Query 012112
Match_columns 471
No_of_seqs 377 out of 2826
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 23:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07379 coproporphyrinogen II 100.0 6.7E-88 1.5E-92 697.3 46.3 388 50-469 7-396 (400)
2 PRK06582 coproporphyrinogen II 100.0 1.8E-87 4E-92 690.6 43.6 375 51-466 9-389 (390)
3 COG0635 HemN Coproporphyrinoge 100.0 2.9E-85 6.4E-90 676.6 43.1 380 52-469 33-413 (416)
4 PRK06294 coproporphyrinogen II 100.0 3.1E-84 6.7E-89 663.9 43.0 366 51-466 4-370 (370)
5 PRK09057 coproporphyrinogen II 100.0 2.3E-84 4.9E-89 667.5 41.1 374 51-466 2-379 (380)
6 PRK09058 coproporphyrinogen II 100.0 1.4E-83 3.1E-88 673.9 44.6 380 50-470 58-440 (449)
7 PRK05799 coproporphyrinogen II 100.0 3.5E-82 7.5E-87 651.4 44.6 372 52-466 2-373 (374)
8 PRK05628 coproporphyrinogen II 100.0 3.7E-82 8.1E-87 651.0 43.5 372 53-466 2-374 (375)
9 PRK05660 HemN family oxidoredu 100.0 1.9E-81 4.1E-86 645.1 43.2 367 53-467 6-377 (378)
10 PRK08599 coproporphyrinogen II 100.0 3.5E-80 7.6E-85 637.0 44.0 375 53-467 1-375 (377)
11 PRK08898 coproporphyrinogen II 100.0 2.6E-80 5.5E-85 640.0 43.1 372 52-466 18-393 (394)
12 PRK08446 coproporphyrinogen II 100.0 4.5E-80 9.7E-85 629.1 39.9 348 55-466 2-349 (350)
13 TIGR00539 hemN_rel putative ox 100.0 7.9E-80 1.7E-84 630.3 41.8 348 54-418 1-348 (360)
14 PRK05904 coproporphyrinogen II 100.0 1.9E-79 4.1E-84 623.3 39.6 349 51-466 4-353 (353)
15 PRK08208 coproporphyrinogen II 100.0 4.2E-76 9.1E-81 615.0 41.6 371 50-467 36-417 (430)
16 PRK13347 coproporphyrinogen II 100.0 9.1E-76 2E-80 616.3 43.4 380 49-466 46-439 (453)
17 PRK09249 coproporphyrinogen II 100.0 1.1E-74 2.5E-79 608.3 44.4 384 49-470 45-443 (453)
18 TIGR00538 hemN oxygen-independ 100.0 5.3E-74 1.2E-78 603.9 44.8 380 50-468 46-441 (455)
19 PRK08629 coproporphyrinogen II 100.0 7.7E-74 1.7E-78 596.0 42.8 366 49-468 48-416 (433)
20 PRK08207 coproporphyrinogen II 100.0 3.7E-64 7.9E-69 528.7 34.9 292 51-351 161-474 (488)
21 TIGR01211 ELP3 histone acetylt 100.0 3.6E-33 7.8E-38 294.3 23.3 226 61-289 75-334 (522)
22 TIGR01212 radical SAM protein, 100.0 7.8E-33 1.7E-37 276.2 20.9 166 114-283 77-246 (302)
23 TIGR02026 BchE magnesium-proto 100.0 5.2E-30 1.1E-34 272.7 15.3 221 63-307 203-425 (497)
24 PRK14334 (dimethylallyl)adenos 100.0 2.5E-28 5.5E-33 256.1 22.5 193 49-264 133-338 (440)
25 TIGR01210 conserved hypothetic 100.0 2E-26 4.3E-31 231.1 26.5 204 63-284 25-242 (313)
26 TIGR03471 HpnJ hopanoid biosyn 100.0 2.7E-27 5.9E-32 250.8 19.7 184 63-266 206-389 (472)
27 PRK14333 (dimethylallyl)adenos 99.9 6.9E-27 1.5E-31 245.8 19.3 190 54-263 148-355 (448)
28 PRK14327 (dimethylallyl)adenos 99.9 6.7E-26 1.4E-30 239.7 22.5 193 51-264 209-413 (509)
29 COG1243 ELP3 Histone acetyltra 99.9 6.1E-26 1.3E-30 227.5 20.7 172 112-285 132-322 (515)
30 PRK14329 (dimethylallyl)adenos 99.9 9.5E-26 2.1E-30 237.9 21.4 192 53-264 167-374 (467)
31 PRK14331 (dimethylallyl)adenos 99.9 5E-26 1.1E-30 238.7 19.1 191 53-263 145-345 (437)
32 PRK14330 (dimethylallyl)adenos 99.9 8.2E-26 1.8E-30 236.9 20.1 194 53-265 139-342 (434)
33 PRK14332 (dimethylallyl)adenos 99.9 2.5E-25 5.5E-30 233.3 22.9 190 53-262 153-350 (449)
34 TIGR01579 MiaB-like-C MiaB-lik 99.9 1E-25 2.2E-30 235.1 19.3 189 55-263 139-338 (414)
35 PRK14335 (dimethylallyl)adenos 99.9 2.6E-25 5.6E-30 234.0 21.6 192 55-263 153-358 (455)
36 PRK14338 (dimethylallyl)adenos 99.9 4.6E-25 1E-29 232.4 23.0 204 52-275 153-367 (459)
37 PRK07094 biotin synthase; Prov 99.9 3.8E-25 8.2E-30 223.5 21.4 206 60-292 46-251 (323)
38 PRK14340 (dimethylallyl)adenos 99.9 1.8E-25 3.8E-30 234.4 19.1 190 53-262 148-347 (445)
39 TIGR01574 miaB-methiolase tRNA 99.9 4.7E-25 1E-29 231.4 20.5 192 52-263 143-347 (438)
40 PRK14325 (dimethylallyl)adenos 99.9 5.5E-25 1.2E-29 231.4 20.5 191 53-263 146-349 (444)
41 PRK14337 (dimethylallyl)adenos 99.9 5.4E-25 1.2E-29 231.2 20.4 193 52-263 146-349 (446)
42 PRK14328 (dimethylallyl)adenos 99.9 7.3E-25 1.6E-29 230.0 21.2 214 52-290 145-369 (439)
43 PRK14336 (dimethylallyl)adenos 99.9 7.6E-25 1.6E-29 228.2 20.3 193 52-264 122-325 (418)
44 TIGR00089 RNA modification enz 99.9 6.4E-25 1.4E-29 230.1 17.4 182 63-264 149-340 (429)
45 PRK14326 (dimethylallyl)adenos 99.9 2E-24 4.4E-29 229.3 20.6 192 54-264 157-358 (502)
46 PRK14339 (dimethylallyl)adenos 99.9 2.9E-24 6.3E-29 223.9 19.2 192 52-263 125-330 (420)
47 smart00729 Elp3 Elongator prot 99.9 8E-23 1.7E-27 191.7 24.6 207 56-276 3-211 (216)
48 TIGR01125 MiaB-like tRNA modif 99.9 3.8E-23 8.2E-28 216.7 20.3 190 54-263 135-335 (430)
49 COG0621 MiaB 2-methylthioadeni 99.9 6.9E-23 1.5E-27 210.5 18.6 198 50-263 140-345 (437)
50 COG1242 Predicted Fe-S oxidore 99.9 1.5E-22 3.3E-27 191.6 19.3 215 55-283 25-251 (312)
51 TIGR01578 MiaB-like-B MiaB-lik 99.9 3.4E-22 7.3E-27 208.7 20.1 191 53-263 132-333 (420)
52 PRK14862 rimO ribosomal protei 99.9 1.4E-21 3E-26 205.0 20.3 187 54-263 139-346 (440)
53 PRK06256 biotin synthase; Vali 99.9 1E-20 2.2E-25 192.3 20.0 210 56-290 61-270 (336)
54 TIGR00433 bioB biotin syntheta 99.8 1.4E-19 3.1E-24 180.6 21.5 204 61-292 37-243 (296)
55 PRK09240 thiH thiamine biosynt 99.8 7E-20 1.5E-24 188.0 19.0 204 60-293 81-294 (371)
56 TIGR02351 thiH thiazole biosyn 99.8 4E-19 8.6E-24 182.2 18.5 213 51-293 68-293 (366)
57 TIGR03551 F420_cofH 7,8-dideme 99.8 6.5E-19 1.4E-23 179.4 18.8 211 57-288 40-268 (343)
58 cd01335 Radical_SAM Radical SA 99.8 2.4E-18 5.2E-23 159.1 17.5 179 63-261 7-187 (204)
59 TIGR00423 radical SAM domain p 99.8 5.2E-18 1.1E-22 170.4 18.4 209 58-289 7-234 (309)
60 TIGR03699 mena_SCO4550 menaqui 99.8 2.1E-18 4.6E-23 175.6 15.2 212 56-289 41-267 (340)
61 PRK06245 cofG FO synthase subu 99.8 7.6E-18 1.6E-22 171.2 16.2 210 56-290 12-241 (336)
62 PRK08445 hypothetical protein; 99.8 2.4E-17 5.1E-22 167.7 19.6 224 54-300 37-281 (348)
63 PRK06267 hypothetical protein; 99.8 4.5E-17 9.7E-22 166.1 21.3 199 62-290 36-236 (350)
64 TIGR03700 mena_SCO4494 putativ 99.8 2.4E-17 5.3E-22 168.3 17.2 216 58-300 50-285 (351)
65 COG1032 Fe-S oxidoreductase [E 99.7 5.5E-17 1.2E-21 172.1 19.7 198 55-264 199-405 (490)
66 PRK05481 lipoyl synthase; Prov 99.7 1.1E-16 2.4E-21 158.9 19.6 219 54-308 53-279 (289)
67 PRK12928 lipoyl synthase; Prov 99.7 1.1E-16 2.5E-21 158.5 19.5 217 52-306 58-285 (290)
68 PRK08508 biotin synthase; Prov 99.7 9.9E-17 2.1E-21 158.7 19.0 200 63-289 17-218 (279)
69 PRK09613 thiH thiamine biosynt 99.7 2.3E-16 5.1E-21 165.0 21.9 211 61-293 92-313 (469)
70 PRK00955 hypothetical protein; 99.7 1.7E-16 3.8E-21 169.3 20.0 205 49-268 287-532 (620)
71 PLN02389 biotin synthase 99.7 2.3E-16 5E-21 161.6 19.3 201 62-290 92-298 (379)
72 TIGR03550 F420_cofG 7,8-dideme 99.7 1.1E-16 2.5E-21 161.5 16.3 211 58-299 6-244 (322)
73 PRK15108 biotin synthase; Prov 99.7 7.2E-16 1.6E-20 156.7 20.4 204 57-288 47-254 (345)
74 PF04055 Radical_SAM: Radical 99.7 9.5E-17 2.1E-21 144.2 11.9 161 61-239 5-166 (166)
75 TIGR00510 lipA lipoate synthas 99.7 8.3E-16 1.8E-20 152.7 19.5 219 52-307 61-289 (302)
76 PRK01254 hypothetical protein; 99.7 4.9E-15 1.1E-19 157.3 20.4 199 49-263 367-609 (707)
77 PRK08444 hypothetical protein; 99.6 5.2E-15 1.1E-19 150.4 18.5 203 58-288 51-274 (353)
78 PLN02428 lipoic acid synthase 99.6 1E-14 2.2E-19 146.8 19.1 213 60-307 109-329 (349)
79 COG0502 BioB Biotin synthase a 99.6 1.2E-14 2.6E-19 144.3 18.6 208 55-288 51-261 (335)
80 PRK07360 FO synthase subunit 2 99.6 9E-15 1.9E-19 150.4 18.3 208 58-288 62-290 (371)
81 PRK05926 hypothetical protein; 99.6 1.1E-14 2.4E-19 148.9 18.0 214 59-298 71-304 (370)
82 COG1244 Predicted Fe-S oxidore 99.6 3.8E-13 8.3E-18 130.6 22.3 219 50-286 42-279 (358)
83 PRK05927 hypothetical protein; 99.6 3.9E-14 8.4E-19 144.1 14.4 210 59-288 48-272 (350)
84 KOG2535 RNA polymerase II elon 99.5 1.6E-13 3.5E-18 133.3 15.8 181 102-284 159-359 (554)
85 TIGR03822 AblA_like_2 lysine-2 99.5 7.1E-13 1.5E-17 133.7 20.8 195 60-288 95-294 (321)
86 PRK05301 pyrroloquinoline quin 99.5 3E-12 6.6E-17 132.3 25.8 180 49-253 11-192 (378)
87 PRK13361 molybdenum cofactor b 99.5 5.4E-13 1.2E-17 135.3 19.3 179 55-255 15-194 (329)
88 PRK00164 moaA molybdenum cofac 99.5 1.9E-12 4.2E-17 131.4 17.3 182 55-257 18-200 (331)
89 PRK09234 fbiC FO synthase; Rev 99.5 2.7E-12 5.8E-17 143.2 19.5 206 59-289 529-756 (843)
90 TIGR02109 PQQ_syn_pqqE coenzym 99.5 2E-11 4.3E-16 125.3 24.4 178 51-253 4-183 (358)
91 TIGR02668 moaA_archaeal probab 99.4 4E-12 8.6E-17 127.4 17.3 177 55-255 11-188 (302)
92 COG1031 Uncharacterized Fe-S o 99.4 3.6E-12 7.9E-17 128.5 14.9 186 63-263 193-414 (560)
93 PRK09234 fbiC FO synthase; Rev 99.4 5.3E-12 1.2E-16 140.8 17.6 202 58-288 73-304 (843)
94 TIGR02666 moaA molybdenum cofa 99.4 3.5E-11 7.5E-16 122.3 20.7 184 55-258 11-196 (334)
95 TIGR02493 PFLA pyruvate format 99.4 9.1E-11 2E-15 113.2 20.8 206 58-285 20-233 (235)
96 PLN02951 Molybderin biosynthes 99.4 3.8E-11 8.3E-16 123.5 19.1 185 55-260 59-244 (373)
97 PTZ00413 lipoate synthase; Pro 99.3 1.8E-10 3.9E-15 115.8 21.4 215 56-306 152-376 (398)
98 KOG2492 CDK5 activator-binding 99.3 1.5E-11 3.3E-16 122.1 13.1 189 63-266 230-446 (552)
99 KOG4355 Predicted Fe-S oxidore 99.3 2E-11 4.3E-16 120.5 12.4 87 176-263 300-388 (547)
100 COG1060 ThiH Thiamine biosynth 99.3 2.6E-10 5.6E-15 116.4 19.9 217 52-289 55-287 (370)
101 PF06969 HemN_C: HemN C-termin 99.2 1.6E-11 3.4E-16 94.6 5.9 66 365-456 1-66 (66)
102 PRK11145 pflA pyruvate formate 99.2 6.7E-10 1.4E-14 108.0 18.7 217 53-294 20-243 (246)
103 COG2896 MoaA Molybdenum cofact 99.2 3.1E-10 6.8E-15 112.6 15.8 134 114-256 59-192 (322)
104 TIGR01290 nifB nitrogenase cof 99.2 8.5E-09 1.8E-13 108.3 24.8 163 115-288 79-259 (442)
105 TIGR03470 HpnH hopanoid biosyn 99.2 2.5E-09 5.3E-14 108.0 19.9 202 52-287 26-228 (318)
106 COG2100 Predicted Fe-S oxidore 99.2 1.3E-09 2.8E-14 106.0 16.7 210 63-295 117-332 (414)
107 COG1856 Uncharacterized homolo 99.2 1.7E-09 3.8E-14 100.0 16.5 203 55-288 13-218 (275)
108 TIGR02495 NrdG2 anaerobic ribo 99.1 8.3E-09 1.8E-13 96.3 18.3 159 58-243 21-183 (191)
109 PRK14456 ribosomal RNA large s 99.1 4.1E-08 8.9E-13 100.5 24.3 203 63-296 131-346 (368)
110 PRK14460 ribosomal RNA large s 99.1 7.6E-08 1.6E-12 98.3 25.3 205 63-295 112-324 (354)
111 PRK13745 anaerobic sulfatase-m 99.0 8.9E-08 1.9E-12 100.2 25.9 191 50-254 9-205 (412)
112 TIGR03820 lys_2_3_AblA lysine- 99.0 1.2E-08 2.7E-13 105.2 18.0 198 56-290 110-314 (417)
113 TIGR00238 KamA family protein. 99.0 3.5E-08 7.7E-13 100.0 20.1 197 56-289 115-318 (331)
114 PRK13758 anaerobic sulfatase-m 99.0 1.6E-07 3.5E-12 96.8 24.5 186 52-251 2-193 (370)
115 PRK14455 ribosomal RNA large s 99.0 2.6E-07 5.6E-12 94.5 24.4 204 63-295 119-329 (356)
116 COG2516 Biotin synthase-relate 98.9 2.1E-08 4.6E-13 97.8 14.7 231 50-302 28-265 (339)
117 PRK13762 tRNA-modifying enzyme 98.9 6.9E-08 1.5E-12 97.5 18.4 161 115-294 130-294 (322)
118 COG0535 Predicted Fe-S oxidore 98.9 9E-08 1.9E-12 97.1 19.4 182 51-256 16-199 (347)
119 PRK14463 ribosomal RNA large s 98.9 3.4E-07 7.4E-12 93.3 22.3 207 55-296 104-318 (349)
120 TIGR03278 methan_mark_10 putat 98.8 2.1E-07 4.5E-12 96.4 19.2 188 95-296 56-248 (404)
121 PRK14468 ribosomal RNA large s 98.8 7.7E-07 1.7E-11 90.6 22.4 210 54-296 93-314 (343)
122 PRK14469 ribosomal RNA large s 98.8 1.1E-06 2.3E-11 89.8 22.5 208 53-295 100-317 (343)
123 PRK14470 ribosomal RNA large s 98.8 1.9E-06 4.2E-11 87.3 24.1 207 54-295 97-314 (336)
124 TIGR03821 AblA_like_1 lysine-2 98.7 4.9E-07 1.1E-11 91.3 17.6 197 55-290 98-302 (321)
125 PRK14466 ribosomal RNA large s 98.7 1.7E-06 3.7E-11 87.5 20.9 198 63-295 113-317 (345)
126 TIGR00048 radical SAM enzyme, 98.7 4.8E-06 1E-10 85.2 24.4 203 63-296 115-326 (355)
127 COG0641 AslB Arylsulfatase reg 98.7 2.1E-06 4.6E-11 88.3 20.4 176 63-256 18-196 (378)
128 PRK14459 ribosomal RNA large s 98.7 2E-06 4.3E-11 88.1 19.9 207 63-296 131-352 (373)
129 PRK14457 ribosomal RNA large s 98.7 2.4E-06 5.2E-11 86.9 20.0 201 62-296 110-323 (345)
130 COG0320 LipA Lipoate synthase 98.6 3.2E-06 6.8E-11 81.2 17.6 219 56-307 73-295 (306)
131 COG1533 SplB DNA repair photol 98.6 3.9E-06 8.5E-11 83.6 19.0 185 63-257 39-226 (297)
132 PRK14462 ribosomal RNA large s 98.6 8.5E-06 1.8E-10 83.1 21.6 202 63-295 120-330 (356)
133 COG0731 Fe-S oxidoreductases [ 98.5 8E-06 1.7E-10 80.4 18.6 177 61-256 32-216 (296)
134 PRK14467 ribosomal RNA large s 98.4 1.5E-05 3.4E-10 81.1 18.9 208 54-295 99-321 (348)
135 PRK11194 ribosomal RNA large s 98.4 8.7E-05 1.9E-09 76.2 24.2 201 63-296 113-330 (372)
136 PRK14454 ribosomal RNA large s 98.4 9.2E-05 2E-09 75.4 24.1 201 63-296 111-319 (342)
137 KOG2900 Biotin synthase [Coenz 98.4 1.5E-06 3.3E-11 82.0 9.9 189 56-263 87-278 (380)
138 COG1180 PflA Pyruvate-formate 98.4 6.1E-05 1.3E-09 73.9 21.2 167 53-243 35-203 (260)
139 TIGR02494 PFLE_PFLC glycyl-rad 98.3 5.5E-05 1.2E-09 75.5 20.1 156 115-281 126-288 (295)
140 PRK14453 chloramphenicol/florf 98.2 0.00015 3.2E-09 74.0 20.7 200 63-295 110-322 (347)
141 COG2108 Uncharacterized conser 98.2 3.1E-05 6.8E-10 76.1 14.4 169 62-256 37-205 (353)
142 PRK14465 ribosomal RNA large s 98.2 0.0002 4.4E-09 72.7 20.3 200 63-296 115-322 (342)
143 COG1625 Fe-S oxidoreductase, r 98.2 7.7E-05 1.7E-09 75.9 17.0 168 119-295 84-253 (414)
144 TIGR03365 Bsubt_queE 7-cyano-7 98.2 0.00015 3.2E-09 70.3 18.3 138 54-223 23-160 (238)
145 PF13394 Fer4_14: 4Fe-4S singl 98.0 3.6E-06 7.7E-11 72.2 3.3 94 56-164 1-95 (119)
146 PRK14464 ribosomal RNA large s 98.0 0.00029 6.2E-09 71.6 16.4 206 55-296 97-310 (344)
147 COG4277 Predicted DNA-binding 98.0 5E-05 1.1E-09 73.7 10.2 174 115-300 102-296 (404)
148 COG1509 KamA Lysine 2,3-aminom 97.9 0.00085 1.8E-08 67.3 17.3 201 53-289 111-317 (369)
149 PRK14461 ribosomal RNA large s 97.9 0.0039 8.4E-08 63.7 22.1 163 115-296 170-345 (371)
150 PRK10076 pyruvate formate lyas 97.8 0.0035 7.5E-08 59.7 19.6 186 94-295 20-209 (213)
151 TIGR03279 cyano_FeS_chp putati 97.7 0.0013 2.8E-08 68.3 16.8 116 160-284 125-249 (433)
152 COG0820 Predicted Fe-S-cluster 97.7 0.0047 1E-07 62.3 19.2 201 63-295 111-322 (349)
153 KOG2672 Lipoate synthase [Coen 97.5 0.0011 2.5E-08 63.8 12.2 174 56-253 114-294 (360)
154 PF13353 Fer4_12: 4Fe-4S singl 97.3 0.00071 1.5E-08 59.4 7.6 95 52-164 4-99 (139)
155 cd03174 DRE_TIM_metallolyase D 97.0 0.016 3.5E-07 56.5 14.2 130 115-251 33-167 (265)
156 TIGR02491 NrdG anaerobic ribon 97.0 0.0049 1.1E-07 55.6 9.5 81 51-146 15-96 (154)
157 TIGR02826 RNR_activ_nrdG3 anae 96.9 0.0096 2.1E-07 53.3 10.1 102 54-181 16-117 (147)
158 COG0602 NrdG Organic radical a 96.7 0.004 8.6E-08 59.2 6.8 88 52-158 21-108 (212)
159 PRK11121 nrdG anaerobic ribonu 96.7 0.0094 2E-07 53.8 8.7 78 54-144 17-96 (154)
160 COG5014 Predicted Fe-S oxidore 96.5 0.055 1.2E-06 49.0 12.1 115 114-240 91-209 (228)
161 KOG2876 Molybdenum cofactor bi 96.2 0.0044 9.6E-08 59.5 3.6 137 114-260 59-197 (323)
162 TIGR03849 arch_ComA phosphosul 95.9 0.25 5.5E-06 47.5 14.3 114 115-250 25-154 (237)
163 COG1313 PflX Uncharacterized F 95.8 0.82 1.8E-05 45.0 17.0 209 55-297 120-333 (335)
164 cd07944 DRE_TIM_HOA_like 4-hyd 95.8 0.27 6E-06 48.4 14.3 102 129-250 57-158 (266)
165 COG1964 Predicted Fe-S oxidore 95.3 0.3 6.4E-06 50.7 12.9 115 114-241 110-227 (475)
166 COG1809 (2R)-phospho-3-sulfola 94.9 0.47 1E-05 44.8 11.7 121 115-246 44-169 (258)
167 PRK08195 4-hyroxy-2-oxovalerat 94.6 2.5 5.5E-05 43.1 17.8 87 149-249 77-163 (337)
168 TIGR03217 4OH_2_O_val_ald 4-hy 94.6 0.9 1.9E-05 46.3 14.3 87 149-249 76-162 (333)
169 PLN02746 hydroxymethylglutaryl 93.8 0.94 2E-05 46.3 12.5 88 162-251 123-218 (347)
170 PF00682 HMGL-like: HMGL-like 93.3 0.74 1.6E-05 44.2 10.5 128 115-251 28-158 (237)
171 cd07939 DRE_TIM_NifV Streptomy 93.2 1.5 3.2E-05 42.9 12.5 124 115-250 34-159 (259)
172 TIGR02090 LEU1_arch isopropylm 93.1 2 4.4E-05 44.2 13.9 125 115-251 36-162 (363)
173 cd07945 DRE_TIM_CMS Leptospira 93.0 3 6.5E-05 41.4 14.3 87 163-250 77-167 (280)
174 cd07948 DRE_TIM_HCS Saccharomy 92.9 2.1 4.5E-05 42.1 13.0 123 115-249 36-160 (262)
175 cd07940 DRE_TIM_IPMS 2-isoprop 92.7 2.5 5.5E-05 41.5 13.5 123 115-250 34-163 (268)
176 cd07938 DRE_TIM_HMGL 3-hydroxy 92.7 2.1 4.6E-05 42.3 12.9 97 149-250 66-169 (274)
177 cd07937 DRE_TIM_PC_TC_5S Pyruv 92.3 1.6 3.5E-05 43.1 11.4 84 154-250 85-169 (275)
178 TIGR02337 HpaR homoprotocatech 92.1 0.79 1.7E-05 39.0 7.9 71 374-464 32-102 (118)
179 PF13463 HTH_27: Winged helix 92.1 0.59 1.3E-05 35.3 6.4 61 374-454 7-68 (68)
180 TIGR02660 nifV_homocitr homoci 91.7 5.1 0.00011 41.3 14.7 123 115-249 37-161 (365)
181 PRK11512 DNA-binding transcrip 91.6 1 2.2E-05 39.8 8.3 69 374-462 44-112 (144)
182 PRK11858 aksA trans-homoaconit 91.5 5.5 0.00012 41.3 14.8 124 115-250 40-165 (378)
183 PRK05692 hydroxymethylglutaryl 91.4 1.4 3.1E-05 43.8 10.0 108 134-250 61-175 (287)
184 smart00347 HTH_MARR helix_turn 90.7 1.4 3E-05 35.6 7.7 70 378-467 18-87 (101)
185 PRK07535 methyltetrahydrofolat 90.6 5.3 0.00012 39.2 13.0 117 115-240 39-181 (261)
186 TIGR01889 Staph_reg_Sar staphy 90.6 1.4 3.1E-05 37.0 7.8 64 383-466 42-105 (109)
187 cd07941 DRE_TIM_LeuA3 Desulfob 90.4 8.2 0.00018 38.1 14.3 127 115-249 34-170 (273)
188 PF02679 ComA: (2R)-phospho-3- 90.3 0.58 1.3E-05 45.3 5.8 131 91-249 23-166 (244)
189 PRK15452 putative protease; Pr 89.2 2.2 4.9E-05 45.1 9.7 86 162-252 12-98 (443)
190 TIGR00695 uxuA mannonate dehyd 89.1 1.5 3.3E-05 45.4 8.1 87 162-256 12-108 (394)
191 PRK09389 (R)-citramalate synth 89.1 8.5 0.00018 41.4 14.1 124 115-250 38-163 (488)
192 PRK09282 pyruvate carboxylase 89.0 8.7 0.00019 42.3 14.3 119 115-250 40-174 (592)
193 cd07943 DRE_TIM_HOA 4-hydroxy- 88.7 7 0.00015 38.3 12.3 87 149-249 74-160 (263)
194 PRK03573 transcriptional regul 88.4 2.4 5.2E-05 37.3 8.0 69 375-463 36-105 (144)
195 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.3 4.9 0.00011 39.8 10.9 101 92-214 148-250 (275)
196 PRK14041 oxaloacetate decarbox 88.1 9.3 0.0002 40.8 13.4 118 115-250 39-173 (467)
197 PRK13777 transcriptional regul 87.9 2.7 5.9E-05 39.1 8.2 72 374-465 49-120 (185)
198 PRK00915 2-isopropylmalate syn 87.8 12 0.00027 40.4 14.5 127 115-250 40-169 (513)
199 TIGR00977 LeuA_rel 2-isopropyl 87.1 16 0.00034 39.7 14.7 128 115-250 37-174 (526)
200 PRK03902 manganese transport t 87.1 4.2 9.2E-05 35.8 8.7 64 372-461 10-73 (142)
201 COG2238 RPS19A Ribosomal prote 86.8 1.4 2.9E-05 38.6 5.1 61 380-470 80-140 (147)
202 PRK11613 folP dihydropteroate 86.7 25 0.00054 35.0 14.7 115 115-241 52-206 (282)
203 PRK10870 transcriptional repre 86.5 3.3 7.1E-05 38.1 7.9 70 374-463 59-130 (176)
204 PRK14165 winged helix-turn-hel 86.3 3.4 7.4E-05 39.4 8.1 70 376-468 13-82 (217)
205 PRK09333 30S ribosomal protein 86.1 4.9 0.00011 35.9 8.4 69 375-469 58-139 (150)
206 PRK12344 putative alpha-isopro 86.1 13 0.00028 40.4 13.4 128 115-249 41-177 (524)
207 COG0826 Collagenase and relate 86.1 4.5 9.7E-05 41.5 9.4 87 162-252 15-101 (347)
208 PRK14040 oxaloacetate decarbox 85.9 8.6 0.00019 42.3 12.0 119 115-250 41-175 (593)
209 PRK12331 oxaloacetate decarbox 85.4 7.3 0.00016 41.4 10.9 101 92-214 153-255 (448)
210 PRK03906 mannonate dehydratase 85.3 3.4 7.3E-05 42.9 8.1 85 162-254 12-106 (385)
211 PF01261 AP_endonuc_2: Xylose 85.0 8.9 0.00019 35.1 10.3 111 166-293 1-126 (213)
212 PRK12330 oxaloacetate decarbox 84.7 8.6 0.00019 41.3 11.0 107 92-219 154-262 (499)
213 cd07943 DRE_TIM_HOA 4-hydroxy- 84.7 8.3 0.00018 37.7 10.3 87 115-214 155-243 (263)
214 PRK14041 oxaloacetate decarbox 84.5 23 0.00049 37.9 14.1 101 92-214 152-254 (467)
215 TIGR00542 hxl6Piso_put hexulos 84.3 18 0.00039 35.5 12.6 123 162-297 18-152 (279)
216 cd07939 DRE_TIM_NifV Streptomy 84.3 8.9 0.00019 37.4 10.3 101 92-214 138-241 (259)
217 TIGR00284 dihydropteroate synt 83.6 28 0.00061 37.5 14.3 128 96-241 165-305 (499)
218 PRK12581 oxaloacetate decarbox 83.5 8.8 0.00019 40.9 10.4 106 92-220 162-269 (468)
219 PRK12331 oxaloacetate decarbox 81.9 30 0.00066 36.8 13.7 119 115-250 40-174 (448)
220 COG0159 TrpA Tryptophan syntha 81.8 30 0.00065 34.0 12.6 102 162-265 33-144 (265)
221 TIGR01108 oadA oxaloacetate de 81.7 31 0.00067 38.0 14.1 119 115-250 35-169 (582)
222 PRK08091 ribulose-phosphate 3- 81.6 38 0.00082 32.6 13.1 133 150-324 71-207 (228)
223 PRK13210 putative L-xylulose 5 80.4 31 0.00067 33.6 12.7 124 158-294 13-148 (284)
224 PRK14042 pyruvate carboxylase 80.2 36 0.00078 37.5 13.9 101 92-214 153-255 (596)
225 cd02072 Glm_B12_BD B12 binding 80.1 10 0.00022 33.1 7.8 87 168-262 22-121 (128)
226 TIGR00973 leuA_bact 2-isopropy 79.9 22 0.00049 38.2 12.2 125 115-249 37-165 (494)
227 cd07940 DRE_TIM_IPMS 2-isoprop 79.6 15 0.00033 35.9 10.1 102 92-212 142-245 (268)
228 PRK09282 pyruvate carboxylase 79.3 55 0.0012 36.1 15.1 100 93-214 154-255 (592)
229 PRK09722 allulose-6-phosphate 79.3 21 0.00046 34.3 10.5 146 136-326 50-199 (229)
230 TIGR03217 4OH_2_O_val_ald 4-hy 79.2 13 0.00029 37.8 9.7 88 115-214 157-246 (333)
231 COG1735 Php Predicted metal-de 79.1 22 0.00048 35.5 10.7 115 90-224 111-227 (316)
232 PRK13209 L-xylulose 5-phosphat 79.0 40 0.00086 33.0 12.9 121 162-297 23-157 (283)
233 PRK08883 ribulose-phosphate 3- 78.7 12 0.00025 35.8 8.6 177 96-325 12-196 (220)
234 PRK14040 oxaloacetate decarbox 77.9 75 0.0016 35.1 15.6 101 92-214 154-256 (593)
235 PF00682 HMGL-like: HMGL-like 77.3 17 0.00036 34.7 9.4 98 93-211 137-236 (237)
236 cd00423 Pterin_binding Pterin 77.1 37 0.0008 33.1 11.8 119 115-242 38-197 (258)
237 PF01090 Ribosomal_S19e: Ribos 77.1 9.1 0.0002 33.8 6.6 66 377-467 59-137 (139)
238 PRK08195 4-hyroxy-2-oxovalerat 76.7 16 0.00035 37.2 9.5 88 115-214 158-247 (337)
239 TIGR01108 oadA oxaloacetate de 76.7 66 0.0014 35.4 14.7 100 93-214 149-250 (582)
240 PRK05692 hydroxymethylglutaryl 76.4 27 0.00058 34.8 10.8 80 92-184 154-235 (287)
241 PF14947 HTH_45: Winged helix- 76.4 11 0.00023 29.6 6.4 53 382-461 17-69 (77)
242 PRK12330 oxaloacetate decarbox 76.3 31 0.00068 37.1 11.8 119 115-250 41-175 (499)
243 PF03786 UxuA: D-mannonate deh 75.3 3.1 6.8E-05 42.4 3.8 85 163-255 14-109 (351)
244 PRK11572 copper homeostasis pr 75.1 23 0.0005 34.5 9.5 59 116-185 29-98 (248)
245 PRK07329 hypothetical protein; 75.0 25 0.00054 34.0 10.0 111 89-217 121-244 (246)
246 PF07745 Glyco_hydro_53: Glyco 74.9 6.3 0.00014 40.1 5.9 133 161-306 25-181 (332)
247 cd00739 DHPS DHPS subgroup of 74.5 82 0.0018 30.8 13.5 117 115-240 38-192 (257)
248 PRK11050 manganese transport r 74.0 23 0.00049 31.7 8.7 69 368-462 35-103 (152)
249 TIGR02702 SufR_cyano iron-sulf 73.9 12 0.00027 35.0 7.3 45 373-418 4-48 (203)
250 TIGR03234 OH-pyruv-isom hydrox 73.8 43 0.00093 32.2 11.4 74 163-250 17-104 (254)
251 cd07947 DRE_TIM_Re_CS Clostrid 73.7 40 0.00088 33.4 11.2 120 115-251 40-171 (279)
252 PRK04165 acetyl-CoA decarbonyl 72.7 46 0.00099 35.4 11.8 183 65-293 15-226 (450)
253 PLN02321 2-isopropylmalate syn 72.3 72 0.0016 35.5 13.7 128 115-250 122-260 (632)
254 PRK08745 ribulose-phosphate 3- 72.3 23 0.00049 33.9 8.7 177 96-324 16-199 (223)
255 cd03174 DRE_TIM_metallolyase D 72.0 30 0.00066 33.3 9.9 101 93-214 146-248 (265)
256 TIGR00876 tal_mycobact transal 72.0 1.2E+02 0.0027 31.0 16.4 100 129-244 71-181 (350)
257 PF13601 HTH_34: Winged helix 71.9 15 0.00033 29.0 6.3 71 375-465 5-76 (80)
258 COG1321 TroR Mn-dependent tran 71.6 26 0.00056 31.5 8.4 64 373-462 13-76 (154)
259 TIGR03822 AblA_like_2 lysine-2 71.6 77 0.0017 32.0 12.9 115 115-242 168-293 (321)
260 PRK13125 trpA tryptophan synth 71.5 36 0.00077 32.9 10.1 120 117-260 7-142 (244)
261 PRK05265 pyridoxine 5'-phospha 71.5 72 0.0016 30.8 11.7 99 129-251 53-155 (239)
262 PF10007 DUF2250: Uncharacteri 71.3 13 0.00027 30.5 5.7 78 375-459 12-90 (92)
263 PTZ00095 40S ribosomal protein 71.2 18 0.00039 32.9 7.2 44 401-468 121-164 (169)
264 PRK09875 putative hydrolase; P 71.0 1.2E+02 0.0025 30.4 15.0 179 90-299 97-280 (292)
265 PRK02261 methylaspartate mutas 70.4 18 0.00039 31.8 7.0 81 162-261 43-124 (137)
266 PLN02746 hydroxymethylglutaryl 70.2 42 0.00092 34.4 10.6 65 115-184 211-277 (347)
267 cd07945 DRE_TIM_CMS Leptospira 70.2 42 0.00091 33.3 10.4 101 93-214 147-250 (280)
268 PF13730 HTH_36: Helix-turn-he 69.9 22 0.00047 25.5 6.3 50 365-415 3-55 (55)
269 TIGR03849 arch_ComA phosphosul 69.7 44 0.00096 32.3 10.0 107 128-245 9-115 (237)
270 PF13412 HTH_24: Winged helix- 69.5 19 0.00042 25.0 5.8 43 373-416 6-48 (48)
271 PRK07328 histidinol-phosphatas 68.7 36 0.00078 33.3 9.6 71 131-217 177-256 (269)
272 PLN03228 methylthioalkylmalate 68.6 73 0.0016 34.4 12.4 78 169-250 177-259 (503)
273 PRK15447 putative protease; Pr 68.4 22 0.00048 35.6 8.1 79 162-252 17-97 (301)
274 TIGR01501 MthylAspMutase methy 68.2 39 0.00085 29.7 8.6 86 168-261 24-122 (134)
275 PF01729 QRPTase_C: Quinolinat 68.0 7.7 0.00017 35.5 4.3 57 115-182 101-157 (169)
276 TIGR00284 dihydropteroate synt 67.9 64 0.0014 34.8 11.8 61 149-220 151-215 (499)
277 PRK05265 pyridoxine 5'-phospha 67.7 11 0.00024 36.3 5.4 79 129-218 111-189 (239)
278 cd07944 DRE_TIM_HOA_like 4-hyd 67.1 58 0.0013 32.0 10.6 85 115-211 152-238 (266)
279 COG1846 MarR Transcriptional r 67.0 22 0.00048 29.4 6.8 67 376-462 28-94 (126)
280 cd07942 DRE_TIM_LeuA Mycobacte 66.8 78 0.0017 31.5 11.5 111 92-214 155-267 (284)
281 cd07948 DRE_TIM_HCS Saccharomy 66.5 78 0.0017 31.0 11.4 102 164-294 26-127 (262)
282 TIGR00559 pdxJ pyridoxine 5'-p 66.0 23 0.00049 34.2 7.1 80 129-218 108-187 (237)
283 PF03932 CutC: CutC family; I 65.7 39 0.00085 31.8 8.6 103 119-247 31-144 (201)
284 cd00003 PNPsynthase Pyridoxine 65.5 12 0.00026 35.9 5.2 110 122-244 101-210 (234)
285 smart00642 Aamy Alpha-amylase 65.4 16 0.00036 33.1 5.9 63 164-227 23-97 (166)
286 TIGR00683 nanA N-acetylneurami 65.1 1.2E+02 0.0027 30.0 12.7 79 164-251 25-104 (290)
287 smart00550 Zalpha Z-DNA-bindin 65.0 27 0.00058 26.6 6.2 49 370-419 6-56 (68)
288 PRK12656 fructose-6-phosphate 64.8 37 0.0008 32.5 8.4 100 124-251 28-134 (222)
289 PF01638 HxlR: HxlR-like helix 64.7 22 0.00048 28.6 6.0 63 384-467 18-81 (90)
290 PRK12999 pyruvate carboxylase; 64.7 42 0.00091 40.1 10.5 105 92-219 690-796 (1146)
291 PRK07896 nicotinate-nucleotide 64.5 18 0.00039 36.0 6.5 60 115-185 220-279 (289)
292 PF01208 URO-D: Uroporphyrinog 64.4 19 0.00041 36.4 6.9 103 114-241 195-307 (343)
293 PRK14057 epimerase; Provisiona 64.2 1.1E+02 0.0024 29.9 11.7 175 96-324 32-221 (254)
294 PF00809 Pterin_bind: Pterin b 64.0 20 0.00044 33.8 6.5 121 115-241 33-190 (210)
295 TIGR01235 pyruv_carbox pyruvat 63.8 45 0.00097 39.8 10.5 101 92-214 688-790 (1143)
296 PRK08005 epimerase; Validated 63.3 23 0.0005 33.6 6.7 93 136-259 49-142 (210)
297 cd00090 HTH_ARSR Arsenical Res 62.6 55 0.0012 24.0 7.7 55 384-462 20-74 (78)
298 smart00418 HTH_ARSR helix_turn 62.3 40 0.00086 24.0 6.7 36 382-418 8-43 (66)
299 cd07942 DRE_TIM_LeuA Mycobacte 62.3 1.7E+02 0.0037 29.1 13.2 121 115-242 37-168 (284)
300 cd02810 DHOD_DHPD_FMN Dihydroo 62.3 89 0.0019 30.7 11.1 82 164-251 115-197 (289)
301 TIGR02090 LEU1_arch isopropylm 62.0 57 0.0012 33.6 9.9 63 115-183 155-219 (363)
302 PRK08392 hypothetical protein; 61.9 44 0.00094 31.5 8.4 68 130-214 136-205 (215)
303 cd07941 DRE_TIM_LeuA3 Desulfob 61.9 84 0.0018 30.9 10.7 82 115-209 165-248 (273)
304 TIGR01037 pyrD_sub1_fam dihydr 61.8 1.1E+02 0.0025 30.2 11.8 141 127-296 139-292 (300)
305 PRK09856 fructoselysine 3-epim 61.5 1E+02 0.0023 29.7 11.4 118 162-294 15-144 (275)
306 TIGR01496 DHPS dihydropteroate 61.2 1.3E+02 0.0029 29.3 11.8 100 133-242 63-192 (257)
307 PRK04172 pheS phenylalanyl-tRN 61.1 26 0.00057 37.6 7.5 65 373-461 9-73 (489)
308 PLN00196 alpha-amylase; Provis 60.8 18 0.00039 38.2 6.0 63 163-226 47-118 (428)
309 PRK01362 putative translaldola 60.7 55 0.0012 31.1 8.8 98 125-252 29-131 (214)
310 cd06808 PLPDE_III Type III Pyr 60.6 1.4E+02 0.003 27.4 12.3 121 162-293 45-180 (211)
311 PRK12346 transaldolase A; Prov 60.3 96 0.0021 31.4 10.8 101 131-255 67-182 (316)
312 cd00408 DHDPS-like Dihydrodipi 59.4 1.3E+02 0.0028 29.5 11.6 78 164-250 22-99 (281)
313 TIGR00262 trpA tryptophan synt 59.4 30 0.00065 33.8 7.0 88 162-252 26-124 (256)
314 PRK06740 histidinol-phosphatas 59.1 71 0.0015 32.5 9.8 71 131-217 239-319 (331)
315 smart00345 HTH_GNTR helix_turn 58.6 53 0.0011 23.3 6.7 36 383-419 18-54 (60)
316 smart00529 HTH_DTXR Helix-turn 58.5 39 0.00084 27.1 6.5 51 388-464 3-53 (96)
317 TIGR03128 RuMP_HxlA 3-hexulose 58.2 92 0.002 28.9 9.9 106 115-250 25-133 (206)
318 PF02324 Glyco_hydro_70: Glyco 57.5 9.6 0.00021 42.0 3.3 33 195-227 643-678 (809)
319 PRK07428 nicotinate-nucleotide 57.5 53 0.0011 32.8 8.4 60 114-184 216-275 (288)
320 cd03413 CbiK_C Anaerobic cobal 57.4 91 0.002 25.9 8.6 80 199-295 16-95 (103)
321 PLN02361 alpha-amylase 57.4 20 0.00042 37.6 5.5 61 163-224 32-100 (401)
322 PRK05588 histidinol-phosphatas 57.2 58 0.0013 31.5 8.6 69 131-214 166-242 (255)
323 PLN02591 tryptophan synthase 57.1 74 0.0016 31.0 9.2 94 157-253 12-116 (250)
324 PRK14042 pyruvate carboxylase 57.0 1.5E+02 0.0032 32.9 12.3 81 157-250 93-174 (596)
325 PRK08207 coproporphyrinogen II 57.0 1.8E+02 0.004 31.3 13.0 94 115-226 254-363 (488)
326 PRK11858 aksA trans-homoaconit 56.9 88 0.0019 32.4 10.3 86 115-214 159-247 (378)
327 COG1105 FruK Fructose-1-phosph 56.8 2.2E+02 0.0048 28.7 14.5 106 92-218 113-220 (310)
328 COG0036 Rpe Pentose-5-phosphat 56.5 96 0.0021 29.6 9.4 149 96-292 16-168 (220)
329 TIGR00559 pdxJ pyridoxine 5'-p 56.4 62 0.0013 31.2 8.2 85 151-251 64-152 (237)
330 PRK10550 tRNA-dihydrouridine s 56.4 2E+02 0.0044 28.9 12.5 144 120-281 106-253 (312)
331 cd00954 NAL N-Acetylneuraminic 56.0 2.1E+02 0.0046 28.2 14.2 78 164-250 25-103 (288)
332 PF12840 HTH_20: Helix-turn-he 55.9 35 0.00077 25.1 5.3 47 372-419 12-58 (61)
333 TIGR01212 radical SAM protein, 55.7 2.2E+02 0.0049 28.4 19.3 158 115-295 109-296 (302)
334 cd07938 DRE_TIM_HMGL 3-hydroxy 55.5 1.6E+02 0.0036 28.9 11.5 78 92-182 148-227 (274)
335 cd07377 WHTH_GntR Winged helix 55.5 57 0.0012 23.6 6.5 32 387-419 28-59 (66)
336 PRK14582 pgaB outer membrane N 55.2 57 0.0012 36.5 8.9 151 137-296 234-398 (671)
337 TIGR02764 spore_ybaN_pdaB poly 55.2 1.5E+02 0.0032 27.1 10.6 165 115-298 7-187 (191)
338 PRK13347 coproporphyrinogen II 55.0 54 0.0012 34.8 8.6 88 164-260 192-296 (453)
339 cd00956 Transaldolase_FSA Tran 55.0 1E+02 0.0022 29.1 9.6 98 125-251 28-130 (211)
340 TIGR02801 tolR TolR protein. T 54.9 43 0.00094 28.7 6.5 47 135-181 79-128 (129)
341 COG1312 UxuA D-mannonate dehyd 54.8 25 0.00053 35.6 5.4 87 162-255 12-107 (362)
342 COG0119 LeuA Isopropylmalate/h 54.1 95 0.0021 32.6 10.0 87 162-250 78-166 (409)
343 TIGR02455 TreS_stutzeri trehal 53.9 67 0.0015 35.7 9.0 135 151-297 52-217 (688)
344 TIGR01884 cas_HTH CRISPR locus 53.8 50 0.0011 30.8 7.3 44 375-419 148-191 (203)
345 PRK03343 transaldolase; Valida 53.6 2.8E+02 0.006 28.8 17.9 100 129-244 81-191 (368)
346 PF07848 PaaX: PaaX-like prote 53.5 25 0.00054 27.2 4.2 32 401-454 39-70 (70)
347 PRK03170 dihydrodipicolinate s 53.4 2.1E+02 0.0045 28.2 12.1 100 114-228 35-139 (292)
348 PF02126 PTE: Phosphotriestera 53.4 2.1E+02 0.0045 28.8 12.0 138 90-248 101-253 (308)
349 TIGR02320 PEP_mutase phosphoen 53.3 47 0.001 33.0 7.3 114 95-236 168-281 (285)
350 PRK10415 tRNA-dihydrouridine s 53.2 2.4E+02 0.0052 28.5 12.5 113 121-253 109-227 (321)
351 PRK08385 nicotinate-nucleotide 53.2 45 0.00097 33.1 7.0 62 115-185 203-264 (278)
352 TIGR02660 nifV_homocitr homoci 52.8 1.1E+02 0.0024 31.5 10.2 101 92-214 141-244 (365)
353 KOG3111 D-ribulose-5-phosphate 52.7 31 0.00067 32.2 5.3 95 135-258 52-147 (224)
354 cd06836 PLPDE_III_ODC_DapDC_li 52.5 87 0.0019 32.3 9.5 97 128-241 8-113 (379)
355 TIGR01334 modD putative molybd 52.5 1.2E+02 0.0026 30.0 9.9 108 117-253 142-266 (277)
356 PF02548 Pantoate_transf: Keto 52.4 1.3E+02 0.0028 29.6 9.9 142 201-358 97-258 (261)
357 cd00003 PNPsynthase Pyridoxine 52.0 2.3E+02 0.005 27.4 11.6 86 150-251 63-152 (234)
358 TIGR01496 DHPS dihydropteroate 51.6 2E+02 0.0044 28.0 11.4 23 164-186 27-49 (257)
359 PF00150 Cellulase: Cellulase 51.6 44 0.00095 32.2 6.8 130 161-296 22-167 (281)
360 cd06831 PLPDE_III_ODC_like_AZI 51.5 91 0.002 32.5 9.4 56 127-191 17-72 (394)
361 TIGR00875 fsa_talC_mipB fructo 51.4 85 0.0018 29.8 8.4 99 124-252 28-131 (213)
362 TIGR00874 talAB transaldolase. 51.3 1.5E+02 0.0033 30.0 10.5 100 131-254 66-180 (317)
363 PRK12581 oxaloacetate decarbox 51.1 89 0.0019 33.4 9.3 80 158-250 103-183 (468)
364 PRK05286 dihydroorotate dehydr 51.1 2E+02 0.0043 29.3 11.7 115 130-252 121-247 (344)
365 TIGR03820 lys_2_3_AblA lysine- 51.0 2.9E+02 0.0064 29.1 12.9 142 126-299 136-283 (417)
366 PRK06096 molybdenum transport 50.9 1.7E+02 0.0036 29.2 10.7 110 116-254 142-268 (284)
367 KOG1321 Protoheme ferro-lyase 50.7 31 0.00067 34.6 5.3 58 120-179 98-159 (395)
368 PRK06252 methylcobalamin:coenz 50.4 2.8E+02 0.006 27.9 15.1 63 115-180 194-260 (339)
369 TIGR01048 lysA diaminopimelate 50.4 86 0.0019 32.7 9.2 52 128-185 30-82 (417)
370 PLN02433 uroporphyrinogen deca 50.0 1.8E+02 0.0039 29.6 11.2 61 115-181 193-261 (345)
371 PRK09989 hypothetical protein; 50.0 2.4E+02 0.0052 27.0 11.9 108 163-294 18-139 (258)
372 PLN03228 methylthioalkylmalate 50.0 1.4E+02 0.0031 32.2 10.7 65 115-181 253-319 (503)
373 PRK09997 hydroxypyruvate isome 49.9 2.4E+02 0.0052 27.0 13.1 111 162-298 17-144 (258)
374 PF03740 PdxJ: Pyridoxal phosp 49.8 77 0.0017 30.7 7.8 102 129-251 51-153 (239)
375 TIGR01515 branching_enzym alph 49.7 42 0.0009 37.2 6.9 75 152-227 140-233 (613)
376 PRK06096 molybdenum transport 49.7 45 0.00097 33.2 6.4 58 115-183 210-267 (284)
377 PRK12928 lipoyl synthase; Prov 49.7 2.4E+02 0.0051 28.1 11.6 147 125-306 84-246 (290)
378 COG2513 PrpB PEP phosphonomuta 49.7 76 0.0016 31.6 7.8 101 95-211 165-271 (289)
379 PRK12376 putative translaldola 49.7 74 0.0016 30.8 7.7 104 124-251 33-145 (236)
380 PRK06559 nicotinate-nucleotide 49.6 37 0.0008 33.9 5.8 58 115-186 218-275 (290)
381 PRK01060 endonuclease IV; Prov 49.6 2.3E+02 0.0049 27.5 11.6 91 156-250 8-109 (281)
382 PRK05848 nicotinate-nucleotide 49.3 44 0.00096 33.0 6.3 59 115-184 203-261 (273)
383 cd04724 Tryptophan_synthase_al 49.1 2.4E+02 0.0051 27.2 11.3 80 155-259 84-166 (242)
384 PF03740 PdxJ: Pyridoxal phosp 48.7 25 0.00054 34.0 4.3 88 129-232 109-202 (239)
385 COG3432 Predicted transcriptio 48.5 36 0.00079 28.0 4.6 38 401-460 47-84 (95)
386 cd00950 DHDPS Dihydrodipicolin 48.0 2.5E+02 0.0055 27.4 11.6 78 164-250 25-102 (284)
387 PRK07259 dihydroorotate dehydr 47.8 2.9E+02 0.0062 27.4 12.1 143 123-296 135-292 (301)
388 PRK13111 trpA tryptophan synth 47.7 46 0.001 32.6 6.1 86 162-249 28-123 (258)
389 TIGR00737 nifR3_yhdG putative 47.6 3E+02 0.0066 27.5 13.9 111 122-251 108-223 (319)
390 TIGR00433 bioB biotin syntheta 47.6 2.6E+02 0.0057 27.4 11.7 18 233-250 123-140 (296)
391 PRK12999 pyruvate carboxylase; 47.5 3.5E+02 0.0075 32.6 14.3 120 115-250 571-711 (1146)
392 PRK07360 FO synthase subunit 2 47.4 3.4E+02 0.0073 28.0 12.9 111 128-246 91-217 (371)
393 smart00420 HTH_DEOR helix_turn 47.3 78 0.0017 21.7 5.9 37 382-419 12-48 (53)
394 TIGR01464 hemE uroporphyrinoge 47.1 2.1E+02 0.0045 28.9 11.1 60 115-181 194-262 (338)
395 TIGR01334 modD putative molybd 47.1 54 0.0012 32.5 6.5 59 114-183 208-266 (277)
396 TIGR02402 trehalose_TreZ malto 47.1 34 0.00074 37.3 5.6 74 152-226 95-186 (542)
397 KOG3411 40S ribosomal protein 47.0 42 0.0009 29.2 4.9 41 402-467 100-140 (143)
398 PRK02048 4-hydroxy-3-methylbut 46.9 1.4E+02 0.003 32.9 9.9 78 165-244 146-228 (611)
399 COG0157 NadC Nicotinate-nucleo 46.8 46 0.001 32.9 5.9 63 115-189 209-271 (280)
400 TIGR01211 ELP3 histone acetylt 46.8 4.2E+02 0.009 28.9 19.8 163 115-307 192-396 (522)
401 cd00439 Transaldolase Transald 46.6 1.7E+02 0.0038 28.4 9.9 82 149-254 84-171 (252)
402 PF08220 HTH_DeoR: DeoR-like h 46.3 61 0.0013 23.7 5.2 45 375-420 5-49 (57)
403 TIGR00674 dapA dihydrodipicoli 46.3 2.8E+02 0.0061 27.2 11.7 52 197-250 49-100 (285)
404 PRK09016 quinolinate phosphori 46.0 44 0.00094 33.5 5.7 56 115-184 229-284 (296)
405 TIGR03433 padR_acidobact trans 46.0 52 0.0011 27.0 5.4 47 402-465 42-88 (100)
406 PRK07428 nicotinate-nucleotide 45.9 2.2E+02 0.0047 28.4 10.6 111 116-254 151-275 (288)
407 PF01047 MarR: MarR family; I 45.7 44 0.00094 24.1 4.4 44 374-418 7-50 (59)
408 PRK00115 hemE uroporphyrinogen 45.7 2.6E+02 0.0057 28.3 11.6 62 114-181 199-268 (346)
409 COG3623 SgaU Putative L-xylulo 45.2 1.2E+02 0.0025 29.4 8.0 96 156-254 13-120 (287)
410 TIGR02403 trehalose_treC alpha 45.1 65 0.0014 35.1 7.4 71 164-235 31-110 (543)
411 KOG2670 Enolase [Carbohydrate 44.9 46 0.00099 33.6 5.5 97 128-239 273-389 (433)
412 cd00019 AP2Ec AP endonuclease 44.8 3E+02 0.0065 26.7 11.8 101 129-239 43-165 (279)
413 cd04908 ACT_Bt0572_1 N-termina 44.8 25 0.00055 26.2 3.0 58 152-214 4-63 (66)
414 TIGR02456 treS_nterm trehalose 44.7 66 0.0014 35.0 7.4 71 164-235 32-111 (539)
415 TIGR00977 LeuA_rel 2-isopropyl 44.4 3.1E+02 0.0067 29.8 12.4 109 164-294 27-137 (526)
