BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012112
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase-like protein
sll1917 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1917 PE=3 SV=1
Length = 412
Score = 308 bits (788), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 167/423 (39%), Positives = 236/423 (55%), Gaps = 23/423 (5%)
Query: 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK 110
L PT+AYIH+PFCR+RC YCDFPI G Q+ D V Y++ +CREI +
Sbjct: 7 LMPTAAYIHIPFCRQRCFYCDFPIAVTG---FQSLTLDGWVGEYVEAVCREIAGQQ---H 60
Query: 111 TSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELM 170
PL+TVFFGGGTPSL+P + IL + G++ DAEIS+E+DPGTFD +++
Sbjct: 61 QGQPLQTVFFGGGTPSLLPITGLEKILLAVDQYLGIAPDAEISIEIDPGTFDQVQLQGYK 120
Query: 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ 230
+LG+NR SLGVQAFQD LL CGR H +++ +A+ + +ENWSLDLI+ LP QT
Sbjct: 121 NLGINRFSLGVQAFQDNLLALCGRHHRRRDIDQALTAIAKENIENWSLDLITGLPEQTAA 180
Query: 231 MWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290
W SL + A PKH+S YDL +E T F G+ +P +SA+FYR +L+
Sbjct: 181 DWHSSLTLALAAGPKHISCYDLVLEPQTVFDKWEQRGKLAVPPPERSADFYRHGQEVLTQ 240
Query: 291 AGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQ 350
AG+ HYEIS+YG G++C+HN YW+N P+YG G+G+ SY+ G RF RPR + +++
Sbjct: 241 AGFHHYEISNYGRPGHQCRHNQIYWRNLPYYGLGMGATSYIDGKRFGRPRTRNGYYQWLE 300
Query: 351 NLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGV---DLKSFGETFGCSLVHTLCKAYK 407
+ G ++L ++ LML R GV L S +T ++ TL
Sbjct: 301 SWLNQGCPIPGERVSPLENL-LESLMLGLRLTAGVTWAQLPSVNQTEKAKILATLTS--- 356
Query: 408 PYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHAFG 467
+ R E N +L + F +DPEG L SN+++S F
Sbjct: 357 ----------FGDRRWLEFYGEDNQMLAPNQTTTETVQRFCFTDPEGILYSNQILSALFA 406
Query: 468 VID 470
++
Sbjct: 407 ALE 409
>sp|P54304|HEMN_BACSU Oxygen-independent coproporphyrinogen-III oxidase 1 OS=Bacillus
subtilis (strain 168) GN=hemN PE=2 SV=3
Length = 379
Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 188/363 (51%), Gaps = 20/363 (5%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIAT--KPGHKTS 112
SAYIH+PFC CHYCDF + S P V Y+ L +E+I T K G
Sbjct: 3 SAYIHIPFCEHICHYCDFNKYFIQSQP---------VDEYLNALEQEMINTIAKTG---Q 50
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLD-AEISMEMDPGTFDARKMEELMD 171
P L+T+F GGGTP+ + + ++D + S D +E ++E +P A K++ L +
Sbjct: 51 PDLKTIFIGGGTPTSLSEEQLKKLMDMINRVLKPSSDLSEFAVEANPDDLSAEKLKILKE 110
Query: 172 LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM 231
GVNR+S GVQ F+D+LL+ GR H K+V+ + E + G EN SLDL+ LP QT +
Sbjct: 111 AGVNRLSFGVQTFEDDLLEKIGRVHKQKDVFTSFERAREIGFENISLDLMFGLPGQTLKH 170
Query: 232 WEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291
E S+ + +H SVY L VE T F L G LP + Q A Y + S + +
Sbjct: 171 LEHSINTALSLDAEHYSVYSLIVEPKTVFYNLMQKGRLHLPPQEQEAEMYEIVMSKMEAH 230
Query: 292 GYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQN 351
G YEIS++ + G E KHNLTYW N+ ++GFG G+ Y+GG R +K ++D +
Sbjct: 231 GIHQYEISNFAKAGMESKHNLTYWSNEQYFGFGAGAHGYIGGTRTVNVGPVKHYIDLIA- 289
Query: 352 LEAGLVDCWGNNH-IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYI 410
E G + + H + ++ + + L R GV K F E +G SL K
Sbjct: 290 -EKGF--PYRDTHEVTTEEQIEEEMFLGLRKTAGVSKKRFAEKYGRSLDGLFPSVLKDLA 346
Query: 411 ESG 413
E G
Sbjct: 347 EKG 349
>sp|P52062|YGGW_ECOLI Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
OS=Escherichia coli (strain K12) GN=yggW PE=3 SV=1
Length = 378
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 162/283 (57%), Gaps = 23/283 (8%)
Query: 50 QLSPTSAYIHLPFCRKRCHYCDFPIVAL-GSSPTQTNDDDPRVSNYIQLLCREI---IAT 105
+L P S YIH+P+C ++C YCDF AL G P +DD Y+Q L ++ +A
Sbjct: 3 KLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVP---HDD------YVQHLLNDLDNDVAY 53
Query: 106 KPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK 165
G + ++T+F GGGTPSL+ + ++LD + + L+ DAEI+ME +PGT +A +
Sbjct: 54 AQGRE----VKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANPGTVEADR 109
Query: 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP 225
+ GVNR+S+GVQ+F +E LK GR HG +E A ++ G+ +++LDL+ LP
Sbjct: 110 FVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLP 169
Query: 226 HQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP-LPTETQSANFYRMA 284
Q+ + LR+ + P H+S Y L +E T FG P LP + + +
Sbjct: 170 DQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFG-----SRPPVLPDDDALWDIFEQG 224
Query: 285 SSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
+L++AGY+ YE S+Y + GY+C+HNL YW+ + G G G+
Sbjct: 225 HQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGA 267
>sp|P43899|Y463_HAEIN Oxygen-independent coproporphyrinogen-III oxidase-like protein
HI_0463 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=HI_0463 PE=3 SV=1
Length = 383
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 186/359 (51%), Gaps = 32/359 (8%)
Query: 49 PQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPG 108
P+L P S YIH+P+C ++C YCDF +S Q +D + +YI L +++ A
Sbjct: 2 PKLPPLSLYIHIPWCVQKCPYCDF------NSHAQKSDIPEQ--DYIYHLLQDLQADLQR 53
Query: 109 HKTS---PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK 165
K S L ++F GGGTPSL ++ +L + + + EI++E +PGT +A +
Sbjct: 54 FKDSIQQRKLHSIFIGGGTPSLFSAESIAYLLKEIKKQIDFEDNIEITLEANPGTVEAER 113
Query: 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP 225
+ + G+ R+S+G+Q+F D+ L+ GR H E A+ + K+ G+++++LDL+ LP
Sbjct: 114 FKGYVSAGIMRISMGIQSFNDDKLQRLGRIHNAAEAKSAVNLAKVSGLKSFNLDLMHGLP 173
Query: 226 HQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285
+QT + + LR+ + P H+S Y L +E T F Y P + LP + + +
Sbjct: 174 NQTLEEALDDLRQAIELSPPHISWYQLTIEPNTMFA--YRPPK--LPDDDALWDIFEQGH 229
Query: 286 SMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYL----GGL-RFSRPR 340
+L+ AGY+ YE S+Y + G++CKHNL YW+ + G G+ L G + RFS+ +
Sbjct: 230 QLLTMAGYQQYETSAYAKAGFQCKHNLNYWRFGDYLAIGCGAHGKLTFPTGEITRFSKTK 289
Query: 341 RMKEFV--DYVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCS 397
K ++ +Y+ + ++ D + M FR V + F + G S
Sbjct: 290 HPKGYLRGEYL----------YEEKNVPKIDRPFEFFMNRFRLLEAVPKQEFEDYTGLS 338
>sp|Q8K928|Y532_BUCAP Oxygen-independent coproporphyrinogen-III oxidase-like protein
BUsg_532 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_532 PE=3 SV=1
Length = 376
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 167/350 (47%), Gaps = 31/350 (8%)
Query: 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGH 109
+L P S YIH+P+C K+C YCDF + N YI L +++
Sbjct: 3 KLPPISLYIHIPWCIKKCGYCDFY--------SYVNKSFIPEKEYIDHLLKDLEKDLSLI 54
Query: 110 KTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169
K + ++F GGGTPSL+ + ++ + + +S AEI++E +P T + ++
Sbjct: 55 KERE-INSIFIGGGTPSLLKSSSIKKMMREIKKRINISNTAEITIEANPTTLEYKRFFNY 113
Query: 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP 229
G+NR S+GVQ F +LLK R + +E A+E +K +N++LD++ LP+Q+
