Your job contains 1 sequence.
>012112
MLKSTFTPIFSTSPLKPRTPKLLRSYLISSSTSEATQPVRQNASTKITPQLSPTSAYIHL
PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFF
GGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLG
VQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV
GAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISS
YGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCW
GNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDE
WRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHAFGVIDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012112
(471 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2161897 - symbol:AT5G63290 species:3702 "Arabi... 1630 1.4e-167 1
TIGR_CMR|GSU_0030 - symbol:GSU_0030 "oxygen-independent c... 553 1.9e-53 1
TIGR_CMR|BA_4542 - symbol:BA_4542 "oxygen-independent cop... 508 1.1e-48 1
TIGR_CMR|CHY_0411 - symbol:CHY_0411 "putative oxygen-inde... 504 2.9e-48 1
TIGR_CMR|DET_0858 - symbol:DET_0858 "oxygen-independent c... 498 1.2e-47 1
UNIPROTKB|P52062 - symbol:yggW "predicted oxidoreductase"... 480 1.0e-45 1
TIGR_CMR|SPO_0006 - symbol:SPO_0006 "oxygen-independent c... 469 1.5e-44 1
UNIPROTKB|Q9KUR0 - symbol:VC_0455 "Oxygen-independent cop... 459 1.7e-43 1
TIGR_CMR|VC_0455 - symbol:VC_0455 "oxygen-independent cop... 459 1.7e-43 1
TIGR_CMR|CBU_0597 - symbol:CBU_0597 "oxygen-independent c... 428 3.3e-40 1
TIGR_CMR|CPS_3668 - symbol:CPS_3668 "putative oxygen-inde... 422 1.4e-39 1
UNIPROTKB|Q8EBY6 - symbol:yggW "Radical SAM superfamily p... 393 1.7e-36 1
TIGR_CMR|SO_3359 - symbol:SO_3359 "oxygen-independent cop... 393 1.7e-36 1
UNIPROTKB|Q8K928 - symbol:BUsg_532 "Oxygen-independent co... 391 2.7e-36 1
ZFIN|ZDB-GENE-030131-2508 - symbol:rsad1 "radical S-adeno... 389 4.4e-36 1
MGI|MGI:3039628 - symbol:Rsad1 "radical S-adenosyl methio... 385 1.2e-35 1
UNIPROTKB|F1RT95 - symbol:RSAD1 "Uncharacterized protein"... 375 1.3e-34 1
UNIPROTKB|A5D7B1 - symbol:RSAD1 "Radical S-adenosyl methi... 370 4.6e-34 1
UNIPROTKB|G5E5Q7 - symbol:RSAD1 "Radical S-adenosyl methi... 370 4.6e-34 1
UNIPROTKB|Q9HA92 - symbol:RSAD1 "Radical S-adenosyl methi... 354 2.3e-32 1
TIGR_CMR|CJE_0683 - symbol:CJE_0683 "oxygen-independent c... 333 3.8e-30 1
DICTYBASE|DDB_G0280411 - symbol:DDB_G0280411 "radical S-a... 332 4.9e-30 1
TIGR_CMR|SPO_3532 - symbol:SPO_3532 "oxygen-independent c... 326 1.6e-28 1
TIGR_CMR|SO_4730 - symbol:SO_4730 "oxygen-independent cop... 288 3.6e-23 1
UNIPROTKB|Q9KVM5 - symbol:VC_0116 "Oxygen-independent cop... 288 4.8e-23 1
TIGR_CMR|VC_0116 - symbol:VC_0116 "oxygen-independent cop... 288 4.8e-23 1
UNIPROTKB|P32131 - symbol:hemN "coproporphyrinogen III de... 271 3.9e-21 1
UNIPROTKB|Q9KL39 - symbol:VCA0909 "Oxygen-independent cop... 265 1.9e-20 1
TIGR_CMR|VC_A0909 - symbol:VC_A0909 "hutW protein" specie... 265 1.9e-20 1
TIGR_CMR|CJE_1072 - symbol:CJE_1072 "oxygen-independent c... 263 3.2e-20 1
TIGR_CMR|CPS_4823 - symbol:CPS_4823 "oxygen-independent c... 241 1.2e-17 1
TIGR_CMR|BA_0875 - symbol:BA_0875 "oxygen-independent cop... 232 1.6e-16 1
TIGR_CMR|SO_4520 - symbol:SO_4520 "oxygen-independent cop... 194 2.3e-12 1
TIGR_CMR|CJE_0412 - symbol:CJE_0412 "radical SAM domain p... 169 1.5e-09 1
UNIPROTKB|Q74AX2 - symbol:GSU2227 "Radical SAM domain iro... 143 6.4e-07 1
TIGR_CMR|GSU_2227 - symbol:GSU_2227 "radical SAM domain p... 143 6.4e-07 1
>TAIR|locus:2161897 [details] [associations]
symbol:AT5G63290 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006779 "porphyrin-containing
compound biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006779 GO:GO:0051536
EMBL:AB008265 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 TIGRFAMs:TIGR00539 UniGene:At.70283
UniGene:At.8846 EMBL:BT029015 IPI:IPI00526807 RefSeq:NP_201134.1
ProteinModelPortal:Q9FMJ4 STRING:Q9FMJ4 PRIDE:Q9FMJ4
EnsemblPlants:AT5G63290.1 GeneID:836449 KEGG:ath:AT5G63290
TAIR:At5g63290 HOGENOM:HOG000015380 InParanoid:Q9FMJ4 OMA:DWIHERT
PhylomeDB:Q9FMJ4 ProtClustDB:CLSN2687553 Genevestigator:Q9FMJ4
Uniprot:Q9FMJ4
Length = 484
Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
Identities = 311/482 (64%), Positives = 378/482 (78%)
Query: 1 MLKSTFTPIFSTSPLKPRTPKLLRSYLISSSTSEATQP-VRQNASTKITP--QLSPTSAY 57
MLK+T +PIFS+ KP+ L S + T P R+NAST +T + PTSAY
Sbjct: 1 MLKTTISPIFSSFTGKPKCSSKLFFRAFSKVVLQDTPPSARRNASTNLTTLHKGPPTSAY 60
Query: 58 IHLPFCRKRCHYCDFPIVALG---SSPTQTN------DDDPRVSNYIQLLCREIIATKPG 108
+HLPFCRKRCHYCDFPI+ALG SS +N +DDPR++NY+ LL REI AT+
Sbjct: 61 VHLPFCRKRCHYCDFPILALGMSSSSARPSNVYEEGKEDDPRITNYVNLLVREIKATRTD 120
Query: 109 HKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEE 168
T+P LETVFFGGGTPSLVPP+ VS IL+TL+ FGLS DAEISMEMDPGTFD +K+++
Sbjct: 121 FDTNPNLETVFFGGGTPSLVPPKLVSLILETLSLNFGLSPDAEISMEMDPGTFDGQKLKD 180
Query: 169 LMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228
LM LGVNRVSLGVQAFQDELLK+CGRAHG+ +VYEAIE VK CGVENWS+DLISSLPHQT
Sbjct: 181 LMKLGVNRVSLGVQAFQDELLKACGRAHGVSQVYEAIEFVKECGVENWSMDLISSLPHQT 240
Query: 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288
+MWEESLR + +QP HVSVYDLQVEQGTKFG LYTPG+ PLP+ETQSA FY+ ASSML
Sbjct: 241 LEMWEESLRLAIESQPNHVSVYDLQVEQGTKFGNLYTPGQSPLPSETQSAEFYKTASSML 300
Query: 289 SSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDY 348
AGY HYE+SSY DG++CKHNL YWKNKPFY FGLGSASY+GGLRFSRPRR+KE+ +Y
Sbjct: 301 RGAGYEHYEVSSYSRDGFKCKHNLIYWKNKPFYAFGLGSASYVGGLRFSRPRRLKEYTNY 360
Query: 349 VQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKP 408
V +LE G + GN +D KD+A D+LMLSFRT++G++LK FGE FG +V ++CK Y+P
Sbjct: 361 VADLENGAANWCGNGDVDLKDVATDILMLSFRTSKGLELKEFGEAFGSEVVKSICKVYEP 420
Query: 409 YIESGHVICLDEWRRAMNIEEFNSLLL-DETKIGNRLAYFRLSDPEGFLLSNELISHAFG 467
Y+ESGH++CLD+ R + I+EF +L+ DE KI + + Y RL DP+GFLLSNELIS +FG
Sbjct: 421 YVESGHIVCLDDMRSEVMIDEFKTLVANDEVKIEDHVRYLRLKDPDGFLLSNELISLSFG 480
Query: 468 VI 469
V+
Sbjct: 481 VV 482
>TIGR_CMR|GSU_0030 [details] [associations]
symbol:GSU_0030 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015380 OMA:MPAYEVS RefSeq:NP_951092.1
ProteinModelPortal:Q74H62 GeneID:2685648 KEGG:gsu:GSU0030
PATRIC:22022797 ProtClustDB:CLSK827599
BioCyc:GSUL243231:GH27-50-MONOMER Uniprot:Q74H62
Length = 385
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 122/346 (35%), Positives = 172/346 (49%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P Y+H+PFC K+C YC F V+ +P +D Y L+ RE+
Sbjct: 4 PLHLYVHIPFCLKKCRYCSF--VSRSDAPLAIDD-------YASLVAREMEMRVAAANPL 54
Query: 113 P--PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELM 170
P P T++ GGGTPSL+ P + I+D +GL AEI++E +PGT +++ +
Sbjct: 55 PLSPATTLYLGGGTPSLLSPAALERIIDAAARSYGLGPGAEITLEANPGTVTFQRLADFR 114
Query: 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ 230
GVNR+SLGVQ+F D +L GR H ++ EA+ + G +N +DLI SLP QTP
Sbjct: 115 SAGVNRLSLGVQSFDDGMLVLLGRLHTARQAREAVAATRRAGFDNIGIDLIHSLPGQTPD 174
Query: 231 MWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290
W E L V P HVS Y L VE+GT F + GE LP E QSA + + +L S
Sbjct: 175 QWREQLACAVALNPDHVSAYGLTVEEGTPFAAMEERGELVLPDEEQSALMFEATTDVLVS 234
Query: 291 AGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFS-RPRRMKEFVDYV 349
AG+ HYEI+++ +HN YW + + GFG G+ S+L F R + + Y
Sbjct: 235 AGFEHYEIANFARPHRRSRHNQVYWLRRNYLGFGAGAHSFLRAPAFGVRWKNTDDLELYR 294
Query: 350 QNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFG 395
L A + + D + L R GV + F FG
Sbjct: 295 DTLAAAELPGEERTVLSRADAMAEFFFLGLRLLDGVREEDFVREFG 340
>TIGR_CMR|BA_4542 [details] [associations]
symbol:BA_4542 "oxygen-independent coproporphyrinogen III
oxidase" species:198094 "Bacillus anthracis str. Ames" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0006779 GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 KO:K02495 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 OMA:MPAYEVS
RefSeq:NP_846765.1 RefSeq:YP_021188.1 ProteinModelPortal:Q81LR9
EnsemblBacteria:EBBACT00000008456 EnsemblBacteria:EBBACT00000017627
GeneID:1088276 GeneID:2819000 KEGG:ban:BA_4542 KEGG:bar:GBAA_4542
PATRIC:18786672 ProtClustDB:PRK08599
BioCyc:BANT261594:GJ7F-4418-MONOMER Uniprot:Q81LR9
Length = 378
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 126/391 (32%), Positives = 194/391 (49%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPP 114
+AYIH+PFC+ CHYCDF V + P V Y++ L +EII T
Sbjct: 3 AAYIHIPFCQHICHYCDFNKVFIERQP---------VDQYLEYLEKEIINTVQ-KVPFDS 52
