric uptake regulatio 47.1 68 0.0023 23.4 6.8 60 317-377 9-69 (136)
288 2fe3_A Peroxide operon regulat 47.0 70 0.0024 23.7 6.9 56 352-408 13-68 (145)
289 4gq2_M Nucleoporin NUP120; bet 47.0 1.9E+02 0.0066 29.5 12.2 138 77-234 809-950 (950)
290 3eyy_A Putative iron uptake re 45.2 59 0.002 24.1 6.2 34 342-375 33-66 (145)
291 2ijq_A Hypothetical protein; s 44.5 1E+02 0.0035 23.4 8.4 52 373-424 44-103 (161)
292 4fke_A Aminopeptidase N; zinc 44.3 2.7E+02 0.0093 28.3 16.0 159 295-459 690-859 (909)
293 3jxi_A Vanilloid receptor-rela 43.6 8.2 0.00028 32.1 1.4 27 438-464 229-255 (260)
294 2nsz_A Programmed cell death p 43.5 91 0.0031 22.5 9.7 66 293-359 9-76 (129)
295 2w57_A Ferric uptake regulatio 43.3 69 0.0024 23.9 6.4 61 316-377 7-68 (150)
296 1oai_A Nuclear RNA export fact 43.3 18 0.00061 22.0 2.5 25 91-115 33-57 (59)
297 4a1g_A Mitotic checkpoint seri 43.2 1E+02 0.0035 23.1 9.7 50 275-324 84-134 (152)
298 2xig_A Ferric uptake regulatio 41.6 1.1E+02 0.0036 22.8 7.6 61 316-377 17-77 (150)
299 3eyy_A Putative iron uptake re 41.6 60 0.002 24.1 5.8 32 377-408 33-64 (145)
300 1mzb_A Ferric uptake regulatio 40.6 73 0.0025 23.2 6.1 60 351-411 8-68 (136)
301 1wdy_A 2-5A-dependent ribonucl 39.9 38 0.0013 28.1 5.2 10 347-356 200-209 (285)
302 4ets_A Ferric uptake regulatio 39.7 87 0.003 23.7 6.5 42 264-305 40-83 (162)
303 2r9g_A AAA ATPase, central reg 38.8 1.4E+02 0.0049 23.5 9.5 37 338-375 26-62 (204)
304 4ets_A Ferric uptake regulatio 38.8 83 0.0028 23.9 6.3 69 95-164 14-84 (162)
305 4aez_C MAD3, mitotic spindle c 38.2 70 0.0024 25.8 5.9 54 131-185 131-185 (223)
306 2b7e_A PRE-mRNA processing pro 37.8 25 0.00087 21.3 2.5 29 237-266 3-31 (59)
307 1bpo_A Protein (clathrin); cla 37.5 2.4E+02 0.0084 25.8 10.1 71 214-286 355-425 (494)
308 2ijq_A Hypothetical protein; s 37.4 1.3E+02 0.0046 22.7 8.6 55 406-460 42-104 (161)
309 4gq2_M Nucleoporin NUP120; bet 37.2 3.2E+02 0.011 27.9 12.1 49 221-270 898-950 (950)
310 2w57_A Ferric uptake regulatio 37.2 76 0.0026 23.7 5.8 59 351-410 7-66 (150)
311 1k1a_A B-cell lymphoma 3-encod 37.1 79 0.0027 25.3 6.6 181 262-455 12-204 (241)
312 3txn_A 26S proteasome regulato 36.5 2.3E+02 0.008 25.3 26.8 301 114-426 19-344 (394)
313 2fu4_A Ferric uptake regulatio 36.3 85 0.0029 20.2 6.2 62 349-411 5-67 (83)
314 3bge_A Predicted ATPase; struc 35.9 1.6E+02 0.0055 23.2 8.0 93 367-459 10-110 (201)
315 3lxu_X Tripeptidyl-peptidase 2 35.7 3.1E+02 0.011 29.2 11.4 85 377-464 1265-1349(1354)
316 3ltm_A Alpha-REP4; protein eng 35.6 1.6E+02 0.0054 23.0 20.1 80 218-306 93-172 (211)
317 4aez_C MAD3, mitotic spindle c 33.6 1.9E+02 0.0064 23.4 8.7 83 345-430 96-184 (223)
318 1bpo_A Protein (clathrin); cla 33.4 2.9E+02 0.0098 25.4 13.5 29 111-139 358-386 (494)
319 3eiq_C Programmed cell death p 32.8 2.6E+02 0.0087 24.6 16.6 25 117-141 57-81 (358)
320 1ug3_A EIF4GI, eukaryotic prot 32.5 69 0.0024 28.0 5.6 24 223-246 14-37 (339)
321 3pvs_A Replication-associated 31.9 3E+02 0.01 25.1 12.8 54 303-356 267-325 (447)
322 3ctd_A Putative ATPase, AAA fa 31.6 2E+02 0.0067 23.0 8.9 45 331-375 37-84 (213)
323 3hra_A Ankyrin repeat family p 31.0 44 0.0015 26.0 3.8 38 416-453 158-197 (201)
324 2wvi_A Mitotic checkpoint seri 30.7 1.8E+02 0.0061 22.1 10.2 50 275-324 79-129 (164)
325 3kea_A K1L; tropism, ANK repea 30.1 1.1E+02 0.0038 25.6 6.4 14 195-208 38-51 (285)
326 3ltj_A Alpharep-4; protein eng 29.6 1.9E+02 0.0066 22.2 21.2 187 166-377 13-199 (201)
327 3t5v_B Nuclear mRNA export pro 29.5 1.3E+02 0.0043 27.7 6.8 61 400-460 180-249 (455)
328 4b4t_S RPN3, 26S proteasome re 29.3 3.6E+02 0.012 25.2 11.1 65 185-249 231-299 (523)
329 2zu6_B Programmed cell death p 29.2 2.7E+02 0.0093 23.8 10.6 60 151-213 5-66 (307)
330 1ug3_A EIF4GI, eukaryotic prot 28.9 95 0.0032 27.1 5.8 64 294-358 14-78 (339)
331 2o03_A Probable zinc uptake re 28.6 81 0.0028 22.8 4.6 46 332-377 16-61 (131)
332 2o03_A Probable zinc uptake re 28.1 83 0.0028 22.7 4.6 44 367-410 16-59 (131)
333 1wdy_A 2-5A-dependent ribonucl 27.8 45 0.0015 27.7 3.5 238 190-454 7-273 (285)
334 3pvs_A Replication-associated 27.0 3.6E+02 0.012 24.5 13.3 142 235-392 166-326 (447)
335 2crb_A Nuclear receptor bindin 26.6 1.5E+02 0.0051 19.9 4.9 26 398-423 17-42 (97)
336 3mwm_A ZUR, putative metal upt 26.3 74 0.0025 23.3 4.0 44 367-410 19-62 (139)
337 3mwm_A ZUR, putative metal upt 25.9 76 0.0026 23.3 4.0 47 331-377 18-64 (139)
338 2f6m_A Suppressor protein STP2 24.7 1.3E+02 0.0045 18.7 4.8 44 329-373 5-48 (65)
339 3hra_A Ankyrin repeat family p 24.1 60 0.0021 25.1 3.5 14 160-173 13-26 (201)
340 4b4t_S RPN3, 26S proteasome re 24.0 1.6E+02 0.0056 27.4 6.5 65 361-425 231-299 (523)
341 1k1a_A B-cell lymphoma 3-encod 23.5 1.1E+02 0.0037 24.4 5.1 185 226-430 12-210 (241)
342 3ygs_P Procaspase 9; apoptosis 22.7 1.7E+02 0.006 19.7 5.1 13 130-142 53-65 (97)
343 2lic_A Vitellogenin; lipid tra 22.6 73 0.0025 15.8 2.1 6 5-10 19-24 (35)
344 2yru_A Steroid receptor RNA ac 22.2 1.7E+02 0.0058 20.8 5.0 43 383-425 48-90 (118)
345 2qx5_A Nucleoporin NIC96; mRNA 22.2 5.4E+02 0.019 24.9 16.7 44 151-197 155-198 (661)
346 2rfa_A Transient receptor pote 22.2 2.1E+02 0.0073 22.5 6.6 53 404-457 159-220 (232)
347 3bqo_A Telomeric repeat-bindin 22.1 1.6E+02 0.0055 23.2 5.1 23 120-142 123-145 (211)
348 3bqo_A Telomeric repeat-bindin 21.4 82 0.0028 24.8 3.4 23 439-461 125-147 (211)
349 2r9g_A AAA ATPase, central reg 21.3 3.1E+02 0.01 21.7 10.2 37 268-305 26-62 (204)
350 2keb_A DNA polymerase subunit 20.7 2.1E+02 0.0071 19.5 7.4 32 203-234 27-58 (101)
351 2rg8_A Programmed cell death p 20.7 2.4E+02 0.0083 21.4 6.0 24 295-318 14-37 (165)
352 2dod_A Transcription elongatio 20.4 1E+02 0.0034 20.2 3.2 34 235-269 15-48 (82)
353 3e3v_A Regulatory protein RECX 20.3 3E+02 0.01 21.1 9.9 12 135-146 88-99 (177)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-35 Score=285.75 Aligned_cols=400 Identities=11% Similarity=-0.029 Sum_probs=309.1
Q ss_pred HHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHH
Q 012111 52 SKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPE 131 (471)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (471)
.+.++...+...+..++...+ .+..+..+...+.+.|++++|+++|+.+... +++..+++.++.+|.+.|+++
T Consensus 95 ~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDITG----NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHccCchHHHHHHHHHHhhCC----CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHH
Confidence 344456667777776664333 3356677888888999999999999988653 678888999999999999999
Q ss_pred HHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC---------------
Q 012111 132 QASLLFEVMLSD---------------GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--------------- 181 (471)
Q Consensus 132 ~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------- 181 (471)
+|.++|+++... |.+.+..+|+.++.+|.+.|++++|+++|+++.+....
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhccc
Confidence 999999853221 22335788999999999999999999988888652210
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 182 ------------------------------------------------------KPDVYTYSILIKSCTKFHRFDLIEKI 207 (471)
Q Consensus 182 ------------------------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~ 207 (471)
+++..+++.++..+.+.|++++|.++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 14556666666677777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287 (471)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 287 (471)
|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..++..++..|.+.|++++|.++|+++.+..
T Consensus 328 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 328 TTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp HHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 77776554 3355666677777777777777777777776542 5567788888888889999999999998887653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012111 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367 (471)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 367 (471)
+.+..+|+.++.+|.+.|++++|..+|+.+.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..+
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 481 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNEL 481 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 55677888889999999999999999988887643 367788888888999999999999999888764 4478888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 368 VSAYSKAGLIMKVDSILRQVENS----DVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
+..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 99999999999999999888765 55666 6788899999999999999999999888753 34788888888999
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 442 NALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
.+.|++++|.+.++++++..|+..
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999988887653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-34 Score=283.67 Aligned_cols=376 Identities=12% Similarity=0.006 Sum_probs=310.3
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (471)
...+...+..+.+.|++++|+++|+.+... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 345678888999999999999999999864 568889999999999999999999999998654 678999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------
Q 012111 158 AYGQSGLLDEAFSTINDMKSVS--------------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI------- 216 (471)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------- 216 (471)
+|.+.|++++|.++|+++.... +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 9999999999999999644322 2345688999999999999999999999999876541
Q ss_pred ---------------------------------------------------------------CCCHHHHHHHHHHHHcc
Q 012111 217 ---------------------------------------------------------------ECSAVTYNTIIDGYGKA 233 (471)
Q Consensus 217 ---------------------------------------------------------------~~~~~~~~~l~~~~~~~ 233 (471)
+++..+++.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 14566666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 012111 234 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 313 (471)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 313 (471)
|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+
T Consensus 319 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 77777777777776653 3355567777777777777777777777776543 56788888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 314 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
|+.+.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+.
T Consensus 396 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 396 FSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 998877533 367788999999999999999999999988764 447788899999999999999999999998877655
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 394 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++++.+|..
T Consensus 474 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 7888999999999999999999999988765 66777 7889999999999999999999999999887653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.3e-29 Score=232.43 Aligned_cols=367 Identities=10% Similarity=0.089 Sum_probs=317.9
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 164 (471)
...+.+.|++++|++.|+.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++...|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 445678999999999999998875 6667788888889999999999999999888764 4478899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (471)
+++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998732 4456679999999999999999999999998774 4456777888899999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 012111 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 324 (471)
++.+.. +.+..+|..+...+...|++++|...|+++...+ +.+...+..+...+...|++++|...+.+..+....
T Consensus 160 ~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 160 KAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 998863 5567889999999999999999999999998765 566788999999999999999999999988876432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (471)
+..++..+...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|...++++.+..+. +..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHH
Confidence 57788899999999999999999999999864 335788999999999999999999999999987654 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
.+...|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++++..|..
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999875 34467889999999999999999999999999887754
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.8e-32 Score=256.22 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM---------YDKMRSVMDFMQKRFFFPTVV 327 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 327 (471)
..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666667777777777777777777777777777777777777665543 567788888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 444 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 444 (471)
+.|++++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888887777653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.9e-31 Score=247.65 Aligned_cols=203 Identities=12% Similarity=0.103 Sum_probs=115.9
Q ss_pred HHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------HHH
Q 012111 169 FSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK---------FEE 238 (471)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---------~~~ 238 (471)
..+.+++.+ .+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. ++.
T Consensus 10 e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 10 ENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334444444 3333332 34666677777777777777777777777777777777777777765543 455
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012111 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 318 (471)
|.++|++|.+.+ +.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 89 A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666654443 5566666666666666666666666666666555556666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012111 319 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373 (471)
Q Consensus 319 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 373 (471)
+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5566666666666666666666666666666666655555666666555555544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.5e-27 Score=219.78 Aligned_cols=381 Identities=10% Similarity=-0.004 Sum_probs=325.6
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC
Q 012111 49 KDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK 128 (471)
Q Consensus 49 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (471)
..+.+.++..++.+.+...+...| ..+..+......+...|++++|...++.+.+.. |.+..+|..+...+.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 445667777788777777666443 334455555666778999999999999999875 778899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 208 (471)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 208 (471)
++++|...|+++.+... .+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999988643 367789999999999999999999999998732 334556778888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 209 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 288 (471)
Q Consensus 209 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (471)
+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..... +
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 9998874 4468899999999999999999999999998874 5567889999999999999999999999998764 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012111 289 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 368 (471)
Q Consensus 289 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 368 (471)
.+..++..+...+...|++++|...|+.+.+.... +..+|..+...+.+.|++++|...++++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 56889999999999999999999999999987433 57789999999999999999999999999874 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 012111 369 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGM 446 (471)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 446 (471)
..+...|++++|...++++.+..+. +..++..+..++.+.|++++|.+.|+++.+. .| +...|..+...+...|+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999987654 7889999999999999999999999999974 45 56777777777766653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-24 Score=208.43 Aligned_cols=374 Identities=9% Similarity=-0.028 Sum_probs=301.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 81 VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYG 160 (471)
Q Consensus 81 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (471)
+...-..+.+.|++++|++.|+.+.+.. |+..++..+..++.+.|++++|...++.+.+.+. .+..+|..+..++.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 4444566677888888888888888753 5778888888888888888888888888877653 36678888888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCC-----------------------------------------------------------
Q 012111 161 QSGLLDEAFSTINDMKSVSDC----------------------------------------------------------- 181 (471)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~----------------------------------------------------------- 181 (471)
..|++++|+..|+++....+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 888888888888877653210
Q ss_pred ------------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHH
Q 012111 182 ------------------KPDVYTYSILIKSCTK---FHRFDLIEKILAEMSY-----LGI--------ECSAVTYNTII 227 (471)
Q Consensus 182 ------------------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~l~ 227 (471)
+.+...+......+.. .|+++.|..+++++.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 0012333333333343 7999999999999987 311 22356788889
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 012111 228 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 307 (471)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (471)
..+...|++++|...|+++.+.. |+...+..+..++...|++++|...++++.... +.+...+..+...+...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999998864 338889999999999999999999999998764 55778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 308 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 387 (471)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 387 (471)
++|...++.+.+.... +...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887543 56788889999999999999999999998863 336778999999999999999999999998
Q ss_pred HhCCCCc-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 388 ENSDVIL-D----TPFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 388 ~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
.+..+.. + ...+..+..++.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7653321 1 3488899999999 999999999999998752 34678888999999999999999999999999
Q ss_pred hhhcCC
Q 012111 460 MKENSG 465 (471)
Q Consensus 460 ~~~~~~ 465 (471)
..|..+
T Consensus 478 ~~~~~~ 483 (514)
T 2gw1_A 478 LARTME 483 (514)
T ss_dssp HCSSHH
T ss_pred hccccH
Confidence 887643
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=6.6e-24 Score=200.79 Aligned_cols=303 Identities=12% Similarity=0.017 Sum_probs=170.2
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (471)
...+......+.+.|++++|+++|+.+.+.. +.+..++..+..++...|++++|...|+.+.+.+.. +..++..+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 3445555666667777777777777776653 455666777777777777777777777777665432 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012111 158 AYGQSGLLDEAFSTINDMKSVSDCKPDV---YTYSILIKS------------CTKFHRFDLIEKILAEMSYLGIECSAVT 222 (471)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 222 (471)
+|...|++++|.+.|+++.... +.+. ..+..+... +...|++++|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 7777777777777777776521 2223 445544333 555566666666666665543 335555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL----- 297 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 297 (471)
+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 6666666666666666666666655542 3345556666666666666666666666655432 2233333333
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012111 298 -------TKSYGRAGMYDKMRSVMDFMQKRFFFPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366 (471)
Q Consensus 298 -------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 366 (471)
...+...|++++|...|+.+.+.... + ...|..+...+.+.|++++|...++++.... +.+..++..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 44455555555555555555443211 1 2244444555555555555555555554431 223455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
+..+|...|++++|...++++.+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5555555555555555555555443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.1e-23 Score=199.35 Aligned_cols=354 Identities=10% Similarity=-0.008 Sum_probs=281.2
Q ss_pred HHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012111 96 LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175 (471)
Q Consensus 96 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 175 (471)
.+...+..+.... +.+...+..++..+.+.|++++|..+|+.+.+.. +.+..+|..+..++...|++++|+..|+++
T Consensus 10 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555543 6678889999999999999999999999998764 347889999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCCHHHHH
Q 012111 176 KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA---VTYNTI------------IDGYGKAKKFEEME 240 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 240 (471)
.+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|.
T Consensus 87 l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 87 IQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8732 4567889999999999999999999999999764 2234 555555 44488899999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 241 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
..|+++.+.. +.+...+..+..+|...|++++|..+|+++.... +.+..++..+..+|...|++++|...|+.+.+.
T Consensus 164 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 164 AFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998864 5678889999999999999999999999997754 567889999999999999999999999999876
Q ss_pred CCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 012111 321 FFFPTVVTYNIV------------IETFGKAGHIEKMEEYFKKMKHRGMKPN-----SITYCSLVSAYSKAGLIMKVDSI 383 (471)
Q Consensus 321 ~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~ 383 (471)
... +...+..+ ...+...|++++|..+|+++... .|+ ...+..+...+.+.|++++|...
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 332 44445444 78899999999999999999885 444 44788899999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH------------HHHhcC-----
Q 012111 384 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQ------------AYNALG----- 445 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~------------~~~~~g----- 445 (471)
++.+.+..+. +..+|..+..+|...|++++|...|+++.+. .| +...+..+.. .|...|
T Consensus 318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 9999877544 7889999999999999999999999999884 45 4555555552 344445
Q ss_pred CHHHHHHHHHH-HHHhhhcC
Q 012111 446 MTEAAQNLENK-MIAMKENS 464 (471)
Q Consensus 446 ~~~~A~~~~~~-m~~~~~~~ 464 (471)
+.+++.+.+++ .++..|+.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGG
T ss_pred CHHHHHHHHHHHHHHhCCCC
Confidence 56777888876 56666553
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.4e-22 Score=196.21 Aligned_cols=375 Identities=9% Similarity=-0.018 Sum_probs=278.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+...-..+.+.|++++|++.|+.+.+.. |.+..++..+..++.+.|++++|.+.|+.+.+.+.. +..++..+..++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 33444555566777777777777776654 556666777777777777777777777777665432 566677777777
Q ss_pred HhcCCHHHHHHHHHHhhcCC-----------------------------------CCCCCHH------------------
Q 012111 160 GQSGLLDEAFSTINDMKSVS-----------------------------------DCKPDVY------------------ 186 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~-----------------------------------~~~~~~~------------------ 186 (471)
...|++++|+..|+.+.... ...|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 77777777777665332100 0011111
Q ss_pred ------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHH
Q 012111 187 ------------TYSILIKSCTK--------FHRFDLIEKILAEMSYLGIECSA-------VTYNTIIDGYGKAKKFEEM 239 (471)
Q Consensus 187 ------------~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a 239 (471)
....+...+.. .++++.|..+++.+.+.. +.+. .++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11111111111 247889999999998764 2232 3566777888899999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012111 240 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (471)
...|+.+.+. .|+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+.+
T Consensus 263 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 263 QVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999886 4558889999999999999999999999998765 56788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----c
Q 012111 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----L 394 (471)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~ 394 (471)
.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+..+. .
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 6443 56788899999999999999999999999874 446778999999999999999999999998754321 1
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 395 DTPFFNCIISAYGQA----------GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
....+..+..++... |++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++++..|..
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 222344556677777 9999999999999875 23467888899999999999999999999999988765
Q ss_pred C
Q 012111 465 G 465 (471)
Q Consensus 465 ~ 465 (471)
+
T Consensus 496 ~ 496 (537)
T 3fp2_A 496 D 496 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.8e-22 Score=190.73 Aligned_cols=372 Identities=9% Similarity=-0.057 Sum_probs=307.4
Q ss_pred hhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhc
Q 012111 47 AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126 (471)
Q Consensus 47 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (471)
....+...+++..+...+.+.+...| .+..+......+.+.|++++|++.|+.+.+.. |.+..++..+..++..
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 44556677788888888888877553 46677788888999999999999999999875 6777899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCC-----------------------------------------------------------
Q 012111 127 CKQPEQASLLFEVMLSDGLKP----------------------------------------------------------- 147 (471)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~----------------------------------------------------------- 147 (471)
.|++++|...|+.+...+...
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999987764310
Q ss_pred -------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhc-----CCCC-------CCCHHHHHHHHH
Q 012111 148 -------------------SVDVYTALVSAYGQ---SGLLDEAFSTINDMKS-----VSDC-------KPDVYTYSILIK 193 (471)
Q Consensus 148 -------------------~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~ll~ 193 (471)
+...+......+.. .|++++|+..|+++.. .... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 13333444444444 8999999999999876 2111 223567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 194 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 273 (471)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 273 (471)
.+...|+++.|..+++.+.+.. |+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999998875 338889999999999999999999999998764 456678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 274 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (471)
+|...++++.... +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998765 556778899999999999999999999999876433 56788899999999999999999999988
Q ss_pred HcCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 354 HRGMK-PN----SITYCSLVSAYSK---AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 354 ~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
..... ++ ...+..+...+.. .|++++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 65211 11 3488999999999 99999999999999987654 7888999999999999999999999999985
Q ss_pred CCCCCHHH
Q 012111 426 HCVPDNIT 433 (471)
Q Consensus 426 ~~~p~~~~ 433 (471)
.|+...
T Consensus 479 --~~~~~~ 484 (514)
T 2gw1_A 479 --ARTMEE 484 (514)
T ss_dssp --CSSHHH
T ss_pred --ccccHH
Confidence 565443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7.5e-20 Score=167.25 Aligned_cols=327 Identities=10% Similarity=-0.005 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
+.+......+...|++++|++.|+.+.+.. +.+..++..+..++...|++++|...++.+.+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 344555566667777777777777777654 556667777777777777777777777777765322 56677777777
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKP----DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
+...|++++|...|+++.+. .| +...+..+..... ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 77777777777777777652 33 2223332211100 011222345566667
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 012111 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...+
T Consensus 135 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777766653 4455666666777777777777777777766543 455666667777777777777777777
Q ss_pred HHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHH
Q 012111 315 DFMQKRFFFPTVVTYN------------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIM 378 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 378 (471)
+...+.... +...+. .+...+...|++++|...++++...... +. ..+..+...+...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 766654322 222222 2255677888888888888888775322 22 23445677788888888
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 012111 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYN 442 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 442 (471)
+|...++.+.+..+. +..++..+..++...|++++|.+.|+++.+. .|+ ...+..+..+..
T Consensus 290 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 290 EAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 888888888776544 6778888888888888888888888888874 454 445555544443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=6.9e-20 Score=167.48 Aligned_cols=326 Identities=12% Similarity=-0.016 Sum_probs=210.2
Q ss_pred hhhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHh
Q 012111 46 EAEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125 (471)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (471)
.....+...+++..+...+...+...| ..+..+......+...|++++|++.|+.+.+.. +.+...+..+..++.
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHH
Confidence 345566777888888888888877543 456777788888899999999999999999875 567789999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 012111 126 KCKQPEQASLLFEVMLSDGLK--PSVDVYTAL------------VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 191 (471)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (471)
..|++++|...|+.+.+.... .+...+..+ ...+...|++++|++.++++.+. .+.+...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 999999999999999986320 144445444 34555555555555555555542 13344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 012111 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271 (471)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (471)
...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+...+.. +.+...+..+...
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~------ 231 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQV------ 231 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHH------
Confidence 555555555555555555555442 3344555555555555555555555555554432 1122211111000
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 012111 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV----VTYNIVIETFGKAGHIEKMEE 347 (471)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~ 347 (471)
. .......+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|..
T Consensus 232 -----------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 232 -----------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -----------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 0 0011122355677778888888888777765332 22 224456677888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 348 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
.+++..+.. +.+..++..+...+...|++++|...|+++.+..+. +...+..+..+..
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 888887763 336778888888888888888888888888877654 5556665555543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.2e-20 Score=179.58 Aligned_cols=367 Identities=10% Similarity=0.002 Sum_probs=288.9
Q ss_pred hhHHHHHHHhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhc
Q 012111 47 AEKDLSKILRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK 126 (471)
Q Consensus 47 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (471)
....+.+.+++..+...+...+...| ..+..+......+.+.|++++|++.|+.+.+.+ |.+..++..+..++..
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP---NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHH
Confidence 44555666777778888887777543 446777788888899999999999999999875 6778899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCC------------------------------------CCHH--------------------
Q 012111 127 CKQPEQASLLFEVMLSDGLK------------------------------------PSVD-------------------- 150 (471)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~------------------------------------~~~~-------------------- 150 (471)
.|++++|...|+.+...... |+..
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 99999999999644211100 1111
Q ss_pred ----------HHHHHHHHHH--------hcCCHHHHHHHHHHhhcCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHH
Q 012111 151 ----------VYTALVSAYG--------QSGLLDEAFSTINDMKSVSDCKPD-----VYTYSILIKSCTKFHRFDLIEKI 207 (471)
Q Consensus 151 ----------~~~~li~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~ 207 (471)
....+...+. ..|++++|+.+|+++.+.....++ ..++..+...+...|+++.|...
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111111111 124788999999999873221111 23566777788899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 208 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 287 (471)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 287 (471)
++.+.+. .|+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++....
T Consensus 266 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 266 LQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 9999987 4568889999999999999999999999998874 5568889999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHH
Q 012111 288 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----MKPNSI 362 (471)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~ 362 (471)
+.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. ......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 45678899999999999999999999999988743 356788899999999999999999999987642 111223
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 363 TYCSLVSAYSKA----------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 363 ~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
.+......+... |++++|...++.+.+..+. +..++..+..+|...|++++|.+.|+++.+.
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345556777777 9999999999999987665 7889999999999999999999999999885
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=5.8e-17 Score=154.62 Aligned_cols=339 Identities=11% Similarity=0.000 Sum_probs=290.9
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGK----CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----S 162 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 162 (471)
.+++++|++.|+.+.+.+ +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999998754 56788888888888 899999999999998864 67788888888888 7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 012111 163 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AK 234 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~ 234 (471)
+++++|+..|++... . -+...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAE-Q---GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 899999999999987 2 356777888888877 789999999999999876 77888888888887 89
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 012111 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGM 306 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~ 306 (471)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++
T Consensus 202 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC
T ss_pred CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC
Confidence 9999999999998754 56678888888876 889999999999998754 56677777888887 899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHH
Q 012111 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIM 378 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~ 378 (471)
.++|...|+...+.+ +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.+
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 999999999988763 556777788888877 89999999999999875 5567788888888766 789
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 012111 379 KVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAA 450 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 450 (471)
+|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999874 67888899999998 899999999999999865 67788888888888 8999999
Q ss_pred HHHHHHHHHhhh
Q 012111 451 QNLENKMIAMKE 462 (471)
Q Consensus 451 ~~~~~~m~~~~~ 462 (471)
...++++.+.++
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999999984
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.7e-19 Score=162.99 Aligned_cols=287 Identities=10% Similarity=-0.026 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012111 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230 (471)
Q Consensus 151 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 230 (471)
.+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 34444444444455555555555444321 2223333344444445555555555555554432 22344455555555
Q ss_pred HccC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 012111 231 GKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309 (471)
Q Consensus 231 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 309 (471)
...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 5555 5555555555554432 2233445555555555555555555555554432 2233444445555555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 310 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--------MKPNSITYCSLVSAYSKAGLIMKVD 381 (471)
Q Consensus 310 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~a~ 381 (471)
|...++.+.+... .+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666655555432 244556666666666666666666666665431 1223456677777777777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCCH
Q 012111 382 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAY-NALGMT 447 (471)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 447 (471)
..++++.+..+. +...+..+..++...|++++|.+.|+++.+. .| +...+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 777777665544 5667777777777777777777777777664 34 555666666666 344543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.8e-19 Score=160.60 Aligned_cols=289 Identities=11% Similarity=-0.008 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS 157 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (471)
+..+......+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++.+.+.... +...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 4445555555555666666666666665543 444445555555555666666666666665554322 4455555555
Q ss_pred HHHhcC-CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012111 158 AYGQSG-LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236 (471)
Q Consensus 158 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 236 (471)
.+...| ++++|...|++..... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 555555 5566666665555421 2233445555555555555555555555554432 22233344444445555555
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 316 (471)
++|.+.++++.+. . +.+...+..+...+...|++++|...++.