Sbjct: 114 KKSGINRFSIGVQTFNSDLLKKIERTYNKREAILAVEEIKKIN-KNFNLDIMYGLPNQSL 172
Query: 230 QMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289
+ L+ V P H+S Y L +E T F + + LP E L
Sbjct: 173 KDVLLDLQYAVKYNPTHISWYQLTLEPNTPFYV----KKLNLPNENNIFKMLVEGEKFLK 228
Query: 290 SAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGL---GSASYLGG--LRFSRPRRMKE 344
+GY+ YEISSY + YEC+HNL YW + G G G + + G +R + + + +
Sbjct: 229 QSGYKKYEISSYAKLNYECQHNLNYWNFGDYIGIGCSAHGKITQINGDIIRTIKNKNIND 288
Query: 345 FVD--YVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGE 392
F++ Y+++ N + KD + M FR + V + F E
Sbjct: 289 FMNGKYLKH----------KNFVLKKDKPFEYFMNIFRLYKPVLKRQFEE 328
>sp|P71756|HEMN_MYCTU Probable oxygen-independent coproporphyrinogen-III oxidase
OS=Mycobacterium tuberculosis GN=hemN PE=3 SV=1
Length = 375
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 156/339 (46%), Gaps = 10/339 (2%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P Y+H+PFC RC YCDF +P Q P E+ A K +
Sbjct: 5 PFGVYLHVPFCLTRCGYCDFNTY----TPAQLGGVSPDRWLLALRAELELAAAK---LDA 57
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
P + TV+ GGGTPSL+ ++++LD + D F L+ DAE+S E +P + +
Sbjct: 58 PTVHTVYVGGGTPSLLGGERLATLLDMVRDHFVLAPDAEVSTEANPESTWPEFFATIRAA 117
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G RVSLG+Q+ +L + R H A G + +LDLI P ++
Sbjct: 118 GYTRVSLGMQSVAPRVLATLDRVHSPGRAAAAATEAIAEGFTHVNLDLIYGTPGESDDDL 177
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
S+ V A HVS Y L VE GT GE P + A+ Y + + LS+AG
Sbjct: 178 VRSVDAAVQAGVDHVSAYALVVEHGTALARRVRRGELAAPDDDVLAHRYELVDARLSAAG 237
Query: 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNL 352
+ YE+S++ G EC+HNL YW ++G G G+ Y+G +R +K Y + L
Sbjct: 238 FAWYEVSNWCRPGGECRHNLGYWDGGQWWGAGPGAHGYIG---VTRWWNVKHPNTYAEIL 294
Query: 353 EAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFG 391
+ G + A L + ++L R +G+ L G
Sbjct: 295 AGATLPVAGFEQLGADALHTEDVLLKVRLRQGLPLARLG 333
>sp|A4IGH2|RSAD1_DANRE Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Danio rerio GN=rsad1 PE=2 SV=1
Length = 444
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 179/354 (50%), Gaps = 19/354 (5%)
Query: 39 VRQNASTKITPQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLL 98
+R AS KI S Y+H P+C KRC YC+F + +++ ++ +Q
Sbjct: 29 LRSIASDKIPSHAVEASLYVHWPYCLKRCSYCNF------NKYISRSENHDTMTECLQKE 82
Query: 99 CREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP 158
++ + + +VFFGGGTPSL P ++++L+T+T LS AE+++E++P
Sbjct: 83 TETLLKLSQVSRIT----SVFFGGGTPSLAQPSTIAAVLETVTKNSNLSDLAEVTLEVNP 138
Query: 159 GTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAI-EIVKLCGVENWS 217
++++ GVNR S+GVQ+ + L+ GR H ++ + + E KLC S
Sbjct: 139 TPAGKARLKDFTLAGVNRFSIGVQSLNADHLRILGRDHSVQHALQTVSEARKLCP-GRVS 197
Query: 218 LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQS 277
+D++ +LP Q+ W++ L + H+S+Y L +E+GT+ G+ +P + +
Sbjct: 198 VDIMFALPGQSVSCWQKQLEELLYVCDDHISLYQLTLERGTQLFKQVESGKLSVPGDEVT 257
Query: 278 ANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYL-----G 332
A Y+ A +L +G+ YE+S++ + +HN+ YW+ + G G G+ G
Sbjct: 258 AIMYKTACRVLEESGFHQYEVSNFARNNAVSEHNMGYWRGHQYIGVGPGAHGRFVPHGDG 317
Query: 333 GL-RFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGV 385
G+ R +R + ++ V +++ +++ + L +VL++ R G+
Sbjct: 318 GVQREARTQTLEPDV-WIKEVQSRGRGTRRRITLHHLQLLEEVLVMGLRMNEGI 370
>sp|P57615|Y550_BUCAI Oxygen-independent coproporphyrinogen-III oxidase-like protein
BU550 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU550 PE=3 SV=1
Length = 376
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 165/347 (47%), Gaps = 25/347 (7%)
Query: 51 LSPTSAYIHLPFCRKRCHYCDF-PIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGH 109
L P S YIH+P+C K+C YCDF V+ P + YI+ L R+
Sbjct: 4 LPPISLYIHIPWCLKKCGYCDFYSYVSKEIIPE---------NKYIEHLLRDF-ERDLSL 53
Query: 110 KTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169
+ + T+F GGGTPSL+ + ++L+ + + +S + EIS+E +P T + + +
Sbjct: 54 INNRNINTIFIGGGTPSLLKNTSIKNLLNGIKKRKIISKNIEISIEANPKTLEYQNFIQY 113
Query: 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEA-IEIVKLCGVENWSLDLISSLPHQT 228
+ G+NR SLG+Q F ++LK R + K+ A IE K+ +N +LDL+ LP Q+
Sbjct: 114 KNSGINRFSLGIQTFNSKMLKKIERTYNSKDAMNAIIESKKIS--DNINLDLMYGLPGQS 171
Query: 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288
+ L+ + P H+S Y L +E T ++ + P + N +L
Sbjct: 172 LEEALSDLQIAIQCNPSHISWYQLTIEPNT----VFYAKKIQTPHQDVVFNMLIEGDKLL 227
Query: 289 SSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDY 348
AGY+ YEISSY + Y+C+HNL YW + G G GS + R +K
Sbjct: 228 KKAGYKKYEISSYSKFNYQCQHNLNYWNFGDYIGIGCGSHGKITQKNGEIIRTIKN---- 283
Query: 349 VQNLEAGLVDCWGNN--HIDAKDLAMDVLMLSFRTARGVDLKSFGET 393
+N+ L + N+ + +D + M FR + + K F E
Sbjct: 284 -KNINDFLSGKYINSVYQVSKRDKIFEYFMNVFRLYKPIFKKHFREN 329
>sp|Q5SUV1|RSAD1_MOUSE Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Mus musculus GN=Rsad1 PE=2 SV=1
Length = 442
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 144/282 (51%), Gaps = 12/282 (4%)
Query: 48 TPQLSPTSA--YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIAT 105
+P+ + T A Y+H P+C KRC YC+F + ++ V N + R ++
Sbjct: 32 SPESASTRAALYVHWPYCEKRCSYCNF------NKYIPRGVEEGTVRNCLVTEARTLLRL 85
Query: 106 KPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK 165
+ +E+VFFGGGTPSL P V+++L+ + + L D+E+++E +P + +
Sbjct: 86 SGVQR----VESVFFGGGTPSLASPHTVAAVLEAVAQEVYLPADSEVTLEANPTSAPGPR 141
Query: 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP 225
+ GVNR+S+G+Q+ D L+ GR H + + +L S+DL+ LP
Sbjct: 142 LAAFGAAGVNRLSIGLQSLDDAELQLLGRTHSASDALRTLAEARLLFPGRVSVDLMLGLP 201
Query: 226 HQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285
Q + W + L++ + H+S+Y L +E+GT G P P +A Y+
Sbjct: 202 AQKVEPWLQQLQKLLYHCDDHLSLYQLTLERGTSLFAQVQQGTLPAPDPDLAAEMYQEGR 261
Query: 286 SMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
++L AG+R YE+S++ +G HN TYW+ + G G G+
Sbjct: 262 TVLRDAGFRQYEVSNFARNGALSTHNWTYWQCGQYLGIGPGA 303
>sp|A5D7B1|RSAD1_BOVIN Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Bos taurus GN=RSAD1 PE=2 SV=1
Length = 442
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 15/307 (4%)
Query: 24 RSYLISSSTSEATQPVRQNASTKI-TPQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPT 82
R ++ ++ ++ +P + P + Y+H P+C KRC YC+F
Sbjct: 9 RGWVKAAKMAQRRRPADDTGGPQSPAPGSQRAALYVHWPYCEKRCSYCNF---------- 58
Query: 83 QTNDDDPRVSNYIQLLCREIIATKPGHKTSP--PLETVFFGGGTPSLVPPRFVSSILDTL 140
N PR + L +I + + S +E+VFFGGGTPSL P V+++L+ +
Sbjct: 59 --NKYIPRGVDEAALRRCLVIEAQTLLRLSGVRRVESVFFGGGTPSLASPHTVAAVLEAV 116
Query: 141 TDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKE 200
L D+E+++E +P + ++ GVNR+S+G+Q+ D L+ GR H ++
Sbjct: 117 AQAAHLPADSEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQSLDDTELQLLGRTHSARD 176
Query: 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKF 260
+ + + S+DL+ LP Q W L+ + HVS+Y L +E+GT
Sbjct: 177 ALQTLAEAQRLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCCDDHVSLYQLSLERGTTL 236
Query: 261 GILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPF 320
G P P +A Y+ ++L AG+R YE+S++ +G HN TYW+ +
Sbjct: 237 FTQVQQGALPAPDPELAAEMYQEGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQY 296
Query: 321 YGFGLGS 327
G G G+
Sbjct: 297 LGVGPGA 303
>sp|Q9HA92|RSAD1_HUMAN Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Homo sapiens GN=RSAD1 PE=2 SV=2
Length = 442
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 138/291 (47%), Gaps = 16/291 (5%)
Query: 41 QNASTKITPQLSPTSA--YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLL 98
+NA +P+ + A Y+H P+C KRC YC+F N PR +
Sbjct: 25 ENAGGSPSPEPAGRRAALYVHWPYCEKRCSYCNF------------NKYIPRRLEEAAMQ 72
Query: 99 CREIIATKPGHKTS--PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM 156
+ + + S +E+VFFGGGTPSL P V+++L+ + L D E+++E
Sbjct: 73 KCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQAAHLPADLEVTLEA 132
Query: 157 DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENW 216
+P + ++ E GVNR+S+G+Q+ D L+ GR H + + +
Sbjct: 133 NPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRTLAEARRLFPGRV 192
Query: 217 SLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQ 276
S+DL+ LP Q W L+ + H+S+Y L +E+GT G P P
Sbjct: 193 SVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRGALPAPDPEL 252
Query: 277 SANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGS 327
+A Y+ ++L AG+ YE+S++ +G HN TYW+ + G G G+
Sbjct: 253 AAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLGVGPGA 303
>sp|Q54VE8|RSAD1_DICDI Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Dictyostelium discoideum GN=rsad1 PE=3
SV=1
Length = 446
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 177/373 (47%), Gaps = 39/373 (10%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREII--ATKPGHK 110
P S +++ P+C K C YC+F S +S ++ + I + +
Sbjct: 24 PISLFVYWPYCSKICPYCNFNKYR-DSDKVDHERMSKSLSRELESFVKNIYLNSNENSFI 82
Query: 111 TSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSL---DAEISMEMDPGTFDARKME 167
P+ +++FGGGTPSL ++T+ F SL D EI++E++P D + +
Sbjct: 83 RERPITSIYFGGGTPSLAKISTFVETIETMKKLFPSSLSIEDIEITLEVNPDQKDLKNL- 141
Query: 168 ELMD----LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI-S 222
L D +GVNRVSLGVQ+ D+ L GR H + E+I+I + ++ + DLI S
Sbjct: 142 -LKDFKKYVGVNRVSLGVQSLVDKDLHFLGRTHNRIQAEESIKIARDL-FDHVTFDLIYS 199
Query: 223 SLPHQTPQMWEESLRRTVGAQP--KHVSVYDLQVEQGTKF-GILYTPG-EFPL--PTETQ 276
QT + W LR + HVS+Y L EQGT F L + G +F + P + +
Sbjct: 200 RTIDQTLEQWRNELRYALNLADGNGHVSLYTLTFEQGTSFYRRLSSKGNKFKIIPPDDQK 259
Query: 277 SANFYRMASSMLSSAGYRHYEISSYGED-GYECKHNLTYWKNKPFYGFGLGSASYLGGL- 334
S++ Y + + G++ YEISS+ + KHNL YW++ F G G G++S L L
Sbjct: 260 SSDLYDLTVCEAEAMGFQQYEISSFASSHNQKGKHNLNYWRSGDFIGIGPGASSRLTTLN 319
Query: 335 ----------RFS-----RPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKD--LAMDVLML 377
R+S P+ E ++ + L ++ N I + +A ++L+
Sbjct: 320 NNNNNNNQISRYSFKNILHPKEWMEKLNSKEILCNAFIEDEFNPTIPLTNFEVAEEMLLN 379
Query: 378 SFRTARGVDLKSF 390
RT GV L +F
Sbjct: 380 GLRTIEGVQLSTF 392
>sp|O67886|HEMN_AQUAE Oxygen-independent coproporphyrinogen-III oxidase OS=Aquifex
aeolicus (strain VF5) GN=hemN PE=3 SV=1
Length = 456
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 171/383 (44%), Gaps = 28/383 (7%)
Query: 32 TSEATQPVRQNASTK----ITPQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDD 87
+E T+ V+++ K + +P S Y H+PFC +RC YC ++ + +
Sbjct: 26 ATEFTEEVKEDEYVKRLIKSNERKTPLSLYFHIPFCEQRCLYCGCNVII----SHRKGIE 81
Query: 88 DPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLS 147
+P Y++ +CRE+ + + +GGGTP+ + P + ++ + +F
Sbjct: 82 EP----YLERVCREMDLVSQYLDKDRKVIQLHWGGGTPNYLSPEQIKWFMEEIRKRFEFG 137
Query: 148 LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207
+AEIS+E+DP +++ + D G NR+SLGVQ ++ ++ R + + E +E
Sbjct: 138 DNAEISIELDPRYLTDEQIKAIKDAGFNRISLGVQDLDPKVQQAVNRVQPYELIKEKMEK 197
Query: 208 VKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPG 267
++ G E+ +LDLI LP+QT + +E+++ + + P ++ Y K P
Sbjct: 198 LREAGFESINLDLIYGLPYQTKESFEKTVEKVIELNPDRIATYSFAYIPQVKPHQQLLPK 257
Query: 268 EFPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYE---CKHNLTYWKNKPFYGF- 323
E LP+ + + M + AGY + + + + E + W+N F G+
Sbjct: 258 E-ALPSAEEKLRIFEMVINKFQEAGYVYIGMDHFAKPEDELAVAQRKGELWRN--FQGYT 314
Query: 324 --------GLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLAMDVL 375
G G+ S +G L S + K DY + ++ G + + ++ D +
Sbjct: 315 TKKGVELLGFGATS-IGMLYDSYFQNWKTLRDYNKTVDEGKIPVFRGYVLNEDDFIRREV 373
Query: 376 MLSFRTARGVDLKSFGETFGCSL 398
++ GV+ FG +
Sbjct: 374 IMDIMCNLGVEFSKIENMFGINF 396
>sp|Q51676|HEMN_PARDP Oxygen-independent coproporphyrinogen-III oxidase OS=Paracoccus
denitrificans (strain Pd 1222) GN=hemN PE=3 SV=1
Length = 451
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 132/302 (43%), Gaps = 14/302 (4%)
Query: 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPP 114
S Y+H+PFCR+ C +C + TQ D V Y + L E+ K
Sbjct: 52 SLYMHVPFCRRLCWFC--------ACRTQGTQSDEPVRAYAKALLAELDMLKSALAPGVR 103
Query: 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174
L + +GGGTP+L+P + + + D F L+ AE S+E+DP D +M+ L + G+
Sbjct: 104 LSRLHWGGGTPTLMPAEMMRLVAGAVLDAFPLAEGAEFSVEIDPNEIDEARMDALAEAGL 163
Query: 175 NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234
NR S+GVQ F E+ K GR + A+++++ G+ + + D++ LPHQ P E
Sbjct: 164 NRASIGVQDFDPEIQKIIGREQSFEVTKRAVDMIRDRGIASLNADILYGLPHQDPHRIAE 223
Query: 235 SLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294
S+++ + P V++Y + P E LP + A + + GY
Sbjct: 224 SVQKLLALSPDRVALYGYAHVPWMAKRQVMIPSE-ALPDPHGRLRLFETARELFLADGYD 282
Query: 295 HYEISSYGE--DGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNL 352
I + DG + F G+ A L GL S R + Y QN
Sbjct: 283 EIGIDHFARPGDGLARAQKAGLLRRN-FQGYTDDRAEVLVGLGASSISRFPQ--GYAQNA 339
Query: 353 EA 354
A
Sbjct: 340 PA 341
>sp|P74132|HEMN_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=hemN PE=3 SV=1
Length = 466
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 23/309 (7%)
Query: 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKT 111
+P S Y H+PFC K C++C T P V Y++ + ++I P
Sbjct: 55 TPLSLYCHIPFCAKACYFC--------GCNTIITQHKPAVDPYLKAVAKQIALVAPLVDQ 106
Query: 112 SPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMD 171
P++ + +GGGTP+ + + +T+TD F L+ +AEIS+E++P D + L
Sbjct: 107 QRPVQQLHWGGGTPNYLTLEQAEFLFNTITDAFPLAENAEISIEINPCYVDKDYIFALRQ 166
Query: 172 LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM 231
LG NR+S G+Q F ++ ++ R +++ ++ ++ ++ ++DLI LPHQ
Sbjct: 167 LGFNRISFGIQDFNSQVQQAVNRIQPEAMLFQVMDWIRQANFDSVNVDLIYGLPHQNLAT 226
Query: 232 WEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291