Query: 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFG-LSLDAEISMEMDPGTFDARKMEELMDLG 173
++T+F GGGTP+ + +LD + + + + E++ E +PG K+ L++ G
Sbjct: 53 MKTIFVGGGTPTALNMEQTKKLLDIINRRLRPFAPNCELTFEANPGDLPKEKLNVLLEGG 112
Query: 174 VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233
VNR+S GVQ F+DELL+ GR H ++ + AI + G +N ++D+I +LP QT + +
Sbjct: 113 VNRISFGVQTFRDELLEKIGRKHTREDAFVAIREAQEVGFKNINVDIIYALPGQTIEDVK 172
Query: 234 ESL--RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291
E+L T+G Q H S Y L VE T F L G+ LP E A Y M +
Sbjct: 173 ETLDIAFTLGVQ--HFSAYSLIVEPKTVFYNLMNKGKLRLPGEDHEAKMYEMVMDEMERH 230
Query: 292 GYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQN 351
GY YEIS++ + E +HNLTYW N+ +YGFG G+ SY+ G R +K++ + +
Sbjct: 231 GYTQYEISNFSKGDNESRHNLTYWNNEEYYGFGAGAHSYVNGERIQNVGPLKQYFNKIDE 290
Query: 352 LEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIE 411
+D + + K+ + L L R +GV +F F + K + E
Sbjct: 291 TGFPYLDV---HVVTEKEKMEEELFLGLRKTKGVSKMAFRNKFNVEMNQVFAKQLQNNQE 347
Query: 412 SGHV------ICLDEWRRAMNIEEFNSLLLD 436
G + + L + + E F S L+D
Sbjct: 348 QGLLEESDGYVRLTRKGKLLGNEVFQSFLID 378
>TIGR_CMR|CHY_0411 [details] [associations]
symbol:CHY_0411 "putative oxygen-independent
coproporphyrinogen III oxidase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0004109 "coproporphyrinogen oxidase
activity" evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 RefSeq:YP_359272.1
ProteinModelPortal:Q3AF12 STRING:Q3AF12 GeneID:3727497
KEGG:chy:CHY_0411 PATRIC:21273983 OMA:MPAYEVS
BioCyc:CHYD246194:GJCN-412-MONOMER Uniprot:Q3AF12
Length = 376
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 116/364 (31%), Positives = 194/364 (53%)
Query: 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLE 116
Y+H+PFC K+CHYC F S P + V +Y+ L+ +E+ K PL+
Sbjct: 11 YLHMPFCLKKCHYCAFT-----SFPAPAGEG---VFSYLSLIKKELEWRKD---FLAPLK 59
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
T++ GGGTP+ + + + + ++ L E ++E +PGT + K+ L DLGVNR
Sbjct: 60 TIYVGGGTPTSLSLNALEKLGEIISPYISDKL-LEFTVEANPGTLNREKIRLLKDLGVNR 118
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236
VSLG Q+F DE+L GRAH + EA +++ G+ N +LDLI P + + + ++
Sbjct: 119 VSLGAQSFNDEILLKMGRAHTAAQTLEAYNLLREEGINNLNLDLIIGYP-EGRESFINTV 177
Query: 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296
+ + +P+H+S+YDL+VE+ T+ GE LP E + ++ A ++L GY Y
Sbjct: 178 KTAISLKPEHISLYDLKVEENTRLYEEVAKGEIILPEEDEVVLYWEEAINLLEENGYERY 237
Query: 297 EISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGL 356
EI+++ + +HNLTYW+NKP+ G GL + S +G RF P M E Y + L G
Sbjct: 238 EIANFARNQQYSRHNLTYWENKPYLGIGLAAHSKVGLYRFWNPNTMLE---YREMLLTG- 293
Query: 357 VDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVI 416
+G + ++ A + ++L R G++L+ F + + + + +IE G +
Sbjct: 294 -KNYGEEKLTLEEDAKEEIILRLRLKTGLNLQEFQKKYRRDFMAEFGDKIQKFIELGLLF 352
Query: 417 CLDE 420
D+
Sbjct: 353 LEDD 356
>TIGR_CMR|DET_0858 [details] [associations]
symbol:DET_0858 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015380 OMA:MPAYEVS RefSeq:YP_181584.1
ProteinModelPortal:Q3Z865 STRING:Q3Z865 GeneID:3229839
KEGG:det:DET0858 PATRIC:21608775 ProtClustDB:CLSK837244
BioCyc:DETH243164:GJNF-859-MONOMER Uniprot:Q3Z865
Length = 378
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 120/357 (33%), Positives = 189/357 (52%)
Query: 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLE 116
Y+H PFC ++C YC F S P + D P +Y++ L +EI + G
Sbjct: 9 YLHFPFCLQKCGYCSFV-----SYPARL-DCLP---DYVKCLRKEIKSRASGLY----FH 55
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
+++FGGGTPSL+ P V+ IL + L DAEI+ E +PGT + E+ LG+NR
Sbjct: 56 SLYFGGGTPSLLSPSQVADILAGIRTAAHLLPDAEITFEANPGTLALPYLPEIKSLGINR 115
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236
+SLG+Q+F L GR H + +A + + G N SLDLI LP + ++++L
Sbjct: 116 LSLGIQSFSGAELTMLGRLHNAAKARQAYKQARAAGFNNISLDLIYGLPDSSVSSFKKNL 175
Query: 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP-LPTETQSANFYRMASSMLSSAGYRH 295
+ P+H+S+Y L +E+ T G P + ET +A+ Y+ A +L+ AGYRH
Sbjct: 176 AEALALAPEHISLYGLTLEEDTPMYRQVQEGLLPEINAET-AADQYQAAEDILAKAGYRH 234
Query: 296 YEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAG 355
YEIS++ + GYE +HNLTYW+N+P+ G G S+L R + + E+++ QN
Sbjct: 235 YEISNWAKPGYESRHNLTYWQNRPYLGLGAAGHSFLENWRLANTSSLDEYLNRWQN---D 291
Query: 356 LVDCWGNN-HIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIE 411
L N ++D ++ + ++L R +G+ + FG H + K Y P I+
Sbjct: 292 LPPTPSENIYLDLENQLAETIILGLRLDKGITAEDIENRFG---QHVMDK-YFPVIQ 344
>UNIPROTKB|P52062 [details] [associations]
symbol:yggW "predicted oxidoreductase" species:83333
"Escherichia coli K-12" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0006779
EMBL:U28377 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00539 OMA:CEHNLNY PIR:B65081 RefSeq:NP_417430.1
RefSeq:YP_491154.1 ProteinModelPortal:P52062 SMR:P52062
DIP:DIP-12198N IntAct:P52062 MINT:MINT-1261070 PRIDE:P52062
EnsemblBacteria:EBESCT00000004775 EnsemblBacteria:EBESCT00000014373
GeneID:12933358 GeneID:947446 KEGG:ecj:Y75_p2885 KEGG:eco:b2955
PATRIC:32121322 EchoBASE:EB2808 EcoGene:EG12983
HOGENOM:HOG000015379 ProtClustDB:PRK05660
BioCyc:EcoCyc:G7531-MONOMER BioCyc:ECOL316407:JW2922-MONOMER
Genevestigator:P52062 Uniprot:P52062
Length = 378
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 128/394 (32%), Positives = 202/394 (51%)
Query: 50 QLSPTSAYIHLPFCRKRCHYCDFPIVAL-GSSPTQTNDDDPRVSNYIQLLCREIIATKPG 108
+L P S YIH+P+C ++C YCDF AL G P +DD Y+Q L ++
Sbjct: 3 KLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVP---HDD------YVQHLLNDL-DNDVA 52
Query: 109 HKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEE 168
+ ++T+F GGGTPSL+ + ++LD + + L+ DAEI+ME +PGT +A + +
Sbjct: 53 YAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVD 112
Query: 169 LMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228
GVNR+S+GVQ+F +E LK GR HG +E A ++ G+ +++LDL+ LP Q+
Sbjct: 113 YQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQS 172
Query: 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288
+ LR+ + P H+S Y L +E T FG P LP + + + +L
Sbjct: 173 LEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSR-PP---VLPDDDALWDIFEQGHQLL 228
Query: 289 SSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS---ASYLGG--LRFSRPRRMK 343
++AGY+ YE S+Y + GY+C+HNL YW+ + G G G+ ++ G LR ++ R +
Sbjct: 229 TAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPR 288
Query: 344 EFVDYVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFG-CSLVHTL 402
F+ + LE+ ++A D + M FR F G C V +
Sbjct: 289 GFMQG-RYLES-------QRDVEATDKPFEFFMNRFRLLEAAPRVEFIAYTGLCEDV--I 338
Query: 403 CKAYKPYIESGHVI-CLDEWRRAMNIEEF-NSLL 434
I G++ C D W+ + + F NSLL
Sbjct: 339 RPQLDEAIAQGYLTECADYWQITEHGKLFLNSLL 372
>TIGR_CMR|SPO_0006 [details] [associations]
symbol:SPO_0006 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 HOGENOM:HOG000015381
TIGRFAMs:TIGR00539 OMA:MPAYEVS RefSeq:YP_165279.1
ProteinModelPortal:Q5LWF8 GeneID:3196529 KEGG:sil:SPO0006
PATRIC:23373241 ProtClustDB:PRK09057 Uniprot:Q5LWF8
Length = 385
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 111/337 (32%), Positives = 171/337 (50%)
Query: 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLE 116
Y+H PFC+ +C YCDF S + D V Y+ L R A PG L
Sbjct: 13 YVHWPFCQAKCPYCDF-----NSHVAREIDQKAWVRAYVSELER-CAAELPGRV----LN 62
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
T+FFGGGTPSL+ P V+++++T+ + S D EI++E +PG+ +A + D GVNR
Sbjct: 63 TIFFGGGTPSLMMPETVAAVIETVRRLWPTSNDMEITLEANPGSVEAGRFAAYRDGGVNR 122
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236
+S+GVQA D L GR H + E A +I + C E S DLI + QTP+ W L
Sbjct: 123 ISMGVQALNDRDLHRLGRIHSVAEARAAFDIARRC-FERVSFDLIYARQDQTPEAWRAEL 181
Query: 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP-LPTETQSANFYRMASSMLSSAGYRH 295
+ H+S+Y L +E GT FG Y G+ LP + +A+ Y + + ++ G
Sbjct: 182 NEALAMAVDHLSLYQLTIEDGTAFGDRYARGKLRGLPADDDAADMYLITQEVCATHGLPA 241
Query: 296 YEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYL--GGLRFSRPRRMKEFVDYVQNLE 353
YE+S++ G E +HNL YW+ + G G G+ + G RF+ + ++ +
Sbjct: 242 YEVSNHARPGSESRHNLIYWRYGDYVGIGPGAHGRITVDGQRFATESPLNPGA-WLGAVA 300
Query: 354 AGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSF 390
G + + +D A + LM+ R A G+D+ +
Sbjct: 301 KGSGEL-SRVALSLQDQADEYLMMGLRIAEGLDIHRY 336
>UNIPROTKB|Q9KUR0 [details] [associations]