416 PF12802 MarR_2: MarR family; 44.3 53 0.0012 23.8 4.7 45 374-419 9-55 (62)
417 PRK09389 (R)-citramalate synth 44.3 3.7E+02 0.0081 28.9 12.9 102 164-294 28-129 (488)
418 PF09012 FeoC: FeoC like trans 44.2 25 0.00054 26.8 2.9 40 379-419 9-48 (69)
419 PTZ00411 transaldolase-like pr 44.2 2.8E+02 0.006 28.3 11.2 100 131-254 78-192 (333)
420 PF02449 Glyco_hydro_42: Beta- 44.2 26 0.00055 36.1 4.0 66 161-233 11-76 (374)
421 PF08915 tRNA-Thr_ED: Archaea- 44.1 1.2E+02 0.0027 26.7 7.5 50 236-297 64-113 (138)
422 PRK09505 malS alpha-amylase; R 44.0 46 0.001 37.4 6.1 63 163-226 233-318 (683)
423 PRK06978 nicotinate-nucleotide 43.8 41 0.00089 33.6 5.1 60 115-188 226-285 (294)
424 COG4822 CbiK Cobalamin biosynt 43.8 3E+02 0.0065 26.4 14.8 84 195-295 148-232 (265)
425 cd04740 DHOD_1B_like Dihydroor 43.6 1.7E+02 0.0038 28.8 9.7 137 128-295 137-288 (296)
426 TIGR01463 mtaA_cmuA methyltran 43.5 3E+02 0.0065 27.7 11.6 64 115-180 194-262 (340)
427 PF01325 Fe_dep_repress: Iron 43.1 1.4E+02 0.0029 22.2 6.8 38 381-419 19-56 (60)
428 PF00834 Ribul_P_3_epim: Ribul 42.6 71 0.0015 30.0 6.3 19 276-294 148-166 (201)
429 PRK14581 hmsF outer membrane N 42.4 3.2E+02 0.007 30.7 12.2 157 138-303 235-408 (672)
430 PRK12653 fructose-6-phosphate 42.3 1.9E+02 0.0041 27.6 9.2 100 124-251 28-132 (220)
431 cd03308 CmuA_CmuC_like CmuA_Cm 42.2 4.1E+02 0.0088 27.4 12.6 68 117-186 233-303 (378)
432 TIGR00620 sporelyase spore pho 42.2 3E+02 0.0065 25.9 12.1 99 142-245 17-118 (199)
433 cd08560 GDPD_EcGlpQ_like_1 Gly 42.1 36 0.00077 35.1 4.6 100 133-252 153-267 (356)
434 COG2896 MoaA Molybdenum cofact 42.1 3.9E+02 0.0084 27.2 15.0 108 126-254 41-161 (322)
435 cd04731 HisF The cyclase subun 41.7 2.1E+02 0.0046 27.2 9.8 101 135-253 61-172 (243)
436 TIGR03551 F420_cofH 7,8-dideme 41.7 3.9E+02 0.0085 27.1 12.7 150 128-305 70-239 (343)
437 PF09106 SelB-wing_2: Elongati 41.6 47 0.001 24.4 4.0 39 381-419 14-54 (59)
438 PRK00915 2-isopropylmalate syn 41.6 4.9E+02 0.011 28.2 13.6 82 92-183 148-231 (513)
439 PF14871 GHL6: Hypothetical gl 41.6 32 0.00069 30.1 3.6 60 163-223 3-67 (132)
440 PRK09441 cytoplasmic alpha-amy 41.4 52 0.0011 35.2 5.9 63 163-226 25-107 (479)
441 cd00622 PLPDE_III_ODC Type III 41.3 1.3E+02 0.0028 30.7 8.6 52 128-186 7-58 (362)
442 PRK06543 nicotinate-nucleotide 41.0 64 0.0014 32.0 6.0 59 115-187 214-272 (281)
443 PRK00035 hemH ferrochelatase; 41.0 3.9E+02 0.0085 26.9 12.3 166 120-305 66-241 (333)
444 TIGR03356 BGL beta-galactosida 40.7 1.7E+02 0.0038 30.8 9.6 92 163-258 57-164 (427)
445 TIGR00055 uppS undecaprenyl di 40.6 66 0.0014 30.9 5.8 66 206-290 12-77 (226)
446 PF00128 Alpha-amylase: Alpha 40.2 16 0.00035 35.6 1.7 73 164-237 8-89 (316)
447 TIGR00238 KamA family protein. 40.2 1.1E+02 0.0024 31.0 7.8 115 115-241 191-315 (331)
448 PF08784 RPA_C: Replication pr 39.9 75 0.0016 26.0 5.4 50 368-418 49-98 (102)
449 cd08602 GDPD_ScGlpQ1_like Glyc 39.9 50 0.0011 33.2 5.2 61 133-195 116-190 (309)
450 PF00701 DHDPS: Dihydrodipicol 39.9 3.3E+02 0.0072 26.7 11.0 79 164-251 26-104 (289)
451 PF00834 Ribul_P_3_epim: Ribul 39.8 52 0.0011 30.9 4.9 107 117-258 30-140 (201)
452 PF05636 HIGH_NTase1: HIGH Nuc 39.6 10 0.00022 39.5 0.1 85 121-213 43-136 (388)
453 PRK03903 transaldolase; Provis 39.6 2.1E+02 0.0047 28.3 9.3 82 128-224 21-108 (274)
454 PLN02389 biotin synthase 39.4 1.1E+02 0.0025 31.7 7.8 44 202-245 178-228 (379)
455 PLN02321 2-isopropylmalate syn 39.4 3.1E+02 0.0068 30.6 11.5 110 164-294 112-225 (632)
456 PRK14837 undecaprenyl pyrophos 39.3 70 0.0015 30.8 5.8 66 206-290 19-84 (230)
457 cd02930 DCR_FMN 2,4-dienoyl-Co 39.2 3.7E+02 0.0081 27.3 11.6 79 168-250 145-244 (353)
458 COG3867 Arabinogalactan endo-1 39.2 55 0.0012 32.7 5.0 167 159-333 62-258 (403)
459 COG1339 Transcriptional regula 39.1 96 0.0021 29.1 6.3 64 383-469 18-81 (214)
460 PLN02417 dihydrodipicolinate s 39.0 3.3E+02 0.0071 26.8 10.8 78 164-250 26-103 (280)
461 PRK14847 hypothetical protein; 38.5 2.9E+02 0.0062 28.2 10.3 27 118-144 174-200 (333)
462 PRK06106 nicotinate-nucleotide 38.5 56 0.0012 32.5 5.1 57 115-185 215-271 (281)
463 PRK10141 DNA-binding transcrip 38.4 2.2E+02 0.0047 24.3 8.1 44 375-419 21-64 (117)
464 COG0042 tRNA-dihydrouridine sy 38.3 2.4E+02 0.0053 28.5 9.9 122 112-250 101-228 (323)
465 TIGR00674 dapA dihydrodipicoli 38.2 4E+02 0.0086 26.2 11.6 99 114-227 32-135 (285)
466 PRK03170 dihydrodipicolinate s 38.1 4E+02 0.0087 26.2 13.7 29 220-248 73-101 (292)
467 COG4742 Predicted transcriptio 38.1 1.1E+02 0.0023 30.1 6.9 61 373-461 16-76 (260)
468 PRK14842 undecaprenyl pyrophos 38.1 68 0.0015 31.1 5.5 66 206-290 21-86 (241)
469 PLN02784 alpha-amylase 38.0 66 0.0014 36.9 6.1 63 163-226 524-594 (894)
470 PRK08446 coproporphyrinogen II 38.0 2E+02 0.0044 29.2 9.4 141 92-253 67-230 (350)
471 cd06810 PLPDE_III_ODC_DapDC_li 37.9 4E+02 0.0088 26.9 11.7 128 125-260 95-253 (368)
472 PRK12309 transaldolase/EF-hand 37.9 4.9E+02 0.011 27.2 13.2 117 150-294 95-223 (391)
473 cd06828 PLPDE_III_DapDC Type I 37.9 4.5E+02 0.0097 26.7 15.7 94 162-258 58-178 (373)
474 TIGR00683 nanA N-acetylneurami 37.8 3.5E+02 0.0076 26.7 10.8 112 115-241 36-154 (290)
475 TIGR02990 ectoine_eutA ectoine 37.7 3.8E+02 0.0083 25.8 11.2 113 113-250 70-188 (239)
476 COG3142 CutC Uncharacterized p 37.5 3.4E+02 0.0074 26.2 9.9 108 115-248 28-146 (241)
477 PRK14847 hypothetical protein; 37.5 4.6E+02 0.01 26.7 12.2 106 164-293 58-165 (333)
478 COG5016 Pyruvate/oxaloacetate 37.3 1.3E+02 0.0027 31.6 7.4 102 91-214 155-257 (472)
479 PHA01735 hypothetical protein 37.2 75 0.0016 24.4 4.4 50 185-234 18-74 (76)
480 PRK12313 glycogen branching en 37.2 84 0.0018 35.0 6.9 61 166-227 177-247 (633)
481 PRK05269 transaldolase B; Prov 37.1 3.3E+02 0.0071 27.6 10.5 100 130-254 67-182 (318)
482 KOG2900 Biotin synthase [Coenz 37.1 67 0.0014 31.3 5.1 74 165-255 125-198 (380)
483 PRK08318 dihydropyrimidine deh 37.0 4.3E+02 0.0092 27.6 11.9 143 127-295 150-311 (420)
484 PLN02417 dihydrodipicolinate s 36.9 4.2E+02 0.009 26.0 11.3 99 114-228 35-137 (280)
485 TIGR02134 transald_staph trans 36.8 98 0.0021 29.9 6.3 101 124-251 33-145 (236)
486 cd03413 CbiK_C Anaerobic cobal 36.7 1.5E+02 0.0032 24.6 6.7 59 117-179 3-61 (103)
487 TIGR01303 IMP_DH_rel_1 IMP deh 36.7 3.5E+02 0.0075 29.1 11.1 118 115-251 238-358 (475)
488 cd00955 Transaldolase_like Tra 36.7 4.8E+02 0.01 26.7 12.4 100 128-243 67-177 (338)
489 cd04724 Tryptophan_synthase_al 36.4 97 0.0021 29.9 6.4 86 162-251 16-112 (242)
490 PRK03620 5-dehydro-4-deoxygluc 36.4 4.4E+02 0.0096 26.2 11.5 29 220-249 79-107 (303)
491 TIGR01235 pyruv_carbox pyruvat 36.4 1.4E+02 0.003 35.8 8.7 80 157-249 622-708 (1143)
492 PRK07945 hypothetical protein; 36.2 1.4E+02 0.0029 30.5 7.7 65 133-214 247-315 (335)
493 PRK13753 dihydropteroate synth 36.2 1.1E+02 0.0023 30.5 6.7 21 276-296 148-168 (279)
494 cd01994 Alpha_ANH_like_IV This 36.1 3.5E+02 0.0076 25.1 9.9 104 92-214 71-176 (194)
495 PRK09249 coproporphyrinogen II 35.8 1.3E+02 0.0029 31.8 7.9 82 164-253 191-289 (453)
496 cd00740 MeTr MeTr subgroup of 35.8 4.2E+02 0.0091 25.7 12.1 119 115-242 40-191 (252)
497 PRK14833 undecaprenyl pyrophos 35.8 89 0.0019 30.2 5.9 66 206-290 17-82 (233)
498 COG5016 Pyruvate/oxaloacetate 35.5 2E+02 0.0042 30.2 8.5 82 157-251 95-177 (472)
499 PF05226 CHASE2: CHASE2 domain 35.5 1.5E+02 0.0033 29.3 7.9 64 185-248 49-113 (310)
500 PRK14830 undecaprenyl pyrophos 35.5 79 0.0017 30.9 5.6 29 228-256 51-79 (251)
No 1
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.7e-88 Score=697.32 Aligned_cols=388 Identities=47% Similarity=0.901 Sum_probs=352.7
Q ss_pred CCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 50 ~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
+..+++||||||||+++|.||+|++...+..... ......++|+++|++||+..... ...+++|||||||||+++
T Consensus 7 ~~~~~~lYiHiPFC~~~C~YC~f~~~~~~~~~~~--~~~~~~~~Y~~~L~~Ei~~~~~~---~~~i~~iy~GGGTps~l~ 81 (400)
T PRK07379 7 ILLPTSAYIHIPFCRRRCFYCDFPISVVGDRTRG--GTSGLIEEYVEVLCQEIAITPSF---GQPLQTVFFGGGTPSLLS 81 (400)
T ss_pred CCCccEEEEEeccccCcCCCCCCccccccccccc--cccchHHHHHHHHHHHHHHhhcc---CCceeEEEECCCccccCC
Confidence 3456899999999999999999987543321100 11235688999999999975321 356999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++++.+|++.|++.+++..++|+|+|+||++++.++++.|+++||||||||||||||++|+.|||.|+.+++.++++.++
T Consensus 82 ~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~ 161 (400)
T PRK07379 82 VEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIH 161 (400)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 210 LCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 210 ~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
++||.+|++|||+|+||||.++|+++++.+.+++|+||++|+|+++|||++++++..|+..+|++++.++||..+.+.|.
T Consensus 162 ~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 241 (400)
T PRK07379 162 QAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILT 241 (400)
T ss_pred HcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhh
Q 012112 290 SAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKD 369 (471)
Q Consensus 290 ~~Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~ 369 (471)
++||.|||+|||||||++|+||..||++.+|+|||+||+|++++.||+|++++.+|.+++++.+.+..+. ..+.++.++
T Consensus 242 ~~Gy~~yeisnfa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~~~~~~-~~~~l~~~~ 320 (400)
T PRK07379 242 QAGYEHYEISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRFTRPRTRKEYYQWVEALIANGGLI-DGEPSSPED 320 (400)
T ss_pred HcCCceeeeeheECCChHHHHHHHHhcCCcEEEEcCCcceecCCEEEEcCCCHHHHHHHHHhhhccCCCc-ceeeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887654333332 456799999
Q ss_pred HHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccce-ee
Q 012112 370 LAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAY-FR 448 (471)
Q Consensus 370 ~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 448 (471)
++.|.+|++||+.+|||++.|+++||.++.+.+.+.++.++++||+..++ + + ++
T Consensus 321 ~~~e~l~~~Lr~~~Gl~~~~~~~~~g~~~~~~~~~~l~~l~~~gll~~~~-~------------------------~~~~ 375 (400)
T PRK07379 321 ELLETLMLGLRLAEGVSLSALTERFGKEIVEQILQCLQPYFQQGWVELEG-D------------------------RRLR 375 (400)
T ss_pred HHHHHHHhCCcccCCcCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEeC-C------------------------eEEE
Confidence 99999999999999999999999999999888999999999999998644 2 4 78
Q ss_pred ecCc-hhhchHHHHHHHHHhcc
Q 012112 449 LSDP-EGFLLSNELISHAFGVI 469 (471)
Q Consensus 449 lt~~-~G~~~~n~i~~~~~~~~ 469 (471)
|| + +|++++|.|+++|+.+.
T Consensus 376 lT-~~~G~~~~~~i~~~~~~~~ 396 (400)
T PRK07379 376 LT-DPEGFLFSNTVLASLFEAL 396 (400)
T ss_pred EC-chHHhHHHHHHHHHHHHHh
Confidence 96 6 99999999999998654
No 2
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.8e-87 Score=690.58 Aligned_cols=375 Identities=28% Similarity=0.529 Sum_probs=345.5
Q ss_pred CCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH
Q 012112 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP 130 (471)
Q Consensus 51 ~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~ 130 (471)
..+++||||||||.++|.||+|++.... .....+|+++|.+||+....... +..+++|||||||||+|++
T Consensus 9 ~~~~~lYiHiPFC~~~C~yC~f~~~~~~---------~~~~~~Y~~aL~~Ei~~~~~~~~-~~~i~tiy~GGGTPs~l~~ 78 (390)
T PRK06582 9 ANDLSIYIHWPFCLSKCPYCDFNSHVAS---------TIDHNQWLKSYEKEIEYFKDIIQ-NKYIKSIFFGGGTPSLMNP 78 (390)
T ss_pred CCCeEEEEEeCCCcCcCCCCCCeeccCC---------CCCHHHHHHHHHHHHHHHHHHcc-CCceeEEEECCCccccCCH
Confidence 3468999999999999999999876421 12367899999999997654432 4579999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL 210 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~ 210 (471)
+++++|++.+++.+.+++.+|||+|+||++++.++++.|+++||||||||||||||++|+.+||.|+.+++.++++.+++
T Consensus 79 ~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~ 158 (390)
T PRK06582 79 VIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANT 158 (390)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 211 CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 211 ~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+ +.+||+|||+|+||||.++|+++++.+.+++|+|||+|+|+++|||++++++++|++.+|++++.++||..+.+.|.+
T Consensus 159 ~-~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 237 (390)
T PRK06582 159 I-FPRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLES 237 (390)
T ss_pred h-CCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 8 667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCC-----eEEEcCCChHHHHHHHHHHhcCCCcccccccC
Q 012112 291 AGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGG-----LRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHI 365 (471)
Q Consensus 291 ~Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~-----~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l 365 (471)
+||.|||+|||||||++|+||..||++.||+|||+||+|++++ .|+.|..++.+|. +.++.|..|+...+.+
T Consensus 238 ~Gy~~yeis~fa~~g~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~~~r~~~~~~~~~Y~---~~~~~~~~p~~~~~~l 314 (390)
T PRK06582 238 KKYFRYEISNYAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIESSSSVSAIMMWHKPEKWL---DAVKTKNVGIQTNTKL 314 (390)
T ss_pred cCCceeeceeeeCCChhhhhHHHHhcCCcEEEECCCeeecccCCCCCceeEEecCCHHHHH---HHHHcCCCCcceeeeC
Confidence 9999999999999999999999999999999999999999863 4688888888775 4566788887677889
Q ss_pred CHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHH-HHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 366 DAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTL-CKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 366 ~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~-~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++++++.|.+|++||+.+|||++.|+++||.++.+.+ .+.++.+++.||+.. + +
T Consensus 315 ~~~e~~~e~i~l~LR~~~Gl~~~~~~~~~g~~~~~~~~~~~l~~l~~~gll~~-~-~----------------------- 369 (390)
T PRK06582 315 THQEIIEEILMMGLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIRL-D-E----------------------- 369 (390)
T ss_pred CHHHHHHHHHHHHHHhhCCCCHHHHHHHHCcCHHHhhhHHHHHHHHHCCCEEE-C-C-----------------------
Confidence 9999999999999999999999999999999998877 489999999999986 3 2
Q ss_pred ceeeecCchhhchHHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHAF 466 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~~ 466 (471)
+++|| ++|++++|+|+++|+
T Consensus 370 -~l~lT-~~G~~~~d~i~~~~~ 389 (390)
T PRK06582 370 -NIYLT-DKGLMLHSYIVPRLI 389 (390)
T ss_pred -EEEEC-cchhHHHHHHHHHHh
Confidence 47996 999999999999986
No 3
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-85 Score=676.60 Aligned_cols=380 Identities=36% Similarity=0.647 Sum_probs=352.9
Q ss_pred CCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHH
Q 012112 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR 131 (471)
Q Consensus 52 ~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~ 131 (471)
.+++||||||||.++|.||+|++.... .....+.|+++|++||+......+....+++|||||||||+|+++
T Consensus 33 ~~~slYiHiPFC~~~C~YC~fn~~~~~--------~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~ 104 (416)
T COG0635 33 KPLSLYIHIPFCVSKCPYCDFNSHVTK--------RGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPE 104 (416)
T ss_pred CceEEEEEcccccccCCCCCCeeeccC--------CCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHH
Confidence 489999999999999999999987642 224688999999999998876654335799999999999999999
Q ss_pred HHHHHHHHHHHHc-CCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH
Q 012112 132 FVSSILDTLTDKF-GLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL 210 (471)
Q Consensus 132 ~l~~ll~~l~~~~-~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~ 210 (471)
++++|++.|++.| .+++++|||+|+||++++.++++.|+++||||||+||||||+++||.+||.|+.+++.++++.+++
T Consensus 105 ~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~ 184 (416)
T COG0635 105 QLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARK 184 (416)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999 588889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 211 CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 211 ~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
.||.+||+|||||+|+||.++|.++++.+++++|+|||+|.|+++|+|++++...+|+ .+|+.+..++||..+.+.|++
T Consensus 185 ~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~ 263 (416)
T COG0635 185 AGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEK 263 (416)
T ss_pred cCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCC-CCcChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhhH
Q 012112 291 AGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDL 370 (471)
Q Consensus 291 ~Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~~ 370 (471)
+||.+||+||||++|++|+||+.||+..||+|+|+||+|++++.+++|..+++.|.+.+ +.|..|+...+.++++|.
T Consensus 264 ~Gy~~yeisnfa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~~~~~n~~~~~~y~~~~---~~~~~~~~~~~~l~~~d~ 340 (416)
T COG0635 264 AGYRQYEISNFAKPGGECRHNLQYWETKDYLGIGAGAHGRIGGTRYQNKKNLKTYLEAV---DEGGLPLVEGEELTPDDL 340 (416)
T ss_pred CCCcEEeechhcCcchHHHhhhccccCCCeEEECCCceeeeccEEEEccCCHHHHHHHH---hcCCCceeeeeeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999988655 478888878888999999
Q ss_pred HHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeec
Q 012112 371 AMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLS 450 (471)
Q Consensus 371 ~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt 450 (471)
..+.+|++||+..||++++|+++||..-.....+.++.++++|++...+ + ++++|
T Consensus 341 ~~e~~i~gLr~~~gv~~~~~~~~~~~~~~~~~~~~l~~~~~~Gll~~~~-~------------------------~~~lt 395 (416)
T COG0635 341 IREALILGLRLNFGVDLAELEERFGIFKFAEILELLAELIADGLLELDG-D------------------------RLRLT 395 (416)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCcchhhhHHHHHHHHHhCCCEEecC-C------------------------EEEEC
Confidence 9999999999999999999999999732445678899999999998643 2 47996
Q ss_pred CchhhchHHHHHHHHHhcc
Q 012112 451 DPEGFLLSNELISHAFGVI 469 (471)
Q Consensus 451 ~~~G~~~~n~i~~~~~~~~ 469 (471)
+.|+++.|.|++.|...+
T Consensus 396 -~~g~~~~~~i~~~f~~~~ 413 (416)
T COG0635 396 -EKGRLLLRSIAEAFDAYL 413 (416)
T ss_pred -CcchhHHHHHHHHHHHHh
Confidence 999999999999998754
No 4
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.1e-84 Score=663.93 Aligned_cols=366 Identities=31% Similarity=0.531 Sum_probs=333.3
Q ss_pred CCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHH-HHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCRE-IIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 51 ~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~E-i~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
..+++||||||||+++|.||+|++... ......+|++++++| ++....... ...+++|||||||||+++
T Consensus 4 ~~~~~lYiHIPFC~~~C~yC~f~~~~~---------~~~~~~~y~~~l~~E~~~~~~~~~~-~~~i~~iy~GGGTPs~l~ 73 (370)
T PRK06294 4 KSPLALYIHIPFCTKKCHYCSFYTIPY---------KEESVSLYCNAVLKEGLKKLAPLRC-SHFIDTVFFGGGTPSLVP 73 (370)
T ss_pred CCceEEEEEeCCccCcCCCCcCcccCC---------CccCHHHHHHHHHHHHHHHhhhhcc-CCceeEEEECCCccccCC
Confidence 356899999999999999999987531 123467899999999 665433221 356999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++++.+|++.|++. +++|||+|+||+++++++++.|+++||||||||||||++++|+.+||.|+.+++.++++.++
T Consensus 74 ~~~l~~ll~~i~~~----~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~ 149 (370)
T PRK06294 74 PALIQDILKTLEAP----HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECS 149 (370)
T ss_pred HHHHHHHHHHHHhC----CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999764 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 210 LCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 210 ~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
++||.+|++|||+|+||||.++|.++++.+.+++|+||++|+|+++|||++++...++...+|+++..++||..+.+.|.
T Consensus 150 ~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (370)
T PRK06294 150 EHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLT 229 (370)
T ss_pred HcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HCCCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhh
Q 012112 290 SAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKD 369 (471)
Q Consensus 290 ~~Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~ 369 (471)
++||.|||+|||||||++|+||..||++.||+|||+||+|++++.||+|++++.+|++ .+++|..|+...+.+++++
T Consensus 230 ~~Gy~~yeis~fa~~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~~r~~n~~~l~~Y~~---~~~~~~~p~~~~~~l~~~~ 306 (370)
T PRK06294 230 SQGFTRYELASYAKPQAQSKHNTYYWTDRPFLGLGVSASQYLHGIRSKNLSRISHYLR---ALRKNLPTQESSEELPPNE 306 (370)
T ss_pred HcCCCeeeeeeeeCCCchhhhhhhhccCCCEEEEcCCcceecCCEEEEcCCCHHHHHH---HHHcCCCCcccceeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999998875 4567888877778899999
Q ss_pred HHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeee
Q 012112 370 LAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRL 449 (471)
Q Consensus 370 ~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 449 (471)
++.|.+|++||+.+||++++|.++ .+.+.++.++++||+..++ + +|+|
T Consensus 307 ~~~e~~~~~Lr~~~Gi~~~~~~~~-------~~~~~l~~~~~~gll~~~~-~------------------------~i~l 354 (370)
T PRK06294 307 RIKEALALRLRLCEGIPLADFPSE-------LTSELIMHPIIQELFTKND-Q------------------------ALSL 354 (370)
T ss_pred HHHHHHHHhhhccCCCCHHHHHHH-------HHHHHHHHHHHCCCEEEEC-C------------------------EEEE
Confidence 999999999999999999999775 2567899999999998644 2 4899
Q ss_pred cCchhhchHHHHHHHHH
Q 012112 450 SDPEGFLLSNELISHAF 466 (471)
Q Consensus 450 t~~~G~~~~n~i~~~~~ 466 (471)
| ++|++++|+|+.+|+
T Consensus 355 T-~~G~~~~~~i~~~~~ 370 (370)
T PRK06294 355 N-KKGRLFHDTIAEEIM 370 (370)
T ss_pred C-cchhhHHHHHHHHhC
Confidence 7 999999999999885
No 5
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.3e-84 Score=667.50 Aligned_cols=374 Identities=30% Similarity=0.522 Sum_probs=341.3
Q ss_pred CCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH
Q 012112 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP 130 (471)
Q Consensus 51 ~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~ 130 (471)
+.+++||||||||+++|.||+|++.... .....+|+++|++||+....... ...+++|||||||||+|++
T Consensus 2 ~~~~~lYiHIPFC~~kC~yC~f~~~~~~---------~~~~~~Y~~aL~~Ei~~~~~~~~-~~~i~tiy~GGGTPs~l~~ 71 (380)
T PRK09057 2 DGGFGLYVHWPFCLAKCPYCDFNSHVRH---------AIDQARFAAAFLRELATEAARTG-PRTLTSIFFGGGTPSLMQP 71 (380)
T ss_pred CCceEEEEEeCCcCCcCCCCCCcccCcC---------cCCHHHHHHHHHHHHHHHHHHcC-CCCcCeEEeCCCccccCCH
Confidence 3468999999999999999999876421 13457899999999997654432 4679999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL 210 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~ 210 (471)
+++++|++.|++.|++.+++|+|+|+||++++.+.++.|+++||||||||||||||++|+.|||.|+.+++.++++.+++
T Consensus 72 ~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~ 151 (380)
T PRK09057 72 ETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLARE 151 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 211 CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 211 ~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+ +.+||+|||+|+||||.++|.++++.+++++|+||++|+|+++|||++++.++.|++.+|++++..+||..+.+.|++
T Consensus 152 ~-~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 230 (380)
T PRK09057 152 I-FPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAA 230 (380)
T ss_pred h-CccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9 456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccC--Ce--EEEcCCChHHHHHHHHHHhcCCCcccccccCC
Q 012112 291 AGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLG--GL--RFSRPRRMKEFVDYVQNLEAGLVDCWGNNHID 366 (471)
Q Consensus 291 ~Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~--~~--r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~ 366 (471)
+||.+||+|||+|+|++|+||..||++.+|+|||+||+|+++ +. ++.|++++.+|+ ++++++..|+...+.++
T Consensus 231 ~G~~~ye~s~~a~~g~~~~hn~~yw~~~~~lG~G~gA~s~~~~~~~~~~~~n~~~~~~Y~---~~i~~~~~p~~~~~~l~ 307 (380)
T PRK09057 231 AGLPAYEISNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWL---ERVERNGHGIIEEERLD 307 (380)
T ss_pred cCCchhhhHHHcCCCchhhhHHHHhCCCCEEEEcCCccccccCCCceEEEecCCCHHHHH---HHHHcCCCCcceeeeCC
Confidence 999999999999999999999999999999999999999984 54 457788888776 45667888887778899
Q ss_pred HhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccce
Q 012112 367 AKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAY 446 (471)
Q Consensus 367 ~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 446 (471)
.++++.|.+|++||+.+|||++.|+++||.++. .+.++.|++.|++..++++ +
T Consensus 308 ~~e~~~e~~~~~Lr~~~gid~~~~~~~~g~~~~---~~~l~~l~~~gl~~~~~~~------------------------~ 360 (380)
T PRK09057 308 PEERADEFLLMGLRLREGIDLARYAALSGRPLD---PERLADLIEEGLIERDGGS------------------------R 360 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHCCCch---HHHHHHHHHCCCEEEcCCC------------------------E
Confidence 999999999999999999999999999999875 3689999999999864432 4
Q ss_pred eeecCchhhchHHHHHHHHH
Q 012112 447 FRLSDPEGFLLSNELISHAF 466 (471)
Q Consensus 447 ~~lt~~~G~~~~n~i~~~~~ 466 (471)
++|| ++|++++|.|+.+|+
T Consensus 361 ~~lT-~~G~~~~d~i~~~~~ 379 (380)
T PRK09057 361 LRAT-PAGRLVLDAVVADLA 379 (380)
T ss_pred EEEC-cchhHHHHHHHHHHh
Confidence 7896 999999999999987
No 6
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.4e-83 Score=673.91 Aligned_cols=380 Identities=25% Similarity=0.428 Sum_probs=349.9
Q ss_pred CCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCC-CCCCCCeeEEEEcCCCCCCC
Q 012112 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPG-HKTSPPLETVFFGGGTPSLV 128 (471)
Q Consensus 50 ~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~-~~~~~~v~~i~fGGGTps~l 128 (471)
+..+.+||||||||+++|.||+|++.. .....+.+|+++|++||+..... ......+++|||||||||+|
T Consensus 58 ~~~~~~lYiHIPFC~~~C~yC~f~~~~---------~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L 128 (449)
T PRK09058 58 RARKRLLYIHIPFCRTHCTFCGFFQNA---------WNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTAL 128 (449)
T ss_pred CCCceEEEEEeCCcCCcCCCCCCcCcC---------CchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccC
Confidence 345799999999999999999998653 12345788999999999976542 21235799999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
+++++.+|++.|++.|++..++|||+|+||+++|+++++.|+++|||||||||||||+++|+.+||.|+.+++.++++.+
T Consensus 129 ~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l 208 (449)
T PRK09058 129 SAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEEL 208 (449)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCC-CHHHHHHHHHHHHHH
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLP-TETQSANFYRMASSM 287 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p-~~~~~~~~~~~~~~~ 287 (471)
+++|+.+|++|||||+||||.++|+++++.+.+++|+||++|.|+++|||++++.+++|++++| ++++.++||..+.+.
T Consensus 209 ~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~ 288 (449)
T PRK09058 209 VARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEF 288 (449)
T ss_pred HhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999888999999999999999999999999999999999999999999999999999999888 999999999999999
Q ss_pred HHHCCCceeccccccCCCc-chhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCC
Q 012112 288 LSSAGYRHYEISSYGEDGY-ECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHID 366 (471)
Q Consensus 288 L~~~Gy~~yeis~fa~~g~-~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~ 366 (471)
|.++||.|||+|||||+|. +|+||..||++.+|+|||+||+|++++.+|+|++++++|.+ .+++|..|+...+.++
T Consensus 289 L~~~Gy~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~~~l~~Y~~---~i~~~~~p~~~~~~~~ 365 (449)
T PRK09058 289 LAKAGWRQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGYSYMNHRDLDTYHE---AIAAGQKPLMMMMRAS 365 (449)
T ss_pred HHHCCCeEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCEEEECCCCHHHHHH---HHHcCCCchhhcccCC
Confidence 9999999999999999996 59999999999999999999999999999999999998874 5667888887777899
Q ss_pred HhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccce
Q 012112 367 AKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAY 446 (471)
Q Consensus 367 ~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 446 (471)
+++++.+.++++||+ .|||++.|+ ||.++.+.+.+.++.|++.||++.++ + +
T Consensus 366 ~~~~~~~~i~~~l~~-~~l~~~~~~--~g~~~~~~~~~~l~~~~~~Gll~~~~-~------------------------~ 417 (449)
T PRK09058 366 PNAPLRAALKAGLER-GRLDLSELA--LGTPHADHLAPLLAQWQQAGLVELSS-D------------------------C 417 (449)
T ss_pred HHHHHHHHHHHHhhc-CCccHHHhh--cCCcHHHHHHHHHHHHHHCCCEEEEC-C------------------------E
Confidence 999999999999998 499999999 99999988999999999999998644 2 4
Q ss_pred eeecCchhhchHHHHHHHHHhccc
Q 012112 447 FRLSDPEGFLLSNELISHAFGVID 470 (471)
Q Consensus 447 ~~lt~~~G~~~~n~i~~~~~~~~~ 470 (471)
++|| ++|++++|.|+..|+..+.
T Consensus 418 l~lT-~~G~~~~~~i~~~~~~~l~ 440 (449)
T PRK09058 418 LRLT-LAGRFWAVNLTQGLIEILQ 440 (449)
T ss_pred EEEC-CCcccHHHHHHHHHHHHHH
Confidence 8997 9999999999999987653
No 7
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.5e-82 Score=651.36 Aligned_cols=372 Identities=32% Similarity=0.634 Sum_probs=344.4
Q ss_pred CCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHH
Q 012112 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR 131 (471)
Q Consensus 52 ~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~ 131 (471)
.+++||||||||+++|.||+|++... ......+|+++|++||+.... ...+++||||||||++++++
T Consensus 2 ~~~~lYiHiPfC~~~C~yC~~~~~~~---------~~~~~~~y~~~l~~Ei~~~~~----~~~~~~i~~gGGtps~l~~~ 68 (374)
T PRK05799 2 KEISLYIHIPFCKQKCLYCDFPSYSG---------KEDLMMEYIKALSKEIRNSTK----NKKIKSIFIGGGTPTYLSLE 68 (374)
T ss_pred CceEEEEEeCCccCCCCCCCCCcccC---------CcchHHHHHHHHHHHHHhhcC----CCceeEEEECCCcccCCCHH
Confidence 35799999999999999999987632 123567899999999975422 34589999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
.++.|++.+++ +.+..+++||+|+||+++|++.++.|+++|+|||||||||++|++|+.+||.|+.+++.++++.++++
T Consensus 69 ~l~~L~~~i~~-~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~ 147 (374)
T PRK05799 69 ALEILKETIKK-LNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL 147 (374)
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 99999999975 77777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 212 GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
||++|++|+|+|+||||.++|.++++.+.+++|+||++|.|+++|||++++++++|.+.+|+++...+||..+.+.|.++
T Consensus 148 g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 227 (374)
T PRK05799 148 GFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEK 227 (374)
T ss_pred CCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhhHH
Q 012112 292 GYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLA 371 (471)
Q Consensus 292 Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~~~ 371 (471)
||.|||+|||||||++|+||..||++.+|+|||+||+|++++.+|+|++++++|.+. +++|..|+...+.++.++++
T Consensus 228 Gy~~ye~~~fa~~~~~~~hn~~yw~~~~~~g~G~gA~s~~~~~~~~n~~~~~~y~~~---~~~~~~p~~~~~~l~~~~~~ 304 (374)
T PRK05799 228 GYHQYEISNFAKPGKECRHNLVYWDLEEYIGCGAGAHSYVNGKRYENISNIEKYIKE---INENNSAVEEIHKNSIKDNM 304 (374)
T ss_pred CCcEEeeeeeECCCcchhhHHHHhcCCCEEEEcCCccccCCCEEEecCCCHHHHHHH---HhcCCCccceeeeCCHhHHH
Confidence 999999999999999999999999999999999999999999999999999988754 56688887677889999999
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.+.+|++||+.+|||.++|+++||.++.+.+.+.++.++++||+..++ + +++||
T Consensus 305 ~~~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~------------------------~~~lT- 358 (374)
T PRK05799 305 EEFMFMGLRKIKGICIEDFKKRFGKNIYEVYGEVINKYIKLGLLIEKE-G------------------------RIYLS- 358 (374)
T ss_pred HHHHHHHHHhhCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEEC-C------------------------EEEEC-
Confidence 999999999999999999999999999888999999999999998643 2 47996
Q ss_pred chhhchHHHHHHHHH
Q 012112 452 PEGFLLSNELISHAF 466 (471)
Q Consensus 452 ~~G~~~~n~i~~~~~ 466 (471)
++|++++|.|+.+|+
T Consensus 359 ~~G~~~~~~i~~~~~ 373 (374)
T PRK05799 359 ERGIEVSNSIMSDFL 373 (374)
T ss_pred hhHHHHHHHHHHHHh
Confidence 999999999999986
No 8
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=3.7e-82 Score=651.01 Aligned_cols=372 Identities=31% Similarity=0.545 Sum_probs=341.1
Q ss_pred CeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCC-CCCCeeEEEEcCCCCCCCCHH
Q 012112 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK-TSPPLETVFFGGGTPSLVPPR 131 (471)
Q Consensus 53 ~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~-~~~~v~~i~fGGGTps~l~~~ 131 (471)
+++||||||||+++|.||+|++...+.. ......++|+++|.+||+....... ....+++|||||||||+++++
T Consensus 2 ~~~lYiHiPFC~~~C~yC~f~~~~~~~~-----~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~ 76 (375)
T PRK05628 2 PFGVYVHVPFCATRCGYCDFNTYTAAEL-----GGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAE 76 (375)
T ss_pred CeEEEEEeCCcCCcCCCCCCCccccccc-----ccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHH
Confidence 5799999999999999999987643210 0023468899999999997665432 246799999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
++.+|++.+++.+++.+++|||+|+||++++++.++.|+++||||||+||||+++++|+.++|.|+.+++.++++.++++
T Consensus 77 ~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~ 156 (375)
T PRK05628 77 GLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA 156 (375)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 212 GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
||.+|++|||+|+||||.++|.++++.+.+++|+||++|+|+++|||++++.+.+|+++.|+++...+||..+.+.|.++
T Consensus 157 g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 236 (375)
T PRK05628 157 GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAA 236 (375)
T ss_pred CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhhHH
Q 012112 292 GYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLA 371 (471)
Q Consensus 292 Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~~~ 371 (471)
||.+||+|||||||++|+||..||.+.||+|||+||+|++++.+|+|+.++++|++ .+++|..|+...+.+++++++
T Consensus 237 G~~~ye~s~fa~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~n~~~l~~Y~~---~v~~~~~p~~~~~~l~~~~~~ 313 (375)
T PRK05628 237 GFDWYEVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGGVRWWNVKHPAAYAA---RLAAGALPVAGREVLDAEDRH 313 (375)
T ss_pred CCCeeeeccccCCCcccccchhhcCCCCEEEEccCcccccCCEEEEcCCCHHHHHH---HHHcCCCCcceeeeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875 456788888777889999999
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.|.+|++||+..|+|+.+|.+++ .+.++.|+++|++..++ + +++||
T Consensus 314 ~e~l~~~lr~~~g~~~~~~~~~~--------~~~l~~l~~~gl~~~~~-~------------------------~~~lT- 359 (375)
T PRK05628 314 VERVMLGLRLREGLPLALLDAAE--------RARAARVVADGLLAAEG-G------------------------RLVLT- 359 (375)
T ss_pred HHHHHhccccccCCCHHHHHHHH--------HHHHHHHHHCCCEEEEC-C------------------------EEEEC-
Confidence 99999999999999999888753 57889999999998643 2 47997
Q ss_pred chhhchHHHHHHHHH
Q 012112 452 PEGFLLSNELISHAF 466 (471)
Q Consensus 452 ~~G~~~~n~i~~~~~ 466 (471)
++|++++|.|+++|+
T Consensus 360 ~~G~~~~~~i~~~~~ 374 (375)
T PRK05628 360 LRGRLLADAVVRDLL 374 (375)
T ss_pred hhhhHHHHHHHHHHh
Confidence 999999999999986
No 9
>PRK05660 HemN family oxidoreductase; Provisional
Probab=100.00 E-value=1.9e-81 Score=645.07 Aligned_cols=367 Identities=31% Similarity=0.573 Sum_probs=332.3
Q ss_pred CeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 53 ~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
+++||||||||+++|.||+|++.... ......+|+++|++||+...... .+.++++||||||||++|++++
T Consensus 6 ~~~lYiHiPFC~~~C~yC~f~~~~~~--------~~~~~~~Y~~~l~~Ei~~~~~~~-~~~~v~ti~~GGGtPs~l~~~~ 76 (378)
T PRK05660 6 PLSLYIHIPWCVQKCPYCDFNSHALK--------GEVPEDEYVDHLLADLDADLPLV-QGREVHSIFIGGGTPSLFSAEA 76 (378)
T ss_pred ceEEEEEeCCccCcCCCCCCeecCCC--------CcCCHHHHHHHHHHHHHHHhHhc-cCCceeEEEeCCCccccCCHHH
Confidence 57999999999999999999875321 12345779999999998643322 2467999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+.+|++.+++.|++..++|||+|+||++++.+.++.|+++|+|||||||||+++++|+.++|.|+.+++.++++.++++|
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G 156 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLG 156 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
|.+||+|||+|+||||.++|.++++.+.+++|+||++|+|+++|||+++++ ...+|++++.++||..+.+.|.++|
T Consensus 157 ~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~----~~~~~~~~~~~~~~~~~~~~L~~~G 232 (378)
T PRK05660 157 LRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSR----PPVLPDDDALWDIFEQGHQLLTAAG 232 (378)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCccccc----CCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999874 2236889999999999999999999
Q ss_pred CceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccC---C--eEEEcCCChHHHHHHHHHHhcCCCcccccccCCH
Q 012112 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLG---G--LRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDA 367 (471)
Q Consensus 293 y~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~---~--~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~ 367 (471)
|.|||++||||||++|+||..||++.||+|||+||+|+++ + .||+|++++.+|.+ + .+....+.++.