+ E+LR+T P ++V++ K P E LP + + + L+
Sbjct: 227 FRETLRKTAQLNPDRIAVFNFAYVPWLKPVQKKMP-ESALPPAEEKLKIMQATIADLTEQ 285
Query: 292 GY-----RHY-----EISSYGEDGYECKHNLTYWKNKP---FYGFGLGSASYLGGLRFSR 338
GY H+ E++ G E N + +P GFG+ S S L +
Sbjct: 286 GYVFIGMDHFAKPDDELAIAQRRG-ELHRNFQGYTTQPESDLLGFGITSISMLQDVYAQN 344
Query: 339 PRRMKEFVD 347
+ +K F +
Sbjct: 345 HKTLKAFYN 353
>sp|P77915|HEMN_PSEAE Oxygen-independent coproporphyrinogen-III oxidase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=hemN PE=3 SV=2
Length = 460
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 154/363 (42%), Gaps = 37/363 (10%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y+H+PFC C+YC + D R + Y+ L REI
Sbjct: 53 PLSLYVHIPFCANICYYC--------ACNKVITKDRGRSAPYLARLVREIEIVSRHLSRE 104
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLD--AEISMEMDPGTFDARKMEELM 170
+E + FGGGTP+ + P + ++ L L D + +E+DP D M L
Sbjct: 105 QVVEQLHFGGGTPTFLSPGQLRELMSQLRTHLNLLDDDSGDYGIEIDPREADWSTMGLLR 164
Query: 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ 230
+LG NRVSLGVQ F E+ K+ R +E +E + + +LDLI LP QTP
Sbjct: 165 ELGFNRVSLGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYRSINLDLIYGLPKQTPD 224
Query: 231 MWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290
+ ++ + QP +SV++ +F LP+ Q + + L++
Sbjct: 225 SFARTVDEVIALQPDRLSVFNY-AHLPERFMPQRRINADDLPSPGQKLEMLQRTTEQLAA 283
Query: 291 AGYRHY----------EISSYGEDGYECKHNLTYWKNK--PFYGFGLGSASYLGGLRFSR 338
AGYR+ E++S EDG ++ Y + G G+ + S +G L
Sbjct: 284 AGYRYIGMDHFALPDDELASAQEDGTLQRNFQGYTTHGHCDLVGLGVSAISQIGDL---Y 340
Query: 339 PRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLAMDVLM--------LSF---RTARGVDL 387
+ + DY +L+ G + H ++ D ++ L+F T G+D
Sbjct: 341 SQNSSDINDYQTSLDNGQLAIRRGLHCNSDDRVRRAVIQQLICHFELAFEDIETEFGIDF 400
Query: 388 KSF 390
+S+
Sbjct: 401 RSY 403
>sp|O34162|HEMN_CUPNH Oxygen-independent coproporphyrinogen-III oxidase OS=Cupriavidus
necator (strain ATCC 17699 / H16 / DSM 428 / Stanier
337) GN=hemN PE=3 SV=2
Length = 494
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Query: 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCRE--IIATKPGH 109
+P S Y+H+PFC C+YC G + T D R + Y+ L RE ++A + G
Sbjct: 64 APLSLYLHIPFCENICYYC-------GCNKIITRDHG-RSARYVNYLGREMALVADRLGP 115
Query: 110 KTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169
+ + +GGGTP+ + P + ++ L + F L+ + E S+E+DP D +M L
Sbjct: 116 RRQ--VLQSHWGGGTPTFLDPGEMRRVMALLHEHFELAAEGEHSIEIDPRRVDHARMALL 173
Query: 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP 229
+LG NRVSLGVQ F E+ ++ R +E ++ + G + SLDLI LPHQT
Sbjct: 174 AELGFNRVSLGVQDFDPEVQQAIHRIQPFEETRAVVDAARTLGFRSVSLDLIYGLPHQTA 233
Query: 230 QMWEESLRRTVGAQPKHVSVY 250
+ ++ + + +P +SVY
Sbjct: 234 ARFGRTIDQVLALRPDRLSVY 254
>sp|Q9ZLH0|HEMN_HELPJ Oxygen-independent coproporphyrinogen-III oxidase OS=Helicobacter
pylori (strain J99) GN=hemN PE=3 SV=1
Length = 457
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y HLPFCR C++C S T+ ++ +V YI L +E+ K T+
Sbjct: 52 PLSLYTHLPFCRSACYFC-------ACSVIYTSLEEKKV-RYISYLKKELALLKNAMDTN 103
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKF-GLSLDAEISMEMDPGTFDARKMEELMD 171
+ +GGGTP+ P + I ++ + F S D E+S E+DP F M+ L D
Sbjct: 104 REVAQFHYGGGTPTFFSPPQLDEITQSIQEVFPNFSQDIEMSCEIDPRHFTKEHMQTLFD 163
Query: 172 LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM 231
G NR+S GVQ F E+ K+ R + V E++++ + G+++ + DLI LP+QT +
Sbjct: 164 RGFNRLSFGVQDFDLEVQKAIHRIQPFEMVQESVKLARDYGIKSINFDLIYGLPNQTKEG 223
Query: 232 WEESLRRTVGAQPKHVSVYD 251
+ ++L + P ++V++
Sbjct: 224 FLKTLEWVLKLDPDRLAVFN 243
>sp|O25376|HEMN_HELPY Oxygen-independent coproporphyrinogen-III oxidase OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=hemN PE=3 SV=1
Length = 457
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y HLPFCR C++C S T+ ++ ++ YI L +E+ K T+
Sbjct: 52 PLSLYTHLPFCRSACYFC-------ACSVIYTSLEEKKI-RYISYLKKELALLKNAMDTN 103
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKF-GLSLDAEISMEMDPGTFDARKMEELMD 171
+ +GGGTP+ P + I ++ + F S D E+S E+DP F M+ L D
Sbjct: 104 REVAQFHYGGGTPTFFSPIQLDEITQSIQEVFPNFSKDIEMSCEIDPRHFTKEHMQTLFD 163
Query: 172 LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM 231
G NR+S GVQ F E+ K+ R + V E++++ + G+++ + DLI LP+QT +
Sbjct: 164 RGFNRLSFGVQDFDFEVQKAIHRIQPFEMVQESVKLARDYGIKSINFDLIYGLPNQTKEG 223
Query: 232 WEESLRRTVGAQPKHVSVYD 251
+ ++L + P ++V++
Sbjct: 224 FLKTLEWVLKLDPDRLAVFN 243
>sp|O31381|HEMN_BRAJA Oxygen-independent coproporphyrinogen-III oxidase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=hemN PE=3 SV=2
Length = 450
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 12/204 (5%)
Query: 49 PQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREI--IATK 106
P + S Y+H+PFCR+ C YC TQ D ++ Y + L EI +A
Sbjct: 43 PAGASASLYLHVPFCREMCWYC--------GCHTQIVRRDDLIAAYQRTLRSEIALVAET 94
Query: 107 PGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKM 166
G + +E + FGGGTP+++ P + ++ + F + AEI++E+DP T A +
Sbjct: 95 IGRRIK--VEHIHFGGGTPTIMAPEAFAELMAAMRQAFFVLPSAEIAVEIDPRTLTADMV 152
Query: 167 EELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226
E + GVNR SLGVQ+F + ++ R ++ +++++ G+ + DLI LPH
Sbjct: 153 EAMRLSGVNRASLGVQSFDPIVQRAINRIQSFEQTAAVVDMLRHAGIAGINFDLIYGLPH 212
Query: 227 QTPQMWEESLRRTVGAQPKHVSVY 250
QT +++RR++ P SV+
Sbjct: 213 QTVASCLDTVRRSLLLAPDRFSVF 236
>sp|P32131|HEMN_ECOLI Oxygen-independent coproporphyrinogen-III oxidase OS=Escherichia
coli (strain K12) GN=hemN PE=1 SV=4
Length = 457
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 28/312 (8%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKP---GH 109
P S Y+H+PFC K C++C G + T + Y+ L +EI+ P G
Sbjct: 52 PLSLYVHIPFCHKLCYFC-------GCNKIVTRQQH-KADQYLDALEQEIVHRAPLFAGR 103
Query: 110 KTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169
S + +GGGTP+ + +S ++ L + F + DAEIS+E+DP + ++ L
Sbjct: 104 HVS----QLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHL 159
Query: 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP 229
G NR+S+GVQ F E+ + R + ++ + + G + ++DLI LP QTP
Sbjct: 160 RAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTP 219
Query: 230 QMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289
+ + +L+R P +SV++ T F + LP+ Q + + + L+
Sbjct: 220 ESFAFTLKRVAELNPDRLSVFNY-AHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278
Query: 290 SAGYR-----HY-----EISSYGEDG--YECKHNLTYWKNKPFYGFGLGSASYLGGLRFS 337
+GY+ H+ E++ +G + T + G G+ + S +G
Sbjct: 279 QSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQ 338
Query: 338 RPRRMKEFVDYV 349
+ +K++ V
Sbjct: 339 NQKELKQYYQQV 350
>sp|Q89A47|Y498_BUCBP Uncharacterized protein bbp_498 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_498 PE=3 SV=1
Length = 374
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 151/345 (43%), Gaps = 34/345 (9%)