T Consensus 176 ~~A~~~~~~al~~------------------------------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 176 KLAERFFSQALSI------------------------------------A-PEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHTT------------------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------------------------------------C-CCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5555555554443 2 33344444444445555555555555444
Q ss_pred HHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 317 MQKRF--------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388 (471)
Q Consensus 317 ~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 388 (471)
+.+.. .......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 43321 12234456666666666666666666666666543 2245566666666666677777777666666
Q ss_pred hCCCCcCHHHHHHHHHHH-HhcCC
Q 012111 389 NSDVILDTPFFNCIISAY-GQAGD 411 (471)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~-~~~g~ 411 (471)
+..+. +...+..+..++ ...|+
T Consensus 298 ~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred ccCCC-chHHHHHHHHHHHHHhCc
Confidence 65443 555556565555 33444
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=7e-20 Score=168.25 Aligned_cols=293 Identities=9% Similarity=-0.037 Sum_probs=204.5
Q ss_pred cCCHHHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 012111 162 SGLLDEAFS-TINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 238 (471)
Q Consensus 162 ~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 238 (471)
.|++++|++ .|++........| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 6665443221112 23445566666667777777777777776654 3456666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHH
Q 012111 239 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI---------------LTKSYGR 303 (471)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~ 303 (471)
|...|+++.+.. +.+..++..+...+...|++++|...++++.... +.+...+.. .+..+..
T Consensus 117 A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 777777766653 4456666677777777777777777777766543 112111111 2333348
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 304 AGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 382 (471)
.|++++|...++.+.+..... +...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999888764332 47788889999999999999999999988863 4467889999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV----------PDNITFATMIQAYNALGMTEAAQN 452 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~ 452 (471)
.++++.+..+. +..++..+..+|...|++++|...|+++.+..-. ....+|..+..++...|+.++|..
T Consensus 273 ~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99998887654 7788999999999999999999999988763111 126889999999999999999998
Q ss_pred HHHHHHHh
Q 012111 453 LENKMIAM 460 (471)
Q Consensus 453 ~~~~m~~~ 460 (471)
++++.++.
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 88765543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.1e-16 Score=154.33 Aligned_cols=397 Identities=9% Similarity=0.021 Sum_probs=264.8
Q ss_pred HhhHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHH-hcCCCHHHH
Q 012111 55 LRTEFAIKNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVML-GKCKQPEQA 133 (471)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a 133 (471)
.+...+...++..+.. .+..+..+...+....+.|++++|.++|+.+.... |+...|...+... ...|+.+.|
T Consensus 26 ~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp SCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred CCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhH
Confidence 3444444445544442 23445566677777777778888888888777653 4666666665432 344565555
Q ss_pred HH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH---
Q 012111 134 SL----LFEVMLSD-GLK-PSVDVYTALVSAYGQ---------SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC--- 195 (471)
Q Consensus 134 ~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--- 195 (471)
.+ +|+..... |.. .+...|...+..... .|+++.|..+|++..+ .+.......|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhh
Confidence 44 66655442 433 245667766665544 5677888888888776 22111123333222211
Q ss_pred ----------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHcc----CCH----HHHH
Q 012111 196 ----------TKFHRFDLIEKILAEMS------YLG---IECS--------AVTYNTIIDGYGKA----KKF----EEME 240 (471)
Q Consensus 196 ----------~~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~ 240 (471)
.+.+++..|..++..+. +.. ++|+ ...|...+...... ++. ..+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 12344556666655422 111 2333 23444444333221 222 3677
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012111 241 SSFSAMVESGGCHPDIFTLNSMISAYGN-------SGNIE-------KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 306 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 306 (471)
.+|++..... +.+...|..++..+.+ .|+++ +|..+|++....-.+.+...+..++..+.+.|+
T Consensus 259 ~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 259 FAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 7888887763 4567778888887775 68877 899999998863235568889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHH
Q 012111 307 YDKMRSVMDFMQKRFFFPTV-VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSIL 384 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~ 384 (471)
+++|..+|+.+.+.... +. ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|
T Consensus 337 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 99999999999886322 32 478888888889999999999999998753 2233333332222 34689999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 385 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
+...+..+. +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++.+.-
T Consensus 415 e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 415 ELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 998876544 68889999999999999999999999998863 2232 4578888888888999999999999999888
Q ss_pred hc
Q 012111 462 EN 463 (471)
Q Consensus 462 ~~ 463 (471)
|.
T Consensus 494 p~ 495 (530)
T 2ooe_A 494 RE 495 (530)
T ss_dssp HH
T ss_pred ch
Confidence 74
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.4e-19 Score=166.12 Aligned_cols=266 Identities=8% Similarity=-0.082 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 012111 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263 (471)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 263 (471)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 34457777788888888888888888887764 4567888888888888888888888888887763 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHH
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKAD-----------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNI 331 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 331 (471)
.+|...|++++|...++++.... |+ ...+..+...+...|++++|...++.+.+.... .+...+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 88888888888888888886642 21 223345577888999999999999999886433 15788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 9999999999999999999998864 446889999999999999999999999999887655 68889999999999999
Q ss_pred HHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 412 VEKMGELFLTMKERH---CV--------PDNITFATMIQAYNALGMTEAAQNLENK 456 (471)
Q Consensus 412 ~~~a~~~~~~~~~~~---~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (471)
+++|...|+++.+.. .. .+...|..+..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999987631 00 1357888999999999999998877665
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=8.1e-19 Score=161.13 Aligned_cols=305 Identities=10% Similarity=-0.028 Sum_probs=171.5
Q ss_pred HhhcHHHHHH-HHHHhhhccCccC--ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 90 KQKKWQLALK-IFGLLRQQQWYQA--RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD 166 (471)
Q Consensus 90 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 166 (471)
-.|++++|++ .|+.+.....-.| +...+..+...+.+.|++++|...|+.+.+... .+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6666554321112 244566777777777777777777777776643 25667777777777777777
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
+|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.. ..
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~-------~~--------- 176 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEE-------GA--------- 176 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH-------Hh---------
Confidence 7777777766522 3456666677777777777777777777776653 111111111000 00
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 012111 247 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 324 (471)
.. ..+. ..+..+ ..+...|++++|...++++.... +. +..++..+...+...|++++|...++.+.+... .
T Consensus 177 -~~--~~~~-~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~ 249 (368)
T 1fch_A 177 -GG--AGLG-PSKRIL-GSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-N 249 (368)
T ss_dssp -------------CTT-HHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred -hh--hccc-HHHHHH-HHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-C
Confidence 00 0000 001112 22225566666666666665543 12 455666666666666666666666666655422 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc----------
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL---------- 394 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 394 (471)
+...+..+...+...|++++|...++++.... +.+..++..+...+.+.|++++|...++++.+..+..
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 45566666666667777777777777666542 3345666667777777777777777776665432221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 395 DTPFFNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
...+|..+..+|...|++++|..++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1566777777777777777777766543
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=4.9e-15 Score=141.28 Aligned_cols=332 Identities=15% Similarity=0.054 Sum_probs=281.0
Q ss_pred HHHHHHHhhhccCccCChhHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 012111 97 ALKIFGLLRQQQWYQARCQTFTKLMVMLGK----CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEA 168 (471)
Q Consensus 97 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a 168 (471)
+++.++...+. .+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 45555555543 366778888888877 899999999999998864 67888889999998 8999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 012111 169 FSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEME 240 (471)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~ 240 (471)
++.|++..+ . -+...+..|...|.. .+++++|.+.|+...+.| +...+..+...|.. .+++++|.
T Consensus 99 ~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAAL-K---GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999987 2 366777788888887 789999999999999876 67788888888887 78999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 012111 241 SSFSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRS 312 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~ 312 (471)
+.|++..+.+ +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+++++|..
T Consensus 172 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 172 EWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998764 67788888888888 899999999999998865 56778888888886 789999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHH
Q 012111 313 VMDFMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA-----GLIMKVDSI 383 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~ 383 (471)
.|+...+.+ +...+..+...|.. .++.++|..+|++..+.| +...+..+...|... ++.++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999988763 45667777777877 899999999999998765 566778888888887 899999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 012111 384 LRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENK 456 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 456 (471)
+++..+.+ +...+..+...|...| ++++|+++|++..+. .++..+..|...|.. .++.++|.+++++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999876 5677888888888766 899999999999986 368888889999988 8999999999999
Q ss_pred HHHhh
Q 012111 457 MIAMK 461 (471)
Q Consensus 457 m~~~~ 461 (471)
+.+.+
T Consensus 393 A~~~~ 397 (490)
T 2xm6_A 393 AAEQG 397 (490)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 98765
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=6e-18 Score=152.50 Aligned_cols=266 Identities=5% Similarity=-0.058 Sum_probs=174.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 012111 189 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 268 (471)
Q Consensus 189 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (471)
..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHH
Confidence 333444444445555555554444432 2244444444555555555555555555544432 2334444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 269 SGNIEKMEKWYNEFNLMGVKADIQTLNIL--------------TK-SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333 (471)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 333 (471)
.|++++|...++++.... +.+...+..+ .. .+...|++++|...++.+.+.... +...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 555555555555544332 1111111111 22 366677888888888888776433 677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 413 (471)
..+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..+. +..++..+..++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHH
Confidence 88888999999999998888763 346778888889999999999999999988876554 6778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 414 KMGELFLTMKERHCVPD-------------NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 414 ~a~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+|.+.++++.+. .|+ ...+..+..++...|++++|..++++.++.-++
T Consensus 258 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 258 LAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999988764 233 678888889999999999999998877666554
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=6.2e-18 Score=155.08 Aligned_cols=265 Identities=9% Similarity=-0.059 Sum_probs=134.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 012111 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196 (471)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (471)
+..+...+.+.|++++|...|+.+.+... .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAVSYT 144 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 44444444444444444444444444321 134444444444444444444444444444311 223444444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 012111 197 KFHRFDLIEKILAEMSYLGIE---------CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (471)
..|++++|...++++.+.... .....+..+...+...|++++|...|+++.+..+...+...+..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 444444444444444432100 01122333455566666666666666666655322224556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 347 (471)
..|++++|...|+++.... +.+..++..+..+|...|++++|...|+.+.+.... +...+..+..+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666666666665543 445566666666666666666666666666554222 35566666666666666666666
Q ss_pred HHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 348 YFKKMKHRGMK-----------PNSITYCSLVSAYSKAGLIMKVDSILRQ 386 (471)
Q Consensus 348 ~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 386 (471)
.|+++.+.... .+..+|..+..++...|+.+.+..+..+
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 66666543100 0245667777777777777776666544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.9e-17 Score=149.24 Aligned_cols=277 Identities=10% Similarity=-0.004 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
..+......+...|++++|+++|+.+.+.. +.+...+..+..++...|++++|...++.+.+... .+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 445566667778889999999998888764 56777888888888888999999998888887643 367788888888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCH
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID--GYGKAKKF 236 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~ 236 (471)
+...|++++|.+.++++.... +.+...+..+...+ ++......+.. .+...|++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888887632 12222222220000 00001111111 24445555
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 316 (471)
++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.
T Consensus 155 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 155 RECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555442 3344555555555555555555555555555432 33455555556666666666666666665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012111 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP-----------NSITYCSLVSAYSKAGLIMKVDSILR 385 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 385 (471)
+.+... .+...+..+...+...|++++|...++++....... +..++..+..++...|+.++|..+++
T Consensus 232 a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 232 ALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555422 244555566666666666666666666665542111 24556666666666666666666665
Q ss_pred H
Q 012111 386 Q 386 (471)
Q Consensus 386 ~ 386 (471)
.
T Consensus 311 ~ 311 (327)
T 3cv0_A 311 Q 311 (327)
T ss_dssp C
T ss_pred H
Confidence 4
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-16 Score=149.47 Aligned_cols=364 Identities=8% Similarity=-0.089 Sum_probs=210.5
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhc----cC---ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C--CCCCH
Q 012111 84 ALDEAIKQKKWQLALKIFGLLRQQ----QW---YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-----G--LKPSV 149 (471)
Q Consensus 84 ~l~~~~~~~~~~~A~~~~~~~~~~----~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~ 149 (471)
+-......|++++|++.|+++.+. .+ -+....+|+.+..+|...|++++|...+++..+. + .....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 334445678888888888876542 00 1223456777888888888888888888776542 1 11235
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 012111 150 DVYTALVSAYGQS--GLLDEAFSTINDMKSVSDCKPDVYTYSILIKS---CTKFHRFDLIEKILAEMSYLGIECSAVTYN 224 (471)
Q Consensus 150 ~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 224 (471)
.++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++.
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 5666665555543 46788888888877632 2334444444443 334566677777777777654 34556665
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 225 TIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 300 (471)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 300 (471)
.+...+.. .|++++|.+.+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+..++..+..+
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 55544443 456777888888777653 5566677778888888888888888888877653 4456666666666
Q ss_pred HHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 012111 301 YGRA-------------------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 361 (471)
Q Consensus 301 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 361 (471)
|... +..+.|...++...+.... +...+..+...+...|++++|...|++..+....+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 6432 1245566666666554322 3445667777777888888888888877765332221
Q ss_pred H--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 362 I--TYCSLVS-AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 362 ~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
. .+..+.. .....|+.++|+..|++..+..+. ..... +....+.++++...+. -+.+..+|..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~~~~~~l~~-~p~~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQKIAKMRLSK-NGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHHHHHHHHHH-CC-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 1 1222222 234567778888888777765433 21111 1123344455555443 234678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 012111 439 QAYNALGMTEAAQNLENKMIAMKENSGK 466 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 466 (471)
.+|...|++++|.+.++++++.++..+.
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHCC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999887654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=9.3e-17 Score=141.51 Aligned_cols=248 Identities=8% Similarity=0.068 Sum_probs=131.8
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDV--YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 237 (471)
...|++..|+..++++.. ..|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...++.+
T Consensus 10 ~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 345555555555554432 12222 2333344555555555555544432 1 1334455555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012111 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317 (471)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (471)
+|++.++++....-.+.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555544320122333444444555555666666555554 344555555556666666666666666665
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 012111 318 QKRFFFPTVVTY---NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394 (471)
Q Consensus 318 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (471)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..+.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 5542 222111 112222333466666777766666652 445666666666666677777777777666665544
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 012111 395 DTPFFNCIISAYGQAGDVEK-MGELFLTMKE 424 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 424 (471)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56666666666666666654 4566666665
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.8e-15 Score=145.79 Aligned_cols=379 Identities=9% Similarity=0.023 Sum_probs=278.4
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (471)
+.+...+...+. +.+.|++++|..+|+.+.+.. |.+...|...+..+.+.|++++|..+|+++... .|+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 445667777777 478899999999999999874 778889999999999999999999999999987 468888888
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHhhcCCCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCC
Q 012111 155 LVSAY-GQSGLLDEAFS----TINDMKSVSDCKP-DVYTYSILIKSCTK---------FHRFDLIEKILAEMSYLGIECS 219 (471)
Q Consensus 155 li~~~-~~~~~~~~a~~----~~~~~~~~~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~ 219 (471)
.+... ...|+.+.|.+ +|+......|..| +...|...+..... .|+++.|..+|++..+......
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 35677766654 7777765445443 56678887776654 6889999999999987311111
Q ss_pred HHHHHHHHHHH-------------HccCCHHHHHHHHHHHH------HcC--CCCCC--------HHHHHHHHHHHHhc-
Q 012111 220 AVTYNTIIDGY-------------GKAKKFEEMESSFSAMV------ESG--GCHPD--------IFTLNSMISAYGNS- 269 (471)
Q Consensus 220 ~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~--~~~~~--------~~~~~~l~~~~~~~- 269 (471)
...|....... .+.+++..|..++.... +.. .+.|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23443322211 13456777777776532 110 02333 24555555433322
Q ss_pred ---CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCHHH
Q 012111 270 ---GNI----EKMEKWYNEFNLMGVKADIQTLNILTKSYGR-------AGMYD-------KMRSVMDFMQKRFFFPTVVT 328 (471)
Q Consensus 270 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 328 (471)
++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 47778898887753 6678888888888876 68887 89999999886323336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-S-ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA- 405 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 405 (471)
|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 999999999999999999999999985 454 3 58899999999999999999999999986433 33334333222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+...|+.++|..+|++..+. .+-+...|..++..+.+.|+.++|+.+|++++...+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 34689999999999999875 2336888999999999999999999999999988654
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=4.6e-17 Score=143.47 Aligned_cols=256 Identities=8% Similarity=0.042 Sum_probs=209.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 012111 193 KSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 270 (471)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (471)
+.....|+++.|+..++..... .|+ ......+.++|...|+++.|...++.. ..|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCC
Confidence 3455679999999998876543 333 245566789999999999999876542 3667788889999999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 271 NIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 349 (471)
Q Consensus 271 ~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 349 (471)
+.++|++.++++...+. +-+...+..+...+...|++++|...++. ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988764 44566777788999999999999999987 357888999999999999999999999
Q ss_pred HHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 350 KKMKHRGMKPNSITY---CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 426 (471)
Q Consensus 350 ~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 426 (471)
+++.+.. |+.... ...+..+...|++++|..+|+++.+..+. +...++.+..++.+.|++++|...|++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999874 553211 22334445569999999999999987654 88999999999999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhhhcCC
Q 012111 427 CVPDNITFATMIQAYNALGMTEA-AQNLENKMIAMKENSG 465 (471)
Q Consensus 427 ~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~~~ 465 (471)
+-++.++..++..+...|+.++ +.++++++++..|+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 3378899999999999999876 6799999999998753
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=168.81 Aligned_cols=113 Identities=12% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNL---MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 333 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 333 (471)
.+|++||.+||+.|++++|.++|.+|.+ .|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3455555555555555555555544432 2344455555555555555555555555555554444444555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012111 334 ETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSLVS 369 (471)
Q Consensus 334 ~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~ 369 (471)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 44444444 2344444455544444444444444443
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.1e-14 Score=146.35 Aligned_cols=330 Identities=11% Similarity=0.090 Sum_probs=216.5
Q ss_pred ccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccC-ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 012111 73 YKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDV 151 (471)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 151 (471)
.....|+.+....+.+...|.+.+|+++++.+.-.+. +..+...-+.++....+. +..+..+..+.+... +
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d--- 1051 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D--- 1051 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---
Confidence 3467788999999999999999999999999985431 223445556666665555 445555555554421 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012111 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 231 (471)
Q Consensus 152 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 231 (471)
...+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 23366667778888888888877532 1222222322 556777777777754 24667777778888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 012111 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311 (471)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 311 (471)
..|++++|.+.|.+. .|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++..
T Consensus 1117 ~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred hCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 888888888777543 255567777777888888888888877665543 33333334777777777777544
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 312 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
... + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++..
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 332 1 235556666777777777777777777763 367777777777777777777777652
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 392 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|..+++..+..+
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 456666666777777776666665443 22355556666677777777777777776665544
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=169.57 Aligned_cols=119 Identities=14% Similarity=0.224 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012111 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQ---KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 366 (471)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 366 (471)
-..||++||++|++.|++++|..+|..|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44577777777777777777777776654 346777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 367 LVSAYSKAGL-IMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 367 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 35677777777777777777777777765554
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=7.3e-18 Score=151.81 Aligned_cols=318 Identities=11% Similarity=0.058 Sum_probs=141.6
Q ss_pred HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 169 (471)
+.|++++|.++++.+ ++..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 567788899888877 23358899999999999999999999653 47778888899998899999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 012111 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 249 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (471)
..++...+ . .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark-~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHH-h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 97776665 2 4557778888999999999988887774 366678999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 012111 250 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 329 (471)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 329 (471)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 25888999999999999999999887 378889999999999999999955544322 244445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCc------CHHHHHHH
Q 012111 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-NSDVIL------DTPFFNCI 402 (471)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~------~~~~~~~l 402 (471)
..++..|.+.|++++|..+++...... +-....|+-+..+|++- ++++..+.++... +.+++| +...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 568888899999999999998887654 44566777777777655 3344333333322 222322 34567888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 458 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (471)
...|...++++.|.. .|.+. +|+.-.-..+.....+.++.+--.+...=-+
T Consensus 289 ~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 289 VFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 888888888887766 56664 3343333334455556666555444443333
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.3e-17 Score=147.58 Aligned_cols=330 Identities=12% Similarity=0.076 Sum_probs=151.1
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (471)
.+..+..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++..++. .+++.+.+.++
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 3457778888888889999999888543 45568888888888889999998877766653 44577788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012111 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 236 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 236 (471)
.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++
T Consensus 102 ~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp -------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 89999898888877663 366678888888999999999999988876 3578888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 316 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 316 (471)
++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++|..+++.
T Consensus 165 q~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 165 QAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999888877 1678888889999999999888554443 233444455688888889999999888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 317 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKP------NSITYCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
..... .-....|+-+.-.|++- ++++..+.++...+. +++| +...|.-++..|...++++.|.. .|.+
T Consensus 233 aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~ 307 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMN 307 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHH
T ss_pred HhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHh
Confidence 77654 33566777776666654 334433333322221 2222 23456677777777778777665 3343
Q ss_pred C-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 390 S-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456 (471)
Q Consensus 390 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (471)
. ....+...| .....+..+.+---+...-..+. .| ..++-|+.++...=+...+..++++
T Consensus 308 h~~~a~~~~~f---~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 308 HPTDAWKEGQF---KDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp STTTTCCHHHH---HHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred CChhhhhhHHH---HHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3 122233333 34445555544333333333332 23 3366677777666677777666654
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.2e-15 Score=129.59 Aligned_cols=224 Identities=13% Similarity=0.008 Sum_probs=114.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV--KAD----IQTLNI 296 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 296 (471)
+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++++..... .++ ..++..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3334444444444444444444444332 3333444444444444444444444444433210 011 244444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+...+...|++++|...++.+.+.. |+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 4555555555555555555544431 221 22344455556666666555531 1234455555666666666
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (471)
+++|...++++.+..+. +..++..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666555433 45566666666666666666666666665531 22455566666666666666666666666
Q ss_pred HHHhh
Q 012111 457 MIAMK 461 (471)
Q Consensus 457 m~~~~ 461 (471)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66665
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.2e-14 Score=137.95 Aligned_cols=369 Identities=11% Similarity=-0.037 Sum_probs=245.2
Q ss_pred hhHHHHHHHhhHHHHHHHHHhhhhhhc---cCCCc---hHHHHHHHHHHHhhcHHHHHHHHHHhhhccC-----c-cCCh
Q 012111 47 AEKDLSKILRTEFAIKNIEKKVSSKKY---KNLWP---KPVLEALDEAIKQKKWQLALKIFGLLRQQQW-----Y-QARC 114 (471)
Q Consensus 47 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~ 114 (471)
........+++++|++.+...+...+. ....+ ..+...-..+...|++++|+..|+.+.+... . ....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 345556677888898888877664221 11222 2344566677889999999999998875320 1 1234
Q ss_pred hHHHHHHHHHhc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 012111 115 QTFTKLMVMLGK--CKQPEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 189 (471)
Q Consensus 115 ~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (471)
.++..+..++.. .+++++|...|++..+..+. ++..+..+..+ +...++.++|++.+++..+.. +.+..++.
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~ 213 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHH
Confidence 566666555544 46799999999999887433 56666666555 445678889999999887732 44566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 012111 190 ILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 265 (471)
Q Consensus 190 ~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (471)
.+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+++..+.. +.+..++..+..+
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHH
Confidence 66555544 467889999999988765 5578889999999999999999999999998874 5567778888777
Q ss_pred HHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 266 YGNS-------------------GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 326 (471)
Q Consensus 266 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 326 (471)
|... +..+.|...+++..... +.+..++..+...|...|++++|...|++..+....+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 7542 23567788888876654 555667888999999999999999999999887544332
Q ss_pred H--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012111 327 V--TYNIVIE-TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403 (471)
Q Consensus 327 ~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (471)
. .+..+.. .....|+.++|+..|.+..+. .|+...... ....+.++++.....++. +..+|..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~p~-~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKNGA-DSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHCC--CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 2 2222322 235679999999999999885 555432222 234455666666666654 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 012111 404 SAYGQAGDVEKMGELFLTMKERH-CVPDNITF 434 (471)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~ 434 (471)
.+|...|++++|++.|++..+.| ..|++.+|
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHCC----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999998754 23554443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=3.4e-15 Score=125.69 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419 (471)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 419 (471)
|++++|...+++..+.. +-+...+..+...+...|++++|...|+++.+.+ .+...+..+..+|...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555432 1234455555555555555555555555555544 35555555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 420 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 420 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
++..+. -+.+...+..+...+...|++++|.+.+++.
T Consensus 175 ~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 175 AKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555543 1123444555555555555555555555443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-14 Score=126.27 Aligned_cols=225 Identities=11% Similarity=0.007 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCC----HHHHHH
Q 012111 187 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPD----IFTLNS 261 (471)
Q Consensus 187 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 261 (471)
.+..+...+...|++++|..++++..+.. .+...+..+..++...|++++|.+.+++..+... ..++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555544 4455555555666666666666666655544310 0111 355566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 341 (471)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 341 (471)
+...+...|++++|...|+++... .|+. ..+...|++++|...++.+..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 666666666666666666666553 2332 334555667777777777666422 134566677777778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 421 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 421 (471)
+++|...++++.... +.+..++..+...+...|++++|...++.+.+..+. +...+..+..++...|++++|.+.|++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888877753 335677778888888888888888888887776544 577778888888888888888888887
Q ss_pred HHhC
Q 012111 422 MKER 425 (471)
Q Consensus 422 ~~~~ 425 (471)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.6e-13 Score=120.13 Aligned_cols=225 Identities=12% Similarity=0.004 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLN 295 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (471)
..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 444445555555555555555555555442 133444555555555 555555555555555443 445555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012111 296 ILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSL 367 (471)
Q Consensus 296 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 367 (471)
.+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 556666666665555542 44555555555555 566666666666666543 44455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 368 VSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQ 439 (471)
Q Consensus 368 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 439 (471)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 666666666666666543 34555566666666 666666666666666542 2455555556
Q ss_pred HHHh----cCCHHHHHHHHHHHHHhhhc
Q 012111 440 AYNA----LGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 440 ~~~~----~g~~~~A~~~~~~m~~~~~~ 463 (471)
.|.. .+++++|.+.++++++.+|.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 6666 66666666666666666554
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=3.5e-14 Score=122.66 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 299 (471)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 3444555555555555555555555555442 3344455555555555555555555555554432 233444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 300 SYGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 378 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.+...|++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 5555555555555554444411122 22334444444444444444444444444432 112334444444444444444
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+|...++.+.+..+. +...+..+...+...|++++|.++++++.+
T Consensus 193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444444433222 333344444444444444444444444443
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=3e-13 Score=136.22 Aligned_cols=314 Identities=14% Similarity=0.137 Sum_probs=232.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 84 ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 163 (471)
Q Consensus 84 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 163 (471)
....+...|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 34455678888888888888632 112223332 26678888888887652 5778888999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012111 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 243 (471)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (471)
++++|++.|.+. -|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 999999988653 366777888888999999999999998877654 33333445888888888887544332
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 012111 244 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 323 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 323 (471)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+.+.