symbol:VC_0455 "Oxygen-independent coproporphyrinogen III
oxidase, putative" species:243277 "Vibrio cholerae O1 biovar El Tor
str. N16961" [GO:0004109 "coproporphyrinogen oxidase activity"
evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
ProtClustDB:PRK05660 OMA:DWIHERT PIR:G82320 RefSeq:NP_230109.1
ProteinModelPortal:Q9KUR0 DNASU:2615117 GeneID:2615117
KEGG:vch:VC0455 PATRIC:20080005 Uniprot:Q9KUR0
Length = 391
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 112/351 (31%), Positives = 176/351 (50%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVAL-GSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSP 113
S YIH+P+C ++C YCDF A G P Q D +Q L R+I + K P
Sbjct: 8 SLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDA-----LLQDLDRDI--ERYQLKGDP 60
Query: 114 PL-ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
L ++F GGGTPSL+ ++ +L + ++ + EI+ME +PGT +A++
Sbjct: 61 RLLHSIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTA 120
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
GV R+S+GVQ+F+ E L GR HG +E A ++ G+ +++LDL+ LP QTP+
Sbjct: 121 GVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQA 180
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
L + + P H+S Y L +E T F Y+ LP E + + + LS AG
Sbjct: 181 LADLDQAIALNPPHLSWYQLTIEPNTLF---YSKPP-KLPDEDALWDIFELGHQKLSDAG 236
Query: 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS---ASYLGG--LRFSRPRRMKEFVD 347
Y YEIS Y + GY+C+HNL YW+ + G G G+ S+ G +R ++ + + ++
Sbjct: 237 YVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLA 296
Query: 348 YVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSL 398
+ NL +D + +D + M FR F T G ++
Sbjct: 297 ALNNLAKAYLD--SEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTI 345
>TIGR_CMR|VC_0455 [details] [associations]
symbol:VC_0455 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
ProtClustDB:PRK05660 OMA:DWIHERT PIR:G82320 RefSeq:NP_230109.1
ProteinModelPortal:Q9KUR0 DNASU:2615117 GeneID:2615117
KEGG:vch:VC0455 PATRIC:20080005 Uniprot:Q9KUR0
Length = 391
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 112/351 (31%), Positives = 176/351 (50%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVAL-GSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSP 113
S YIH+P+C ++C YCDF A G P Q D +Q L R+I + K P
Sbjct: 8 SLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDA-----LLQDLDRDI--ERYQLKGDP 60
Query: 114 PL-ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
L ++F GGGTPSL+ ++ +L + ++ + EI+ME +PGT +A++
Sbjct: 61 RLLHSIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTA 120
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
GV R+S+GVQ+F+ E L GR HG +E A ++ G+ +++LDL+ LP QTP+
Sbjct: 121 GVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQA 180
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
L + + P H+S Y L +E T F Y+ LP E + + + LS AG
Sbjct: 181 LADLDQAIALNPPHLSWYQLTIEPNTLF---YSKPP-KLPDEDALWDIFELGHQKLSDAG 236
Query: 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS---ASYLGG--LRFSRPRRMKEFVD 347
Y YEIS Y + GY+C+HNL YW+ + G G G+ S+ G +R ++ + + ++
Sbjct: 237 YVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLA 296
Query: 348 YVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSL 398
+ NL +D + +D + M FR F T G ++
Sbjct: 297 ALNNLAKAYLD--SEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTI 345
>TIGR_CMR|CBU_0597 [details] [associations]
symbol:CBU_0597 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:227377 "Coxiella burnetii RSA 493"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
OMA:CEHNLNY HOGENOM:HOG000015379 RefSeq:NP_819627.1
ProteinModelPortal:Q83DU5 GeneID:1208482 KEGG:cbu:CBU_0597
PATRIC:17929887 ProtClustDB:CLSK914174
BioCyc:CBUR227377:GJ7S-599-MONOMER Uniprot:Q83DU5
Length = 375
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 107/347 (30%), Positives = 173/347 (49%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S YIH+P+C ++C YCDF AL + D P + YI L E+ +
Sbjct: 5 PLSFYIHMPWCIRKCPYCDFNSHAL-------HQDLPEEA-YINALINEL-RQQIALIEK 55
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
P+ T+F GGGTPSL + + + + L + EI++E +PG+ + K ++
Sbjct: 56 RPIHTIFIGGGTPSLFSQTAYQKLFEEIKKQCLLKKEVEITLEANPGSVEQTKFRGYREI 115
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G+NR+S+GVQ+FQ++ LK GR H +E +AI I K G EN ++DL+ LP Q
Sbjct: 116 GINRLSIGVQSFQNDKLKVLGRIHSAEEAKQAINIAKQAGFENINVDLMFGLPDQKVNEA 175
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
+ L+ + +P H+S Y L +E T F + P LPT+ +L G
Sbjct: 176 LDDLQTALDLEPTHLSWYQLTLEPNTFF-YKHPPA---LPTDDYIWEIQSKGRKLLRRDG 231
Query: 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLG--GLRFSRPRRMKEFVDYVQ 350
+ HYE+S+Y C+HN+ YW+ + G G G+ S L G + +R +K Y+
Sbjct: 232 FAHYEVSAYSRSNRFCQHNINYWEFGDYLGLGAGAHSKLTIQG-KITRYWNIKNPRFYM- 289
Query: 351 NLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCS 397
+ + ++ G + +L ++ +M + R + + L F E G S
Sbjct: 290 DAQKPFIE--GRQTLAPNELPLEFMMNALRLQKPIPLTLFTERTGLS 334
>TIGR_CMR|CPS_3668 [details] [associations]
symbol:CPS_3668 "putative oxygen-independent
coproporphyrinogen III oxidase" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004109 "coproporphyrinogen oxidase
activity" evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 GO:GO:0006779 GO:GO:0051536 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 eggNOG:COG0635 KO:K02495 InterPro:IPR010723
Pfam:PF06969 TIGRFAMs:TIGR00539 OMA:CEHNLNY HOGENOM:HOG000015379
RefSeq:YP_270336.1 ProteinModelPortal:Q47XY4 STRING:Q47XY4
GeneID:3519722 KEGG:cps:CPS_3668 PATRIC:21470263
BioCyc:CPSY167879:GI48-3690-MONOMER Uniprot:Q47XY4
Length = 388
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 106/352 (30%), Positives = 175/352 (49%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSS-PTQTNDDDPRVSNYIQLLCREIIA--TKPGH 109
P S YIH+P+C ++C YCDF A+ S+ P Q +Y+ L R++ A + G
Sbjct: 9 PLSLYIHIPWCVEKCPYCDFNSHAVKSAIPEQ---------DYVAALIRDLDADIARFGL 59
Query: 110 KTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169
T L ++F GGGTPSL + +L+ + ++F D EI++E +PGT +A K
Sbjct: 60 STRS-LHSIFIGGGTPSLFSAASIKDLLEQVLNRFDHKADIEITLEANPGTVEADKFIGF 118
Query: 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP 229
GVNR+S+GVQ+F + L GR H + A ++ GV +++LDL+ LP+Q+
Sbjct: 119 FKAGVNRLSIGVQSFASDKLIKLGRIHDSNQAKIAAKLATESGVSSFNLDLMHGLPNQSL 178
Query: 230 QMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289
+ L+ + P H+S Y L +E T F P + LP + +L+
Sbjct: 179 DNALDDLKTAISLNPNHISWYQLTIEPNTIFHS--KPPK--LPVDDILWEIQDQGVKLLN 234
Query: 290 SAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLR---FSRPRRMKEFV 346
AGY+ YEIS+Y + GY+C+HNL YW+ + G G G+ + R R ++K
Sbjct: 235 EAGYQQYEISAYAKLGYQCQHNLNYWQYGDYLGIGCGAHGKITDSRSQKIMRTIKVKHPK 294
Query: 347 DYVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSL 398
Y+ + +D + +D + + +M R ++ F + G ++
Sbjct: 295 GYLDD-NRDFLDKL--SEVDESERPFEFMMNQLRLHSAFSIEQFQTSTGLNI 343
>UNIPROTKB|Q8EBY6 [details] [associations]
symbol:yggW "Radical SAM superfamily protein YggW"
species:211586 "Shewanella oneidensis MR-1" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015379 OMA:MPAYEVS RefSeq:NP_718913.1
ProteinModelPortal:Q8EBY6 GeneID:1171040 KEGG:son:SO_3359
PATRIC:23526392 ProtClustDB:CLSK907128 Uniprot:Q8EBY6
Length = 385
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 97/288 (33%), Positives = 142/288 (49%)
Query: 44 STKITPQLS--PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLC-- 99
S ++PQL+ P S YIH+P+C ++C YCDF +S Q N + P+ + LL
Sbjct: 2 SVNVSPQLTLPPLSLYIHIPWCVQKCPYCDF------NSHGQ-NGELPQQAYVDALLADL 54
Query: 100 REIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG 159
R+ + G K L T+F GGGTPSL + ILD S EI+ME +PG
Sbjct: 55 RQDLHLVQGRK----LHTIFIGGGTPSLFDANQIKRILDDANALIPFSDGIEITMEANPG 110
Query: 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219
T + GV R+S+GVQ+F + L GR H E A + + +++LD
Sbjct: 111 TLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKARQADYLSFNLD 170
Query: 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSAN 279
L+ LP+Q+ + + P H+S Y L +E T F P + LP +
Sbjct: 171 LMHGLPNQSFEEAMADIDTAASLNPPHLSWYQLTIEPNTLFHS--KPPQ--LPDDEDLWQ 226
Query: 280 FYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
Y L++ GY YEIS+Y + GY+C+HNL YW+ + G G G+
Sbjct: 227 IYEQGQQKLAALGYEQYEISAYAKPGYQCQHNLNYWQFGDYLGIGCGA 274