T Consensus 233 y~~yei~~fa~~~~~~~hn~~~w~~~~~lg~G~gA~s~~~~~~~~~~r~~n~~~~~~y~~-------~-~~~~~~~~l~~ 304 (378)
T PRK05660 233 YQQYETSAYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYMQ-------G-RYLDGQRDVEA 304 (378)
T ss_pred CcEeecccccCCChhHHHHHHHhcCCCEEEEcCCccccccCCCCceeeEeecCCHHHHHh-------c-CCCcccccCCh
Confidence 9999999999999999999999999999999999999985 3 59999999998863 2 23345677899
Q ss_pred hhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccccee
Q 012112 368 KDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYF 447 (471)
Q Consensus 368 ~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (471)
++++.|.+|++||+.+|||+++|+++||.++.+ +.+.++.+++.||+..++ + ++
T Consensus 305 ~~~~~e~~~~~Lr~~~G~~~~~~~~~~g~~~~~-~~~~l~~l~~~gl~~~~~-~------------------------~~ 358 (378)
T PRK05660 305 ADRPFEFFMNRFRLLEAAPRADFEAYTGLPESV-IRPQLDEALAQGYLTETA-D------------------------HW 358 (378)
T ss_pred hhHHHHHHHHhchhccCCCHHHHHHHHCCCHHH-HHHHHHHHHHCCCEEEeC-C------------------------EE
Confidence 999999999999999999999999999999866 678999999999998643 2 47
Q ss_pred eecCchhhchHHHHHHHHHh
Q 012112 448 RLSDPEGFLLSNELISHAFG 467 (471)
Q Consensus 448 ~lt~~~G~~~~n~i~~~~~~ 467 (471)
+|| ++|++++|+|++.|+.
T Consensus 359 ~lt-~~G~~~~d~i~~~~~~ 377 (378)
T PRK05660 359 QIT-EHGKLFLNDLLELFLA 377 (378)
T ss_pred EEC-cchhHHHHHHHHHHhc
Confidence 997 9999999999999975
No 10
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.5e-80 Score=636.99 Aligned_cols=375 Identities=35% Similarity=0.610 Sum_probs=348.2
Q ss_pred CeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 53 ~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
|.++|||||||+++|.||+|++... ......+|+++|++||+..... . ...+++||||||||+++++++
T Consensus 1 ~~~lYihiPfC~~~C~yC~~~~~~~---------~~~~~~~y~~~l~~Ei~~~~~~-~-~~~i~~i~~gGGtpt~l~~~~ 69 (377)
T PRK08599 1 PTSAYIHIPFCEHICYYCDFNKVFI---------KNQPVDEYLDALIKEMNTYAIR-P-FDKLKTIYIGGGTPTALSAEQ 69 (377)
T ss_pred CceEEEEeCCcCCCCCCCCCeeecc---------CccCHHHHHHHHHHHHHHhhhc-C-CCceeEEEeCCCCcccCCHHH
Confidence 5799999999999999999987532 1234688999999999765432 2 357999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+.++++.+++.+++...+|||+|+||++++.+.++.|+++|+|||||||||+++++|+.|+|.|+.+++.++++.++++|
T Consensus 70 l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g 149 (377)
T PRK08599 70 LERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAG 149 (377)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999988777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
+.+|++|+|+|+||||.++|.++++.+.+++++||++|+|+++|||++++++.+|+..+|+++...+||..+.+.|.++|
T Consensus 150 ~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 229 (377)
T PRK08599 150 FDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHG 229 (377)
T ss_pred CCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99899999999999999999999999999999999999999999999999998999989999999999999999999999
Q ss_pred CceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhhHHH
Q 012112 293 YRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLAM 372 (471)
Q Consensus 293 y~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~~~~ 372 (471)
|.|||++||+|||++|+||..||++.+|+|||+||+|++++.+|.|+.++.+|++ .+++|..|+...+.++.++++.
T Consensus 230 y~~~~~~~fa~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~~~~~~Y~~---~~~~~~~p~~~~~~l~~~~~~~ 306 (377)
T PRK08599 230 FHQYEISNFAKPGFESRHNLTYWNNEEYYGFGAGASGYVNGVRYQNIGPIKHYLK---AINEEGLPRLEEHVLTKKEQME 306 (377)
T ss_pred CcEeeeeeeeCCChHHHHHHHHhcCCcEEEEccCcccccCCEEEEcCCCHHHHHH---HHhcCCCccceeeeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988775 4567888886778899999999
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
+.+|++||+..|||.+.|+++||.++.+.+.+.++.|++.||+..++ + +++|| +
T Consensus 307 ~~~~~~Lr~~~gl~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~------------------------~~~lt-~ 360 (377)
T PRK08599 307 EEMFLGLRKKSGVSKARFEEKFGQSFEDVFGETIQELQEQGLLEEDD-D------------------------HVRLT-K 360 (377)
T ss_pred HHHHHhHHhhCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEEC-C------------------------EEEEC-c
Confidence 99999999999999999999999999999999999999999998643 2 47997 9
Q ss_pred hhhchHHHHHHHHHh
Q 012112 453 EGFLLSNELISHAFG 467 (471)
Q Consensus 453 ~G~~~~n~i~~~~~~ 467 (471)
+|++++|.|+..|+-
T Consensus 361 ~G~~~~~~i~~~~~~ 375 (377)
T PRK08599 361 KGKFLGNEVFEAFLL 375 (377)
T ss_pred cHhHHHHHHHHHHhh
Confidence 999999999999864
No 11
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.6e-80 Score=639.98 Aligned_cols=372 Identities=31% Similarity=0.536 Sum_probs=333.7
Q ss_pred CCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHH
Q 012112 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR 131 (471)
Q Consensus 52 ~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~ 131 (471)
++++||||||||+++|.||+|++..... ......++|+++|.+||+....... +..+++||||||||++|+++
T Consensus 18 ~~~~lYiHIPFC~~~C~yC~f~~~~~~~------~~~~~~~~Y~~~l~~ei~~~~~~~~-~~~i~siy~GGGTPs~L~~~ 90 (394)
T PRK08898 18 PPLSLYVHFPWCVRKCPYCDFNSHEWKD------GGAIPEAAYLDALRADLEQALPLVW-GRQVHTVFIGGGTPSLLSAA 90 (394)
T ss_pred CCeEEEEEeCCccCcCCCCCCcccccCC------CCccCHHHHHHHHHHHHHHHHHhcc-CCceeEEEECCCCcCCCCHH
Confidence 4689999999999999999998764221 1112457899999999996543221 35799999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
+|.+|++.|++.|++..+.|||+|+||++++.+.|+.|+++||||||||||||||++|+.|||.|+.+++.++++.+++.
T Consensus 91 ~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~ 170 (394)
T PRK08898 91 GLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH 170 (394)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 212 GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
+.+|++|||+|+||||.++|.++++.+.+++|+||++|+|+++|||++++... .+|+++..++||..+.+.|.++
T Consensus 171 -~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~----~~~~~~~~~~~~~~~~~~L~~~ 245 (394)
T PRK08898 171 -FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPP----ALPDDDASADMQDWIEARLAAA 245 (394)
T ss_pred -CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccC----CCCChHHHHHHHHHHHHHHHHc
Confidence 55799999999999999999999999999999999999999999999997532 4688999999999999999999
Q ss_pred CCceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccC----CeEEEcCCChHHHHHHHHHHhcCCCcccccccCCH
Q 012112 292 GYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLG----GLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDA 367 (471)
Q Consensus 292 Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~----~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~ 367 (471)
||.|||++||||||++|+||..||+..||+|||+||+|+++ ..||.|++++++|++.+ +.+.+ +...+.++.
T Consensus 246 Gy~~ye~~~fa~~~~~~~hn~~~w~~~~~lg~G~gA~s~l~~~~~~~r~~n~~~l~~Y~~~i---~~~~~-~~~~~~ls~ 321 (394)
T PRK08898 246 GYAHYEVSAYAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLSFPDRILRQMRYKHPATYLEQA---KAGTA-VQEEREVGA 321 (394)
T ss_pred CCchhccccccCCCccchhHHHHhCCCCEEEECCCeeeeecCCCceEEeecCCCHHHHHHHH---HcCCC-ccceeecCH
Confidence 99999999999999999999999999999999999999987 36889999999887654 45654 445567999
Q ss_pred hhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccccee
Q 012112 368 KDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYF 447 (471)
Q Consensus 368 ~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (471)
++++.+.+|++||+.+|||++.|+++||.++.. +.+.++.|++.||+..++ + ++
T Consensus 322 ~~~~~~~~~l~LR~~~Gld~~~f~~~~g~~~~~-~~~~l~~l~~~gll~~~~-~------------------------~~ 375 (394)
T PRK08898 322 RDLPFEFMLNALRLTDGVPAHLFQERTGLPLAA-IEPQLAAAEQRGLLERDH-T------------------------RI 375 (394)
T ss_pred hhHHHHHHHHHHHHhCCcCHHHHHHHHCCCHHH-HHHHHHHHHHCCCEEEEC-C------------------------EE
Confidence 999999999999999999999999999998754 678999999999998643 2 47
Q ss_pred eecCchhhchHHHHHHHHH
Q 012112 448 RLSDPEGFLLSNELISHAF 466 (471)
Q Consensus 448 ~lt~~~G~~~~n~i~~~~~ 466 (471)
+|| ++|++++|+|+.+|+
T Consensus 376 ~LT-~~G~~~~d~i~~~~~ 393 (394)
T PRK08898 376 RPT-PLGQRFLNDLQELFL 393 (394)
T ss_pred EEC-hhHhHHHHHHHHHHh
Confidence 997 999999999999986
No 12
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=4.5e-80 Score=629.07 Aligned_cols=348 Identities=32% Similarity=0.580 Sum_probs=312.5
Q ss_pred EEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 55 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
+||||||||+++|.||+|++... ......+|+++|++||+...+.. ...++++|||||||||+++++++.
T Consensus 2 ~lYiHiPFC~~~C~yC~f~~~~~---------~~~~~~~y~~~L~~Ei~~~~~~~-~~~~v~~iyfGGGTPs~l~~~~l~ 71 (350)
T PRK08446 2 LLYIHIPFCESKCGYCAFNSYEN---------KHDLKKEYMQALCLDLKFELEQF-TDEKIESVFIGGGTPSTVSAKFYE 71 (350)
T ss_pred eEEEEeCCccCcCCCCCCcCcCC---------CcccHHHHHHHHHHHHHHHHhhc-cCCceeEEEECCCccccCCHHHHH
Confidence 89999999999999999987631 12356889999999999654333 245799999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+|++.|++. +..++|||+|+||+++++++++.|+++||||||||||||++++|+.+||.|+.+++.++++.++++||.
T Consensus 72 ~ll~~i~~~--~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 72 PIFEIISPY--LSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HHHHHHHHh--cCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 999999987 566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+||+|||+|+||||.++|.++++.+.+++|+||++|.|+++|||++++...++ ++++ +||..+.+.|.++||.
T Consensus 150 ~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~----~~~~---~~~~~~~~~l~~~Gy~ 222 (350)
T PRK08446 150 NISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKK----KDDE---NLAKFFIEQLEELGFK 222 (350)
T ss_pred EEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcC----CCHH---HHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999876554 3332 4999999999999999
Q ss_pred eeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhhHHHHH
Q 012112 295 HYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLAMDV 374 (471)
Q Consensus 295 ~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~~~~e~ 374 (471)
|||+||||| |++|+||..||++.||+|||+||+|++++.||+|++++++|++. ++....+.+++++++.|.
T Consensus 223 ~yeis~fa~-~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~n~~~~~~y~~~--------~~~~~~~~l~~~~~~~e~ 293 (350)
T PRK08446 223 QYEISNFGK-NYQCKHNLGYWQGKDYLGCGAGAVGFVANKRFYPKKNLENYIKN--------PLKREIETLSEEDLRLEK 293 (350)
T ss_pred EEEeehhhC-cchhhhHHHHhCCCCEEEEcCCcccccCCeEEEecCCHHHHHhc--------hhhcccccCCHHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999998752 112234569999999999
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
+|++||+.+|||++.|.++ +.+.++.++++||+..++ + +|| ++|
T Consensus 294 ~~~~Lr~~~g~~~~~~~~~--------~~~~l~~l~~~gl~~~~~-~--------------------------~l~-~~g 337 (350)
T PRK08446 294 LFLGLRSIVGVDLSILNQK--------EEKKVKILIEENKLFIKN-N--------------------------RLY-NKD 337 (350)
T ss_pred HHHHHHhhCCcCHHHHHHH--------HHHHHHHHHHCCCEEeeC-C--------------------------EEc-ccc
Confidence 9999999999999999865 467899999999998643 2 465 899
Q ss_pred hchHHHHHHHHH
Q 012112 455 FLLSNELISHAF 466 (471)
Q Consensus 455 ~~~~n~i~~~~~ 466 (471)
++++|+|+..|+
T Consensus 338 ~~~~d~i~~~~~ 349 (350)
T PRK08446 338 FFLADEIALFLL 349 (350)
T ss_pred hhhHHHHHHHhh
Confidence 999999999875
No 13
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=100.00 E-value=7.9e-80 Score=630.26 Aligned_cols=348 Identities=33% Similarity=0.570 Sum_probs=322.0
Q ss_pred eEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 54 TSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 54 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
++||||||||+.+|.||+|++... ......+|++++++||+....... ...+++|||||||||+++++++
T Consensus 1 l~lYiHiPFC~~~C~yC~f~~~~~---------~~~~~~~y~~~l~~Ei~~~~~~~~-~~~v~~i~~GGGtPs~l~~~~l 70 (360)
T TIGR00539 1 MSLYIHIPFCENKCGYCDFNSYEN---------KSGPKEEYTQALCQDLKHALSQTD-QEPLESIFIGGGTPNTLSVEAF 70 (360)
T ss_pred CEEEEEeCCCcCcCCCCCCcccCc---------CccCHHHHHHHHHHHHHHHHHhcC-CCcccEEEeCCCchhcCCHHHH
Confidence 489999999999999999987632 123467899999999986543332 3569999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.+|++.|++.+++..++|+|+|+||+++|++.++.|+++||||||+||||+++++|+.+||.|+.+++.++++.++++||
T Consensus 71 ~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~ 150 (360)
T TIGR00539 71 ERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGI 150 (360)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+|++|+|+|+||||.++|.++++.+.+++|+||++|.|+++|||++++...+ .|++++.++||..+.+.|+++||
T Consensus 151 ~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~----~~~~~~~~~~~~~~~~~L~~~Gy 226 (360)
T TIGR00539 151 ENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKK----LPDDDSCAHFDEVVREILEGFGF 226 (360)
T ss_pred CeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhc----CcCHHHHHHHHHHHHHHHHHcCC
Confidence 98999999999999999999999999999999999999999999999986543 58899999999999999999999
Q ss_pred ceeccccccCCCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhhHHHH
Q 012112 294 RHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKDLAMD 373 (471)
Q Consensus 294 ~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~~~~e 373 (471)
.|||+|||||||++|+||..||.+.||+|||+||+|++++.||+|++++++|++. ++.+..|+...+.++.++++.|
T Consensus 227 ~~yei~~fa~~~~~~~hn~~yw~~~~~lg~G~~A~s~~~~~~~~n~~~~~~Y~~~---~~~~~~~~~~~~~l~~~~~~~e 303 (360)
T TIGR00539 227 KQYEVSNYAKAGYQVKHNLAYWGAKDYLGCGAGAHGCVANERFFAKKLIKNYIKD---PLQRGVETLNEKNVPKQDKRLE 303 (360)
T ss_pred ceeehhhhcCCCHHHHHHHHhcCCCCEEEEcCCccccCCCeEEEecCCHHHHHHH---HHcCCCCccccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988754 5567777766778999999999
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
.+|++||+.+|||++.|+++||.++.+.+...++.++++|++...
T Consensus 304 ~~~~~Lr~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 348 (360)
T TIGR00539 304 KLFLGLRCVLGVEKSFFDENKGLSQVKFLIEENKAFIKNNRLINS 348 (360)
T ss_pred HHHHHHHhhCCcCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEe
Confidence 999999999999999999999999999999999999999999854
No 14
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.9e-79 Score=623.32 Aligned_cols=349 Identities=23% Similarity=0.415 Sum_probs=312.6
Q ss_pred CCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH
Q 012112 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP 130 (471)
Q Consensus 51 ~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~ 130 (471)
....+||||||||+++|.||+|++..... .....+.+|++.+.+|++... ...+++|||||||||+|++
T Consensus 4 ~~~~~lYiHiPFC~~kC~yC~f~~~~~~~------~~~~~~~~~~~~l~~ei~~~~-----~~~~~tiy~GGGTPs~L~~ 72 (353)
T PRK05904 4 KKTKHLYIHIPFCQYICTFCDFKRILKTP------QTKKIFKDFLKNIKMHIKNFK-----IKQFKTIYLGGGTPNCLND 72 (353)
T ss_pred CCeeEEEEEeCCccCcCCCCCCeeccCCc------ccHHHHHHHHHHHHHHHHHhc-----CCCeEEEEECCCccccCCH
Confidence 35689999999999999999998763110 123456777888887776542 3469999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL 210 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~ 210 (471)
+++++|++.|++.+ .+++|||+|+||++++++.++.|+++|+||||+||||++|++|+.|||.|+.+++.++++.+++
T Consensus 73 ~~l~~ll~~i~~~~--~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~ 150 (353)
T PRK05904 73 QLLDILLSTIKPYV--DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHK 150 (353)
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999986 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 211 CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 211 ~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+||.+|++|+|+|+||||.++|+++++.+.+++|+||++|+|+++|||++++.. . .++++...+||..+.+.|++
T Consensus 151 ~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~--~---~~~~~~~~~~~~~~~~~L~~ 225 (353)
T PRK05904 151 NGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYH--Y---TIDEDKEAEQLNYIKAKFNK 225 (353)
T ss_pred cCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcC--C---CCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998762 1 36788899999999999999
Q ss_pred CCCceeccccccC-CCcchhhhhhhhcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccCCHhh
Q 012112 291 AGYRHYEISSYGE-DGYECKHNLTYWKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHIDAKD 369 (471)
Q Consensus 291 ~Gy~~yeis~fa~-~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l~~~~ 369 (471)
+||.||||||||+ +|++|+||..||++.||+|||+||+|++++.||.|+.++.+|.. ..+.++.++
T Consensus 226 ~Gy~~yeisnfa~~~~~~~~hn~~yw~~~~ylg~G~gA~s~~~~~r~~n~~~~~~y~~-------------~~~~l~~~e 292 (353)
T PRK05904 226 LNYKRYEVSNWTNNFKYISKHNLAYWRTKDWAAIGWGAHGFENNIEYFFDGSIQNWIL-------------IKKVLTDHE 292 (353)
T ss_pred cCCcEEechhhcCCCCccccchHhHhCCCCEEEEcCCcCcccCCeEEEeCCCHHHHhh-------------cCcCCCHHH
Confidence 9999999999999 89999999999999999999999999999999999999998862 234589999
Q ss_pred HHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeee
Q 012112 370 LAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRL 449 (471)
Q Consensus 370 ~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 449 (471)
++.|.+|++||+.+|||++.|. |.++...+.+.+++ +++..+ ++++|
T Consensus 293 ~~~e~~~l~Lr~~~Gi~~~~~~---~~~~~~~~~~~~~~-----~l~~~~-------------------------~~~~~ 339 (353)
T PRK05904 293 LYQQILIMGLRLKDGLDLNKEI---NKEAYLYFKNKLKH-----ISINKN-------------------------NHLRA 339 (353)
T ss_pred HHHHHHHHHHHhhCCccHHHhc---CCCHHHHHHHHHHH-----HHhhcC-------------------------CEEEE
Confidence 9999999999999999999998 99999888888887 444322 14899
Q ss_pred cCchhhchHHHHHHHHH
Q 012112 450 SDPEGFLLSNELISHAF 466 (471)
Q Consensus 450 t~~~G~~~~n~i~~~~~ 466 (471)
| |++++|.|+++||
T Consensus 340 t---g~~~~~~~~~~~~ 353 (353)
T PRK05904 340 D---NIDLLNLSIIDIF 353 (353)
T ss_pred E---cHhHHHHHHHHhC
Confidence 4 9999999999986
No 15
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=4.2e-76 Score=615.03 Aligned_cols=371 Identities=26% Similarity=0.443 Sum_probs=330.5
Q ss_pred CCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 50 ~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
..++++||||||||+++|.||+|+.... .......+|+++|++||+...... ....+.+|||||||||+++
T Consensus 36 ~~~~~~lYvHIPFC~~~C~yC~~~~~~~--------~~~~~~~~y~~~L~~Ei~~~~~~~-~~~~i~~i~~GGGTPs~l~ 106 (430)
T PRK08208 36 YEDALSLYIHIPFCEMRCGFCNLFTRTG--------ADAEFIDSYLDALIRQAEQVAEAL-APARFASFAVGGGTPTLLN 106 (430)
T ss_pred CCCceEEEEEeCCccCcCCCCCCccccC--------CccchHHHHHHHHHHHHHHHHHHc-CCCceeEEEEcCCccccCC
Confidence 3567899999999999999999987532 112356789999999999765433 2456899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC-CcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSL-DAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~-~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
++++.+|++.|++.+++.. ++|+|+|+||++++++.++.|+++||+||||||||+++++|+.++|.|+.+++.++++.+
T Consensus 107 ~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l 186 (430)
T PRK08208 107 AAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWI 186 (430)
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999998766 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
+++|+.+|++|||+|+||||.++|+++++.+.+++|+||++|+|+++|||++++.. .++++...+||..+.+.|
T Consensus 187 ~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~------~~~~~~~~~m~~~~~~~L 260 (430)
T PRK08208 187 RAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRA------RAWDDQRLSLYRLARDLL 260 (430)
T ss_pred HHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhc------CCCHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999999999998753 357789999999999999
Q ss_pred HHCCCceeccccccCCCcchhhhhhhh-cCCCEEEEccCcccccCCeEEEc--------CCC-hHHHHHHHHHHhcCCCc
Q 012112 289 SSAGYRHYEISSYGEDGYECKHNLTYW-KNKPFYGFGLGSASYLGGLRFSR--------PRR-MKEFVDYVQNLEAGLVD 358 (471)
Q Consensus 289 ~~~Gy~~yeis~fa~~g~~~~hn~~yw-~~~~ylG~G~gA~s~~~~~r~~n--------~~~-~~~y~~~~~~~~~g~~~ 358 (471)
.++||.|||++||||+|.+|+||..|| ++.||+|||+||+|++++.+|.| .++ +.+|+ +. .+..|
T Consensus 261 ~~~Gy~~yei~~far~~~~~~~~~~~~~~~~~~lG~G~gA~s~~~~~~~~~~~~~~~~~~~~~~~~Y~---~~--~~~~~ 335 (430)
T PRK08208 261 LEAGYTQTSMRMFRRNDAPDKGAPAYSCQTDGMLGLGCGARSYTGNLHYSSPYAVNQQTIRSIIDDYI---AT--PDFTV 335 (430)
T ss_pred HHcCCeEEeecceecCCcccCCCCccccCCCCEEEecCCeeecCCCCccccchhcccccccccHHHHH---Hh--cCCCC
Confidence 999999999999999999999999995 88999999999999999876643 332 55555 33 34455
Q ss_pred ccccccCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhh
Q 012112 359 CWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDET 438 (471)
Q Consensus 359 ~~~~~~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~ 438 (471)
+...+.++.++.+.+.+|++||+.+|||++.|+++||.++.+ +.+.++.|++.||+..++ +
T Consensus 336 ~~~~~~l~~~~~~~~~~~~~Lr~~~gl~~~~~~~~~g~~~~~-~~~~l~~l~~~gll~~~~-~----------------- 396 (430)
T PRK08208 336 AEHGYLLSEDEMKRRFIIKSLLQAQGLDLADYRQRFGSDPLR-DFPELELLIDRGWLEQNG-G----------------- 396 (430)
T ss_pred ceeeeeCCHHHHHHHHHHHHHHHhCCcCHHHHHHHHCCCHHH-HHHHHHHHHHCCCEEEEC-C-----------------
Confidence 555577999999999999999999999999999999999877 677999999999998754 2
Q ss_pred hcccccceeeecCchhhchHHHHHHHHHh
Q 012112 439 KIGNRLAYFRLSDPEGFLLSNELISHAFG 467 (471)
Q Consensus 439 ~~~~~~~~~~lt~~~G~~~~n~i~~~~~~ 467 (471)
+++|| ++|++++|.|++.|+.
T Consensus 397 -------~l~lT-~~G~~~~d~i~~~~~~ 417 (430)
T PRK08208 397 -------RLRLT-EEGLALSDAIGPVFIS 417 (430)
T ss_pred -------EEEEC-cchhhHHHHHHHHHcC
Confidence 47997 9999999999999974
No 16
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=9.1e-76 Score=616.31 Aligned_cols=380 Identities=25% Similarity=0.394 Sum_probs=338.9
Q ss_pred CCCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC
Q 012112 49 PQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV 128 (471)
Q Consensus 49 ~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l 128 (471)
++..+++||||||||+++|.||+|++.... ......+|+++|++||+...........+.+||||||||+++
T Consensus 46 ~~~~~~~LYvHIPfC~~~C~yC~~~~~~~~--------~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l 117 (453)
T PRK13347 46 GPEEPVSLYLHVPFCRSLCWFCGCNTIITQ--------RDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL 117 (453)
T ss_pred cCCCceEEEEEeCCccccCCCCCCcCcCcc--------ccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC
Confidence 456789999999999999999999865321 234567899999999997665443345799999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
+++++.+|++.|++.|++..++||++|+||+++|++.++.|+++||||||||||||++++|+.++|.|+.+++.++++.+
T Consensus 118 ~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~l 197 (453)
T PRK13347 118 NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELL 197 (453)
T ss_pred CHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
+++||.+|++|||+|+||||.++|.++++.+.+++|+||++|.|+..|++...+. ..+...+|++++..+||..+.+.|
T Consensus 198 r~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~-~~~~~~lp~~~~~~~~~~~~~~~L 276 (453)
T PRK13347 198 RAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQR-LIDEAALPDAEERLRQARAVADRL 276 (453)
T ss_pred HhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHh-cCCccCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986554332221 125667899999999999999999
Q ss_pred HHCCCceeccccccCCCcc----------hhhhhhhhc--CCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCC
Q 012112 289 SSAGYRHYEISSYGEDGYE----------CKHNLTYWK--NKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGL 356 (471)
Q Consensus 289 ~~~Gy~~yeis~fa~~g~~----------~~hn~~yw~--~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~ 356 (471)
.++||.+|+++|||||+++ |+||..||. +.+|+|||+||+|++++.+++|+.++++|.+ ++++|.
T Consensus 277 ~~~Gy~~~~~~~far~~~~~~~a~~~g~l~r~~~~Y~~~~~~~~lGlG~gA~s~~~~~~~~N~~~l~~Y~~---~i~~g~ 353 (453)
T PRK13347 277 LAAGYVPIGLDHFALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGYVQNISSLKAYYR---AIDAGR 353 (453)
T ss_pred HHCCCEEEeccceeCCCchhhHHHhcCcccccccccCCCCCCcEEEECcCceeCCCCceEECCCCHHHHHH---HHHCCC
Confidence 9999999999999999998 999999994 6899999999999999999999999998865 566799
Q ss_pred CcccccccCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHH--HHHHHHHHHHCCCEEEecCcccchhhhhhhhhh
Q 012112 357 VDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHT--LCKAYKPYIESGHVICLDEWRRAMNIEEFNSLL 434 (471)
Q Consensus 357 ~~~~~~~~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~--~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~ 434 (471)
+|+...+.++.++++.+.+|++||+..|||.+.|+++||.++... ..+.++.|++.||++.++ +
T Consensus 354 ~p~~~~~~l~~~~~~~~~~~~~L~~~~~ld~~~~~~~~g~~~~~~~~~~~~l~~l~~~gl~~~~~-~------------- 419 (453)
T PRK13347 354 LPIERGYALSDDDRLRRAIIETLMCNFPVDLAAIAARHGFFARYFLDELARLEPLAADGLVTIDG-G------------- 419 (453)
T ss_pred CCeeeeecCCHHHHHHHHHHHHHHhhCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEC-C-------------
Confidence 998777889999999999999999999999999999999986432 246899999999998643 2
Q ss_pred hhhhhcccccceeeecCchhhchHHHHHHHHH
Q 012112 435 LDETKIGNRLAYFRLSDPEGFLLSNELISHAF 466 (471)
Q Consensus 435 ~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~ 466 (471)
+++|| ++|++++|.|+..|=
T Consensus 420 -----------~~~lT-~~G~~~~~~i~~~fd 439 (453)
T PRK13347 420 -----------GIRVT-PEGRPLIRAVAAAFD 439 (453)
T ss_pred -----------EEEEC-cchhHHHHHHHHHHh
Confidence 47997 999999999998773
No 17
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.1e-74 Score=608.30 Aligned_cols=384 Identities=23% Similarity=0.414 Sum_probs=340.1
Q ss_pred CCCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC
Q 012112 49 PQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV 128 (471)
Q Consensus 49 ~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l 128 (471)
.+..+++||||||||+++|.||+|++...+ ......+|+++|++||+...+.+.....+.+||||||||+++
T Consensus 45 ~~~~~~~LYvHIPFC~~~C~yC~~~~~~~~--------~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l 116 (453)
T PRK09249 45 YPERPLSLYVHIPFCRSLCYYCGCNKIITR--------DHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFL 116 (453)
T ss_pred CCCCceEEEEEeCCccccCCCCCCcccCCC--------CcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccC
Confidence 345678999999999999999999865321 223567899999999997655432245799999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
+++++.+|++.+++.|++..++|+++|+||+++|++.++.|+++|+|||||||||+++++|+.++|.|+.+++.++++.+
T Consensus 117 ~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l 196 (453)
T PRK09249 117 SPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAA 196 (453)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
+++||.+|++|+|+|+||||.++|.++++.+.+++|+||++|.|++.|++..... ..++..+|++++..+||..+.+.|
T Consensus 197 ~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L 275 (453)
T PRK09249 197 RELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQR-KIDEADLPSPEEKLAILQQTIETL 275 (453)
T ss_pred HHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhc-CCCcccCCCHHHHHHHHHHHHHHH
Confidence 9999988999999999999999999999999999999999999996665432211 123456789999999999999999
Q ss_pred HHCCCceeccccccCCCcc---hhhhhhhhc---------CCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCC
Q 012112 289 SSAGYRHYEISSYGEDGYE---CKHNLTYWK---------NKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGL 356 (471)
Q Consensus 289 ~~~Gy~~yeis~fa~~g~~---~~hn~~yw~---------~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~ 356 (471)
.++||.|||++||+|+|++ |+||..||+ +.||+|||+||+|++++.+|.|++++.+|++ .+++|.
T Consensus 276 ~~~Gy~~ye~s~far~~~~~~~~~~n~~~~~~~~~y~~~~~~~~iglG~gA~s~~~~~~~~n~~~l~~Y~~---~i~~~~ 352 (453)
T PRK09249 276 TEAGYQYIGMDHFALPDDELAIAQREGTLHRNFQGYTTDGDCDLIGLGVSAISRIGDGYAQNEKDLKAYYA---AVDAGR 352 (453)
T ss_pred HHCCCEEEeccceeCCCchHHHHHHhCccccccceeccCCCCeEEEECcCcccCCCCeeeECCCCHHHHHH---HHHCCC
Confidence 9999999999999999986 999976665 3699999999999999999999999998875 456788
Q ss_pred CcccccccCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHH---HHHHHHCCCEEEecCcccchhhhhhhhh
Q 012112 357 VDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKA---YKPYIESGHVICLDEWRRAMNIEEFNSL 433 (471)
Q Consensus 357 ~~~~~~~~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~---~~~~~~~gll~~~~~~~~~l~~~~~~~~ 433 (471)
+|+...+.++.++++.+.+|++||+..|||++.|+++||.++.+.+.+. ++.|++.||+..++ +
T Consensus 353 ~p~~~~~~ls~~~~~~~~~~~~Lr~~~gl~~~~~~~~fg~~~~~~~~~~~~~l~~l~~~gll~~~~-~------------ 419 (453)
T PRK09249 353 LPTARGHALTADDRLRRDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEELERLAPLEADGLVELDE-N------------ 419 (453)
T ss_pred CCeeecccCCHHHHHHHHHHHHHhhcCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEC-C------------
Confidence 8887777899999999999999999999999999999999988877644 68999999998654 2
Q ss_pred hhhhhhcccccceeeecCchhhchHHHHHHHHHhccc
Q 012112 434 LLDETKIGNRLAYFRLSDPEGFLLSNELISHAFGVID 470 (471)
Q Consensus 434 ~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~~~~~ 470 (471)
+++|| ++|++++|.|+..|..+++
T Consensus 420 ------------~~~lT-~~G~~~~d~i~~~f~~~~~ 443 (453)
T PRK09249 420 ------------GITVT-PKGRLLVRNIAMAFDAYLR 443 (453)
T ss_pred ------------EEEEC-ccchHHHHHHHHHHHHHhc
Confidence 47997 9999999999999987665
No 18
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=100.00 E-value=5.3e-74 Score=603.88 Aligned_cols=380 Identities=23% Similarity=0.414 Sum_probs=340.1
Q ss_pred CCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 50 ~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
+..+++||||||||+++|.||+|++...+ ......+|+++|++||+...........+++||||||||++++
T Consensus 46 ~~~~~~lYiHiPFC~~~C~yC~~~~~~~~--------~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~ 117 (455)
T TIGR00538 46 PKTPLSLYVHIPFCHKACYFCGCNVIITR--------QKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS 117 (455)
T ss_pred CCCceEEEEEeCCccCcCCCCCCCccCCC--------CcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC
Confidence 45668999999999999999999876421 1235678999999999976544322357999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++++.+|++.+++.+++..++++++|+||++++++.++.|+++|++||||||||+++++|+.++|.|+.+++.++++.++
T Consensus 118 ~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~ 197 (455)
T TIGR00538 118 PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAR 197 (455)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCC-hhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 210 LCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT-KFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 210 ~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT-~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
++|+.+|++|+|+|+||||.++|.++++.+.+++|+||++|.|++.|++ +..+. .+...+|++++..+||..+.+.|
T Consensus 198 ~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~L 275 (455)
T TIGR00538 198 EAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRK--IPEAALPSAEEKLDILQETIAFL 275 (455)
T ss_pred hcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhc--ccccCCCCHHHHHHHHHHHHHHH
Confidence 9999889999999999999999999999999999999999999998875 33322 34556789999999999999999
Q ss_pred HHCCCceeccccccCCCcch----------hhhhhhhc--CCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCC
Q 012112 289 SSAGYRHYEISSYGEDGYEC----------KHNLTYWK--NKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGL 356 (471)
Q Consensus 289 ~~~Gy~~yeis~fa~~g~~~----------~hn~~yw~--~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~ 356 (471)
.++||.+||++||||||++| +||..||. +.+|+|||+||+|++++.+|+|+.++.+|++ .+++|.
T Consensus 276 ~~~Gy~~~~~~~fa~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~lG~G~gA~s~~~~~~~~n~~~~~~Y~~---~~~~~~ 352 (455)
T TIGR00538 276 TEAGYQFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTQKDTDLLGFGVTSISMLGDCYAQNQKTLKQYYK---AVDEGG 352 (455)
T ss_pred HHCCCEEEeccceeCCChHHHHHHhhCcceeccccccCCCCCcEEEeCcceeeCCCCeeEECCCCHHHHHH---HHHCCC
Confidence 99999999999999999986 67789999 7799999999999999999999999998875 456788
Q ss_pred CcccccccCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHH---HHHHHHCCCEEEecCcccchhhhhhhhh
Q 012112 357 VDCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKA---YKPYIESGHVICLDEWRRAMNIEEFNSL 433 (471)
Q Consensus 357 ~~~~~~~~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~---~~~~~~~gll~~~~~~~~~l~~~~~~~~ 433 (471)
+|+...+.++.++++.+.+|++||+..|||++.|+++||.++.+.+... +++|++.||+..++ +
T Consensus 353 ~pv~~~~~ls~~~~~~~~~~~~l~~~~gl~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~gll~~~~-~------------ 419 (455)
T TIGR00538 353 NPVERGIALSQDDCIRREVIKSLMCNFKLDYSKIEEKFDLDFADYFAKELELLKPLEEDGLLDVDE-K------------ 419 (455)
T ss_pred CCeeecccCCHHHHHHHHHHHHHHhcCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCEEEEC-C------------
Confidence 8887778899999999999999999999999999999999998877754 67889999998644 2
Q ss_pred hhhhhhcccccceeeecCchhhchHHHHHHHHHhc
Q 012112 434 LLDETKIGNRLAYFRLSDPEGFLLSNELISHAFGV 468 (471)
Q Consensus 434 ~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~~~ 468 (471)
+++|| ++|++++|.|+..|-..
T Consensus 420 ------------~~~lT-~~G~~~~~~i~~~f~~~ 441 (455)
T TIGR00538 420 ------------GIEVT-PKGRLLIRNIAMVFDTY 441 (455)
T ss_pred ------------EEEEC-cCChHHHHHHHHHHHHH
Confidence 58997 99999999999988654
No 19
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=7.7e-74 Score=596.00 Aligned_cols=366 Identities=22% Similarity=0.387 Sum_probs=323.7
Q ss_pred CCCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC
Q 012112 49 PQLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV 128 (471)
Q Consensus 49 ~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l 128 (471)
....+++||||||||+++|.||+|++... ......+|+++|++||+..... +..+++|||||||||++
T Consensus 48 ~~~~~~~LYvHIPFC~~~C~yC~f~~~~~---------~~~~~~~Y~~~L~~Ei~~~~~~---~~~~~siy~GGGTPs~l 115 (433)
T PRK08629 48 VEGKKYMLYAHVPFCHTLCPYCSFHRFYF---------KEDKARAYFISLRKEMEMVKEL---GYDFESMYVGGGTTTIL 115 (433)
T ss_pred CCCCcEEEEEEeCCccCcCCCCCCcCcCC---------CcchHHHHHHHHHHHHHHHHhc---CCceEEEEECCCccccC
Confidence 34677899999999999999999987532 1234678999999999976543 35699999999999997
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
++++.++++.+++.|++ .|||+|+||++++++.++.|+++ |||||||||||||++|+.|||.|+..+..++++.+
T Consensus 116 -~~~L~~ll~~i~~~f~i---~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l 190 (433)
T PRK08629 116 -EDELAKTLELAKKLFSI---KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKI 190 (433)
T ss_pred -HHHHHHHHHHHHHhCCC---ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHH
Confidence 78999999999999865 49999999999999999999999 99999999999999999999999876665555555
Q ss_pred HHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 209 KLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 209 ~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
+++ .+.++++|||+|+||||.++|.++++.+.+++|+||++|+|+++|+|+.. .+++..+|+++..++||..+.+
T Consensus 191 ~~~~~~~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~---~~~~~~~p~~d~~~~~~~~~~~ 267 (433)
T PRK08629 191 MKAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS---VKGSLGASQKDNERQYYQIINE 267 (433)
T ss_pred HHHhccCCeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh---hcCCCCCcCHHHHHHHHHHHHH
Confidence 544 26789999999999999999999999999999999999999999999743 3466778899999999999999
Q ss_pred HHHHCCCceeccccccCCCcchhhhhhh-hcCCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCCcccccccC
Q 012112 287 MLSSAGYRHYEISSYGEDGYECKHNLTY-WKNKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLVDCWGNNHI 365 (471)
Q Consensus 287 ~L~~~Gy~~yeis~fa~~g~~~~hn~~y-w~~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~~~~~~~~l 365 (471)
.|. ||.||++++|++++. .||..| |++.||+|||+||+|++++.+|.|+.++++|.+ .+++|..|+...+.+
T Consensus 268 ~l~--Gy~~~s~~~f~~~~~--~~~~~y~~~~~~ylGlG~gA~s~~~~~~~~N~~~l~~Y~~---~i~~g~~pv~~~~~l 340 (433)
T PRK08629 268 LFG--QYNQLSAWAFSKKND--EGFDEYVIDYDEYLGVGSGSFSFLDGTLYVNTFSLRDYQE---RIAAGQMGVIAQKNF 340 (433)
T ss_pred HHC--CCeEecccccCCCCc--hhhceeeccCCeEEEEcCCeeEecCCeEEEcCCCHHHHHH---HHHcCCCCeeeeeeC
Confidence 888 999999999999875 578888 778999999999999999999999999998864 566788888777789
Q ss_pred CHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccc
Q 012112 366 DAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLA 445 (471)
Q Consensus 366 ~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 445 (471)
+.++++.+.+|++|| ..|||++.|+++||.++.+.+...++.|++.|++..++ +
T Consensus 341 s~~e~~~~~~~~~L~-~~gld~~~f~~~~g~~~~~~~~~~l~~l~~~Gll~~~~-~------------------------ 394 (433)
T PRK08629 341 SKKEVMQYRFLLGMF-SGRLSIKYFRETFGVNLDKALFKEMLLLKLIGAIKNDP-G------------------------ 394 (433)
T ss_pred CHHHHHHHHHHHHHH-hCCcCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEC-C------------------------
Confidence 999999999999998 67999999999999999999999999999999998643 2
Q ss_pred eeeecCchhhchHHHHHHHHHhc
Q 012112 446 YFRLSDPEGFLLSNELISHAFGV 468 (471)
Q Consensus 446 ~~~lt~~~G~~~~n~i~~~~~~~ 468 (471)
+|+|| ++|++++|.|+.+|+..
T Consensus 395 ~l~lT-~~G~~~~d~i~~~f~~g 416 (433)
T PRK08629 395 DLIVT-DFGKYLGVVMMKEFYTG 416 (433)
T ss_pred EEEEC-cchhHHHHHHHHHHHhC
Confidence 47997 99999999999999853
No 20
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.7e-64 Score=528.70 Aligned_cols=292 Identities=26% Similarity=0.485 Sum_probs=265.5
Q ss_pred CCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCC-CCCCeeEEEEcCCCCCCCC
Q 012112 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK-TSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 51 ~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~-~~~~v~~i~fGGGTps~l~ 129 (471)
..+++||||||||+.+|.||+|++.... .......+|+++|++||+....... .+..+.+|||||||||+++
T Consensus 161 ~~~~sLYihIPFC~~~C~YCsf~s~~~~-------~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~ 233 (488)
T PRK08207 161 KNEVSIYIGIPFCPTRCLYCSFPSYPIK-------GYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT 233 (488)
T ss_pred CCceEEEEecCCCCCcCCCCCCccccCC-------CCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC
Confidence 5678999999999999999999876321 1234567899999999997654321 1346999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKF-GLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~-~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~ 207 (471)
++++.+|++.+++.| ++....|+|+|+ +|+++|+++++.|+++|++|||||+||+++++|+.+||.|+.+++.++++.
T Consensus 234 ~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ 313 (488)
T PRK08207 234 AEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHL 313 (488)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999988 666667999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHH
Q 012112 208 VKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSM 287 (471)
Q Consensus 208 ~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~ 287 (471)
++++||.+|++|||+|+||||.++|.++++.+.+++|+||++|.|+++|||++++.. ++..+|++++..+||..+.+.
T Consensus 314 ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~--~~~~~~~~~~~~~m~~~a~~~ 391 (488)
T PRK08207 314 AREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENK--EKYKVADREEIEKMMEEAEEW 391 (488)
T ss_pred HHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhc--CcCCCcCHHHHHHHHHHHHHH
Confidence 999999889999999999999999999999999999999999999999999999876 556689999999999999999
Q ss_pred HHHCCCcee------------ccccccCCCcchhhhhhhhc-CCCEEEEccCcccccC------CeEEEcCCChHHHHHH
Q 012112 288 LSSAGYRHY------------EISSYGEDGYECKHNLTYWK-NKPFYGFGLGSASYLG------GLRFSRPRRMKEFVDY 348 (471)
Q Consensus 288 L~~~Gy~~y------------eis~fa~~g~~~~hn~~yw~-~~~ylG~G~gA~s~~~------~~r~~n~~~~~~y~~~ 348 (471)
|.++||.+| |+++||+||++|+||..||. ..+|+|+|+||+|++. ..|+.|++++.+|++.
T Consensus 392 l~~~Gy~~Yylyrqk~~~~n~E~~~ya~~g~~~~~N~~~w~~~~~~iglG~gA~s~~~~~~~~~~~r~~N~k~~~~Y~~~ 471 (488)
T PRK08207 392 AKELGYVPYYLYRQKNMLGNLENVGYAKPGKESIYNIQIMEEKQTIIGLGAGAVSKFVFPDENRIERFANPKDPKEYIER 471 (488)
T ss_pred HHHcCCHhhhhhhccccccccceecccCCCcchhhHHHHHccCCeEEEEcCCcccCCCCCCCCcceEEecCCCHHHHHHH
Confidence 999999999 99999999999999999997 6799999999999983 4689999999999876
Q ss_pred HHH
Q 012112 349 VQN 351 (471)
Q Consensus 349 ~~~ 351 (471)
++.
T Consensus 472 i~~ 474 (488)
T PRK08207 472 IDE 474 (488)
T ss_pred HHH
Confidence 654
No 21
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=100.00 E-value=3.6e-33 Score=294.30 Aligned_cols=226 Identities=19% Similarity=0.338 Sum_probs=179.8
Q ss_pred cC-CCc-CCcCCCCCc-------ccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHH
Q 012112 61 PF-CRK-RCHYCDFPI-------VALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR 131 (471)
Q Consensus 61 PF-C~~-~C~yC~f~~-------~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~ 131 (471)
|| ||+ +|.||.-.. ...|.....++........|.+.. .+++.+...+.....++.+ |+||||+.++.+
T Consensus 75 p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~-~rl~~l~~~g~~~~kvE~i-~~GGTft~l~~~ 152 (522)
T TIGR01211 75 PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVT-ARLEQLEQIGHPVDKVELI-IMGGTFPARDLD 152 (522)
T ss_pred CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHH-HHHHHHHHhCCCCceEEEE-EECCCcccCCHH
Confidence 56 995 899996411 111111111111112224455544 3333333222212245555 778999999999
Q ss_pred HHHHHHHHHHHHcCC----------------------CCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 132 FVSSILDTLTDKFGL----------------------SLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l----------------------~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
+.+.+++.+.+.++- .....+|+|++|+.++++.|+.|+++|++||++||||+||++|
T Consensus 153 y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL 232 (522)
T TIGR01211 153 YQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDIL 232 (522)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH
Confidence 999999998887632 1247999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh---CCCCcEEEEeccccCCChhhhcccC
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG---AQPKHVSVYDLQVEQGTKFGILYTP 266 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~---l~p~his~y~l~~~pgT~l~~~~~~ 266 (471)
+.+||+|+.+++.++++.++++||. |++|||+||||||.+++.++++.+.+ ++|++|++|++.+.+||++++++++
T Consensus 233 ~~inRght~~~v~~Ai~~lr~~G~~-v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~ 311 (522)
T TIGR01211 233 ERTKRGHTVRDVVEATRLLRDAGLK-VVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKR 311 (522)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCe-EEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHc
Confidence 9999999999999999999999996 99999999999999999999999985 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 012112 267 GEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 267 g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
|.+.++++++..+++..+...+.