T Consensus 1191 ----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1191 ----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred ----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 345566777888889999999999999884 37888899999999999999888865
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012111 324 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 403 (471)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (471)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....+ .-....|+-|.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 2568888888888888888888876653 33466778899999999999999999998888766 33666777777
Q ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 012111 404 SAYGQA--GDVEKMGELFLTMKERHCVP------DNITFATMIQAYNALGMTEAAQN 452 (471)
Q Consensus 404 ~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 452 (471)
.+|.+. ++..++.++|..-.. ++| +...|.-++-.|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 777764 445555555553322 222 56778888899999999999873
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=1.1e-14 Score=122.52 Aligned_cols=200 Identities=11% Similarity=-0.019 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 217 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 296 (471)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (471)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 5677889999999999999999999999998764 5678889999999999999999999999998865 667888999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012111 297 LTKSYGRA-----------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365 (471)
Q Consensus 297 ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 365 (471)
+..++... |++++|...++...+..+. +...+..+...+...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 9999999999999887443 67788899999999999999999999999987 6889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 366 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
.+..++...|++++|...|+++.+..+. +...+..+..++...|++++|+..|++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999988765 78889999999999999999999988754
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.5e-14 Score=126.44 Aligned_cols=233 Identities=12% Similarity=-0.002 Sum_probs=100.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHH
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLNILTKSYGR 303 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 303 (471)
....+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++...+..+ ....|..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444432 1122234444444444444444444444444321111 12224444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 383 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 383 (471)
.|++++|...++...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443221 33444444455555555555555555444431 22333444444222233355555555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 012111 384 LRQVENSDVILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERH-CVPD------NITFATMIQAYNALGMTEAAQNL 453 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 453 (471)
++++.+..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555444332 34444444444444444 444555554444320 0121 13444444555555555555555
Q ss_pred HHHHHHhhhc
Q 012111 454 ENKMIAMKEN 463 (471)
Q Consensus 454 ~~~m~~~~~~ 463 (471)
++++++..|+
T Consensus 244 ~~~al~~~p~ 253 (272)
T 3u4t_A 244 WKNILALDPT 253 (272)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCcc
Confidence 5555555544
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=1.4e-14 Score=136.17 Aligned_cols=224 Identities=15% Similarity=0.106 Sum_probs=122.0
Q ss_pred HHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHH
Q 012111 222 TYNTIIDGYGKAK---KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS----GNIEKMEKWYNEFNLMGVKADIQTL 294 (471)
Q Consensus 222 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 294 (471)
.+..|...|...| +.++|++.|++..+.+ .++...+..+...|... +++++|..+|++.. . -+...+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHH
Confidence 5556666666666 6666666666666554 44444445555555443 56666666666665 2 233444
Q ss_pred HHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012111 295 NILTKS-Y--GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-----HIEKMEEYFKKMKHRGMKPNSITYCS 366 (471)
Q Consensus 295 ~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ 366 (471)
..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.. .| +...+..
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~ 323 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYY 323 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHH
Confidence 444444 2 34566666666666666553 4445555555554 34 6666666666655 22 4455555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 367 LVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 367 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
|...|.. ..+.++|...|+...+.| +......|...|.. ..+..+|..+|+...+.|. ++.......+
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l 399 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQL 399 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 5555554 236666666666666654 23344455555543 3466666666666666542 2222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 439 QAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
......++.++|.++.++..+..+.
T Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccc
Confidence 2222334556666666666555444
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=1.1e-13 Score=119.54 Aligned_cols=203 Identities=6% Similarity=-0.079 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (471)
..+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 345555555566666666666666655443 334555555566666666666666666655554222 445555555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012111 337 GKAGHIEKMEEYFKKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415 (471)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 415 (471)
...|++++|.++++++...+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666655522233 3445555555566666666666666665554433 455555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 416 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 416 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..+++++.+. .+.+...+..+...+...|+.++|.++++++++..|.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666665543 2234445555555566666666666666666655544
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=1.4e-13 Score=116.41 Aligned_cols=202 Identities=10% Similarity=0.027 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 298 (471)
+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34555666666666666666666666665542 3345556666666666666666666666665443 33455555555
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012111 299 KSYGRA-GMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 376 (471)
Q Consensus 299 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
..+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 556666 666666666655555211222 3445555555555555555555555555442 2234455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+++|...++.+.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555443312444444444555555555555555555543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=5.2e-14 Score=128.18 Aligned_cols=217 Identities=9% Similarity=0.018 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 012111 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-FEEMESSFSAMVESGGCHPDIFTLNSMI 263 (471)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 263 (471)
...|..+...+...|++++|++.+++.++.. +-+..+|+.+..++...|+ +++|+..|+++.+.. +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4456667777777777888888887777664 4457777777777777775 777777777777653 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHI 342 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 342 (471)
.++...|++++|+..|+++.... +-+...|..+..++...|++++|+..++++.+.... +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 77777777777777777776654 455666666666666677777777777666665333 45566666666666 4443
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012111 343 EKM-----EEYFKKMKHRGMKPNSITYCSLVSAYSKAG--LIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409 (471)
Q Consensus 343 ~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (471)
++| +..+++.+... +-+...|..+...+...| ++++|.+.+..+ +.++. +...+..+..+|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHH
Confidence 555 35555555532 223445555555555555 355555555555 32222 444555555555544
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.1e-14 Score=123.24 Aligned_cols=199 Identities=11% Similarity=0.115 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 299 (471)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4445555566666666666666666665542 3345556666666666666666666666665443 334555555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 300 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 379 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
.+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666665555432 244455555555556666666666666555542 2244555555555555555555
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 380 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
|...++++.+..+. +..++..+..+|...|++++|.+.++++.+
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555544332 444555555555555555555555555554
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=6.5e-14 Score=122.42 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKP--SVDVYTALVS 157 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~ 157 (471)
.+......+...|++++|++.|+.+.+.. +.+...+..+..++...|++++|...++...+.+..+ ...+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44455556667777777777777777654 4455567777777777777777777777777632111 2334666777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 012111 158 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 237 (471)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 237 (471)
.+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766522 2344556666666666666666666666665542 334555555552233334666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 012111 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN---IEKMEKWYNEFN 283 (471)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 283 (471)
+|.+.|+++.+.. +.+...+..+..++...|+ +++|...+++..
T Consensus 160 ~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 160 KADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 6666666665542 3334555555555555555 555555555543
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=1.2e-14 Score=127.42 Aligned_cols=245 Identities=11% Similarity=-0.031 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 199 HRFDLIEKILAEMSYLGI---ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 275 (471)
Q Consensus 199 ~~~~~a~~~~~~~~~~g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 275 (471)
|++++|...++++.+... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHHH
Confidence 445555555555554321 1123445555555555566666666555555542 33455555555556666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 276 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
...|+++.... +.+..++..+..++...|++++|...++.+.+.. |+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666555432 3344555556666666666666666666655542 22222333333444556666777666655554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 012111 356 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL---DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 432 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 432 (471)
. +++...+ .++..+...++.++|...++.+.+..... +...+..+...|...|++++|...|+++.+. .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 2 2232222 35555556666666666666665432211 1456677777777788888888888877764 3422
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 012111 433 TFATMIQAYNALGMTEAAQNLE 454 (471)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~ 454 (471)
+.....++...|++++|.+.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566677777776655
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=2.1e-13 Score=115.31 Aligned_cols=203 Identities=13% Similarity=0.022 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (471)
..+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 344445555555555555555555554432 33344555555555555555555555555544322 1344455555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012111 337 GKA-GHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 414 (471)
Q Consensus 337 ~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 414 (471)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+. +...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555554211222 344455555555555555555555555544332 34455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 415 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 415 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
|.++++++.+..-..+...+..+...+...|+.+.|..+++.+.+..|
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 555555554431102344444444455555555555555555554444
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.4e-12 Score=114.00 Aligned_cols=219 Identities=11% Similarity=-0.028 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 012111 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMI 263 (471)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 263 (471)
+..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 81 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHHH
Confidence 3333344444444444444444444321 23334444444444 444444444444444332 333444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 264 SAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335 (471)
Q Consensus 264 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 335 (471)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 444444444444444432 34444444444444 455555555555544432 33344444444
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 336 FGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 336 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 444 555555555555555542 34445555555555 556666666665555543 2444555555555
Q ss_pred h----cCCHHHHHHHHHHHHhC
Q 012111 408 Q----AGDVEKMGELFLTMKER 425 (471)
Q Consensus 408 ~----~g~~~~a~~~~~~~~~~ 425 (471)
. .+++++|.+.|++..+.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 5 56666666666665554
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=9.5e-15 Score=127.95 Aligned_cols=223 Identities=11% Similarity=-0.000 Sum_probs=147.1
Q ss_pred HhhcHHHHHHHHHHhhhccCc--cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQWY--QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE 167 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 167 (471)
..|++++|++.|+.+.+.... +.+..++..+...+...|++++|...|+.+.+.... +..+|..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 457888888888888875311 224567788888888888888888888888776433 67788888888888888888
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 168 AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888887632 3356677777778888888888888888877653 333333334444456677888888777666
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 012111 248 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 320 (471)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (471)
... +++...+ .++..+...++.++|...+.+....... .+...+..+...|...|++++|...|+...+.
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 653 3333333 3555566667777777777766543210 01344555555555666666666666555554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.7e-13 Score=124.82 Aligned_cols=197 Identities=9% Similarity=0.010 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 012111 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILI 192 (471)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll 192 (471)
..+|..+..++.+.|++++|+..++..++.... +..+|+.+..++...|+ +++|+..|++..... +-+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 456666777777777777777777777765433 56677777777777775 777777777776521 33556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCC
Q 012111 193 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGN 271 (471)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 271 (471)
.++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +.+...|+.+..++.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 66667777777777777666654 3356666666666666666666666666666653 3455566666666666 444
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 012111 272 IEKM-----EKWYNEFNLMGVKADIQTLNILTKSYGRAG--MYDKMRSVMDFM 317 (471)
Q Consensus 272 ~~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~ 317 (471)
.++| +..|++.+... +-+...|..+..++...| ++++|...+..+
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 3444 24444444432 233444444444444444 244444444433
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=5.9e-14 Score=120.38 Aligned_cols=199 Identities=7% Similarity=0.008 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 012111 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267 (471)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (471)
|..+...+...|+++.|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 3333344444444444444444444332 2234444444444444455555555554444432 223444444445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 347 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 347 (471)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544432 33344445555555555555555555555544322 134455555555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 348 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 348 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
.++++.... +.+..++..+...+...|++++|...++++.+..+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 666555542 22455556666666666666666666666655443
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=4e-13 Score=126.17 Aligned_cols=344 Identities=12% Similarity=0.060 Sum_probs=234.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 84 ALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160 (471)
Q Consensus 84 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (471)
+...+.+.|++++|++.|+.+.+.+ +...+..+...|...|+. ++|...|+...+. ++..+..|...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 3455678999999999999998764 445566677777778888 8999999998864 5666777777565
Q ss_pred hcC-----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012111 161 QSG-----LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF---DLIEKILAEMSYLGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 161 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 232 (471)
..+ +.++|+..|++... .| .++ .+..|...|...+.. ..+.+.+......| +......+...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~-~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFA-NG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHH-TT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHH-CC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 555 78899999999987 33 233 566677777665543 34566666666555 34556677777877
Q ss_pred cCCHHHHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 012111 233 AKKFEEME----SSFSAMVESGGCHPDIFTLNSMISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA- 304 (471)
Q Consensus 233 ~~~~~~a~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 304 (471)
.+.++.+. .+++... . ..|+ .+..|...|...| +.++|+.+|++..+.| .++...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~-~--~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAAL-N--TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHT-T--TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred CCCcccCHHHHHHHHHHHH-c--CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 77554444 4444432 2 1333 7888888999999 9999999999999887 66777666777777655
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 012111 305 ---GMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-F--GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG--- 375 (471)
Q Consensus 305 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--- 375 (471)
+++++|...|+... . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 79999999999887 3 355666666666 3 46899999999999999876 6777888888877 55
Q ss_pred --CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 012111 376 --LIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LG 445 (471)
Q Consensus 376 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 445 (471)
++++|...|++.. .| +...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 9999999999988 43 67788888888776 3499999999999998764 3344455555553 45
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 012111 446 MTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~ 463 (471)
+.++|..++++..+.+..
T Consensus 373 d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHCCCH
Confidence 899999999998876643
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=3.2e-12 Score=113.81 Aligned_cols=223 Identities=9% Similarity=0.019 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAYG-------NSGNI-------EKMEKWYNEFNLMGVKADIQTLNILTKSYG 302 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (471)
++|..+|++..+.. +.+...|..++..+. ..|++ ++|..+|++....-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555555555442 334444555544443 23553 566666666654211334445666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 012111 303 RAGMYDKMRSVMDFMQKRFFFPTVV-TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS-KAGLIMKV 380 (471)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a 380 (471)
+.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666653211 222 56666666666666666666666666543 223333333222211 25667777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVP--DNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666655443 56666666666666677777777777766642 333 3456666666666667777777777777
Q ss_pred HHhhhcC
Q 012111 458 IAMKENS 464 (471)
Q Consensus 458 ~~~~~~~ 464 (471)
++..|+.
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 7666653
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=3.2e-11 Score=117.20 Aligned_cols=385 Identities=10% Similarity=0.081 Sum_probs=236.7
Q ss_pred CCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCC---HHHHHHHHHHHHhCC-CCCCHH
Q 012111 75 NLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDG-LKPSVD 150 (471)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~~~~~ 150 (471)
+.+...+...++.+.+.+.++.|..+|+.+... +|.+...|...+..-.+.++ ++.+..+|++..... ..|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 345566666676666667777777777777765 35666667777776667676 777777777776653 135666
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHhhcCCCC-CCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 012111 151 VYTALVSAYGQSGLL--------DEAFSTINDMKSVSDC-KPD-VYTYSILIKSCTK---------FHRFDLIEKILAEM 211 (471)
Q Consensus 151 ~~~~li~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 211 (471)
.|...+....+.++. +.+.++|+.....-|. .++ ...|...+..... .++++.+.++|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 766666554444332 2334566665543444 333 3456555544321 22345555555555
Q ss_pred HHCCCCCCHHH---------------------------------------------------------------------
Q 012111 212 SYLGIECSAVT--------------------------------------------------------------------- 222 (471)
Q Consensus 212 ~~~g~~~~~~~--------------------------------------------------------------------- 222 (471)
+......-..+
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 53211100111
Q ss_pred ----HHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCC
Q 012111 223 ----YNTIIDGYGKAK-------KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKAD 290 (471)
Q Consensus 223 ----~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 290 (471)
|...+..--..+ ..+.+..+|++++.. ++-....|...+..+...|+.++|. .+|+..... ++.+
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 111111111111 012233445555444 2334555666666666778888886 888888753 3556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---------FPT------------VVTYNIVIETFGKAGHIEKMEEYF 349 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~ 349 (471)
...+...+....+.|+++.|..+|+.+.+... .|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66677788888888999999999888775310 121 235777777777788889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 350 KKMKHRGMKPNSITYCSLVSAYSKA-GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 428 (471)
Q Consensus 350 ~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 428 (471)
.+.++.........|...+..-.+. ++.+.|.++|+...+.-+ -+...+...+......|+.+.|..+|++.......
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9888751112334444333333344 458899999988877633 36667778888888889999999999988875321
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 429 P--DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 429 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
+ ....|...+..-.+.|+.+.+.++.+++.+..|+.+
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 1 345777777877888999999999999998888754
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=8.9e-14 Score=129.50 Aligned_cols=279 Identities=10% Similarity=-0.029 Sum_probs=155.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 012111 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYL----GI-ECSAVT 222 (471)
Q Consensus 152 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~ 222 (471)
+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++..+. +. +....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666666666666666665521 1122 34555555566666666666666555432 10 112334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (471)
+..+...|...|++++|...+++..+......+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-------------------------------RLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-------------------------------hHHHHHHHHHHHHHHH
Confidence 445555555555555555555554332100000 0111223444444444
Q ss_pred HcCC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 012111 303 RAGM-----------------YDKMRSVMDFMQKR----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KP 359 (471)
Q Consensus 303 ~~~~-----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p 359 (471)
..|+ +++|...+.+..+. +..+ ....+..+...+...|++++|...+++..+... ..
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 4444 45555444443221 1111 223566666777777777777777777654310 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 012111 360 N----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKER----H 426 (471)
Q Consensus 360 ~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 426 (471)
+ ..++..+...+...|++++|...+++..+.... ....++..+...|...|++++|...+++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 236677777788888888888888776543211 12456777888888888888888888877642 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 427 CVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 427 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..+ ...++..+...|...|++++|.+.++++++....
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 111 1346667778888888888888888888776543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.9e-14 Score=130.88 Aligned_cols=303 Identities=14% Similarity=0.050 Sum_probs=157.4
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC---CCCCC-
Q 012111 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS----VDVYTALVSAYGQSGLLDEAFSTINDMKSV---SDCKP- 183 (471)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~- 183 (471)
.....+......+...|++++|...|+...+.+.. + ..++..+...+...|++++|...+++.... .+..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34445556666666677777777777766665322 2 245566666666667777776666665431 11011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 012111 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 262 (471)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 262 (471)
...++..+...+...|++++|...+++..+... ..+. .....++..+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~l 133 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------------VGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------------------------cchHHHHHHH
Confidence 123344455555555555555555554433210 0010 0002234444
Q ss_pred HHHHHhcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012111 263 ISAYGNSGN--------------------IEKMEKWYNEFNLM----GV-KADIQTLNILTKSYGRAGMYDKMRSVMDFM 317 (471)
Q Consensus 263 ~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (471)
...+...|+ +++|...+.+.... +. .....++..+...+...|++++|...++..
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444444 44444444443221 10 111234555555666666666666666554
Q ss_pred HhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 318 QKRFF-FPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KPN----SITYCSLVSAYSKAGLIMKVDSILRQV 387 (471)
Q Consensus 318 ~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 387 (471)
.+... .++ ...+..+...+...|++++|...+++...... ..+ ..++..+...+...|++++|...+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 43210 011 22556666667777777777777776654210 011 445666777777777777777777766
Q ss_pred HhCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 012111 388 ENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVP-DNITFATMIQAYNALGMT 447 (471)
Q Consensus 388 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 447 (471)
.+.... ....++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 532111 11445667777777778888888777766532 1111 234455566666666654
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.3e-13 Score=126.34 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCC-CC
Q 012111 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS----AVTYNTIIDGYGKAKKFEEMESSFSAMVESG---GCH-PD 255 (471)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~ 255 (471)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++..+.. +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444455555566666666666666665542 222 2345566666666677777766666553321 011 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 012111 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KAD----IQTLNILTKSYGRAGM--------------------YDKM 310 (471)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a 310 (471)
...+..+...+...|++++|...+++...... ..+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566667777777888887777776644210 011 4477888888999999 9999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 012111 311 RSVMDFMQKR----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KPN----SITYCSLVSAYSKAGLIMKV 380 (471)
Q Consensus 311 ~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 380 (471)
...+....+. +..+ ....+..+...+...|++++|...+++...... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9988876542 1111 234678888899999999999999998875410 112 34788889999999999999
Q ss_pred HHHHHHHHhCCCC----c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012111 381 DSILRQVENSDVI----L-DTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVP-DNITFATMIQAYNALGMTEAA 450 (471)
Q Consensus 381 ~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A 450 (471)
...+++..+.... + ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987643211 1 1557888999999999999999999988753 1111 155777888999999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 012111 451 QNLENKMIAMKENSG 465 (471)
Q Consensus 451 ~~~~~~m~~~~~~~~ 465 (471)
.+.++++++..+..+
T Consensus 327 ~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 327 MHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988866543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=1.2e-13 Score=124.48 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----cCH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDT 396 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~ 396 (471)
..+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+.... ...
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 35666677777788888888887776543 100 01236777788888888888888888876642111 114
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 397 PFFNCIISAYGQAGDVEKMGELFLTMKER----HCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
.++..+...+...|++++|...++++.+. +-.+ ...++..+...+...|++++|...++++++..+..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 56778888899999999999999887643 1111 134677788899999999999999999988776543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.5e-12 Score=106.41 Aligned_cols=171 Identities=15% Similarity=0.053 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012111 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 369 (471)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 369 (471)
+..+|..+...|...|++++|...|++..+..+. +...+..+...+...|++++|...+....... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556666666666666777776666666665332 45566666667777777777777777666653 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449 (471)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 449 (471)
.+...++++.+...+....+..+. +...+..+..++...|++++|++.|++..+.. +-+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 677777777777777776665544 56667777777777777777777777776642 2356667777777777777777
Q ss_pred HHHHHHHHHHhhhcC
Q 012111 450 AQNLENKMIAMKENS 464 (471)
Q Consensus 450 A~~~~~~m~~~~~~~ 464 (471)
|.+.++++++.+|+.
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 777777777776653
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=2.2e-13 Score=122.85 Aligned_cols=275 Identities=12% Similarity=0.002 Sum_probs=151.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCccCC----hhHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CCHHHHH
Q 012111 83 EALDEAIKQKKWQLALKIFGLLRQQQWYQAR----CQTFTKLMVMLGKCKQPEQASLLFEVMLSD----GLK-PSVDVYT 153 (471)
Q Consensus 83 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~ 153 (471)
..-..+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|...++...+. +.. ....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33455667888999999998888764 333 356778888888888888888888876542 111 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 012111 154 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSCTKFHR--------------------FDLIEKILA 209 (471)
Q Consensus 154 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 209 (471)
.+...+...|++++|...+++......-.++ ..++..+...+...|+ ++.|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 7777888888888888887776542111112 2356666666666666 666666665
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 210 EMSYL----GI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 210 ~~~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
+.... +. .....++..+...+...|++++|...+++..+.....++.
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------- 219 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------------------------- 219 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH----------------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh----------------------------
Confidence 54321 10 0112344445555555555555555555543221000110
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 012111 285 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----FFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR---- 355 (471)
Q Consensus 285 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 355 (471)
.....++..+...+...|++++|...++...+.. ..+ ...++..+...+...|++++|...+++....
T Consensus 220 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 220 ---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0011234444444455555555555444433210 000 1334555556666666666666666655432
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 356 GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENS 390 (471)
Q Consensus 356 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 390 (471)
+..+ ...++..+...+...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1000 1335566666677777777777777666653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=9.5e-13 Score=121.26 Aligned_cols=237 Identities=11% Similarity=-0.044 Sum_probs=171.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHHHHH
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--V----KADIQTLN 295 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 295 (471)
....+...|++++|...|++..+.....++ ..++..+...+...|+++.|...+.+..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667788888888888888653111222 3567778888888889888888888875431 1 11235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GM-KPNSITYC 365 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 365 (471)
.+...|...|++++|...+....+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999988877643111 11 236778888999999999999999988762 22 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 012111 366 SLVSAYSKAGLIMKVDSILRQVENS----DVILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVPD-NITFATM 437 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 437 (471)
.+...+...|++++|...+++..+. +-......+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999887643 111122335677888888898 77777777766 23333 3466678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 438 IQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
...|...|++++|.+.++++++......
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999998876543
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=4.1e-13 Score=124.98 Aligned_cols=282 Identities=12% Similarity=0.031 Sum_probs=180.9
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcC---CC-CCC
Q 012111 112 ARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSV----DVYTALVSAYGQSGLLDEAFSTINDMKSV---SD-CKP 183 (471)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~-~~~ 183 (471)
.....+..+...+...|++++|...|+++.+.+.. +. .+|..+...|...|++++|+..+++.... .+ ...
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34456667888899999999999999999987433 33 57888999999999999999999988652 11 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHH
Q 012111 184 DVYTYSILIKSCTKFHRFDLIEKILAEMSYL----G-IECSAVTYNTIIDGYGKAKK-----------------FEEMES 241 (471)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 241 (471)
...++..+...+...|++++|...+++..+. + .+....++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3456888888999999999999999987654 1 11224466677777777777 666666
Q ss_pred HHHHHHHcC---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012111 242 SFSAMVESG---GC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 317 (471)
Q Consensus 242 ~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (471)
.+++..+.. +. ......+..+...+...|++++|...+++...... ..++
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~----------- 258 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR---------------EFGD----------- 258 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTC-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---------------hcCC-----------
Confidence 666543310 00 00112344444444445555555544444432100 0000
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 318 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM--K---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 318 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
.......+..+...|...|++++|...+++...... . ....++..+...+...|++++|...+++..+...
T Consensus 259 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 259 ----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 000122556666677777777777777776654310 0 1145667777778888888888888777654211
Q ss_pred -----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 393 -----ILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 393 -----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.....++..+..+|...|++++|...+++..+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11234677778888888888888888888775
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=8e-13 Score=124.93 Aligned_cols=215 Identities=8% Similarity=-0.020 Sum_probs=163.3
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 169 (471)
..++++|++.++...... +.+...+..+...+...|++ ++|...|++..+.... +...|..+..+|...|++++|+
T Consensus 81 ~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 445777888888776654 55778888888889999999 9999999988876433 6788888888898999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------
Q 012111 170 STINDMKSVSDCKPDVYTYSILIKSCTKF---------HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA------- 233 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~------- 233 (471)
+.|++..+. .|+...+..+...+... |++++|.+.+++..+.. +-+...|..+..+|...
T Consensus 158 ~~~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 158 TCFSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccc
Confidence 999888863 46677788888888888 88888888888887764 44677777788888777
Q ss_pred -CCHHHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 012111 234 -KKFEEMESSFSAMVESGGCH---PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 309 (471)
Q Consensus 234 -~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 309 (471)
|++++|++.|++..+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++
T Consensus 234 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877653 2 366777777788888888888888887776654 4455666777777777777777
Q ss_pred HHHHHH
Q 012111 310 MRSVMD 315 (471)
Q Consensus 310 a~~~~~ 315 (471)
|...+.
T Consensus 311 Ai~~~~ 316 (474)
T 4abn_A 311 LLESKG 316 (474)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 766543
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.3e-11 Score=109.86 Aligned_cols=218 Identities=10% Similarity=-0.040 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhhccCccCChhHHHHHHHHHh-------cCCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 95 QLALKIFGLLRQQQWYQARCQTFTKLMVMLG-------KCKQP-------EQASLLFEVMLSDGLKPSVDVYTALVSAYG 160 (471)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (471)
++|+.+|+.+.... |.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 68889999998875 677888888888775 35775 888999988887312236678888888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHH
Q 012111 161 QSGLLDEAFSTINDMKSVSDCKPD-VY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG-KAKKFE 237 (471)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 237 (471)
..|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 889999999999888863 343 33 67777888888888888888888887664 334444443333322 257788
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 012111 238 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKA--DIQTLNILTKSYGRAGMYDKMRSVM 314 (471)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 314 (471)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887776653 3456667777777777777777777777777652 233 3556666667777777777777777
Q ss_pred HHHHhC
Q 012111 315 DFMQKR 320 (471)
Q Consensus 315 ~~~~~~ 320 (471)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=5.3e-12 Score=103.11 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335 (471)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 335 (471)
...|..+...+...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555443 334555555555555556666665555555544222 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 415 (471)
+...++++.|...+.+..... +-+...+..+...+...|++++|.+.|++..+.++. +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 666666666666666665542 234556666666666667777777666666665544 566666667777777777777
Q ss_pred HHHHHHHHh
Q 012111 416 GELFLTMKE 424 (471)
Q Consensus 416 ~~~~~~~~~ 424 (471)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776665
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=4.6e-12 Score=116.67 Aligned_cols=228 Identities=13% Similarity=0.031 Sum_probs=131.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC-----HHHHHHHH
Q 012111 194 SCTKFHRFDLIEKILAEMSYL----GIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD-----IFTLNSMI 263 (471)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~ 263 (471)
.+...|++++|...+++..+. +-.+ ...++..+...|...|+++.|...+.+..+...-.++ ..++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344555555555555555432 1011 1344555556666666666666666555432111111 23555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHH
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGV-KAD----IQTLNILTKSYGRAGMYDKMRSVMDFMQKR----FF-FPTVVTYNIVI 333 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li 333 (471)
..|...|++++|...+++...... ..+ ..++..+..+|...|++++|...+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 666667777777766666543210 011 235666677777777777777777766551 22 22345667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCc-CHHHHHHHHHH
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHR----GMKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVIL-DTPFFNCIISA 405 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 405 (471)
..+...|++++|...+++.... +-+.....+..+...+...|+ +++|..+++.. +..+ ....+..+...
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 7777778888887777776543 111112234556667777777 56666666554 2222 23456677888
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 012111 406 YGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~ 424 (471)
|...|++++|...|++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888888887764
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.6e-12 Score=122.94 Aligned_cols=212 Identities=8% Similarity=-0.064 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279 (471)
Q Consensus 201 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (471)
++.+.+.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555665554432 33566666666777777777 77777777666653 334566666666666677777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 012111 280 NEFNLMGVKADIQTLNILTKSYGRA---------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA--------GHI 342 (471)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 342 (471)
++..+. .|+...+..+...+... |++++|...+++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 666654 34455666666666666 6666666666665554322 445555555555555 556
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMK--PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 419 (471)
++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+..+. +...+..+..++...|++++|++.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666655554210 24555555555555666666666666555554433 4445555555555555555555443
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=6.6e-11 Score=108.46 Aligned_cols=302 Identities=10% Similarity=0.003 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HH
Q 012111 152 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSA----VT 222 (471)
Q Consensus 152 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~----~~ 222 (471)
+......+...|++++|...+++...... ..+. .+++.+...+...|+++.|.+.+++...... ..+. .+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566778889999998888776332 1222 2455666677788888888888887754311 1122 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHH
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAMVESG---GCH--P-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK----ADIQ 292 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 292 (471)
+..+...+...|++++|...+++..+.. +.. | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5566777888888888888888776431 111 2 2345566777788888888888888877653211 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYN----IVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSIT 363 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~ 363 (471)
++..+...+...|++++|...++........++ ..... ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566777778888888888888877754321111 11111 22234667788888888887766542211 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENS----DVILDT-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..... +. .-.+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHH
Confidence 566677777888888888887776532 222122 255566677777888888888887776421 00 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 439 QAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
..+...| +....+++.+....+
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHcc--HHHHHHHHHHHhCCC
Confidence 3444555 566667776666555
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.3e-12 Score=116.40 Aligned_cols=244 Identities=17% Similarity=0.177 Sum_probs=172.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------G 286 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 286 (471)
+..++..+...+...|++++|..+++++.+.. ........+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46778889999999999999999999987630 02334567888899999999999999999998754 2
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 012111 287 -VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR------FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--- 355 (471)
Q Consensus 287 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 355 (471)
.+....++..+...|...|++++|...++.+.+. +..| ....+..+...+...|++++|..+++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1334567888899999999999999999988764 2222 3456788888999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCcCH-------HHHHHHHHHHHhcCCHHHHHH
Q 012111 356 ---GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSD-------VILDT-------PFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 356 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 417 (471)
+..| ...++..+...+...|++++|...++++.+.. ..+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 34578888999999999999999999887531 11111 122223333444555666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 418 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.++..... .+.+..++..+..+|.+.|++++|.++++++++..+.