>TIGR_CMR|SO_3359 [details] [associations]
symbol:SO_3359 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:211586 "Shewanella oneidensis MR-1"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015379 OMA:MPAYEVS RefSeq:NP_718913.1
ProteinModelPortal:Q8EBY6 GeneID:1171040 KEGG:son:SO_3359
PATRIC:23526392 ProtClustDB:CLSK907128 Uniprot:Q8EBY6
Length = 385
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 97/288 (33%), Positives = 142/288 (49%)
Query: 44 STKITPQLS--PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLC-- 99
S ++PQL+ P S YIH+P+C ++C YCDF +S Q N + P+ + LL
Sbjct: 2 SVNVSPQLTLPPLSLYIHIPWCVQKCPYCDF------NSHGQ-NGELPQQAYVDALLADL 54
Query: 100 REIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG 159
R+ + G K L T+F GGGTPSL + ILD S EI+ME +PG
Sbjct: 55 RQDLHLVQGRK----LHTIFIGGGTPSLFDANQIKRILDDANALIPFSDGIEITMEANPG 110
Query: 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219
T + GV R+S+GVQ+F + L GR H E A + + +++LD
Sbjct: 111 TLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKARQADYLSFNLD 170
Query: 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSAN 279
L+ LP+Q+ + + P H+S Y L +E T F P + LP +
Sbjct: 171 LMHGLPNQSFEEAMADIDTAASLNPPHLSWYQLTIEPNTLFHS--KPPQ--LPDDEDLWQ 226
Query: 280 FYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
Y L++ GY YEIS+Y + GY+C+HNL YW+ + G G G+
Sbjct: 227 IYEQGQQKLAALGYEQYEISAYAKPGYQCQHNLNYWQFGDYLGIGCGA 274
>UNIPROTKB|Q8K928 [details] [associations]
symbol:BUsg_532 "Oxygen-independent coproporphyrinogen-III
oxidase-like protein BUsg_532" species:198804 "Buchnera aphidicola
str. Sg (Schizaphis graminum)" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:AE013218 GenomeReviews:AE013218_GR GO:GO:0051539
GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 TIGRFAMs:TIGR00539 RefSeq:NP_660862.1
ProteinModelPortal:Q8K928 EnsemblBacteria:EBBUCT00000000213
GeneID:1005648 KEGG:bas:BUsg532 PATRIC:21247936 OMA:CEHNLNY
ProtClustDB:CLSK552878 BioCyc:BAPH198804:GHMG-575-MONOMER
Uniprot:Q8K928
Length = 376
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 114/394 (28%), Positives = 186/394 (47%)
Query: 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGH 109
+L P S YIH+P+C K+C YCDF + N YI L +++
Sbjct: 3 KLPPISLYIHIPWCIKKCGYCDFY--------SYVNKSFIPEKEYIDHLLKDLEKDLSLI 54
Query: 110 KTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169
K + ++F GGGTPSL+ + ++ + + +S AEI++E +P T + ++
Sbjct: 55 KERE-INSIFIGGGTPSLLKSSSIKKMMREIKKRINISNTAEITIEANPTTLEYKRFFNY 113
Query: 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP 229
G+NR S+GVQ F +LLK R + +E A+E +K +N++LD++ LP+Q+
Sbjct: 114 KKSGINRFSIGVQTFNSDLLKKIERTYNKREAILAVEEIKKIN-KNFNLDIMYGLPNQSL 172
Query: 230 QMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289
+ L+ V P H+S Y L +E T F Y + LP E L
Sbjct: 173 KDVLLDLQYAVKYNPTHISWYQLTLEPNTPF---YVK-KLNLPNENNIFKMLVEGEKFLK 228
Query: 290 SAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGL---GSASYLGG--LRFSRPRRMKE 344
+GY+ YEISSY + YEC+HNL YW + G G G + + G +R + + + +
Sbjct: 229 QSGYKKYEISSYAKLNYECQHNLNYWNFGDYIGIGCSAHGKITQINGDIIRTIKNKNIND 288
Query: 345 FVD--YVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTL 402
F++ Y+++ N + KD + M FR + V + F E + + +
Sbjct: 289 FMNGKYLKH----------KNFVLKKDKPFEYFMNIFRLYKPVLKRQFEERTNINQNY-I 337
Query: 403 CKAYKPYIESGHVIC-LDEWRRAMNIEEF-NSLL 434
+ K IE G++ +D W + F NSLL
Sbjct: 338 KEKIKKAIEKGYLKNKIDFWDTTKKGKMFLNSLL 371
>ZFIN|ZDB-GENE-030131-2508 [details] [associations]
symbol:rsad1 "radical S-adenosyl methionine domain
containing 1" species:7955 "Danio rerio" [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0004109 "coproporphyrinogen
oxidase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
ZFIN:ZDB-GENE-030131-2508 GO:GO:0005737 GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539 OMA:WLGQLQE
GeneTree:ENSGT00390000011216 EMBL:BX682552 IPI:IPI00846095
ProteinModelPortal:F1RB14 Ensembl:ENSDART00000110809 Bgee:F1RB14
Uniprot:F1RB14
Length = 444
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 111/410 (27%), Positives = 200/410 (48%)
Query: 39 VRQNASTKITPQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLL 98
+R AS KI S Y+H P+C KRC YC+F L S N D ++ +Q
Sbjct: 29 LRSIASDKIPSHAVEASLYVHWPYCLKRCSYCNFNKYILRSE----NHDT--MTECLQKE 82
Query: 99 CREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP 158
++ + + +VFFGGGTPSL ++++L+T+T LS AE+++E++P
Sbjct: 83 TETLLKLSQVSR----ITSVFFGGGTPSLAQSSTIAAVLETVTKNSNLSDLAEVTLEVNP 138
Query: 159 GTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAI-EIVKLCGVENWS 217
++++ GVNR S+GVQ+ + L+ GR H ++ + + E KLC S
Sbjct: 139 TPAGKARLKDFTLAGVNRFSIGVQSLNADHLRILGRDHSVQHALQTVSEARKLCP-GRVS 197
Query: 218 LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQS 277
+D++ +LP Q+ W++ L + H+S+Y L +E+GT+ G+ +P + +
Sbjct: 198 VDIMFALPGQSVSCWQKQLEELLYVCDDHISLYQLTLERGTQLFKQVESGKLSVPGDEVT 257
Query: 278 ANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYL-----G 332
A Y+ A +L +G+ YE+S++ + +HN+ YW+ + G G G+ G
Sbjct: 258 AVMYKTACRVLEESGFHQYEVSNFARNNAVSEHNMGYWRGHQYIGVGPGAHGRFVPHGDG 317
Query: 333 GL-RFSRPRRMKE--FVDYVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKS 389
G+ R +R + ++ ++ VQ+ G +H+ L +VL++ R G+ +
Sbjct: 318 GVQREARTQTLEPDVWIKEVQSRGQGTRRRITLHHLQ---LLEEVLVMGLRMNEGITHQH 374
Query: 390 FGETFG--CSLVHTLCKAYK-PYIESGHVICLDEWRRAMNIEEFNSLLLD 436
+ E F +L K+ ++ G + LD+ R + +LLD
Sbjct: 375 W-ELFSPEANLQQVFGKSANIQELQGGRFLILDD--RGLRCSWEGLVLLD 421
>MGI|MGI:3039628 [details] [associations]
symbol:Rsad1 "radical S-adenosyl methionine domain
containing 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004109 "coproporphyrinogen oxidase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 MGI:MGI:3039628
GO:GO:0005739 GO:GO:0046872 GO:GO:0051539 GO:GO:0006779
EMBL:AL645809 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969 CTD:55316
HOGENOM:HOG000015381 HOVERGEN:HBG108421 OrthoDB:EOG4SQWX4
TIGRFAMs:TIGR00539 OMA:WLGQLQE EMBL:BC056485 EMBL:BC139274
EMBL:BC139276 IPI:IPI00121868 RefSeq:NP_001013399.1
UniGene:Mm.342275 ProteinModelPortal:Q5SUV1 STRING:Q5SUV1
PRIDE:Q5SUV1 Ensembl:ENSMUST00000040487 GeneID:237926
KEGG:mmu:237926 UCSC:uc007kza.2 GeneTree:ENSGT00390000011216
InParanoid:B2RTE1 NextBio:383574 Bgee:Q5SUV1 CleanEx:MM_RSAD1
Genevestigator:Q5SUV1 Uniprot:Q5SUV1
Length = 442
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 84/282 (29%), Positives = 144/282 (51%)
Query: 48 TPQLSPTSA--YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIAT 105
+P+ + T A Y+H P+C KRC YC+F + ++ V N + R ++
Sbjct: 32 SPESASTRAALYVHWPYCEKRCSYCNF------NKYIPRGVEEGTVRNCLVTEARTLLRL 85
Query: 106 KPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK 165
+ +E+VFFGGGTPSL P V+++L+ + + L D+E+++E +P + +
Sbjct: 86 SGVQR----VESVFFGGGTPSLASPHTVAAVLEAVAQEVYLPADSEVTLEANPTSAPGPR 141
Query: 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP 225
+ GVNR+S+G+Q+ D L+ GR H + + +L S+DL+ LP
Sbjct: 142 LAAFGAAGVNRLSIGLQSLDDAELQLLGRTHSASDALRTLAEARLLFPGRVSVDLMLGLP 201
Query: 226 HQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285
Q + W + L++ + H+S+Y L +E+GT G P P +A Y+
Sbjct: 202 AQKVEPWLQQLQKLLYHCDDHLSLYQLTLERGTSLFAQVQQGTLPAPDPDLAAEMYQEGR 261
Query: 286 SMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
++L AG+R YE+S++ +G HN TYW+ + G G G+
Sbjct: 262 TVLRDAGFRQYEVSNFARNGALSTHNWTYWQCGQYLGIGPGA 303
>UNIPROTKB|F1RT95 [details] [associations]
symbol:RSAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
TIGRFAMs:TIGR00539 OMA:WLGQLQE GeneTree:ENSGT00390000011216
EMBL:FP565647 RefSeq:XP_003131622.1 UniGene:Ssc.6397
ProteinModelPortal:F1RT95 Ensembl:ENSSSCT00000019122
GeneID:100513042 KEGG:ssc:100513042 Uniprot:F1RT95
Length = 442
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 84/284 (29%), Positives = 139/284 (48%)
Query: 48 TPQLSPTSA----YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREII 103
TP +P S Y+H P+C KRC YC+F + D+ + + + ++
Sbjct: 30 TPSPAPGSQRAALYVHWPYCEKRCSYCNF------NKYIPRGVDEAAMRRCLVTEAQTLL 83
Query: 104 ATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDA 163
+ +E+VFFGGGTPSL PR V+++L+ + L +D+E+++E +P +
Sbjct: 84 RLSGVQR----VESVFFGGGTPSLASPRTVAAVLEAVAQATHLPVDSEVTLEANPTSAPG 139
Query: 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS 223
++ GVNR+S+G+Q+ D L+ GR H + + + S+DL+