Query: 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLE 116
YI++P+ KR Y DF ++ + + +Q L ++ + + +
Sbjct: 7 YINIPWPTKRYKYHDFKFPEYKKKI----NEKKYIHHLLQDLKKDSLLV-----PNRTIN 57
Query: 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNR 176
T+F GG P+ + +L + + +S +AE ++E +K+ G+NR
Sbjct: 58 TIFIGGIAPNFFKLTSIKYLLKKIKNIIPISKNAENTIEFHISKLSEKKIFYYKKFGINR 117
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236
S+ +Q F + S + H K + I+ + + +N +LDLI LP Q+ Q L
Sbjct: 118 FSIRIQTFDQKKFNSLSKVHISKNILHKIKKINIEKFKNINLDLIYGLPKQSLQEALLDL 177
Query: 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSAN----FYRMASSMLSSAG 292
+ + +P H+S + +E+ + +++ + N + +L +G
Sbjct: 178 KTAISLKPNHISWCEFYIEKNN--------NNYKNLSKSCNLNIIWKIFLQGEKLLKKSG 229
Query: 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGL---GSASYLGG--LRFSRPRRMKEFVD 347
Y+ YEISSY + Y+C HNL YWK + G G G + G ++ + + +K+F++
Sbjct: 230 YKKYEISSYSKTNYQCLHNLNYWKFGDYLGIGCNAHGKITQKNGKIIKTIKNKNLKKFMN 289
Query: 348 YVQNLEAGLVDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGE 392
G + N+ I K+L+++ M R + K F +
Sbjct: 290 -------GKY-TYKNHIISKKNLSLEFFMNRLRLNTPIYRKDFKK 326
>sp|P0A1E1|HEMN_SALTY Oxygen-independent coproporphyrinogen-III oxidase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=hemN PE=3 SV=1
Length = 457
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y+H+PFC K C++C G + T + Y+ L +EI P
Sbjct: 52 PLSLYVHIPFCHKLCYFC-------GCNKIVTRQQH-KADQYLDALEQEIRHRAPLF-AD 102
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ + +GGGTP+ + +S ++ L + F + DAEIS+E+DP + ++ L
Sbjct: 103 RHVSQLHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLRAE 162
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G NR+S+GVQ F E+ + R + ++ + + G + ++DLI LP QTP+ +
Sbjct: 163 GFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDIGFTSTNIDLIYGLPKQTPESF 222
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
+L+R P +SV++ T F + LP+ Q + + L+ AG
Sbjct: 223 AFTLKRVTELNPDRLSVFNY-AHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQAG 281
Query: 293 YR 294
Y+
Sbjct: 282 YQ 283
>sp|P0A1E2|HEMN_SALTI Oxygen-independent coproporphyrinogen-III oxidase OS=Salmonella
typhi GN=hemN PE=3 SV=1
Length = 457
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y+H+PFC K C++C G + T + Y+ L +EI P
Sbjct: 52 PLSLYVHIPFCHKLCYFC-------GCNKIVTRQQH-KADQYLDALEQEIRHRAPLF-AD 102
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ + +GGGTP+ + +S ++ L + F + DAEIS+E+DP + ++ L
Sbjct: 103 RHVSQLHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLRAE 162
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G NR+S+GVQ F E+ + R + ++ + + G + ++DLI LP QTP+ +
Sbjct: 163 GFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDIGFTSTNIDLIYGLPKQTPESF 222
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292
+L+R P +SV++ T F + LP+ Q + + L+ AG
Sbjct: 223 AFTLKRVTELNPDRLSVFNY-AHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQAG 281
Query: 293 YR 294
Y+
Sbjct: 282 YQ 283
>sp|P51008|HEMZ_RHOS4 Coproporphyrinogen-III oxidase, anaerobic 2 OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=hemZ PE=3 SV=1
Length = 450
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 14/305 (4%)
Query: 49 PQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPG 108
P S Y+H+PFCR+ C +C + TQ D V Y L E+ +
Sbjct: 46 PAGGSISLYLHVPFCRRLCWFC--------ACRTQGTSSDAPVRAYAAALKSELALLRAR 97
Query: 109 HKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEE 168
L + +GGGTP+L+PP + + + D + + S+E+DP DA +++
Sbjct: 98 LAPGVRLARMHWGGGTPTLLPPTLIHELALAIRDAVPSDAETDFSVEIDPTEIDAARLDA 157
Query: 169 LMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228
L + G+ RVS+GVQ F + +S GR + E ++ G+ D++ LPHQT
Sbjct: 158 LFEAGMTRVSIGVQDFDPLIQQSIGREQSFELTQRLTEDLRHRGLMGLDADILYGLPHQT 217
Query: 229 PQMWEESLRRTVGAQPKHVSVYD-LQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSM 287
+S+++ + P V+V V ++ ++ P P E + + A ++
Sbjct: 218 APGVADSVQKLLSLSPDRVAVLGYAHVPAVSRRQLMIPTASIPGPEE--RLDLFETARTL 275
Query: 288 LSSAGYRHYEISSYGEDGYECKHNLTYWK-NKPFYGFGLGSASYLGGLRFSRPRRMKEFV 346
+ GY+ + + G H + + F G+ A L GL S R +
Sbjct: 276 ILWDGYQQVGLDHFARAGDPLAHAHACGRLCRSFQGYTDDRAEVLIGLGASAISRFPQ-- 333
Query: 347 DYVQN 351
+ QN
Sbjct: 334 GFTQN 338
>sp|P95651|HEMN_RHOS5 Oxygen-independent coproporphyrinogen-III oxidase OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=hemN PE=3
SV=2
Length = 452
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 44/365 (12%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S YIH+PFC + C +C + TQ V Y+ L +E+ K
Sbjct: 50 PISVYIHVPFCERLCWFC--------ACRTQGTQTLAPVEAYVGTLLQELELVKKHLPAG 101
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ +GGGTP+++ P + + + + D E S+E+DP D K+ L +
Sbjct: 102 VKAGRLHWGGGTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEE 161
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G+NR S+G+Q F D + + GR + +E ++ GV + + DL+ LPHQ +
Sbjct: 162 GMNRASIGIQDFTDIVQSAIGREQPFENTRACVETLRRYGVHSLNTDLVYGLPHQNRESL 221
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTP---------GEFPLPTETQSANFYRM 283
++ + + P V++ FG + P E LP + + +
Sbjct: 222 AATIDKVLQLGPDRVAI----------FGYAHVPWMAKRQKLIDENVLPNDMERHELANL 271
Query: 284 ASSMLSSAGYRHYEISSYGE-DGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRM 342
A+ M + G+ I + D + + F G+ + L G+ S +
Sbjct: 272 AAKMFTEGGFERIGIDHFARPDDSMAVAARSGKLRRNFQGYTDDTCPTLLGIGASSISKF 331
Query: 343 KE--------FVDYVQNLEAGLVDCWGNNHIDAKDL----AMDVLMLSFRTARGVDLKSF 390
++ Y++ +E G + + + + +D A++++M FR +DL +
Sbjct: 332 EQGYLQNTAATAAYIKAIEEGRLPGYRGHRMTDEDYLHGRAIEMIMCEFR----LDLPAL 387
Query: 391 GETFG 395
FG
Sbjct: 388 RARFG 392
>sp|P33770|HEMF_RHOS4 Coproporphyrinogen-III oxidase, anaerobic 1 OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=hemN PE=3 SV=3
Length = 452
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 27/259 (10%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y+H+PFC + C +C + TQ V Y+ L +E+ K
Sbjct: 50 PISVYVHVPFCERLCWFC--------ACRTQGTQTLAPVEAYVGTLLQELELVKQHLPAG 101
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL 172
+ +GGGTP+++ P + + + + D E S+E+DP D K+ L +
Sbjct: 102 VKAGRLHWGGGTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEE 161
Query: 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232
G+NR S+G+Q F D + + GR + +E ++ GV + + DL+ LPHQ +
Sbjct: 162 GMNRASIGIQDFTDIVQNAIGREQPFENTKACVETLRRYGVHSLNTDLVYGLPHQNRESL 221
Query: 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTP---------GEFPLPTETQSANFYRM 283
++ + + +P V++ FG + P E LP + + +
Sbjct: 222 AATIDKVLSLRPDRVAI----------FGYAHVPWMAKRQKLIDETVLPPDIERHELANL 271
Query: 284 ASSMLSSAGYRHYEISSYG 302
A+ + + G+ I +
Sbjct: 272 AARLFTEGGFERIGIDHFA 290
>sp|P55477|Y4HJ_RHISN Uncharacterized protein y4hJ OS=Rhizobium sp. (strain NGR234)