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66666543 1234567888899999999999999999999988764
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.5e-11 Score=112.88 Aligned_cols=234 Identities=12% Similarity=0.033 Sum_probs=168.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C---C-CCHHHH
Q 012111 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--V---K-ADIQTL 294 (471)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 294 (471)
.....+...|++++|...|++..+.....++ ...+..+...|...|+++.|...+.+..... . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3445567788999999988887654211222 4567778888888999999988888875421 0 1 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 012111 295 NILTKSYGRAGMYDKMRSVMDFMQKR----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKH-----RGMKPNSITY 364 (471)
Q Consensus 295 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 364 (471)
+.+...|...|++++|...+....+. +..+ ...++..+...|...|++++|...+++... .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888889999999999988876652 1111 234677788889999999999999998876 32 2236778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 012111 365 CSLVSAYSKAGLIMKVDSILRQVENSDV----ILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVPD-NITFAT 436 (471)
Q Consensus 365 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ 436 (471)
..+...+.+.|++++|...+++..+... ......+..+...+...|+ +.+|+..+++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8899999999999999999998875321 1123345666666777788 77777777763 22333 345567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 437 MIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
+...|...|++++|.+.++++++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=3.7e-13 Score=120.00 Aligned_cols=246 Identities=15% Similarity=0.100 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 012111 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVS------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL------GI 216 (471)
Q Consensus 149 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~ 216 (471)
..++..+...+...|++++|+.+|+++.+.. .......++..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455555566666666666666666555410 11122334445555555555555555555554432 11
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 217 -ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 295 (471)
Q Consensus 217 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (471)
+....++..+...|...|++++|...++++.+..... .....+.....+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----------------------------~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-----------------------------LGKDHPDVAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-----------------------------cCCCChHHHHHHH
Confidence 1123344444445555555555555554443320000 0000011223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQKR------FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-------GMKPN- 360 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~- 360 (471)
.+...+...|++++|..+++.+.+. +..| ....+..+...+...|++++|...++++.+. ...+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4445555555555555555544332 1111 1234555556666666666666666665532 01111
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 361 ------SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 361 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
...+..+...+...+.+.++...++......+. ...++..+..+|...|++++|.++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111222223333445555555566655544322 556778888888888888888888887765
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.6e-11 Score=100.05 Aligned_cols=171 Identities=13% Similarity=0.061 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012111 292 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371 (471)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 371 (471)
..+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455566667777777777777777665432 256677777778888888888888888877653 34667778888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 372 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 451 (471)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 451 (471)
...|++++|.+.++.+.+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888776544 67788888888999999999999999888752 346778888889999999999999
Q ss_pred HHHHHHHHhhhcCCC
Q 012111 452 NLENKMIAMKENSGK 466 (471)
Q Consensus 452 ~~~~~m~~~~~~~~~ 466 (471)
+.++++++..|+...
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999998887654
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=7.8e-10 Score=107.56 Aligned_cols=362 Identities=9% Similarity=0.012 Sum_probs=242.3
Q ss_pred HHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 012111 95 QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL---LDEAFST 171 (471)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~ 171 (471)
.+.+..|+.....+ +-|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. ++.+..+
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34555666666665 779999999999999999999999999999987 45578889999998888888 9999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHHc--------
Q 012111 172 INDMKSVSDCKPDVYTYSILIKSCTKFHRF--------DLIEKILAEMSY-LGI-EC-SAVTYNTIIDGYGK-------- 232 (471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~-------- 232 (471)
|++........|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999987322248999998888876665543 345577776553 466 44 45677777765432
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHH----------HhcCCHHHH-----------------------
Q 012111 233 -AKKFEEMESSFSAMVESGGCHPDIFTLN---SMISAY----------GNSGNIEKM----------------------- 275 (471)
Q Consensus 233 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~----------~~~~~~~~a----------------------- 275 (471)
.++++.+..+|+.++... ...-..+|. .+.... ....+++.|
T Consensus 206 eq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 334667777887776421 111112221 111110 000011112
Q ss_pred --------------------------------------------HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 012111 276 --------------------------------------------EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 311 (471)
Q Consensus 276 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 311 (471)
..+|++.... ++.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 2223333222 1233444455555566778888886
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHH
Q 012111 312 -SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---------MKPN------------SITYCSLVS 369 (471)
Q Consensus 312 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~li~ 369 (471)
.+|+..... ++.+...|-..+....+.|++++|.++|+++.... -.|+ ..+|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 899888765 33456667777888888999999999999888641 0132 346777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012111 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 448 (471)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 448 (471)
...+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888899999999999988761122334444333333344 4589999999998876 4446677778888888899999
Q ss_pred HHHHHHHHHHHhhhc
Q 012111 449 AAQNLENKMIAMKEN 463 (471)
Q Consensus 449 ~A~~~~~~m~~~~~~ 463 (471)
.|+.+|++++...++
T Consensus 522 ~AR~lferal~~~~~ 536 (679)
T 4e6h_A 522 QVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHHHTTTSSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999887663
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=8.8e-11 Score=107.83 Aligned_cols=226 Identities=12% Similarity=0.007 Sum_probs=134.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHH
Q 012111 195 CTKFHRFDLIEKILAEMSYLGI-EC----SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-----DIFTLNSMIS 264 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~ 264 (471)
+...|+++.|...+++..+... .+ ...++..+...|...|+++.|...+++..+...-.+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4455666666666666554310 01 134555666666666676666666666544211111 1345566666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 012111 265 AYGNSGNIEKMEKWYNEFNLM----GVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----RFFFPTVVTYNIVIE 334 (471)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~ 334 (471)
.|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++..+ .... ...++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 777777777777777665442 111 1123566677777777777777777776665 3222 2556777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCc-CHHHHHHHHHHH
Q 012111 335 TFGKAGHIEKMEEYFKKMKHRGM---KP-NSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVIL-DTPFFNCIISAY 406 (471)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~~~---~p-~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 406 (471)
.+...|++++|...+++...... .+ ....+..+...+...++ +.+|...++. .+..+ ....+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 88888888888888887765421 12 23345555556666677 5666666654 22222 234566778888
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 012111 407 GQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~ 424 (471)
...|++++|...|++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887764
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=3e-10 Score=104.05 Aligned_cols=267 Identities=10% Similarity=0.039 Sum_probs=144.7
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHH
Q 012111 123 MLGKCKQPEQASLLFEVMLSDGLKPSVD----VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKS 194 (471)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~ 194 (471)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++......-..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344455555555555544432111111 3344444555555555555555554331000111 1223444555
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---CCCHHHHHHHHH
Q 012111 195 CTKFHRFDLIEKILAEMSYL----GIE--C-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC---HPDIFTLNSMIS 264 (471)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~ 264 (471)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+...- ......+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 55666666666666555432 211 1 2334455666666777777777777766543210 012345666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 012111 265 AYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLN----ILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIET 335 (471)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 335 (471)
.+...|++++|...+++.......+ ...... ..+..+...|++++|...+.........+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 7777777777777777664421111 111111 22334667788888888777765543221 12245566777
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 336 FGKAGHIEKMEEYFKKMKHR----GMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 389 (471)
+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888888888877543 211122 2556667778888999999988887764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=9.6e-11 Score=99.22 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=156.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 253 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 332 (471)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 332 (471)
..|...+......+...|++++|...|++.......++...+..+..++...|++++|...++...+.... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34567888889999999999999999999988763377888888999999999999999999999886443 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHH
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHRGMKPNS-------ITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIIS 404 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 404 (471)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.++++.+.++.. +...+..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998863 2244 457788888899999999999999998864320 2466777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
+|...| ..+++++...+ ..+...|.... ....+.+++|...++++++..|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 776544 34456655542 23455554443 3445678999999999999988753
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=1.2e-10 Score=94.87 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 258 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 337 (471)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (471)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444455555555555555555554332 33445555555555555666666655555554422 24455555566666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 417 (471)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665542 334556666666666666666666666666655433 45666666666777777777777
Q ss_pred HHHHHHh
Q 012111 418 LFLTMKE 424 (471)
Q Consensus 418 ~~~~~~~ 424 (471)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=3.6e-11 Score=118.29 Aligned_cols=167 Identities=8% Similarity=0.034 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 370 (471)
..+++.|...|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555555555555555555555544222 34455555555666666666666666555542 1235555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 012111 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEA 449 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 449 (471)
+...|++++|.+.|++..+.++. +...|+.+..+|...|++++|++.|++..+. .| +...+..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666555444 5556666666666666666666666666553 33 34555566666666666666
Q ss_pred HHHHHHHHHHhhh
Q 012111 450 AQNLENKMIAMKE 462 (471)
Q Consensus 450 A~~~~~~m~~~~~ 462 (471)
|.+.++++++..+
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 6666666655544
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=7.1e-11 Score=116.21 Aligned_cols=164 Identities=11% Similarity=0.008 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 335 (471)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 335 (471)
...|+.|..++.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445555555555555555555555554432 333445555555555555555555555555544222 34455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 415 (471)
|...|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.++. +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 666666666666666665542 224556666666666666666666666666655544 555666666666666666666
Q ss_pred HHHHHHHH
Q 012111 416 GELFLTMK 423 (471)
Q Consensus 416 ~~~~~~~~ 423 (471)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=3.7e-11 Score=105.24 Aligned_cols=229 Identities=17% Similarity=0.163 Sum_probs=157.4
Q ss_pred HccCCHHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 012111 231 GKAKKFEEMESSFSAMVESG------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GV-KADIQTLNIL 297 (471)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 297 (471)
...|++++|+..|++..+.. ..+....++..+...+...|++++|...++++... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45678788887777765421 11224567888999999999999999999998754 21 2345678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHH
Q 012111 298 TKSYGRAGMYDKMRSVMDFMQKRF------F-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR------GMKP-NSIT 363 (471)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 363 (471)
...|...|++++|...+.+..+.. . +.....+..+...+...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999887641 1 223557888889999999999999999998865 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCc-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCC
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENS-------DVIL-DTPFFNCIISAYGQAGD------VEKMGELFLTMKERHCVP 429 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~p 429 (471)
+..+...+...|++++|..+++++.+. ...+ ....+..+...+...+. +..+...++..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999988753 1111 22333333333333333 22222222222111 112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012111 430 DNITFATMIQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
...++..+...|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778889999999999999999998864
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1e-09 Score=92.84 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 299 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 299 (471)
+..+......+...|++++|...|++..+.. ..++...+..+..++...|++++|...+++..... +.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3444455555555555555555555554442 11344444445555555555555555555555432 223444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 012111 300 SYGRAGMYDKMRSVMDFMQKRFFFPTV-------VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVS 369 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 369 (471)
++...|++++|...++...+.... +. ..|..+...+...|++++|...|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 555555555555555555543221 22 23555555566666777777777666654 333 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
++...| ..+++.+...+.. +...|.... ....+.+++|+..|++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 554332 3334444443322 333333332 22345577777777777763
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=9.7e-11 Score=102.54 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-----C
Q 012111 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSD------GL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-----D 180 (471)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~ 180 (471)
...++..+...+...|++++|...+++..+. +. +....++..+..++...|++++|++.|++..... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666777777777777777777766543 11 1123456666666666666666666666655420 0
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 181 -CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL------G-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 181 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
.+....++..+...+...|++++|..++++..+. + .+....++..+...|...|++++|...++++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0112334444555555555555555555554432 0 01113344444444445555555555544443
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=8.3e-10 Score=84.46 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.++. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 45566777777888888888888877653 335667777788888888888888888887776544 5677778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 408 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..|++++|.++++++.+.. +.+...+..+...+...|++++|...++++++..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888887752 335777778888888899999999999888887764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=5e-10 Score=98.68 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=122.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHH
Q 012111 265 AYGNSGNIEKMEKWYNEFNLM----GVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---FP--TVVTYNIVIE 334 (471)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~ 334 (471)
.|...|++++|...|.+.... +-+++ ..+|+.+..+|...|++++|...+++..+... .+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777777665432 21111 34666677777777777777777766554211 00 1245677777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH------HHHHHH
Q 012111 335 TFGKA-GHIEKMEEYFKKMKHRGMK-PN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT------PFFNCI 402 (471)
Q Consensus 335 ~~~~~-g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 402 (471)
.|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|+++.+..+.... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 8888888888877653110 01 345777788888888888888888888776544222 146667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHHhhhc
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNI------TFATMIQAYN--ALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..++...|++++|+..|++..+. .|+.. .+..++.++. ..+++++|...+++++..+|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 77788888888888888887753 33321 2334455554 346688888877776655553
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=7e-09 Score=89.66 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012111 260 NSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (471)
..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444444444444444433221 12333444444444444444444444444443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=6.2e-09 Score=89.97 Aligned_cols=243 Identities=7% Similarity=-0.053 Sum_probs=167.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (471)
-.|.+..++.-. .+............+.++|...|++.... .-.|....+..+...+ ..+ |+
T Consensus 25 y~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 25 YTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp TTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHHh-ccc----HH
Confidence 346666666522 22211222334444567777777765310 1234444444444433 322 67
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012111 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 355 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (471)
..+++....+ .++..++..+..++...|++++|++++......+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888877655 56667777889999999999999999999877654 235678888899999999999999999999885
Q ss_pred CCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 012111 356 GMKP-----NSITYCSLVSA--YSKAG--LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER- 425 (471)
Q Consensus 356 ~~~p-----~~~~~~~li~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 425 (471)
.| +..+...++.+ ....| +.++|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56 35666666666 33334 8999999999997764 34233344444899999999999999976642
Q ss_pred ----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 426 ----HC----VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 426 ----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+. +-|+.++..+|......|+ +|.++++++.+..|+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 01 3356677677777777887 8999999999988865
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=3.7e-09 Score=91.46 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-HHH
Q 012111 254 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT-VVT 328 (471)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~ 328 (471)
.+...+..+...+.+.|++++|...|+++.... +.+ ...+..+..+|.+.|++++|...|+.+.+..+. |. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345666667777778888888888888877653 223 566677777777888888888888777765321 12 345
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 012111 329 YNIVIETFGK--------AGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 399 (471)
Q Consensus 329 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 399 (471)
+..+..++.. .|++++|...|+++.+.. |+ ......+.. +..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 5566666666 777777777777777652 32 112211100 0000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhhhcC
Q 012111 400 NCIISAYGQAGDVEKMGELFLTMKERHCVPD----NITFATMIQAYNAL----------GMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 400 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~ 464 (471)
..+...|...|++++|+..|+++.+. .|+ ...+..+..+|... |++++|...++++++..|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 45566677777777777777777664 233 34555666666655 77777777777777777654
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=3.5e-07 Score=86.30 Aligned_cols=347 Identities=12% Similarity=0.002 Sum_probs=222.2
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCC-HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcC
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ-PEQASLLFEVMLSD-GL-KPSVDVYTALVSAYG----QSG 163 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~~ 163 (471)
.|+++.+.++|+..... .|+...|...+....+.+. .+....+|+..... |. ..+...|...+..+. ..+
T Consensus 27 ~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 38899999999999985 4699999888888777663 45677788877654 43 337788888887654 246
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012111 164 LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-------------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 230 (471)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 230 (471)
+.+.+..+|++... .+...-...|......-.. .+.+..|..+++.+...--..+...|...+..-
T Consensus 104 ~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 RIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 78889999999987 2222122233322221111 112233444444443210011344565555543
Q ss_pred HccC--C-----HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012111 231 GKAK--K-----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 303 (471)
Q Consensus 231 ~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (471)
...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 3221 1 345678899988763 556778888888889999999999999999876 33332222 2332
Q ss_pred cCCHHHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012111 304 AGMYDKMRSVMDFMQKRF---------F---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 371 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 371 (471)
..+.++. ++.+.+.- . ......|...+....+.++.+.|..+|++. .. ...+...|...+..-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHH
Confidence 2222222 22222210 0 011245666677777788899999999999 32 123455554333332
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 372 SKA-GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 450 (471)
Q Consensus 372 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 450 (471)
... ++.+.|..+|+...+..+. +...+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+
T Consensus 330 ~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 233 3699999999998875433 45566777888888999999999999983 2577888888877888999999
Q ss_pred HHHHHHHHHh
Q 012111 451 QNLENKMIAM 460 (471)
Q Consensus 451 ~~~~~~m~~~ 460 (471)
.++++++...
T Consensus 404 r~v~~~~~~~ 413 (493)
T 2uy1_A 404 RELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988863
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.8e-09 Score=88.64 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHH----------------HHHHHhcCCCHHHHHHHHHHHHh
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTK----------------LMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
+.+......+...|++++|+..|+.+.+.. |.+...+.. +..++.+.|++++|...|+...+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555566778999999999999998864 444555555 45555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 143 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 143 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
.... +...+..+..++...|++++|+..|++..+
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4322 444555555555555555555555555544
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=2.8e-09 Score=93.83 Aligned_cols=210 Identities=10% Similarity=0.063 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---GCHP-DIFTLNSMISAYGNSGNIEKM 275 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a 275 (471)
++++|...+++. ...|...|++++|.+.|.+..+.. +..+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777766 345677889999998888776531 1111 145788888899999999999
Q ss_pred HHHHHHHHhCCC---CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 012111 276 EKWYNEFNLMGV---KA--DIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFP-T----VVTYNIVIETFGKAGHIEK 344 (471)
Q Consensus 276 ~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 344 (471)
+..+++...... .+ ...++..+..+|... |++++|...|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 998888755311 11 135778888889986 99999999998876642111 1 3467888899999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHH--hcCCH
Q 012111 345 MEEYFKKMKHRGMKPNS------ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD----TPFFNCIISAYG--QAGDV 412 (471)
Q Consensus 345 a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~g~~ 412 (471)
|+..|++.......... ..|..+..++...|++++|...+++..+..+... ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999886432221 2567788889999999999999999886543211 123445566664 45678
Q ss_pred HHHHHHHHHHHh
Q 012111 413 EKMGELFLTMKE 424 (471)
Q Consensus 413 ~~a~~~~~~~~~ 424 (471)
++|+..|+.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888877654
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=1.1e-07 Score=83.01 Aligned_cols=227 Identities=13% Similarity=0.050 Sum_probs=158.5
Q ss_pred HHHHHHhhcH-HHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 012111 85 LDEAIKQKKW-QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAY-- 159 (471)
Q Consensus 85 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-- 159 (471)
+++..+.|.+ ++|+++++.+...+ |.+..+|+.-..++...+ ++++++++++.+...+.+ +..+|+.-...+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 4444455554 68999999999875 666778888888888888 999999999999987655 666777655554
Q ss_pred --Hhc---CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012111 160 --GQS---GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGK 232 (471)
Q Consensus 160 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 232 (471)
... +++++++.+++++.+. .+-+..+|+.-.-.+.+.+.++ ++++.++.+.+.. +-|...|+.-...+..
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 444 7888888888888873 2567777877777777778777 8888888888765 4477777766666666
Q ss_pred cCC------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 012111 233 AKK------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMG--VKADIQTLNILTKSYGR 303 (471)
Q Consensus 233 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~ 303 (471)
.+. ++++++.++.+.... +-|...|+.+...+.+.|+... +..+..++...+ -+.+...+..+..+|.+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 665 777777777777663 5566777777777766666333 444555544321 13455666666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 012111 304 AGMYDKMRSVMDFMQK 319 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~ 319 (471)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6666666666666654
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=1.2e-08 Score=77.88 Aligned_cols=128 Identities=17% Similarity=0.170 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 373 (471)
+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 34445555555666666666655554422 244455555666666666666666666665543 2345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 374 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.|++++|.++++.+.+..+. +...+..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66777777666666655433 455666666677777777777777776655
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=1.1e-08 Score=85.03 Aligned_cols=136 Identities=13% Similarity=-0.024 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
.+..+|.+.|++++|...|+...+..+. +...+..+...+...|++++|...|++..+.. +-+..++..+...+...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3667777777777777777777765433 56677777777777888888888888777753 235666777776665554
Q ss_pred C--HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 376 L--IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 437 (471)
Q Consensus 376 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 437 (471)
. ...+...++.+.. +.|....+..+..++...|++++|+..|++..+ +.|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3 3334444444432 222223334445556667888888888888876 46776544443
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=3.3e-08 Score=83.23 Aligned_cols=190 Identities=11% Similarity=-0.027 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 012111 256 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNI 331 (471)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 331 (471)
...+..+...+...|++++|...|+++...... + ....+..+..++.+.|++++|...|+.+.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677788888888888888888764311 1 1356777788888888888888888888776433221 13333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH--------------
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP-------------- 397 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------- 397 (471)
+..++...|.. .+ ..|..+...+...|+.++|...|+++.+..+. +..
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHH
Confidence 44444431100 00 00111111122233444444444444433222 111
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 398 ---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN----ITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 398 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
....+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|++++|.+.++.+....|...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1134567788999999999999999875 3442 4677888999999999999999999988777643
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=1.3e-09 Score=107.72 Aligned_cols=171 Identities=12% Similarity=-0.056 Sum_probs=93.9
Q ss_pred hcCCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 012111 125 GKCKQPEQASLLFEVML--------SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 196 (471)
Q Consensus 125 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (471)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|++.|++..+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 45566666666666655 221 2244555555666666666666666666655421 234455555566666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 197 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276 (471)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (471)
..|++++|.+.|++..+.. +-+...+..+..++.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665543 2245555566666666666666 66666665542 334555666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012111 277 KWYNEFNLMGVKADIQTLNILTKSYGR 303 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (471)
..|++..+.+ +.+...+..+..++..
T Consensus 555 ~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 555 RTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 6666655432 2223444444444433
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=1.9e-08 Score=86.96 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=132.9
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCC---hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CC-CHH
Q 012111 76 LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR---CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGL-KP-SVD 150 (471)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~ 150 (471)
..+..+......+.+.|++++|++.|+.+.+.. |.+ ..++..+..++.+.|++++|...|+...+... .+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445666677777888999999999999998864 444 67888889999999999999999999988632 11 245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012111 151 VYTALVSAYGQ--------SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 222 (471)
Q Consensus 151 ~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 222 (471)
.+..+..++.. .|++++|+..|+++....+- +......+.. +..+... ....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHH--------------HHHHHHH----HHHH
Confidence 67778888888 89999999999998874321 2222211110 0000000 0112
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC-
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNS----------GNIEKMEKWYNEFNLMGVKAD- 290 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~- 290 (471)
+..+...|.+.|++++|+..|+.+.+...-.+ ....+..+..+|... |++++|...|+++.+.. +-+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCCh
Confidence 44566667777777777777777766531111 234566666666654 77777777777776542 112
Q ss_pred --HHHHHHHHHHHHHcCCHH
Q 012111 291 --IQTLNILTKSYGRAGMYD 308 (471)
Q Consensus 291 --~~~~~~ll~~~~~~~~~~ 308 (471)
......+-..+...++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 233444444444444443
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=2.1e-07 Score=81.35 Aligned_cols=219 Identities=7% Similarity=-0.057 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----Hhc---C
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK--KFEEMESSFSAMVESGGCHPDIFTLNSMISAY----GNS---G 270 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 270 (471)
..++|+++++.++..+ +-+..+|+.--.++...| .++++++.++.+.... +.+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccC
Confidence 3356777777766654 335556666666666666 6777777777766653 33344454443333 333 5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------H
Q 012111 271 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------I 342 (471)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 342 (471)
++++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++...++.+.+..+. +...|+.-...+...++ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 5666666666665543 445555555555555555555 555555555554333 44455544444444443 4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 343 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELF 419 (471)
Q Consensus 343 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 419 (471)
+++++.+++++... +-|...|+.+...+.+.|+... +..+...+.+.+ -..+...+..+..+|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55555555555442 2244455555444544444222 333444333322 0114444555555555555555555555
Q ss_pred HHHHh
Q 012111 420 LTMKE 424 (471)
Q Consensus 420 ~~~~~ 424 (471)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=5.5e-09 Score=103.24 Aligned_cols=173 Identities=8% Similarity=-0.103 Sum_probs=133.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012111 267 GNSGNIEKMEKWYNEFN--------LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 338 (471)
Q Consensus 267 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (471)
...|++++|++.+++.. ... +.+...+..+...+...|++++|...|+.+.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888889998888887 332 455677888888888889999999988888776433 66778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 418 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 418 (471)
.|++++|...|++..+.. +-+...+..+..++...|++++ .+.|+++.+.++. +...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998888763 2356778888888888899988 8888888887665 777888888888899999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 012111 419 FLTMKERHCVPD-NITFATMIQAYNALGM 446 (471)
Q Consensus 419 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 446 (471)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8888763 565 4566666666655554
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=9.2e-09 Score=99.80 Aligned_cols=153 Identities=5% Similarity=-0.145 Sum_probs=110.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 269 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348 (471)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 348 (471)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888887653 456778888888888999999999999888876433 567788888888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 012111 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA---GDVEKMGELFLTMKER 425 (471)
Q Consensus 349 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 425 (471)
+++..+.. +.+...+..+..++...|++++|.+.+++..+..+. +...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 98888763 335778888888889999999999999888877654 677888888888888 8899999998888775
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=9.2e-08 Score=79.60 Aligned_cols=162 Identities=10% Similarity=-0.028 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG----HIEKMEEYFKKMKHRGMKPNSITYCS 366 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ 366 (471)
...+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|..+|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444432 23333334444433 3 4555555555554433 3344444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 367 LVSAYSK----AGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATM 437 (471)
Q Consensus 367 li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 437 (471)
|...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|+.+|++..+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444444 45555555555555544321 013444555555554 45555555555555543 1233344444
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHhh
Q 012111 438 IQAYNAL-G-----MTEAAQNLENKMIAMK 461 (471)
Q Consensus 438 ~~~~~~~-g-----~~~~A~~~~~~m~~~~ 461 (471)
...|... | +.++|.+++++..+.+
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444332 2 5555555555555544
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=6.9e-09 Score=83.71 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=81.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcC
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAG 375 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g 375 (471)
+...+...|++++|...++...+..+. +...+..+...+...|++++|...+++..... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 334444555555555555544433111 34445555555555555555555555544432 233222211111 11112
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLE 454 (471)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 454 (471)
....|...+++..+..+. +...+..+..++...|++++|...|+++.+..-.+ +...+..+...+...|+.++|...+
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 223355666666655443 55666666666667777777777776666542111 2445666666666677777776666
Q ss_pred HHHHH
Q 012111 455 NKMIA 459 (471)
Q Consensus 455 ~~m~~ 459 (471)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.3e-08 Score=89.16 Aligned_cols=163 Identities=12% Similarity=-0.026 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS-LVS 369 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~ 369 (471)
...+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...++++... .|+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 334444555555555555555555555544222 3445555555555666666666666555443 233322211 122
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 012111 370 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD---NITFATMIQAYNALGM 446 (471)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 446 (471)
.+...++.+.|...+++.....+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..++..+...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcCC
Confidence 244445555556666665555443 5555666666666666666666666666553 232 3455566666666666
Q ss_pred HHHHHHHHHHHHH
Q 012111 447 TEAAQNLENKMIA 459 (471)
Q Consensus 447 ~~~A~~~~~~m~~ 459 (471)
.++|...+++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 6666666655543
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=2.3e-07 Score=87.56 Aligned_cols=335 Identities=9% Similarity=-0.033 Sum_probs=206.2
Q ss_pred Hhh-cHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHH
Q 012111 90 KQK-KWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDE 167 (471)
Q Consensus 90 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~ 167 (471)
+.| +++.|..+|+.+...- |. |+++.+..+|+..... .|+...|...+....+.+. .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 3777888888877642 32 8899999999999985 5799999999888777663 456
Q ss_pred HHHHHHHhhcCCCC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------
Q 012111 168 AFSTINDMKSVSDC-KPDVYTYSILIKSCT----KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG----------- 231 (471)
Q Consensus 168 a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~----------- 231 (471)
...+|+.....-|. ..+...|...+..+. ..++.+.+.++|+..+.....--...|......-.