Sbjct: 140 SRLAAFRAAGVNRLSIGLQSLDDAELQLLGRTHSASDALRTLAEARRLFPGRVSVDLLLG 199
Query: 224 LPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRM 283
LP Q W L+ + HVS+Y L +E+GT G P P +A Y+
Sbjct: 200 LPAQQVGPWLRQLQELLRRCDDHVSLYQLTLERGTALFAQVQQGALPAPDPELAAEMYQQ 259
Query: 284 ASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
++L AG+R YE+S++ +G HN TYW+ + G G G+
Sbjct: 260 GRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLGVGPGA 303
>UNIPROTKB|A5D7B1 [details] [associations]
symbol:RSAD1 "Radical S-adenosyl methionine
domain-containing protein 1, mitochondrial" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006779 "porphyrin-containing
compound biosynthetic process" evidence=IEA] [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0046872
GO:GO:0051539 GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969
EMBL:BC140491 IPI:IPI00706716 RefSeq:NP_001091605.1
UniGene:Bt.29418 ProteinModelPortal:A5D7B1 STRING:A5D7B1
GeneID:615755 KEGG:bta:615755 CTD:55316 HOGENOM:HOG000015381
HOVERGEN:HBG108421 InParanoid:A5D7B1 OrthoDB:EOG4SQWX4
NextBio:20899769 TIGRFAMs:TIGR00539 Uniprot:A5D7B1
Length = 442
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 82/305 (26%), Positives = 147/305 (48%)
Query: 24 RSYLISSSTSEATQPVRQNASTKI-TPQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPT 82
R ++ ++ ++ +P + P + Y+H P+C KRC YC+F +
Sbjct: 9 RGWVKAAKMAQRRRPADDTGGPQSPAPGSQRAALYVHWPYCEKRCSYCNF------NKYI 62
Query: 83 QTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142
D+ + + + + ++ + +E+VFFGGGTPSL P V+++L+ +
Sbjct: 63 PRGVDEAALRRCLVIEAQTLLRLSGVRR----VESVFFGGGTPSLASPHTVAAVLEAVAQ 118
Query: 143 KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202
L D+E+++E +P + ++ GVNR+S+G+Q+ D L+ GR H ++
Sbjct: 119 AAHLPADSEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQSLDDTELQLLGRTHSARDAL 178
Query: 203 EAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGI 262
+ + + S+DL+ LP Q W L+ + HVS+Y L +E+GT
Sbjct: 179 QTLAEAQRLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCCDDHVSLYQLSLERGTTLFT 238
Query: 263 LYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYG 322
G P P +A Y+ ++L AG+R YE+S++ +G HN TYW+ + G
Sbjct: 239 QVQQGALPAPDPELAAEMYQEGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLG 298
Query: 323 FGLGS 327
G G+
Sbjct: 299 VGPGA 303
>UNIPROTKB|G5E5Q7 [details] [associations]
symbol:RSAD1 "Radical S-adenosyl methionine
domain-containing protein 1, mitochondrial" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
InterPro:IPR010723 Pfam:PF06969 UniGene:Bt.29418 TIGRFAMs:TIGR00539
OMA:WLGQLQE GeneTree:ENSGT00390000011216 EMBL:DAAA02049037
ProteinModelPortal:G5E5Q7 Ensembl:ENSBTAT00000028387 Uniprot:G5E5Q7
Length = 442
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 82/305 (26%), Positives = 147/305 (48%)
Query: 24 RSYLISSSTSEATQPVRQNASTKI-TPQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPT 82
R ++ ++ ++ +P + P + Y+H P+C KRC YC+F +
Sbjct: 9 RGWVKAAKMAQRRRPADDTGGPQSPAPGSQRAALYVHWPYCEKRCSYCNF------NKYI 62
Query: 83 QTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142
D+ + + + + ++ + +E+VFFGGGTPSL P V+++L+ +
Sbjct: 63 PRGVDEAALRRCLVIEAQTLLRLSGVRR----VESVFFGGGTPSLASPHTVAAVLEAVAQ 118
Query: 143 KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202
L D+E+++E +P + ++ GVNR+S+G+Q+ D L+ GR H ++
Sbjct: 119 AAHLPADSEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQSLDDTELQLLGRTHSARDAL 178
Query: 203 EAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGI 262
+ + + S+DL+ LP Q W L+ + HVS+Y L +E+GT
Sbjct: 179 QTLAEAQRLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCCDDHVSLYQLSLERGTTLFT 238
Query: 263 LYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYG 322
G P P +A Y+ ++L AG+R YE+S++ +G HN TYW+ + G
Sbjct: 239 QVQQGALPAPDPELAAEMYQEGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLG 298
Query: 323 FGLGS 327
G G+
Sbjct: 299 VGPGA 303
>UNIPROTKB|Q9HA92 [details] [associations]
symbol:RSAD1 "Radical S-adenosyl methionine
domain-containing protein 1, mitochondrial" species:9606 "Homo
sapiens" [GO:0004109 "coproporphyrinogen oxidase activity"
evidence=IEA] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0046872
GO:GO:0051539 GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969
CTD:55316 HOGENOM:HOG000015381 HOVERGEN:HBG108421 OrthoDB:EOG4SQWX4
TIGRFAMs:TIGR00539 OMA:WLGQLQE EMBL:AK002026 EMBL:AK022105
EMBL:AK222472 EMBL:BC005854 EMBL:BC050538 IPI:IPI00550335
RefSeq:NP_060816.1 UniGene:Hs.8033 ProteinModelPortal:Q9HA92
SMR:Q9HA92 IntAct:Q9HA92 STRING:Q9HA92 DMDM:145566941 PRIDE:Q9HA92
Ensembl:ENST00000258955 GeneID:55316 KEGG:hsa:55316 UCSC:uc002iqw.1
GeneCards:GC17P048556 HGNC:HGNC:25634 HPA:HPA022436 HPA:HPA022967
neXtProt:NX_Q9HA92 PharmGKB:PA134945325 InParanoid:Q9HA92
PhylomeDB:Q9HA92 GenomeRNAi:55316 NextBio:59563 ArrayExpress:Q9HA92
Bgee:Q9HA92 CleanEx:HS_RSAD1 Genevestigator:Q9HA92 Uniprot:Q9HA92
Length = 442
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/302 (28%), Positives = 146/302 (48%)
Query: 30 SSTSEATQPVR--QNASTKITPQLSPTSA--YIHLPFCRKRCHYCDFPIVALGSSPTQTN 85
++ + A Q R +NA +P+ + A Y+H P+C KRC YC+F P +
Sbjct: 12 AAAARAAQRRRRVENAGGSPSPEPAGRRAALYVHWPYCEKRCSYCNFNKYI----PRRL- 66
Query: 86 DDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFG 145
++ + + + ++ + +E+VFFGGGTPSL P V+++L+ +
Sbjct: 67 -EEAAMQKCLVTEAQTLLRLSGVQR----VESVFFGGGTPSLASPHTVAAVLEAVAQAAH 121
Query: 146 LSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAI 205
L D E+++E +P + ++ E GVNR+S+G+Q+ D L+ GR H + +
Sbjct: 122 LPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRTL 181
Query: 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYT 265
+ S+DL+ LP Q W L+ + H+S+Y L +E+GT
Sbjct: 182 AEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQ 241
Query: 266 PGEFPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGL 325
G P P +A Y+ ++L AG+ YE+S++ +G HN TYW+ + G G
Sbjct: 242 RGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLGVGP 301
Query: 326 GS 327
G+
Sbjct: 302 GA 303
>TIGR_CMR|CJE_0683 [details] [associations]
symbol:CJE_0683 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:195099 "Campylobacter jejuni RM1221"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
KO:K02495 TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 PIR:C81405
RefSeq:YP_178695.1 ProteinModelPortal:Q5HVJ0 STRING:Q5HVJ0
GeneID:3231995 KEGG:cjr:CJE0683 PATRIC:20043094 OMA:LAYWGAK
ProtClustDB:PRK08446 BioCyc:CJEJ195099:GJC0-700-MONOMER
Uniprot:Q5HVJ0
Length = 355
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 96/334 (28%), Positives = 156/334 (46%)
Query: 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREII-ATKPGHKTSPPL 115
YIH+PFC +C+YC F + + ND + Y + L +I+ K + S +
Sbjct: 4 YIHIPFCESKCNYCAF-------TSLKKNDYEKA---YFKALKEDIVFQLKQFNIQSNQI 53
Query: 116 ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVN 175
+T+F GGGTPS V I L L + EIS E +P + ++ + +LGVN
Sbjct: 54 KTLFIGGGTPSCVNAYNYEDIFKILYPL--LDKNVEISCEANPNSATLNWLKNMKNLGVN 111
Query: 176 RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE-E 234
R+S GVQ+F + L GR H + + + +E G +N +LDLI +M E E
Sbjct: 112 RISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDTKLDNKKMLEFE 171
Query: 235 SLR-RTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293
L + + H+S Y+L +E T F F + + N + L +
Sbjct: 172 LLHLKQIKDLITHLSAYNLTIESNTAFA---KKEHF----KKNAPNLMKFFIKQLLELDF 224
Query: 294 RHYEISSYGEDGYE-CKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNL 352
YEIS++ + + CKHNL YW+ K + GL + + RF + +K +Y++N
Sbjct: 225 FQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLK---NYIENP 281
Query: 353 EAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVD 386
++ + +KDL ++ L L R+ G+D
Sbjct: 282 TFRSIE-----QLSSKDLNLEHLFLGLRSIVGID 310
>DICTYBASE|DDB_G0280411 [details] [associations]
symbol:DDB_G0280411 "radical S-adenosyl methionine
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
dictyBase:DDB_G0280411 GO:GO:0005739 GenomeReviews:CM000152_GR
GO:GO:0046872 GO:GO:0051539 GO:GO:0006779 EMBL:AAFI02000036
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
RefSeq:XP_641161.1 ProteinModelPortal:Q54VE8 STRING:Q54VE8
EnsemblProtists:DDB0205185 GeneID:8622541 KEGG:ddi:DDB_G0280411
OMA:WLGQLQE ProtClustDB:CLSZ2430610 Uniprot:Q54VE8
Length = 446