T Consensus 312 G~y~p~t~ee~v~l~~~~~~~lp 334 (522)
T TIGR01211 312 GEYKPYTTEEAVELIVEIKRMMP 334 (522)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Confidence 99999998888887777766664
No 22
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=100.00 E-value=7.8e-33 Score=276.23 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=151.0
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHH---CCC-CEEEEccCCCCHHHH
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMD---LGV-NRVSLGVQAFQDELL 189 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~---~Gv-nrvsiGvQS~~d~~L 189 (471)
...++|||||||++++.+.+.++++.+.+ + ....+|+++++|+.++++.++.|++ +|+ ++|++|+||+++++|
T Consensus 77 ~~~~iyf~ggt~t~l~~~~L~~l~~~i~~-~--~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L 153 (302)
T TIGR01212 77 KKFIAYFQAYTNTYAPVEVLKEMYEQALS-Y--DDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTL 153 (302)
T ss_pred CEEEEEEECCCcCCCCHHHHHHHHHHHhC-C--CCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHH
Confidence 35679999999999999999999999986 2 4567999999999999987777664 599 689999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCC
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF 269 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~ 269 (471)
+.|+|+|+.+++.++++.++++|+. +++|+|+|+||||.+++.++++++.+++|++|++|+|++.|||++++.+.+|.+
T Consensus 154 ~~i~Rg~t~~~~~~ai~~l~~~gi~-v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~ 232 (302)
T TIGR01212 154 KKINRGHDFACYVDAVKRARKRGIK-VCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGEL 232 (302)
T ss_pred HHHcCcChHHHHHHHHHHHHHcCCE-EEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCC
Confidence 9999999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 012112 270 PLPTETQSANFYRM 283 (471)
Q Consensus 270 ~~p~~~~~~~~~~~ 283 (471)
.+++.++..+.-..
T Consensus 233 ~~~~~~e~~~~~~~ 246 (302)
T TIGR01212 233 KTLSLEEYISLACD 246 (302)
T ss_pred CCCCHHHHHHHHHH
Confidence 98887764444333
No 23
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.97 E-value=5.2e-30 Score=272.71 Aligned_cols=221 Identities=14% Similarity=0.144 Sum_probs=189.3
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
||++|+||..+... ...+.+.++.+++||+.+.+.. .+..++|.+++|+. +.+.+.++++.|.+
T Consensus 203 Cp~~C~FC~~~~~~-----------~~~R~rs~e~Vv~Ei~~l~~~~----gv~~~~~~Dd~f~~-~~~~~~~l~~~l~~ 266 (497)
T TIGR02026 203 CPFTCNFCSQWKFW-----------RRYRHRDPKKFVDEIEWLVRTH----GVGFFILADEEPTI-NRKKFQEFCEEIIA 266 (497)
T ss_pred CCCCCCCCCCCCCC-----------ceeecCCHHHHHHHHHHHHHHc----CCCEEEEEeccccc-CHHHHHHHHHHHHh
Confidence 99999999876532 2355667889999999775433 37889999999975 88889999998876
Q ss_pred HcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 143 KFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 143 ~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
.-+ ....|.++++++.+ +++.++.|+++|+++|++|+||+++++|+.|+|+++.+++.++++.++++|+. +++++
T Consensus 267 ~~~--l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~-~~~~~ 343 (497)
T TIGR02026 267 RNP--ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNIL-SEAQF 343 (497)
T ss_pred cCC--CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCc-EEEEE
Confidence 521 23578888888877 89999999999999999999999999999999999999999999999999998 89999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q 012112 221 ISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISS 300 (471)
Q Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 300 (471)
|+|+||||.++++++++++.+++|++++++.++|.|||++++...+.... ..++.|......++..|+.+||+++
T Consensus 344 I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~~-----~d~~~y~~~~~~~~~~~m~~~El~~ 418 (497)
T TIGR02026 344 ITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVEV-----QDYTKYNFVTPIMKPTHMPRWEILL 418 (497)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhccc-----CchhhccccceEeeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999876553321 1355788888888899999999999
Q ss_pred ccCCCcc
Q 012112 301 YGEDGYE 307 (471)
Q Consensus 301 fa~~g~~ 307 (471)
+.+.-+.
T Consensus 419 ~~~~~~~ 425 (497)
T TIGR02026 419 GVKLNYI 425 (497)
T ss_pred HHHHHHH
Confidence 8875443
No 24
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=2.5e-28 Score=256.05 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=158.5
Q ss_pred CCCCCeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEE--------
Q 012112 49 PQLSPTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVF-------- 119 (471)
Q Consensus 49 ~~~~~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~-------- 119 (471)
++.++..+|+|| ++|+++|+||.++... | ..+.++++.+++||+...... ++.|+
T Consensus 133 ~~~~~~~~~l~isrGC~~~CsfC~~p~~~-g----------~~~sr~~e~Iv~Ei~~l~~~G-----~keI~l~g~~~~~ 196 (440)
T PRK14334 133 PPQGKLSAHLTIMRGCNHHCTYCIVPTTR-G----------PEVSRHPDLILRELELLKAAG-----VQEVTLLGQNVNS 196 (440)
T ss_pred ccCCCeEEEEEeccCCCCCCcCCCcchhc-C----------CCccCCHHHHHHHHHHHHHCC-----CeEEEEEeccccc
Confidence 345678999999 9999999999998652 1 124678999999999875432 34444
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCC
Q 012112 120 FGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAH 196 (471)
Q Consensus 120 fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~ 196 (471)
+||++|+.. .+.+|++.+.+. ++ ..+.+.. +|..++++.++.|++. |+++++||+||+|+++|+.|+|+|
T Consensus 197 yG~d~~~~~---~~~~Ll~~l~~~-~i---~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~ 269 (440)
T PRK14334 197 YGVDQPGFP---SFAELLRLVGAS-GI---PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREY 269 (440)
T ss_pred cccCCCCcC---CHHHHHHHHHhc-CC---cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCC
Confidence 455666543 355666666543 32 1345543 8999999999999995 599999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc
Q 012112 197 GLKEVYEAIEIVKLCGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~ 264 (471)
+.+++.++++.++++|+. .+++|||+|+||||.++++++++++.+++++++.+|.+++.|||+++++.
T Consensus 270 ~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~ 338 (440)
T PRK14334 270 RREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHF 338 (440)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhcc
Confidence 999999999999999765 47899999999999999999999999999999999999999999998764
No 25
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.95 E-value=2e-26 Score=231.06 Aligned_cols=204 Identities=21% Similarity=0.284 Sum_probs=163.3
Q ss_pred CCc----CCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCC--CeeEEEEcCC--CCCCCCHHHHH
Q 012112 63 CRK----RCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSP--PLETVFFGGG--TPSLVPPRFVS 134 (471)
Q Consensus 63 C~~----~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~--~v~~i~fGGG--Tps~l~~~~l~ 134 (471)
|++ .|.||+++..... .+..+.+.++|+.....+.... -+..+|.+|. .|+.++++.+.
T Consensus 25 C~~~~~g~C~FC~~~~~~~r-------------~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~ 91 (313)
T TIGR01210 25 CYWAREGGCYMCGYLADSSP-------------EVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRN 91 (313)
T ss_pred CCCCCCCcCccCCCCCCCCC-------------CCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHH
Confidence 999 5999986543210 1233444445543332221000 0235566655 67888999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCC-EEEEccCCCCHHHHH-HcCCCCCHHHHHHHHHHHHHcC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVN-RVSLGVQAFQDELLK-SCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~-~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+|++.+++.. ...+|++|++|+.++++.|+.|+++|++ +|++|+||+++++|+ .+||+|+.+++.++++.++++|
T Consensus 92 ~i~~~l~~~~---~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~G 168 (313)
T TIGR01210 92 YIFEKIAQRD---NLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYG 168 (313)
T ss_pred HHHHHHHhcC---CcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Confidence 9999998742 2358999999999999999999999999 899999999999995 8999999999999999999999
Q ss_pred CCeeEeeeecCCCC----CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHH
Q 012112 213 VENWSLDLISSLPH----QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMA 284 (471)
Q Consensus 213 ~~~v~~DlI~GlPg----qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~ 284 (471)
+. +++++|+|+|+ ||.+++.++++.+.+++ +||++|++++.|||++++++++|.+.+|......+....+
T Consensus 169 i~-v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~ 242 (313)
T TIGR01210 169 AG-VKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEA 242 (313)
T ss_pred Cc-EEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98 99999999995 77789999999999999 9999999999999999999999999998765555555443
No 26
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.95 E-value=2.7e-27 Score=250.83 Aligned_cols=184 Identities=15% Similarity=0.195 Sum_probs=160.3
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
||++|+||+++....+ ...+.++++.+++||+...+.+ ..++.++|+|++++. +.+.+.++++.+++
T Consensus 206 Cp~~C~FC~~~~~~~g---------~~~r~rs~e~V~~Ei~~~~~~~---~~~~~i~f~Dd~f~~-~~~~~~~l~~~l~~ 272 (472)
T TIGR03471 206 CPSKCTFCLWPQTVGG---------HRYRTRSAESVIEEVKYALENF---PEVREFFFDDDTFTD-DKPRAEEIARKLGP 272 (472)
T ss_pred CCCCCCCCCCCccCCC---------CceEeCCHHHHHHHHHHHHHhc---CCCcEEEEeCCCCCC-CHHHHHHHHHHHhh
Confidence 9999999987643222 2456678999999999776532 247899999999875 77889999998875
Q ss_pred HcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec
Q 012112 143 KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS 222 (471)
Q Consensus 143 ~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~ 222 (471)
. +..|.++++. +++++.++.|+++|+++|++|+||+++++|+.++|+++.+++.++++.++++|+. +++++|+
T Consensus 273 ~-----~i~~~~~~~~-~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~-v~~~~Ii 345 (472)
T TIGR03471 273 L-----GVTWSCNARA-NVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIK-VHGTFIL 345 (472)
T ss_pred c-----CceEEEEecC-CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCe-EEEEEEE
Confidence 3 2467777765 4899999999999999999999999999999999999999999999999999997 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccC
Q 012112 223 SLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTP 266 (471)
Q Consensus 223 GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~ 266 (471)
|+||||.+++.++++++.++++++++++.+++.|||++++...+
T Consensus 346 GlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 346 GLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQ 389 (472)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999876543
No 27
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=6.9e-27 Score=245.75 Aligned_cols=190 Identities=19% Similarity=0.300 Sum_probs=157.7
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEE------------
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFF------------ 120 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~f------------ 120 (471)
...||+|++ |+++|+||.++...+ ..+.++++.+++||+.+.... +..+.|
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG-----------~~rsr~~e~V~~Ei~~l~~~g-----~kei~l~~~~~~~yg~d~ 211 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRG-----------KEQSRTPEAIRAEIEELAAQG-----YKEITLLGQNIDAYGRDL 211 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccC-----------CCcccCHHHHHHHHHHHHHCC-----CcEEEEEecccchhcCCC
Confidence 468999999 999999999886532 124567899999999765432 344433
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEE-EecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCC
Q 012112 121 GGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISM-EMDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHG 197 (471)
Q Consensus 121 GGGTps~l~~~~l~~ll~~l~~~~~l~~~~eiti-E~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t 197 (471)
+|++|+......+.++++.+.+..++ ..+++ ..+|+.++++.++.|+++ |+++++||+||+++++|+.|+|+++
T Consensus 212 ~~~~p~~~~~~~l~~Ll~~i~~~~~~---~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t 288 (448)
T PRK14333 212 PGTTPEGRHQHTLTDLLYYIHDVEGI---ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYT 288 (448)
T ss_pred CCccccccccccHHHHHHHHHhcCCC---eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCC
Confidence 24455443345788888888764332 35666 458999999999999996 5999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 198 LKEVYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 198 ~~~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
.+++.++++.++++ |+. ++.|+|+|+||||.++++++++++.++++++++++.|++.|||+++++
T Consensus 289 ~e~~~~~i~~lr~~~p~i~-i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~ 355 (448)
T PRK14333 289 HEKYRRIIDKIREYMPDAS-ISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALW 355 (448)
T ss_pred HHHHHHHHHHHHHhCCCcE-EEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhC
Confidence 99999999999999 664 899999999999999999999999999999999999999999999876
No 28
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=6.7e-26 Score=239.67 Aligned_cols=193 Identities=20% Similarity=0.284 Sum_probs=159.1
Q ss_pred CCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 51 LSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 51 ~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
......||.|.. |+++|+||..+...+ ..+.+.++.+++||+.+... .++.|.|-|.+.+...
T Consensus 209 ~~~~~a~v~I~~GC~~~CsFC~vp~~rG-----------~~Rsr~~e~Ii~Ei~~l~~~-----G~keI~L~g~n~~~yg 272 (509)
T PRK14327 209 EGNIKAWVNIMYGCDKFCTYCIVPYTRG-----------KERSRRPEDIIQEVRHLARQ-----GYKEITLLGQNVNAYG 272 (509)
T ss_pred CCCeEEEEEecCCCCCCCcCCcccccCC-----------CCeeCCHHHHHHHHHHHHHC-----CCcEEEEEeeccccCc
Confidence 345789999999 999999999875432 23456688999999987643 2556666665543321
Q ss_pred ------HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHH
Q 012112 130 ------PRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKE 200 (471)
Q Consensus 130 ------~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~ 200 (471)
...+.+|++.|.+. ++ ..+.+. .+|..++++.++.|+++| +++++||+||+|+++|+.|+|+++.++
T Consensus 273 ~d~~~~~~~l~~Ll~~I~~~-~i---~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~ 348 (509)
T PRK14327 273 KDFEDIEYGLGDLMDEIRKI-DI---PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRES 348 (509)
T ss_pred ccccccchHHHHHHHHHHhC-CC---ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHH
Confidence 23577888888764 33 134443 589999999999999999 789999999999999999999999999
Q ss_pred HHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc
Q 012112 201 VYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 201 ~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~ 264 (471)
+.++++.++++ |+. +++|+|+|+||||.+++++|++++.+++++++.+|.+++.|||+++++.
T Consensus 349 ~~~~v~~lr~~~p~i~-i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 349 YLELVRKIKEAIPNVA-LTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred HHHHHHHHHHhCCCcE-EeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCc
Confidence 99999999998 554 7889999999999999999999999999999999999999999998753
No 29
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.94 E-value=6.1e-26 Score=227.54 Aligned_cols=172 Identities=23% Similarity=0.363 Sum_probs=154.3
Q ss_pred CCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcC----------------CCCCcEEEEEecCCCCCHHHHHHHHHCCCC
Q 012112 112 SPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFG----------------LSLDAEISMEMDPGTFDARKMEELMDLGVN 175 (471)
Q Consensus 112 ~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~----------------l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn 175 (471)
...++-+++| ||++-++.+.-+.++..+.+... .....-+|+|++|+.++++.+..|.+.|++
T Consensus 132 ~~KvEliimG-GTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~T 210 (515)
T COG1243 132 SDKVELIIMG-GTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVT 210 (515)
T ss_pred cceEEEEEec-ccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCc
Confidence 3457888885 69999999888888877766544 333456999999999999999999999999
Q ss_pred EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC---CCcEEEEec
Q 012112 176 RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ---PKHVSVYDL 252 (471)
Q Consensus 176 rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~---p~his~y~l 252 (471)
+|.+||||+.|++|+..+|+||.+++.+|.+.++++||+ |+..+|.||||-+.+.-.++...+.+.+ ||.+-+|+.
T Consensus 211 rVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfK-v~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPt 289 (515)
T COG1243 211 RVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFK-VGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPT 289 (515)
T ss_pred EEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCcE-EEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeee
Confidence 999999999999999999999999999999999999998 9999999999999998888888888876 999999999
Q ss_pred cccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 253 QVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 253 ~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
.+.+||++++++++|.+.+-+.++..++-..+.
T Consensus 290 LVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 290 LVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred EEECCchHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988888776665
No 30
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=9.5e-26 Score=237.93 Aligned_cols=192 Identities=17% Similarity=0.225 Sum_probs=154.3
Q ss_pred CeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-------
Q 012112 53 PTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT------- 124 (471)
Q Consensus 53 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT------- 124 (471)
....||.|-- ||++|+||..+... | ..+.+.++.+++||+.+.... +..|.|-|.+
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~-G----------~~rsrs~e~Vv~Ei~~l~~~g-----~~eI~l~~~~~~~y~~d 230 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTR-G----------RERSRDPESILNEVRDLFAKG-----YKEVTLLGQNVDSYLWY 230 (467)
T ss_pred CcEEEEEeccCcccCCCCCcccccc-C----------CcccCCHHHHHHHHHHHHHCC-----CeEEEEEeecccccccc
Confidence 3456777644 99999999987542 2 245677899999999775432 4444443322
Q ss_pred ---CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCH
Q 012112 125 ---PSLVPPRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGL 198 (471)
Q Consensus 125 ---ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~ 198 (471)
++......+.+|++.+.+..+ ...+.+. .+|..++++.++.|+++ ||++|+||+||+|+++|+.|+|+++.
T Consensus 231 ~~~~~~~~~~~l~~Ll~~l~~~~~---~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~ 307 (467)
T PRK14329 231 GGGLKKDEAVNFAQLLEMVAEAVP---DMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTR 307 (467)
T ss_pred cCCccccccccHHHHHHHHHhcCC---CcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCH
Confidence 211123467888888776432 3356666 48999999999999997 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc
Q 012112 199 KEVYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 199 ~~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~ 264 (471)
+++.++++.++++ ++. +++|+|+|+||||.++++++++++.+++++++.+|.|++.|||++++.+
T Consensus 308 ~~~~~~i~~ir~~~~~~~-i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~ 374 (467)
T PRK14329 308 EWYLDRIDAIRRIIPDCG-ISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKL 374 (467)
T ss_pred HHHHHHHHHHHHhCCCCE-EEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhC
Confidence 9999999999998 454 8999999999999999999999999999999999999999999999754
No 31
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=5e-26 Score=238.66 Aligned_cols=191 Identities=22% Similarity=0.323 Sum_probs=159.3
Q ss_pred CeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH-
Q 012112 53 PTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP- 130 (471)
Q Consensus 53 ~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~- 130 (471)
....|++| .-|+++|+||..+... | ..+.+.++.+++|++.+... .++.|+|.|.+++....
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~-g----------~~rsr~~e~V~~Ei~~l~~~-----g~~eI~l~d~~~~~y~~~ 208 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTR-G----------KERSRRLGSILDEVQWLVDD-----GVKEIHLIGQNVTAYGKD 208 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCC-C----------CcccCCHHHHHHHHHHHHHC-----CCeEEEEeeeccccccCC
Confidence 34678874 4599999999987542 1 23566789999999987642 37889998888765322
Q ss_pred ---HHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHH
Q 012112 131 ---RFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEA 204 (471)
Q Consensus 131 ---~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~a 204 (471)
..+.++++.+.+..++ ..+.+. .+|..++++.++.|+++ |+++|++|+||+++++|+.|+|+++.+++.++
T Consensus 209 ~~~~~~~~Ll~~l~~~~g~---~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~ 285 (437)
T PRK14331 209 IGDVPFSELLYAVAEIDGV---ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEK 285 (437)
T ss_pred CCCCCHHHHHHHHhcCCCc---cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHH
Confidence 2467777777654332 134444 38999999999999998 59999999999999999999999999999999
Q ss_pred HHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 205 IEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 205 i~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++++|.|++.|||+++++
T Consensus 286 v~~lr~~~~gi~-i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~ 345 (437)
T PRK14331 286 IELLKEYIPDIT-FSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYM 345 (437)
T ss_pred HHHHHHhCCCCE-EecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhC
Confidence 9999999 886 999999999999999999999999999999999999999999999986
No 32
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=8.2e-26 Score=236.90 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=155.8
Q ss_pred CeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC----
Q 012112 53 PTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL---- 127 (471)
Q Consensus 53 ~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~---- 127 (471)
....||+| ..|+++|+||..+... | ..+.+.++.+++||+.+.+. .++.|.|.|.+...
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~-G----------~~rsr~~e~Iv~Ei~~l~~~-----g~kei~l~~~n~~~yg~~ 202 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTR-G----------REKSRPMEDILEEVEKLAKQ-----GYREVTFLGQNVDAYGKD 202 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcC-C----------CCccCCHHHHHHHHHHHHHC-----CCcEEEEEEecccccccC
Confidence 35567776 6799999999987543 2 13466788999999977543 25566665543321
Q ss_pred C-CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHHH
Q 012112 128 V-PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEA 204 (471)
Q Consensus 128 l-~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~a 204 (471)
+ ++..+.++++.+.+.-++. .-+....+|..++++.++.|+++| +++++||+||+++++|+.|+|+++.+++.++
T Consensus 203 ~~~~~~l~~Ll~~~~~~~~~~--~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~ 280 (434)
T PRK14330 203 LKDGSSLAKLLEEASKIEGIE--RIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLEL 280 (434)
T ss_pred CCCCccHHHHHHHHHhcCCce--EEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHH
Confidence 1 2345777777665543321 224446789999999999999998 7999999999999999999999999999999
Q ss_pred HHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhccc
Q 012112 205 IEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYT 265 (471)
Q Consensus 205 i~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~ 265 (471)
++.++++ |+. +++|+|+|+||||.++++++++++.+++++++.+|.|++.|||++++++.
T Consensus 281 i~~lr~~~~~i~-i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~ 342 (434)
T PRK14330 281 IEKIRSKVPDAS-ISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYK 342 (434)
T ss_pred HHHHHHhCCCCE-EEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCc
Confidence 9999997 665 99999999999999999999999999999999999999999999998543
No 33
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=2.5e-25 Score=233.32 Aligned_cols=190 Identities=17% Similarity=0.261 Sum_probs=156.0
Q ss_pred CeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH-
Q 012112 53 PTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP- 130 (471)
Q Consensus 53 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~- 130 (471)
....|+.|-- |+++|+||..+... | ..+.+.++.+++|++.+... .++.|+|-|.+.+....
T Consensus 153 ~~~a~l~isrGC~~~CsFC~ip~~r-G----------~~rsr~~e~Iv~Ei~~l~~~-----G~kei~l~~~~~~~y~~~ 216 (449)
T PRK14332 153 GIQAFVTIMRGCNNFCTFCVVPYTR-G----------RERSRDPKSIVREIQDLQEK-----GIRQVTLLGQNVNSYKEQ 216 (449)
T ss_pred CceEEEEecCCcCCCCCCCCccccc-C----------CcccCCHHHHHHHHHHHHHC-----CCeEEEEecccCCcccCC
Confidence 3456777666 99999999887542 1 23567789999999987543 37888888777765433
Q ss_pred -HHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHH
Q 012112 131 -RFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIE 206 (471)
Q Consensus 131 -~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~ 206 (471)
..+.++++.+.+. .....+.+.. +|..++++.++.|+++| ++++++|+||++|++|+.|+|+++.+++.++++
T Consensus 217 ~~~l~~Ll~~l~~~---~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~ 293 (449)
T PRK14332 217 STDFAGLIQMLLDE---TTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVK 293 (449)
T ss_pred cccHHHHHHHHhcC---CCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 2355565555432 2223455543 89999999999999998 999999999999999999999999999999999
Q ss_pred HHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhh
Q 012112 207 IVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGI 262 (471)
Q Consensus 207 ~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~ 262 (471)
.++++ |+. ++.|+|+|+||||.++++++++++.+++++++++|.|+++|||+.++
T Consensus 294 ~lr~~~p~i~-i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~ 350 (449)
T PRK14332 294 EIRNIVPDVG-ITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKR 350 (449)
T ss_pred HHHHhCCCCE-EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHH
Confidence 99998 554 78999999999999999999999999999999999999999999984
No 34
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.94 E-value=1e-25 Score=235.12 Aligned_cols=189 Identities=16% Similarity=0.289 Sum_probs=155.1
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC----
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP---- 129 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~---- 129 (471)
..||.+-= ||++|+||..+...+ ..+.+.++.+++||+.+.+. .++.|.|.|.+.+...
T Consensus 139 ~~~i~isrGCp~~CsfC~~~~~~g-----------~~r~r~~e~I~~Ei~~l~~~-----g~~ei~l~~~~~~~y~~d~~ 202 (414)
T TIGR01579 139 RAFIKVQDGCNFFCSYCIIPFARG-----------RSRSVPMEAILKQVKILVAK-----GYKEIVLTGVNLGSYGDDLK 202 (414)
T ss_pred EEEEEeccCcCCCCCCCceeeecC-----------CCccCCHHHHHHHHHHHHHC-----CCceEEEeeEccchhccCCC
Confidence 34555544 999999998765421 34566789999999977543 3667777665544332
Q ss_pred -HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHH
Q 012112 130 -PRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAI 205 (471)
Q Consensus 130 -~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai 205 (471)
...+.+|++.+.+.-+ ...+.+. ++|+.++++.++.|+++| ++++++|+||+|+++|+.|+|+++.+++.+++
T Consensus 203 ~~~~l~~Ll~~l~~~~~---~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v 279 (414)
T TIGR01579 203 NGTSLAKLLEQILQIPG---IKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLV 279 (414)
T ss_pred CCCcHHHHHHHHhcCCC---CcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHH
Confidence 2457788887775322 2234443 589999999999999987 89999999999999999999999999999999
Q ss_pred HHHHH--cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 206 EIVKL--CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 206 ~~~~~--~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
+.+++ .|+. ++.|+|+|+||||.++++++++++.+++++++++|.|++.|||+++++
T Consensus 280 ~~l~~~~~gi~-i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~ 338 (414)
T TIGR01579 280 NKLRSVRPDYA-FGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTM 338 (414)
T ss_pred HHHHHhCCCCe-eeeeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhC
Confidence 99999 7886 999999999999999999999999999999999999999999999886
No 35
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=2.6e-25 Score=234.03 Aligned_cols=192 Identities=18% Similarity=0.236 Sum_probs=154.3
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH---
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP--- 130 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~--- 130 (471)
..||.|-- |+++|+||..+... | ..+.++++.+++||+.+.+. +++.|+|.|.+.+....
T Consensus 153 ~~~i~I~rGC~~~CsfC~~p~~r-G----------~~rsr~~e~Vv~Ei~~l~~~-----G~~ei~l~g~~~~~y~~~~~ 216 (455)
T PRK14335 153 QSFIPIMNGCNNFCSYCIVPYVR-G----------REISRDLDAILQEIDVLSEK-----GVREITLLGQNVNSYRGRDR 216 (455)
T ss_pred eEEEEhhcCCCCCCCCCCcccCC-C----------CCccCCHHHHHHHHHHHHHC-----CCeEEEEEeecccccccccc
Confidence 34555433 99999999987553 1 12456789999999987543 36777777766644311
Q ss_pred ----HHHHHHHHHHHHHcCCCCCc-EEE-EEecCCCCCHHHHHHHHH--CCCCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 131 ----RFVSSILDTLTDKFGLSLDA-EIS-MEMDPGTFDARKMEELMD--LGVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 131 ----~~l~~ll~~l~~~~~l~~~~-eit-iE~~P~~l~~e~l~~l~~--~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
..+.++++.|.+......+. .+. ..++|..++++.++.|++ .|++++++|+||+++++|+.|+|+++.+++.
T Consensus 217 ~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~ 296 (455)
T PRK14335 217 EGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYL 296 (455)
T ss_pred cCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHH
Confidence 14667777764322211122 344 346999999999999998 4899999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 203 EAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 203 ~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
++++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.+|.+++.|||+++++
T Consensus 297 ~~v~~ir~~~pgi~-i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~ 358 (455)
T PRK14335 297 SLVGKLKASIPNVA-LSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDF 358 (455)
T ss_pred HHHHHHHHhCCCCE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhC
Confidence 999999999 885 999999999999999999999999999999999999999999999875
No 36
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=4.6e-25 Score=232.40 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=166.9
Q ss_pred CCeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC--
Q 012112 52 SPTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV-- 128 (471)
Q Consensus 52 ~~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l-- 128 (471)
+....|+.| .-|+++|+||..+...+ ..+.+.++.+++|++.+.+. .++.|.|.|.+.+..
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G-----------~~rsr~~e~Il~ei~~l~~~-----G~keI~l~g~~~~~yG~ 216 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRG-----------RERSRPLAEIVEEVRRIAAR-----GAKEITLLGQIVDSYGH 216 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCC-----------CCccCCHHHHHHHHHHHHHC-----CCeEEEEeeecCCCccc
Confidence 456789998 66999999998875431 23456788999999877543 367788877554332
Q ss_pred ---CHHHHHHHHHHHHHHcCCCCCcEEEE-EecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 129 ---PPRFVSSILDTLTDKFGLSLDAEISM-EMDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 129 ---~~~~l~~ll~~l~~~~~l~~~~eiti-E~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
+...+.+|++.+.+..++ ..+.+ ..+|..++++.++.|+++ |++++++|+||+++++|+.|+|+++.+++.
T Consensus 217 d~~~~~~l~~Ll~~l~~~~gi---~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~ 293 (459)
T PRK14338 217 DLPGRPDLADLLEAVHEIPGL---ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYR 293 (459)
T ss_pred ccCChHHHHHHHHHHHhcCCc---ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHH
Confidence 235688888888765332 23444 359999999999999995 599999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHH
Q 012112 203 EAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTET 275 (471)
Q Consensus 203 ~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~ 275 (471)
++++.++++ |+. ++.|+|+|+||||.+++.++++++.+++++++.++.+++.|||+++++..++.+..|.+.
T Consensus 294 ~~i~~lr~~~pgi~-i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~ 367 (459)
T PRK14338 294 ELIARIREAIPDVS-LTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEE 367 (459)
T ss_pred HHHHHHHHhCCCCE-EEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHH
Confidence 999999998 775 899999999999999999999999999999999999999999999988666666555544
No 37
>PRK07094 biotin synthase; Provisional
Probab=99.93 E-value=3.8e-25 Score=223.54 Aligned_cols=206 Identities=13% Similarity=0.148 Sum_probs=169.0
Q ss_pred ccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHH
Q 012112 60 LPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDT 139 (471)
Q Consensus 60 IPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~ 139 (471)
-.+|+.+|.||.++...... .......+.+++|++...+ .+++.++|+||++..++.+.+.++++.
T Consensus 46 s~gC~~~C~fC~~~~~~~~~---------~r~~ls~eei~~~~~~~~~-----~g~~~i~l~gG~~~~~~~~~l~~l~~~ 111 (323)
T PRK07094 46 SNYCRNNCLYCGLRRDNKNI---------ERYRLSPEEILECAKKAYE-----LGYRTIVLQSGEDPYYTDEKIADIIKE 111 (323)
T ss_pred CCCCCCCCEeCCcccCCCCC---------cCcCCCHHHHHHHHHHHHH-----CCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 35599999999987542110 0011135677777776543 237889999887555688899999999
Q ss_pred HHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee
Q 012112 140 LTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 140 l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
|++..+ ..+ ..+++.++++.++.|+++|++++++|+||+++++++.+++.++.+++.++++.++++|+. ++.+
T Consensus 112 i~~~~~----l~i--~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~-v~~~ 184 (323)
T PRK07094 112 IKKELD----VAI--TLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYE-VGSG 184 (323)
T ss_pred HHccCC----ceE--EEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe-ecce
Confidence 987532 233 356677899999999999999999999999999999999999999999999999999997 9999
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
+|+|+||||.+++.++++++.+++++.++++.+++.||||+++. ..++.++..++...++..+....
T Consensus 185 ~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~------~~~~~~~~~~~~a~~R~~lp~~~ 251 (323)
T PRK07094 185 FMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDE------KGGSLELTLKVLALLRLLLPDAN 251 (323)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccC------CCCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999999999999999874 24567777888888888876543
No 38
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=1.8e-25 Score=234.40 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=157.5
Q ss_pred CeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC--
Q 012112 53 PTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP-- 129 (471)
Q Consensus 53 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~-- 129 (471)
....||.|-- |+++|+||..+...+ ..+.+.++.+++|++.+.+. .++.|+|.|.+.+...
T Consensus 148 ~~~a~l~isrGC~~~CsFC~ip~~rG-----------~~rsr~~e~Vv~Ei~~l~~~-----G~~ei~l~~~~~~~y~d~ 211 (445)
T PRK14340 148 SISAFVPVMRGCNNMCAFCVVPFTRG-----------RERSHPFASVLDEVRALAEA-----GYREITLLGQNVNSYSDP 211 (445)
T ss_pred CcEEEEEeccCCCCCCCCCCcccccC-----------CCcCCCHHHHHHHHHHHHHC-----CCeEEEEeecccchhhcc
Confidence 3456776655 999999999875421 23556688999999987643 3677777666654332
Q ss_pred --HHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHH
Q 012112 130 --PRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEA 204 (471)
Q Consensus 130 --~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~a 204 (471)
...+.+|++.+.+. .....+.+.+ +|..++++.++.|+++ ||++|.||+||++|++|+.|+|+++.+++.++
T Consensus 212 ~~~~~l~~Ll~~l~~~---~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~ 288 (445)
T PRK14340 212 EAGADFAGLLDAVSRA---APEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEK 288 (445)
T ss_pred CCCchHHHHHHHHhhc---CCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHH
Confidence 12467777777543 2334666664 8999999999999996 79999999999999999999999999999999
Q ss_pred HHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhh
Q 012112 205 IEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGI 262 (471)
Q Consensus 205 i~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~ 262 (471)
++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.+|.++++|||++++
T Consensus 289 v~~lr~~~pgi~-i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~ 347 (445)
T PRK14340 289 IALIRSAIPGVT-LSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAAR 347 (445)
T ss_pred HHHHHHhCCCCE-EeccEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhh
Confidence 9999999 996 99999999999999999999999999999999999999999999985
No 39
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.93 E-value=4.7e-25 Score=231.40 Aligned_cols=192 Identities=20% Similarity=0.247 Sum_probs=157.4
Q ss_pred CCeEEEEecc-CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC-C
Q 012112 52 SPTSAYIHLP-FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV-P 129 (471)
Q Consensus 52 ~~~~lYiHIP-FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l-~ 129 (471)
+....||.|- -|+++|+||..+... | ..+.+.++.+++|++.+.+. .+..|+|.|.+.+.. .
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~-G----------~~rsr~~e~I~~Ei~~l~~~-----g~~ei~l~~~~~~~y~g 206 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTR-G----------DEISRPFDDILQEVQKLAEK-----GVREITLLGQNVNAYRG 206 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeec-C----------CCcccCHHHHHHHHHHHHHc-----CCeEEEEEecccCCccC
Confidence 3467899985 599999999987543 1 23467789999999987653 256677766555443 1
Q ss_pred ------HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHH
Q 012112 130 ------PRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKE 200 (471)
Q Consensus 130 ------~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~ 200 (471)
...+.+|++.|.+..++ ..+.+. ++|..++++.++.|+++| ++++++|+||+|+++|+.|+|+++.++
T Consensus 207 ~d~~~~~~~l~~Ll~~l~~~~~~---~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~ 283 (438)
T TIGR01574 207 KDFEGKTMDFSDLLRELSTIDGI---ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREW 283 (438)
T ss_pred CCCCCCcccHHHHHHHHHhcCCc---eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHH
Confidence 12467777777653222 234443 589999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 201 VYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 201 ~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
+.++++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.++.|++.|||+++++
T Consensus 284 ~~~~v~~ir~~~~~i~-i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~ 347 (438)
T TIGR01574 284 YLNLVRKLRAACPNVS-ISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADM 347 (438)
T ss_pred HHHHHHHHHHhCCCCe-EeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhC
Confidence 99999999998 564 889999999999999999999999999999999999999999999976
No 40
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=5.5e-25 Score=231.41 Aligned_cols=191 Identities=21% Similarity=0.280 Sum_probs=156.5
Q ss_pred CeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC--
Q 012112 53 PTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP-- 129 (471)
Q Consensus 53 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~-- 129 (471)
+...|+.|-= |+++|+||..+... | ..+.+.++.+++|++.+.+. .++.|+|.|.+.+...
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~-G----------~~~sr~~e~Iv~Ei~~l~~~-----g~~ei~l~d~~~~~y~~~ 209 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTR-G----------EEVSRPVDDVLAEVAQLAEQ-----GVREITLLGQNVNAYRGE 209 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCccc-C----------CcccCCHHHHHHHHHHHHHC-----CCcEEEEEeeccccccCC
Confidence 3456666544 99999999987542 2 12356789999999977643 2566777766654431
Q ss_pred -----HHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHH
Q 012112 130 -----PRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEV 201 (471)
Q Consensus 130 -----~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~ 201 (471)
...+.+|++.|.+.-++ ..+.+.+ +|..++++.++.|+++| ++++++|+||+++++|+.|+|+++.+++
T Consensus 210 ~~~~~~~~l~~Ll~~l~~~~~~---~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~ 286 (444)
T PRK14325 210 GPDGEIADFAELLRLVAAIDGI---ERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEY 286 (444)
T ss_pred CCCCCcchHHHHHHHHHhcCCc---cEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHH
Confidence 23678888887653222 2355554 89999999999999985 9999999999999999999999999999
Q ss_pred HHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 202 YEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 202 ~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
.++++.++++ |+. +++|+|+|+||||.++++++++++.+++++++.+|.|++.|||+++++
T Consensus 287 ~~~i~~lr~~~~gi~-v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~ 349 (444)
T PRK14325 287 KSIIRKLRAARPDIA-ISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADL 349 (444)
T ss_pred HHHHHHHHHHCCCCE-EEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhC
Confidence 9999999998 665 999999999999999999999999999999999999999999999976
No 41
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=5.4e-25 Score=231.17 Aligned_cols=193 Identities=19% Similarity=0.277 Sum_probs=157.1
Q ss_pred CCeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC-
Q 012112 52 SPTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP- 129 (471)
Q Consensus 52 ~~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~- 129 (471)
.+...||+| .-|+++|+||..+... | ..+.+.++.+++|++.+.+. .++.|+|.|.+.+...
T Consensus 146 ~~~~a~v~i~rGC~~~CsFC~ip~~r-G----------~~rsr~~e~Iv~Ei~~l~~~-----G~~eI~l~~~~~~~yg~ 209 (446)
T PRK14337 146 VPASAFVNIMQGCDNFCAYCIVPYTR-G----------RQKSRSSAAVLDECRALVDR-----GAREITLLGQNVNSYGQ 209 (446)
T ss_pred CCcEEEEEeccCCCCCCcCCCcccCC-C----------CCeeCCHHHHHHHHHHHHHC-----CCeEEEEEecCcccccc
Confidence 345689998 5599999999887542 1 23566789999999987653 3677888776543321
Q ss_pred -----HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 130 -----PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 130 -----~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
...+.+|++.|.+.-++. ...|+. .+|..++++.++.|++. |+++|++|+||+++++|+.|+|+|+.+++.
T Consensus 210 d~~~~~~~l~~Ll~~l~~~~g~~-~ir~~~-~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~ 287 (446)
T PRK14337 210 DKHGDGTSFAQLLHKVAALPGLE-RLRFTT-PHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYL 287 (446)
T ss_pred CCCCCCccHHHHHHHHHhcCCCc-EEEEcc-CCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHH
Confidence 135677777776542321 233433 69999999999999984 699999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 203 EAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 203 ~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
++++.++++ |+. +++|+|+|+||||.++++++++++.+++++++.+|.|+++|||+.+++
T Consensus 288 ~~v~~lr~~~~~i~-i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~ 349 (446)
T PRK14337 288 DIVTDLRAARPDIA-LTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEML 349 (446)
T ss_pred HHHHHHHHhCCCCe-EEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccC
Confidence 999999998 564 899999999999999999999999999999999999999999999875
No 42
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=7.3e-25 Score=230.01 Aligned_cols=214 Identities=18% Similarity=0.227 Sum_probs=166.8
Q ss_pred CCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC-
Q 012112 52 SPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP- 129 (471)
Q Consensus 52 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~- 129 (471)
+....||.|.- |+++|+||..+...+ ..+.+.++.+++|++.+.+. .++.|+|.|.+.+...
T Consensus 145 ~~~~~~i~i~rGC~~~CsfC~~p~~~g-----------~~Rsr~~e~Iv~Ei~~l~~~-----G~~ei~l~~~~~~~yg~ 208 (439)
T PRK14328 145 SKVKAFVTIMYGCNNFCTYCIVPYVRG-----------RERSRKPEDIIAEIKELVSE-----GYKEVTLLGQNVNSYGK 208 (439)
T ss_pred CCcEEEEEHHhCcCCCCCCCCcccccC-----------CcccCCHHHHHHHHHHHHHC-----CCcEEEEeccccCcCCc
Confidence 34667999998 999999999876532 12455678899999876543 3667777776654321
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCcEEEE-EecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 130 ----PRFVSSILDTLTDKFGLSLDAEISM-EMDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 130 ----~~~l~~ll~~l~~~~~l~~~~eiti-E~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
...+.+|++.+.+..+ ...+.+ ..+|+.++++.++.|+++| ++++++|+||+++++|+.|+|+++.+++.
T Consensus 209 d~~~~~~l~~Ll~~l~~~~~---~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~ 285 (439)
T PRK14328 209 DLEEKIDFADLLRRVNEIDG---LERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYL 285 (439)
T ss_pred CCCCCcCHHHHHHHHHhcCC---CcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHH
Confidence 1347778877765322 223444 3589999999999999986 99999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHH
Q 012112 203 EAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANF 280 (471)
Q Consensus 203 ~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~ 280 (471)
++++.++++ |+. +++|+|+|+||||.++++++++++.+++++++.++.+++.|||+++++.. . .+.+...+.
T Consensus 286 ~~i~~lr~~~~~i~-i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~--~---v~~~~~~~r 359 (439)
T PRK14328 286 ELVEKIKSNIPDVA-ITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMED--Q---VPEDVKHER 359 (439)
T ss_pred HHHHHHHHhCCCCE-EEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCC--C---CCHHHHHHH
Confidence 999999998 554 78999999999999999999999999999999999999999999987532 2 234444555
Q ss_pred HHHHHHHHHH
Q 012112 281 YRMASSMLSS 290 (471)
Q Consensus 281 ~~~~~~~L~~ 290 (471)
+....+...+
T Consensus 360 ~~~l~~~~~~ 369 (439)
T PRK14328 360 FNRLVELQNK 369 (439)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 43
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=7.6e-25 Score=228.16 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=159.0
Q ss_pred CCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC-
Q 012112 52 SPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP- 129 (471)
Q Consensus 52 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~- 129 (471)
++...||.|-= |+++|+||..+...+ ..+.+.++.+++|++.+.+. .+..|+|.|.+.+...
T Consensus 122 ~~~~a~i~i~rGC~~~CsFC~ip~~rG-----------~~rsrs~e~Iv~Ei~~l~~~-----G~~ei~l~~~~~~~yg~ 185 (418)
T PRK14336 122 PPVSANVTIMQGCDNFCTYCVVPYRRG-----------REKSRSIAEIGCEVAELVRR-----GSREVVLLGQNVDSYGH 185 (418)
T ss_pred CCeEEEEEeccCCCCCCccCCccccCC-----------CCccCCHHHHHHHHHHHHHC-----CCeEEEEEecCcccccc
Confidence 34556766655 999999998875421 23566789999999987643 3678888888765432
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 130 ----PRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 130 ----~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
...+.+|++.+.+. .....+.+. .+|..++++.++.|++. |++++++|+||+++++|+.|+|+++.+++.
T Consensus 186 d~~~~~~l~~Ll~~l~~~---~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~ 262 (418)
T PRK14336 186 DLPEKPCLADLLSALHDI---PGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYR 262 (418)
T ss_pred CCCCcccHHHHHHHHHhc---CCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHH
Confidence 23577788777653 222345554 48999999999999995 499999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc
Q 012112 203 EAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 203 ~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~ 264 (471)
++++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.++.|++.|||++++.+
T Consensus 263 ~~i~~lr~~~pgi~-i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~ 325 (418)
T PRK14336 263 ELVERLKTAMPDIS-LQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDM 325 (418)
T ss_pred HHHHHHHhhCCCCE-EEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhC
Confidence 999999999 885 9999999999999999999999999999999999999999999998643
No 44
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.93 E-value=6.4e-25 Score=230.09 Aligned_cols=182 Identities=18% Similarity=0.223 Sum_probs=150.2
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC-----CHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV-----PPRFVSSIL 137 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l-----~~~~l~~ll 137 (471)
|+++|+||..+...+ ..+.+.++.+++||+.+.+. .++.|+|.|.+.+.. ....+.+|+
T Consensus 149 C~~~CsfC~~~~~~g-----------~~r~r~~e~Vv~Ei~~l~~~-----g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll 212 (429)
T TIGR00089 149 CDKFCTYCIVPYARG-----------RERSRPPEDILEEVKELVSK-----GVKEIVLLGQNVGAYGKDLKGETNLADLL 212 (429)
T ss_pred cCCCCCcCceecccC-----------CCCCCCHHHHHHHHHHHHHC-----CCceEEEEeeccccccCCCCCCcCHHHHH
Confidence 999999999876431 24456688999999987643 256677766554332 113577788
Q ss_pred HHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC--
Q 012112 138 DTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG-- 212 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G-- 212 (471)
+.+.+.-+ ...+.+. .+|..++++.++.|+++| ++++++|+||+|+++|+.|+|+++.+++.++++.++++|
T Consensus 213 ~~l~~~~g---~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~ 289 (429)
T TIGR00089 213 RELSKIDG---IERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPD 289 (429)
T ss_pred HHHhcCCC---CCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 87765322 2245554 489899999999999995 999999999999999999999999999999999999998
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~ 264 (471)
+. ++.|+|+|+||||.+++.++++++.+++++++++|.|++.|||+++++.
T Consensus 290 i~-i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~ 340 (429)
T TIGR00089 290 AA-ITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMK 340 (429)
T ss_pred CE-EEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCC
Confidence 64 9999999999999999999999999999999999999999999999763
No 45
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2e-24 Score=229.29 Aligned_cols=192 Identities=16% Similarity=0.220 Sum_probs=157.4
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC-----
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL----- 127 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~----- 127 (471)
...||.|-= |+++|+||..+...+ ..+.+.++.+++||+.+.+. .+..|.|.|.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG-----------~~rsr~~e~Vv~Ei~~l~~~-----g~~ei~l~d~n~~~yG~d~ 220 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRG-----------KEKDRRPGDILAEVQALVDE-----GVLEVTLLGQNVNAYGVSF 220 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCC-----------CcccCCHHHHHHHHHHHHHC-----CCceEEEEeecccccccCC
Confidence 346777766 999999999876532 23456679999999987653 26777776665543
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAI 205 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai 205 (471)
.+...+.+|++.+...-++ ....|+. .+|..+++|.++.|+++| ++.|++|+||++|++|+.|+|+|+.+++.+++
T Consensus 221 ~~~~~l~~Ll~~l~~i~~l-~~ir~~~-~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v 298 (502)
T PRK14326 221 GDRGAFSKLLRACGEIDGL-ERVRFTS-PHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGIL 298 (502)
T ss_pred CCHHHHHHHHHHHHhcCCc-cEEEEec-cChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHH
Confidence 2445677777777654222 1234432 489999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc
Q 012112 206 EIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 206 ~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~ 264 (471)
+.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.+|.|++.|||+++++.
T Consensus 299 ~~lr~~~~~i~-i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 299 EKVRAAMPDAA-ITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred HHHHHhCCCCe-EEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCc
Confidence 999997 665 9999999999999999999999999999999999999999999999764
No 46
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2.9e-24 Score=223.92 Aligned_cols=192 Identities=19% Similarity=0.264 Sum_probs=155.5
Q ss_pred CCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC-
Q 012112 52 SPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP- 129 (471)
Q Consensus 52 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~- 129 (471)
+....||.|-= |+++|+||..+...++ .+.+.++.+++|++..... +++.|+|.|.+.+...
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~-----------~~sr~~e~I~~Ei~~l~~~-----G~keI~l~~~~~~~yg~ 188 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGK-----------EISIPMDLILKEAEKAVNN-----GAKEIFLLGQNVNNYGK 188 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCC-----------CCCCCHHHHHHHHHHHHHC-----CCcEEEEeeeccccccC
Confidence 34567888777 9999999998865321 2235688999999876542 3677777765543211
Q ss_pred -------HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHC--CCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 130 -------PRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDL--GVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 130 -------~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~--GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
...+.+|++.+.+.-+ ...+.+. .+|..++++.++.|+++ |+..++||+||++|++|+.|+|+++.+
T Consensus 189 d~~~~~~~~~l~~Ll~~l~~~~g---~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~ 265 (420)
T PRK14339 189 RFSSEHEKVDFSDLLDKLSEIEG---LERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKE 265 (420)
T ss_pred CCcCCcccccHHHHHHHHhcCCC---ccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHH
Confidence 1247777777764212 1235543 58989999999999998 699999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 200 EVYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 200 ~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
++.++++.++++ |+. +..|+|+|+||||.++++++++++.+++++++.+|.|++.|||+++++
T Consensus 266 ~~~~~v~~lr~~~p~i~-i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~ 330 (420)
T PRK14339 266 WFLNRAEKLRALVPEVS-ISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAW 330 (420)
T ss_pred HHHHHHHHHHHHCCCCE-EEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhC
Confidence 999999999998 665 899999999999999999999999999999999999999999999876
No 47
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.92 E-value=8e-23 Score=191.69 Aligned_cols=207 Identities=36% Similarity=0.623 Sum_probs=174.3
Q ss_pred EEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 56 AYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 56 lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
+++++.- |+.+|.||...... .. .....++.+.++++...........++.++|+||+|.+.+.+.+.