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 67788887764443 346677888877654 24578889999999987422111222322222111
Q ss_pred --ccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 232 --KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG--N-----IEKMEKWYNEFNLMGVKADIQTLNILTKSYG 302 (471)
Q Consensus 232 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (471)
..+.+..|..+++.+.... ...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1122334444454443211 0113345655555432221 1 345678898887753 667888888899999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHH
Q 012111 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---------MKP---NSITYCSLVSA 370 (471)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~li~~ 370 (471)
+.|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.- ..+ ....|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999987 33333332 22222111121 22222210 001 12456777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012111 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 449 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 449 (471)
..+.++.+.|..+|+++ +. ...+..+|......-.. .++.+.|..+|+...+. +.-++..+...++...+.|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77888999999999999 32 22344455433332222 34799999999999875 32245566777887888999999
Q ss_pred HHHHHHHH
Q 012111 450 AQNLENKM 457 (471)
Q Consensus 450 A~~~~~~m 457 (471)
|+.+|+++
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99888875
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=6.8e-09 Score=83.75 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 012111 81 VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA-Y 159 (471)
Q Consensus 81 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~ 159 (471)
.......+.+.|++++|+..|+.+.+.. |.+...+..+..++...|++++|...++...... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4444555667777777777777776654 5566667777777777777777777777665542 233332222111 1
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHH
Q 012111 160 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEE 238 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~ 238 (471)
...++...|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11112223445555544411 2234445555555555555555555555555442211 13344455555555555555
Q ss_pred HHHHHHHH
Q 012111 239 MESSFSAM 246 (471)
Q Consensus 239 a~~~~~~~ 246 (471)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=2.7e-08 Score=87.20 Aligned_cols=164 Identities=9% Similarity=-0.053 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 012111 113 RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 192 (471)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 192 (471)
+...+..+...+.+.|++++|...|++..+.... +...+..+..++...|++++|...++++... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 3344445555555555555555555555544222 4445555555555555555555555555431 23322221111
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 012111 193 K-SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271 (471)
Q Consensus 193 ~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (471)
. .+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 1 2334444444555555544432 3344455555555555555555555555554432111113444555555555555
Q ss_pred HHHHHHHHHH
Q 012111 272 IEKMEKWYNE 281 (471)
Q Consensus 272 ~~~a~~~~~~ 281 (471)
.++|...|++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5555544444
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=9.9e-09 Score=80.22 Aligned_cols=140 Identities=9% Similarity=-0.084 Sum_probs=98.9
Q ss_pred HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 169 (471)
..|++++|++.++.+.... +.+...+..+..+|.+.|++++|.+.|++..+.... +..+|..+..+|...|++++|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 4677888888888877653 444556677788888888888888888888776433 6778888888888888888888
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012111 170 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI-LAEMSYLGIECSAVTYNTIIDGYGKAKK 235 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 235 (471)
..|++..+.. +-+...|..+...+.+.|+++++.+. +++..+.. +-++.+|......+...|+
T Consensus 86 ~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888877632 33566777777777777777655544 46666553 3456666666666655553
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=3.7e-08 Score=87.33 Aligned_cols=202 Identities=6% Similarity=-0.055 Sum_probs=113.4
Q ss_pred HhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 169 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 169 (471)
..|++++|.++++.+.+.. +.. .+...++++.|...|... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 5788899999999888653 221 111157888888887765 34667788888888
Q ss_pred HHHHHhhcCC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHH
Q 012111 170 STINDMKSVS---DCK-PDVYTYSILIKSCTKFHRFDLIEKILAEMSYL----GIEC-SAVTYNTIIDGYGKAKKFEEME 240 (471)
Q Consensus 170 ~~~~~~~~~~---~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~ 240 (471)
..|.+..... +.. .-..+|+.+...|...|++++|...+++..+. |-.. ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 8887765421 100 01335666667777777777777777665432 1110 13455566666666 7777777
Q ss_pred HHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 012111 241 SSFSAMVESGGCHP----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVKAD-IQTLNILTKSYGRAGMYDKMR 311 (471)
Q Consensus 241 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~ 311 (471)
..|++..+...-.. ...++..+...+...|++++|+..|++.... +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77666554210000 1234555556666666666666666655432 10000 113333444444445555555
Q ss_pred HHHHHHH
Q 012111 312 SVMDFMQ 318 (471)
Q Consensus 312 ~~~~~~~ 318 (471)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555544
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=1.4e-08 Score=90.14 Aligned_cols=224 Identities=7% Similarity=0.022 Sum_probs=155.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012111 198 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 276 (471)
Q Consensus 198 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (471)
.|++++|.+++++..+.. + . .+.+ .++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 456677777777766532 1 1 1222 46777777766654 45677899999999
Q ss_pred HHHHHHHhCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHH
Q 012111 277 KWYNEFNLMGV---KA--DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF---FFPT--VVTYNIVIETFGKAGHIEKME 346 (471)
Q Consensus 277 ~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~a~ 346 (471)
..|.+...... .+ -..+|+.+..+|...|++++|...|++..+.. -.+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99988754311 11 14578888999999999999999999876531 1111 3467778888888 9999999
Q ss_pred HHHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCCHHHHH
Q 012111 347 EYFKKMKHRGMK---P--NSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVILD-TPFFNCIISAYGQAGDVEKMG 416 (471)
Q Consensus 347 ~~~~~m~~~~~~---p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 416 (471)
..|++....... + ...++..+...+...|++++|...|++..+. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988764111 1 1457888999999999999999999988753 22111 235667777888889999999
Q ss_pred HHHHHHHhCCCCCC---H---HHHHHHHHHHHhcCCHHHHHHH
Q 012111 417 ELFLTMKERHCVPD---N---ITFATMIQAYNALGMTEAAQNL 453 (471)
Q Consensus 417 ~~~~~~~~~~~~p~---~---~~~~~l~~~~~~~g~~~~A~~~ 453 (471)
..|++.. . .|+ . .....++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999988 4 232 1 2344555555 67887766653
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.2e-07 Score=78.98 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012111 220 AVTYNTIIDGYGKAKKFEEMESSFSAMV 247 (471)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (471)
...+..+...|...+++++|.+.|++..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 45 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAA 45 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=4.4e-09 Score=82.25 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012111 330 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 409 (471)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (471)
-.+...|...|++++|.+.|++.++.. +-+..+|..+..++...|++++|...|++..+.++. +..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344455555555555555555555432 223445555555555555555555555555554433 445555555555555
Q ss_pred CCHHHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 012111 410 GDVEKMGEL-FLTMKERHCVP-DNITFATMIQAYNALG 445 (471)
Q Consensus 410 g~~~~a~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g 445 (471)
|++++|.+. +++..+. .| ++.+|......+...|
T Consensus 113 ~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 555444433 3444442 23 3344444444444444
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=3.4e-08 Score=95.80 Aligned_cols=154 Identities=7% Similarity=-0.060 Sum_probs=111.3
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 170 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 170 (471)
.|++++|++.|+.+.+.. +.+...+..+...+...|++++|...|++..+.... +...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 467888888888888764 566788888888888899999999999988876433 67888888888999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 012111 171 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA---KKFEEMESSFSAMV 247 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 247 (471)
.|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..
T Consensus 79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 998887732 4457788888888889999999999998888764 44677888888888888 88999999998888
Q ss_pred HcC
Q 012111 248 ESG 250 (471)
Q Consensus 248 ~~~ 250 (471)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=1.5e-06 Score=76.25 Aligned_cols=170 Identities=11% Similarity=-0.049 Sum_probs=121.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVV----TYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PN----SITYCS 366 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 366 (471)
.+..+...|++++|..+++...+... .|+.. .+..+...+...|++++|...+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776432 22211 2334556666777899999999988874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 012111 367 LVSAYSKAGLIMKVDSILRQVEN----S-DVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD-NITFA 435 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 435 (471)
+...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|+..+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999888773 1 1111 2347788889999999999999999887642 22233 57788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhhcCCC
Q 012111 436 TMIQAYNALG-MTEAAQNLENKMIAMKENSGK 466 (471)
Q Consensus 436 ~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~ 466 (471)
.+..++.+.| .+++|.+.+++++......++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 8889999999 469999999999887665443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=5.2e-08 Score=81.18 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
.+..+...+...|++++|...|+... .|+...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666777778888877777663 4466777777777777788888888777777653 335667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDT----------------PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 431 (471)
..|++++|...++.+.+..+. +. ..+..+..++...|++++|.+.|++..+. .|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 778888887777777765433 22 56667777777777777777777777763 4543
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=3.8e-07 Score=76.71 Aligned_cols=207 Identities=9% Similarity=-0.021 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHH
Q 012111 148 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE-CS-AVTYN 224 (471)
Q Consensus 148 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~-~~~~~ 224 (471)
+...+..+...+...|++++|+..|+++....+..+. ...+..+..++.+.|++++|...|+++.+.... +. ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3444555566666677777777777776653221121 244555666666667777777777666654211 11 11333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012111 225 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 304 (471)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 304 (471)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+.. +-+...........
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH---
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH---
Confidence 333333322110 00 011122223334567777777777776542 22222221111000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 012111 305 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKV 380 (471)
Q Consensus 305 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a 380 (471)
.+...+ ......+...|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|+.++|
T Consensus 141 -------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 -------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 000000 011124556777888888888888888875 232 24677788888888888888
Q ss_pred HHHHHHHHhCCCC
Q 012111 381 DSILRQVENSDVI 393 (471)
Q Consensus 381 ~~~~~~~~~~~~~ 393 (471)
.+.++.+...++.
T Consensus 204 ~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 204 EKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHCCSC
T ss_pred HHHHHHHHhhCCC
Confidence 8888888776543
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=8.4e-07 Score=77.95 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=79.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 012111 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDI----FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-AD----IQTLNIL 297 (471)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 297 (471)
+..+...|++++|...+++..+.....++. ..+..+...+...|++++|...+++....... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666677777777777765543222221 12223445555556666666666666553211 11 2245555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 012111 298 TKSYGRAGMYDKMRSVMDFMQKR-----FFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPN-SITYCS 366 (471)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 366 (471)
..+|...|++++|...++.+.+. +..+. ..+|..+...|...|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666555421 11111 124445555555555555555555554432 11111 344455
Q ss_pred HHHHHHhcCC-HHHHHHHHHHH
Q 012111 367 LVSAYSKAGL-IMKVDSILRQV 387 (471)
Q Consensus 367 li~~~~~~g~-~~~a~~~~~~~ 387 (471)
+..++.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 5555555552 35555554443
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=6.1e-08 Score=75.38 Aligned_cols=94 Identities=14% Similarity=-0.017 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+..+...+.+.|++++|...|++..... +-+...|..+..++...|++++|...|+++.+.++. +...|..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 3344444444555555555555444432 223444444444455555555555555544444433 34444444444555
Q ss_pred cCCHHHHHHHHHHHHh
Q 012111 409 AGDVEKMGELFLTMKE 424 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~ 424 (471)
.|++++|+..|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=3.2e-07 Score=72.80 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (471)
..+..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 356666777788888888888888887753 336777888888888888999998888888876554 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 407 GQAGDVEKMGELFLTMKERHCVPDNITFAT--MIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
...|++++|...|+++.+.. +.+...+.. +...+...|++++|.+.+++....-...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 89999999999998888752 224445533 33447778899999998888776655433
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=4.6e-06 Score=73.61 Aligned_cols=172 Identities=10% Similarity=-0.013 Sum_probs=131.5
Q ss_pred hcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 012111 92 KKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK-QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-G-LLDEA 168 (471)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~~~~a 168 (471)
+..++|+++++.+...+ |.+..+|+..-.++...| .+++++.+++.+.....+ +..+|+.-..++... + +++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34468999999999876 667778888888888888 599999999999988665 888888877777776 6 88999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----
Q 012111 169 FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--------LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----- 235 (471)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----- 235 (471)
+++++++.+. .+-|..+|+.-.-.+.+.+.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 9999999873 3567777777666666655555 7888888888765 4478888887777777765
Q ss_pred --HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 012111 236 --FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271 (471)
Q Consensus 236 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (471)
++++++.+++..... +-|...|+.+-..+.+.|.
T Consensus 222 ~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 677888887777763 5566777776666665554
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=1.2e-07 Score=71.44 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|...+++..+.++. +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 4444444445555555555555444432 223444444444444555555555555444444333 34444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 012111 409 AGDVEKMGELFLTMKE 424 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~ 424 (471)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555544444444
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=7.4e-07 Score=78.30 Aligned_cols=166 Identities=11% Similarity=-0.047 Sum_probs=83.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHH
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTV-----VTYNIVIETFGKAGHIEKMEEYFKKMKHRGM---KPN--SITYCS 366 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~~~ 366 (471)
.+..+...|++++|...+....+....... ..+..+...+...|++++|...+++...... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344445555555555555544443211110 1122233444555666666666666553211 111 335566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---CCCC-c--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHH
Q 012111 367 LVSAYSKAGLIMKVDSILRQVEN---SDVI-L--DTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVP-DNITFA 435 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~ 435 (471)
+...|...|++++|...++++.+ .... + ...++..+...|...|++++|+..+++..+. +... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666666666666665541 1111 0 1135566666666666666666666665432 1111 144555
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHHHHhhh
Q 012111 436 TMIQAYNALGMTEAA-QNLENKMIAMKE 462 (471)
Q Consensus 436 ~l~~~~~~~g~~~~A-~~~~~~m~~~~~ 462 (471)
.+..+|...|++++| ...+++++....
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 666666666666666 555666655443
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=1e-05 Score=71.42 Aligned_cols=220 Identities=7% Similarity=-0.037 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-G-NIEKME 276 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 276 (471)
..++|+++++.++... +-+..+|+.--..+...| .++++++.++.+.... +.+..+|+.-..++... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445666666665543 334455555555555555 3666666666665543 44455555555554444 4 556666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------
Q 012111 277 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------- 341 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 341 (471)
.+++.+.+.. +-+..+|+.-.-.+.+.|.++ +++..++.+.+..+. |...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 6666665543 344444444333333333333 556666666555333 55555555555555544
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----CCcCH
Q 012111 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI--------------------MKVDSILRQVENSD-----VILDT 396 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~ 396 (471)
++++++.+++++... +-|...|+.+-..+.+.|.. .....+...+...+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 456666666666542 22555555555545444432 11222222222111 02355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 397 PFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
..+..|+..|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 56666666666666666666666666543
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=1.2e-07 Score=78.10 Aligned_cols=139 Identities=7% Similarity=-0.064 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--cC
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVI--LD 395 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~ 395 (471)
..+..+...+...|++++|...+++.... +..+ ...++..+...+...|++++|...+++..+. +-. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444445555555555555555544431 1111 2234455555555556666665555554332 101 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 012111 396 TPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPD----NITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 465 (471)
...+..+...+...|++++|...+++..+.. -..+ ..++..+...+...|++++|.+.++++++.....+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 2345555556666666666666665554210 0011 12334555566666666666666666665554443
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=3.9e-08 Score=76.55 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (471)
..+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+++...++. +...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 344555556666666666666666666543 235556666666666666666666666666655444 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 012111 407 GQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~ 424 (471)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666654
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=1.1e-06 Score=72.95 Aligned_cols=132 Identities=8% Similarity=-0.074 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 257 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 336 (471)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (471)
..+..+...+...|++++|...|++.. .++...+..+...+...|++++|...++...+... .+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 445667788889999999999998873 56888999999999999999999999999887643 3677888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 337 GKAGHIEKMEEYFKKMKHRGMK--------------P-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
...|++++|...|++..+.... | ....+..+..++...|++++|...++.+.+..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999999886311 1 1267888999999999999999999999987654
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1.7e-06 Score=76.06 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 012111 150 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYLGI---ECS--A 220 (471)
Q Consensus 150 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~ 220 (471)
..+...+..+...|++++|++.+.+..+.....++. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345556667778888888888887766532211111 1233344455666677777777777664321 111 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH---HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-C
Q 012111 221 VTYNTIIDGYGKAKKFEEMESSFSAMV---ESGGCHP--DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG----VKA-D 290 (471)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 290 (471)
.+++.+...|...|++++|...|++.. +..+..+ ...++..+...|...|++++|...+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 466667777777777777777777665 2211111 11456666667777777777777776654321 011 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKM-RSVMDF 316 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a-~~~~~~ 316 (471)
..+|..+..+|.+.|++++| ...++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34555556666666666666 444443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=1.1e-06 Score=68.33 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (471)
...+..+...+.+.|++++|...|+++...++. +...|..+..+|...|++++|+..|++..+.. +-++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 456777778888888888888888888887765 78888888888888888888888888888742 2256777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 441 YNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
|...|++++|...|+++++..|++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888887654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=1.4e-07 Score=75.94 Aligned_cols=121 Identities=8% Similarity=0.022 Sum_probs=88.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--H
Q 012111 302 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLI--M 378 (471)
Q Consensus 302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 378 (471)
...|++++|...++...+... .+...+..+...|...|++++|...|++..... +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 456778888888887776533 356777888888888888888888888887753 3356677777777 6778887 8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 379 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
+|...++.+.+.++. +...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888876654 6777778888888888888888888888774
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=1.1e-07 Score=82.96 Aligned_cols=98 Identities=9% Similarity=-0.006 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 298 (471)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34455555666666666666666666665542 3355566666666666666666666666665543 34455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 012111 299 KSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~ 319 (471)
.++...|++++|...|....+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666665544
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=5.1e-07 Score=67.92 Aligned_cols=101 Identities=8% Similarity=-0.059 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
..+......+.+.|++++|.+.|++..+.++. +...|..+..+|...|++++|+..|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45666677777778888888888777776654 67777777777777788888888777777642 23566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcC
Q 012111 442 NALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
...|++++|.+.|+++++.+|+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCC
Confidence 77788888888888877777654
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=1.1e-06 Score=69.52 Aligned_cols=128 Identities=9% Similarity=-0.105 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
.+..+...+...|++++|...+....+.... +...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444555566666666666666666554222 45566666666777777777777777766653 335666777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNC--IISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
..|++++|...++++.+..+. +...+.. ++..+...|++++|+..+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777777665443 4444433 3333666677777777776554
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=9e-07 Score=75.50 Aligned_cols=186 Identities=7% Similarity=-0.059 Sum_probs=82.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------
Q 012111 232 KAKKFEEMESSFSAMVESGGCHPDIFTLNSM-------ISAYGNSGNIEKMEKWYNEFNLMGVKAD-------------- 290 (471)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 290 (471)
..++...|.+.|.++.+.. +-....|..+ ..++...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 4677777777777776653 3344556555 3334333334444433333322 1111
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 012111 291 --------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-- 360 (471)
Q Consensus 291 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 360 (471)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 1222334444555555555555555544432 222233333334455555555555554332210 010
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12344444455555555555555555443221121 12333344444455555555555555544
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=2.1e-07 Score=81.20 Aligned_cols=197 Identities=7% Similarity=-0.064 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334 (471)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 334 (471)
+...+..+...+...|++++|...|++..... +.+...+..+..+|.+.|++++|...++...+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45678888899999999999999999998764 557889999999999999999999999999886433 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 012111 335 TFGKAGHIEKMEEYFKKMKHRGMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 413 (471)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 413 (471)
++...|++++|...|++..+.. |+. ..+...+....+ ...+. -+..........+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999887642 211 011111111111 11111 1222333334445555444433 2 368999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc-CCHHHHHHHHHHHHHhhhc
Q 012111 414 KMGELFLTMKERHCVPDNITFA-TMIQAYNAL-GMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 414 ~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 463 (471)
+|++.+++..+. .|+..... .+...+.+. +.+++|.++|+++.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 999999888864 56654443 333444444 6788999999988765443
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.70 E-value=1.9e-05 Score=69.36 Aligned_cols=232 Identities=9% Similarity=0.023 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-
Q 012111 202 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG- 270 (471)
Q Consensus 202 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 270 (471)
++|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-..++...+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCc
Confidence 35666666666553 2344445443333332222 345555555555542 344555555554444444
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 271 -NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 348 (471)
Q Consensus 271 -~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 348 (471)
++++++.+++.+.+.. +-+..+|+.-.-++...|. ++++...++.+.+..+. |...|+.....+...+....+-
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~-- 199 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG-- 199 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccc--
Confidence 2455555555555443 3344444444444444444 34455555544444322 4444444333333221000000
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----------CCHHHHHH
Q 012111 349 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-----------GDVEKMGE 417 (471)
Q Consensus 349 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~ 417 (471)
..+ . ...+.++++.+.+.......+. |...|+-+-..+.+. +.++++++
T Consensus 200 -----~~~-~-------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 200 -----PQG-R-------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp ---------C-------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred -----ccc-c-------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 000 0 0002345555556555555444 555555444444333 34677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 418 LFLTMKERHCVPDNITFATMI-----QAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.++++.+. .||. .|..+. .+....|..+++...+.++++.+|-
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 77777763 4553 232211 1222456777888888888877774
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=1.4e-06 Score=64.95 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (471)
..+..+...+...|++++|..+++++.... +.+..++..+...+...|++++|..+++++.+..+. +...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 445555566666666666666666666542 234556666666666666666666666666655433 555666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 407 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442 (471)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (471)
...|++++|...++++.+.. +.+...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 66677777777776666531 223444444444443
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=7.9e-07 Score=79.71 Aligned_cols=130 Identities=11% Similarity=-0.057 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN--------------SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
.+..+...+.+.|++++|...|++......... ...|..+..++.+.|++++|...++++.+..+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444455555555555555555555555421111 356666666666677777777777666665544
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 012111 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA-QNLENKMIA 459 (471)
Q Consensus 394 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 459 (471)
+...|..+..+|...|++++|+..|+++.+.. +-+...+..+..++...|+.++| ..++++|..
T Consensus 229 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 229 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667777777777777776666531 22455566666666666666666 445555543
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=4.8e-07 Score=69.78 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
.+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+.....++. +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 44445556666677777777777666653 235566666666666777777777777666665544 5556666666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 012111 408 QAGDVEKMGELFLTMKE 424 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~ 424 (471)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 67777777776666654
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=1.1e-06 Score=66.20 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+..+. +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3455566666677777777777777766653 335666777777777777777777777777665443 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 406 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 446 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 446 (471)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777776642 2255566666666666654
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=2.5e-06 Score=63.55 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
.+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|..+++++.... +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444445555555555555555444321 134445555555555555555555555555442 224455555555566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012111 373 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (471)
..|++++|...++++.+..+. +...+..+...+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 666666666666655554332 344444444333
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=7.8e-07 Score=70.51 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (471)
+...+..+...+...|++++|+..|++..... +-+...|..+..++...|++++|...+++..+.++. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777788888888888888888888763 336778888888888888888888888888877655 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 012111 405 AYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~ 425 (471)
+|...|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888764
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=1.8e-06 Score=65.94 Aligned_cols=96 Identities=6% Similarity=-0.097 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+.++. +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3444444455555555555555555544432 223444444455555555555555555554444332 34444444445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012111 406 YGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~ 423 (471)
+...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554444
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=1.7e-06 Score=71.17 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--C
Q 012111 292 QTLNILTKSYGRAGMYDKMRSVMDFMQK----RFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKP--N 360 (471)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~ 360 (471)
.++..+...+...|++++|...+++..+ .+.. .....+..+...+...|++++|...+++.... +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444555554444444333 1111 12234555556666666766666666665442 1011 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENS----DVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
...+..+...+...|++++|...+++..+. +.. .-..++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334566666777777777777777665431 111 1123356677778888888888888776654
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=4.9e-07 Score=72.73 Aligned_cols=123 Identities=9% Similarity=-0.026 Sum_probs=76.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 012111 267 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHI--E 343 (471)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 343 (471)
...|++++|...+++..... +.+...+..+...|...|++++|...|+...+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34566677777776665543 445666677777777777777777777766654322 45555566666 5566776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 344 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
+|...++++.... +-+...+..+...+...|++++|...++.+.+..+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777766653 22456666667777777777777777777666543
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=4.8e-06 Score=71.02 Aligned_cols=128 Identities=9% Similarity=-0.010 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 012111 261 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGK 338 (471)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 338 (471)
.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34455556666666666666654432 322244444445566666666666665443321 110 1244455556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 339 AGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666666666666653322132 2344555555666666666666666666544
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=2.5e-06 Score=64.21 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=34.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 012111 192 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 271 (471)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (471)
...+...|+++.|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|+
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHhCC
Confidence 333333344444444443333321 1233333334444444444444444444443321 2223333333444444444
Q ss_pred HHHHHHHHHHHH
Q 012111 272 IEKMEKWYNEFN 283 (471)
Q Consensus 272 ~~~a~~~~~~~~ 283 (471)
+++|...+++..
T Consensus 96 ~~~A~~~~~~~~ 107 (131)
T 2vyi_A 96 HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.8e-06 Score=65.30 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 3333333444444444444444433321 113333444444444444444444444444433222 33344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 012111 409 AGDVEKMGELFLTMK 423 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~ 423 (471)
.|++++|.+.|++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444443
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.4e-06 Score=65.52 Aligned_cols=95 Identities=8% Similarity=-0.035 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
.+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+++..+.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44445555556666666666666555542 224555555555556666666666666555555433 4555555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 012111 408 QAGDVEKMGELFLTMKE 424 (471)
Q Consensus 408 ~~g~~~~a~~~~~~~~~ 424 (471)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55666666665555554
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=2.3e-06 Score=64.76 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 012111 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 267 (471)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (471)
+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 3333333444444444444444433322 1233334444444444444444444444443331 223333444444444
Q ss_pred hcCCHHHHHHHHHHH
Q 012111 268 NSGNIEKMEKWYNEF 282 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~ 282 (471)
..|++++|...|++.
T Consensus 96 ~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 96 AMKDYTKAMDVYQKA 110 (133)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444443
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=2.3e-06 Score=76.72 Aligned_cols=96 Identities=8% Similarity=-0.124 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+..+. +..++..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3566777777778888888888888777763 336777777888888888888888888887776655 66777777778
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 012111 406 YGQAGDVEKM-GELFLTMK 423 (471)
Q Consensus 406 ~~~~g~~~~a-~~~~~~~~ 423 (471)
+...|+.++| ..+|+.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887777 44555554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=4.6e-07 Score=68.30 Aligned_cols=106 Identities=11% Similarity=0.023 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--C----HHHHH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--D----TPFFN 400 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 400 (471)
..+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|++.+++..+.++.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566666777777777777777766642 2245666667777777777777777776665432211 1 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 435 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 435 (471)
.+..++...|++++|++.|++..+ ..||+.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 566666666777777777666655 245655543
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=5.2e-07 Score=70.07 Aligned_cols=100 Identities=11% Similarity=0.007 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
..+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++..... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444555555556666666666555554443 55555555555555666666666665555431 12344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHhhhc
Q 012111 442 NALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
...|++++|.+.++++++..|.
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcC
Confidence 5666666666666665555543
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.2e-06 Score=77.99 Aligned_cols=207 Identities=9% Similarity=-0.040 Sum_probs=142.3
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCC---------------hhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQAR---------------CQTFTKLMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
|...+...+.+.+.|++++|++.|..+.+...-..+ ...+..++..|...|++++|.+.+..+..
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566677888999999999999999876421111 12477889999999999999999988765
Q ss_pred CC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 143 DG-LKPSV----DVYTALVSAYGQSGLLDEAFSTINDMKSV----SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213 (471)
Q Consensus 143 ~~-~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (471)
.- ..++. .+.+.+...+...|+.+.|..+++..... .....-..++..+...+...|++++|..+++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 31 11122 12333334445568889998888776431 11222355678888899999999999999988754
Q ss_pred C--CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-C-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 214 L--GI---ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-C-HP-D--IFTLNSMISAYGNSGNIEKMEKWYNEFN 283 (471)
Q Consensus 214 ~--g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (471)
. +. +....++..++..|...|++++|...+++...... . .| . ...+..+...+...|++++|...|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 11 11256788888999999999999999887754211 1 11 1 2456666777788899999988887764
Q ss_pred h
Q 012111 284 L 284 (471)
Q Consensus 284 ~ 284 (471)
.
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=0.00011 Score=64.67 Aligned_cols=178 Identities=5% Similarity=-0.120 Sum_probs=121.4
Q ss_pred HHHHHHHhhcHH-HHHHHHHHhhhccCccCChhHHHHHHHHHhcCCC----------HHHHHHHHHHHHhCCCCCCHHHH
Q 012111 84 ALDEAIKQKKWQ-LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQ----------PEQASLLFEVMLSDGLKPSVDVY 152 (471)
Q Consensus 84 ~l~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~ 152 (471)
.+....+.|.++ +|+++++.+...+ |.+..+|+.--.++...+. +++++.+++.+.....+ +..+|
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW 111 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 111 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHH
Confidence 344444566654 7999999999875 5556667666555544443 67888888888876554 77888
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012111 153 TALVSAYGQSG--LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDG 229 (471)
Q Consensus 153 ~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 229 (471)
+.-.-++...+ .+++++.+++++.+.. +-|..+|+.-.-.+...|. ++++++.++.+++.. +-|...|+.....