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 97/297 (32%), Positives = 150/297 (50%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK-- 110
P S +++ P+C K C YC+F S +S ++ + I +
Sbjct: 24 PISLFVYWPYCSKICPYCNFNKYR-DSDKVDHERMSKSLSRELESFVKNIYLNSNENSFI 82
Query: 111 TSPPLETVFFGGGTPSLVP-PRFVSSILDTLTDKFGLSL---DAEISMEMDPGTFDARKM 166
P+ +++FGGGTPSL FV +I +T+ F SL D EI++E++P D + +
Sbjct: 83 RERPITSIYFGGGTPSLAKISTFVETI-ETMKKLFPSSLSIEDIEITLEVNPDQKDLKNL 141
Query: 167 EELMD----LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS 222
L D +GVNRVSLGVQ+ D+ L GR H + E+I+I + ++ + DLI
Sbjct: 142 --LKDFKKYVGVNRVSLGVQSLVDKDLHFLGRTHNRIQAEESIKIARDL-FDHVTFDLIY 198
Query: 223 SLP-HQTPQMWEESLRRTVGAQPK--HVSVYDLQVEQGTKF-GILYTPG-EFPL--PTET 275
S QT + W LR + HVS+Y L EQGT F L + G +F + P +
Sbjct: 199 SRTIDQTLEQWRNELRYALNLADGNGHVSLYTLTFEQGTSFYRRLSSKGNKFKIIPPDDQ 258
Query: 276 QSANFYRMASSMLSSAGYRHYEISSYGED-GYECKHNLTYWKNKPFYGFGLGSASYL 331
+S++ Y + + G++ YEISS+ + KHNL YW++ F G G G++S L
Sbjct: 259 KSSDLYDLTVCEAEAMGFQQYEISSFASSHNQKGKHNLNYWRSGDFIGIGPGASSRL 315
>TIGR_CMR|SPO_3532 [details] [associations]
symbol:SPO_3532 "oxygen-independent coproporphyrinogen III
oxidase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
HOGENOM:HOG000257214 KO:K02495 ProtClustDB:PRK09249
TIGRFAMs:TIGR00538 RefSeq:YP_168727.1 ProteinModelPortal:Q5LMN1
GeneID:3193999 KEGG:sil:SPO3532 PATRIC:23380535 OMA:ISRFPQG
Uniprot:Q5LMN1
Length = 451
Score = 326 (119.8 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 91/306 (29%), Positives = 146/306 (47%)
Query: 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKT 111
S S Y+H+PFCR+ C +C A + TQT D+P ++ Y+ L E+
Sbjct: 49 SAISLYVHVPFCRRLCWFC-----ACRTQGTQT--DNPVIA-YVDTLKAELALLAERLPE 100
Query: 112 SPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMD 171
L + +GGGTP+L+ P + + ++ D L +AE S+E+DP D +++ L +
Sbjct: 101 GVHLSRLHWGGGTPTLLNPELMRGLARSIFDTVPLGPEAEFSVEIDPNEIDPARLDALAE 160
Query: 172 LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM 231
G+NR S+GVQ F DE+ K+ GR G +A+E+++ G+ + + D++ LPHQT
Sbjct: 161 AGMNRASIGVQDFDDEIQKTIGRIQGYDVTRDAVEMIRARGIYSLNADILYGLPHQTRAR 220
Query: 232 WEESLRRTVGAQPKHVSVYDL-QVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290
ES+++ + P V++Y V K L P + LPT Q + + A +
Sbjct: 221 MTESVQKLLSLNPDRVALYGYAHVPWMAKRQQLI-PSD-ALPTPEQRLDLFDTARRLFMW 278
Query: 291 AGYRHYEISSYG--EDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDY 348
Y I + EDG + T + F G+ A L G+ S R + Y
Sbjct: 279 DNYAEIGIDHFATQEDGLT-RALKTGKLRRNFQGYTDDQAEVLIGVGASSISRFPQ--GY 335
Query: 349 VQNLEA 354
QN A
Sbjct: 336 AQNAPA 341
>TIGR_CMR|SO_4730 [details] [associations]
symbol:SO_4730 "oxygen-independent coproporphyrinogen III
oxidase" species:211586 "Shewanella oneidensis MR-1" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
RefSeq:NP_720246.1 HSSP:P32131 ProteinModelPortal:Q8E8D5
GeneID:1172309 KEGG:son:SO_4730 PATRIC:23529123 Uniprot:Q8E8D5
Length = 458
Score = 288 (106.4 bits), Expect = 3.6e-23, P = 3.6e-23
Identities = 83/313 (26%), Positives = 140/313 (44%)
Query: 41 QNASTKITPQLSPT-SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLC 99
QN T I S S YIH+PFC K C+YC G + T + YI+ L
Sbjct: 40 QNLLTAIENSKSDKLSLYIHIPFCAKLCYYC-------GCNKVITRHAH-KADQYIEYLS 91
Query: 100 REIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG 159
EII P K + + +GGGTP+ + P + + + F + + E S+E+DP
Sbjct: 92 HEIIKRAPLFKHYSVTQ-MHWGGGTPTFLNPEQIIKLTALIKANFNFADEGEFSIEVDPR 150
Query: 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219
+ ++ L + G NR+S+GVQ F E+ + R + +++ + K G + ++D
Sbjct: 151 EIELSMLDTLKEAGFNRISIGVQDFNKEVQVAVNREQDEQFIFDLMAKAKAMGFVSTNID 210
Query: 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSAN 279
LI LPHQTP+ + +++R + P +SV++ +F + LP+ Q
Sbjct: 211 LIYGLPHQTPETFAATMQRVLDLSPDRLSVFNY-AHLPARFAAQRKIKDEHLPSPKQKLE 269
Query: 280 FYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWK-NKPFYGFGLGSASYLGGLRFSR 338
L+ AGY++ + + + E K ++ F G+ L GL S
Sbjct: 270 MLHQTIETLTGAGYQYIGMDHFAKPDDELAKLQREGKLHRNFQGYTTQEECDLLGLGVSS 329
Query: 339 PRRMKEFVDYVQN 351
++ + Y QN
Sbjct: 330 ISQIGDC--YAQN 340
>UNIPROTKB|Q9KVM5 [details] [associations]
symbol:VC_0116 "Oxygen-independent coproporphyrinogen III
oxidase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004109 "coproporphyrinogen oxidase activity"
evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004558
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249 InterPro:IPR010723
Pfam:PF06969 TIGRFAMs:TIGR00538 HSSP:P32131 PIR:B82362
RefSeq:NP_229775.1 ProteinModelPortal:Q9KVM5 SMR:Q9KVM5
DNASU:2614871 GeneID:2614871 KEGG:vch:VC0116 PATRIC:20079276
Uniprot:Q9KVM5
Length = 480
Score = 288 (106.4 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 96/384 (25%), Positives = 166/384 (43%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S YIH+PFC K C+YC G + T + Y+ +L EI +
Sbjct: 75 PLSLYIHIPFCHKLCYYC-------GCNKVITRHSH-KADEYLDVLEHEI-RQRASLLIG 125
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ + FGGGTP+ + +S ++ L +F + +AEIS+E+DP ++ L
Sbjct: 126 RNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFADEAEISIEIDPREIQLEVLDHLRQE 185
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G NRVS+GVQ F E+ K R + +++ +E K G + +LDLI LP QT +
Sbjct: 186 GFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLVERAKQLGFRSTNLDLIYGLPKQTAVTF 245
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
++L++ + QP +SV++ F E LP + + + L+ AG
Sbjct: 246 AQTLQQVLTMQPGRLSVFNY-AHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAG 304
Query: 293 YR-----HY-----EISSYGEDGYECKHNLTYWKNKP--FYGFGLGSASYLGGLRFSRPR 340
Y+ H+ E++ G ++ Y GFG+ + S +G +
Sbjct: 305 YQFIGMDHFALPDDELAIAQRSGILHRNFQGYTTQGECDLVGFGVSAISMVGDAYAQNQK 364
Query: 341 RMKEFVDYVQNLEAGLVDCWGNNHIDAKDL----AMDVLMLSFRTARGVDLKSFGETFGC 396
+K++ V + L W +D DL + L+ +F+ + + F F
Sbjct: 365 ELKKYYAQVNEMRHAL---WKGVTLDKDDLLRREVIKQLICNFKLDKTAIEREFNLRFNH 421
Query: 397 SLVHTLCKAYKPYIESGHVICLDE 420
L + +I+ G ++ +DE
Sbjct: 422 YFRQDLA-LLQTFIDDG-LVTVDE 443
>TIGR_CMR|VC_0116 [details] [associations]
symbol:VC_0116 "oxygen-independent coproporphyrinogen III
oxidase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
OMA:HILNLMC ProtClustDB:PRK09249 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00538 HSSP:P32131 PIR:B82362 RefSeq:NP_229775.1
ProteinModelPortal:Q9KVM5 SMR:Q9KVM5 DNASU:2614871 GeneID:2614871
KEGG:vch:VC0116 PATRIC:20079276 Uniprot:Q9KVM5
Length = 480
Score = 288 (106.4 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 96/384 (25%), Positives = 166/384 (43%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S YIH+PFC K C+YC G + T + Y+ +L EI +
Sbjct: 75 PLSLYIHIPFCHKLCYYC-------GCNKVITRHSH-KADEYLDVLEHEI-RQRASLLIG 125
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ + FGGGTP+ + +S ++ L +F + +AEIS+E+DP ++ L
Sbjct: 126 RNVTQLHFGGGTPTFLTNAQISRLMTLLHSEFHFADEAEISIEIDPREIQLEVLDHLRQE 185
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G NRVS+GVQ F E+ K R + +++ +E K G + +LDLI LP QT +
Sbjct: 186 GFNRVSIGVQDFNKEVQKLVNREQDEQFIFDLVERAKQLGFRSTNLDLIYGLPKQTAVTF 245
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
++L++ + QP +SV++ F E LP + + + L+ AG
Sbjct: 246 AQTLQQVLTMQPGRLSVFNY-AHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAG 304
Query: 293 YR-----HY-----EISSYGEDGYECKHNLTYWKNKP--FYGFGLGSASYLGGLRFSRPR 340
Y+ H+ E++ G ++ Y GFG+ + S +G +
Sbjct: 305 YQFIGMDHFALPDDELAIAQRSGILHRNFQGYTTQGECDLVGFGVSAISMVGDAYAQNQK 364
Query: 341 RMKEFVDYVQNLEAGLVDCWGNNHIDAKDL----AMDVLMLSFRTARGVDLKSFGETFGC 396
+K++ V + L W +D DL + L+ +F+ + + F F
Sbjct: 365 ELKKYYAQVNEMRHAL---WKGVTLDKDDLLRREVIKQLICNFKLDKTAIEREFNLRFNH 421
Query: 397 SLVHTLCKAYKPYIESGHVICLDE 420
L + +I+ G ++ +DE
Sbjct: 422 YFRQDLA-LLQTFIDDG-LVTVDE 443
>UNIPROTKB|P32131 [details] [associations]
symbol:hemN "coproporphyrinogen III dehydrogenase"
species:83333 "Escherichia coli K-12" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA] [GO:0019353
"protoporphyrinogen IX biosynthetic process from glutamate"
evidence=IGI] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0051989 "coproporphyrinogen dehydrogenase
activity" evidence=IEA;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 UniPathway:UPA00251 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 EMBL:L19201