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~----------~~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~ 71 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSAR----------GK-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLE 71 (216)
T ss_pred cEEEecCchhccCCcCCcCccc----------cc-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHH
Confidence 4555555 99999999986542 12 456678888888887643321111478999999999987777799
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC-C
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG-V 213 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G-~ 213 (471)
++++.+++.........+++.+|+..++++.++.|+++|+++++++++|+++++.+.++++.+.+++.++++.++++| +
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 151 (216)
T smart00729 72 ELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPI 151 (216)
T ss_pred HHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCc
Confidence 999999987654335789999999889999999999999999999999999999999999999999999999999999 6
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHH
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQ 276 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~ 276 (471)
. +++.+|+|+|+++.+++.+.++++.++++++|.++.+.+.|||++++.... ...++..+
T Consensus 152 ~-v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~~~--~~~~~~~~ 211 (216)
T smart00729 152 K-VSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR--LKPPDKEE 211 (216)
T ss_pred c-eEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhccc--CCCCChhh
Confidence 5 999999999999999999999999999999999999999999999988654 44454443
No 48
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.91 E-value=3.8e-23 Score=216.66 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=152.2
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCC----
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSL---- 127 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~---- 127 (471)
...||++-- |+++|+||..+... | ..+.+.++.+++||+.+.+.. ++.|+|.| .+...
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~-G----------~~r~r~~e~Vv~Ei~~l~~~g-----~k~i~~~~~d~~~~g~d~ 198 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIR-G----------KLRSRPIEEILKEAERLVDQG-----VKEIILIAQDTTAYGKDL 198 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeeccc-C----------CceecCHHHHHHHHHHHHHCC-----CcEEEEEeECCCccccCC
Confidence 345666665 99999999887543 1 245567889999999775432 44455433 22221
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEE-EecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISM-EMDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYEA 204 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eiti-E~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~a 204 (471)
.+.+.+.+|++.|.+.-++ ..+++ .++|..++++.++.|+++| +..+.+|+||+++++|+.|+|+++.+++.++
T Consensus 199 ~~~~~l~~Ll~~i~~~~~i---~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~ 275 (430)
T TIGR01125 199 YRESKLVDLLEELGKVGGI---YWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDF 275 (430)
T ss_pred CCcccHHHHHHHHHhcCCc---cEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHH
Confidence 2346788999988764111 12333 3689999999999999996 8999999999999999999999999999999
Q ss_pred HHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 205 IEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 205 i~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.+|.+++.|||+++++
T Consensus 276 i~~l~~~~~~i~-i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~ 335 (430)
T TIGR01125 276 IERLREKCPDAV-LRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFAL 335 (430)
T ss_pred HHHHHHhCCCCe-EeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccC
Confidence 9999998 454 889999999999999999999999999999999999999999999875
No 49
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.9e-23 Score=210.53 Aligned_cols=198 Identities=19% Similarity=0.246 Sum_probs=158.5
Q ss_pred CCCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCC---CCeeEEEEcCCCC
Q 012112 50 QLSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTS---PPLETVFFGGGTP 125 (471)
Q Consensus 50 ~~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~---~~v~~i~fGGGTp 125 (471)
.......||.|-- |.++|+||-.+...+ ..+.+.++.+++|++.+.+.+.+. ...++--+|++++
T Consensus 140 ~~~~~~A~v~I~eGCn~~CtfCiiP~~RG-----------~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~ 208 (437)
T COG0621 140 REGGVRAFVKIQEGCNKFCTFCIIPYARG-----------KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLG 208 (437)
T ss_pred cCCCeEEEEEhhcCcCCCCCeeeeeccCC-----------CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCC
Confidence 3556778888888 999999999987643 345667788999998776543210 0123344566555
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 126 SLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 126 s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
. ....|.+|++.|.+. .....+.+-. +|..++++.++++++.. ++.+.|.|||+||++|++|+|+|+.++..
T Consensus 209 ~--~~~~l~~Ll~~l~~I---~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~ 283 (437)
T COG0621 209 G--GKPNLADLLRELSKI---PGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYL 283 (437)
T ss_pred C--CccCHHHHHHHHhcC---CCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHH
Confidence 3 023577888887763 2344666665 99999999999999963 78999999999999999999999999999
Q ss_pred HHHHHHHHc-CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 203 EAIEIVKLC-GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 203 ~ai~~~~~~-G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
+.++.+|++ .--.++.|+|+|+||||.++|++|++++.+.+++++.+|.|.+.||||.+.+
T Consensus 284 ~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 284 EIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred HHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccC
Confidence 999999987 2234899999999999999999999999999999999999999999998843
No 50
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=191.62 Aligned_cols=215 Identities=16% Similarity=0.241 Sum_probs=171.4
Q ss_pred EEEEeccC-CCcC--------CcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCC
Q 012112 55 SAYIHLPF-CRKR--------CHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTP 125 (471)
Q Consensus 55 ~lYiHIPF-C~~~--------C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTp 125 (471)
=+=+|.+| ||+| |+||.-.... . ........-.+.+.++++...+... ... -.+||...|-
T Consensus 25 Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~--d------~~~~~~~~i~~Q~~~q~~~~~kK~~-~~k-yiaYFQ~~TN 94 (312)
T COG1242 25 KVTLDGGFSCPNRDGTIGRGGCTFCSVAGSG--D------FAGQPKISIAEQFKEQAERMHKKWK-RGK-YIAYFQAYTN 94 (312)
T ss_pred EEeccCCCCCCCCCCcccCCceeeecCCCCC--c------cccCcccCHHHHHHHHHHHHHHhhc-CCc-EEEEEecccc
Confidence 35578889 9976 9999754331 0 0001111223344445553333332 122 6799999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCC---EEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 126 SLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVN---RVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 126 s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn---rvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
|.-+.+.|++..+..-+ .....-++|-++|+.+.++.++.|.+..-+ .|.+|+||.++++++.+||+|+.+.+.
T Consensus 95 TyApvevLre~ye~aL~---~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~ 171 (312)
T COG1242 95 TYAPVEVLREMYEQALS---EAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYV 171 (312)
T ss_pred ccCcHHHHHHHHHHHhC---cCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHH
Confidence 99998888888765433 245568899999999999999999887532 479999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHH
Q 012112 203 EAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYR 282 (471)
Q Consensus 203 ~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~ 282 (471)
+|+..+++.|++ |...+|+||||||.+++.+|++.+..++++-|-+++|.+.+||++.+++.+|++...+.++..+.--
T Consensus 172 dav~r~rkrgIk-vc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~ 250 (312)
T COG1242 172 DAVKRLRKRGIK-VCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVC 250 (312)
T ss_pred HHHHHHHHcCCe-EEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHH
Confidence 999999999997 9999999999999999999999999999999999999999999999999999999999888666443
Q ss_pred H
Q 012112 283 M 283 (471)
Q Consensus 283 ~ 283 (471)
.
T Consensus 251 d 251 (312)
T COG1242 251 D 251 (312)
T ss_pred H
Confidence 3
No 51
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.89 E-value=3.4e-22 Score=208.66 Aligned_cols=191 Identities=15% Similarity=0.210 Sum_probs=150.1
Q ss_pred CeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC--
Q 012112 53 PTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP-- 129 (471)
Q Consensus 53 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~-- 129 (471)
+...||.|-= |+++|+||..+... | ..+.+.++.+++|++.+.+. +++.|.|.|.+-+...
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~-G----------~~rsr~~e~Vl~Ei~~l~~~-----G~~ei~l~g~d~~~yg~d 195 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHAR-G----------KLASYPPEKIVEKARQLVAE-----GCKEIWITSQDTGAYGRD 195 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCC-C----------CcccCCHHHHHHHHHHHHHC-----CCeEEEEEeeccccccCC
Confidence 4556777666 99999999887542 1 24456788999999987653 2566666543322221
Q ss_pred -HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCC---CCCHHHHHHHHHCC-CCEEEEccCCCCHHHHHHcCCCCCHHHHHH
Q 012112 130 -PRFVSSILDTLTDKFGLSLDAEISME-MDPG---TFDARKMEELMDLG-VNRVSLGVQAFQDELLKSCGRAHGLKEVYE 203 (471)
Q Consensus 130 -~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~---~l~~e~l~~l~~~G-vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ 203 (471)
...+.++++.+.+. .....+.+. ++|. .++++.++.++..| ++.+++|+||+++++|+.|+|+++.+++.+
T Consensus 196 ~~~~l~~Ll~~l~~i---~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~ 272 (420)
T TIGR01578 196 IGSRLPELLRLITEI---PGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFED 272 (420)
T ss_pred CCcCHHHHHHHHHhC---CCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHH
Confidence 12467777776653 222334444 3775 35789999888655 789999999999999999999999999999
Q ss_pred HHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 204 AIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 204 ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
+++.++++ |+. ++.|+|+|+||||.++++++++++.++++++++++.|++.|||+++++
T Consensus 273 ~i~~i~~~~~~i~-i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~ 333 (420)
T TIGR01578 273 IVDKFRERFPDLT-LSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKM 333 (420)
T ss_pred HHHHHHHhCCCCE-EEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCC
Confidence 99999998 785 899999999999999999999999999999999999999999999875
No 52
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.88 E-value=1.4e-21 Score=205.02 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=147.7
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEc-CCCCC-----
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFG-GGTPS----- 126 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fG-GGTps----- 126 (471)
...||.+-- |+++|+||..+... | ..+.+.++.+++||+.+.+.. ++.|.|- ..+..
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~-G----------~~rsr~~e~Vv~Ei~~l~~~g-----~kei~l~~~d~~~yg~d~ 202 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMR-G----------DLVSRPIGDVLREAERLVKAG-----VKELLVISQDTSAYGVDV 202 (440)
T ss_pred cEEEEEeccCCCCCCccCCccccc-C----------CccccCHHHHHHHHHHHHHCC-----CceEEEEecChhhhcccc
Confidence 446666666 99999999887653 1 245677899999999875432 3334432 21110
Q ss_pred -----CC-C---HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCCCHHHHHHHHHCCCC--EEEEccCCCCHHHHHHcCC
Q 012112 127 -----LV-P---PRFVSSILDTLTDKFGLSLDAEISME-MDPGTFDARKMEELMDLGVN--RVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 127 -----~l-~---~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l~~e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R 194 (471)
++ . ...+.+|++.|.+. ++ .+.+. +.|..++++.++.|++ |+- .+.||+||+++++|+.|+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~Ll~~l~~~-~~----~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r 276 (440)
T PRK14862 203 KYRTGFWNGRPVKTRMTDLCEALGEL-GA----WVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKR 276 (440)
T ss_pred ccccccccccchhhHHHHHHHHHHhc-CC----EEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCC
Confidence 01 1 35788888888765 32 34444 4777788999999999 543 7999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhc
Q 012112 195 AHGLKEVYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 195 ~~t~~~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~ 263 (471)
.++.+++.++++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++.++.|++.|||+.+++
T Consensus 277 ~~~~~~~~~~i~~lr~~~~~i~-i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~ 346 (440)
T PRK14862 277 PASVEKTLERIKKWREICPDLT-IRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDL 346 (440)
T ss_pred CCCHHHHHHHHHHHHHHCCCce-ecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhC
Confidence 99999999999999997 676 899999999999999999999999999999999999999999998643
No 53
>PRK06256 biotin synthase; Validated
Probab=99.86 E-value=1e-20 Score=192.28 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=159.6
Q ss_pred EEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHH
Q 012112 56 AYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSS 135 (471)
Q Consensus 56 lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ 135 (471)
+++....|+.+|.||.++...... .........+.++++++...+... .--.+..||+.|.....+.+.+
T Consensus 61 ~~~~s~~C~~~C~fC~~~~~~~~~-------~~~~~~~s~eeI~~~~~~~~~~g~---~~~~l~~~g~~p~~~~~~~~~e 130 (336)
T PRK06256 61 INAKSGLCPEDCGYCSQSAGSSAP-------VYRYAWLDIEELIEAAKEAIEEGA---GTFCIVASGRGPSGKEVDQVVE 130 (336)
T ss_pred eeccCCCCCCCCccCCCcCCCCCC-------CceecCCCHHHHHHHHHHHHHCCC---CEEEEEecCCCCCchHHHHHHH
Confidence 344466799999999997643110 011222456778888876544321 1112334555565433356777
Q ss_pred HHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCe
Q 012112 136 ILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN 215 (471)
Q Consensus 136 ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~ 215 (471)
+++.+++..+ +.+.++.+.++++.++.|+++|++++.+|+|| ++++++.+++.|+.++..++++.++++|+.
T Consensus 131 ~i~~i~~~~~------i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~- 202 (336)
T PRK06256 131 AVKAIKEETD------LEICACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIE- 202 (336)
T ss_pred HHHHHHhcCC------CcEEecCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCe-
Confidence 7777776532 33445677799999999999999999999999 999999999999999999999999999997
Q ss_pred eEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 216 WSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 216 v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+++++|+|+ |||.+++.++++++.+++++.+.+..+.|.||||++.. +.++.++..++...++-.+..
T Consensus 203 v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~------~~~~~~e~l~~ia~~Rl~~p~ 270 (336)
T PRK06256 203 PCSGGIIGM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENH------PELTPLECLKTIAIFRLINPD 270 (336)
T ss_pred eccCeEEeC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC
Confidence 999999998 99999999999999999999999999999999998753 345677777777766666543
No 54
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.84 E-value=1.4e-19 Score=180.59 Aligned_cols=204 Identities=15% Similarity=0.166 Sum_probs=154.7
Q ss_pred cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEE--EEcCCCCCCCC-HHHHHHHH
Q 012112 61 PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETV--FFGGGTPSLVP-PRFVSSIL 137 (471)
Q Consensus 61 PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i--~fGGGTps~l~-~~~l~~ll 137 (471)
-.|+.+|.||.++...... ......+.++.+++|++...+. ++..+ ..+|+.|..-. .+.+.++.
T Consensus 37 ~~C~~~C~fC~~~~~~~~~-------~~~~~~~~~eei~~~~~~~~~~-----g~~~~~l~~~g~~~~~~~~~~~~~~i~ 104 (296)
T TIGR00433 37 GGCPEDCKYCSQSSRSKTG-------LPIERLKKVDEVLEEARKAKAA-----GATRFCLVASGRGPKDREFMEYVEAMV 104 (296)
T ss_pred CCCCCCCcCCCCcccCCCC-------CccccCCCHHHHHHHHHHHHHC-----CCCEEEEEEecCCCChHHHHHHHHHHH
Confidence 4499999999987642100 0112223457788888765432 24443 45566664211 12344444
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeE
Q 012112 138 DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWS 217 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~ 217 (471)
+.+++ .+ +.+.++++.+++|.++.|+++|++++++|+| +++++++.+++.|+.++..++++.++++|+. +.
T Consensus 105 ~~~~~-~~------i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~-v~ 175 (296)
T TIGR00433 105 QIVEE-MG------LKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLK-VC 175 (296)
T ss_pred HHHHh-CC------CeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCE-EE
Confidence 43332 22 2334567788999999999999999999999 8999999999999999999999999999997 99
Q ss_pred eeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 218 LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 218 ~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
+.+|+|+ ++|.+++.++++++.+++++.++++.+.|.|||++++ ...++.++..+....++..+...+
T Consensus 176 ~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~------~~~~s~~~~~~~ia~~r~~lp~~~ 243 (296)
T TIGR00433 176 SGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLAD------NKELSADDALKTIALARIIMPKAE 243 (296)
T ss_pred EeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCC------CCCCCHHHHHHHHHHHHHHCCcce
Confidence 9999998 9999999999999999999999999999999999875 346788888888888877765443
No 55
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.84 E-value=7e-20 Score=188.01 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=161.2
Q ss_pred ccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEE-cCCCCCCCCHHHHHHHHH
Q 012112 60 LPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFF-GGGTPSLVPPRFVSSILD 138 (471)
Q Consensus 60 IPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~f-GGGTps~l~~~~l~~ll~ 138 (471)
--+|+.+|.||.|.... + ........+.++++++..... +++.+.+ ||++|+..+.+++.++++
T Consensus 81 Tn~C~~~C~YC~f~~~~-~---------~~~~~ls~eEI~~~a~~~~~~-----Gv~~i~lvgGe~p~~~~~e~l~~~i~ 145 (371)
T PRK09240 81 SNYCANDCTYCGFSMSN-K---------IKRKTLDEEEIEREMAAIKKL-----GFEHILLLTGEHEAKVGVDYIRRALP 145 (371)
T ss_pred cccccCcCCcCCCCCCC-C---------CccccCCHHHHHHHHHHHHhC-----CCCEEEEeeCCCCCCCCHHHHHHHHH
Confidence 35799999999996542 1 111233567788887765432 3777755 556677778899999999
Q ss_pred HHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHHHHHcCCCe
Q 012112 139 TLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEIVKLCGVEN 215 (471)
Q Consensus 139 ~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~~~~~G~~~ 215 (471)
.|++.++ +++++++| ++.+.++.|+++|++|+++++||++++.++.+ +|.|+.++..++++.++++|+.+
T Consensus 146 ~Ik~~~p-----~i~i~~g~--lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~ 218 (371)
T PRK09240 146 IAREYFS-----SVSIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRK 218 (371)
T ss_pred HHHHhCC-----CceeccCC--CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 9988753 56777655 89999999999999999999999999999998 57899999999999999999988
Q ss_pred eEeeeecCCCCCCHHHHHHHHHHHHhCCCC------cEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 216 WSLDLISSLPHQTPQMWEESLRRTVGAQPK------HVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 216 v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~------his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
|++++|+|+ |++.++....+..+.++++. .|++-.|+|.+| ++... ...++++..++...++-.|.
T Consensus 219 v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~------~~~~~~e~l~~ia~~Rl~lP 290 (371)
T PRK09240 219 IGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPA------SIVSDKQLVQLICAFRLFLP 290 (371)
T ss_pred eceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCC------CCCCHHHHHHHHHHHHHHCc
Confidence 999999999 56888888888877777653 688889999999 86432 34677777887777777776
Q ss_pred HCCC
Q 012112 290 SAGY 293 (471)
Q Consensus 290 ~~Gy 293 (471)
..+.
T Consensus 291 ~~~i 294 (371)
T PRK09240 291 DVEI 294 (371)
T ss_pred cccc
Confidence 6554
No 56
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.82 E-value=4e-19 Score=182.24 Aligned_cols=213 Identities=14% Similarity=0.204 Sum_probs=157.2
Q ss_pred CCCeEEEEec---cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEE-cCCCCC
Q 012112 51 LSPTSAYIHL---PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFF-GGGTPS 126 (471)
Q Consensus 51 ~~~~~lYiHI---PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~f-GGGTps 126 (471)
+..+.+|+.| ..|+.+|.||.|.... + .....-..+.+.++++..... ++..+++ ||++|+
T Consensus 68 G~~v~l~~~i~~Tn~C~~~C~yC~~s~~~-~---------~~~~~Ls~eEI~~~a~~~~~~-----Gv~~i~lvgGe~p~ 132 (366)
T TIGR02351 68 GNTISLFTPLYLSNYCSNKCVYCGFSMSN-K---------IKRKKLNEEEIEREIEAIKKS-----GFKEILLVTGESEK 132 (366)
T ss_pred CCEEEEEeeeeECccccCCCCcCCCCCCC-C---------CccCcCCHHHHHHHHHHHHhC-----CCCEEEEeeCCCCC
Confidence 3445666666 6699999999996431 0 000111246666666655432 2566654 566898
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC---CCCCHHHHHH
Q 012112 127 LVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG---RAHGLKEVYE 203 (471)
Q Consensus 127 ~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~---R~~t~~~~~~ 203 (471)
..+.+++.++++.+++.++ ++++|++| ++.+.++.|+++|++|+++|+||+|++.++.+. +.|+.++..+
T Consensus 133 ~~~~e~l~eii~~Ik~~~p-----~i~Iei~~--lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~ 205 (366)
T TIGR02351 133 AAGVEYIAEAIKLAREYFS-----SLAIEVQP--LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLN 205 (366)
T ss_pred CCCHHHHHHHHHHHHHhCC-----cccccccc--CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHH
Confidence 8899999999999998763 45677765 899999999999999999999999999999975 8999999999
Q ss_pred HHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCC------CcEEEEeccccCCChhhhcccCCCCCCCCHHHH
Q 012112 204 AIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQP------KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQS 277 (471)
Q Consensus 204 ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p------~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~ 277 (471)
+++.++++|+.+|++++|+|+|+ +.++...+...+..++. ..|++-.|.|.+| ++... ...++.+.
T Consensus 206 ~i~~a~~aG~~~v~~g~i~Gl~e-~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~------~~l~~~~~ 277 (366)
T TIGR02351 206 TPERAAKAGMRKIGIGALLGLDD-WRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPK------VIVTDREL 277 (366)
T ss_pred HHHHHHHcCCCeeceeEEEeCch-hHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCC------CcCCHHHH
Confidence 99999999998899999999975 55555555555444543 5788888999988 76432 23456666
Q ss_pred HHHHHHHHHHHHHCCC
Q 012112 278 ANFYRMASSMLSSAGY 293 (471)
Q Consensus 278 ~~~~~~~~~~L~~~Gy 293 (471)
.++....+-.+...+.
T Consensus 278 ~~~i~~~R~~~P~~~i 293 (366)
T TIGR02351 278 VQIICAYRLFDPFVEI 293 (366)
T ss_pred HHHHHHHHHhCccccc
Confidence 6666666666655554
No 57
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.81 E-value=6.5e-19 Score=179.41 Aligned_cols=211 Identities=15% Similarity=0.191 Sum_probs=163.7
Q ss_pred EEeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 57 YIHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 57 YiHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.++|.+ |+.+|.||.+...... ........+.++++++..... ++..|+|.||+...++.+.+
T Consensus 40 ~~~i~~T~~C~~~C~FC~~~~~~~~---------~~~y~ls~eeI~e~~~~~~~~-----G~~~i~l~gG~~p~~~~~~~ 105 (343)
T TIGR03551 40 NRNINFTNVCYGGCGFCAFRKRKGD---------ADAYLLSLEEIAERAAEAWKA-----GATEVCIQGGIHPDLDGDFY 105 (343)
T ss_pred eeccccccccccCCccCCCccCCCC---------CCcccCCHHHHHHHHHHHHHC-----CCCEEEEEeCCCCCCCHHHH
Confidence 345665 9999999999754210 111124677888888766542 37889998887666788999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEe---------cCCCCCHHHHHHHHHCCCCEEE-EccCCCCHHHHHHcCCCC-CHHHHH
Q 012112 134 SSILDTLTDKFGLSLDAEISMEM---------DPGTFDARKMEELMDLGVNRVS-LGVQAFQDELLKSCGRAH-GLKEVY 202 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~---------~P~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l~R~~-t~~~~~ 202 (471)
.++++.|++.+ ++.+|.+.+ +.+.+++|.++.|+++|++++. .|.+++++++++.+.+.+ +.++..
T Consensus 106 ~~i~~~Ik~~~---~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~ 182 (343)
T TIGR03551 106 LDILRAVKEEV---PGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWI 182 (343)
T ss_pred HHHHHHHHHHC---CCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHH
Confidence 99999999875 234555431 4567789999999999999997 578999999999999875 999999
Q ss_pred HHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC----CChhhhcccCCCCCCCCHHHHH
Q 012112 203 EAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ----GTKFGILYTPGEFPLPTETQSA 278 (471)
Q Consensus 203 ~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p----gT~l~~~~~~g~~~~p~~~~~~ 278 (471)
++++.++++|+. ++..+|+|+| ||.++..+++.++.+++++...+..+.|.| ||++++.. ...+..+.++..
T Consensus 183 ~~i~~a~~~Gi~-v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~--~~~~~~~~~~~l 258 (343)
T TIGR03551 183 EIIKTAHKLGIP-TTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKG--MARPGPTGREDL 258 (343)
T ss_pred HHHHHHHHcCCc-ccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCcccccc--CCCCCCCHHHHH
Confidence 999999999998 8999999986 999999999999999999887777777755 99997531 111234677777
Q ss_pred HHHHHHHHHH
Q 012112 279 NFYRMASSML 288 (471)
Q Consensus 279 ~~~~~~~~~L 288 (471)
++...++-.|
T Consensus 259 r~iAv~Rl~l 268 (343)
T TIGR03551 259 KVHAIARILL 268 (343)
T ss_pred HHHHHHHHhC
Confidence 7777666555
No 58
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.80 E-value=2.4e-18 Score=159.11 Aligned_cols=179 Identities=23% Similarity=0.384 Sum_probs=147.1
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
|+.+|.||.......... ......+.+.+.+.... ...+..++++||+|...+ .+.++++.+++
T Consensus 7 C~~~C~fC~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~~i~~~ggep~~~~--~~~~~i~~~~~ 70 (204)
T cd01335 7 CNLNCGFCSNPASKGRGP---------ESPPEIEEILDIVLEAK-----ERGVEVVILTGGEPLLYP--ELAELLRRLKK 70 (204)
T ss_pred cCCcCCCCCCCCCCCCCc---------cccccHHHHHHHHHHHH-----hcCceEEEEeCCcCCccH--hHHHHHHHHHh
Confidence 999999999876532211 01111122222222222 123688999999998744 77788888877
Q ss_pred HcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeeEeeee
Q 012112 143 KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG-RAHGLKEVYEAIEIVKLCGVENWSLDLI 221 (471)
Q Consensus 143 ~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~-R~~t~~~~~~ai~~~~~~G~~~v~~DlI 221 (471)
.. .+..+++.+++..++++.++.|+++|+.++.+|++|.+++.++.++ +..+.+++.++++.+++.|+. +.+.+|
T Consensus 71 ~~---~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~i 146 (204)
T cd01335 71 EL---PGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLG-LSTTLL 146 (204)
T ss_pred hC---CCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 64 4568999999988899999999999999999999999999999998 788999999999999999997 999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeccccCCChhh
Q 012112 222 SSLPHQTPQMWEESLRRTVGAQ-PKHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 222 ~GlPgqT~e~~~~~l~~~~~l~-p~his~y~l~~~pgT~l~ 261 (471)
+|.|+++.+++.++++.+.++. ++.++++.+.+.|||+++
T Consensus 147 ~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 147 VGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred EecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 9999999999999999999998 999999999999999998
No 59
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.78 E-value=5.2e-18 Score=170.38 Aligned_cols=209 Identities=13% Similarity=0.196 Sum_probs=156.7
Q ss_pred EeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 58 IHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 58 iHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
.||+| |+.+|.||.|...... ........+.++++++..... ++..|.|.||....++.+.+.
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~---------~~~~~ls~eeI~~~~~~~~~~-----G~~~i~l~gg~~~~~~~~~~~ 72 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKD---------KDAYVLSLEEILEKVKEAVAK-----GATEVCIQGGLNPQLDIEYYE 72 (309)
T ss_pred eeecCccccccCCccCCCccCCCC---------CCcccCCHHHHHHHHHHHHHC-----CCCEEEEecCCCCCCCHHHHH
Confidence 45555 9999999999754210 111234567788888765432 367888888765456888999
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe---------cCCCCCHHHHHHHHHCCCCEEE-EccCCCCHHHHHHc-CCCCCHHHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEM---------DPGTFDARKMEELMDLGVNRVS-LGVQAFQDELLKSC-GRAHGLKEVYE 203 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~---------~P~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l-~R~~t~~~~~~ 203 (471)
++++.|++.+. ...+..-+ ..+..+++.++.|+++|++++. .|+|++++++++.+ .+..+.++..+
T Consensus 73 ~i~~~Ik~~~~---~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~ 149 (309)
T TIGR00423 73 ELFRAIKQEFP---DVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLE 149 (309)
T ss_pred HHHHHHHHHCC---CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHH
Confidence 99999998752 23343221 2333468999999999999995 79999999999988 55679999999
Q ss_pred HHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc----CCCh-hhhcccCCCCCCCCHHHHH
Q 012112 204 AIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE----QGTK-FGILYTPGEFPLPTETQSA 278 (471)
Q Consensus 204 ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~----pgT~-l~~~~~~g~~~~p~~~~~~ 278 (471)
+++.++++|++ ++..+|+|+| ||.++..+++..+.+++++...+..+.|. +||| +... ..+.++..+..
T Consensus 150 ~i~~a~~~Gi~-~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~----~~~~~~~~e~l 223 (309)
T TIGR00423 150 VIKTAHRLGIP-TTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGE----VRKGASGIDDL 223 (309)
T ss_pred HHHHHHHcCCC-ceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccC----CCCCCCHHHHH
Confidence 99999999998 8999999986 89999999999999999887666555553 5788 5321 12446777777
Q ss_pred HHHHHHHHHHH
Q 012112 279 NFYRMASSMLS 289 (471)
Q Consensus 279 ~~~~~~~~~L~ 289 (471)
++...++-.|.
T Consensus 224 r~iA~~Rl~lp 234 (309)
T TIGR00423 224 KVIAISRILLN 234 (309)
T ss_pred HHHHHHHHhcC
Confidence 77777766664
No 60
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.78 E-value=2.1e-18 Score=175.57 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=155.1
Q ss_pred EEEeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 56 AYIHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 56 lYiHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
++.+|.+ |+.+|.||.|+..... ........+.++++++...+ .++..++|.||.+..++.+.
T Consensus 41 ~~~~i~~s~~C~~~C~fC~~~~~~~~---------~~~~~ls~eei~~~~~~~~~-----~G~~~i~l~gG~~p~~~~~~ 106 (340)
T TIGR03699 41 VDRNINYTNICVVGCKFCAFYRAPGH---------PEGYVLSVEEILQKIEELVA-----YGGTQILLQGGVNPDLGLDY 106 (340)
T ss_pred eecccccchhhccCCccCCcccCCCC---------ccccCCCHHHHHHHHHHHHH-----cCCcEEEEecCCCCCCCHHH
Confidence 4455544 9999999997643210 01112345667777765543 23788899888665678899
Q ss_pred HHHHHHHHHHHc-CCCCC----cEEEEEecC-CCCCHHHHHHHHHCCCCEEE-EccCCCCHHHHHHcCC-CCCHHHHHHH
Q 012112 133 VSSILDTLTDKF-GLSLD----AEISMEMDP-GTFDARKMEELMDLGVNRVS-LGVQAFQDELLKSCGR-AHGLKEVYEA 204 (471)
Q Consensus 133 l~~ll~~l~~~~-~l~~~----~eitiE~~P-~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l~R-~~t~~~~~~a 204 (471)
+.++++.|++.+ .+... .|+...+.. +..+++.++.|+++|++++. .|+|++++++++.+.+ ..+.++..++
T Consensus 107 ~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~ 186 (340)
T TIGR03699 107 YEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEV 186 (340)
T ss_pred HHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHH
Confidence 999999998865 22210 111111111 22359999999999999998 5899999999999865 5799999999
Q ss_pred HHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc----cCCChhhhcccCCCCCCCCHHHHHHH
Q 012112 205 IEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV----EQGTKFGILYTPGEFPLPTETQSANF 280 (471)
Q Consensus 205 i~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~----~pgT~l~~~~~~g~~~~p~~~~~~~~ 280 (471)
++.++++|+. ++..+|+|+ |||.+++.+.+..+.+++++.+.+..+.| .+|||+... +.++.++..++
T Consensus 187 i~~a~~~Gi~-v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~------~~~~~~e~l~~ 258 (340)
T TIGR03699 187 METAHKLGLP-TTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKK------RPATSTEYLKV 258 (340)
T ss_pred HHHHHHcCCC-ccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCC------CCCCHHHHHHH
Confidence 9999999998 999999996 99999999999999999998766655554 269998653 34566777777
Q ss_pred HHHHHHHHH
Q 012112 281 YRMASSMLS 289 (471)
Q Consensus 281 ~~~~~~~L~ 289 (471)
...++-.|.
T Consensus 259 iA~~Rl~lp 267 (340)
T TIGR03699 259 LAISRIFLD 267 (340)
T ss_pred HHHHHHcCC
Confidence 776666653
No 61
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.76 E-value=7.6e-18 Score=171.22 Aligned_cols=210 Identities=19% Similarity=0.250 Sum_probs=150.3
Q ss_pred EEEeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 56 AYIHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 56 lYiHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
...+|++ |+.+|.||.|+..... . .....+.++++++...+. ++..+.|.||.+..+..+.
T Consensus 12 ~~~~i~~Tn~C~~~C~fC~~~~~~~~----------~-~~ls~eei~~~~~~~~~~-----G~~ei~l~gG~~p~~~~~~ 75 (336)
T PRK06245 12 RNVFIPLTYECRNRCGYCTFRRDPGQ----------P-SLLSPEEVKEILRRGADA-----GCTEALFTFGEVPDESYER 75 (336)
T ss_pred cceeeeccccccCCCccCCCcCCCCc----------c-CcCCHHHHHHHHHHHHHC-----CCCEEEEecCCCCccchhh
Confidence 3455555 9999999998764311 1 144567788888766543 2566777766653334111
Q ss_pred ---------HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC---CCCHHH
Q 012112 133 ---------VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR---AHGLKE 200 (471)
Q Consensus 133 ---------l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R---~~t~~~ 200 (471)
...+++.+++.........+...++|+.++++.++.|+++|+. +.+.+||+++.+++.++| .++.++
T Consensus 76 ~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~ 154 (336)
T PRK06245 76 IKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPEL 154 (336)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHH
Confidence 1222222222110000001223478999999999999999864 577789999999988855 556888
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC-----CCcEEEEeccccCCChhhhcccCCCCCCCCHH
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ-----PKHVSVYDLQVEQGTKFGILYTPGEFPLPTET 275 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~-----p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~ 275 (471)
..++++.+++.|+. ++.++|+|+ |||.+++.+++..+.+++ ++.++++.|.+.+||++... ..++.+
T Consensus 155 ~l~~i~~a~~~Gi~-~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~------~~~s~~ 226 (336)
T PRK06245 155 RLETIENAGKLKIP-FTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENH------PEPSLE 226 (336)
T ss_pred HHHHHHHHHHcCCc-eeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccC------CCcCHH
Confidence 99999999999998 999999999 999999999999998885 57899999999999998532 357788
Q ss_pred HHHHHHHHHHHHHHH
Q 012112 276 QSANFYRMASSMLSS 290 (471)
Q Consensus 276 ~~~~~~~~~~~~L~~ 290 (471)
+..+++..++..|..
T Consensus 227 e~l~~ia~~Rl~l~~ 241 (336)
T PRK06245 227 EMLRVVALARLILPP 241 (336)
T ss_pred HHHHHHHHHHHHCCC
Confidence 888888888877643
No 62
>PRK08445 hypothetical protein; Provisional
Probab=99.76 E-value=2.4e-17 Score=167.68 Aligned_cols=224 Identities=13% Similarity=0.179 Sum_probs=159.1
Q ss_pred eEEEEe---ccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC
Q 012112 54 TSAYIH---LPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL 127 (471)
Q Consensus 54 ~~lYiH---IPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~ 127 (471)
..+|+. |.+ |+.+|.||+|+..... .... ....+.+++.++...... ...|++.||.+..
T Consensus 37 v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~--------~~~y-~l~~eeI~~~~~~a~~~g-----~~~i~~~gg~~~~ 102 (348)
T PRK08445 37 ITTFIVDRNINYTNICWVDCKFCAFYRHLKE--------DDAY-ILSFEEIDKKIEELLAIG-----GTQILFQGGVHPK 102 (348)
T ss_pred EEEEecccccccccccccCCccCCCccCCCC--------CCCe-eCCHHHHHHHHHHHHHcC-----CCEEEEecCCCCC
Confidence 444444 665 9999999999764210 0111 113455555555443322 4577888777777
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEe--------cCCCCC-HHHHHHHHHCCCCEEE-EccCCCCHHHHHHc-CCCC
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEM--------DPGTFD-ARKMEELMDLGVNRVS-LGVQAFQDELLKSC-GRAH 196 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~--------~P~~l~-~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l-~R~~ 196 (471)
++.+.+.++++.|++.++ +..+..-. .-..++ +|.++.|+++|++++. +|+||+++++++.+ .+..
T Consensus 103 ~~~e~~~~l~~~Ik~~~p---~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~ 179 (348)
T PRK08445 103 LKIEWYENLVSHIAQKYP---TITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKL 179 (348)
T ss_pred CCHHHHHHHHHHHHHHCC---CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCC
Confidence 899999999999999874 22332211 112233 8999999999999995 89999999999999 6788
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc----ccCCChhhhcccCCCCCCC
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ----VEQGTKFGILYTPGEFPLP 272 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~----~~pgT~l~~~~~~g~~~~p 272 (471)
+.++..++++.++++|++ ++..+|+|+ |||.++..+.+..+.+++++...+..+. +.+|||++... .....+
T Consensus 180 t~~~~i~~i~~a~~~Gi~-~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~--~~~~~~ 255 (348)
T PRK08445 180 DSDRWLEVHRQAHLIGMK-STATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEI--PEIKKQ 255 (348)
T ss_pred CHHHHHHHHHHHHHcCCe-eeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccC--CCCCCC
Confidence 999999999999999998 999999997 6999999999999999998764444422 45899997532 122335
Q ss_pred CHHHHHHHHHHHHHHHHHCCCceecccc
Q 012112 273 TETQSANFYRMASSMLSSAGYRHYEISS 300 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 300 (471)
+.++..++...++-.|. ++.+...++
T Consensus 256 ~~~e~Lr~iAv~Rl~l~--~~~~i~a~~ 281 (348)
T PRK08445 256 SSNRYLRLLAVSRLFLD--NFKNIQSSW 281 (348)
T ss_pred CHHHHHHHHHHHHHhCC--CCCCccCCC
Confidence 66666666665555553 255554443
No 63
>PRK06267 hypothetical protein; Provisional
Probab=99.76 E-value=4.5e-17 Score=166.05 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=158.8
Q ss_pred CCC--cCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHH
Q 012112 62 FCR--KRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDT 139 (471)
Q Consensus 62 FC~--~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~ 139 (471)
+|+ .+|.||.++...... .......+.++.+++|++..... .++.+++.||.+ ++.+.+.++++.
T Consensus 36 ~C~l~~~C~FC~~s~~~~~i------~~~~~~~~s~eeI~eea~~~~~~-----Gv~~~~lsgG~~--~~~~el~~i~e~ 102 (350)
T PRK06267 36 YCNLKGPCKFCYMSTQKDKI------KDPLKARRRVESILAEAILMKRI-----GWKLEFISGGYG--YTTEEINDIAEM 102 (350)
T ss_pred CCcCCCCCcCCCCcccCCcc------CccccccCCHHHHHHHHHHHHHc-----CCCEEEEecCCC--CCHHHHHHHHHH
Confidence 499 899999997642100 01122345688899999876543 256677888887 578889999999
Q ss_pred HHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee
Q 012112 140 LTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 140 l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
+++.-+ ..+.++.+.++.+.+..++.+|+ ..|+||+++++++.+.+.++.++..++++.++++|+. +++.
T Consensus 103 I~~~~~------~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~-v~~g 172 (350)
T PRK06267 103 IAYIQG------CKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLK-TGIT 172 (350)
T ss_pred HHHhhC------CceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCe-eeee
Confidence 987532 12334566678877777777775 5799999999999999999999999999999999998 8999
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+|+|+ |||.+++.++++++.+++++.++++.|+|.|||++... +.++.++..++...++-.|-.
T Consensus 173 ~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~------~~~s~~e~lr~ia~~Rl~lP~ 236 (350)
T PRK06267 173 IILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENK------PSVTTLEYMNWVSSVRLNFPK 236 (350)
T ss_pred EEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCC------CCCCHHHHHHHHHHHHHHCCC
Confidence 99996 99999999999999999999999999999999998653 457888888888877776653
No 64
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.75 E-value=2.4e-17 Score=168.25 Aligned_cols=216 Identities=14% Similarity=0.215 Sum_probs=161.8
Q ss_pred EeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 58 IHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 58 iHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
.+|++ |+.+|.||+|...... .... ....+.++++++.... .++..+++.||..--++.+.+.
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~--------~~~y-~l~~eeI~~~a~~~~~-----~G~~~v~l~~G~~p~~~~~~~~ 115 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGE--------PGAY-AMSLEEIVARVKEAYA-----PGATEVHIVGGLHPNLPFEWYL 115 (351)
T ss_pred CCcccccccccCCccCceeCCCCC--------cccC-CCCHHHHHHHHHHHHH-----CCCcEEEEecCCCCCCCHHHHH
Confidence 34555 9999999999754210 0011 1235777777775543 2367778877764346788999
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe-----------cCCCCCHHHHHHHHHCCCCEEE-EccCCCCHHHHHHcCCCC-CHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEM-----------DPGTFDARKMEELMDLGVNRVS-LGVQAFQDELLKSCGRAH-GLKEV 201 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~-----------~P~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l~R~~-t~~~~ 201 (471)
++++.|++.++ ++.+.+ ..+..+++.++.|+++|++++. .|+||+++++++.+.+++ +.++.
T Consensus 116 e~i~~Ik~~~p-----~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~ 190 (351)
T TIGR03700 116 DMIRTLKEAYP-----DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERW 190 (351)
T ss_pred HHHHHHHHHCC-----CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHH
Confidence 99999998763 233332 1344578899999999999997 699999999999999875 67888
Q ss_pred HHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc----CCChhhhcccCCCCCCCCHHHH
Q 012112 202 YEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE----QGTKFGILYTPGEFPLPTETQS 277 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~----pgT~l~~~~~~g~~~~p~~~~~ 277 (471)
.++++.++++|++ ++..+|+|+ |||.++..+++..+.+++++...+..+.|. +|||+... ..+.++..+.
T Consensus 191 l~~i~~a~~~Gi~-~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~----~~~~~~~~e~ 264 (351)
T TIGR03700 191 LEIHRTAHELGLK-TNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRL----LAKGPTGLDD 264 (351)
T ss_pred HHHHHHHHHcCCC-cceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCC----CCCCCCHHHH
Confidence 9999999999998 899999998 999999999999999999988777777776 59998542 1234677788
Q ss_pred HHHHHHHHHHHHHCCCceecccc
Q 012112 278 ANFYRMASSMLSSAGYRHYEISS 300 (471)
Q Consensus 278 ~~~~~~~~~~L~~~Gy~~yeis~ 300 (471)
.++...++-.|. .+.+...++
T Consensus 265 lr~iA~~Rl~l~--~i~~i~a~w 285 (351)
T TIGR03700 265 LKTLAVSRLYLD--NIPHIKAYW 285 (351)
T ss_pred HHHHHHHHHhcC--CCCcccccc
Confidence 888877777763 256555443
No 65
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.75 E-value=5.5e-17 Score=172.13 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=145.6
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
..+|-+-- |+++|.||..+... + .......+-++.+..+++...... ...++.+++.|+.. +.....+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~-~-------~r~~~~~~v~~ei~~~~~~~~~~~--~~~~~~~f~~~~~~-~~~~~~~ 267 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHF-K-------YRRRRPERVVEEIKELIEEGGKRV--VFFVDDIFLYGSPA-LNDEKRF 267 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccc-c-------ccCCCHHHHHHHHHHHHHHhhhcC--cccccceeecCCcc-ccchhhc
Confidence 45566555 99999999987642 0 011222334444444444333221 11246677766543 2233445
Q ss_pred HHHHHHH-HHHcCCCCCcEEEEE-ecCCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHH-HHHHHH
Q 012112 134 SSILDTL-TDKFGLSLDAEISME-MDPGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYE-AIEIVK 209 (471)
Q Consensus 134 ~~ll~~l-~~~~~l~~~~eitiE-~~P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~-ai~~~~ 209 (471)
+.+...+ .....-.....+++. .+++.++ ++.++.++.+|+.++.+|+||.|+++|+.++|+++.+++.+ +++.++
T Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~ 347 (490)
T COG1032 268 ELLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAK 347 (490)
T ss_pred ccchHHHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5444333 333321223456666 7899998 99999999999999999999999999999999999999995 999999
Q ss_pred HcCCCeeEeeeecCCCCCCHHHHHHH---HHHHHhCCCC-cEEEEeccccCCChhhhcc
Q 012112 210 LCGVENWSLDLISSLPHQTPQMWEES---LRRTVGAQPK-HVSVYDLQVEQGTKFGILY 264 (471)
Q Consensus 210 ~~G~~~v~~DlI~GlPgqT~e~~~~~---l~~~~~l~p~-his~y~l~~~pgT~l~~~~ 264 (471)
++|+. +.+++|+|+||||.+++.++ ++.+.++++. +++++.+++.|||+++...
T Consensus 348 ~~~~~-~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~ 405 (490)
T COG1032 348 EHGLR-VKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMP 405 (490)
T ss_pred hCCce-eeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcc
Confidence 99997 99999999999999999999 7888889996 9999999999999998753
No 66
>PRK05481 lipoyl synthase; Provisional
Probab=99.74 E-value=1.1e-16 Score=158.90 Aligned_cols=219 Identities=13% Similarity=0.128 Sum_probs=160.0
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCC---CCC
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPS---LVP 129 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps---~l~ 129 (471)
...||.+-- |+.+|+||.++... + .....+.+++|++..... +++.|.+-||.-. -..
T Consensus 53 ~~~fi~is~GC~~~C~FC~i~~~r-~------------~s~~~eeI~~ea~~l~~~-----G~kEI~L~gg~~~d~~~~~ 114 (289)
T PRK05481 53 TATFMILGDICTRRCPFCDVATGR-P------------LPLDPDEPERVAEAVARM-----GLKYVVITSVDRDDLPDGG 114 (289)
T ss_pred eEEEEEecccccCCCCCceeCCCC-C------------CCCCHHHHHHHHHHHHHC-----CCCEEEEEEeeCCCccccc
Confidence 445665554 99999999998642 1 113456677777765442 2566776666421 124
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEM-DPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~ 207 (471)
.+.+.++++.|++.++ .. .+++ .|..+ ..+.+..++++|.+.+..+.++. +++++.|+|+++.++..++++.
T Consensus 115 ~~~l~~Ll~~I~~~~p---~i--rI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets-~~vlk~m~r~~t~e~~le~i~~ 188 (289)
T PRK05481 115 AQHFAETIRAIRELNP---GT--TIEVLIPDFRGRMDALLTVLDARPDVFNHNLETV-PRLYKRVRPGADYERSLELLKR 188 (289)
T ss_pred HHHHHHHHHHHHhhCC---Cc--EEEEEccCCCCCHHHHHHHHhcCcceeeccccCh-HHHHHHhCCCCCHHHHHHHHHH
Confidence 4688899998887653 22 2343 34333 35788888899999999999995 8999999999999999999999
Q ss_pred HHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 208 VKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 208 ~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
+++. |+. ++.|+|+|+ |||.+++.++++.+.+++++++.+++|.+ |-++.. +.| +....+.+....
T Consensus 189 ar~~~pgi~-~~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~-----~v~-~~~k~~r~~~l~ 256 (289)
T PRK05481 189 AKELHPGIP-TKSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL-----PVE-RYVTPEEFDEYK 256 (289)
T ss_pred HHHhCCCCe-EeeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC-----CCC-CcCCHHHHHHHH
Confidence 9999 997 999999999 99999999999999999999999999988 222111 222 233344566777
Q ss_pred HHHHHCCCceeccccccCCCcch
Q 012112 286 SMLSSAGYRHYEISSYGEDGYEC 308 (471)
Q Consensus 286 ~~L~~~Gy~~yeis~fa~~g~~~ 308 (471)
+...+-||..-.-.-++|..|..
T Consensus 257 ~~~~~i~~~~~~~~~~~~~~~~~ 279 (289)
T PRK05481 257 EIALELGFLHVASGPLVRSSYHA 279 (289)
T ss_pred HHHHHcCchheEecCccccchhh
Confidence 78889999766555566665543
No 67
>PRK12928 lipoyl synthase; Provisional
Probab=99.74 E-value=1.1e-16 Score=158.47 Aligned_cols=217 Identities=12% Similarity=0.167 Sum_probs=157.0
Q ss_pred CCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CCC--
Q 012112 52 SPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PSL-- 127 (471)
Q Consensus 52 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps~-- 127 (471)
....-|+.+-- |+.+|.||.++.. . . .....+.+.++++..... +++.|.+.||. ..+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~g---~-~---------~~~~~eei~~~a~~~~~~-----G~keivitg~~~dDl~d 119 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDKG---R-P---------MPLDPDEPERVAEAVAAL-----GLRYVVLTSVARDDLPD 119 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccCC---C-C---------CCCCHHHHHHHHHHHHHC-----CCCEEEEEEEeCCcccc
Confidence 45667777766 9999999999752 1 0 011234444555443322 24555555443 121
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEA 204 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~a 204 (471)
.+.+.+.++++.|++..+ .+.+++ .|+.+ ..+.|+.|+++|...+..++|| ++++++.|+|+++.++..+.