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 87777777777 4788888888888732 5677777777777777777 588888888888765 4477777766555
Q ss_pred HHcc--------------CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 012111 230 YGKA--------------KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269 (471)
Q Consensus 230 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (471)
+... +.++++++.+....... +-|...|+-+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 5443 34667777777776653 45566665544444333
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=4e-06 Score=62.91 Aligned_cols=98 Identities=7% Similarity=-0.156 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
..+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555666666777777777777776665544 56666667777777777777777777766541 22455666666677
Q ss_pred HhcCCHHHHHHHHHHHHHhh
Q 012111 442 NALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~ 461 (471)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777777777777777666
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=6.6e-07 Score=65.40 Aligned_cols=103 Identities=11% Similarity=0.006 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMI 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 438 (471)
...+..+...+...|++++|...++++.+..+. +...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344556666677777777777777777665543 56667777777777788888888887777642 22 466777777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHhhhcCC
Q 012111 439 QAYNAL-GMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 439 ~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 465 (471)
..+... |++++|.+.+++++...|.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777788 888888888888777766543
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=8.7e-07 Score=66.08 Aligned_cols=97 Identities=7% Similarity=-0.098 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 012111 365 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNA 443 (471)
Q Consensus 365 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 443 (471)
..+...+.+.|++++|...++++.+..+. +...|..+..++...|++++|+..|++..+. .| +...+..+..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34445566666666666666666665544 5666666666666677777777777666653 23 45556666666667
Q ss_pred cCCHHHHHHHHHHHHHhhhcC
Q 012111 444 LGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~~~ 464 (471)
.|++++|...++++++..|..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777766666543
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=2.2e-06 Score=63.16 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4456667777777888888888888777653 335667777777777788888888888777766544 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 012111 406 YGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~ 425 (471)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77788888888888777764
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=4.1e-06 Score=63.00 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 012111 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPD----NITFA 435 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~----~~~~~ 435 (471)
..+..+...+.+.|++++|+..|++..+.++. +...|..+..+|...|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666667777777777777776666544 56666667777777777777777776665421 1111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 436 TMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
.+..++...|++++|.+.+++.++..++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5666666777777777777776665543
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=1.1e-05 Score=59.24 Aligned_cols=97 Identities=13% Similarity=-0.033 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 372 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 372 (471)
.+..+...+...|++++|...++....... .+...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444455555555555555555544322 134444445555555555555555555554432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 012111 373 KAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~ 391 (471)
..|++++|.+.++...+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 5555555555555555443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=5.8e-06 Score=67.77 Aligned_cols=130 Identities=14% Similarity=-0.034 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMK-P--------------NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
+..+...+...|++++|...|++....... | ....+..+..++...|++++|...++...+..+.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 444445555555666666666555543111 0 0256667777777777777777777777766543
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhh
Q 012111 394 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQ-NLENKMIAMK 461 (471)
Q Consensus 394 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 461 (471)
+...+..+..+|...|++++|++.|++..+. .| +...+..+..++...|+.+++. ..+..|...+
T Consensus 121 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 121 -NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6667777777777778888888888777764 33 4556666666666666666665 4555554443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=4e-06 Score=66.34 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY 159 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (471)
.+...-..+.+.|++++|++.|+.+.+.. +.+...|..+..++...|++++|+..|+...+.... +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44455566678888999999998888765 567788888888888889999999888888876533 678888888888
Q ss_pred HhcCCHHHHHHHHHHhhcC
Q 012111 160 GQSGLLDEAFSTINDMKSV 178 (471)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~ 178 (471)
...|++++|+..|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888999888888888764
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.7e-05 Score=72.44 Aligned_cols=56 Identities=11% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 227 IDGYGKAKKFEEMESSFSAMVESGGCHPDI---------------FTLNSMISAYGNSGNIEKMEKWYNEF 282 (471)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (471)
.+.+.+.|++++|++.|..+.+......+. ..+..+...|...|++++|.+++..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566677777777777776653221111 12444555555555555555555544
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=6e-06 Score=63.51 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012111 363 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 442 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 442 (471)
.+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3444455555666666666666665555443 55555555666666666666666666655531 223445555555666
Q ss_pred hcCCHHHHHHHHHHHHHhhhc
Q 012111 443 ALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..|++++|.+.++++++..|.
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 666666666666666655553
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=3.7e-06 Score=63.28 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cC----HHHHH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LD----TPFFN 400 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 400 (471)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666677777777777777766653 335666667777777777777777777776654321 11 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 440 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 440 (471)
.+..++...|++++|.+.|+++.+. .|+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 7777777788888888888777764 4565555444433
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=9.1e-06 Score=66.55 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012111 327 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 406 (471)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (471)
..+..+..++...|++++|...+++..... +.+...+..+..++...|++++|...|++..+..+. +..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 556667777777888888888888777753 335677777888888888888888888887776544 566777777777
Q ss_pred HhcCCHHHHH-HHHHHHHh
Q 012111 407 GQAGDVEKMG-ELFLTMKE 424 (471)
Q Consensus 407 ~~~g~~~~a~-~~~~~~~~ 424 (471)
...++..++. ..+..|..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666555 44444443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=2.1e-05 Score=59.76 Aligned_cols=102 Identities=5% Similarity=-0.102 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 439 (471)
+...+..+...+...|++++|...|+...+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4555666666666666666666666666655443 45566666666666666666666666666532 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 440 AYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
++...|++++|...++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666666665
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=8.9e-06 Score=62.76 Aligned_cols=98 Identities=9% Similarity=-0.066 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 400 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (471)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556667777777778888888888777764 444 566677777777777777777777777765443 566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 401 CIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 401 ~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777663
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=3.2e-06 Score=66.38 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cCHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PN----SITYCSLVSAYSKAGLIMKVDSILRQVENS----DVI-LDTP 397 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~ 397 (471)
++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|...+++..+. +.. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665543100 11 135666677777777777777777765532 111 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKER----HCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
++..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.++.....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 5677777888888888888888877642 1111 13456677788889999999999999988776543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=1e-05 Score=60.82 Aligned_cols=93 Identities=9% Similarity=-0.042 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHHHHHHHH
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD---TPFFNCIIS 404 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 404 (471)
.+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...++.+.+..+. + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 455666777888888888887776531 122 46666777777788888888888777765543 3 455667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 012111 405 AYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~ 425 (471)
++...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777778888888888777764
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=5.7e-06 Score=62.21 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VPD----NITF 434 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~ 434 (471)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456778888999999999999999999887654 788899999999999999999999999886421 122 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 435 ATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
..+..++...|++++|.+.++++++..++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 88889999999999999999999998763
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-05 Score=60.19 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012111 290 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 365 (471)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 365 (471)
+...+..+...+...|++++|...|+...+.. |+ ...+..+...+...|++++|...+++..... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45555666666666666666666666666542 33 4455556666666666666666666665542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 366 SLVSAYSKAGLIMKVDSILRQVENSD 391 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~~~~~~ 391 (471)
.+..++...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666666544
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=7.5e-06 Score=60.91 Aligned_cols=95 Identities=7% Similarity=-0.100 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+..+...+.+.|++++|...+++..+.. +-+...+..+..++...|++++|...+++..+.++. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4455667778888888888888888763 336777888888888888888888888888887665 67788888888888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 012111 409 AGDVEKMGELFLTMKER 425 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~~ 425 (471)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888888763
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=1.3e-05 Score=61.70 Aligned_cols=103 Identities=14% Similarity=-0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVIL------D-----TPFFNCIISAYGQAGDVEKMGELFLTMKER-----HC 427 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~ 427 (471)
+......+.+.|++++|...|++..+..+.. + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455556666666666666665543321 2 237888888888899999999888888873 12
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 012111 428 VPD-NITF----ATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466 (471)
Q Consensus 428 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 466 (471)
.|+ ...| .....++...|++++|...|+++++..|+...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 565 4567 78889999999999999999999999988554
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=8.5e-06 Score=59.27 Aligned_cols=93 Identities=8% Similarity=-0.046 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHH
Q 012111 188 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP--DIFTLNSMISA 265 (471)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~ 265 (471)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHH
Confidence 3334444444444444444444444332 2233444444444444444444444444444332 11 23344444444
Q ss_pred HHhc-CCHHHHHHHHHHHH
Q 012111 266 YGNS-GNIEKMEKWYNEFN 283 (471)
Q Consensus 266 ~~~~-~~~~~a~~~~~~~~ 283 (471)
+... |++++|.+.+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 4444 44444444444443
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=8.4e-06 Score=64.28 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------G---------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 388 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 388 (471)
...+......+.+.|++++|+..|.+.... . -+.+...|..+..++.+.|++++|...++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677777888889999999988887764 0 01123567777777888888888888888877
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 389 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431 (471)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 431 (471)
+.++. +...|..+..+|...|++++|...|++..+. .|+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 76654 6777777888888888888888888877764 4543
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=1.4e-06 Score=64.45 Aligned_cols=88 Identities=5% Similarity=-0.083 Sum_probs=63.5
Q ss_pred HhhcHHHHHHHHHHhhhccC-ccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 90 KQKKWQLALKIFGLLRQQQW-YQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168 (471)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 168 (471)
..|++++|++.|+.+.+.+. -+.+..++..+..++...|++++|...|++..+.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35778888888888887520 0345567888888888888888888888888876543 577788888888888888888
Q ss_pred HHHHHHhhcC
Q 012111 169 FSTINDMKSV 178 (471)
Q Consensus 169 ~~~~~~~~~~ 178 (471)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887763
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=1.6e-05 Score=74.44 Aligned_cols=131 Identities=10% Similarity=-0.019 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 356 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (471)
...+..+...+.+.|++++|...|.+..+...... ...|..+..+|.+.|++++|+..+++.+...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566666777777777777777777666422211 3556666666666666666666666666643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 012111 357 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE-LFLTMK 423 (471)
Q Consensus 357 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 423 (471)
+.+...|..+..+|...|++++|...|+++.+..+. +..++..+..++.+.|+.+++.+ ++..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556666666666666666666666666665443 44556666666666666655543 334443
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=3.1e-06 Score=75.91 Aligned_cols=154 Identities=9% Similarity=0.032 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 370 (471)
...+..+...+.+.|++++|...|...... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445566666777777888888887776654 222221 122233333332221 1378888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 012111 371 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQA-YNALGMTE 448 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 448 (471)
+.+.|++++|...+++..+..+. +...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987655 7889999999999999999999999999864 454 3444444444 34456788
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 012111 449 AAQNLENKMIAMKENSGK 466 (471)
Q Consensus 449 ~A~~~~~~m~~~~~~~~~ 466 (471)
.+.+++++|....|.+..
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 889999999999887654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.23 E-value=3.2e-06 Score=62.52 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=59.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012111 338 KAGHIEKMEEYFKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 415 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 415 (471)
..|++++|+..|++..+.+. +-+...+..+..++...|++++|...++++.+..+. +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35677778888887776431 223456677777777888888888888877776655 567777777777788888888
Q ss_pred HHHHHHHHhC
Q 012111 416 GELFLTMKER 425 (471)
Q Consensus 416 ~~~~~~~~~~ 425 (471)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887777654
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=2.9e-05 Score=58.25 Aligned_cols=94 Identities=15% Similarity=0.036 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCccCCh---hHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 012111 81 VLEALDEAIKQKKWQLALKIFGLLRQQQWYQARC---QTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPS---VDVYTA 154 (471)
Q Consensus 81 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ 154 (471)
+......+...|++++|++.|+.+.+.. +.+. ..+..+..++...|++++|...|+...+.... + ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 3444556678889999999999888764 3344 47778888888889999999988888876432 3 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc
Q 012111 155 LVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 155 li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
+..++...|++++|...|+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888888876
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=2.6e-06 Score=80.16 Aligned_cols=117 Identities=9% Similarity=-0.127 Sum_probs=52.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 380 (471)
+.+.|++++|...+++..+.... +...|..+..+|.+.|++++|...+++..+.. +-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555555443221 34445555555555555555555555555432 22344455555555555555555
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 012111 381 DSILRQVENSDVILDTPFFNCIISA--YGQAGDVEKMGELFL 420 (471)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 420 (471)
.+.++++.+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555443322 22233333333 444455555555544
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=3.1e-05 Score=72.49 Aligned_cols=125 Identities=13% Similarity=-0.017 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012111 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---------------IQTLNILTKSYGRAGMYDKMRSVMDFMQK 319 (471)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (471)
....+..+...+.+.|++++|...|++..... +.+ ...|..+..+|.+.|++++|...++...+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34567777778888888888888888876643 222 46777788888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 320 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 382 (471)
.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.+
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6433 56677778888888888888888888877652 2244566777777777777766653
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=2.3e-05 Score=61.34 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cCHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRG----MKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVI-LDTP 397 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~ 397 (471)
.+..+...+...|++++|...+++..... ..+ ....+..+...+...|++++|...+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 45555666666677777776666655321 000 1345666677777778888877777765532 111 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567777888888999988888887764
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=3.4e-05 Score=60.74 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 291 IQTLNILTKSYGRAGMYDKMRSVMDFMQKR--------FF---------FPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (471)
...+......+.+.|++++|...|...... .. +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888999999999999887664 10 1123577788888889999999999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 354 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
... +.+...|..+..++...|++++|...|+...+..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 864 346788888999999999999999999988877544
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=3.6e-05 Score=69.73 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 012111 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMI 438 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 438 (471)
+..+|..+..+|.+.|++++|...++++.+..+. +...|..+..+|...|++++|++.|+++.+. .| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4567778888888888888888888888887654 6778888888888888999998888888774 34 556666666
Q ss_pred HHHHhcCCHHHHHH
Q 012111 439 QAYNALGMTEAAQN 452 (471)
Q Consensus 439 ~~~~~~g~~~~A~~ 452 (471)
..+...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776643
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=8e-06 Score=76.88 Aligned_cols=116 Identities=11% Similarity=-0.006 Sum_probs=85.8
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA 168 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 168 (471)
.+.|++++|++.|+.+.+.. +.+..++..+..++.+.|++++|...+++..+.... +...|..+..+|...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 46788999999999888864 566788888888999999999999999988887433 678888888889999999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 012111 169 FSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILA 209 (471)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 209 (471)
++.|++..+...- +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999888764322 23344444444 777788888888877
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=3.3e-05 Score=56.71 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 344 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 344 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
.|+..|++..+.. +.+...+..+...+...|++++|...+++..+.++. +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777766643 335677777777888888888888888887776554 56677777778888888888888887776
Q ss_pred h
Q 012111 424 E 424 (471)
Q Consensus 424 ~ 424 (471)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=8e-05 Score=67.43 Aligned_cols=91 Identities=4% Similarity=-0.089 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (471)
+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++++|...|+++.+..+. +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34577778888888899999999998888753 336778888888899999999999999888877654 6777777777
Q ss_pred HHHhcCCHHHHHH
Q 012111 405 AYGQAGDVEKMGE 417 (471)
Q Consensus 405 ~~~~~g~~~~a~~ 417 (471)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=0.00032 Score=53.33 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHH
Q 012111 341 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMG 416 (471)
Q Consensus 341 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 416 (471)
++++|..+|++..+.| .++.. +...|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555544 22222 4444444445555555555555443 44444555555554 45555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhh
Q 012111 417 ELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 417 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 461 (471)
++|++..+.| ++..+..|...|.. .++.++|.+++++..+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555542 34444445555554 455555555555555543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00081 Score=64.51 Aligned_cols=155 Identities=7% Similarity=-0.054 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 012111 307 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG- 375 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 375 (471)
.++|...++.+.+..+. +...|+.--..+...|+ ++++++.++.+.... +-+..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45677777777776443 45566665555555555 888999999888864 336778888788888888
Q ss_pred -CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------
Q 012111 376 -LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNAL--------- 444 (471)
Q Consensus 376 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 444 (471)
+++++.+.++++.+.++. +..+|+.-..++.+.| .++++++.++++.+.. .-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999988877 8888888888888888 8899999999888753 23677777776666553
Q ss_pred -----CCHHHHHHHHHHHHHhhhcCC
Q 012111 445 -----GMTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 445 -----g~~~~A~~~~~~m~~~~~~~~ 465 (471)
+.++++.+.+++++..+|+..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 567999999999999988754
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.97 E-value=0.00019 Score=55.16 Aligned_cols=109 Identities=8% Similarity=-0.020 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKP------N-----SITYCSLVSAYSKAGLIMKVDSILRQVENS------- 390 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------- 390 (471)
+......+...|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666777777777777776642110 2 237888888888888888888888888876
Q ss_pred CCCcCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 012111 391 DVILDTPFF----NCIISAYGQAGDVEKMGELFLTMKE-----RHCVPDNITFATMI 438 (471)
Q Consensus 391 ~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 438 (471)
++. +...| .....++...|++++|+..|++..+ .|+.+........+
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 544 56677 8888899999999999999998875 35555544444333
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.0013 Score=63.15 Aligned_cols=170 Identities=7% Similarity=-0.122 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 012111 272 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM----------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG- 340 (471)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 340 (471)
.++|++.++++.... +-+..+|+.--.++...|+ ++++...++.+.+...+ +..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345666666666543 3344455544444444444 77777788777776444 6667777777777777
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---------
Q 012111 341 -HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQA--------- 409 (471)
Q Consensus 341 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 409 (471)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++++.++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888888764 336777777777777777 788888888888887776 778887777766653
Q ss_pred -----CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 012111 410 -----GDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMT 447 (471)
Q Consensus 410 -----g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 447 (471)
+.++++++.++++... .| |...|..+...+.+.++.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 5578899999888874 34 567777766666666653
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=8.9e-05 Score=69.41 Aligned_cols=126 Identities=10% Similarity=-0.074 Sum_probs=71.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-c-CHHHHHH
Q 012111 336 FGKAGHIEKMEEYFKKMKHRG---M---KP-NSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFNC 401 (471)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~---~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~ 401 (471)
+...|++++|..++++..+.. + .| ...+++.|..+|...|++++|..++++..+ .|.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666655321 1 11 234566666677777777777766666542 2221 1 2335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012111 402 IISAYGQAGDVEKMGELFLTMKE-----RHC-VPDN-ITFATMIQAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
|...|...|++++|+.++++..+ .|- .|+. .+...+-.++...|.+++|..+++++.+..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766553 121 1222 233344466666777777777777776544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00096 Score=50.63 Aligned_cols=112 Identities=13% Similarity=-0.028 Sum_probs=77.8
Q ss_pred hhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----SGLLD 166 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~ 166 (471)
.+++++|++.|+.+.+.+ .+.. . +...|...+.+++|.+.|++..+.| +...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 356778888888887765 3333 3 6667777777888888888877753 56677777777776 67777
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 012111 167 EAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLG 215 (471)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 215 (471)
+|++.|++..+ . -+...+..|...|.. .++.++|.+.|+...+.|
T Consensus 79 ~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACG-L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 78777777766 2 345566666666666 667777777777776665
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=8.7e-05 Score=66.38 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012111 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 228 (471)
Q Consensus 149 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 228 (471)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 444555666666667777777777766542 233221 111222222221110 124555666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 229 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666542 33455666666666666666666666666544
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=9.4e-05 Score=54.19 Aligned_cols=79 Identities=10% Similarity=-0.105 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012111 96 LALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 175 (471)
Q Consensus 96 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 175 (471)
.|++.|+.+.+.. +.+...+..+...+...|++++|...|+...+.... +...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4667777777664 566778888888888888888888888888776432 5677888888888888888888888877
Q ss_pred hc
Q 012111 176 KS 177 (471)
Q Consensus 176 ~~ 177 (471)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=8.1e-05 Score=53.95 Aligned_cols=87 Identities=10% Similarity=-0.039 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHH
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-------NIT 433 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~~ 433 (471)
...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|++.+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 344555566666666666666666666655443 5556666666666666666666666666653 333 333
Q ss_pred HHHHHHHHHhcCCHHHH
Q 012111 434 FATMIQAYNALGMTEAA 450 (471)
Q Consensus 434 ~~~l~~~~~~~g~~~~A 450 (471)
+..+..++...|+.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhHhhh
Confidence 44444444444444433
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.79 E-value=6.8e-05 Score=57.51 Aligned_cols=99 Identities=15% Similarity=0.026 Sum_probs=72.9
Q ss_pred HHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012111 89 IKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQP----------EQASLLFEVMLSDGLKPSVDVYTALVSA 158 (471)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (471)
-+.+++++|++.++.+.+.. |.+...|..+..++...+++ ++|+..|++.++.... +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 46778888999999888876 67788888888888877664 4888888888876544 67778888888
Q ss_pred HHhcC-----------CHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012111 159 YGQSG-----------LLDEAFSTINDMKSVSDCKPDVYTYSILIK 193 (471)
Q Consensus 159 ~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (471)
|...| ++++|++.|++..+ +.|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 87664 77888888887776 2566555544433
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=8.6e-05 Score=56.95 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL----------IMKVDSILRQVENSDVILDTPFFNCIISAYG 407 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (471)
+.+.+++|...+++..+.. +-+...|..+..++...++ +++|+..|++.++.++. +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445666666666666653 3356666666666666554 45788888888777666 6777777888877
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 408 QAG-----------DVEKMGELFLTMKERHCVPDNITFATMIQ 439 (471)
Q Consensus 408 ~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 439 (471)
..| ++++|++.|++..+ +.|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 664 78888888888887 4677665544443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.0003 Score=65.86 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=86.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhC---CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHH
Q 012111 300 SYGRAGMYDKMRSVMDFMQKR---FFF---P-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-----G-MKP-NSITYC 365 (471)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~---~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~ 365 (471)
.+...|++++|..++++..+. -+. | ...+++.|...|...|++++|..++++.+.. | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888887766542 111 2 2346788888888888888888888876643 2 122 245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 366 SLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 366 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
.|...|...|++++|..++++..+ .|.. | ...+.+.+..++...|.+++|..+|+++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999988887653 3432 1 223455666777788889999999988876
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=4.2e-05 Score=55.50 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC------HHH
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD------TPF 398 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 398 (471)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..+. + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 34556667777777888888888888777653 335677777778888888888888888887776543 2 444
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 012111 399 FNCIISAYGQAGDVEKMGELF 419 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~ 419 (471)
+..+..++...|+++.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 555555555555555544433
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00024 Score=50.49 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 360 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
+...+..+...+...|++++|...|+++.+.++. +...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777777788888888888888877776655 566777777788888888888887777664
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00064 Score=46.90 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 362 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
..+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.. +-+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555544332 44455555555555666666666665555431 12334444444444
Q ss_pred H
Q 012111 442 N 442 (471)
Q Consensus 442 ~ 442 (471)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.0009 Score=46.12 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3455556666667777777777777766653 234566667777777777777777777777665443 45555555555
Q ss_pred HHh
Q 012111 406 YGQ 408 (471)
Q Consensus 406 ~~~ 408 (471)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00021 Score=50.73 Aligned_cols=66 Identities=21% Similarity=0.113 Sum_probs=41.2
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
|.+...+..+..++...|++++|...|+...+.... +...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344556666666666666777776666666665432 455666666666666777766666666554
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.41 E-value=0.00072 Score=47.67 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=55.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC
Q 012111 368 VSAYSKAGLIMKVDSILRQVENSDVILDTP-FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALG 445 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 445 (471)
...+...|++++|...++.+.+..+. +.. .+..+..+|...|++++|++.|++..+. .|+. ..+.. +
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------H
Confidence 44556677777777777777765544 555 6777777777777777777777777764 3332 22211 5
Q ss_pred CHHHHHHHHHHHHHhhhcCC
Q 012111 446 MTEAAQNLENKMIAMKENSG 465 (471)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~~~ 465 (471)
.+.++...+++.....|.+.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56667777777666666544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.018 Score=50.93 Aligned_cols=74 Identities=16% Similarity=0.037 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 012111 182 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 260 (471)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (471)
+.+..+|..+...+...|+++.|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 4566666666665666677777777777777664 56666666666777777777777777776654 45554443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.01 Score=52.45 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 395 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 45555555555555566666666666666542 555555555555666666666666666666665543
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.11 E-value=0.0052 Score=46.58 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGE 417 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 417 (471)
...+.+-|.+....| .++..+...+..++++.+ +++++..+++.+.+.+ +.-+...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445555565555554 356666666666677666 5556777777666654 21123444455556667777777777
Q ss_pred HHHHHHh
Q 012111 418 LFLTMKE 424 (471)
Q Consensus 418 ~~~~~~~ 424 (471)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.96 E-value=0.033 Score=56.23 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012111 260 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 339 (471)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (471)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555666666777776665542110 1122345567777777765432 2556777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 419 (471)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 419 (471)
|+++.|.++|.++.. |..+...+...|+.+...++.+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776543 33344444445555555554444444331 123333444455555555555
Q ss_pred HHH
Q 012111 420 LTM 422 (471)
Q Consensus 420 ~~~ 422 (471)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.94 E-value=0.0047 Score=43.31 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCC
Q 012111 402 IISAYGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 466 (471)
Q Consensus 402 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 466 (471)
....+...|++++|++.|+++.+.. +.+.. .+..+..++...|++++|.+.++++++..|+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 4567888999999999999998852 23566 8888889999999999999999999999887653
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.0034 Score=57.67 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMKER-----H-CVPD-NITFATMIQAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (471)
+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.|...|...|++++|..+++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 1 1121 23444555555555555555555555543
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.058 Score=54.44 Aligned_cols=154 Identities=13% Similarity=0.071 Sum_probs=90.6
Q ss_pred HHHHHhhcHHHHHH-HHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012111 86 DEAIKQKKWQLALK-IFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL 164 (471)
Q Consensus 86 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 164 (471)
......+++++|.+ ++..+. +......++..+.+.|..++|.++.+.-. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 34456777887766 442221 12223666777777788887776653211 11233456788
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012111 165 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 244 (471)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (471)
++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+
T Consensus 668 ~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 88887775433 3566788888888888888888888887642 3345555555666666555554
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 245 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (471)
.....+ -++....+|.+.|++++|.+++.+
T Consensus 732 ~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 732 DAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 443332 123334445556666666555544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.87 E-value=0.0048 Score=56.76 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcc--CccC----ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CC-CC
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQ--WYQA----RCQTFTKLMVMLGKCKQPEQASLLFEVMLSD-----GL-KP 147 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~~ 147 (471)
.+...+..+.++|++++|+++++.+.+.. .+.+ ...+++.+..+|...|++++|..++++.... |. .|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 33445566667777777777777776431 1112 1345666777777777777777776665431 21 12
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 148 S-VDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 148 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
+ ..+++.|...|...|++++|..++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 23466666666666666666666665443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.0085 Score=55.13 Aligned_cols=92 Identities=8% Similarity=-0.107 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-c-CHHH
Q 012111 333 IETFGKAGHIEKMEEYFKKMKHRG---MKP----NSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPF 398 (471)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~ 398 (471)
+..+...|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.+++++.. .|.. | ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344445566666666666665431 111 133555666666666666666666665442 1211 1 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 399 FNCIISAYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 399 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 424 (471)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666555
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.84 E-value=0.0099 Score=42.26 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 012111 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSD------VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 431 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 431 (471)
.+...+..|...+...|+++.|...|+.+.+.. -.+...++..|..++.+.|+++.|..+++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 455667788888888999999999888876421 1235677888888888999999999998888873 5654
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.80 E-value=0.0049 Score=56.68 Aligned_cols=86 Identities=5% Similarity=-0.134 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-c-CHHHHHHHHH
Q 012111 339 AGHIEKMEEYFKKMKHR---GMKP----NSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFNCIIS 404 (471)
Q Consensus 339 ~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~ 404 (471)
.|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++..+ .|.. | ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777888777776542 1112 245677888888888888888888877653 2322 1 2345788888
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 012111 405 AYGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~ 424 (471)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887764
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.019 Score=39.75 Aligned_cols=66 Identities=6% Similarity=-0.019 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 359 PNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
.++..+..+..++...++ .++|..++++..+.++. +......+...+...|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566666666654443 56777777777766655 6666666777777777777777777777664
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.61 E-value=0.018 Score=43.00 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 012111 410 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 463 (471)
Q Consensus 410 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 463 (471)
+|.++|.++|+.++..+-.- ...|....+--.+.|+.+.|++++.+.+.++|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44455555555444321111 444444444444555555555555555554443
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.18 Score=39.23 Aligned_cols=104 Identities=10% Similarity=-0.057 Sum_probs=66.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 012111 121 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 200 (471)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 200 (471)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34455677777777776655 2567777777777777777777777777654 3445555666677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 201 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 201 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
.+...++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6666655555554441 344445555667777777776544
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.53 E-value=0.048 Score=37.64 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=37.9
Q ss_pred cCChhHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 111 QARCQTFTKLMVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
+.+...+..+..++...++ .++|..++++..+.... ++.....+...+...|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555543332 46666666666655433 555666666666666666666666666665
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.031 Score=42.32 Aligned_cols=81 Identities=10% Similarity=-0.049 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 012111 309 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG---HIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSI 383 (471)
Q Consensus 309 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 383 (471)
.+.+-|....+.+. ++..+...+.-++++.+ +.++++.++++..+.. .| ....+-.+.-++.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444333333 34444444444445444 3345555555555442 12 233334444444555555555555
Q ss_pred HHHHHhCC
Q 012111 384 LRQVENSD 391 (471)
Q Consensus 384 ~~~~~~~~ 391 (471)
++.+.+..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 55555443
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.31 E-value=0.57 Score=46.98 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=35.6
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCH
Q 012111 230 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN--ILTKSYGRAGMY 307 (471)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~ 307 (471)
+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|....-. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH
Confidence 334455555555555444321 1112222222233334555555555555554321 12221111 222334455555
Q ss_pred HHHHHHHHHHHh
Q 012111 308 DKMRSVMDFMQK 319 (471)
Q Consensus 308 ~~a~~~~~~~~~ 319 (471)
....+++..+..