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0019353 GO:GO:0004109
EMBL:D16509 EMBL:X82073 RefSeq:NP_418303.2 RefSeq:YP_491583.1
PDB:1OLT PDBsum:1OLT ProteinModelPortal:P32131 SMR:P32131
DIP:DIP-9887N IntAct:P32131 PRIDE:P32131
EnsemblBacteria:EBESCT00000002593 EnsemblBacteria:EBESCT00000015724
GeneID:12933633 GeneID:948362 KEGG:ecj:Y75_p3319 KEGG:eco:b3867
PATRIC:32123235 EchoBASE:EB1782 EcoGene:EG11836 eggNOG:COG0635
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
BioCyc:EcoCyc:HEMN-MONOMER BioCyc:ECOL316407:JW3838-MONOMER
BioCyc:MetaCyc:HEMN-MONOMER EvolutionaryTrace:P32131
Genevestigator:P32131 GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00538 Uniprot:P32131
Length = 457
Score = 271 (100.5 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 76/309 (24%), Positives = 141/309 (45%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y+H+PFC K C++C G + T + Y+ L +EI+ P
Sbjct: 52 PLSLYVHIPFCHKLCYFC-------GCNKIVTRQQH-KADQYLDALEQEIVHRAPLF-AG 102
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ + +GGGTP+ + +S ++ L + F + DAEIS+E+DP + ++ L
Sbjct: 103 RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAE 162
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G NR+S+GVQ F E+ + R + ++ + + G + ++DLI LP QTP+ +
Sbjct: 163 GFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESF 222
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
+L+R P +SV++ T F + LP+ Q + + + L+ +G
Sbjct: 223 AFTLKRVAELNPDRLSVFNY-AHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSG 281
Query: 293 YR-----HY-----EISSYGEDGYECKH--NLTYWKNKPFYGFGLGSASYLGGLRFSRPR 340
Y+ H+ E++ +G ++ T + G G+ + S +G +
Sbjct: 282 YQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQK 341
Query: 341 RMKEFVDYV 349
+K++ V
Sbjct: 342 ELKQYYQQV 350
>UNIPROTKB|Q9KL39 [details] [associations]
symbol:VCA0909 "Oxygen-independent coproporphyrinogen III
oxidase, putative" species:243277 "Vibrio cholerae O1 biovar El Tor
str. N16961" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0003824
GO:GO:0008152 GO:GO:0051536 GenomeReviews:AE003853_GR
Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495 EMBL:AE004418
PIR:C82403 RefSeq:NP_233294.1 ProteinModelPortal:Q9KL39
DNASU:2612225 GeneID:2612225 KEGG:vch:VCA0909 PATRIC:20086354
OMA:LSVNHWA ProtClustDB:PRK09058 InterPro:IPR026332
TIGRFAMs:TIGR04107 Uniprot:Q9KL39
Length = 455
Score = 265 (98.3 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 95/360 (26%), Positives = 154/360 (42%)
Query: 10 FSTSPLKPRTPKLLRSYLISSSTSEA---TQPV----RQNASTKITPQLSPTSA----YI 58
F S L TP LR + ++ A PV + N IT Q+S YI
Sbjct: 9 FDESILGANTPDPLRFAFQNKHSAHAGGIAMPVPSHEQANVWQHITQQVSQRQQVRCLYI 68
Query: 59 HLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREII--ATKPGHKTSPPLE 116
H+PFCR RC +C+F Q V Y L EI A P +T
Sbjct: 69 HVPFCRVRCTFCNF---------FQNAASRQLVDAYFAALLEEIKQKAALPWTQTGV-FH 118
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
V+ GGGTP+ + P + + + + F L+ D EI++E F E ++ G NR
Sbjct: 119 AVYIGGGTPTELSPEQIRQLGTAIRESFPLTPDCEITLEGRIHRFSDEMFENALEGGFNR 178
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236
S GVQ+F ++ + R + V E I + +DL+ LP+QT Q++E+ L
Sbjct: 179 FSFGVQSFNTQVRRRAKRLDDREVVMERIASLAATQQAPIVIDLLYGLPYQTAQVFEQDL 238
Query: 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTET-QSANFYRMASSMLSSAGYRH 295
+ + + + +Y L V L G+ P P T A+ Y++ ++ R
Sbjct: 239 QDFMQTGAQGIDLYQLVVGGSAPMLNLVEKGKLPPPATTPDKASLYQIGVEFMAKHHLRP 298
Query: 296 YEISSYGEDGYECK--HNL--TYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQN 351
++ + D E ++L TY + P G G+ +GG + R++ ++D ++N
Sbjct: 299 LSVNHWTRDNRERSLYNSLAKTYAEVLPI---GCGAGGNMGGYSLMQHRQLDTYLDAMKN 355
>TIGR_CMR|VC_A0909 [details] [associations]
symbol:VC_A0909 "hutW protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0003824 GO:GO:0008152 GO:GO:0051536 GenomeReviews:AE003853_GR
Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495 EMBL:AE004418
PIR:C82403 RefSeq:NP_233294.1 ProteinModelPortal:Q9KL39
DNASU:2612225 GeneID:2612225 KEGG:vch:VCA0909 PATRIC:20086354
OMA:LSVNHWA ProtClustDB:PRK09058 InterPro:IPR026332
TIGRFAMs:TIGR04107 Uniprot:Q9KL39
Length = 455
Score = 265 (98.3 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 95/360 (26%), Positives = 154/360 (42%)
Query: 10 FSTSPLKPRTPKLLRSYLISSSTSEA---TQPV----RQNASTKITPQLSPTSA----YI 58
F S L TP LR + ++ A PV + N IT Q+S YI
Sbjct: 9 FDESILGANTPDPLRFAFQNKHSAHAGGIAMPVPSHEQANVWQHITQQVSQRQQVRCLYI 68
Query: 59 HLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREII--ATKPGHKTSPPLE 116
H+PFCR RC +C+F Q V Y L EI A P +T
Sbjct: 69 HVPFCRVRCTFCNF---------FQNAASRQLVDAYFAALLEEIKQKAALPWTQTGV-FH 118
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
V+ GGGTP+ + P + + + + F L+ D EI++E F E ++ G NR
Sbjct: 119 AVYIGGGTPTELSPEQIRQLGTAIRESFPLTPDCEITLEGRIHRFSDEMFENALEGGFNR 178
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236
S GVQ+F ++ + R + V E I + +DL+ LP+QT Q++E+ L
Sbjct: 179 FSFGVQSFNTQVRRRAKRLDDREVVMERIASLAATQQAPIVIDLLYGLPYQTAQVFEQDL 238
Query: 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTET-QSANFYRMASSMLSSAGYRH 295
+ + + + +Y L V L G+ P P T A+ Y++ ++ R
Sbjct: 239 QDFMQTGAQGIDLYQLVVGGSAPMLNLVEKGKLPPPATTPDKASLYQIGVEFMAKHHLRP 298
Query: 296 YEISSYGEDGYECK--HNL--TYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQN 351
++ + D E ++L TY + P G G+ +GG + R++ ++D ++N
Sbjct: 299 LSVNHWTRDNRERSLYNSLAKTYAEVLPI---GCGAGGNMGGYSLMQHRQLDTYLDAMKN 355
>TIGR_CMR|CJE_1072 [details] [associations]
symbol:CJE_1072 "oxygen-independent coproporphyrinogen III
oxidase" species:195099 "Campylobacter jejuni RM1221" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
RefSeq:YP_179065.1 ProteinModelPortal:Q5HUH0 STRING:Q5HUH0
GeneID:3231581 KEGG:cjr:CJE1072 PATRIC:20043953
BioCyc:CJEJ195099:GJC0-1098-MONOMER Uniprot:Q5HUH0
Length = 451
Score = 263 (97.6 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 91/398 (22%), Positives = 174/398 (43%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPP 114
S Y HLPFCR C++C G + T ++ + Y+ + +E+ T
Sbjct: 47 SLYFHLPFCRSACYFC-------GCNVIYTAKEESK-ERYLTYIFKELDILSTILDTKRE 98
Query: 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFG-LSLDAEISMEMDPGTFDARKMEELMDLG 173
+ + FGGGTP+ + + +++ + FG S D EIS E+DP + + L G
Sbjct: 99 VVQMHFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDVEISCEIDPRFLNEEQATVLTQNG 158
Query: 174 VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233
NR+S GVQ F +++ K R + A+ +V+ G+++ ++DLI LP+Q Q +
Sbjct: 159 FNRISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT 218
Query: 234 ESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293
++L + + P +++++ K + E LP+ LS GY
Sbjct: 219 QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFD-ENTLPSPDVKLEILEFCEKFLSKNGY 277
Query: 294 RHYEISSYGEDG---YECKHNLTYWKNKPFYGFGL-GSASYLG-GLR-FSRPRR-----M 342
+ + + ++ ++ N T +N F G+ G A +G GL +R
Sbjct: 278 KMIGMDHFAKENDELFKALENGTLHRN--FQGYTTKGGADLVGIGLTSIGEGQRHYAQNF 335
Query: 343 KEFVDYVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTL 402
K+ Y L+ G++ + D +++ +D+KS + F
Sbjct: 336 KDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEF-------- 387
Query: 403 CKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKI 440
C ++ Y + + L+E++ +N +E N + ++ET +
Sbjct: 388 CIDFQEYFKED-LKALEEYKDFINFDE-NFIKVNETGV 423
>TIGR_CMR|CPS_4823 [details] [associations]
symbol:CPS_4823 "oxygen-independent coproporphyrinogen III
oxidase" species:167879 "Colwellia psychrerythraea 34H" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
RefSeq:YP_271462.1 ProteinModelPortal:Q47UR0 SMR:Q47UR0
STRING:Q47UR0 GeneID:3518837 KEGG:cps:CPS_4823 PATRIC:21472461
BioCyc:CPSY167879:GI48-4824-MONOMER Uniprot:Q47UR0
Length = 456
Score = 241 (89.9 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 79/309 (25%), Positives = 141/309 (45%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPP 114
S Y+H+PFC C+YC G + T + Y++ L +EI P +
Sbjct: 53 SLYVHIPFCHTLCYYC-------GCNKVITRHRG-KADTYLEYLAQEIALQAPLFEEYT- 103
Query: 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174
++ + +GGGTPS + ++ ++ L +KF S + E+S+E+DP + E L LG
Sbjct: 104 VKQLHWGGGTPSFLTHPQITQLVSLLKEKFNFSDELEMSIEIDPREIEMDLAEHLYSLGF 163
Query: 175 NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234
NR+SLGVQ ++ ++ R + + + I+ K G ++ ++DLI LPHQT + + +