T Consensus 120 ~g~~~~~ell~~Ik~~~p-----~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~ 193 (290)
T PRK12928 120 GGAAHFVATIAAIRARNP-----GTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRRGADYQRSLDL 193 (290)
T ss_pred cCHHHHHHHHHHHHhcCC-----CCEEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCCCCCHHHHHHH
Confidence 345788999999987643 345555 67655 5789999999999999999998 59999999999999999999
Q ss_pred HHHHHHcC--CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc--cCCChhhhcccCCCCCCCCHHHHHHH
Q 012112 205 IEIVKLCG--VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV--EQGTKFGILYTPGEFPLPTETQSANF 280 (471)
Q Consensus 205 i~~~~~~G--~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~--~pgT~l~~~~~~g~~~~p~~~~~~~~ 280 (471)
++.+++.| +. ++.++|+|+ |||.+++.++++.+.+++++.+.+++|.. ....|..+.+ .|+ ..++
T Consensus 194 l~~ak~~gp~i~-~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~------~~~---~f~~ 262 (290)
T PRK12928 194 LARAKELAPDIP-TKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYW------TPE---EFEA 262 (290)
T ss_pred HHHHHHhCCCce-ecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeecc------CHH---HHHH
Confidence 99999998 87 899999999 99999999999999999999999999865 3345544432 222 2333
Q ss_pred HHHHHHHHHHCCCceeccccccCCCc
Q 012112 281 YRMASSMLSSAGYRHYEISSYGEDGY 306 (471)
Q Consensus 281 ~~~~~~~L~~~Gy~~yeis~fa~~g~ 306 (471)
|. +.-.+.||.+-+-.-+.|..|
T Consensus 263 ~~---~~~~~~g~~~~~~~p~~rssy 285 (290)
T PRK12928 263 LG---QIARELGFSHVRSGPLVRSSY 285 (290)
T ss_pred HH---HHHHHcCCceeEecCcccccc
Confidence 33 344468998877666666544
No 68
>PRK08508 biotin synthase; Provisional
Probab=99.74 E-value=9.9e-17 Score=158.71 Aligned_cols=200 Identities=14% Similarity=0.185 Sum_probs=151.4
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEc-CCC-CCCCCHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFG-GGT-PSLVPPRFVSSILDTL 140 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fG-GGT-ps~l~~~~l~~ll~~l 140 (471)
|+.+|.||.++....+. .........+.++++++...+. .+..+.+. +|. ++-...+.+.++++.|
T Consensus 17 C~~~C~FCa~~~~~~~~-------~~~y~~~s~eeI~~~a~~a~~~-----g~~~~~lv~sg~~~~~~~~e~~~ei~~~i 84 (279)
T PRK08508 17 CKEDCKYCTQSAHYKAD-------IKRYKRKDIEQIVQEAKMAKAN-----GALGFCLVTSGRGLDDKKLEYVAEAAKAV 84 (279)
T ss_pred CCCCCcCCCCcccCCCC-------CccccCCCHHHHHHHHHHHHHC-----CCCEEEEEeccCCCCcccHHHHHHHHHHH
Confidence 99999999997643111 0111123457777777654332 24556553 332 3322446677777788
Q ss_pred HHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 141 TDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 141 ~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
++.+. .+.+.+..+.+++|.++.|+++|++++.++++| .++..+.+...|+.++..++++.++++|++ +...+
T Consensus 85 k~~~p-----~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~sg~ 157 (279)
T PRK08508 85 KKEVP-----GLHLIACNGTASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEAGLG-LCSGG 157 (279)
T ss_pred HhhCC-----CcEEEecCCCCCHHHHHHHHHcCCCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCe-eccee
Confidence 76542 344555667889999999999999999999999 478888888899999999999999999997 99999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 221 ISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
|+|+ |||.++..+.+.++.+++++.|.+..+.+.+|||+.. +.++.++..++...++-+|.
T Consensus 158 I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-------~~~~~~~~lr~iAv~Rl~lp 218 (279)
T PRK08508 158 IFGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-------PTLSADEALEIVRLAKEALP 218 (279)
T ss_pred EEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHCC
Confidence 9998 9999999999999999999999999999999999842 13566677777776666654
No 69
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.73 E-value=2.3e-16 Score=165.02 Aligned_cols=211 Identities=13% Similarity=0.188 Sum_probs=156.3
Q ss_pred cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEE-cCCCCCCCCHHHHHHHHHH
Q 012112 61 PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFF-GGGTPSLVPPRFVSSILDT 139 (471)
Q Consensus 61 PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~f-GGGTps~l~~~~l~~ll~~ 139 (471)
.+|+.+|.||+|..... . .....-..+.+++|++...+.+ ++.+.+ +|..|.-.+.+++.++++.
T Consensus 92 N~C~n~C~YCgfs~~n~-~--------i~r~~Ls~EEI~~ea~~~~~~G-----~~~i~LvsGe~p~~~~~eyi~e~i~~ 157 (469)
T PRK09613 92 NYCVNNCVYCGFRRSNK-E--------IKRKKLTQEEIREEVKALEDMG-----HKRLALVAGEDPPNCDIEYILESIKT 157 (469)
T ss_pred CCCCCCCccCCCccCCC-C--------CCceECCHHHHHHHHHHHHHCC-----CCEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 56999999999975421 0 1111235788888888765432 444444 7777777789999999999
Q ss_pred HHHHcCC-CCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHHHHHcCCCe
Q 012112 140 LTDKFGL-SLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEIVKLCGVEN 215 (471)
Q Consensus 140 l~~~~~l-~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~~~~~G~~~ 215 (471)
|++.+.- ..-.++++++-| +|.+.++.|+++|++++.+..||+|.+..+.+ ++.|+.++-.++++.++++|++.
T Consensus 158 I~~~~~~~g~i~~v~inig~--lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~ 235 (469)
T PRK09613 158 IYSTKHGNGEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDD 235 (469)
T ss_pred HHHhccccCcceeeEEEeec--CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 9875421 112367777655 89999999999999999999999999999998 55799999999999999999988
Q ss_pred eEeeeecCCCCCCHHHHHHHHHHHHhC------CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 216 WSLDLISSLPHQTPQMWEESLRRTVGA------QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 216 v~~DlI~GlPgqT~e~~~~~l~~~~~l------~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
|++..|+||+++..|. ...+..+..| +|+.||+-.|.|.+|||+... ....++++..++....+-.+-
T Consensus 236 Vg~G~L~GLge~~~E~-~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~-----~~~vsd~e~lriiA~~RL~~P 309 (469)
T PRK09613 236 VGIGVLFGLYDYKFEV-LGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENF-----PYLVSDEDFKKIVAILRLAVP 309 (469)
T ss_pred eCeEEEEcCCCCHHHH-HHHHHHHHHHHHhhCCCCccccccceecCCCCCcccC-----CCCCCHHHHHHHHHHHHHHCC
Confidence 9999999997755543 3335444444 788899999999999998432 112466666666666555555
Q ss_pred HCCC
Q 012112 290 SAGY 293 (471)
Q Consensus 290 ~~Gy 293 (471)
..|.
T Consensus 310 ~~~I 313 (469)
T PRK09613 310 YTGM 313 (469)
T ss_pred CCCc
Confidence 4444
No 70
>PRK00955 hypothetical protein; Provisional
Probab=99.73 E-value=1.7e-16 Score=169.29 Aligned_cols=205 Identities=19% Similarity=0.149 Sum_probs=142.1
Q ss_pred CCCCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEE-EcCCCCC
Q 012112 49 PQLSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVF-FGGGTPS 126 (471)
Q Consensus 49 ~~~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~-fGGGTps 126 (471)
|....+-.+|.|-- |+..|+||..+...+ ...+.+.++.+++|++.+....+ ...+ |. +||-|-+
T Consensus 287 pa~~~i~~sI~i~RGC~g~CSFCaIp~~rG----------r~~rSRs~esIv~Evk~L~~~~g-fkg~--I~DlgGptan 353 (620)
T PRK00955 287 PAIEEVKFSITSHRGCFGGCSFCAITFHQG----------RFIQSRSQESILREAKELTEMPD-FKGY--IHDVGGPTAN 353 (620)
T ss_pred CceeeEEEEEEeeCCCCCCCCCCCeecccC----------CcceecCHHHHHHHHHHHHhccC-CeEE--EEeCCCCCcc
Confidence 33445556777766 999999998876532 23457788999999997754311 0111 11 3332211
Q ss_pred C-----------------------------CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC----CCHHHHHHHHHCC
Q 012112 127 L-----------------------------VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT----FDARKMEELMDLG 173 (471)
Q Consensus 127 ~-----------------------------l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~----l~~e~l~~l~~~G 173 (471)
. .+...+.+|++.|++.-++. ...|+.-++++. .+++.++.|.+.+
T Consensus 354 ~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvk-rv~isSGIR~D~l~~~~~~~~l~eL~~~~ 432 (620)
T PRK00955 354 FRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVK-KVFIRSGIRYDYLLHDKNDEFFEELCEHH 432 (620)
T ss_pred ccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCce-EEEeecceeccccccCCcHHHHHHHHHHh
Confidence 1 13456778888887642221 122332234444 2456888888764
Q ss_pred CC-EEEEccCCCCHHHHHHcCCCCCHHHHHHH----HHHHHHcCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcE
Q 012112 174 VN-RVSLGVQAFQDELLKSCGRAHGLKEVYEA----IEIVKLCGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 174 vn-rvsiGvQS~~d~~L~~l~R~~t~~~~~~a----i~~~~~~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~hi 247 (471)
+. .+.||+||+++++|+.|+|. +.++..+. .+.++++|+. .+..|||+|+||||.++++++++++.+++++.+
T Consensus 433 vsg~L~IapESgSd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~ 511 (620)
T PRK00955 433 VSGQLKVAPEHISDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPE 511 (620)
T ss_pred cCCCceeCcCCCChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcc
Confidence 43 79999999999999999998 54544443 3556667763 488999999999999999999999999999999
Q ss_pred EEEeccccCCChhhhcccCCC
Q 012112 248 SVYDLQVEQGTKFGILYTPGE 268 (471)
Q Consensus 248 s~y~l~~~pgT~l~~~~~~g~ 268 (471)
.++.+++.|||+...++-.|.
T Consensus 512 qV~~fTP~PGT~At~Myytg~ 532 (620)
T PRK00955 512 QVQDFYPTPGTLSTTMYYTGL 532 (620)
T ss_pred eeeeeecCCCcchhhccccCC
Confidence 999999999999888765554
No 71
>PLN02389 biotin synthase
Probab=99.72 E-value=2.3e-16 Score=161.65 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=147.2
Q ss_pred CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEc-CCCCCCC---CHHHHHHHH
Q 012112 62 FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFG-GGTPSLV---PPRFVSSIL 137 (471)
Q Consensus 62 FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fG-GGTps~l---~~~~l~~ll 137 (471)
.|+.+|.||.|....... ......-..+.++++++...+. ++..+.++ +|....- .-+++.+++
T Consensus 92 ~C~~~C~fCaqs~~~~~~-------~~~~~~Ls~EeIl~~a~~~~~~-----G~~~~~ivts~rg~~~e~~~~e~i~eii 159 (379)
T PLN02389 92 GCSEDCSYCPQSSRYDTG-------VKAQKLMSKDDVLEAAKRAKEA-----GSTRFCMGAAWRDTVGRKTNFNQILEYV 159 (379)
T ss_pred CcCcCCCCCCCcccCCCC-------CcccccCCHHHHHHHHHHHHHc-----CCCEEEEEecccCCCCChhHHHHHHHHH
Confidence 499999999996542110 0111122356666666654432 24556554 1111111 224555555
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeE
Q 012112 138 DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWS 217 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~ 217 (471)
+.+++ ...++ -++.+.++++.++.|+++|++++.+.++| +++..+.+...++.++..++++.++++|+. +.
T Consensus 160 r~ik~-----~~l~i--~~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~-v~ 230 (379)
T PLN02389 160 KEIRG-----MGMEV--CCTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGIS-VC 230 (379)
T ss_pred HHHhc-----CCcEE--EECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCe-Ee
Confidence 55542 12344 36677899999999999999999999999 688888888899999999999999999997 99
Q ss_pred eeeecCCCCCCHHHHHHHHHHHHhC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 218 LDLISSLPHQTPQMWEESLRRTVGA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 218 ~DlI~GlPgqT~e~~~~~l~~~~~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
..+|+|+ |||.++..+++..+.++ .|+.|.+..|+|.||||++.. +.++..+..++...++-.|.+
T Consensus 231 sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~------~~~s~~e~lr~iAi~Rl~lP~ 298 (379)
T PLN02389 231 SGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQ------KPVEIWEMVRMIATARIVMPK 298 (379)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCC------CCCCHHHHHHHHHHHHHHCCC
Confidence 9999999 99999999999999999 689999999999999998754 346777777777766665533
No 72
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.72 E-value=1.1e-16 Score=161.49 Aligned_cols=211 Identities=17% Similarity=0.252 Sum_probs=154.9
Q ss_pred EeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CCCC-----
Q 012112 58 IHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PSLV----- 128 (471)
Q Consensus 58 iHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps~l----- 128 (471)
.||+| |+..|.||.|+... + .........+.++++++...+. ++..+.+.||. |..-
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~-g--------~~~~~~l~~eeI~~~a~~~~~~-----G~~ei~l~~G~~p~~~~~~~~ 71 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPP-G--------ELEAALLSPEEVLEILRKGAAA-----GCTEALFTFGEKPEERYPEAR 71 (322)
T ss_pred EEeccccCcCCCCccCCccccC-C--------CcccccCCHHHHHHHHHHHHHC-----CCCEEEEecCCCccccHHHHH
Confidence 45566 99999999997643 1 1112234567788887766543 24556665554 5431
Q ss_pred ----------CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--
Q 012112 129 ----------PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH-- 196 (471)
Q Consensus 129 ----------~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~-- 196 (471)
..+.+.++++.+++..++ ...++++.++++.++.|+++|+. +.+.+||+++.+++.+++.+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~i~~e~~~------~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p 144 (322)
T TIGR03550 72 EWLAEMGYDSTLEYLRELCELALEETGL------LPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSP 144 (322)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhcCC------ccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCC
Confidence 135677777777655332 23478899999999999999987 48889999999887666555
Q ss_pred --CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC-----CCcEEEEeccccCCChhhhcccCCCC
Q 012112 197 --GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ-----PKHVSVYDLQVEQGTKFGILYTPGEF 269 (471)
Q Consensus 197 --t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~-----p~his~y~l~~~pgT~l~~~~~~g~~ 269 (471)
+.++..++++.++++|+. ++.++|+|+ |||.+++.+++..+.+++ ++.+.+.++.+.||||+...
T Consensus 145 ~k~~~~~l~~i~~a~~~Gi~-~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~------ 216 (322)
T TIGR03550 145 GKDPAVRLETIEDAGRLKIP-FTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENH------ 216 (322)
T ss_pred CCCHHHHHHHHHHHHHcCCC-ccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCC------
Confidence 467899999999999998 999999997 999999999999999987 67788889999999998642
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q 012112 270 PLPTETQSANFYRMASSMLSSAGYRHYEIS 299 (471)
Q Consensus 270 ~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis 299 (471)
+.++..+..++...++-.|.. +.+..++
T Consensus 217 ~~~s~~e~lr~iAv~Rl~l~~--~~~I~~~ 244 (322)
T TIGR03550 217 PEPSLEEMLRTVAVARLILPP--DISIQVP 244 (322)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCeeecC
Confidence 346677777777666665522 4444444
No 73
>PRK15108 biotin synthase; Provisional
Probab=99.71 E-value=7.2e-16 Score=156.74 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=153.7
Q ss_pred EEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCC--CCCCCCHHHHH
Q 012112 57 YIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGG--TPSLVPPRFVS 134 (471)
Q Consensus 57 YiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGG--Tps~l~~~~l~ 134 (471)
++.--.|..+|.||.|....... ......-..+.+++.++.... .+++.+.+|+| .|+..+.+.+.
T Consensus 47 ~~~Tn~C~~~C~yC~~~~~~~~~-------~~~~~~ls~eEI~~~a~~~~~-----~G~~~i~i~~~g~~p~~~~~e~i~ 114 (345)
T PRK15108 47 SIKTGACPEDCKYCPQSSRYKTG-------LEAERLMEVEQVLESARKAKA-----AGSTRFCMGAAWKNPHERDMPYLE 114 (345)
T ss_pred EEECCCcCCCCcCCCCcccCCCC-------CCcccCCCHHHHHHHHHHHHH-----cCCCEEEEEecCCCCCcchHHHHH
Confidence 34445599999999997532100 000001123555555554432 23667777655 46555667888
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++++.+++. + .++. ++.+.++.+.++.|+++|++++.+.++| +++..+.+...|+.++..+.++.++++|+.
T Consensus 115 ~~i~~ik~~-~----i~v~--~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~ 186 (345)
T PRK15108 115 QMVQGVKAM-G----LETC--MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIK 186 (345)
T ss_pred HHHHHHHhC-C----CEEE--EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 888888753 2 3443 4466789999999999999999999999 899999998899999999999999999997
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
++..+|+|+ |||.++..+.+..+.++ .++.|.+..+.|.+|||+... +..+..+..++...++-.|
T Consensus 187 -v~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~------~~~~~~e~lr~iAi~Rl~l 254 (345)
T PRK15108 187 -VCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADN------DDVDAFDFIRTIAVARIMM 254 (345)
T ss_pred -eeeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCC------CCCCHHHHHHHHHHHHHHC
Confidence 999999999 99999999999999999 678999999999999998643 2245666777776665555
No 74
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.70 E-value=9.5e-17 Score=144.23 Aligned_cols=161 Identities=26% Similarity=0.486 Sum_probs=123.8
Q ss_pred cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHH
Q 012112 61 PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTL 140 (471)
Q Consensus 61 PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l 140 (471)
.-|+.+|.||....... .........+.+.++++..... ..+..++++||.|+..+ +. .+++..+
T Consensus 5 ~~C~~~C~fC~~~~~~~---------~~~~~~~~~e~i~~~~~~~~~~----~~~~~i~~~~gep~~~~-~~-~~~~~~~ 69 (166)
T PF04055_consen 5 RGCNLNCSFCYYPRSRR---------KNKPREMSPEEILEEIKELKQD----KGVKEIFFGGGEPTLHP-DF-IELLELL 69 (166)
T ss_dssp SEESS--TTTSTTTTCC---------TCGCEECHHHHHHHHHHHHHHH----TTHEEEEEESSTGGGSC-HH-HHHHHHH
T ss_pred cCcCccCCCCCCCccCC---------CcccccCCHHHHHHHHHHHhHh----cCCcEEEEeecCCCcch-hH-HHHHHHH
Confidence 34999999999875311 1122233455566666655211 12889999999998754 33 3444444
Q ss_pred HHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee
Q 012112 141 TDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDE-LLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 141 ~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~-~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
.+.. .....+++.+++...+++.++.++++|++++.+|+||.+++ +++.+++.++.+++.++++.++++|+.. ...
T Consensus 70 ~~~~--~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~-~~~ 146 (166)
T PF04055_consen 70 RKIK--KRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR-VII 146 (166)
T ss_dssp HHCT--CTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET-EEE
T ss_pred HHhh--ccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc-EEE
Confidence 4432 34678999999988889999999999999999999999999 9999999999999999999999999973 789
Q ss_pred eecCCCCCCHHHHHHHHHHH
Q 012112 220 LISSLPHQTPQMWEESLRRT 239 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~ 239 (471)
+|+|+||+|.+++.++++++
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999875
No 75
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.70 E-value=8.3e-16 Score=152.71 Aligned_cols=219 Identities=15% Similarity=0.201 Sum_probs=158.2
Q ss_pred CCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CCCC-
Q 012112 52 SPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PSLV- 128 (471)
Q Consensus 52 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps~l- 128 (471)
.....|+-|.- |..+|+||.++...... .. ..+.+.++++..... +++.|.+.|++ +.+-
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~--------~~----~~eei~~~a~~~~~~-----GlkevvLTsv~~ddl~d 123 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPL--------PP----DPEEPAKLAETIKDM-----GLKYVVITSVDRDDLED 123 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCC--------CC----CHHHHHHHHHHHHHC-----CCCEEEEEeecCCCccc
Confidence 44567777775 99999999997542111 01 124455666655432 25556665543 3331
Q ss_pred -CHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHH
Q 012112 129 -PPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAI 205 (471)
Q Consensus 129 -~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai 205 (471)
..+.+.++++.|++..+ + +.+++ .|+.. +.+.++.|+++|++.+..++||. +++++.|+|.++.++.++.+
T Consensus 124 ~g~~~l~~li~~I~~~~p---~--i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l 197 (302)
T TIGR00510 124 GGASHLAECIEAIREKLP---N--IKIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLL 197 (302)
T ss_pred ccHHHHHHHHHHHHhcCC---C--CEEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHH
Confidence 24678888888877542 2 34454 34322 78899999999999999999998 88999999999999999999
Q ss_pred HHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc-c-cCCChhhhcccCCCCCCCCHHHHHHHH
Q 012112 206 EIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ-V-EQGTKFGILYTPGEFPLPTETQSANFY 281 (471)
Q Consensus 206 ~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~-~-~pgT~l~~~~~~g~~~~p~~~~~~~~~ 281 (471)
+.+++. |+. +..|+|+|+ |||.+++.++++.+.+++++.+.+.+|. | .+++|+.+.+ .|+ ..++|
T Consensus 198 ~~ak~~~pgi~-~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~------~p~---~f~~~ 266 (302)
T TIGR00510 198 ERAKEYLPNLP-TKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV------SPE---EFDYY 266 (302)
T ss_pred HHHHHhCCCCe-ecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC------CHH---HHHHH
Confidence 999999 786 999999999 9999999999999999999999999975 4 4567766543 232 23334
Q ss_pred HHHHHHHHHCCCceeccccccCCCcc
Q 012112 282 RMASSMLSSAGYRHYEISSYGEDGYE 307 (471)
Q Consensus 282 ~~~~~~L~~~Gy~~yeis~fa~~g~~ 307 (471)
. +.-.+.||.+-+-.-+.|..|.
T Consensus 267 ~---~~a~~~gf~~v~~~p~vrssy~ 289 (302)
T TIGR00510 267 R---SVALEMGFLHAACGPFVRSSYH 289 (302)
T ss_pred H---HHHHHcCChheEecccchhhhh
Confidence 3 3445789998776666666543
No 76
>PRK01254 hypothetical protein; Provisional
Probab=99.66 E-value=4.9e-15 Score=157.26 Aligned_cols=199 Identities=16% Similarity=0.129 Sum_probs=148.4
Q ss_pred CCCCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEE--EcCCCC
Q 012112 49 PQLSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVF--FGGGTP 125 (471)
Q Consensus 49 ~~~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~--fGGGTp 125 (471)
|.-..+-.||-|-- |...|+||..+...+ ...+.+..+.+++|++.+.... ..+.-+. +||-|.
T Consensus 367 pA~e~i~~sV~i~RGC~g~CSFCaI~~hqG----------r~irSRS~esIL~Ea~~L~~~~---pGfKgii~DLgGpta 433 (707)
T PRK01254 367 PAYDMIRFSVNIMRGCFGGCSFCSITEHEG----------RIIQSRSEESIINEIEAIRDKV---PGFTGVISDLGGPTA 433 (707)
T ss_pred CchhheEEEEEEccCCCCCCCccccccccC----------CeeeeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCcc
Confidence 45556667887777 999999999886642 2235667899999999875321 1244444 444433
Q ss_pred CCC-----------------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC---CHHHHHHHHHC
Q 012112 126 SLV-----------------------------PPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTF---DARKMEELMDL 172 (471)
Q Consensus 126 s~l-----------------------------~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l---~~e~l~~l~~~ 172 (471)
+.. +...+.+|++.|++.=++ ..+.+-. .|.++ +++.++.|++.
T Consensus 434 N~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGV---KkVrI~SgiR~Dl~l~d~elIeel~~~ 510 (707)
T PRK01254 434 NMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGI---KKILIASGVRYDLAVEDPRYVKELVTH 510 (707)
T ss_pred ccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCc---eEEEEEcCCCccccccCHHHHHHHHHh
Confidence 322 234677777777753222 2344443 46666 48999999998
Q ss_pred CCC-EEEEccCCCCHHHHHHcCCC--CCHHHHHHHHHHHHHc-CCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcE
Q 012112 173 GVN-RVSLGVQAFQDELLKSCGRA--HGLKEVYEAIEIVKLC-GVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 173 Gvn-rvsiGvQS~~d~~L~~l~R~--~t~~~~~~ai~~~~~~-G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~hi 247 (471)
+|- .+.|++||.++++|+.|+|+ ++.+++.+.++.+++. |.+ .+..+||+|+||+|.++++++++++.+++.+.-
T Consensus 511 hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~e 590 (707)
T PRK01254 511 HVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLD 590 (707)
T ss_pred CCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcc
Confidence 876 89999999999999999998 6889999999988666 642 355699999999999999999999999998888
Q ss_pred EEEeccccC---CChhhhc
Q 012112 248 SVYDLQVEQ---GTKFGIL 263 (471)
Q Consensus 248 s~y~l~~~p---gT~l~~~ 263 (471)
.+..|+|.| +|.||..
T Consensus 591 QVQ~FTPtP~t~~T~MYyt 609 (707)
T PRK01254 591 QVQNFYPSPMANATTMYYT 609 (707)
T ss_pred eeeeeecCCCcCchHHHhc
Confidence 888899999 7877754
No 77
>PRK08444 hypothetical protein; Provisional
Probab=99.65 E-value=5.2e-15 Score=150.44 Aligned_cols=203 Identities=12% Similarity=0.204 Sum_probs=153.8
Q ss_pred EeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEc-CCCCCCCCHHHH
Q 012112 58 IHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFG-GGTPSLVPPRFV 133 (471)
Q Consensus 58 iHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fG-GGTps~l~~~~l 133 (471)
.+|++ |...|.||.|.... +. .... .-..+.+++.++...+. ++..+.+. |+.|.. +.+++
T Consensus 51 ~~In~TN~C~~~C~FCaf~~~~-~~-------~~~y-~ls~eeI~~~a~~a~~~-----G~~ei~iv~G~~p~~-~~e~y 115 (353)
T PRK08444 51 RHINPTNICADVCKFCAFSAHR-KN-------PNPY-TMSHEEILEIVKNSVKR-----GIKEVHIVSAHNPNY-GYEWY 115 (353)
T ss_pred CCcccccccccCCccCCCccCC-CC-------Cccc-cCCHHHHHHHHHHHHHC-----CCCEEEEeccCCCCC-CHHHH
Confidence 35666 99999999997542 11 1111 12345566666554332 25556654 455654 78899
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEe-----------cCCCCCHHHHHHHHHCCCCEEEE-ccCCCCHHHHHHcCCCC-CHHH
Q 012112 134 SSILDTLTDKFGLSLDAEISMEM-----------DPGTFDARKMEELMDLGVNRVSL-GVQAFQDELLKSCGRAH-GLKE 200 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~-----------~P~~l~~e~l~~l~~~Gvnrvsi-GvQS~~d~~L~~l~R~~-t~~~ 200 (471)
.++++.|++.++ .+.+-+ .-+...+|.++.|+++|++++-- |.|.|+|++.+.+...| +.++
T Consensus 116 ~e~ir~Ik~~~p-----~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~ 190 (353)
T PRK08444 116 LEIFKKIKEAYP-----NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSER 190 (353)
T ss_pred HHHHHHHHHHCC-----CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHH
Confidence 999999998763 233333 33345779999999999999988 69999999999999877 5578
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc----CCChhhhcccCCCCCCCCHHH
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE----QGTKFGILYTPGEFPLPTETQ 276 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~----pgT~l~~~~~~g~~~~p~~~~ 276 (471)
..+.++.++++|+. ++..+|||++ ||.++..+.+..+.+++.+.+.+..|.|. +|||+... +.++..+
T Consensus 191 ~~~i~~~a~~~Gi~-~~sg~l~G~g-Et~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~------~~~~~~e 262 (353)
T PRK08444 191 WLEIHKYWHKKGKM-SNATMLFGHI-ENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVE------KFPSSQE 262 (353)
T ss_pred HHHHHHHHHHcCCC-ccceeEEecC-CCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCC------CCCCHHH
Confidence 88888999999999 8999999995 99999999999999999999999998888 89998632 3467777
Q ss_pred HHHHHHHHHHHH
Q 012112 277 SANFYRMASSML 288 (471)
Q Consensus 277 ~~~~~~~~~~~L 288 (471)
..++...++-+|
T Consensus 263 ~Lr~iAi~Rl~L 274 (353)
T PRK08444 263 ILKTIAISRILL 274 (353)
T ss_pred HHHHHHHHHHhc
Confidence 777777766666
No 78
>PLN02428 lipoic acid synthase
Probab=99.64 E-value=1e-14 Score=146.76 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=146.9
Q ss_pred ccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CC--CCCHHHHHHH
Q 012112 60 LPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PS--LVPPRFVSSI 136 (471)
Q Consensus 60 IPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps--~l~~~~l~~l 136 (471)
=--|+.+|.||.+...... . ..+.+.+.+.++..... +++.+.|-+|+ .. -...+++.++
T Consensus 109 g~gCtr~CrFCav~~~~~p---------~---~~d~~Ep~~vA~~v~~~-----Glk~vvltSg~rddl~D~ga~~~~el 171 (349)
T PLN02428 109 GDTCTRGCRFCAVKTSRTP---------P---PPDPDEPENVAEAIASW-----GVDYVVLTSVDRDDLPDGGSGHFAET 171 (349)
T ss_pred cCCCCCCCCCCcCCCCCCC---------C---CCChhhHHHHHHHHHHc-----CCCEEEEEEcCCCCCCcccHHHHHHH
Confidence 3449999999999753211 0 01122222222222221 13344554443 21 2356788899
Q ss_pred HHHHHHHcCCCCCcEEEEEe-cCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC-CCCCHHHHHHHHHHHHHc--
Q 012112 137 LDTLTDKFGLSLDAEISMEM-DPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCG-RAHGLKEVYEAIEIVKLC-- 211 (471)
Q Consensus 137 l~~l~~~~~l~~~~eitiE~-~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~-R~~t~~~~~~ai~~~~~~-- 211 (471)
++.|++..+ .+.+++ .|+.+ +++.|+.|+++|++++..++|+ .+++++.++ +.++.++..++++.+++.
T Consensus 172 ir~Ir~~~P-----~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~p 245 (349)
T PLN02428 172 VRRLKQLKP-----EILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKP 245 (349)
T ss_pred HHHHHHhCC-----CcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 999987643 467777 67655 8999999999999999999997 789999999 789999999999999999
Q ss_pred CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 212 GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
|+. +...+|+|+ |||.+++.++++.+.+++++.+.+-.+. .| |+.+--+ ..+..|. .|..-.+.-.+.
T Consensus 246 Gi~-tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~P-s~~h~~v--~~~v~p~------~f~~~~~~~~~~ 313 (349)
T PLN02428 246 GLL-TKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RP-TKRHLPV--KEYVTPE------KFEFWREYGEEM 313 (349)
T ss_pred CCe-EEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CC-Ccceeee--ecccCHH------HHHHHHHHHHHc
Confidence 997 899999999 9999999999999999999999876653 23 2221111 1122222 233344455568
Q ss_pred CCceeccccccCCCcc
Q 012112 292 GYRHYEISSYGEDGYE 307 (471)
Q Consensus 292 Gy~~yeis~fa~~g~~ 307 (471)
||.+-+-.-+.|..|.
T Consensus 314 gf~~v~sgp~vrssy~ 329 (349)
T PLN02428 314 GFRYVASGPLVRSSYK 329 (349)
T ss_pred CCceEEecCcccchhh
Confidence 9988776666665543
No 79
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.63 E-value=1.2e-14 Score=144.32 Aligned_cols=208 Identities=18% Similarity=0.213 Sum_probs=154.5
Q ss_pred EEEEeccC--CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 55 SAYIHLPF--CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 55 ~lYiHIPF--C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
.--|||-. |+..|.||.+.+.. .. ........-++.++++.+...+.+. .++..+-=|=|++ -..++
T Consensus 51 ~~ii~iktg~c~edC~yC~qS~~~-~~------~~~~~~l~~~eeIle~Ak~ak~~Ga--~r~c~~aagr~~~--~~~~~ 119 (335)
T COG0502 51 STLISIKTGCCPEDCAYCSQSARY-KT------GVKARKLMEVEEILEAAKKAKAAGA--TRFCMGAAGRGPG--RDMEE 119 (335)
T ss_pred EEEEEeecCCCCCCCCCccccccC-cC------CCchhhcCCHHHHHHHHHHHHHcCC--ceEEEEEeccCCC--ccHHH
Confidence 33344444 89999999997653 11 1122333345667777766654331 2222222222222 35566
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+.++++.+++..++ ++. ++.+.++++.++.|+++|++++...++| +++..+.+--.|+.++..+.++.++++|
T Consensus 120 i~~~v~~Vk~~~~l----e~c--~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~G 192 (335)
T COG0502 120 VVEAIKAVKEELGL----EVC--ASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAG 192 (335)
T ss_pred HHHHHHHHHHhcCc----HHh--hccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcC
Confidence 77777777765443 232 5788999999999999999999999999 9999999999999999999999999999
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQ-PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~-p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
++ +....|+|+ |||.+|-.+.+..+.++. |+.|-++.|.+.|||||... +..+..+..++...++-.+
T Consensus 193 i~-vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~------~~~~~~e~lk~IA~~Ri~~ 261 (335)
T COG0502 193 IE-VCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENA------KPLDPFEFLKTIAVARIIM 261 (335)
T ss_pred Cc-cccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccC------CCCCHHHHHHHHHHHHHHC
Confidence 98 999999999 999999999999999999 99999999999999999862 3345556666666555543
No 80
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.63 E-value=9e-15 Score=150.39 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=150.2
Q ss_pred EeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCC-CCCCCCHHHH
Q 012112 58 IHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGG-TPSLVPPRFV 133 (471)
Q Consensus 58 iHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGG-Tps~l~~~~l 133 (471)
.+|.+ |+.+|.||.|..... . .... .-..+.+++.++...+. ++..+.+.|| .|..-..+++
T Consensus 62 ~~i~~Tn~C~~~C~fC~~~~~~~-~-------~~~y-~ls~eeI~~~a~~a~~~-----G~~~i~l~~G~~p~~~~~e~~ 127 (371)
T PRK07360 62 RNINFTNICEGHCGFCAFRRDEG-D-------HGAF-WLTIAEILEKAAEAVKR-----GATEVCIQGGLHPAADSLEFY 127 (371)
T ss_pred cCcccchhhhcCCccCCcccCCC-C-------CCCe-eCCHHHHHHHHHHHHhC-----CCCEEEEccCCCCCCCcHHHH
Confidence 35555 999999999976421 0 0111 12345566555554332 3677777777 5665337889
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEe-----------cCCCCCHHHHHHHHHCCCCEEE-EccCCCCHHHHHHcCCC-CCHHH
Q 012112 134 SSILDTLTDKFGLSLDAEISMEM-----------DPGTFDARKMEELMDLGVNRVS-LGVQAFQDELLKSCGRA-HGLKE 200 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~-----------~P~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l~R~-~t~~~ 200 (471)
.++++.+++.++ .+.+.+ +.+..+++.++.|+++|++++. -|.+.+++++++.+... .+.++
T Consensus 128 ~~~i~~ik~~~~-----~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~ 202 (371)
T PRK07360 128 LEILEAIKEEFP-----DIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAE 202 (371)
T ss_pred HHHHHHHHHhCC-----CcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHH
Confidence 999999988653 233332 4566788999999999999995 56788899999888775 58999
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc----CCChhhhcccCCCCCCCCHHH
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE----QGTKFGILYTPGEFPLPTETQ 276 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~----pgT~l~~~~~~g~~~~p~~~~ 276 (471)
..++++.++++|++ ++..+|+|+ |||.++..+.+..+.+++++.+.+-.+.+. +|||+...... ...++..+
T Consensus 203 ~l~~i~~a~~~Gl~-~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~--~~~~~~~~ 278 (371)
T PRK07360 203 WIEIVKTAHKLGLP-TTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRV--KGGAPGLE 278 (371)
T ss_pred HHHHHHHHHHcCCC-ceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccccc--CCCCCHHH
Confidence 99999999999998 899999998 999999999999999999998777666663 59999754211 11234444
Q ss_pred HHHHHHHHHHHH
Q 012112 277 SANFYRMASSML 288 (471)
Q Consensus 277 ~~~~~~~~~~~L 288 (471)
..++...++-.|
T Consensus 279 ~lr~iAi~Rl~l 290 (371)
T PRK07360 279 DLLLYAVSRIFL 290 (371)
T ss_pred HHHHHHHHHHhc
Confidence 466666655554
No 81
>PRK05926 hypothetical protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=148.94 Aligned_cols=214 Identities=13% Similarity=0.219 Sum_probs=152.5
Q ss_pred eccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHH
Q 012112 59 HLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSS 135 (471)
Q Consensus 59 HIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ 135 (471)
|++| |+..|.||.|.... + ......-..+.++++++.. .. ++..+++.||...-++.+.+.+
T Consensus 71 nin~Tn~C~~dC~FCaf~~~~-~--------~~~~~~ls~eeI~~~a~~a-~~-----G~~ei~iv~G~~p~~~~e~~~e 135 (370)
T PRK05926 71 YLYPTNFCQFNCTFCSFYAKP-G--------DPKGWFYTPDQLVQSIKEN-PS-----PITETHIVAGCFPSCNLAYYEE 135 (370)
T ss_pred eeecCCCCCCCCCccccccCC-C--------CcccccCCHHHHHHHHHHH-hc-----CCCEEEEEeCcCCCCCHHHHHH
Confidence 5555 99999999986532 1 0111111245666666654 21 2666777666543468899999
Q ss_pred HHHHHHHHcCCCCCcEEEEEe-cC----------CCCCHHHHHHHHHCCCCEEEE-ccCCCCHHHHHHcCC-CCCHHHHH
Q 012112 136 ILDTLTDKFGLSLDAEISMEM-DP----------GTFDARKMEELMDLGVNRVSL-GVQAFQDELLKSCGR-AHGLKEVY 202 (471)
Q Consensus 136 ll~~l~~~~~l~~~~eitiE~-~P----------~~l~~e~l~~l~~~Gvnrvsi-GvQS~~d~~L~~l~R-~~t~~~~~ 202 (471)
+++.|++.++ .+.+.+ .| +-.+++.++.|+++|++++.. |.|++++++++.+.. ..+.++..
T Consensus 136 ~i~~Ik~~~p-----~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l 210 (370)
T PRK05926 136 LFSKIKQNFP-----DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFL 210 (370)
T ss_pred HHHHHHHhCC-----CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHH
Confidence 9999998764 122221 11 224688999999999999996 699999999998864 56889999
Q ss_pred HHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc----cCCChhhhcccCCCCCCCCHHHHH
Q 012112 203 EAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV----EQGTKFGILYTPGEFPLPTETQSA 278 (471)
Q Consensus 203 ~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~----~pgT~l~~~~~~g~~~~p~~~~~~ 278 (471)
++++.++++|++ ++..+|+|+ |||.++..+.+..+.+++++.+.+-.+.| .++|+++.... .....+..+..
T Consensus 211 ~~i~~a~~~Gi~-~~sgmi~G~-gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~--~~~~~~~~~~l 286 (370)
T PRK05926 211 EIHKTAHSLGIP-SNATMLCYH-RETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLR--KMGSRHSIPPA 286 (370)
T ss_pred HHHHHHHHcCCc-ccCceEEeC-CCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCccccccc--ccCCCChHHHH
Confidence 999999999998 777788885 99999999999999999999999999887 66898764210 11123444556
Q ss_pred HHHHHHHHHHHHCCCceecc
Q 012112 279 NFYRMASSMLSSAGYRHYEI 298 (471)
Q Consensus 279 ~~~~~~~~~L~~~Gy~~yei 298 (471)
++...++-+|. .+.+...
T Consensus 287 r~~AvaRl~l~--n~~~iqa 304 (370)
T PRK05926 287 SIIAVARLFLD--NFPNIKA 304 (370)
T ss_pred HHHHHHHHhcC--CCccccc
Confidence 67766666653 3544433
No 82
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.58 E-value=3.8e-13 Score=130.57 Aligned_cols=219 Identities=19% Similarity=0.298 Sum_probs=166.6
Q ss_pred CCCCeEEEEeccC--CC----cCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCC
Q 012112 50 QLSPTSAYIHLPF--CR----KRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGG 123 (471)
Q Consensus 50 ~~~~~~lYiHIPF--C~----~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGG 123 (471)
..+.-++++-+|- |. ..|.+|+++....+. ....+.++.++...+........ ..+-.||-.|
T Consensus 42 g~~~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~--------~vs~E~l~~qfd~~~~k~~~~~~--~~~vkIFTSG- 110 (358)
T COG1244 42 GYPGKSLTVILRTRGCRWYREGGCYMCGYPADSAGE--------PVSEENLINQFDEAYSKYEGKFD--EFVVKIFTSG- 110 (358)
T ss_pred CCcCceEEEEEecCCcceeccCCcceeccccccCCC--------CCCHHHHHHHHHHHHHHhcccCC--CceEEEEccc-
Confidence 3456678888887 55 459999988653221 23456677777777776653322 2245566555
Q ss_pred CCCCCCHH-----HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CCC-EEEEccCCCCHHHH-HHcCC
Q 012112 124 TPSLVPPR-----FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GVN-RVSLGVQAFQDELL-KSCGR 194 (471)
Q Consensus 124 Tps~l~~~-----~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--Gvn-rvsiGvQS~~d~~L-~~l~R 194 (471)
|+|++. ....+++.|.+. ....++.+|.+|+.+++|.|+.+++. |.. .|.||+||+||++. ..+|+
T Consensus 111 --SFLD~~EVP~e~R~~Il~~is~~---~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINK 185 (358)
T COG1244 111 --SFLDPEEVPREARRYILERISEN---DNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINK 185 (358)
T ss_pred --ccCChhhCCHHHHHHHHHHHhhc---cceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhc
Confidence 456654 445566666543 33469999999999999999999998 754 89999999999998 67999
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH----HHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCC
Q 012112 195 AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ----MWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP 270 (471)
Q Consensus 195 ~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e----~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~ 270 (471)
+.|.+++.+|++.++++|+. +.+.|++-.|--|+. |+..+++ +.+-+.+.||+.+-++..||-+...+++|.+.
T Consensus 186 GftF~df~~A~~~ir~~g~~-vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YR 263 (358)
T COG1244 186 GFTFEDFVRAAEIIRNYGAK-VKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYR 263 (358)
T ss_pred CCcHHHHHHHHHHHHHcCCc-eeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHHHHcCCCC
Confidence 99999999999999999998 999999999987764 4455555 55667899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 012112 271 LPTETQSANFYRMASS 286 (471)
Q Consensus 271 ~p~~~~~~~~~~~~~~ 286 (471)
+|.-....+....+.+
T Consensus 264 PPwLWSivEVL~~~~~ 279 (358)
T COG1244 264 PPWLWSIVEVLREAKK 279 (358)
T ss_pred CchHHHHHHHHHHHHh
Confidence 9987666665554433
No 83
>PRK05927 hypothetical protein; Provisional
Probab=99.56 E-value=3.9e-14 Score=144.06 Aligned_cols=210 Identities=15% Similarity=0.190 Sum_probs=148.9
Q ss_pred eccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHH
Q 012112 59 HLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSS 135 (471)
Q Consensus 59 HIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ 135 (471)
||.| |..+|.||.|.... +. .....-..+.+++.++..... ++..+.|.||...-.+.+++.+
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~-~~--------~~~y~ls~eei~~~a~~~~~~-----G~~~i~i~gG~~p~~~~e~~~~ 113 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKP-HS--------SDAYLLSFDEFRSLMQRYVSA-----GVKTVLLQGGVHPQLGIDYLEE 113 (350)
T ss_pred CCccchhhhcCCccCCccCCC-CC--------ccccccCHHHHHHHHHHHHHC-----CCCEEEEeCCCCCCCCHHHHHH
Confidence 5555 99999999997632 10 010111235555555544332 2556667677643368899999
Q ss_pred HHHHHHHHcC-CCC----CcEEE-EEecCCCCCHHHHHHHHHCCCCEEEE-ccCCCCHHHHHHcCCCC-CHHHHHHHHHH
Q 012112 136 ILDTLTDKFG-LSL----DAEIS-MEMDPGTFDARKMEELMDLGVNRVSL-GVQAFQDELLKSCGRAH-GLKEVYEAIEI 207 (471)
Q Consensus 136 ll~~l~~~~~-l~~----~~eit-iE~~P~~l~~e~l~~l~~~Gvnrvsi-GvQS~~d~~L~~l~R~~-t~~~~~~ai~~ 207 (471)
+++.|++.++ +.. .+|++ +..+.+..++|.++.|+++|+.++-= |.|++++.+.+.+.... +.++..+.++.
T Consensus 114 ~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~ 193 (350)
T PRK05927 114 LVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKL 193 (350)
T ss_pred HHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHH
Confidence 9999998763 321 12222 12346788999999999999988875 89999999999988754 67999999999
Q ss_pred HHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc----CCChhhhcccCCCCCCCCHHHHHHHHHH
Q 012112 208 VKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE----QGTKFGILYTPGEFPLPTETQSANFYRM 283 (471)
Q Consensus 208 ~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~----pgT~l~~~~~~g~~~~p~~~~~~~~~~~ 283 (471)
|++.|++ ++..+|||+ |||.++..+.+..+.+++-+...+-.+.+. +|||+.... ...++.++..++...
T Consensus 194 A~~lGi~-~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~----~~~~s~~e~Lr~iAv 267 (350)
T PRK05927 194 AHRLGFR-STATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRV----PHQASPELYYRILAV 267 (350)
T ss_pred HHHcCCC-cCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCC----CCCCCHHHHHHHHHH
Confidence 9999998 899999999 999999999999999998443334434432 479986421 113566677777666
Q ss_pred HHHHH
Q 012112 284 ASSML 288 (471)
Q Consensus 284 ~~~~L 288 (471)
++-+|
T Consensus 268 ~Rl~l 272 (350)
T PRK05927 268 ARIFL 272 (350)
T ss_pred HHHhC
Confidence 65554
No 84
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=1.6e-13 Score=133.33 Aligned_cols=181 Identities=19% Similarity=0.324 Sum_probs=141.9
Q ss_pred HHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----------------CCCCcEEEEEecCCCCCHH
Q 012112 102 IIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFG-----------------LSLDAEISMEMDPGTFDAR 164 (471)
Q Consensus 102 i~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~-----------------l~~~~eitiE~~P~~l~~e 164 (471)
++++.+....-..++.|..| ||+-.|+.++-..++..|...+. .....-||||++|+.....
T Consensus 159 v~QLk~LGHsvDKVE~i~MG-GTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~ 237 (554)
T KOG2535|consen 159 VEQLKQLGHSVDKVEFIVMG-GTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKR 237 (554)
T ss_pred HHHHHHhCCccceeEEEEec-ceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCcccchhh
Confidence 34443333223457777775 68888888877777766655321 2234689999999999999
Q ss_pred HHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHH-HHHHHHHHH--h
Q 012112 165 KMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM-WEESLRRTV--G 241 (471)
Q Consensus 165 ~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~-~~~~l~~~~--~ 241 (471)
.|..|-..||+|+.|||||.-+++-+.-||+||.+.+-+....++++||+ |-..+|-.||+-..|- +++-.++.. +
T Consensus 238 Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~K-vV~HMMPdLPNVg~eRDieqF~E~FenP~ 316 (554)
T KOG2535|consen 238 HLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFK-VVAHMMPDLPNVGMERDIEQFKEYFENPA 316 (554)
T ss_pred hHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCce-eehhhCCCCCCCchhhhHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999999998 8999999999976543 333333332 2
Q ss_pred CCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHH
Q 012112 242 AQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMA 284 (471)
Q Consensus 242 l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~ 284 (471)
+.+|.+-+|+-.+..||-++.+++.|++.--+.+...++...+
T Consensus 317 FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArI 359 (554)
T KOG2535|consen 317 FRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARI 359 (554)
T ss_pred cCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHH
Confidence 5789999999999999999999999998876666666655443
No 85
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.53 E-value=7.1e-13 Score=133.73 Aligned_cols=195 Identities=17% Similarity=0.211 Sum_probs=142.5
Q ss_pred ccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHH
Q 012112 60 LPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDT 139 (471)
Q Consensus 60 IPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~ 139 (471)
-.-|+.+|.||.-.... +.. .......+-+++++++|+.. ..+..|.|+||.|.+++.+.+.++++.
T Consensus 95 T~~C~~~Cr~C~r~~~~-~~~-----~~~~l~~~e~~~~i~~i~~~-------~~I~~VilSGGDPl~~~~~~L~~ll~~ 161 (321)
T TIGR03822 95 VHVCPVYCRFCFRREMV-GPE-----GLGVLSPAELDAAFAYIADH-------PEIWEVILTGGDPLVLSPRRLGDIMAR 161 (321)
T ss_pred cCCCCCcCcCCCchhhc-CCc-----ccCcCCHHHHHHHHHHHHhC-------CCccEEEEeCCCcccCCHHHHHHHHHH
Confidence 34499999999754321 110 00111123344455555421 237789999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEEe-----cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 140 LTDKFGLSLDAEISMEM-----DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 140 l~~~~~l~~~~eitiE~-----~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+++. + ....+++.+ +|..++++.++.|+++|+ .+.|++++.+++.+ .+++.+|++.++++|+.