T Consensus 577 ~aIq~LL~~~~~ 588 (963)
T 4ady_A 577 SAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 555555555544
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.2 Score=38.95 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=58.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 380 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 380 (471)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 2456677777777777777777777665442 34444445556666665
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 381 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 422 (471)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 422 (471)
.++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555554444331 344444555667777777766443
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.04 E-value=0.28 Score=35.89 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=84.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012111 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 382 (471)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 382 (471)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ...|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345566666666555443 24445555555555555555555555544321 111 11222222222
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 012111 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 462 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (471)
.+-.+- .+....+..+..+...|+-+.-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.++.+.|.
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222111 1445566777788888888888888888544 2567888888888999999999999999999988775
Q ss_pred c
Q 012111 463 N 463 (471)
Q Consensus 463 ~ 463 (471)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.97 E-value=0.1 Score=36.85 Aligned_cols=69 Identities=10% Similarity=-0.080 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 325 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
+..-+..|...+...|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 44455667777788888888888888766531 1234567777888888888888888888888776544
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.88 E-value=0.22 Score=37.31 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 340 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
+++++|.++|+.+++.+-. -...|....+--.++|++..|.+++...+..++.
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 5666667777666554222 2555555556566667777777777776666655
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.87 E-value=0.078 Score=38.57 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=42.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHH
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK---VDSILRQVENSD-VILDTPFFNCIISAYGQAGDVE 413 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 413 (471)
.......+.+-|......| .++..+-..+..++.+..+... ++.+++.+.+.+ +.-.....-.|.-++.+.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 3334444555555444444 2555555555555555554443 555555555543 1112233334444555666666
Q ss_pred HHHHHHHHHHh
Q 012111 414 KMGELFLTMKE 424 (471)
Q Consensus 414 ~a~~~~~~~~~ 424 (471)
+|.+.++.+.+
T Consensus 92 ~A~~~~~~lL~ 102 (126)
T 1nzn_A 92 KALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665555
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.72 E-value=0.39 Score=35.14 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
....+..+...|+-++..+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555555555555555554332 245555555555555555555555555555555554
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.47 E-value=0.068 Score=45.30 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCH
Q 012111 342 IEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDV 412 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 412 (471)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+.++.-+..++..+...+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56777777777774 555 45778888888874 88888888888888876643577777778878774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 413 EKMGELFLTMKERHCV--PDNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 413 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
+++.+.+++....... |+....+.+ .-++|..++.++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 8888888888876554 554333332 335555555544
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.44 E-value=0.22 Score=42.20 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 012111 307 YDKMRSVMDFMQKRFFFPT---VVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA-GLI 377 (471)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 377 (471)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56777788888775 444 55788888889884 99999999999999864222477888888888885 999
Q ss_pred HHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 378 MKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 378 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
+++.+.+++.....+. |+....+.+- -.+|..++.+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHhH
Confidence 9999999999998877 6655444433 345666655443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.36 E-value=0.27 Score=35.74 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=59.6
Q ss_pred HHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 012111 86 DEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQ---ASLLFEVMLSDGLK-PSVDVYTALVSAYGQ 161 (471)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 161 (471)
+.-........+.+-|......+ .++..+-..+..++.+.++... ++.+++.+...+.+ ......-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 33344555556666666665554 4777777777778888776665 77788887765311 133444456667788
Q ss_pred cCCHHHHHHHHHHhhc
Q 012111 162 SGLLDEAFSTINDMKS 177 (471)
Q Consensus 162 ~~~~~~a~~~~~~~~~ 177 (471)
.|++++|.+.++.+.+
T Consensus 87 lg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ 102 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888888888888876
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.80 E-value=3.8 Score=41.22 Aligned_cols=303 Identities=8% Similarity=-0.041 Sum_probs=166.3
Q ss_pred HHHHHHHHhcCCCHHHH-H-HHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHH--HHHHH
Q 012111 117 FTKLMVMLGKCKQPEQA-S-LLFEVMLSDGLKPSVDVYTA-LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY--TYSIL 191 (471)
Q Consensus 117 ~~~l~~~~~~~~~~~~a-~-~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l 191 (471)
-..+..++...|--... . ...+++.+. . +-.-+.+ .--+.+..|+.++++.++....... ...+.. .=..+
T Consensus 342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAll 417 (963)
T 4ady_A 342 AVSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLY 417 (963)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHH
Confidence 34556666666633221 1 122344443 2 3333333 3345777899999998888766411 122333 33333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCCHH--HHHH
Q 012111 192 IKSCTKFHRFDLIEKILAEMSYLGI-------ECSAVTYNTIIDGYGKAKK-FEEMESSFSAMVESGGCHPDIF--TLNS 261 (471)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~~ 261 (471)
.-+....|..+.+..++.......- .+....-..+.-+++-.|. -+++.+.+..+.... ..... .-..
T Consensus 418 aLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalA 495 (963)
T 4ady_A 418 GLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND--SATSGEAAALG 495 (963)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHH
Confidence 3445566665678887776654321 0112223334344443443 245566666665532 11111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHH
Q 012111 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS--YGRAGMYDKMRSVMDFMQKRFFFPTVVTYN---IVIETF 336 (471)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~ 336 (471)
|...+...|+.+....++..+.+. .+..+...+..+ +...|+.+.+..+.+.+... ..|.. -|. .+.-+|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAy 570 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAY 570 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHT
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHh
Confidence 344566778888888888887653 233444444444 44678999999998888764 22222 233 233456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-HHH
Q 012111 337 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV-EKM 415 (471)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a 415 (471)
+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 77889888777999888752 2233333333344555777777777777666543 34444444444455555543 578
Q ss_pred HHHHHHHHhCCCCCCHHHHH
Q 012111 416 GELFLTMKERHCVPDNITFA 435 (471)
Q Consensus 416 ~~~~~~~~~~~~~p~~~~~~ 435 (471)
++++..+... +|..+-.
T Consensus 649 id~L~~L~~D---~d~~Vrq 665 (963)
T 4ady_A 649 IDVLDPLTKD---PVDFVRQ 665 (963)
T ss_dssp HHHHHHHHTC---SSHHHHH
T ss_pred HHHHHHHccC---CCHHHHH
Confidence 8888888752 4544433
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.22 E-value=0.53 Score=32.28 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439 (471)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 439 (471)
+.-+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+..+.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455556666666666677777777777777777777777777666543 2233344554443
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.06 E-value=0.9 Score=41.03 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-----RHCVPDNITFATMI 438 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 438 (471)
...++..+...|+.+++...+..+....+- +...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566667777777777777777666544 677777778888888888888777776643 47777776644433
Q ss_pred H
Q 012111 439 Q 439 (471)
Q Consensus 439 ~ 439 (471)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.98 E-value=0.65 Score=33.93 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012111 358 KPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 430 (471)
.|+..+--.+..++.+..+. .+++.+++.+.+.++.-....+-.|.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 45666655666666666543 35666666666554322344455566667777777777777777766 3454
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.87 E-value=3.9 Score=37.62 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012111 163 GLLDEAFSTINDMKSV----SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 213 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (471)
|+++.|++.+..+.+. .+..........++..|...++++...+.+.-+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766554431 23344555667777777777777777666655543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.85 E-value=3.4 Score=43.41 Aligned_cols=131 Identities=7% Similarity=0.003 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 404 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (471)
|..++..+.+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+.+... -...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 455555566666666666555554443211111 1355566666666666666666655554432 2344555555
Q ss_pred HHHhcCCH------------HHHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhh
Q 012111 405 AYGQAGDV------------EKMGELFLTMKE-R-HCVPDNITFATMIQAYNALGMTEAA-QNLENKMIAMK 461 (471)
Q Consensus 405 ~~~~~g~~------------~~a~~~~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~~ 461 (471)
.++..|.. ++..+++..-.+ . .+...+.-|..|-.-+...|++..| .-+|+.+.+.+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 55544433 333333322111 1 0111223344555555666666655 44555555544
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.58 E-value=1.6 Score=32.31 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012111 358 KPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 430 (471)
.|+..+--.+..++.+..+. .+++.+++.+.+.++.-.....-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 45666666666666666543 35666666666554432344444555667777777777777777776 3554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.51 Score=46.29 Aligned_cols=53 Identities=17% Similarity=-0.054 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
...|...|+++.|+++-++.... .| +..+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456678888888888877764 44 4677888888888888888887777665
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.08 E-value=0.43 Score=43.16 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc----CCCCCCCHHHHH
Q 012111 117 FTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----VSDCKPDVYTYS 189 (471)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 189 (471)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. ..|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4455666667777777777777766543 33666777777777777777777777766543 246777776543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.97 E-value=1.9 Score=32.98 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCCh-------hHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 012111 78 PKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARC-------QTFTKLMVMLGKCKQPEQASLLFEVML 141 (471)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 141 (471)
...+.+-++.+...+.++.|+-+.+.+......+++. .++..+.+++...|++..|...|++.+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3466777888889999999988888766543123332 366778888899999999999998854
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.89 E-value=7 Score=37.60 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012111 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193 (471)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (471)
...-..-+..+.+.+++......+.. .+.+...-+....+....|+..+|......+-... ......+..++.
T Consensus 72 ~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~ 144 (618)
T 1qsa_A 72 RTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFS 144 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHH
Confidence 33445555666667777666654432 13455666666777777787777766666655422 223344555666
Q ss_pred HHHhcCC
Q 012111 194 SCTKFHR 200 (471)
Q Consensus 194 ~~~~~~~ 200 (471)
.+.+.|.
T Consensus 145 ~~~~~g~ 151 (618)
T 1qsa_A 145 VWRASGK 151 (618)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6665443
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.59 E-value=1.3 Score=32.20 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 376 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 439 (471)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 439 (471)
|.-+..+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-.+.+ +.+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 33445566666667777777777777777777777777777777776654 3344445655554
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.37 E-value=1.7 Score=29.82 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012111 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193 (471)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (471)
+.-+..+-++.+......|++.+..+.+++|-+.+++..|+++|+.++..- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 556778888888888888899999999999999999999999998887633 333445655554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.34 E-value=4.8 Score=42.28 Aligned_cols=87 Identities=7% Similarity=-0.005 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297 (471)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (471)
.-|..++..+.+.+.++.+.++-....+..+..++ ...|..+.+.+...|++++|...+-.+.... .-......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 45777888888888888888887777665322221 1257788888889999999988887776543 335567777
Q ss_pred HHHHHHcCCHHH
Q 012111 298 TKSYGRAGMYDK 309 (471)
Q Consensus 298 l~~~~~~~~~~~ 309 (471)
+...|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777666543
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.11 E-value=1.6 Score=42.95 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcC-----CCCCC-CH--
Q 012111 116 TFTKLMVMLGKCKQ-PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-LLDEAFSTINDMKSV-----SDCKP-DV-- 185 (471)
Q Consensus 116 ~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~-----~~~~~-~~-- 185 (471)
....++..+.-.++ ++.|..+|+.+.......+......++..+...+ +--+|.+++.+..+. ....+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556666666666 5789999999887632212222233333333333 223455555444320 01111 11
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 186 --------YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 186 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
.....=...|...|+++.|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222334667899999999999988763 556889999999999999999999988877
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.88 E-value=9.6 Score=35.00 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHHHhhhcc
Q 012111 76 LWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQ 108 (471)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~ 108 (471)
.+...+...+..+...|+|+...+.+..+....
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr 86 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH 86 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 344556667777777777777766666665543
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.84 E-value=3.1 Score=30.39 Aligned_cols=69 Identities=7% Similarity=-0.084 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 012111 324 PTVVTYNIVIETFGKAGH---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 392 (471)
Q Consensus 324 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 392 (471)
|+..+--.+.-++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 444443334444444433 334555555555543111233444455556666666666666666665443
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.69 E-value=3.6 Score=30.02 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 012111 129 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 193 (471)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (471)
+.-+..+-++.+....+.|++.+....+++|-+.+++..|+++|+.++..- .+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 455677888888888888999999999999999999999999999888633 344445665554
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.64 E-value=0.00013 Score=65.86 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (471)
+|..+.+++..+-+.|.+++-++.+..+++. ..++..=+.|+-+|++.++..+..+++ -.|+..-...+.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 4455666666666777777777777666654 233344456777777777655533322 124444455566
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 012111 157 SAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~ 177 (471)
+-|...|.++.|.-+|..+..
T Consensus 152 Drcf~e~lYeAAKilys~isN 172 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSN 172 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCC
T ss_pred HHHHHccCHHHHHHHHHhCcc
Confidence 666667777666666655443
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.88 E-value=1.9 Score=35.97 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=72.9
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 012111 85 LDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLK--PSVDVYTALVSAYGQS 162 (471)
Q Consensus 85 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~ 162 (471)
+..+.+.|++++|++....-.+.. |.|...-..++..+|-.|+++.|.+-++...+.... |....|..+|++=
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH---
Confidence 345668899999999888888775 778888889999999999999999988888775322 1223444444431
Q ss_pred CCHHHHHHHHHHhhcCCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 012111 163 GLLDEAFSTINDMKSVSDCKP-----DVYTYSILIKSC--TKFHRFDLIEKILAEMSYL 214 (471)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~ 214 (471)
..=.++.. .+-.| ...-...++.+. ...|+.+.|..+-+++.+.
T Consensus 79 -------~~R~~vfa-G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -------QARKDFAQ-GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHTT-SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111221 11111 122334444443 3457888877777776543
No 256
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.61 E-value=2.1e-05 Score=70.77 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 255 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 334 (471)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 334 (471)
++.||..+-.+|...+.+.-|.-.--.++-.. | -...++..|...|-+++.+.+++.-... -......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 33455555566666665554443333222111 0 1122444555555565555555544421 1124444555544
Q ss_pred HHHh
Q 012111 335 TFGK 338 (471)
Q Consensus 335 ~~~~ 338 (471)
.|++
T Consensus 272 LYsK 275 (624)
T 3lvg_A 272 LYSK 275 (624)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 4444
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.03 E-value=7.3 Score=29.77 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=14.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
.-..+..+|.+.+++++|+.+++.+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 3344556666666666666665554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.90 E-value=8.9 Score=28.44 Aligned_cols=71 Identities=7% Similarity=-0.105 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 012111 323 FPTVVTYNIVIETFGKAGH---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 393 (471)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (471)
.|+..+--.+.-++++..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554455555555543 3456667776666532223344455556677777777777777777765543
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.78 E-value=19 Score=31.30 Aligned_cols=83 Identities=7% Similarity=-0.008 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 359 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
-|+.....+...|.+.+++.+|...|- . +-.+....|..++.-+...+...+ ++...-.++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV- 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV- 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH-
Confidence 366677777788888888877777662 1 222223455444443333322111 112222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 012111 439 QAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
--|.-.++...|..+++...+.
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3456677888887777776653
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.09 E-value=5.2 Score=33.44 Aligned_cols=120 Identities=8% Similarity=0.053 Sum_probs=81.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCC
Q 012111 334 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIISAYGQAGD 411 (471)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 411 (471)
....+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+.++.. ....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 45678899999999999888874 5588888899999999999999999999988765431 12233333332
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhhhcC
Q 012111 412 VEKMGELFLTMKERHCVP-----DNITFATMIQAY--NALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 412 ~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+..=.+...-+-.| ...-...++.++ ...|+.++|.++-..+.+..|..
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22112222222222 233344566655 45699999999999998886543
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.88 E-value=29 Score=29.92 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS---GNIEKMEKWYNEFNLMGVKADIQTLN 295 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (471)
++.....+...|.+.|++.+|+.-|-.- ...+...+..++.-+... |...++--++. .
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~-----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------R 193 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLG-----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------R 193 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------H
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------H
Confidence 6777778888888888888888766421 111344555555444433 43333221111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 012111 296 ILTKSYGRAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~ 318 (471)
. +--|.-.++...|..+++...
T Consensus 194 a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred H-HHHHHHhcCHHHHHHHHHHHH
Confidence 2 223445677777777776553
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.80 E-value=12 Score=25.58 Aligned_cols=78 Identities=9% Similarity=0.000 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (471)
..++|.-+-+.+...|. ...+--+-+..+...|++++|..+.+.. +.||...|.+|.. .+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45555555555555432 1111112223345566666666554433 4566655555443 3556666666666
Q ss_pred HHHHhCC
Q 012111 280 NEFNLMG 286 (471)
Q Consensus 280 ~~~~~~~ 286 (471)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555544
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.31 E-value=13 Score=25.53 Aligned_cols=78 Identities=9% Similarity=-0.001 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 200 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 279 (471)
Q Consensus 200 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (471)
..++|.-+-+.+...|. ...+--+-+..+...|++++|..+.+.. +.||...|.+|.. .+.|-.+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45556555555555442 1111112223445566666666655444 4566666655543 3556666666666
Q ss_pred HHHHhCC
Q 012111 280 NEFNLMG 286 (471)
Q Consensus 280 ~~~~~~~ 286 (471)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555544
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.86 E-value=12 Score=34.05 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012111 115 QTFTKLMVMLGKCKQPEQASLLFEVMLSD--GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
.++..+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35566777777777777777777777654 2222345566666777777777777666666543
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.43 E-value=20 Score=32.75 Aligned_cols=98 Identities=11% Similarity=-0.142 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCCHHH--HH
Q 012111 187 TYSILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFT--LN 260 (471)
Q Consensus 187 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~--~~ 260 (471)
+...+...|.+.|+++.|.+.+.++... +..--...+-.+++.+...+++..+...+.++.... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3445555666666666666666666543 112224455566666666666666666666654321 11222111 00
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 012111 261 SMISAYGNSGNIEKMEKWYNEFNL 284 (471)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~ 284 (471)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123345667777666665543
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.18 E-value=15 Score=25.16 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 215 (471)
+...|++++|..+.+.+. .||...|..|-. .+.|-.+.+..-+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555444322 355555444332 24455555555554555444
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.63 E-value=16 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012111 159 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 215 (471)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 215 (471)
+...|++++|..+.+.+. .||...|..|-. .+.|-.+.+...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555444332 345444443322 24444444444444444443
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.78 E-value=36 Score=29.95 Aligned_cols=212 Identities=12% Similarity=0.080 Sum_probs=108.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012111 222 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--IEKMEKWYNEFNLMGVKADIQTLNILTK 299 (471)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 299 (471)
....++.-|...++.++|...++++.. ... .......++......++ .+.+-.++..+.. ++-+.......+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~-p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC-CGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC-chh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 456778888899999999999988731 111 12223333433333332 2345555666553 44444444444444
Q ss_pred HHHHcCCH----HHHHHHHH----HHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HH-------------
Q 012111 300 SYGRAGMY----DKMRSVMD----FMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KH------------- 354 (471)
Q Consensus 300 ~~~~~~~~----~~a~~~~~----~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~------------- 354 (471)
.+....+. ..|..++- ++...+ +.|... ..... .. ....+.+++++. ..
T Consensus 132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l-~~~~~----~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG 205 (358)
T 3eiq_C 132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYI-DSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWG 205 (358)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTT-GGGC--------CCHHHHHHHHHHHHHHTC---------CCC
T ss_pred HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHH-HHHhh----cc-cchHHHHHHHHHHHHHhccchHHHHHHhcC
Confidence 44333322 12333222 222222 222211 11000 00 111222222211 11
Q ss_pred --cCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 012111 355 --RGMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHC 427 (471)
Q Consensus 355 --~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~ 427 (471)
.|..|. ......++.=|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+...|+
T Consensus 206 ~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 206 SGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 022232 223577888899999999999999998643322 23444555555555443 4568888888888777
Q ss_pred CCCHHHHHHHHHHHHhc
Q 012111 428 VPDNITFATMIQAYNAL 444 (471)
Q Consensus 428 ~p~~~~~~~l~~~~~~~ 444 (471)
-+.......+.+.+...
T Consensus 285 ls~~q~~~Gf~~vl~~l 301 (358)
T 3eiq_C 285 ITIDQMKRGYERIYNEI 301 (358)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 66665555555544443
No 269
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=74.13 E-value=19 Score=29.48 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcc-CccC----ChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQ-WYQA----RCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA 154 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (471)
....-|+.+....++++|+++.+...+.- ..+. ........+..-.....-.-+..+.+.+.. ..+......
T Consensus 20 ~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~ 96 (235)
T 2d2s_A 20 EGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKS 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHH
Confidence 44566888889999999999998776531 0111 112222233333333333344444444422 345555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc
Q 012111 155 LVSAYGQSGLLDEAFSTINDMKS 177 (471)
Q Consensus 155 li~~~~~~~~~~~a~~~~~~~~~ 177 (471)
.+..+.+.|+.++|.++|-+...
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHH
Confidence 66777777777777777755543
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.38 E-value=47 Score=28.61 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012111 360 NSITYCSLVSAYSKAGLIMKVDSIL 384 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~a~~~~ 384 (471)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5566666667777777776666654
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=70.14 E-value=52 Score=28.25 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012111 364 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHCVPDNITFATMIQAY 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 441 (471)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+.+++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456788888899999999999988632222 23334444445544333 456677888887766655555444444443
Q ss_pred H
Q 012111 442 N 442 (471)
Q Consensus 442 ~ 442 (471)
.
T Consensus 248 ~ 248 (307)
T 2zu6_B 248 N 248 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.53 E-value=82 Score=30.28 Aligned_cols=271 Identities=9% Similarity=0.019 Sum_probs=122.2
Q ss_pred HHHHHhhhhhhccCCCchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 012111 62 KNIEKKVSSKKYKNLWPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVML 141 (471)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 141 (471)
..+...+...+..+.....-...+..+.+.++|...+.++.. .+.+...-.....+....|+..+|......+-
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW 129 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 344444444433333333334556666677788777765432 14455555666667777788777777666665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHhhcCC----------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 012111 142 SDGLKPSVDVYTALVSAYGQSGLLDE--AFSTINDMKSVS----------DCKPDVY-TYSILIKSCTKFHRFDLIEKIL 208 (471)
Q Consensus 142 ~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~----------~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 208 (471)
..|.. .+..+..++..+.+.|.+.. ...=++.+.... .+.++.. ....++.... +...+....
T Consensus 130 ~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~ 205 (618)
T 1qsa_A 130 LTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA 205 (618)
T ss_dssp SCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH
T ss_pred hCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHH
Confidence 55432 34456666666665553322 222222222100 0111111 0111111111 111111111
Q ss_pred HHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHH
Q 012111 209 AEMSYLGIECSAVT---YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN----SMISAYGNSGNIEKMEKWYNE 281 (471)
Q Consensus 209 ~~~~~~g~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 281 (471)
. . +.++... +...+.-+.+ .+.+.|...+....+.... +..... .+...+...+...++...+..
T Consensus 206 ~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~ 277 (618)
T 1qsa_A 206 R---T--TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDD 277 (618)
T ss_dssp H---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred h---c--cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHh
Confidence 1 0 1122211 1111222222 3667777777666544322 222222 122222333423444555554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 282 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 353 (471)
Q Consensus 282 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (471)
.... ..+.......+....+.|+++.|...|..|...... ...-.--+..++...|+.++|..+|..+.
T Consensus 278 ~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 278 AIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4332 233333444444445667777777777766543111 22223344556666777777777776654
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.74 E-value=42 Score=26.61 Aligned_cols=54 Identities=7% Similarity=0.122 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012111 306 MYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 359 (471)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 359 (471)
....+..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34556666666655554332 2345555555566666666666666666655555
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.58 E-value=66 Score=28.81 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHH-
Q 012111 149 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV---YTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTY- 223 (471)
Q Consensus 149 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~- 223 (471)
......|...|.+.|+.++..+++.......+.-+-. .....++..+.... ..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456678888888999988888888776533323332 23556666665533 333333333333221000 11111
Q ss_pred -----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 012111 224 -----NTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQ 292 (471)
Q Consensus 224 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 292 (471)
..++..|...|++.+|.+++..+.+.-....| ...|..-+..|...++...+...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 24666777777777777777666554211111 123444455566666776666666655322 1223332
Q ss_pred HHHHH----HHHHH-HcCCHHHHHHHHHHH
Q 012111 293 TLNIL----TKSYG-RAGMYDKMRSVMDFM 317 (471)
Q Consensus 293 ~~~~l----l~~~~-~~~~~~~a~~~~~~~ 317 (471)
....+ ...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22111 11233 456666666655444
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.32 E-value=47 Score=26.31 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 012111 342 IEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 394 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (471)
...+.++|..|...|+--. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555544332 3345555555555566666666555555554444
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.59 E-value=68 Score=27.89 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 219 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 298 (471)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 298 (471)
++.....+...|.+.+++.+|+.-|- . |..++...|..++.-+...+...+ .+...-..++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 56677777888888888888877662 1 123334566555544444333221 1222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 012111 299 KSYGRAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~ 318 (471)
-|...++...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3445567777777665544
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.34 E-value=41 Score=25.28 Aligned_cols=106 Identities=14% Similarity=0.292 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--IMKVDSILRQVENSDVILDTPFFNCIISA 405 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (471)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+.+.++-+. ..+..+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~----~q~~~G 85 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI----DQMKRG 85 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH----HHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH----HHHHHH
Confidence 4567888899999999999999988532111 22334445555555332 3456677777776665532 223333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCC
Q 012111 406 YGQAGDVEKMGELFLTMKERHCVPDNITFAT-MIQAYNALGM 446 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~ 446 (471)
+ ....+.++.+.-. .|+...+.. ++..+...|-
T Consensus 86 f------~~vl~~ldDl~lD--iP~A~~~la~~v~~ai~~g~ 119 (152)
T 2ion_A 86 Y------ERIYNEIPDINLD--VPHSYSVLERFVEECFQAGI 119 (152)
T ss_dssp H------HHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTC
T ss_pred H------HHHHHhChHhccC--ccchHHHHHHHHHHHHHCCC
Confidence 2 2233334444321 367665543 4444444443
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.66 E-value=62 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHcCC
Q 012111 290 DIQTLNILTKSYGRAGM 306 (471)
Q Consensus 290 ~~~~~~~ll~~~~~~~~ 306 (471)
+..+-...+.++.+.+.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333344444444443
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.20 E-value=73 Score=26.07 Aligned_cols=90 Identities=7% Similarity=-0.107 Sum_probs=49.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012111 297 LTKSYGRAGMYDKMRSVMDFMQKR--FFFP----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 370 (471)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 370 (471)
-++.+....++++|..++++..+. +..+ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 477778888888888888766542 1111 0011122222222222233333444444 22 4455666677777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 012111 371 YSKAGLIMKVDSILRQVEN 389 (471)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~ 389 (471)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7788888888877766553
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.63 E-value=1.4e+02 Score=28.91 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHh
Q 012111 79 KPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLG 125 (471)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (471)
..+...+-.|.+.|.+++|.++.+.....- ..-...+...+..|+
T Consensus 153 ~p~Wa~IyY~LR~G~~~~A~e~~~~~~~~~--~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 153 VPIWALIFYLLRAGLIKEALQVLVENKANI--KKVEQSFLTYFKAYA 197 (661)
T ss_dssp EEHHHHHHHHHTTTCHHHHHHHHHHTGGGC-------CHHHHHHHC-
T ss_pred cccHHHHHHHHhcCCHHHHHHHHHHhhhhH--hhhhHHHHHHHHHHH
Confidence 346677777788888888888777665431 111234455555555
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.32 E-value=52 Score=23.84 Aligned_cols=65 Identities=15% Similarity=0.335 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 012111 328 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--IMKVDSILRQVENSDVI 393 (471)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 393 (471)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.++-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566788888889999998888887522111 12334444455555432 34566777777766654
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.22 E-value=38 Score=25.47 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH
Q 012111 132 QASLLFEVMLSDGLKP-SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185 (471)
Q Consensus 132 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (471)
++..+|..|..+|+-- -...|......+...|++.+|.++|+.-.+ .+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 3888899888887654 355677888888888999999999988777 4455543
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.64 E-value=46 Score=25.38 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH
Q 012111 132 QASLLFEVMLSDGLKPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185 (471)
Q Consensus 132 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (471)
.+..+|..|..+|+--. ...|......+...|++.+|.++|..-.+ .+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHH
Confidence 36667887777766433 45566777777777888888888877776 4445544
No 284
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.52 E-value=62 Score=23.95 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=16.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
..+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333444555555544443344444444444444444
No 285
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.01 E-value=67 Score=23.96 Aligned_cols=41 Identities=5% Similarity=0.028 Sum_probs=16.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012111 405 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 445 (471)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 445 (471)
.+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333333444444444444333333433333334443333
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.14 E-value=67 Score=24.10 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCC
Q 012111 80 PVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCK--QPEQASLLFEVMLSDGLK 146 (471)
Q Consensus 80 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~ 146 (471)
.+...|..+...|+.++|.+.++.+.... -....+...+..++-+.+ ..+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~--f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566788888899999999998885321 122233444444555432 245667777777766654
No 287
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.09 E-value=68 Score=23.40 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 317 MQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
+.+.|..++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4445555444322 2334444443 4455666666666655455555555555555555543
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.05 E-value=70 Score=23.66 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 352 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 352 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|...-+..+..