Sbjct: 164 NRLSLGVQDLDLKVQQAINRVQSTEFIGDFIQHAKEVGFKSINIDLIYGLPHQTLENFTK 223
Query: 235 SLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294
+L + +S++ ++F + LP+ + ++A L GY
Sbjct: 224 TLVKAHEWDVDRISLFSY-AHIPSRFAAQRKLRDEWLPSTQEKFALMKLAIETLCDFGYD 282
Query: 295 -----HY-----EISSYGEDGYECKHNLTYWKNK---PFYGFGLGSASYLGGLRFSRPRR 341
H+ E++ DG N + K G G+ S S +G FS+
Sbjct: 283 FIGMDHFAKPNDELAIAQSDG-TLHRNFQGYTTKGGCDLLGLGVSSISSIGN-SFSQ--N 338
Query: 342 MKEFVDYVQ 350
+K+ +Y Q
Sbjct: 339 IKDLKEYYQ 347
>TIGR_CMR|BA_0875 [details] [associations]
symbol:BA_0875 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0008152
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495
RefSeq:NP_843387.1 RefSeq:YP_017511.1 ProteinModelPortal:Q81UJ4
DNASU:1088750 EnsemblBacteria:EBBACT00000012337
EnsemblBacteria:EBBACT00000015974 GeneID:1088750 GeneID:2815394
KEGG:ban:BA_0875 KEGG:bar:GBAA_0875 PATRIC:18779392
HOGENOM:HOG000057172 OMA:TGIRPTK ProtClustDB:PRK08207
BioCyc:BANT261594:GJ7F-941-MONOMER InterPro:IPR023995
TIGRFAMs:TIGR03994 Uniprot:Q81UJ4
Length = 496
Score = 232 (86.7 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 64/245 (26%), Positives = 119/245 (48%)
Query: 21 KLLRSYLISSSTSEATQPVRQNASTKITPQL----SPTSAYIHLPFCRKRCHYCDFPIVA 76
+L SYLI E Q + + + P L S YI +PFC +C YC FP A
Sbjct: 136 ELRESYLIHEEKIELLQRI-VDCQLAVVPDLYRLKEEVSIYIGIPFCPTKCAYCTFPAYA 194
Query: 77 LGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSI 136
+ Q + D + ++ REI K + + T+++GGGTP+ + + +
Sbjct: 195 INGR--QGSVDSFLGGLHYEV--REI--GKFLKEKGVTVTTIYYGGGTPTSITAEEMDML 248
Query: 137 LDTLTDKF-GLSLDAEISMEMD-PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194
+ + + F + E+++E P T K+E L ++R+S+ Q++ E LK+ GR
Sbjct: 249 YEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETLKAIGR 308
Query: 195 AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254
H ++E E + + G+ N ++DLI LP + +++ +L T P+ ++V+ L
Sbjct: 309 HHTVEETIEKYHLAREMGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESLTVHTLSF 368
Query: 255 EQGTK 259
++ ++
Sbjct: 369 KRASE 373
>TIGR_CMR|SO_4520 [details] [associations]
symbol:SO_4520 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:211586 "Shewanella oneidensis MR-1"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0051989 KO:K00224
HOGENOM:HOG000001637 OMA:CHTLCSF ProtClustDB:PRK08629
RefSeq:NP_720040.1 ProteinModelPortal:Q8E8Y0 GeneID:1172110
KEGG:son:SO_4520 PATRIC:23528707 Uniprot:Q8E8Y0
Length = 445
Score = 194 (73.4 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 75/296 (25%), Positives = 137/296 (46%)
Query: 116 ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVN 175
E+++ GGGT +++ +I T F S+ E+S E DP D+ ++L L V+
Sbjct: 111 ESMYIGGGTTTVLEDELARTIEHAKT-LFP-SIK-EVSCESDPQHLDSPGFKQLKGL-VD 166
Query: 176 RVSLGVQAFQDELLKSCGRAHGL---KEVYEAIEIVK-LCGVENWSLDLISSLPHQTPQM 231
R+S+GVQ+F D++LK R ++ ++ I K L + N +DLI QT ++
Sbjct: 167 RMSIGVQSFNDDILKMTDRLEKFGTGQQTFDKIMAAKELFPIIN--VDLIFGFRGQTDEV 224
Query: 232 WEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291
+ L P+ ++ Y L + T+ + G+ P + AN YR + L+
Sbjct: 225 IQHDLDMASRLDPRQITTYPLMITHQTRKSV---KGKLAAP-QADMANQYRQILNSLNGQ 280
Query: 292 GYRHYEISSYG---EDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDY 348
Y ++G ++G++ ++ + Y + G G GS S+L + +++ Y
Sbjct: 281 -YNQLSAWAFGKANDEGFD-EYVIDY---DEYLGVGSGSFSFLNDTLYVNTFSLRK---Y 332
Query: 349 VQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCK 404
+ + AG + + + KD+ +L + R + K F ETFG +L L K
Sbjct: 333 QERIAAGKMGVEQQKNYNKKDVMQYRFLLGMFSGR-LSRKYFRETFGVNLDTALFK 387
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 58/208 (27%), Positives = 95/208 (45%)
Query: 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKP-GHKTSPPL 115
Y H+PFC C YC F +D R Y L +E+ K G+
Sbjct: 64 YAHVPFCHTLCSYCTFHRFMF-------KEDKARA--YFISLRKEMEMVKALGYD----F 110
Query: 116 ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVN 175
E+++ GGGT +++ +I T F S+ E+S E DP D+ ++L L V+
Sbjct: 111 ESMYIGGGTTTVLEDELARTIEHAKT-LFP-SIK-EVSCESDPQHLDSPGFKQLKGL-VD 166
Query: 176 RVSLGVQAFQDELLKSCGRAHGL---KEVYEAIEIVK-LCGVENWSLDLISSLPHQTPQM 231
R+S+GVQ+F D++LK R ++ ++ I K L + N +DLI QT ++
Sbjct: 167 RMSIGVQSFNDDILKMTDRLEKFGTGQQTFDKIMAAKELFPIIN--VDLIFGFRGQTDEV 224
Query: 232 WEESLRRTVGAQPKHVSVYDLQVEQGTK 259
+ L P+ ++ Y L + T+
Sbjct: 225 IQHDLDMASRLDPRQITTYPLMITHQTR 252
>TIGR_CMR|CJE_0412 [details] [associations]
symbol:CJE_0412 "radical SAM domain protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:3.80.30.20
InterPro:IPR023404 eggNOG:COG0635 KO:K00224 RefSeq:YP_178431.1
ProteinModelPortal:Q5HWA4 STRING:Q5HWA4 GeneID:3231174
KEGG:cjr:CJE0412 PATRIC:20042524 HOGENOM:HOG000001637 OMA:CHTLCSF
ProtClustDB:PRK08629 BioCyc:CJEJ195099:GJC0-417-MONOMER
Uniprot:Q5HWA4
Length = 456
Score = 169 (64.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 67/287 (23%), Positives = 121/287 (42%)
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
+++ GGGT +L+ + L+ F + EIS E DP D K+ + ++R
Sbjct: 94 SMYVGGGT-TLIDEEELLKTLELCKKLFNIK---EISCESDPNHIDPNKLSMFKGI-IDR 148
Query: 177 VSLGVQAFQDELLKSCGRAHGL---KEVYEAIEIVKLCGV-ENWSLDLISSLPHQTPQMW 232
+S G+Q+F DE LK R + KE+ E I K G+ +S+DLI +LP Q +
Sbjct: 149 LSCGIQSFDDETLKKVARYNKFGSSKELQEKIS--KALGILPIFSIDLIFNLPGQNEKQL 206
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
L P+ ++ Y L TK I + G + + +Y++
Sbjct: 207 LNDLEIAKNLAPQQITTYPLMKSNLTKDNIAKSLG---VSIKDNEFTYYQIIREFFKD-- 261
Query: 293 YRHYEISSYGEDGYECKHNLTYWKNKPFY-GFGLGSASYLGGLRFSRPRRMKEFVDYVQN 351
Y S+ + + K N Y + Y G G G+ S+L G + ++ ++Q
Sbjct: 262 YTQNNGWSFSLE--KNKLNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQE 319
Query: 352 LEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSL 398
+ + D K++ V + + + +++ F +T C+L
Sbjct: 320 KQNANI---AKACFDKKEIIKYVFLTEIFSGK-IEIDKFNKTLNCNL 362
>UNIPROTKB|Q74AX2 [details] [associations]
symbol:GSU2227 "Radical SAM domain iron-sulfur
cluster-binding oxidoreductase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0003824
GO:GO:0008152 GO:GO:0051536 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.80.30.20 InterPro:IPR023404 RefSeq:NP_953276.1
ProteinModelPortal:Q74AX2 GeneID:2687586 KEGG:gsu:GSU2227
PATRIC:22027309 HOGENOM:HOG000011916 OMA:VIRMGLQ
ProtClustDB:CLSK828767 BioCyc:GSUL243231:GH27-2183-MONOMER
Uniprot:Q74AX2
Length = 342
Score = 143 (55.4 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 42/159 (26%), Positives = 69/159 (43%)
Query: 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG 173
P+E F+GG SL P +L L + + P DA L +G
Sbjct: 53 PVEAAFYGGTFTSL-PRNEQERLLAALQPLRHDGSVRSVRLSTRPDALDAETAGFLKSMG 111
Query: 174 VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233
V V LGVQ+ D++L GR H + A ++++ G+ + L+ LP + +
Sbjct: 112 VASVELGVQSMDDQVLDVSGRGHSAADTVRAFDVLRSEGIAVGA-QLMPGLPGDSRERSL 170
Query: 234 ESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF-PL 271
+SL R + +P + +Y V GT+ + G + PL
Sbjct: 171 DSLTRILDLKPVSLRIYPTLVVAGTRLAEFWAEGSYTPL 209
>TIGR_CMR|GSU_2227 [details] [associations]
symbol:GSU_2227 "radical SAM domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 RefSeq:NP_953276.1 ProteinModelPortal:Q74AX2
GeneID:2687586 KEGG:gsu:GSU2227 PATRIC:22027309
HOGENOM:HOG000011916 OMA:VIRMGLQ ProtClustDB:CLSK828767
BioCyc:GSUL243231:GH27-2183-MONOMER Uniprot:Q74AX2
Length = 342
Score = 143 (55.4 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 42/159 (26%), Positives = 69/159 (43%)
Query: 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG 173
P+E F+GG SL P +L L + + P DA L +G
Sbjct: 53 PVEAAFYGGTFTSL-PRNEQERLLAALQPLRHDGSVRSVRLSTRPDALDAETAGFLKSMG 111
Query: 174 VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233
V V LGVQ+ D++L GR H + A ++++ G+ + L+ LP + +
Sbjct: 112 VASVELGVQSMDDQVLDVSGRGHSAADTVRAFDVLRSEGIAVGA-QLMPGLPGDSRERSL 170
Query: 234 ESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF-PL 271
+SL R + +P + +Y V GT+ + G + PL
Sbjct: 171 DSLTRILDLKPVSLRIYPTLVVAGTRLAEFWAEGSYTPL 209
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 471 471 0.00099 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 622 (66 KB)
Total size of DFA: 299 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.61u 0.15s 39.76t Elapsed: 00:00:02
Total cpu time: 39.62u 0.15s 39.77t Elapsed: 00:00:02
Start: Thu May 9 14:08:31 2013 End: Thu May 9 14:08:33 2013