GN=NGR_a03400 PE=4 SV=1
Length = 260
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 88 DPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLS 147
DPR+S+ + A P + P+ V FGGGTP+++ P +++D L F
Sbjct: 40 DPRLSDGASEEISLVAAQAP---QALPVSDVHFGGGTPTIIKPEDFLALMDLLRRSFAFR 96
Query: 148 LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207
A I++E++P TF A E L V+ VSLGVQ+F + K+ R + AIE
Sbjct: 97 KTATIAVEIEPRTFTAEMAEALGAAEVSHVSLGVQSFDPIVQKATNRVQRKAQTTAAIEN 156
Query: 208 VKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250
++ G+ + DL+ LPHQT Q +S V +P ++V+
Sbjct: 157 LRRIGISRINFDLMYGLPHQTVQSCVQSATAAVAMRPDRLAVF 199
>sp|Q796V8|HEMZ_BACSU Oxygen-independent coproporphyrinogen-III oxidase 2 OS=Bacillus
subtilis (strain 168) GN=hemZ PE=1 SV=1
Length = 501
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 19/249 (7%)
Query: 21 KLLRSYLISSSTSEATQPV--RQNASTKITPQL----SPTSAYIHLPFCRKRCHYCDFPI 74
+L + YLI Q + RQ A+ P L S YI +PFC +C YC FP
Sbjct: 135 ELKKDYLIHDEKIMLMQEIVDRQLAAV---PDLYRVKDEVSIYIGIPFCPTKCAYCTFPA 191
Query: 75 VALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSP-PLETVFFGGGTPSLVPPRFV 133
A+ RV +++ L E+ K + T++FGGGTP+ + +
Sbjct: 192 YAIQGQAG-------RVGSFLWGLHYEMQKIGEWLKEHDVKVTTIYFGGGTPTSITAEEM 244
Query: 134 SSILDTLTDKF-GLSLDAEISMEMD-PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKS 191
+ + + F + EI++E P T K+ L ++R+S+ Q++++E LK+
Sbjct: 245 DLLYEEMVRSFPDVKNIREITVEAGRPDTITEEKLAVLNKYDIDRISINPQSYENETLKA 304
Query: 192 CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251
GR H ++E E + + G+ N ++DLI LP + + + SL T P+ ++V+
Sbjct: 305 IGRHHTVEETIEKYHLSRQHGMNNINMDLIIGLPGEGVKEFRHSLSETEKLMPESLTVHT 364
Query: 252 LQVEQGTKF 260
L ++ ++
Sbjct: 365 LSFKRASEM 373
>sp|O31067|HEMN_THEVL Oxygen-independent coproporphyrinogen-III oxidase (Fragment)
OS=Thermosynechococcus vulcanus GN=hemN PE=3 SV=1
Length = 325
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 34/233 (14%)
Query: 144 FGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYE 203
F ++ DAEIS+E+ P + LG NR+S GVQ F ++ + R ++
Sbjct: 2 FLMTKDAEISIEVSPRYINGDYFLRGRKLGFNRISFGVQDFDPQVQLAVNRVQRETMFFQ 61
Query: 204 AIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263
+E ++ E+ ++DLI LP+QT Q +E ++ +T+ P ++V F
Sbjct: 62 VMEWIRAAEFESVNIDLIYGLPYQTVQSFEATIAKTLRLDPDRIAV----------FNFA 111
Query: 264 YTPGEFP---------LPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYE------- 307
Y P P LP + L+S GYR+ + + + E
Sbjct: 112 YLPNLKPIQKRIDPTTLPDSATKLTILQRVIERLTSQGYRYIGMDHFAKPTDELAIAQRS 171
Query: 308 --CKHNLTYWKNKP---FYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAG 355
K N + P GFGL S S L + + K Y ++ AG
Sbjct: 172 GDLKRNFQGYTTLPTADLIGFGLTSISMLQA---AYAQNQKHLATYFSDVAAG 221
>sp|Q58536|Y1136_METJA Uncharacterized protein MJ1136 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1136 PE=4 SV=1
Length = 541
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 35/280 (12%)
Query: 37 QPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC---------DFPIVALGSSPTQTNDD 87
+PVR + + ++ H +C +C D P G P
Sbjct: 76 KPVRTISGVAVVAVMTSPEKCPH-----GKCIFCPGGVGSVFGDVPQSYTGREPATMRGL 130
Query: 88 DPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL---VPPRFVSSILDTLTDKF 144
Y+Q R K GH T+ +E + GG P+ F+ LD +
Sbjct: 131 MFNFDPYLQTKARIEQLEKVGHPTNK-IELIIMGGTFPARDIEYQDWFIKRCLDAMNGVD 189
Query: 145 GLSLD-------------AEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKS 191
SL+ + +E P +++ +++ LG RV LGVQ +E+L+
Sbjct: 190 ASSLEEAQKINETAEHRCVALCIETRPDYCGEKEINQMLKLGATRVELGVQTIYNEILEF 249
Query: 192 CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA---QPKHVS 248
C R H +++ +A +++K G+ S L+ +P +M ++ + +P V
Sbjct: 250 CKRGHTVEDTIKATQLLKDSGL-KVSYHLMPGMPGSDMEMDKKMFKEIFENPDFKPDMVK 308
Query: 249 VYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288
+Y V +GT+ ++ GE+ E ++ A S++
Sbjct: 309 IYPCLVIEGTELYEMWKRGEYKPYREEEAIEIISYAKSIM 348
>sp|P95506|HEMN_PASHA Oxygen-independent coproporphyrinogen-III oxidase (Fragment)
OS=Pasteurella haemolytica GN=hemN PE=3 SV=1
Length = 146
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS 112
P S Y+H+PFC K C++C G + T +V Y+ L REI P +
Sbjct: 50 PLSLYVHIPFCHKLCYFC-------GCNKVITRHRH-KVEIYLDYLEREIKTRAPLFQNR 101
Query: 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP 158
+ + +G GTP+ + + ++ L F +S DAEIS+EMDP
Sbjct: 102 -LVTQIHWGRGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDP 146
>sp|Q57910|Y486_METJA Uncharacterized protein MJ0486 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0486 PE=4 SV=1
Length = 322
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 118 VFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVN 175
++F GT + P + I D F LS I + + P + K++ L + N
Sbjct: 100 IYFYPGTNTYAPAEKLKEIWD-----FSLSYKEVIGLSIGTRPDCLEKEKLDILAEYVEN 154
Query: 176 ----RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI-----VKLCGVENWSLDLISSLPH 226
+ LGVQ+ + L+ R H + ++ +AI+ +K+CG +I LP
Sbjct: 155 GYDIWIDLGVQSMHQKTLEILNRGHDVSDIIKAIKDCHKRGIKVCG------HVILGLPG 208
Query: 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQ 276
++ + E+ + + + V +Y L V +GTK +Y GE+ E Q
Sbjct: 209 ESWKEMMETAKILSLLEIEAVKIYPLVVVKGTKLEEMYWKGEYRTLDENQ 258
>sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Caenorhabditis briggsae
GN=elpc-3 PE=3 SV=1
Length = 548
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 101/262 (38%), Gaps = 30/262 (11%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+PVR + + +S H+ F C YC DF G PT
Sbjct: 74 AKPVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 133
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR---FVSSILDTLTDK 143
R + Y+Q R + GH +E + GG SL F+ ++ D L+
Sbjct: 134 IRARYNPYLQTRGRLNQLMQLGHSVDK-VEFIVMGGTFMSLPEDYRDFFIRNLHDALSGH 192
Query: 144 FGLSLDAE-------------ISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
S++ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 193 TSASVEEAVAYSERSKMKCIGITIETRPDYCLPRHLNDMLLYGCTRLEIGVQSTYEDVAR 252
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEES---LRRTVGAQPKHV 247
R H +K V E + K G + + ++ LP+ + +E L + +P +
Sbjct: 253 DTNRGHTVKSVCETFHMAKDTGYK-VVIHMMPDLPNVGLERDKEQFLELFESPAFRPDGL 311
Query: 248 SVYDLQVEQGTKFGILYTPGEF 269
+Y V +GT L+ G +
Sbjct: 312 KLYPTLVIRGTGLYELWKTGRY 333
>sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Caenorhabditis elegans
GN=elpc-3 PE=3 SV=2
Length = 547
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 101/262 (38%), Gaps = 30/262 (11%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+PVR + + +S H+ F C YC DF G PT
Sbjct: 74 AKPVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 133
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR---FVSSILDTLTDK 143
R + Y+Q R + GH +E + GG SL F+ ++ D L+