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 34444444432 222333333333344445555555444433333333333333333
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.97 E-value=1.9e+02 Score=29.55 Aligned_cols=138 Identities=12% Similarity=-0.006 Sum_probs=82.7
Q ss_pred CchHHHHHHHHHHHhhcHHHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 77 WPKPVLEALDEAIKQKKWQLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALV 156 (471)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (471)
.+......+..+...|.++.|.++..++. .+...-..+..+|...|++++|...|++.- .|+..+.....
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~--- 878 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA--- 878 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG---
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc---
Confidence 34455567788888999988877665554 344444567888999999999999998754 23321110000
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHc
Q 012111 157 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA----VTYNTIIDGYGK 232 (471)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~ 232 (471)
.......++..... ......-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..+.++.+.
T Consensus 879 -------~~~~~~~ll~~~e~---~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 879 -------VLREFQEIAEKYHH---QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp -------GGHHHHHHHHHTTT---CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred -------chhhhhhccCcccc---cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 01112222322221 1223346788888888888888888887777754222232 356667776665
Q ss_pred cC
Q 012111 233 AK 234 (471)
Q Consensus 233 ~~ 234 (471)
.|
T Consensus 949 ~g 950 (950)
T 4gq2_M 949 AG 950 (950)
T ss_dssp HC
T ss_pred CC
Confidence 44
No 290
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.19 E-value=59 Score=24.11 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 342 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 342 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555554444444444444444444444
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.46 E-value=1e+02 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 012111 373 KAGLIMKVDSILRQVENSDVIL--DTPFFNCIIS-A-----YGQAGDVEKMGELFLTMKE 424 (471)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 424 (471)
..|++-+|.++|+.+=.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477888888877776554444 4556666666 2 2457899999999888765
No 292
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=44.34 E-value=2.7e+02 Score=28.30 Aligned_cols=159 Identities=10% Similarity=0.030 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012111 295 NILTKSYGRAGMY---DKMRSVMDFMQKRF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 367 (471)
Q Consensus 295 ~~ll~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 367 (471)
..++...|..|.. +.|.+.|+.....+ +.|+.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4456667777764 46677777665432 445543 222333345677666666666666542 44445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Q 012111 368 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDVEKMGELFLTMKE---RHCVPDNITFATMIQAYNA 443 (471)
Q Consensus 368 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~ 443 (471)
+.+++...+.....++++.+...+.......... +.+.... ...+.|.+.+.+=-+ ..+......+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~-~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATST-INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHH-HHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 7888888888888888877665432222233332 3333322 223444554433211 1122233345566666555
Q ss_pred cCCHHHHHHHHHHHHH
Q 012111 444 LGMTEAAQNLENKMIA 459 (471)
Q Consensus 444 ~g~~~~A~~~~~~m~~ 459 (471)
.-..++-.+-++...+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 4444444444444443
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.57 E-value=8.2 Score=32.07 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=16.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 012111 438 IQAYNALGMTEAAQNLENKMIAMKENS 464 (471)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~~ 464 (471)
+...++.|+.+-+..++++-....+.+
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHhCCCccccc
Confidence 344567788887777777665555443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.48 E-value=91 Score=22.54 Aligned_cols=66 Identities=12% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 012111 293 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYFKKMKHRGMKP 359 (471)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 359 (471)
....++.-|...|+.++|.+.++.+....+. .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3566778888888888888888776532111 22333444444444432 355667777776666443
No 295
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.27 E-value=69 Score=23.87 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 316 FMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.+.+.|..++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34455555444322 2333333333 4445666666666655455555555555555555544
No 296
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.27 E-value=18 Score=22.00 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=20.3
Q ss_pred hhcHHHHHHHHHHhhhccCccCChh
Q 012111 91 QKKWQLALKIFGLLRQQQWYQARCQ 115 (471)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (471)
.-+++.|+..|..+...+.+||+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4588999999999988776787653
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.23 E-value=1e+02 Score=23.10 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 012111 275 MEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324 (471)
Q Consensus 275 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 324 (471)
+..+|..|...|+-. -...|......+...|++.+|..+|..-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444444444322 22334444444444455555555554444444333
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.60 E-value=1.1e+02 Score=22.83 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 316 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345556554433 2334455555555667777777777766566666766666666666643
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.56 E-value=60 Score=24.07 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
.-.|.++++.+.+.++..+..|.-.-+..+..
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 33455555555544444344333333333333
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.59 E-value=73 Score=23.21 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=31.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 351 KMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 351 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 345556665544 233444444444 455666666666666555555554444455554443
No 301
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.94 E-value=38 Score=28.11 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=3.9
Q ss_pred HHHHHHHHcC
Q 012111 347 EYFKKMKHRG 356 (471)
Q Consensus 347 ~~~~~m~~~~ 356 (471)
++++.+.+.|
T Consensus 200 ~i~~~Ll~~g 209 (285)
T 1wdy_A 200 AITHLLLDHG 209 (285)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 3333344443
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.68 E-value=87 Score=23.73 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=17.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAG 305 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 305 (471)
..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 40 ~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 40 KTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3333334444444444444433 33333333333334444433
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.84 E-value=1.4e+02 Score=23.52 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
+-.+.+.|+-.+.+|++.| .|....-..++.+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567888888888888887 554333334444443333
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.84 E-value=83 Score=23.87 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhccCccCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 012111 95 QLALKIFGLLRQQQWYQARCQTFTKLMVMLGKCKQPEQASLLFEVMLSD--GLKPSVDVYTALVSAYGQSGL 164 (471)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~ 164 (471)
+.+++-+....+..|+..+. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44455454444444455543 3455566666666777777787777766 555566555555566666653
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.17 E-value=70 Score=25.81 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCH
Q 012111 131 EQASLLFEVMLSDGLKPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 185 (471)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 185 (471)
+.+..+|..|...|+--. ...|......+...|++.+|.++|+.-.+ .+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 578899999999987544 56688888999999999999999999877 4555643
No 306
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.78 E-value=25 Score=21.31 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 012111 237 EEMESSFSAMVESGGCHPDIFTLNSMISAY 266 (471)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (471)
++|++.|.+|++..++.|+- +|...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~w-sweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW-SFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC-cHHHHHHHh
Confidence 56777777777776555553 666666655
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.51 E-value=2.4e+02 Score=25.81 Aligned_cols=71 Identities=8% Similarity=0.084 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 012111 214 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 286 (471)
Q Consensus 214 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (471)
.|++--...|..-...+...|++++|.++-..... |+-.+..|.+.+-.+=..-|+..-.+.+|..+.+.|
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34443444455555555566666666655443321 234444444444433333344444455555554444
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.43 E-value=1.3e+02 Score=22.75 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHh
Q 012111 406 YGQAGDVEKMGELFLTMKERHCVP--DNITFATMIQ-A-----YNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~~ 460 (471)
+...|++-+|-++|+..=...-.+ +...|..||+ . ..+.|+.+.|..++.+....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445599999999999886543345 5567777777 2 24679999999999999874
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.25 E-value=3.2e+02 Score=27.92 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcC
Q 012111 221 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI----FTLNSMISAYGNSG 270 (471)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 270 (471)
.-|..++..+-+.+.++-+.++-+..++.-. ..|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 3678899999999999999999888876531 2232 35777777766544
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.17 E-value=76 Score=23.65 Aligned_cols=59 Identities=8% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012111 351 KMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410 (471)
Q Consensus 351 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 410 (471)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344555555543 223333333333 44456666666655554444444444444444444
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.15 E-value=79 Score=25.31 Aligned_cols=181 Identities=8% Similarity=-0.029 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 012111 262 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQT--LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT--YNIVIETFG 337 (471)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~ 337 (471)
.+...+..|+.+.+..+++.+...+..++... -...+...+..|+.+-+.. +.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL----LVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH----HHHcCCCccccCCCCCCHHHHHH
Confidence 34556778999988888887776665554321 1234455566777654444 444555443221 122344456
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH---HHHHHHHHHhcCC
Q 012111 338 KAGHIEKMEEYFKKMKHRGMKP---NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---FNCIISAYGQAGD 411 (471)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 411 (471)
..|+.+-+..+++.....++.+ +....+ .+...+..|+.+-. +.+.+.|..++... -.+.+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 6777766655555433211122 112222 23334455665544 44444454433211 1233344456677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 012111 412 VEKMGELFLTMKERHCVPDNIT--FATMIQAYNALGMTEAAQNLEN 455 (471)
Q Consensus 412 ~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 455 (471)
.+-+. .+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 163 ~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 65444 4445566554322 1234455567777765554443
No 312
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=36.54 E-value=2.3e+02 Score=25.28 Aligned_cols=301 Identities=7% Similarity=-0.015 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCCHH--
Q 012111 114 CQTFTKLMVMLGKCKQPEQASLLFEVMLSD-GLKP---SVDVYTALVSAYGQSG-LLDEAFSTINDMKSVSDCKPDVY-- 186 (471)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~-- 186 (471)
......|...|.+.|+.++..+++...... +.-+ .......++..+.... ..+.-.++..+..+...-.--..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999887543 1122 2345667888887653 34444444444332100011111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCCHHH
Q 012111 187 --TYSILIKSCTKFHRFDLIEKILAEMSYL--GIECS---AVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFT 258 (471)
Q Consensus 187 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 258 (471)
.=.-++..|...|++.+|.+++..+.+. ..... ..++..-++.|...+++.++...+........ +.++...
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1225788899999999999999888763 11111 34566667889999999999999988754321 2244433
Q ss_pred HHHH----HHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHH
Q 012111 259 LNSM----ISAYG-NSGNIEKMEKWYNEFNLMGVKADIQTLN----ILTKSYGRAGMYDKMRSVMD-FMQKRFFFPTVVT 328 (471)
Q Consensus 259 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 328 (471)
...+ ...+. ..+++..|...|-+....--..+...+. .++-+-.-.++..+...++. .....-..|....
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHH
Confidence 3222 23345 7899999998887763211011211111 11111122233333333222 1111113344445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 408 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (471)
+..++.+| ..+++.+...++..... .+..|......+ ..+.+ .--...+.++.+. -....+..+...+.-
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i~~p---YsrIsl~~iA~~l~l 328 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-GTLYD----TMLEQNLCRIIEP---YSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-HHHHH----HHHHHHHHHHHTT---CSEEEHHHHHHHHTC
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-HHHHH----HHHHHHHHHHhHh---hceeeHHHHHHHHCc
Confidence 55555543 45677666666655433 244455422111 11000 0001111122211 134455666655543
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 012111 409 AGDVEKMGELFLTMKERH 426 (471)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~ 426 (471)
..+++...+-+|+..|
T Consensus 329 --s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDK 344 (394)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHCC
Confidence 6788888888888653
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.32 E-value=85 Score=20.17 Aligned_cols=62 Identities=8% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012111 349 FKKMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 411 (471)
Q Consensus 349 ~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 411 (471)
.+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....+..+...|-
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 345667787777654 44555555554 556677888888777666666666666666666654
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.94 E-value=1.6e+02 Score=23.20 Aligned_cols=93 Identities=11% Similarity=-0.068 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012111 367 LVSAYSKA---GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD-----VEKMGELFLTMKERHCVPDNITFATMI 438 (471)
Q Consensus 367 li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~ 438 (471)
+|+++.++ .+.+.|+-.+.+|++.|-.|....-..++.+.-..|. ...|...++.....|.+--...+...+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 012111 439 QAYNALGMTEAAQNLENKMIA 459 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~ 459 (471)
..++.+-+-..+...++.+++
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 315
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=35.66 E-value=3.1e+02 Score=29.20 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012111 377 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 456 (471)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (471)
.+...+.|.++.+.--.-|.......+..-.+.|++..|++++.++.+. .|....|..++..+...| |+.-..+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3445666777665422123333333344444689999999999999986 488999999988887777 5666666666
Q ss_pred HHHhhhcC
Q 012111 457 MIAMKENS 464 (471)
Q Consensus 457 m~~~~~~~ 464 (471)
+.-....+
T Consensus 1342 ~~~~~~p~ 1349 (1354)
T 3lxu_X 1342 MMITAFPS 1349 (1354)
T ss_dssp HHHHHSCS
T ss_pred hhhhhCcc
Confidence 65554443
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.62 E-value=1.6e+02 Score=23.02 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012111 218 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 297 (471)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (471)
++..+-...+.++.+.++.+. ...+..+.+ .++...-...+.++...|+.+ +...+..+.. .++..+-...
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 344444445555555554322 222222221 334444444455555555432 2333333332 3444444555
Q ss_pred HHHHHHcCC
Q 012111 298 TKSYGRAGM 306 (471)
Q Consensus 298 l~~~~~~~~ 306 (471)
+.++.+.+.
T Consensus 164 ~~aL~~~~~ 172 (211)
T 3ltm_A 164 ADALGEIGG 172 (211)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCc
Confidence 555555544
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.63 E-value=1.9e+02 Score=23.35 Aligned_cols=83 Identities=11% Similarity=0.136 Sum_probs=54.0
Q ss_pred HHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHH
Q 012111 345 MEEYFKKMKHR-----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGEL 418 (471)
Q Consensus 345 a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 418 (471)
-..++++.... ..+-|..-...-+ -|+.. .+....+|..|...|+-.. ...|......+...|++.+|..+
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl-~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWM-QYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHH-HHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHH-HHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555555443 2344554333322 23332 3577788988887766533 45677788888889999999999
Q ss_pred HHHHHhCCCCCC
Q 012111 419 FLTMKERHCVPD 430 (471)
Q Consensus 419 ~~~~~~~~~~p~ 430 (471)
|+.-++.+-.|-
T Consensus 173 y~~Gi~~~A~P~ 184 (223)
T 4aez_C 173 YQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHTCBSH
T ss_pred HHHHHHcCCccH
Confidence 999888777773
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.44 E-value=2.9e+02 Score=25.39 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=13.9
Q ss_pred cCChhHHHHHHHHHhcCCCHHHHHHHHHH
Q 012111 111 QARCQTFTKLMVMLGKCKQPEQASLLFEV 139 (471)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (471)
+--...|..-...+...|++++|.++--.
T Consensus 358 pGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 358 AGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33334444445555555555555554443
No 319
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.76 E-value=2.6e+02 Score=24.62 Aligned_cols=25 Identities=4% Similarity=0.048 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 012111 117 FTKLMVMLGKCKQPEQASLLFEVML 141 (471)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~m~ 141 (471)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4555666666677777777776654
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.48 E-value=69 Score=27.97 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 012111 223 YNTIIDGYGKAKKFEEMESSFSAM 246 (471)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~ 246 (471)
...++.-|...|+.++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455666677777777777766666
No 321
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.91 E-value=3e+02 Score=25.09 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=32.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcC
Q 012111 303 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-----IEKMEEYFKKMKHRG 356 (471)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~ 356 (471)
+.++.+.|..++..|.+.|..|....-..++.+.-.-|. ...|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 456788888888888887776655554444555444442 334445555555555
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.58 E-value=2e+02 Score=22.95 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012111 331 IVIETFG---KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 375 (471)
Q Consensus 331 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 375 (471)
-+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+...-|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455543 45678888888888888776554444344444443333
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.03 E-value=44 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHH
Q 012111 416 GELFLTMKERHCVPDNITF--ATMIQAYNALGMTEAAQNL 453 (471)
Q Consensus 416 ~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~ 453 (471)
.++++.+.+.|..++.... .+-+....+.|+.+-+..+
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 4555555666655543211 1223334455665544433
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.66 E-value=1.8e+02 Score=22.15 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 012111 275 MEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 324 (471)
Q Consensus 275 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 324 (471)
+..+|..|...|+-. -...|......+...|++.+|..||..-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334455554444322 22334444444445555555555555544444443
No 325
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.06 E-value=1.1e+02 Score=25.57 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.2
Q ss_pred HHhcCCHHHHHHHH
Q 012111 195 CTKFHRFDLIEKIL 208 (471)
Q Consensus 195 ~~~~~~~~~a~~~~ 208 (471)
.+..|+.+.+..++
T Consensus 38 A~~~g~~~~v~~Ll 51 (285)
T 3kea_A 38 AIADNNVRLVCTLL 51 (285)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34455554443333
No 326
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.60 E-value=1.9e+02 Score=22.22 Aligned_cols=187 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012111 166 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 245 (471)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (471)
......+-++.. .++...-...+.++...+..+....+.+.+. .++..+-...+.++...|..+....+...
T Consensus 13 ~~~~~~~i~~L~----~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~ 84 (201)
T 3ltj_A 13 PEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKA 84 (201)
T ss_dssp HHHHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred CcchHHHHHHhc----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 012111 246 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 325 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (471)
+ ..++...-...+.++.+.++.+....+...+. .++..+-...+.++.+.++.+....+...+... +
T Consensus 85 l-----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~ 151 (201)
T 3ltj_A 85 L-----KDEDGWVRQSAAVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDE----D 151 (201)
T ss_dssp T-----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS----S
T ss_pred H-----cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----C
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 326 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
...-...+.++...|. .++...+..+.. .++...-...+.++.+.+..
T Consensus 152 ~~vr~~A~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 152 GWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhh
No 327
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.51 E-value=1.3e+02 Score=27.65 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHh
Q 012111 400 NCIISAYGQAGDVEKMGELFLTMKERHCVP--------DNITFAT-MIQAYNALGMTEAAQNLENKMIAM 460 (471)
Q Consensus 400 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--------~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 460 (471)
+.|.+.|.+.|+...+..+++.+...+..| ...+|.. +.+.+...+++.+|.+.+..+.+.
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 444444455555554544444444332211 1233432 224455556666665555555554
No 328
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.31 E-value=3.6e+02 Score=25.20 Aligned_cols=65 Identities=8% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHH-HHHHHHHHccCCHHHHHHHHHHHHHc
Q 012111 185 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSA--VTY-NTIIDGYGKAKKFEEMESSFSAMVES 249 (471)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (471)
...+|.+++.|...+.++.|..+.....--.. ..+. ..| ..+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45688899999999999999999988742110 1121 122 23456677789999999988887654
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.18 E-value=2.7e+02 Score=23.80 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Q 012111 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR--FDLIEKILAEMSY 213 (471)
Q Consensus 151 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~ 213 (471)
....++.-|...|+.++|...++++.. .. ........++......++ -+.+-.++..+..
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~-p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC-GG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-cc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 356788889999999999999998764 11 122223333443333332 3445556666653
No 330
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.93 E-value=95 Score=27.09 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q 012111 294 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMK 358 (471)
Q Consensus 294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~ 358 (471)
...++.-|...|+.++|...++.+...... .......+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 466777788888888888777766432111 1112222222222211 234555666666655543
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.60 E-value=81 Score=22.76 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 332 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455555555667777777777766566666766666666666643
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.10 E-value=83 Score=22.71 Aligned_cols=44 Identities=2% Similarity=0.045 Sum_probs=20.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 410 (471)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444555555555555444444444333344444433
No 333
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.81 E-value=45 Score=27.66 Aligned_cols=238 Identities=12% Similarity=0.051 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHH
Q 012111 190 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMI 263 (471)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 263 (471)
..+...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+..++ +.+ ..++ ....+. +
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g-~~~~~~~~~g~t~-L 76 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL----RHG-ADPVLRKKNGATP-F 76 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTT-CCTTCCCTTCCCH-H
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----HcC-CCCcccCCCCCCH-H
Confidence 3455566778876555444 455444322 1123455556677766554444 332 2222 212222 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------------H
Q 012111 264 SAYGNSGNIEKMEKWYNEFNLMGVKADI---QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV------------T 328 (471)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~ 328 (471)
...+..|+.+-+. .+.+.|..++. .-.+ .+...+..|+.+-+.. +.+.|..++.. .
T Consensus 77 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 77 LLAAIAGSVKLLK----LFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKF----LYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHHTCHHHHH----HHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHH----HHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHHcCCHHHHH----HHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHH----HHHhCCCcccccccHHHHHhhccC
Confidence 3344566655444 33444544332 1122 3344456676654444 44444443321 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH--HHHH
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF--FNCI 402 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l 402 (471)
-...+...+..|+.+-+..++ +. |..++ ....+.+ ......+......++++.+.+.|..++... -.+.
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILL----DEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHH----HTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCcHHHHHHHcCCHHHHHHHH----HhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 112344445567765444443 33 43332 2222223 333455665555677777777776655421 1233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 012111 403 ISAYGQAGDVEKMGELFLTMKERHCVPDNIT--FATMIQAYNALGMTEAAQNLE 454 (471)
Q Consensus 403 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~ 454 (471)
+...+..|+.+-+..+++. .|..++... -.+.+....+.|..+-+.-++
T Consensus 223 L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll 273 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAELLC 273 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence 4444556776554444431 444443221 123344455667765444333
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.97 E-value=3.6e+02 Score=24.52 Aligned_cols=142 Identities=11% Similarity=0.057 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHH
Q 012111 235 KFEEMESSFSAMVES-------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-K---ADIQTLNILTKSYGR 303 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~ll~~~~~ 303 (471)
..++...++....+. .++..+......++.. ..|+...+..+++.+..... . ....+.
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~--------- 234 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKP--------- 234 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCH---------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCH---------
Confidence 455666666666554 2233455555555554 46777777777777654221 0 001111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 012111 304 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF---GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---- 376 (471)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 376 (471)
+...+++.......-......| .++.++ .+.++.+.|+.++.+|.+.|..|....-..++.+...-|.
T Consensus 235 ----e~v~~~l~~~~~~~dk~gd~~y-d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 235 ----ELLTEIAGERSARFDNKGDRFY-DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp ----HHHHHHHTCCCCC---CCHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred ----HHHHHHHhhhhhccCCccchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 1111111100000000112223 334444 3457899999999999998876654444444445444443
Q ss_pred -HHHHHHHHHHHHhCCC
Q 012111 377 -IMKVDSILRQVENSDV 392 (471)
Q Consensus 377 -~~~a~~~~~~~~~~~~ 392 (471)
...|...++.....|.
T Consensus 310 a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 2334445555555553
No 335
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.60 E-value=1.5e+02 Score=19.93 Aligned_cols=26 Identities=12% Similarity=-0.132 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012111 398 FFNCIISAYGQAGDVEKMGELFLTMK 423 (471)
Q Consensus 398 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 423 (471)
.+......+.+.|++++|++..+...
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34555666777777777777665543
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.32 E-value=74 Score=23.32 Aligned_cols=44 Identities=7% Similarity=0.093 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012111 367 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 410 (471)
Q Consensus 367 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 410 (471)
++..+...+..-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44444444444555566666555554444444444444444444
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.95 E-value=76 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012111 331 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 377 (471)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555566667888888888777667777777777777777654
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.73 E-value=1.3e+02 Score=18.65 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012111 329 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 373 (471)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 373 (471)
++.++..++...-.++++..+.++.+.| ..+...|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445555555555566666666666665 3455555544444443
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.05 E-value=60 Score=25.13 Aligned_cols=14 Identities=0% Similarity=-0.076 Sum_probs=7.4
Q ss_pred HhcCCHHHHHHHHH
Q 012111 160 GQSGLLDEAFSTIN 173 (471)
Q Consensus 160 ~~~~~~~~a~~~~~ 173 (471)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555554
No 340
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.01 E-value=1.6e+02 Score=27.41 Aligned_cols=65 Identities=8% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHH--H-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 361 SITYCSLVSAYSKAGLIMKVDSILRQVENSDV-ILDTP--F-FNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
...++.+++.|...+.++.|..+.....-... .++.. . +-.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677888888888888888888887652211 11111 1 122345566677888888877777654
No 341
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.50 E-value=1.1e+02 Score=24.44 Aligned_cols=185 Identities=7% Similarity=-0.053 Sum_probs=93.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 012111 226 IIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT--LNILTKS 300 (471)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~ 300 (471)
.+...++.|+.+.+..+++.+.+.+ ..++ ..-.+ .+...+..|+.+-+. .+.+.|..++... -...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQT-PLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT-CCSCCCCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCCcccccCCC-HHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHH
Confidence 4556677899988888887665543 3333 22233 344455677765444 4444554443221 1234455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhc
Q 012111 301 YGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI---TYCSLVSAYSKA 374 (471)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 374 (471)
.+..|+.+-+..+++.....+..+ +....+. +...+..|+.+ +++.+.+.|..++.. .-...+...+..
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 567788777666666544222222 2222333 33444556654 444455566554422 122344455667
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 012111 375 GLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 430 (471)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 430 (471)
|+.+-+..++ +.|..++.. -.+. +...+..|+.+- ++.+.+.|..++
T Consensus 161 ~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 161 NSLSMVQLLL----QHGANVNAQMYSGSSA-LHSASGRGLLPL----VRTLVRSGADSS 210 (241)
T ss_dssp TCHHHHHHHH----HTTCCTTCBCTTSCBH-HHHHHHHTCHHH----HHHHHHTTCCTT
T ss_pred CCHHHHHHHH----HcCCCCCCcCCCCCCH-HHHHHHcCCHHH----HHHHHhcCCCCC
Confidence 7766544444 445444322 1222 333445576553 444445565554
No 342
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.73 E-value=1.7e+02 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q 012111 130 PEQASLLFEVMLS 142 (471)
Q Consensus 130 ~~~a~~~~~~m~~ 142 (471)
.+.|.++++.+..
T Consensus 53 ~~~ar~Lld~L~~ 65 (97)
T 3ygs_P 53 RDQARQLIIDLET 65 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 343
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=22.60 E-value=73 Score=15.78 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.4
Q ss_pred ccccCC
Q 012111 5 NSIFTP 10 (471)
Q Consensus 5 ~~~~~~ 10 (471)
||+|++
T Consensus 19 ssisss 24 (35)
T 2lic_A 19 SSISSS 24 (35)
T ss_dssp SCCSTT
T ss_pred cccccc
Confidence 344443
No 344
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.24 E-value=1.7e+02 Score=20.76 Aligned_cols=43 Identities=2% Similarity=-0.051 Sum_probs=26.7
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 012111 383 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 425 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 425 (471)
+|+.+.+..+.++...--.-+......++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555666666544333233334456778999999988877753
No 345
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.18 E-value=5.4e+02 Score=24.91 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 012111 151 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 197 (471)
Q Consensus 151 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 197 (471)
+|. +|-.|.+.|++++|.++.++.... ..--...|...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~--~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN--IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG--C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh--HhhhhHHHHHHHHHHHh
Confidence 443 455567888888888888776541 11112345555566553
No 346
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.15 E-value=2.1e+02 Score=22.50 Aligned_cols=53 Identities=11% Similarity=-0.040 Sum_probs=27.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012111 404 SAYGQAGDVEKMGELFLTMKERHCVP---------DNITFATMIQAYNALGMTEAAQNLENKM 457 (471)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (471)
...+..|+.+-+..+++.+.+.|..+ |..-. +-+....+.|+.+-+..+++.-
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhcC
Confidence 34455677776666666666665432 22222 2233445566666655555443
No 347
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.08 E-value=1.6e+02 Score=23.20 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 012111 120 LMVMLGKCKQPEQASLLFEVMLS 142 (471)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~m~~ 142 (471)
.+..|.+.|.+++|.++|++...
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHhc
Confidence 34456667777777777776543
No 348
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.44 E-value=82 Score=24.78 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=11.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhh
Q 012111 439 QAYNALGMTEAAQNLENKMIAMK 461 (471)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~ 461 (471)
..|.+.|.+++|.+++++.....
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHccchHHHHHHHHHHhcCC
Confidence 34555555555555555544433
No 349
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.32 E-value=3.1e+02 Score=21.69 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=19.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 012111 268 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 305 (471)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 305 (471)
+..|.+.|+-++-+|.+.| .|.-..-..++-+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4456666666666666665 444444444444444333
No 350
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.72 E-value=2.1e+02 Score=19.50 Aligned_cols=32 Identities=9% Similarity=0.327 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012111 203 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 234 (471)
Q Consensus 203 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 234 (471)
.+.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35566666666677777777777766665544
No 351
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.69 E-value=2.4e+02 Score=21.36 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 012111 295 NILTKSYGRAGMYDKMRSVMDFMQ 318 (471)
Q Consensus 295 ~~ll~~~~~~~~~~~a~~~~~~~~ 318 (471)
..+++-|...++.++|..-++.+.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344455555555555555555443
No 352
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.41 E-value=1e+02 Score=20.24 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 012111 235 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 269 (471)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (471)
..++|...|..|+...++.|+. +|...+...+.-
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~D 48 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFD 48 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 3567777888887777666664 666666554443
No 353
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.29 E-value=3e+02 Score=21.13 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=5.8
Q ss_pred HHHHHHHhCCCC
Q 012111 135 LLFEVMLSDGLK 146 (471)
Q Consensus 135 ~~~~~m~~~~~~ 146 (471)
.+-.++...|+.
T Consensus 88 ~I~~eL~~KGI~ 99 (177)
T 3e3v_A 88 VIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHcCCC
Confidence 344445555553
Done!