T Consensus 162 l~~i-~--~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 162 LAAI-D--HVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIP 229 (321)
T ss_pred HHhC-C--CccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCE
Confidence 9873 2 122345543 788899999999999995 48999999987654 37899999999999998
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
..+-..++.-.+++.+++.+.++++.++++....+|.+.+.+||..++ .+.++..+++..+...+
T Consensus 230 v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~---------~~~~~~~~i~~~l~~~~ 294 (321)
T TIGR03822 230 MVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFR---------VTIEEGQALVRALRGRI 294 (321)
T ss_pred EEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCccccc---------CcHHHHHHHHHHHHHhC
Confidence 445455665569999999999999999999999999999999986543 34556666676665543
No 86
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.53 E-value=3e-12 Score=132.28 Aligned_cols=180 Identities=16% Similarity=0.238 Sum_probs=137.5
Q ss_pred CCCCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC
Q 012112 49 PQLSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL 127 (471)
Q Consensus 49 ~~~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~ 127 (471)
....|+.++++|.. |+.+|.||.......+. ....-..-+..+++++... .+..|.|.||.|.+
T Consensus 11 ~~~~P~~l~i~iT~~CNl~C~~C~~~~~~~~~-------~~~~~~e~~~~ii~~~~~~--------g~~~v~~~GGEPll 75 (378)
T PRK05301 11 AVGPPLWLLAELTYRCPLQCPYCSNPLDLARH-------GAELSTEEWIRVLREARAL--------GALQLHFSGGEPLL 75 (378)
T ss_pred CCCCCeEEEEEecCccCcCCCCCCCccccccc-------cCCCCHHHHHHHHHHHHHc--------CCcEEEEECCccCC
Confidence 34567999999999 99999999754321110 0111112234455555322 25678899999976
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CCHHHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HGLKEVYEAIE 206 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t~~~~~~ai~ 206 (471)
.++ +.++++.+++. + ..+++.+|...++++.++.|+++|++.|+|++++.++++.+.+.+. .+.+.+.++++
T Consensus 76 -~~~-~~~il~~~~~~-g----~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~ 148 (378)
T PRK05301 76 -RKD-LEELVAHAREL-G----LYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVAR 148 (378)
T ss_pred -chh-HHHHHHHHHHc-C----CcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHH
Confidence 544 77888888753 2 3567888988899999999999999999999999999999887665 48999999999
Q ss_pred HHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 207 IVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 207 ~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
.+++.|+. |.+.. .++.++.+++.+.++++.+++++++.+..+.
T Consensus 149 ~l~~~g~~-v~i~~--vv~~~N~~~i~~~~~~~~~lgv~~i~~~~~~ 192 (378)
T PRK05301 149 LVKAHGYP-LTLNA--VIHRHNIDQIPRIIELAVELGADRLELANTQ 192 (378)
T ss_pred HHHHCCCc-eEEEE--EeecCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 99999987 55544 4688999999999999999999999876543
No 87
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.52 E-value=5.4e-13 Score=135.27 Aligned_cols=179 Identities=19% Similarity=0.262 Sum_probs=131.6
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.|.|+|-. |+.+|.||.-....... ........-+..+++++.. ..+..|.|.||.|.+ . .++
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~------~~~~ls~eei~~li~~~~~--------~Gv~~I~~tGGEPll-r-~dl 78 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLP------RDQVLSLEELAWLAQAFTE--------LGVRKIRLTGGEPLV-R-RGC 78 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCC------ccCCCCHHHHHHHHHHHHH--------CCCCEEEEECcCCCc-c-ccH
Confidence 45555555 99999999643211000 0111112223344444432 237889999999975 3 357
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.++++.+++..++ ..+++.+|...++ +.++.|+++|+++|+++++|.+++..+.+.|..+.+++.++++.++++|+
T Consensus 79 ~~li~~i~~~~~l---~~i~itTNG~ll~-~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 79 DQLVARLGKLPGL---EELSLTTNGSRLA-RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHHHHHHHhCCCC---ceEEEEeChhHHH-HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 7888888764322 2688889975554 68999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE 255 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~ 255 (471)
..|.+..++ +||++.+++.+.++++.+++++ +.+..+++.
T Consensus 155 ~~v~in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~ 194 (329)
T PRK13361 155 ERIKLNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPL 194 (329)
T ss_pred CceEEEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccC
Confidence 547777654 6899999999999999999986 556666654
No 88
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.46 E-value=1.9e-12 Score=131.37 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=130.7
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.+.|.+-- |+.+|.||......... . ..... ..+.+.+.++...+. ++..|.|.||.|.+ . ..+
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~-~----~~~~l---s~eei~~~i~~~~~~-----gi~~I~~tGGEPll-~-~~l 82 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFL-P----KEELL---SLEEIERLVRAFVAL-----GVRKVRLTGGEPLL-R-KDL 82 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCC-C----ccccC---CHHHHHHHHHHHHHC-----CCCEEEEECCCCcC-c-cCH
Confidence 44555444 99999999764310000 0 00111 122233333322221 36788899999976 3 357
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.++++.+++..+ ...+++.+|...+ .+.++.|+++|+++|.++++|++++..+.+.+..+.+++.++++.++++|+
T Consensus 83 ~~li~~i~~~~~---~~~i~itTNG~ll-~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~ 158 (331)
T PRK00164 83 EDIIAALAALPG---IRDLALTTNGYLL-ARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGL 158 (331)
T ss_pred HHHHHHHHhcCC---CceEEEEcCchhH-HHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCC
Confidence 788888876432 2478888886434 578999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCC
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQG 257 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pg 257 (471)
..|.+..++ +||.+.+++.+.++++.++++ ++.+..+++...
T Consensus 159 ~~v~i~~vv-~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~ 200 (331)
T PRK00164 159 TPVKVNAVL-MKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGE 200 (331)
T ss_pred CcEEEEEEE-ECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCC
Confidence 447777644 789999999999999999987 477777776543
No 89
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.45 E-value=2.7e-12 Score=143.20 Aligned_cols=206 Identities=17% Similarity=0.268 Sum_probs=151.0
Q ss_pred eccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CCCCCHHHHH
Q 012112 59 HLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PSLVPPRFVS 134 (471)
Q Consensus 59 HIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps~l~~~~l~ 134 (471)
+|.| |+.+|.||.|...... ........+.++++++...+. ++..+.+.||. |. ++.+.+.
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~---------~~~y~Ls~eeI~~~a~ea~~~-----G~tev~i~gG~~p~-~~~~~y~ 593 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTD---------ADAYTLSLDEVADRAWEAWVA-----GATEVCMQGGIHPE-LPGTGYA 593 (843)
T ss_pred ceecCCCCCCCCcccccccCCCC---------CCcccCCHHHHHHHHHHHHHC-----CCCEEEEecCCCCC-cCHHHHH
Confidence 5666 9999999999764211 111122456666666655432 35666665555 55 5888899
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe-cC----------CCCCHHHHHHHHHCCCCEEEE-ccCCCCHHHHHHcCC-CCCHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEM-DP----------GTFDARKMEELMDLGVNRVSL-GVQAFQDELLKSCGR-AHGLKEV 201 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~-~P----------~~l~~e~l~~l~~~Gvnrvsi-GvQS~~d~~L~~l~R-~~t~~~~ 201 (471)
++++.|++.++ .+.+.+ .| +..++|.++.|+++|++++-- |-+-+++++.+.+.. ..+.++.
T Consensus 594 ~lir~IK~~~p-----~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~w 668 (843)
T PRK09234 594 DLVRAVKARVP-----SMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEW 668 (843)
T ss_pred HHHHHHHHhCC-----CeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHH
Confidence 99999998763 233332 12 345789999999999999966 677788888888876 4588899
Q ss_pred HHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc----cCCChhhhcccCC-CCCCCCHHH
Q 012112 202 YEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV----EQGTKFGILYTPG-EFPLPTETQ 276 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~----~pgT~l~~~~~~g-~~~~p~~~~ 276 (471)
.++++.++++|++ ++..+|||+ +||.+++.+.+..+.+++.+...+-.+.| .++||++. .| ..+.++..+
T Consensus 669 le~i~~Ah~lGi~-~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l---~~~~~~~~t~~e 743 (843)
T PRK09234 669 IEVVTTAHEVGLR-SSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYL---AGAARPGPTHRE 743 (843)
T ss_pred HHHHHHHHHcCCC-cccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCccc---ccCCCCCCCHHH
Confidence 9999999999998 999999997 79999999999999999998777666666 56888752 12 224467777
Q ss_pred HHHHHHHHHHHHH
Q 012112 277 SANFYRMASSMLS 289 (471)
Q Consensus 277 ~~~~~~~~~~~L~ 289 (471)
...+...++-+|.
T Consensus 744 ~Lr~iAvaRl~Lp 756 (843)
T PRK09234 744 NRAVHALARIMLH 756 (843)
T ss_pred HHHHHHHHHHhCC
Confidence 7777766665553
No 90
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.45 E-value=2e-11 Score=125.29 Aligned_cols=178 Identities=15% Similarity=0.233 Sum_probs=135.3
Q ss_pred CCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 51 LSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 51 ~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
..|..++++|-. |+.+|.||........ .....-..-+..+++|+... .+..|.|+||.|.+ .
T Consensus 4 ~~P~~l~ieiT~~CNl~C~~C~~~~~~~~-------~~~~l~~e~~~~ii~~~~~~--------g~~~v~~~GGEPll-~ 67 (358)
T TIGR02109 4 GPPLWLLAELTHRCPLQCPYCSNPLELAR-------RKAELTTEEWTDVLTQAAEL--------GVLQLHFSGGEPLA-R 67 (358)
T ss_pred CCCcEEEEeeccccCcCCCCCCCChhccc-------ccCCCCHHHHHHHHHHHHhc--------CCcEEEEeCccccc-c
Confidence 456889999998 9999999975421100 00111122344566665432 25678999999985 5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CCHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HGLKEVYEAIEIV 208 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t~~~~~~ai~~~ 208 (471)
+ ++.++++.+++. + ..+++.+|.-.++++.++.|+++|+++|+|++++.+++..+.+++. .+.+.+.++++.+
T Consensus 68 ~-~~~~ii~~~~~~-g----~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l 141 (358)
T TIGR02109 68 P-DLVELVAHARRL-G----LYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAV 141 (358)
T ss_pred c-cHHHHHHHHHHc-C----CeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4 477888888763 2 3577888887789999999999999999999999999998888654 4789999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
+++|+. +.+ .+.++.++.+++.+.++++.+++++++.+..+.
T Consensus 142 ~~~g~~-v~v--~~vv~~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 142 KAAGLP-LTL--NFVIHRHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred HhCCCc-eEE--EEEeccCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 999986 554 445678999999999999999999999876543
No 91
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.43 E-value=4e-12 Score=127.39 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=131.3
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.++|++-- |+.+|.||........ ........-+..+++++. . ..++.|.|.||.|.+ .+ .+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~-------~~~~ls~eei~~~i~~~~---~-----~gi~~I~~tGGEPll-~~-~l 73 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRS-------GGNELSPEEIERIVRVAS---E-----FGVRKVKITGGEPLL-RK-DL 73 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCC-------ccCcCCHHHHHHHHHHHH---H-----cCCCEEEEECccccc-cc-CH
Confidence 57777776 9999999976532110 000111112233333332 1 136778899999976 44 46
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.++++.+++. ++ ..+++.+|. .+..+.++.|+++|+++|++++.|.+++..+.+.+..+.+++.++++.++++|+
T Consensus 74 ~~iv~~l~~~-g~---~~v~i~TNG-~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~ 148 (302)
T TIGR02668 74 IEIIRRIKDY-GI---KDVSMTTNG-ILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGL 148 (302)
T ss_pred HHHHHHHHhC-CC---ceEEEEcCc-hHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCC
Confidence 6788888764 32 268888886 444688999999999999999999999999999998899999999999999998
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE 255 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~ 255 (471)
..+.+.+++ +||++.+++.+.++++.+++++ +.+..+++.
T Consensus 149 ~~v~i~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~ 188 (302)
T TIGR02668 149 TPVKLNMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPP 188 (302)
T ss_pred CcEEEEEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeEC
Confidence 657776554 7899999999999999999875 666666654
No 92
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.41 E-value=3.6e-12 Score=128.46 Aligned_cols=186 Identities=17% Similarity=0.277 Sum_probs=138.8
Q ss_pred CCcC----CcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCC----CCCCeeEEEEcC----C-CCCCCC
Q 012112 63 CRKR----CHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK----TSPPLETVFFGG----G-TPSLVP 129 (471)
Q Consensus 63 C~~~----C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~----~~~~v~~i~fGG----G-Tps~l~ 129 (471)
|+.. |+||.-+.. | ....|..+++++|++.+..... -++..+..-+++ | -| --+
T Consensus 193 C~r~~~ggCSFCtEp~~--g----------~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P-~Pn 259 (560)
T COG1031 193 CPRRVSGGCSFCTEPVR--G----------RPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVP-RPN 259 (560)
T ss_pred CcccccCCCccccCcCc--C----------CcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCC-CCC
Confidence 9987 999987643 2 2335667899999986543221 133344444432 3 23 246
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEE-ecCCCC------CHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISME-MDPGTF------DARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKE 200 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~~l------~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~ 200 (471)
|+.+++|...+++..+- -.-+.+. +||.++ +.+.++.+.+.| =|-..+|+||+|+++.+.-+=..|.++
T Consensus 260 PealekL~~Gir~~AP~--l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEE 337 (560)
T COG1031 260 PEALEKLFRGIRNVAPN--LKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEE 337 (560)
T ss_pred HHHHHHHHHHHHhhCCC--CeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHH
Confidence 89999999999986421 1122222 578776 568888888887 377999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC-------e--eEeeeecCCCCCCHHHHHHHHHHHHhC-----CCCcEEEEeccccCCChhhhc
Q 012112 201 VYEAIEIVKLCGVE-------N--WSLDLISSLPHQTPQMWEESLRRTVGA-----QPKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 201 ~~~ai~~~~~~G~~-------~--v~~DlI~GlPgqT~e~~~~~l~~~~~l-----~p~his~y~l~~~pgT~l~~~ 263 (471)
+.+|++.+.+.|-. . -.++||+||||||.|.++.+.+++.++ -+.+|.+-+..+.|||+++..
T Consensus 338 vl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 338 VLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred HHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 99999999998541 1 248899999999999999988887763 478999999999999999864
No 93
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.40 E-value=5.3e-12 Score=140.82 Aligned_cols=202 Identities=17% Similarity=0.241 Sum_probs=147.0
Q ss_pred EeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEE-cCCCCCCC-----
Q 012112 58 IHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFF-GGGTPSLV----- 128 (471)
Q Consensus 58 iHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~f-GGGTps~l----- 128 (471)
++||+ |..+|.||.|...... .....-..+.+++.++...+.. +..+.| +|-.|..-
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~---------~~~~~ls~eEIl~~a~~~~~~G-----~~e~l~t~G~~P~~~~~~~~ 138 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGK---------LEAAYLSPDEVLDIARAGAAAG-----CKEALFTLGDRPEDRWPEAR 138 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCC---------CccccCCHHHHHHHHHHHHHCC-----CCEEEEecCCCCcccccccc
Confidence 58888 9999999999754210 0111112355666555544322 333444 55557631
Q ss_pred ----------CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--
Q 012112 129 ----------PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH-- 196 (471)
Q Consensus 129 ----------~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~-- 196 (471)
..+++.++++.+++..++. ..+|++.+|.+.++.|+++|++ ..+-+++.+++..+..+-.|
T Consensus 139 ~~l~~~gy~~~~ey~~~~~~~ik~~~gl~------p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~ 211 (843)
T PRK09234 139 EWLDERGYDSTLDYVRAMAIRVLEETGLL------PHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYG 211 (843)
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCC------ceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccC
Confidence 2467778888887765543 2367788999999999999996 56778888777765433333
Q ss_pred ----CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC-----CCCcEEEEeccccCCChhhhcccCC
Q 012112 197 ----GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA-----QPKHVSVYDLQVEQGTKFGILYTPG 267 (471)
Q Consensus 197 ----t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l-----~p~his~y~l~~~pgT~l~~~~~~g 267 (471)
..++-+++++.++++|+. ++..+|+|+ |||.++..+.+..+.++ +++.+-+.+|.+.+||+|...
T Consensus 212 ~P~K~~~~RL~ti~~A~~lGi~-~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~---- 285 (843)
T PRK09234 212 SPDKDPAVRLRVLEDAGRLSVP-FTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGV---- 285 (843)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-ccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCC----
Confidence 577889999999999999 999999999 99999999999999998 466788889999999998532
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 012112 268 EFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 268 ~~~~p~~~~~~~~~~~~~~~L 288 (471)
+.++.++..++...++-.|
T Consensus 286 --~~~s~~e~Lr~iAvaRliL 304 (843)
T PRK09234 286 --PDAGLEELLATIAVARLVL 304 (843)
T ss_pred --CCCCHHHHHHHHHHHHHhC
Confidence 4577777777777766665
No 94
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.38 E-value=3.5e-11 Score=122.35 Aligned_cols=184 Identities=18% Similarity=0.251 Sum_probs=130.8
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.|.|.|-- |+.+|.||........... ........-+..+++++.. ..+..|.|.||.|.+ .+ .+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~----~~~~ls~eei~~~i~~~~~--------~gv~~V~ltGGEPll-~~-~l 76 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLP----KEELLTFEEIERLVRAFVG--------LGVRKVRLTGGEPLL-RK-DL 76 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCC----ccCCCCHHHHHHHHHHHHH--------CCCCEEEEECccccc-cC-CH
Confidence 34555444 9999999976531000000 0011111223333333322 127788999999975 43 57
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCHHHHHHHHHHHHHcC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~~~~~~ai~~~~~~G 212 (471)
.++++.+++..++ ..+++.+|.- +..+.++.|+++|+++|.|+++|++++..+.+.| ..+.+++.++++.++++|
T Consensus 77 ~~li~~i~~~~gi---~~v~itTNG~-ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G 152 (334)
T TIGR02666 77 VELVARLAALPGI---EDIALTTNGL-LLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAG 152 (334)
T ss_pred HHHHHHHHhcCCC---CeEEEEeCch-hHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcC
Confidence 7888887764332 1688888874 4467899999999999999999999999999985 679999999999999999
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
+..+.+..+ -++|.+.+++.+.++++.+++++ +.+..+++..++
T Consensus 153 ~~~v~in~v-v~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~ 196 (334)
T TIGR02666 153 LEPVKLNTV-VMRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEG 196 (334)
T ss_pred CCcEEEEEE-EeCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCC
Confidence 964666654 35889999999999999999985 777777776554
No 95
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.36 E-value=9.1e-11 Score=113.18 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=135.2
Q ss_pred EeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHH
Q 012112 58 IHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSIL 137 (471)
Q Consensus 58 iHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll 137 (471)
|...-|+.+|.||........ .......++.++++++.....+. .....|.|.||.|.+ .++.+.+++
T Consensus 20 v~~~gCnl~C~~C~~~~~~~~---------~~~~~~s~e~i~~~i~~~~~~~~--~~~~~I~~~GGEPll-~~~~~~~li 87 (235)
T TIGR02493 20 VFMQGCPLRCQYCHNPDTWDL---------KGGTEVTPEELIKEVGSYKDFFK--ASGGGVTFSGGEPLL-QPEFLSELF 87 (235)
T ss_pred EEECCCCCcCCCCCChhhccC---------CCCEECCHHHHHHHHHHhHHHHh--cCCCeEEEeCccccc-CHHHHHHHH
Confidence 666779999999975432110 00011234555556654432111 112468888999975 788888999
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCee
Q 012112 138 DTLTDKFGLSLDAEISMEMDPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENW 216 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE~~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v 216 (471)
+.+++. + ..+++.+|.-.. ..+.++.+.+ .++.+++++++.+++..+.+.+. +.+.+.++++.+++.|+. +
T Consensus 88 ~~~~~~-g----~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~-~ 159 (235)
T TIGR02493 88 KACKEL-G----IHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKP-I 159 (235)
T ss_pred HHHHHC-C----CCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCc-E
Confidence 998873 3 357788876322 1445555555 46789999999999998887655 788999999999999987 6
Q ss_pred EeeeecCCCC--CCHHHHHHHHHHHHhCC-CCcEEEEeccccCCChhhhcccCC----CCCCCCHHHHHHHHHHHH
Q 012112 217 SLDLISSLPH--QTPQMWEESLRRTVGAQ-PKHVSVYDLQVEQGTKFGILYTPG----EFPLPTETQSANFYRMAS 285 (471)
Q Consensus 217 ~~DlI~GlPg--qT~e~~~~~l~~~~~l~-p~his~y~l~~~pgT~l~~~~~~g----~~~~p~~~~~~~~~~~~~ 285 (471)
.+-.++ .|| ++.+++.+.++++.+++ +..+.+-++.+. |+..+...... ....|+.++..+....+.
T Consensus 160 ~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 160 WIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL-GVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred EEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc-cHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 666555 476 47899999999999998 456655555442 55544332221 235567666666555443
No 96
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.36 E-value=3.8e-11 Score=123.50 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=131.9
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.|-|+|-- |+.+|.||........ . .... .-..+.+.+.++.... ..+..|.|.||.|++ .+ .+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~---~---~~~~--~ls~eei~~~i~~~~~-----~Gv~~I~~tGGEPll-r~-dl 123 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVEL---T---PKSH--LLSQDEIVRLAGLFVA-----AGVDKIRLTGGEPTL-RK-DI 123 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCC---C---Cccc--cCCHHHHHHHHHHHHH-----CCCCEEEEECCCCcc-hh-hH
Confidence 34555545 9999999965421100 0 0000 0112333333332222 236788999999975 44 47
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.++++.+++..++ ..+++.+|.-.+ .+.++.|+++|+++|.+.++|.+++..+.+.|....+++.++++.++++|+
T Consensus 124 ~eli~~l~~~~gi---~~i~itTNG~lL-~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~ 199 (373)
T PLN02951 124 EDICLQLSSLKGL---KTLAMTTNGITL-SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGY 199 (373)
T ss_pred HHHHHHHHhcCCC---ceEEEeeCcchH-HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 8888888765332 247777776444 467899999999999999999999999999988888999999999999998
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChh
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKF 260 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l 260 (471)
..|.+... -++|.+.+++.+.++++.+.++ .+.+..+++..+++.
T Consensus 200 ~~vkin~v-v~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~ 244 (373)
T PLN02951 200 NPVKVNCV-VMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVW 244 (373)
T ss_pred CcEEEEEE-ecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCcc
Confidence 55665543 4678999999999999999886 488888888887753
No 97
>PTZ00413 lipoate synthase; Provisional
Probab=99.33 E-value=1.8e-10 Score=115.85 Aligned_cols=215 Identities=13% Similarity=0.215 Sum_probs=140.4
Q ss_pred EEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CCCCCH---H
Q 012112 56 AYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PSLVPP---R 131 (471)
Q Consensus 56 lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps~l~~---~ 131 (471)
.-|-=--|...|.||+...... ..+ .+... +..+.+.++.. +++.+.+..|+ +. |+. +
T Consensus 152 fmilG~~CTr~C~FCaqstg~~---p~~--lD~eE----p~~vA~av~~~--------Gl~~~VVTSv~RDD-L~D~ga~ 213 (398)
T PTZ00413 152 IMVMGDHCTRGCRFCSVKTSRK---PPP--LDPNE----PEKVAKAVAEM--------GVDYIVMTMVDRDD-LPDGGAS 213 (398)
T ss_pred eeecCCCCCCCCCCCCCCCCCC---CCC--CCHHH----HHHHHHHHHHc--------CCCEEEEEEEcCCC-CChhhHH
Confidence 3333344999999999864210 000 11222 22222222221 12334444443 33 244 4
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCHHHHHHHHHHH
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGLKEVYEAIEIV 208 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~~~~~~ai~~~ 208 (471)
++.+.++.|++. ...+.+|+-.+.+ +.+.++.|+++|++++.-.+|| .++....+.. .|+.++..+.++.+
T Consensus 214 ~~a~~I~~Ir~~-----~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~A 287 (398)
T PTZ00413 214 HVARCVELIKES-----NPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHV 287 (398)
T ss_pred HHHHHHHHHHcc-----CCCCeEEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHH
Confidence 455555555542 2357889876656 8999999999999999999999 8999999995 69999999999999
Q ss_pred HHc---CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 209 KLC---GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 209 ~~~---G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
+++ |+. +...+|+| +|||.+++.++++.+.+++++.+.+-+|... |+-+--+ .++..| + .|..-.
T Consensus 288 Ke~f~~gi~-tcSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL~P--s~~h~~V--~~yv~P---~---~F~~~~ 355 (398)
T PTZ00413 288 KEFTNGAML-TKSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYLQP--TKTRLKV--SRYAHP---K---EFEMWE 355 (398)
T ss_pred HHHhcCCce-EeeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeeccccCC--CcccCCc--eeccCH---H---HHHHHH
Confidence 987 886 77899999 5999999999999999999999988665432 1111111 111222 2 233334
Q ss_pred HHHHHCCCceeccccccCCCc
Q 012112 286 SMLSSAGYRHYEISSYGEDGY 306 (471)
Q Consensus 286 ~~L~~~Gy~~yeis~fa~~g~ 306 (471)
+.-.+.||.+-+-.-+.|..|
T Consensus 356 ~~a~~~Gf~~v~sgPlVRSSY 376 (398)
T PTZ00413 356 EEAMKMGFLYCASGPLVRSSY 376 (398)
T ss_pred HHHHHcCCceEEecCccccch
Confidence 455678998876555666544
No 98
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.5e-11 Score=122.12 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=143.5
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCC-----CCC------eeEEEEcCCCCCCCCH-
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKT-----SPP------LETVFFGGGTPSLVPP- 130 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~-----~~~------v~~i~fGGGTps~l~~- 130 (471)
|.+-|+||-.+...+ ..+.+.++.+++|+..+.+.+.+ +.. -..+-|.+..|+.+.+
T Consensus 230 CdNMCtyCiVpftrG-----------reRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~G 298 (552)
T KOG2492|consen 230 CDNMCTYCIVPFTRG-----------RERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPG 298 (552)
T ss_pred cccccceEEEeccCC-----------cccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCC
Confidence 999999998765432 23456677777777755432110 000 1111222222222211
Q ss_pred -----------HHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCC
Q 012112 131 -----------RFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAH 196 (471)
Q Consensus 131 -----------~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~ 196 (471)
-.+..|++.+...+ ++..|.+.. +|.++.+|.|+.+++.- ++-+.+.+||.|.++|+.|.|++
T Consensus 299 Fst~yK~K~gGl~Fa~LLd~vs~~~---PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgy 375 (552)
T KOG2492|consen 299 FSTVYKPKQGGLRFAHLLDQVSRAD---PEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGY 375 (552)
T ss_pred ceeeecccCCCccHHHHHHHHhhhC---cceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccC
Confidence 13567777776653 455566555 89999999999999875 67899999999999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccC
Q 012112 197 GLKEVYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTP 266 (471)
Q Consensus 197 t~~~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~ 266 (471)
+.+...+-++.+++. |.. ++.|+|.|+=|+|.++.++++-.+.+.+-+-+-.|.+...++|..|..+..
T Consensus 376 sreayl~lv~~Irs~iPgVg-lssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~d 446 (552)
T KOG2492|consen 376 SREAYLELVAHIRSMIPGVG-LSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKD 446 (552)
T ss_pred ChHhhhhHHHHHHhhCCCCc-ceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcc
Confidence 999999999999998 665 789999999999999999999999999999999999999999999987654
No 99
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.30 E-value=2e-11 Score=120.49 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=82.9
Q ss_pred EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 176 RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC--GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 176 rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
-+.+.|||.+|.+|-.|+|.+...+....++.+++. |+. |..|+|.|+||||.+||+++++.+.+.+...+.+..+.
T Consensus 300 flhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~-IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfy 378 (547)
T KOG4355|consen 300 FLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGIT-IATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFY 378 (547)
T ss_pred EEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcE-EeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcC
Confidence 368899999999999999999999999999999987 886 99999999999999999999999999999999999999
Q ss_pred ccCCChhhhc
Q 012112 254 VEQGTKFGIL 263 (471)
Q Consensus 254 ~~pgT~l~~~ 263 (471)
+.||||.+++
T Consensus 379 PRpGTPAAkm 388 (547)
T KOG4355|consen 379 PRPGTPAAKM 388 (547)
T ss_pred CCCCChHHhh
Confidence 9999999887
No 100
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.28 E-value=2.6e-10 Score=116.38 Aligned_cols=217 Identities=15% Similarity=0.204 Sum_probs=149.3
Q ss_pred CCeEEEEeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC
Q 012112 52 SPTSAYIHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV 128 (471)
Q Consensus 52 ~~~~lYiHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l 128 (471)
-.++++++|++ |..+|+||.|+... +. .+...-..+.+.++++...+. +++.|.|-||.---+
T Consensus 55 vtyv~n~~in~TN~C~~~C~fCaF~~~~-~~--------~~~y~Ls~eeI~~~~~~~~~~-----G~~Evli~gG~~p~~ 120 (370)
T COG1060 55 VTYVVNRNINYTNICVNDCTFCAFYRKP-GD--------PKAYTLSPEEILEEVREAVKR-----GITEVLIVGGEHPEL 120 (370)
T ss_pred EEEEEeecCCcchhhcCCCCccccccCC-CC--------ccccccCHHHHHHHHHHHHHc-----CCeEEEEecCcCCCc
Confidence 34689999999 99999999998653 11 111111246677777766543 367777777764445
Q ss_pred CHHHHHHHHHHHHHHcCCC-----CCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEEccCC-CCHHHHHHcC-CCCCHHH
Q 012112 129 PPRFVSSILDTLTDKFGLS-----LDAEISMEMDPGTFD-ARKMEELMDLGVNRVSLGVQA-FQDELLKSCG-RAHGLKE 200 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~-----~~~eitiE~~P~~l~-~e~l~~l~~~GvnrvsiGvQS-~~d~~L~~l~-R~~t~~~ 200 (471)
+.++.+++++.+++.|+-- ...||..-+++..++ +|.++.|+++|++.+-.|-.. +++++.+.+. ...+.+.
T Consensus 121 ~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~ 200 (370)
T COG1060 121 SLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEE 200 (370)
T ss_pred chHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHH
Confidence 8789999999999866410 011233334455554 466999999999987655544 4566666554 4569999
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC-----CCcEEEEeccccCCChhhhcccCCCCCCCCHH
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ-----PKHVSVYDLQVEQGTKFGILYTPGEFPLPTET 275 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~-----p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~ 275 (471)
.+++++.|.+.|++ .+..+++|. ++|.++....+..+.+++ +..+++-++.+..++ + .......++..
T Consensus 201 wle~~~~Ah~lGI~-~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~---~--~~~~~~~~~~~ 273 (370)
T COG1060 201 WLEIHERAHRLGIP-TTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP---L--PAEVVPEASLE 273 (370)
T ss_pred HHHHHHHHHHcCCC-ccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCC---c--cccCCCCCCHH
Confidence 99999999999999 678899998 999999999999998874 344455555565555 1 12233446667
Q ss_pred HHHHHHHHHHHHHH
Q 012112 276 QSANFYRMASSMLS 289 (471)
Q Consensus 276 ~~~~~~~~~~~~L~ 289 (471)
+...++..++-.|.
T Consensus 274 ~~l~~iAiaRi~l~ 287 (370)
T COG1060 274 QDLKAIALARIFLD 287 (370)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777766654
No 101
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=99.23 E-value=1.6e-11 Score=94.64 Aligned_cols=66 Identities=26% Similarity=0.444 Sum_probs=55.2
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
||++|++.|++|++||+.+|||++.|+++||.++.+.+.+.+++++++||++.+++
T Consensus 1 Ls~~d~~~e~i~~~LR~~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~------------------------ 56 (66)
T PF06969_consen 1 LSPEDRLREYIMLGLRCNEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDGG------------------------ 56 (66)
T ss_dssp --HHHHHHHHHHHHHHHHSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-SS------------------------
T ss_pred CCHHHHHHHHHHHHHHhHCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeCC------------------------
Confidence 58899999999999999999999999999999999999999999999999987552
Q ss_pred ceeeecCchhhc
Q 012112 445 AYFRLSDPEGFL 456 (471)
Q Consensus 445 ~~~~lt~~~G~~ 456 (471)
++++| ++|++
T Consensus 57 -~l~lT-~~G~l 66 (66)
T PF06969_consen 57 -RLRLT-EKGRL 66 (66)
T ss_dssp -EEEE--TTTGG
T ss_pred -EEEEC-cccCc
Confidence 58997 99985
No 102
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.23 E-value=6.7e-10 Score=108.02 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=141.9
Q ss_pred CeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 53 ~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
+...-++...|+.+|.||..+..... .......++.+++++........ .....|.|+||.|++ .++.
T Consensus 20 g~~~~~f~~gCnl~C~~C~~~~~~~~---------~~~~~lt~eei~~~i~~~~~~~~--~~~~~V~~sGGEPll-~~~~ 87 (246)
T PRK11145 20 GIRFITFFQGCLMRCLYCHNRDTWDT---------HGGKEVTVEELMKEVVTYRHFMN--ASGGGVTASGGEAIL-QAEF 87 (246)
T ss_pred CeEEEEEECCCCCcCCCCCCHHHCCC---------CCCeEcCHHHHHHHHHHhHHHHh--cCCCeEEEeCccHhc-CHHH
Confidence 35555788889999999986432100 00011234556666654322110 112458899999974 8888
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
+.++++.+++. + ..+++++|--.. ..+.++.+.+ .++.|.+++.+.+++..+.+... +.+.+.+.++.+.+.
T Consensus 88 ~~~l~~~~k~~-g----~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~ 160 (246)
T PRK11145 88 VRDWFRACKKE-G----IHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKR 160 (246)
T ss_pred HHHHHHHHHHc-C----CCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhC
Confidence 88999999863 3 357888876432 3577777766 47899999999999988887553 557888889999999
Q ss_pred CCCeeEeeeecCCCCCC--HHHHHHHHHHHHhCC-CCcEEEEeccccCCChhhh---cccCCCCCCCCHHHHHHHHHHHH
Q 012112 212 GVENWSLDLISSLPHQT--PQMWEESLRRTVGAQ-PKHVSVYDLQVEQGTKFGI---LYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT--~e~~~~~l~~~~~l~-p~his~y~l~~~pgT~l~~---~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
|+. +.+..++. ||.+ .+++++..+++.+++ +.++.+.++...++.+... .+.-...+.|+.++..+ +.
T Consensus 161 g~~-v~i~~~li-~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~----~~ 234 (246)
T PRK11145 161 NQK-TWIRYVVV-PGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMER----VK 234 (246)
T ss_pred CCc-EEEEEEEE-CCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHH----HH
Confidence 986 66665553 6654 568999999998885 5677777777666554322 11112334566555333 45
Q ss_pred HHHHHCCCc
Q 012112 286 SMLSSAGYR 294 (471)
Q Consensus 286 ~~L~~~Gy~ 294 (471)
+.+.+.|..
T Consensus 235 ~~~~~~g~~ 243 (246)
T PRK11145 235 GILEQYGHK 243 (246)
T ss_pred HHHHHcCCc
Confidence 566777754
No 103
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.21 E-value=3.1e-10 Score=112.60 Aligned_cols=134 Identities=19% Similarity=0.311 Sum_probs=112.7
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
+++.|-+.||.|.+ .+.+.+|++.+.+. ++ .++++-+|- .+-+...+.|+++|++||.+.+.|.|++..+++.
T Consensus 59 Gv~kvRlTGGEPll--R~dl~eIi~~l~~~-~~---~~islTTNG-~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT 131 (322)
T COG2896 59 GVEKVRLTGGEPLL--RKDLDEIIARLARL-GI---RDLSLTTNG-VLLARRAADLKEAGLDRVNVSLDSLDPEKFRKIT 131 (322)
T ss_pred CcceEEEeCCCchh--hcCHHHHHHHHhhc-cc---ceEEEecch-hhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHh
Confidence 38889999999965 45788999888876 33 478888774 6788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 194 RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
+....+++.+.++.|.++|+.-|.++..+ ++|-+.+++...++++...++ .+.+-.+++..
T Consensus 132 ~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv-~kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g 192 (322)
T COG2896 132 GRDRLDRVLEGIDAAVEAGLTPVKLNTVL-MKGVNDDEIEDLLEFAKERGA-QLRFIELMPLG 192 (322)
T ss_pred CCCcHHHHHHHHHHHHHcCCCceEEEEEE-ecCCCHHHHHHHHHHHhhcCC-ceEEEEEeecC
Confidence 88889999999999999999645555443 577899999999999999998 47777766553
No 104
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.17 E-value=8.5e-09 Score=108.27 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=121.8
Q ss_pred eeEEEEcC-CCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc-
Q 012112 115 LETVFFGG-GTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC- 192 (471)
Q Consensus 115 v~~i~fGG-GTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l- 192 (471)
+..|.|.| |.|.+ .++...+++..+++.+ ++..+++++|- .+.++.++.|.++|++.|.+.+-++|+++-+.+
T Consensus 79 ~~~V~iaG~GEPLl-~~e~~~~~l~~~~~~~---~~i~i~lsTNG-~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy 153 (442)
T TIGR01290 79 LSVVGIAGPGDPLA-NIGKTFQTLELVARQL---PDVKLCLSTNG-LMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIY 153 (442)
T ss_pred CCEEEEecCCCccc-CccccHHHHHHHHHhc---CCCeEEEECCC-CCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcc
Confidence 45577878 99975 6666666677777653 24578999887 455899999999999999999999999999876
Q ss_pred ------CCCCC--------HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC--
Q 012112 193 ------GRAHG--------LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ-- 256 (471)
Q Consensus 193 ------~R~~t--------~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p-- 256 (471)
||..+ .+.+.++++.+.+.|+. +.+..++ +||.+.+++.+..+++.++++..+.+.++.+.|
T Consensus 154 ~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~-v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~ 231 (442)
T TIGR01290 154 PWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL-VKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEH 231 (442)
T ss_pred hhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe-EEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCcccc
Confidence 33232 34556888899999986 5555433 578888999999999999999888888888777
Q ss_pred CChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 257 GTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 257 gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
|+++.- ...+.|+.++..++...+...+
T Consensus 232 G~~~~~----~~~~~ps~e~l~~~~~~~~~~~ 259 (442)
T TIGR01290 232 GTVYGL----NGQREPDPDELAALRDRLEMGT 259 (442)
T ss_pred CCccCc----CCCCCcCHHHHHHHHHHHHhhh
Confidence 877531 2345678777766665554443
No 105
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.16 E-value=2.5e-09 Score=108.00 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=134.6
Q ss_pred CCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH
Q 012112 52 SPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP 130 (471)
Q Consensus 52 ~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~ 130 (471)
-|+.+.+.+-+ |..+|.||.......... ...- ..+.+.+.++.. ++..|.|.||.|.+ .+
T Consensus 26 ~Pl~l~le~T~~CNL~C~~C~~~~~~~~~~-----~~~l----s~ee~~~~i~e~--------g~~~V~i~GGEPLL-~p 87 (318)
T TIGR03470 26 FPLVLMLEPLFRCNLACAGCGKIQYPAEIL-----KQRL----SVEECLRAVDEC--------GAPVVSIPGGEPLL-HP 87 (318)
T ss_pred CCCEEEEecccccCcCCcCCCCCcCCCccc-----ccCC----CHHHHHHHHHHc--------CCCEEEEeCccccc-cc
Confidence 34677788877 999999998643211000 0011 122223333321 24568888999976 44
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL 210 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~ 210 (471)
++.++++.+++. ...+++.+|.-.++ +.+..++.+|...|++.+.+..+.--+..++..+.+.+.++++.+++
T Consensus 88 -dl~eiv~~~~~~-----g~~v~l~TNG~ll~-~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~ 160 (318)
T TIGR03470 88 -EIDEIVRGLVAR-----KKFVYLCTNALLLE-KKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA 160 (318)
T ss_pred -cHHHHHHHHHHc-----CCeEEEecCceehH-HHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH
Confidence 478888888754 23588888975554 56888999999999999998754444444677899999999999999
Q ss_pred cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHH
Q 012112 211 CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSM 287 (471)
Q Consensus 211 ~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~ 287 (471)
+|+. |.+...+ +++++.+++.+.++++.+++++.+.+.+.. ++.+... .-...+.++..+.|....+.
T Consensus 161 ~G~~-v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~-----~~~~a~~--~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 161 RGFR-VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGY-----AYEKAPD--QDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred CCCc-EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCc-----ccccccc--cccccCHHHHHHHHHHHHhh
Confidence 9986 6665533 368999999999999999999988775433 3222111 11233455556666665443
No 106
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.16 E-value=1.3e-09 Score=106.00 Aligned_cols=210 Identities=19% Similarity=0.264 Sum_probs=147.0
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
|..+|.||+...-.. |+ .+....---.+.|+...+..++.- +..++.-.=|-|.|++.+ .+.++++++++
T Consensus 117 CnlnCIfCSVdeGp~---Sr---tR~~dy~Vd~eyLl~w~~kVa~~K--gkglEaHlDGqGEP~lYP--~l~~lVqalk~ 186 (414)
T COG2100 117 CNLNCIFCSVDEGPY---SR---TRKLDYVVDPEYLLEWFEKVARFK--GKGLEAHLDGQGEPLLYP--HLVDLVQALKE 186 (414)
T ss_pred ccceeEEEeccCCcc---cc---eeccceEecHHHHHHHHHHHHhhh--CCCeEEEecCCCCCccch--hHHHHHHHHhc
Confidence 999999998764322 11 111111112356666666554432 455777667889998755 68899999988
Q ss_pred HcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 143 KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC-GR-AHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 143 ~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l-~R-~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
+-+ ..-+++++|-..++++.++.|.++|++|+.+.|.|.|++.-|.| |+ .++.+.+.+.++.+.++|++-+-.-+
T Consensus 187 ~~~---v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv 263 (414)
T COG2100 187 HKG---VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPV 263 (414)
T ss_pred CCC---ceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeee
Confidence 743 34789999999999999999999999999999999999999876 54 57999999999999999987322222
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCC----cEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 221 ISSLPHQTPQMWEESLRRTVGAQPK----HVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~p~----his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
=+||-+.+++.+-++++.+.+.- .+.+-.+.++. +.+.. . ....-.-.+.|....++=++.|+..
T Consensus 264 --~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk---~GRkp---~--~~k~~~fkeFYrwLrelEketg~kp 332 (414)
T COG2100 264 --WLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYK---FGRKP---V--IAKVWPFKEFYRWLRELEKETGVKP 332 (414)
T ss_pred --ecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeec---ccCCc---c--ccccCcHHHHHHHHHHHHHHhCCCc
Confidence 27999999999999999998642 23333333321 22211 0 1111223467888888888888874
No 107
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.15 E-value=1.7e-09 Score=100.04 Aligned_cols=203 Identities=17% Similarity=0.248 Sum_probs=153.4
Q ss_pred EEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC--CHHH
Q 012112 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV--PPRF 132 (471)
Q Consensus 55 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l--~~~~ 132 (471)
++-|-=-||...|..|.-.... ..+...-..|+++...... .+.+.+.+.||.-+-. +-+.
T Consensus 13 sISVTG~yC~lnC~HCg~~~L~------------~Mi~vt~~~l~k~~~el~k-----kGy~g~llSGGm~srg~VPl~k 75 (275)
T COG1856 13 SISVTGAYCSLNCPHCGRHYLE------------HMIKVTTKSLLKRCMELEK-----KGYEGCLLSGGMDSRGKVPLWK 75 (275)
T ss_pred eEEEeccceEecChHHHHHHHH------------HhcccchHHHHHHHHHHHh-----cCceeEEEeCCcCCCCCccHHH
Confidence 3444445799999999754321 1111111344444433322 2356777877765443 4466
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc-CCCCCHHHHHHHHHHHHHc
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC-GRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l-~R~~t~~~~~~ai~~~~~~ 211 (471)
+...+.++++..+ +.+.++.+-++++.++.+++.+++-+|+-+=+ |+++++.+ +-..+.++..+.+..++++
T Consensus 76 f~d~lK~lke~~~------l~inaHvGfvdE~~~eklk~~~vdvvsLDfvg-Dn~vIk~vy~l~ksv~dyl~~l~~L~e~ 148 (275)
T COG1856 76 FKDELKALKERTG------LLINAHVGFVDESDLEKLKEELVDVVSLDFVG-DNDVIKRVYKLPKSVEDYLRSLLLLKEN 148 (275)
T ss_pred HHHHHHHHHHhhC------eEEEEEeeeccHHHHHHHHHhcCcEEEEeecC-ChHHHHHHHcCCccHHHHHHHHHHHHHc
Confidence 6677777777644 67778888899999999999999999999877 45555554 5556999999999999999
Q ss_pred CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 212 GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
|+. |--.+++||-+-...-=.+.++.+.+..||.+-+--++|.|||.|.. .++|+.++....+..|++..
T Consensus 149 ~ir-vvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~------~~pp~~eE~i~v~~~AR~~f 218 (275)
T COG1856 149 GIR-VVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGN------SPPPPVEEAIKVVKYARKKF 218 (275)
T ss_pred Cce-eceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccC------CCCcCHHHHHHHHHHHHHhC
Confidence 997 89999999988888888889999999999999999999999999865 36788899999999988873
No 108
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.09 E-value=8.3e-09 Score=96.31 Aligned_cols=159 Identities=19% Similarity=0.354 Sum_probs=109.9
Q ss_pred EeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHH
Q 012112 58 IHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSIL 137 (471)
Q Consensus 58 iHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll 137 (471)
+..--|+.+|.||..+..... ........+.+.++|+.... .+..|.|.||.|.+ .++ +.+++
T Consensus 21 ~~t~~Cnl~C~~C~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~------~~~~i~~sGGEPll-~~~-l~~li 83 (191)
T TIGR02495 21 IFFQGCNLKCPYCHNPELIDR---------EGSGEIEVEFLLEFLRSRQG------LIDGVVITGGEPTL-QAG-LPDFL 83 (191)
T ss_pred EEcCCCCCCCCCCCCccccCC---------CCCCcCCHHHHHHHHHHhcC------CCCeEEEECCcccC-cHh-HHHHH
Confidence 345569999999987532110 00011234566666654321 15667888999975 555 88888
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCC-CCEEEEccCCCCHHHHHHcCCCCCHH-HHHHHHHHHHHcCCCe
Q 012112 138 DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG-VNRVSLGVQAFQDELLKSCGRAHGLK-EVYEAIEIVKLCGVEN 215 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~G-vnrvsiGvQS~~d~~L~~l~R~~t~~-~~~~ai~~~~~~G~~~ 215 (471)
+.+++. + ..+.+.+|. .+++.++.+.++| ++.|++.+++.++...+..++..+.+ ++.++++.+++.|+.
T Consensus 84 ~~~~~~-g----~~v~i~TNg--~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~- 155 (191)
T TIGR02495 84 RKVREL-G----FEVKLDTNG--SNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP- 155 (191)
T ss_pred HHHHHC-C----CeEEEEeCC--CCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-
Confidence 888763 2 357777765 3688899999998 69999999997666667777766665 899999999999986
Q ss_pred eEee--eecCCCCCCHHHHHHHHHHHHhCC
Q 012112 216 WSLD--LISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 216 v~~D--lI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.+- ++-|..+ .+++.+..+++.+.+
T Consensus 156 ~~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 156 FELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 4444 4444433 567888888877665
No 109
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.07 E-value=4.1e-08 Score=100.51 Aligned_cols=203 Identities=16% Similarity=0.250 Sum_probs=138.1
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHH---HHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLC---REIIATKPGHKTSPPLETVFFGG-GTPSLVPPRFVSSILD 138 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~---~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~~l~~ll~ 138 (471)
|+.+|.||+-... |. ...-.....++.+. +++..... ...+..|.|-| |.|.+ +.+.+.++++
T Consensus 131 Cnl~C~FC~tg~~--g~------~rnLt~~EI~~qv~~~~~~~~~~~~----~~~v~nIvfmGmGEPLl-n~d~v~~~i~ 197 (368)
T PRK14456 131 CALRCSFCATGQM--GF------RRNLTAGEITGQVFALSDMLAERNR----ERGITNIVFMGMGEPLL-NTDNVFEAVL 197 (368)
T ss_pred CCCCCCCCCCCCC--CC------CCCCCHHHHHHHHHHHHHHHHhhhc----cCCccEEEEeCcCcccc-CHHHHHHHHH
Confidence 9999999986532 21 11112233444332 22221101 23477777877 99964 7777888888
Q ss_pred HHHHH-cCCC-CCcEEEEEecCCCCCHHHHHHHHHCCCC-EEEEccCCCCHHHHHHc----CCCCCHHHHHHHHH-HHHH
Q 012112 139 TLTDK-FGLS-LDAEISMEMDPGTFDARKMEELMDLGVN-RVSLGVQAFQDELLKSC----GRAHGLKEVYEAIE-IVKL 210 (471)
Q Consensus 139 ~l~~~-~~l~-~~~eitiE~~P~~l~~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l----~R~~t~~~~~~ai~-~~~~ 210 (471)
.+.+. .++. ....+|+.++- +.+ .++.|.+.|.. +|.+.+.|.+++..+.+ +|.++.+++.++++ .+++
T Consensus 198 ~l~~~~~~~~is~r~ItisT~G--l~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~ 274 (368)
T PRK14456 198 TLSTRKYRFSISQRKITISTVG--ITP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASK 274 (368)
T ss_pred HHhccccccCcCcCeeEEECCC--ChH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHh
Confidence 88764 3222 12478888774 554 57999999996 99999999999999988 35789999999997 4666
Q ss_pred cCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 211 CGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 211 ~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
.|.. .++.=+|-|+ ..+.+++.+.++++..+. -+|.+-+|.+.++.++ ..|+.+... ...+.|.