Sbjct: 134 IRARYNPYLQTRGRLNQLMQLGHSVDK-VEFIVMGGTFMSLPEDYRDFFIRNLHDALSGH 192
Query: 144 FGLSLDAE-------------ISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
S++ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 193 TSASVEEAVAYSERSKMKCIGITIETRPDYCLPRHLNDMLLYGCTRLEIGVQSTYEDVAR 252
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEES---LRRTVGAQPKHV 247
R H +K V E + K G + + ++ LP+ + +E L + +P +
Sbjct: 253 DTNRGHTVKSVCETFHMAKDTGYK-VVIHMMPDLPNVGLERDKEQFLELFESPAFRPDGL 311
Query: 248 SVYDLQVEQGTKFGILYTPGEF 269
+Y V +GT L+ G +
Sbjct: 312 KLYPTLVIRGTGLYELWKTGRY 333
>sp|Q2KJ61|ELP3_BOVIN Elongator complex protein 3 OS=Bos taurus GN=ELP3 PE=2 SV=2
Length = 547
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 44/269 (16%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+P+R + + + H+ F C YC DF G PT
Sbjct: 78 AKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 137
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLT-- 141
R Y+Q R + GH +E + GG P F+ ++ D L+
Sbjct: 138 IRARYDPYLQTRHRIEQLKQLGHSVDK-VEFIVMGGTFMALPEEYRDYFIRNLHDALSGH 196
Query: 142 -----------DKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
+ L+ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 197 TSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVAR 256
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV---------- 240
R H +K V E+ + K G + + H P + L R +
Sbjct: 257 DTNRGHTVKAVCESFHLAKDSGFK--------VVAHMMPDLPNVGLERDIEQFTEFFENP 308
Query: 241 GAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
+P + +Y V +GT L+ G +
Sbjct: 309 AFRPDGLKLYPTLVIRGTGLYELWKSGRY 337
>sp|Q5ZHS1|ELP3_CHICK Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1
Length = 546
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 26/202 (12%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+P+R + + + H+ F C YC DF G PT
Sbjct: 77 AKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 136
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLT-- 141
R Y+Q R + GH +E + GG P F+ ++ D L+
Sbjct: 137 IRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTFMALPEDYRDYFIRNLHDALSGH 195
Query: 142 -----------DKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
+ L+ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 196 TSNNVAEAVKYSERSLTKCVGITIETRPDYCLKRHLSDMLSYGCTRLEIGVQSVYEDVAR 255
Query: 191 SCGRAHGLKEVYEAIEIVKLCG 212
R H +K V E+ + K G
Sbjct: 256 DTNRGHTVKAVCESFHLAKDAG 277
>sp|Q8Y0K4|MOAA_RALSO Cyclic pyranopterin monophosphate synthase OS=Ralstonia
solanacearum (strain GMI1000) GN=moaA PE=3 SV=2
Length = 345
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG 122
C RC YC P D D R + +LL E I +E + G
Sbjct: 26 CNFRCIYC---------MPKDVFDKDYRFLQHSELLSFEEIERMVRLFIEHGVEKIRLTG 76
Query: 123 GTPSLVP--PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLG 180
G P L R V +L L + G LD ++ G ARK + L D G+ RV++
Sbjct: 77 GEPLLRKDIERLVE-MLARLNTRDGKPLDLTLTTN---GALLARKAQALKDAGLTRVTVS 132
Query: 181 VQAFQDELLKSCGRAH-GLKEVYEAIEIVKLCGVENWSLDLI 221
+ A D + + EV IE+ + G+ ++++
Sbjct: 133 LDAIDDATFRRMNDVDFAVAEVLHGIEVAQRVGLAPLKINMV 174
>sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1
Length = 549
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 44/269 (16%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+P+R + + + H+ F C YC DF G PT
Sbjct: 80 AKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 139
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLTDK 143
R Y+Q R + GH +E + GG P F+ ++ D L+
Sbjct: 140 IRARYDPYLQTRHRVEQLKQLGHNVDK-VEFIVMGGTFMALPEDYRDFFIRNLHDALSGH 198
Query: 144 FGLSLDAE-------------ISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
S+ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 199 TSNSVSEAVRYSERSNTKCVGITIETRPDYCLKRHLSDMLCYGCTRLEIGVQSVYEDVAR 258
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV---------- 240
R H +K V E+ + K G + S H P + L R +
Sbjct: 259 DTNRGHTVKAVCESFHLSKDAGFKVVS--------HMMPDLPNMGLERDIEQFIEFFENP 310
Query: 241 GAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
+P + +Y V +GT L+ G +
Sbjct: 311 AFRPDGMKLYPTLVIRGTGLYELWKTGRY 339
>sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2
Length = 547
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 95/269 (35%), Gaps = 44/269 (16%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+P+R + + + H+ F C YC DF G PT
Sbjct: 78 AKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 137
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLT-- 141
R ++Q R + GH +E + GG P F+ ++ D L+
Sbjct: 138 IRARYDPFLQTRHRIEQLKQLGHSVDK-VEFIVMGGTFMALPEEYRDYFIRNLHDALSGH 196
Query: 142 -----------DKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
+ L+ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 197 TSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVAR 256
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV---------- 240
R H +K V E+ + K G + + H P + L R +
Sbjct: 257 DTNRGHTVKAVCESFHLAKDSGFK--------VVAHMMPDLPNVGLERDIEQFTEFFENP 308
Query: 241 GAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
+P + +Y V +GT L+ G +
Sbjct: 309 AFRPDGLKLYPTLVIRGTGLYELWKSGRY 337
>sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3
Length = 548
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 44/269 (16%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+P+R + + + H+ F C YC DF G PT
Sbjct: 79 AKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 138
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLTDK 143
R Y+Q R + GH +E + GG P F+ ++ D L+
Sbjct: 139 IRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTFMALPEEYRDYFIRNLHDALSGH 197
Query: 144 FGLSLDAE-------------ISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
++ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 198 TSNNVTEAVRYSERSNTKCVGITIETRPDYCLKRHLSDMLGYGCTRLEIGVQSVYEDVAR 257
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV---------- 240
R H ++ V E+ + K G + H P + + R V
Sbjct: 258 DTNRGHTVRAVCESFHLAKDAG--------FKVVAHMMPDLPNVGMERDVEQFIEFFENP 309
Query: 241 GAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
+P + +Y V +GT L+ G +
Sbjct: 310 AFRPDGLKLYPTLVIRGTGLYELWKTGRY 338
>sp|Q6NVL5|ELP3_XENTR Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1
Length = 549
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 44/269 (16%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+P+R + + + H+ F C YC DF G PT
Sbjct: 80 AKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 139
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR---FVSSILDTLTDK 143
R Y+Q R + GH +E + GG +L F+ ++ D L+
Sbjct: 140 IRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTFMALSEDYRDFFIRNLHDALSGH 198
Query: 144 FGLSLDAE-------------ISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
S+ I++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 199 TSNSVSEAVRYSERSNTKCVGITIETRPDYCLKRHLSDMLSYGCTRLEIGVQSVYEDVAR 258
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV---------- 240
R H +K V E+ + K G + S H P + L R
Sbjct: 259 DTNRGHTVKAVCESFHMAKDAGFKVVS--------HMMPDLPNVGLERDTEQFIEFFENP 310
Query: 241 GAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
+P + +Y V +GT L+ G +
Sbjct: 311 AFRPDGMKLYPTLVIRGTGLYELWKTGRY 339
>sp|Q9CZX0|ELP3_MOUSE Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=2 SV=1
Length = 547
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 93/269 (34%), Gaps = 44/269 (16%)
Query: 36 TQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTND 86
+PVR + + + H+ F C YC DF G PT
Sbjct: 78 AKPVRTASGIAVVAVMCKPHRCPHISFTGNICIYCPGGPDSDFEYSTQSYTGYEPTSMRA 137
Query: 87 DDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLTDK 143
R ++Q R + GH +E + GG P F+ S+ D L+
Sbjct: 138 IRARYDPFLQTRHRIEQLKQLGHSVDK-VEFIVMGGTFMALPEEYRDYFIRSLHDALSGH 196
Query: 144 FGLSLDAEI-------------SMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190
++ I ++E P R + +++ G R+ +GVQ+ +++ +
Sbjct: 197 TSNNIHEAIKYSERSFTKCVGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVAR 256
Query: 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV---------- 240
R H +K E+ + K G + + H P + L R +
Sbjct: 257 DTNRGHTVKAACESFHLAKDSGFK--------VVTHMMPDLPNVGLERDIEQFIEFFENP 308
Query: 241 GAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
+P + +Y V +GT L+ G +
Sbjct: 309 AFRPDGLKLYPTLVIRGTGLYELWKSGRY 337
>sp|Q5L0E8|MIAB_GEOKA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus kaustophilus (strain HTA426) GN=miaB PE=3
SV=1
Length = 531
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 158 PGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN 215
P FD R +E L G V + L VQ+ E+LK GR + +E E + +K + +
Sbjct: 317 PRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIK-AAIPD 375
Query: 216 WSL--DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGE 268
+L D+I P++T + +EE+L S+Y +VE + + +Y+P E
Sbjct: 376 VALTTDIIVGFPNETDEQFEETL-----------SLYR-EVEFDSAYTFIYSPRE 418
>sp|A4IMH7|MIAB_GEOTN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=miaB PE=3 SV=2
Length = 523
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 158 PGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN 215
P FD R +E L G V + L VQ+ E+LK GR + +E E + +K + +
Sbjct: 317 PRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIK-AAIPD 375
Query: 216 WSL--DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGE 268
+L D+I P++T + +EE+L S+Y +VE + + +Y+P E
Sbjct: 376 VALTTDIIVGFPNETDEQFEETL-----------SLYR-EVEFDSAYTFIYSPRE 418
>sp|O14023|ELP3_SCHPO Probable elongator complex protein 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=elp3 PE=3 SV=1
Length = 544
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 26/201 (12%)
Query: 37 QPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFPIVA---LGSSPTQTNDD 87
+PVR + + + H+ C YC DF G PT
Sbjct: 76 KPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQSYTGYEPTSMRAI 135
Query: 88 DPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSLVPPRFVSSILDTLTDKF 144
R Y Q R GH T +E + GG P F++++ + L+
Sbjct: 136 RARYDPYEQARGRVEQLRSLGH-TVDKVEYIIMGGTFMSLPESYRHTFIANLHNALSGAT 194
Query: 145 GLSLDAE-------------ISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKS 191
LD I++E P + ++E++ G R+ +GVQ+ +++ +
Sbjct: 195 TEDLDEAVKFSEQSETKCVGITIETRPDYCLDQHLDEMLRYGCTRLEIGVQSVYEDVARD 254
Query: 192 CGRAHGLKEVYEAIEIVKLCG 212
R H +K V E ++ K G
Sbjct: 255 TNRGHTVKAVCETFQLAKDTG 275
>sp|Q02908|ELP3_YEAST Elongator complex protein 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ELP3 PE=1 SV=1
Length = 557
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 102/283 (36%), Gaps = 43/283 (15%)
Query: 20 PKLLRSYLISSSTSEATQPVRQNASTKITPQLSPTSAYIHLPFCRKRCHYC------DFP 73
P + YL+ + +PVR + + + H+ + C YC DF
Sbjct: 74 PDQYKKYLLPKLKA---KPVRTASGIAVVAVMCKPHRCPHIAYTGNICVYCPGGPDSDFE 130
Query: 74 IVA---LGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG---GTPSL 127
G PT R Y Q R + GH +E V GG P
Sbjct: 131 YSTQSYTGYEPTSMRAIRARYDPYEQARGRVEQLKQLGHSIDK-VEYVLMGGTFMSLPKE 189
Query: 128 VPPRFVSSILDTLTDKFGLSLDAEI-------------SMEMDPGTFDARKMEELMDLGV 174
F+ + + L+ G +D I ++E P +++++ G
Sbjct: 190 YREDFIVKLHNALSGFNGNDIDEAILYSQQSLTKCVGITIETRPDYCTQTHLDDMLKYGC 249
Query: 175 NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-------- 226
R+ +GVQ+ +++ + R H ++ V E + K G + S ++ LP+
Sbjct: 250 TRLEIGVQSLYEDVARDTNRGHTVRSVCETFAVSKDAGYKVVS-HMMPDLPNVGMERDIE 308
Query: 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF 269
Q + +E RT G + +Y V +GT L+ G +
Sbjct: 309 QFKEYFENPDFRTDG-----LKIYPTLVIRGTGLYELWKTGRY 346
>sp|Q8TWU9|Y932_METKA Uncharacterized protein MK0932 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0932 PE=4
SV=1
Length = 523
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 177 VSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT---PQMWE 233
VS+GV+ LL++ G+ LKE AI +++ G+ + + LP QT ++
Sbjct: 325 VSVGVETGDPRLLRAIGKPSTLKEALRAIRLLRRAGLRPHAY-FVYGLPGQTMKSAKLTA 383
Query: 234 ESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293
++++R V + ++VY + + FG + PG P P +++ + L+ A
Sbjct: 384 KAMKRAVEMGAEKITVYRFRPIPASAFGD-FPPG--PSPRNDEASRLIADTARRLNEALK 440
Query: 294 RH 295
R
Sbjct: 441 RR 442
>sp|Q9K9W9|MOAA_BACHD Cyclic pyranopterin monophosphate synthase OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=moaA PE=3 SV=1
Length = 338
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
Query: 63 CRKRCHYC--------DFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPP 114
C RCHYC D+P L + + ++ R+ + H+TS P
Sbjct: 25 CNFRCHYCMPADIFGPDYPF--LKKTEILSFEETNRLVHLF-------------HQTS-P 68
Query: 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174
++ + GG P + + V ++ LT G+ +++M + GT + ++L G+
Sbjct: 69 IKKIRITGGEPLM--RKDVDQLISMLTATTGIE---DVAMTTN-GTLLPKMADKLKKAGL 122
Query: 175 NRVSLGVQAFQDELL-KSCGRAHGLKEVYEAIEIVKLCGV 213
RV++ + + +DE K GR G K V + +E K G+
Sbjct: 123 KRVTVSLDSLEDEQFGKINGRGIGTKPVLDGMEAAKEAGL 162
>sp|Q58882|Y1487_METJA Uncharacterized methyltransferase MJ1487 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1487 PE=3 SV=1
Length = 426
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 179 LGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLR 237
+G Q+ +++L+ C R H +++VY A+ + + G+ +D I LP +T + E++++
Sbjct: 296 IGAQSGSEKVLELCHRGHTVEDVYNAVRVARKAGL-GVDVDFIFGLPGETEEDVEKTIK 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,088,890
Number of Sequences: 539616
Number of extensions: 7872473
Number of successful extensions: 18232
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 18125
Number of HSP's gapped (non-prelim): 101
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)