T Consensus 275 ~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~---------~~ps~e~i~----~F~~~L~ 339 (368)
T PRK14456 275 TGEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKF---------EPVCSSTRE----RFRDRLL 339 (368)
T ss_pred cCCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCC---------CCCCHHHHH----HHHHHHH
Confidence 7754 2455666665 588899999999998874 4788888887766653 245554433 3366788
Q ss_pred HCCCcee
Q 012112 290 SAGYRHY 296 (471)
Q Consensus 290 ~~Gy~~y 296 (471)
++|+...
T Consensus 340 ~~Gi~vt 346 (368)
T PRK14456 340 DAGLQVT 346 (368)
T ss_pred HCCCcEE
Confidence 9998764
No 110
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=7.6e-08 Score=98.27 Aligned_cols=205 Identities=17% Similarity=0.213 Sum_probs=133.0
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCC-eeEEE-EcCCCCCCCCHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPP-LETVF-FGGGTPSLVPPRFVSSILDTL 140 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~-v~~i~-fGGGTps~l~~~~l~~ll~~l 140 (471)
|+.+|.||.-.....+ ..-.....++.+......+..... +.. ++.|. .|+|.|.+ +.+.+.+.++.+
T Consensus 112 C~~~C~FC~tg~~g~~--------rnlt~~EI~~qv~~~~~~~~~~g~-g~~~i~nIvfmGmGEPLl-n~~~v~~~l~~l 181 (354)
T PRK14460 112 CAMGCTFCSTGTMGFE--------RNMTMGEILGQVLVAREHLGDNGP-DHPILRNLVFMGMGEPLL-NLDEVMRSLRTL 181 (354)
T ss_pred cCCCCccCCCCCCCCC--------cCCCHHHHHHHHHHHHHHHhhccC-CCcceeEEEEecCCcccC-CHHHHHHHHHHH
Confidence 9999999975432111 111233333333322222211111 222 55554 56699976 777777777777
Q ss_pred HHHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC---CCHHHHHHHHHHHH-HcCCC-
Q 012112 141 TDKFGLS-LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA---HGLKEVYEAIEIVK-LCGVE- 214 (471)
Q Consensus 141 ~~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~---~t~~~~~~ai~~~~-~~G~~- 214 (471)
++..++. ....+++.++-- .+.++.|.+.|..++.+.+.|.+++..+.+.+. .+.+++.++++... +.|-.
T Consensus 182 ~~~~Gl~~~~r~itvsT~G~---~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v 258 (354)
T PRK14460 182 NNEKGLNFSPRRITVSTCGI---EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERV 258 (354)
T ss_pred hhhhccCCCCCeEEEECCCC---hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeE
Confidence 6543332 124788887652 678899999999999999999999999988554 57888888777543 33332
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+++-+|=| .+++.+++.+..+++..++. +|.+-+|.+.+|.++ ..|+.+...+ ..+.|.++|+.
T Consensus 259 ~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y---------~~p~~e~v~~----f~~~l~~~Gi~ 323 (354)
T PRK14460 259 TFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY---------SAPTEERILA----FEKYLWSKGIT 323 (354)
T ss_pred EEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC---------CCCCHHHHHH----HHHHHHHCCCe
Confidence 134445545 58899999999999998865 788888888777654 2456554433 34568888876
Q ss_pred e
Q 012112 295 H 295 (471)
Q Consensus 295 ~ 295 (471)
.
T Consensus 324 v 324 (354)
T PRK14460 324 A 324 (354)
T ss_pred E
Confidence 5
No 111
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.04 E-value=8.9e-08 Score=100.17 Aligned_cols=191 Identities=12% Similarity=0.162 Sum_probs=131.5
Q ss_pred CCCCeEEEEecc--CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC
Q 012112 50 QLSPTSAYIHLP--FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL 127 (471)
Q Consensus 50 ~~~~~~lYiHIP--FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~ 127 (471)
...++++.+..- -|..+|.||............ .....-..-++.+++++.... +...-.+.|.||.|.+
T Consensus 9 ~~~p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~---~~~~ms~e~~~~~i~~~~~~~-----~~~~v~i~f~GGEPlL 80 (412)
T PRK13745 9 FAKPLYIMLKPVGAVCNLACDYCYYLEKSKLYQEN---PKHVMSDELLEKFIKEYINSQ-----TMPQVLFTWHGGETLM 80 (412)
T ss_pred cCcceEEEEeecCCCcCCCCcccCCcCCCcccccC---ccCCCCHHHHHHHHHHHHHcC-----CCCeEEEEEEccccCC
Confidence 344577777744 599999999874321000000 001122344455666654321 1224456677899998
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC----CCCHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR----AHGLKEVYE 203 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R----~~t~~~~~~ 203 (471)
.+...+.++++.+++.. -.....+++.+|.-.++++.++.+++.|+ .|+|.+.+. +++-....+ ..+.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~ 157 (412)
T PRK13745 81 RPLSFYKKALELQKKYA-RGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMK 157 (412)
T ss_pred CcHHHHHHHHHHHHHHc-CCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHH
Confidence 76667777777665443 23456788999998899999999999998 899999986 344333322 248999999
Q ss_pred HHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 204 AIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 204 ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
+++.++++|+. +++-..+. .++.+...+.++++.+++++++.+.++.+
T Consensus 158 ~i~~l~~~gi~-~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 158 GINLLKKHGVE-WNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HHHHHHHcCCC-EEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 99999999986 66654443 67788889999999999999999888665
No 112
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.02 E-value=1.2e-08 Score=105.16 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=139.0
Q ss_pred EEEecc-CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 56 AYIHLP-FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 56 lYiHIP-FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
+.+++- -|...|.||.-....... .......-++++++.|+. . ..+..|.|.||.|.+++.+.++
T Consensus 110 vLl~vT~~C~~~CryC~R~~~~g~~-------~~~ls~eei~~~i~yI~~---~----p~I~~VlLSGGDPLll~d~~L~ 175 (417)
T TIGR03820 110 VLFLVSNTCAMYCRHCTRKRKVGDR-------DSIPSKEQILEGIEYIRN---T----PQIRDVLLSGGDPLLLSDDYLD 175 (417)
T ss_pred EEEEEcCCcCCCCcCCCCcccCCcc-------cccCCHHHHHHHHHHHHh---c----CCCCEEEEeCCccccCChHHHH
Confidence 344444 399999999765322110 011112223334444432 1 2478899999999999998999
Q ss_pred HHHHHHHHHcCCCCCcEEEEEec-----CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEMD-----PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~-----P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
.+++.|++.-. ...+++-++ |..+|++.++.|++.+. +.++++.-+++.+ .+++.+|++.++
T Consensus 176 ~iL~~L~~Iph---V~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~--~~v~~h~nhp~Ei--------t~~a~~Al~~L~ 242 (417)
T TIGR03820 176 WILTELRAIPH---VEVIRIGTRVPVVLPQRITDELVAILKKHHP--VWLNTHFNHPREI--------TASSKKALAKLA 242 (417)
T ss_pred HHHHHHhhcCC---CceEEEeeccccccccccCHHHHHHHHhcCC--eEEEEeCCChHhC--------hHHHHHHHHHHH
Confidence 99999887422 224788888 88899999999999985 5555555555432 588999999999
Q ss_pred HcCCCeeE-eeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 210 LCGVENWS-LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 210 ~~G~~~v~-~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
++|+.-.+ .-++=|+ +.+.+.+.+..+.+.++++.---+|.+.+.+|+.-++ .+.+...++++.++..+
T Consensus 243 ~aGI~l~nQsVLLkGV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFr---------v~~~~g~~I~~~lr~~~ 312 (417)
T TIGR03820 243 DAGIPLGNQSVLLAGV-NDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFR---------TPVGKGIEIIESLIGHT 312 (417)
T ss_pred HcCCEEEeeceEECCc-CCCHHHHHHHHHHHHHCCCeeceeeeccCCCCccccc---------CcHHHHHHHHHHHHHhC
Confidence 99997333 5566675 8889999999999999998777777777888876544 24566777888777765
Q ss_pred HH
Q 012112 289 SS 290 (471)
Q Consensus 289 ~~ 290 (471)
..
T Consensus 313 sG 314 (417)
T TIGR03820 313 SG 314 (417)
T ss_pred CC
Confidence 43
No 113
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.00 E-value=3.5e-08 Score=100.04 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=131.9
Q ss_pred EEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 56 AYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 56 lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
+++++-- |+.+|.||.-.....+. .... ..-++.+++.++. . ..+..|.|.||.|.+++...+.
T Consensus 115 vll~~T~gCn~~C~yC~~~~~~~~~-------~~~~-~~~~~~~i~~i~~---~----~~i~eV~lsGGDPLl~~d~~L~ 179 (331)
T TIGR00238 115 ALFLVKGGCAVNCRYCFRRHFPYKE-------NPGN-KKKWQKALDYIAE---H----PEIIEILISGGDPLMAKDHELE 179 (331)
T ss_pred EEEEeCCCCCCCCcCCCCCCcCCCC-------CCcc-HHHHHHHHHHHHh---C----CCcCEEEEECCccccCCHHHHH
Confidence 3344433 99999999854322110 1111 2334444455432 1 2367899999999888877899
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe-----cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEM-----DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~-----~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++++.+++.-.+ ..+.+.+ +|..+|++.++.|+++|+..+.++.-...+++ .+++.+|++.++
T Consensus 180 ~ll~~L~~i~~~---~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~ 247 (331)
T TIGR00238 180 WLLKRLEEIPHL---VRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLR 247 (331)
T ss_pred HHHHHHHhcCCc---cEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHH
Confidence 999998864222 2344443 36668999999999999988877755443321 267899999999
Q ss_pred HcCCCee-EeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 210 LCGVENW-SLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 210 ~~G~~~v-~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
++|+.-. ..-++-|. ..+.+.+.+..+.+.++++....++.+.+..|+.-+ . .+.++..+++..+...+
T Consensus 248 ~aGi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f--------~-~~~~~~~~i~~~l~~~~ 317 (331)
T TIGR00238 248 TVNVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF--------L-VPDAEAAQIVKELARLT 317 (331)
T ss_pred HcCCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc--------c-CCHHHHHHHHHHHHhcC
Confidence 9999732 23344444 677888999999999999888888888887776322 2 34566677777766654
Q ss_pred H
Q 012112 289 S 289 (471)
Q Consensus 289 ~ 289 (471)
.
T Consensus 318 s 318 (331)
T TIGR00238 318 S 318 (331)
T ss_pred C
Confidence 4
No 114
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.98 E-value=1.6e-07 Score=96.79 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=127.5
Q ss_pred CCeEEEEecc--CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 52 SPTSAYIHLP--FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 52 ~~~~lYiHIP--FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
+++++++-.. -|+.+|.||............ .........++.+++++.... ....+|.|.||.|.+.+
T Consensus 2 ~~~~~~~~~~t~~CNl~C~yC~~~~~~~~~~~~---~~~~m~~~~~~~~i~~~~~~~------~~~~~i~~~GGEPll~~ 72 (370)
T PRK13758 2 PPLSLLIKPASSGCNLKCTYCFYHSLSDNRNVK---SYGIMRDEVLESMVKRVLNEA------EGHCSFAFQGGEPTLAG 72 (370)
T ss_pred CceEEEEecCCCCcCCCCcccCCcCcccccccc---ccCCCCHHHHHHHHHHHHhcc------CCceEEEEECCccccCC
Confidence 3677777776 399999999875422110000 001122344555555443221 12456888899999876
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC----CCCCHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG----RAHGLKEVYEAI 205 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~----R~~t~~~~~~ai 205 (471)
.+.+.++++.+++.-.......+++.+|--.++++.++.|++.|+ .|+|.+.+. +++-...+ ...+.+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i 150 (370)
T PRK13758 73 LEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAA 150 (370)
T ss_pred hHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHH
Confidence 677888888887652111223568889988889999999999997 899999997 45544443 345889999999
Q ss_pred HHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 206 ~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+.+++.|+. +.+-.++. ..+.+++.+.++++.+++++.+.+.+
T Consensus 151 ~~l~~~~~~-~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 151 ELFKKYKVE-FNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred HHHHHhCCC-ceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 999999886 66655554 45778889999999999998776544
No 115
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.95 E-value=2.6e-07 Score=94.54 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=133.3
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCee-EEEEcCCCCCCCCHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLE-TVFFGGGTPSLVPPRFVSSILDTLT 141 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~-~i~fGGGTps~l~~~~l~~ll~~l~ 141 (471)
|+.+|.||.-.....+ ..-..+..++.+..-....... +.++. -++.|+|.|.+ +.+.+.++++.+.
T Consensus 119 C~~~C~FC~t~~~~~~--------r~lt~~EIv~qv~~~~~~~~~~---g~~v~~Vv~~GmGEPLl-n~~~v~~~l~~l~ 186 (356)
T PRK14455 119 CRIGCTFCASTLGGLK--------RDLEAGEIVAQVMLVQKYLDET---EERVSHIVVMGIGEPFD-NYDNVMDFLRIIN 186 (356)
T ss_pred CCCCCCcCCCCCCCCC--------ccCCHHHHHHHHHHHHHHHhhc---CCCcceEEEeccccccC-CHHHHHHHHHHHh
Confidence 9999999987643211 1122333333333211122111 12354 45677799964 7788889999887
Q ss_pred HHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCC-CEEEEccCCCCHHHHHH---cCCCCCHHHHHHHHHHHHHcCCCee
Q 012112 142 DKFGLS-LDAEISMEMDPGTFDARKMEELMDLGV-NRVSLGVQAFQDELLKS---CGRAHGLKEVYEAIEIVKLCGVENW 216 (471)
Q Consensus 142 ~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~Gv-nrvsiGvQS~~d~~L~~---l~R~~t~~~~~~ai~~~~~~G~~~v 216 (471)
+..++. ....++++++- +.+ .+..+.+.+. ..+.+.+-+.|++..+. ++|.++.+++.++++.+.+.+...|
T Consensus 187 ~~~g~~~s~r~itvsT~G--~~~-~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v 263 (356)
T PRK14455 187 DDKGLAIGARHITVSTSG--IAP-KIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRV 263 (356)
T ss_pred cccCcccCCCceEEEecC--chH-hHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeE
Confidence 643331 12378888764 223 4555556553 34779999999999996 6788899999999998866544446
Q ss_pred Ee-eeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 217 SL-DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 217 ~~-DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+ ..+++-.+.+.+++.+..+++..++ .+|.+-++.+.++.++ ..|+.+...+ ..+.|.++|+..
T Consensus 264 ~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky---------~~ps~e~l~~----f~~~L~~~gi~v 329 (356)
T PRK14455 264 TFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY---------VRTPKEDIFA----FEDTLKKNGVNC 329 (356)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC---------cCCCHHHHHH----HHHHHHHCCCcE
Confidence 66 5666666888999999999998886 5788888877665532 2366554443 346778889865
No 116
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.93 E-value=2.1e-08 Score=97.83 Aligned_cols=231 Identities=15% Similarity=0.205 Sum_probs=153.8
Q ss_pred CCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 50 ~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
+.....+-.|.+=|...|.||.......-..+.....+..+...-++.+++-+-.....+ ++..+.+|..+. .+
T Consensus 28 ~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~-~rici~~i~~p~----~~- 101 (339)
T COG2516 28 PTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNF-KRICIQQIAYPR----AL- 101 (339)
T ss_pred cceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhccc-ccccceeecccc----cc-
Confidence 334444555667799999999875421100000000112222333333333332211111 123355555432 11
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEE--ecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC----CCCHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISME--MDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR----AHGLKEVYE 203 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE--~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R----~~t~~~~~~ 203 (471)
..+..+++.++.. ...++|+- +++-.. .+.+..++++|...+++++...+.++++.+.| .|+.+...+
T Consensus 102 -~d~~~i~~~~~~~----~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~ 175 (339)
T COG2516 102 -NDLKLILERLHIR----LGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWE 175 (339)
T ss_pred -chhhhhhhhhhhc----cCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHH
Confidence 2344555555432 23467776 677655 89999999999999999999999999998833 578999999
Q ss_pred HHHHHHHc-CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHH
Q 012112 204 AIEIVKLC-GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYR 282 (471)
Q Consensus 204 ai~~~~~~-G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~ 282 (471)
.++.+.++ |-.+|++.+|+|+ |+|.++|.+++..+...+.. ++++.+.++.||.+.+. ..++.+...+++.
T Consensus 176 ~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~~-v~Lfaf~P~~gt~me~r------~~~pve~Yrk~q~ 247 (339)
T COG2516 176 FLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGGI-VSLFAFTPLKGTQMENR------KPPPVERYRKIQV 247 (339)
T ss_pred HHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcCce-EEEEEecccccccccCC------CCCcHHHHHHHHH
Confidence 98887776 6557999999996 99999999999999998864 99999999999998764 3456667777665
Q ss_pred HHHHHHHHCCCceecccccc
Q 012112 283 MASSMLSSAGYRHYEISSYG 302 (471)
Q Consensus 283 ~~~~~L~~~Gy~~yeis~fa 302 (471)
+. +|-+.|-..++.--|-
T Consensus 248 a~--yli~~G~v~~~~~~fd 265 (339)
T COG2516 248 AR--YLIGNGEVDLEDFEFD 265 (339)
T ss_pred HH--HHHhcCccchhhcccc
Confidence 54 8999998776654443
No 117
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.91 E-value=6.9e-08 Score=97.47 Aligned_cols=161 Identities=15% Similarity=0.213 Sum_probs=114.8
Q ss_pred eeEEEEc-CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 115 LETVFFG-GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 115 v~~i~fG-GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
.+.+.|. +|.|++ .+ .+.++++.+++. + ..+.+++|- ++ ++.++.| ..+++.|.+.+.+.+++..+.+.
T Consensus 130 ~~~v~iSl~GEPlL-~p-~l~eli~~~k~~-G----i~~~L~TNG-~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~ 199 (322)
T PRK13762 130 PKHVAISLSGEPTL-YP-YLPELIEEFHKR-G----FTTFLVTNG-TR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKIN 199 (322)
T ss_pred CCEEEEeCCccccc-hh-hHHHHHHHHHHc-C----CCEEEECCC-CC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHh
Confidence 3445554 789986 44 788999988864 2 357888887 33 6888888 77999999999999999999997
Q ss_pred CC---CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCC
Q 012112 194 RA---HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP 270 (471)
Q Consensus 194 R~---~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~ 270 (471)
|. .+.+.+.++++.+++.|.. +.+-+.+ +||.+..+..+..+++.+++++.|.+-++++..... ++ .....
T Consensus 200 ~~~~~~~~~~vl~~L~~l~~~~~~-~~ir~tl-v~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k-~~---l~~~~ 273 (322)
T PRK13762 200 RPVIPDAWERILETLELLPSKKTR-TVIRITL-VKGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR-NR---LTRDN 273 (322)
T ss_pred CCCCCCcHHHHHHHHHHHHhCCCC-EEEEEEE-ECCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc-cc---ccccC
Confidence 74 5899999999999999875 4443322 466666666677888888999999887777654332 11 11224
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 271 LPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 271 ~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.|+.++..+....+.+.. ||.
T Consensus 274 ~p~~eev~~~~~~l~~~~---~~~ 294 (322)
T PRK13762 274 MPSHEEVREFAKELAEYT---GYE 294 (322)
T ss_pred CcCHHHHHHHHHHHHHhc---CCe
Confidence 577777666665554442 664
No 118
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.91 E-value=9e-08 Score=97.11 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=134.6
Q ss_pred CCCeEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 51 LSPTSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 51 ~~~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
..+..+.+-++. |+.+|.||....... . ...........+..++... +. +..+.|+||.|.+.
T Consensus 16 ~~p~~~~~~~t~~Cnl~C~~C~~~~~~~-~-------~~el~~~~~~~~~~~~~~~------g~-~~~v~~~gGEPll~- 79 (347)
T COG0535 16 KPPLVVGIELTNRCNLACKHCYAEAGKK-L-------PGELSTEEDLRVIDELAEL------GE-IPVVIFTGGEPLLR- 79 (347)
T ss_pred cCCcEEEEeeccccCCcCcccccccCCC-C-------ccccCHHHHHHHHHHHHHc------CC-eeEEEEeCCCcccc-
Confidence 355677777777 999999997765421 0 0111112222344444332 22 67889999999875
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHH-HHHcCCCCCHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDEL-LKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~-L~~l~R~~t~~~~~~ai~~~ 208 (471)
..+.++++.+++.. ...+++-+|...++++.++.++++|++.|++.+++.+++. ...-|+....+.+.++++.+
T Consensus 80 -~d~~ei~~~~~~~~----~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~ 154 (347)
T COG0535 80 -PDLLEIVEYARKKG----GIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNL 154 (347)
T ss_pred -ccHHHHHHHHhhcC----CeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHH
Confidence 56777777776542 3467777776557899999999999999999999999999 66777788899999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
++.|+. +.+ .+.+++.+.+++.+.++.+.+++++.+.++.+.+..
T Consensus 155 ~~~g~~-~~~--~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 155 KEAGIL-VVI--NTTVTKINYDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred HHcCCe-eeE--EEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeecc
Confidence 999986 333 334568899999999999999999888888887643
No 119
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.88 E-value=3.4e-07 Score=93.31 Aligned_cols=207 Identities=18% Similarity=0.219 Sum_probs=130.1
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeE-EEEcCCCCCCCCHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLET-VFFGGGTPSLVPPRF 132 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~-i~fGGGTps~l~~~~ 132 (471)
.++|-+-= |+.+|.||.-... +. .+.-.++.+++++...... ..++. ++.|.|.|.+ +.+.
T Consensus 104 t~cvSsq~GC~~~C~FC~tg~~--~~----------~r~lt~~EI~~qv~~~~~~----~~i~~IvfmG~GEPl~-n~~~ 166 (349)
T PRK14463 104 TLCISSQVGCAMGCAFCLTGTF--RL----------TRNLTTAEIVNQVCAVKRD----VPVRNIVFMGMGEPLA-NLDN 166 (349)
T ss_pred EEEEEecCCcCCCCccCCCCCC--CC----------CCCCCHHHHHHHHHHHHhc----CCccEEEEecCCcchh-cHHH
Confidence 34443322 9999999974422 11 0112234455555443221 12444 5556699975 6556
Q ss_pred HHHHHHHHHH--HcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHH
Q 012112 133 VSSILDTLTD--KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEI 207 (471)
Q Consensus 133 l~~ll~~l~~--~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~ 207 (471)
+.+.++.+.+ .++++ ...++++++- +.++ +..+....--.+.+.+.|.+++..+.+ +|.++.+++.+++..
T Consensus 167 vi~~l~~l~~~~gl~~s-~r~itVsTnG--l~~~-i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~ 242 (349)
T PRK14463 167 VIPALQILTDPDGLQFS-TRKVTVSTSG--LVPE-MEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKA 242 (349)
T ss_pred HHHHHHHhhcccccCcC-CceEEEECCC--chHH-HHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 6666666643 22232 2478888765 3343 344444333357789999999999997 788999999998877
Q ss_pred HHHcCCCeeEe-eeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 208 VKLCGVENWSL-DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 208 ~~~~G~~~v~~-DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
....+-..|.+ .++++-.+++.+++.+..+++..++. +|.+-++.+.+|. .+..|+.+...+ ..+
T Consensus 243 ~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~---------~~~~ps~e~i~~----f~~ 308 (349)
T PRK14463 243 FPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC---------DFRSPTQEAIDR----FHK 308 (349)
T ss_pred HHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC---------CCCCCCHHHHHH----HHH
Confidence 66654344665 45555568999999999999998864 7777777665442 345577655443 345
Q ss_pred HHHHCCCcee
Q 012112 287 MLSSAGYRHY 296 (471)
Q Consensus 287 ~L~~~Gy~~y 296 (471)
.|.++|+...
T Consensus 309 ~L~~~gi~v~ 318 (349)
T PRK14463 309 YLLDKHVTVI 318 (349)
T ss_pred HHHHCCceEE
Confidence 6888898653
No 120
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.84 E-value=2.1e-07 Score=96.37 Aligned_cols=188 Identities=15% Similarity=0.072 Sum_probs=122.0
Q ss_pred HHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEE-ecCC-CCCHHHHHHHHHC
Q 012112 95 IQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISME-MDPG-TFDARKMEELMDL 172 (471)
Q Consensus 95 v~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE-~~P~-~l~~e~l~~l~~~ 172 (471)
++.+++|+......+. ...-.-.+.|||.|+. . +.+.++++.+++. + ..+.++ +|-. ..+++.++.++++
T Consensus 56 ~~evl~ev~~d~~~~~-~~~ggVtisGGGepl~-~-~~l~eLl~~lk~~-g----i~taI~~TnG~~l~~~e~~~~L~~~ 127 (404)
T TIGR03278 56 PQVVLGEVQTSLGFRT-GRDTKVTISGGGDVSC-Y-PELEELTKGLSDL-G----LPIHLGYTSGKGFDDPEIAEFLIDN 127 (404)
T ss_pred HHHHHHHHHHHHHHhc-CCCCEEEEECCccccc-C-HHHHHHHHHHHhC-C----CCEEEeCCCCcccCCHHHHHHHHHc
Confidence 5666666664332221 1112234566667754 4 4788999999874 2 346776 5543 3489999999999
Q ss_pred CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCH-HHHHHHHHHHHhCCCCcEEEEe
Q 012112 173 GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP-QMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 173 GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~-e~~~~~l~~~~~l~p~his~y~ 251 (471)
|++.|.+.+.+.|+++.+.+-.....+.+.+.++.+.+. +. +.+-. +=+||-+. ++..++++++.++++..+.+.+
T Consensus 128 gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~-v~~~i-vlIPGiND~eel~~ti~~L~~lg~~~V~L~~ 204 (404)
T TIGR03278 128 GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CE-VHAAS-VIIPGVNDGDVLWKTCADLESWGAKALILMR 204 (404)
T ss_pred CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CC-EEEEE-EEeCCccCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999855444558899999999884 44 44332 22567665 5667999999999999888888
Q ss_pred ccccCCChh--hhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 252 LQVEQGTKF--GILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 252 l~~~pgT~l--~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
+.......+ ...+....+..+ ...++...+.++.++.|+..+
T Consensus 205 y~~~g~~ky~lg~~~~~~~~~~~---~~~e~~~~v~~~~~~~~i~~~ 248 (404)
T TIGR03278 205 FANTEEQGLILGNAPIIPGIKPH---TVSEFKNIVRETHKEFPIRVT 248 (404)
T ss_pred cccccccccccCCcCcccCCCCC---CHHHHHHHHHHHHHHhCCccc
Confidence 764322211 111111112223 344456666777777776654
No 121
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.82 E-value=7.7e-07 Score=90.60 Aligned_cols=210 Identities=14% Similarity=0.209 Sum_probs=131.3
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCC-CCCCeeEEEEcC-CCCCCCCH
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK-TSPPLETVFFGG-GTPSLVPP 130 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~-~~~~v~~i~fGG-GTps~l~~ 130 (471)
..++|-.-- |+.+|.||.......+ ..-. .+.+++++.......+ ....++.|.|.| |.|.+ +.
T Consensus 93 ~t~cvSsq~GC~l~C~fC~tg~~g~~--------r~Lt----~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll-n~ 159 (343)
T PRK14468 93 KTICVSTMVGCPAGCAFCATGAMGFG--------RNLT----AAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL-NY 159 (343)
T ss_pred CEEEEEecCCCCCcCCCCCCCCCCCC--------CCCC----HHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc-CH
Confidence 444443333 9999999975432111 1111 2333444332211111 013477787876 99975 66
Q ss_pred HHHHHHHHHHHHH--cCCCCCcEEEEEecCCCCCHHHHHHHHHCCCC-EEEEccCCCCHHHHHHcC---CCCCHHHHHHH
Q 012112 131 RFVSSILDTLTDK--FGLSLDAEISMEMDPGTFDARKMEELMDLGVN-RVSLGVQAFQDELLKSCG---RAHGLKEVYEA 204 (471)
Q Consensus 131 ~~l~~ll~~l~~~--~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l~---R~~t~~~~~~a 204 (471)
+.+.+.++.+... ++++. ..+|+.++- ....++.|.+.|.. +|.+.+-+.+++..+++. +..+.+++.++
T Consensus 160 ~~v~~~i~~l~~~~g~~l~~-r~itvST~G---~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~ 235 (343)
T PRK14468 160 ENVLKAARIMLHPQALAMSP-RRVTLSTVG---IPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAA 235 (343)
T ss_pred HHHHHHHHHhcccccccccC-ceEEEECCC---ChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHH
Confidence 6666666555322 23332 368888765 24677788887765 799999999999999884 66788999999
Q ss_pred HHHHHHc-CCCeeE--eeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHH
Q 012112 205 IEIVKLC-GVENWS--LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFY 281 (471)
Q Consensus 205 i~~~~~~-G~~~v~--~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~ 281 (471)
++...+. +. .|. .-+|=|+ ..+.++..+..+++..+. .+|.+-++.+.++. .+..|+++...+
T Consensus 236 l~~~~~~~~~-~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~---------~~~~ps~e~i~~-- 301 (343)
T PRK14468 236 VRHYQAVTGR-RVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS---------PFQSSPRAQILA-- 301 (343)
T ss_pred HHHHHHhcCC-eEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC---------CCCCCCHHHHHH--
Confidence 8754444 43 344 4444454 578888999999988875 47877777765432 234566654333
Q ss_pred HHHHHHHHHCCCcee
Q 012112 282 RMASSMLSSAGYRHY 296 (471)
Q Consensus 282 ~~~~~~L~~~Gy~~y 296 (471)
..+.|.++|+..+
T Consensus 302 --f~~~L~~~Gi~vt 314 (343)
T PRK14468 302 --FADVLERRGVPVS 314 (343)
T ss_pred --HHHHHHHCCCeEE
Confidence 4567888998764
No 122
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.80 E-value=1.1e-06 Score=89.79 Aligned_cols=208 Identities=16% Similarity=0.202 Sum_probs=133.2
Q ss_pred CeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCH
Q 012112 53 PTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPP 130 (471)
Q Consensus 53 ~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~ 130 (471)
..++.|.. --|+.+|.||.-... |. ...- ..+.+++++....... ...+..|.|-| |.|.+ ++
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~~--g~------~r~l----t~~EI~~qv~~~~~~~--~~~v~~Vvf~GmGEPLl-n~ 164 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQS--GF------VRNL----TTGEIVSQILAMEKEE--KKKVGNVVYMGMGEPLL-NY 164 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCCC--Cc------cccC----CHHHHHHHHHHHHHhc--cCCcCeEEEEccChhhh-hH
Confidence 45666666 559999999975321 11 0111 1233444443221111 12366677766 99964 77
Q ss_pred HHHHHHHHHHHHHcCCCC-CcEEEEEecCCCCCHHHHHHHHHCCCC-EEEEccCCCCHHHHHHc---CCCCCHHHHHHHH
Q 012112 131 RFVSSILDTLTDKFGLSL-DAEISMEMDPGTFDARKMEELMDLGVN-RVSLGVQAFQDELLKSC---GRAHGLKEVYEAI 205 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~-~~eitiE~~P~~l~~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai 205 (471)
+.+.++++.+.+..+... ...+|+.++- ..+.++.|.+.|++ +|.+.+.+.+++..+.+ +|.++.+++.+++
T Consensus 165 d~v~~~i~~l~~~~~~~~g~~~itisTnG---~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l 241 (343)
T PRK14469 165 ENVIKSIKILNHKKMKNIGIRRITISTVG---IPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAV 241 (343)
T ss_pred HHHHHHHHHHhchhcccCCCCeEEEECCC---ChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHH
Confidence 777777777765322211 2378887765 26788899999998 89999999999998874 6788999999998
Q ss_pred HHHHHc-CCCeeEe--eeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHH
Q 012112 206 EIVKLC-GVENWSL--DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYR 282 (471)
Q Consensus 206 ~~~~~~-G~~~v~~--DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~ 282 (471)
+...+. +.. +.+ =+|-|+ ..+.+++++..+++..++. +|.+-++.+.++ .+..|+++...+
T Consensus 242 ~~~~~~~~~~-v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~----------~~~~ps~e~l~~--- 305 (343)
T PRK14469 242 KIYQKKTGNR-VTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP----------GLEKPSRERIER--- 305 (343)
T ss_pred HHHHHHhCCe-EEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCc----------cCCCCCHHHHHH---
Confidence 866554 443 443 344443 5678899988888887753 577766655432 234566544333
Q ss_pred HHHHHHHHCCCce
Q 012112 283 MASSMLSSAGYRH 295 (471)
Q Consensus 283 ~~~~~L~~~Gy~~ 295 (471)
..+.|.+.|...
T Consensus 306 -f~~~l~~~gi~v 317 (343)
T PRK14469 306 -FKEILLKNGIEA 317 (343)
T ss_pred -HHHHHHHCCCeE
Confidence 345678888754
No 123
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.79 E-value=1.9e-06 Score=87.30 Aligned_cols=207 Identities=17% Similarity=0.177 Sum_probs=132.1
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHH
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPPR 131 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~ 131 (471)
..+.|--.= |+.+|.||.-...... ...... .+++++....... ...++.|.|-| |.|.+ +.+
T Consensus 97 ~t~cvSsq~GC~l~C~fC~tg~~g~~--------r~l~~~----EI~~qi~~~~~~~--~~~i~nIvfmGmGEPll-N~d 161 (336)
T PRK14470 97 HVVCLSSQAGCALGCAFCATGKLGLD--------RSLRSW----EIVAQLLAVRADS--ERPITGVVFMGQGEPFL-NYD 161 (336)
T ss_pred CEEEEeCCCCcCCCCccccCCCCCCC--------CCCCHH----HHHHHHHHHHHhc--CCCCCEEEEEecCcccc-CHH
Confidence 344443332 9999999987543211 111223 3333333222111 13467777777 99974 777
Q ss_pred HHHHHHHHHHHH--cCCCCCcEEEEEecCCCCCHHHHHHHHHCCC-CEEEEccCCCCHHHHHHcCC---CCCHHHHHHHH
Q 012112 132 FVSSILDTLTDK--FGLSLDAEISMEMDPGTFDARKMEELMDLGV-NRVSLGVQAFQDELLKSCGR---AHGLKEVYEAI 205 (471)
Q Consensus 132 ~l~~ll~~l~~~--~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv-nrvsiGvQS~~d~~L~~l~R---~~t~~~~~~ai 205 (471)
.+.++++.+.+. ++++ ...+++.++-- .+ .++.+.+.|. .+|.+.+.+.+++..+.+.+ .++.+++.+++
T Consensus 162 ~v~~~i~~l~~~~~~~~~-~~~ItVsTnG~--~p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai 237 (336)
T PRK14470 162 EVLRAAYALCDPAGARID-GRRISISTAGV--VP-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAI 237 (336)
T ss_pred HHHHHHHHHhCccccccC-CCceEEEecCC--hH-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHH
Confidence 888888888754 2332 46899988752 33 4445555554 78999999999999999854 56899999999
Q ss_pred HHHHHcCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHH
Q 012112 206 EIVKLCGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMA 284 (471)
Q Consensus 206 ~~~~~~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~ 284 (471)
+...+.|-. .+..-+|-|+ ..+.++.++..+++..+. -+|.+-++.+.++ .+..|+++...+..
T Consensus 238 ~~~~~~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~-~~vnlI~~N~~~~----------~~~~p~~~~i~~f~--- 302 (336)
T PRK14470 238 REHAALRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIP-VRLNPIAVNDATG----------RYRPPDEDEWNAFR--- 302 (336)
T ss_pred HHHHHhCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCC-CeEEEeccCCCCC----------CccCCCHHHHHHHH---
Confidence 988777554 2345556666 467888888888887764 3787777776443 34557766554443
Q ss_pred HHHH--HHCCCce
Q 012112 285 SSML--SSAGYRH 295 (471)
Q Consensus 285 ~~~L--~~~Gy~~ 295 (471)
+.| .++|...
T Consensus 303 -~~l~~~~~g~~~ 314 (336)
T PRK14470 303 -DALARELPGTPV 314 (336)
T ss_pred -HHHHHccCCeEE
Confidence 456 3567654
No 124
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.74 E-value=4.9e-07 Score=91.34 Aligned_cols=197 Identities=14% Similarity=0.162 Sum_probs=129.6
Q ss_pred EEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 55 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
.+-+=-.-|+.+|.||.-...... .......-++++++.|+.. ..+..|.|.||.|.+.+...+.
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~--------~~~~~~~~~~~~i~~i~~~-------~~i~~VvltGGEPL~~~d~~L~ 162 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQ--------ENQPNKAQWKEALEYIAQH-------PEINEVILSGGDPLMAKDHRLD 162 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCC--------CCCCCHHHHHHHHHHHHhc-------CCCCEEEEeCcccccCCchHHH
Confidence 344444459999999974332111 1111223345555555432 2367788999999887777788
Q ss_pred HHHHHHHHHcCCCCCcEEEEE-----ecCCCCCHHHHHHHHHCCCCEEE-EccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISME-----MDPGTFDARKMEELMDLGVNRVS-LGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE-----~~P~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
++++.+...- ...++.+- ..|..++++.++.|+++|+..+. +.+.+-. ++ .+++.+|++.+
T Consensus 163 ~ll~~l~~i~---~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L 229 (321)
T TIGR03821 163 WLLNLLEQIP---HLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKL 229 (321)
T ss_pred HHHHHHHhCC---CCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHH
Confidence 9988887532 12234433 45667899999999999987663 4555432 21 14588899999
Q ss_pred HHcCCCeeEeeeec--CCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 209 KLCGVENWSLDLIS--SLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 209 ~~~G~~~v~~DlI~--GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
+++|+. +.....+ |+ ..+.+++.+..+.+.++++....+|.+.+..|+.- + ..+.++..+++..+.+
T Consensus 230 ~~~Gi~-v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~--------f-~v~~~~~~~i~~~l~~ 298 (321)
T TIGR03821 230 RNAGIT-LLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAH--------F-DVDDERARALMAELLA 298 (321)
T ss_pred HHcCCE-EEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCccc--------c-cCCHHHHHHHHHHHHH
Confidence 999987 4433332 33 47899999999999999998888888877776542 1 2355677777877777
Q ss_pred HHHH
Q 012112 287 MLSS 290 (471)
Q Consensus 287 ~L~~ 290 (471)
.+..
T Consensus 299 ~~sG 302 (321)
T TIGR03821 299 RLPG 302 (321)
T ss_pred hCCC
Confidence 6544
No 125
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.72 E-value=1.7e-06 Score=87.54 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=129.0
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPPRFVSSILDTLT 141 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~~l~~ll~~l~ 141 (471)
|+.+|.||+-... |. .. .-..+.++.++...... .+++.|-|-| |.|. ++.+.+.+.++.+.
T Consensus 113 C~~~C~FC~Tg~~--g~------~r----nLt~~EIl~Qv~~~~~~----~~i~nIvfmGmGEPL-~N~d~vi~al~~l~ 175 (345)
T PRK14466 113 CKMNCLFCMTGKQ--GF------TG----NLTAAQILNQIYSLPER----DKLTNLVFMGMGEPL-DNLDEVLKALEILT 175 (345)
T ss_pred CCCCCCCCCCCCC--CC------CC----CCCHHHHHHHHHhhhhc----CCCCeEEEeeeCcCc-ccHHHHHHHHHHHh
Confidence 9999999985432 11 01 12345566666544221 2477788878 9997 46555555555554
Q ss_pred HHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC---CCCHHHHHHHHHHHHHc-CCC-e
Q 012112 142 DKFGLS-LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR---AHGLKEVYEAIEIVKLC-GVE-N 215 (471)
Q Consensus 142 ~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R---~~t~~~~~~ai~~~~~~-G~~-~ 215 (471)
+..++. ....+|++++- +.+..-+.+.+.. .++.+.+-|.+++..+.+-+ .++.+++.++++...+. |-. .
T Consensus 176 ~~~g~~~s~r~ItVsT~G--~~~~i~~l~~~~~-~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~ 252 (345)
T PRK14466 176 APYGYGWSPKRITVSTVG--LKKGLKRFLEESE-CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVS 252 (345)
T ss_pred hccccCcCCceEEEEcCC--CchHHHHHhhccC-cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEE
Confidence 433321 23589998875 3333333333344 47889999999999998865 46789999988875433 221 2
Q ss_pred eEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 216 WSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 216 v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+..-||=|+ ..+.++..+..+++..++ .||.+-++.+.||.++ ..|+++...+. .+.|.++|+..
T Consensus 253 ~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~~---------~~~s~~~~~~F----~~~L~~~gi~~ 317 (345)
T PRK14466 253 FEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVDL---------EGSDMARMEAF----RDYLTSHGVFT 317 (345)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCCC---------cCCCHHHHHHH----HHHHHHCCCcE
Confidence 556666676 789999999999998876 7899999998887532 23665544433 45688889754
No 126
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.72 E-value=4.8e-06 Score=85.18 Aligned_cols=203 Identities=19% Similarity=0.285 Sum_probs=130.4
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCee-EEEEcCCCCCCCCHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLE-TVFFGGGTPSLVPPRFVSSILDTLT 141 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~-~i~fGGGTps~l~~~~l~~ll~~l~ 141 (471)
|+.+|.||.-... |. .+.-.....++.+..-....... +.++. -+|.|+|.|.+ +.+.+.++++.+.
T Consensus 115 C~l~C~fC~t~~~--g~------~r~lt~~Eiv~qv~~~~~~~~~~---~~~v~nVvfmGmGEPLl-n~d~v~~~l~~l~ 182 (355)
T TIGR00048 115 CALGCTFCATAKG--GF------NRNLEASEIIGQVLRVQKINNET---GERVSNVVFMGMGEPLL-NLNEVVKAMEIMN 182 (355)
T ss_pred CCCcCCCCCCCCC--CC------CCCCCHHHHHHHHHHHHHHhhhc---CCCeeEEEEecCCchhh-CHHHHHHHHHHhh
Confidence 9999999986432 11 01122333344332211111111 12355 45556699965 7778888888886
Q ss_pred HHc--CCCCCcEEEEEecCCCCCHHHHHHHHHCCCC-EEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHH-HHHcCCC
Q 012112 142 DKF--GLSLDAEISMEMDPGTFDARKMEELMDLGVN-RVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEI-VKLCGVE 214 (471)
Q Consensus 142 ~~~--~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~-~~~~G~~ 214 (471)
+.. +++. ..++++++-- ...++.|.+.+.+ .+.+.+-+.+++..+.+ +|.++.+++.++++. +++.|..
T Consensus 183 ~~~g~~i~~-~~itisT~G~---~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~ 258 (355)
T TIGR00048 183 DDFGLGISK-RRITISTSGV---VPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRR 258 (355)
T ss_pred cccccCcCC-CeEEEECCCc---hHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCE
Confidence 543 3422 3788887652 2567888786765 68999999999999886 567789999988874 4556643
Q ss_pred -eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 215 -NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 215 -~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+..-+|-|+ ..+.+++.+..+++..++ -+|.+-++.+.++.. +..|+.+. .....+.|.+.|+
T Consensus 259 VtieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPynp~~~~~---------~~~ps~e~----i~~f~~~L~~~gi 323 (355)
T TIGR00048 259 VTFEYVLLDGV-NDQVEHAEELAELLKGTK-CKVNLIPWNPFPEAD---------YERPSNEQ----IDRFAKTLMSYGF 323 (355)
T ss_pred EEEEEEEECCC-CCCHHHHHHHHHHHhcCC-CceEEEecccCCCCC---------CCCCCHHH----HHHHHHHHHHCCC
Confidence 2456666665 567899999999988886 478777777665443 23455544 3334567888888
Q ss_pred cee
Q 012112 294 RHY 296 (471)
Q Consensus 294 ~~y 296 (471)
...
T Consensus 324 ~v~ 326 (355)
T TIGR00048 324 TVT 326 (355)
T ss_pred eEE
Confidence 764
No 127
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.68 E-value=2.1e-06 Score=88.26 Aligned_cols=176 Identities=14% Similarity=0.222 Sum_probs=122.7
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
|+.+|.||..+....... . -..+..+++++.+++ ... ...|. +-|-||.|++......+.+... .+
T Consensus 18 CNL~C~YC~~~~~~~~~~-~---Ms~etle~~i~~~~~----~~~----~~~v~-~~w~GGEPlL~~~~f~~~~~~l-~~ 83 (378)
T COG0641 18 CNLDCKYCFYLEKESLQR-I---MSDETLEEYVRQYIA----ASN----GDKVT-FTWQGGEPLLAGLDFYRKAVAL-QQ 83 (378)
T ss_pred cCCCCCeeCcccCCCCCC-C---CCHHHHHHHHHHHHh----hCC----CCeeE-EEEECCccccchHHHHHHHHHH-HH
Confidence 999999998765432110 0 123344455554432 111 12244 5555789998766665555544 44
Q ss_pred HcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc---CCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee
Q 012112 143 KFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV---QAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 143 ~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv---QS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
.+.-......++-+|.-.+|++..+.+++.|+ .|-|.+ +..+|..+...+-.-|.+.+.++++.+++.+++ +++-
T Consensus 84 k~~~~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~-~~~~ 161 (378)
T COG0641 84 KYANGKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVD-FNTL 161 (378)
T ss_pred HHhcCCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCc-EEEE
Confidence 44334556667889999999999999999999 676644 556666666665566899999999999998876 5554
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
.. +..|+.+...+.++++.+.+..++++.++....
T Consensus 162 ~v--v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~ 196 (378)
T COG0641 162 TV--VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESD 196 (378)
T ss_pred EE--EchhHhhCHHHHHHHHHHcccceEEEEecccCC
Confidence 44 789999999999999999999999997765443
No 128
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.67 E-value=2e-06 Score=88.05 Aligned_cols=207 Identities=19% Similarity=0.265 Sum_probs=135.2
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCC--CCCCCCeeEEEEcC-CCCCCCCHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPG--HKTSPPLETVFFGG-GTPSLVPPRFVSSILDT 139 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~--~~~~~~v~~i~fGG-GTps~l~~~~l~~ll~~ 139 (471)
|+.+|.||.-... |. .+.-.....++.+..-.+.+... ...+..+..|.|-| |.|. ++.+.+.++++.
T Consensus 131 C~m~C~FCatg~~--g~------~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPL-lN~d~V~~~i~~ 201 (373)
T PRK14459 131 CGMACPFCATGQG--GL------TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPL-ANYKRVVAAVRR 201 (373)
T ss_pred CCCcCCCCCCCCC--CC------CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcch-hhHHHHHHHHHH
Confidence 9999999985432 11 11122344444433222221111 00123477888878 9995 477888888888
Q ss_pred HHHH----cCCCCCcEEEEEecCCCCCHHHHHHHHHCCCC-EEEEccCCCCHHHHHHcC---CCCCHHHHHHHHHHH-HH
Q 012112 140 LTDK----FGLSLDAEISMEMDPGTFDARKMEELMDLGVN-RVSLGVQAFQDELLKSCG---RAHGLKEVYEAIEIV-KL 210 (471)
Q Consensus 140 l~~~----~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l~---R~~t~~~~~~ai~~~-~~ 210 (471)
+.+. ++++ ...+|+++.- + ...++.|.+.|.. +|.+.+-|.|++..+.+- |.++.+++.++++.. ++
T Consensus 202 l~~~~~~g~gis-~r~ITvST~G--l-~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~ 277 (373)
T PRK14459 202 ITAPAPEGLGIS-ARNVTVSTVG--L-VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADA 277 (373)
T ss_pred HhCcccccCCcc-CCEEEEECcC--c-hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence 8762 4443 2378887642 2 2467777787776 799999999999998864 568999999996655 45
Q ss_pred cCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHH
Q 012112 211 CGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSM 287 (471)
Q Consensus 211 ~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~ 287 (471)
.|.. .++.-+|=|+ ..+.++.++..+.+..++ +-||.+-+|.+.++.++ ..|+.+...+ ..+.
T Consensus 278 ~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y---------~~~~~~~~~~----F~~~ 343 (373)
T PRK14459 278 TGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW---------TASPPEVERE----FVRR 343 (373)
T ss_pred hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC---------cCCCHHHHHH----HHHH
Confidence 5764 1445555565 678899999999988885 56899999988776643 2355544333 3567
Q ss_pred HHHCCCcee
Q 012112 288 LSSAGYRHY 296 (471)
Q Consensus 288 L~~~Gy~~y 296 (471)
|.++|+...
T Consensus 344 L~~~gi~~t 352 (373)
T PRK14459 344 LRAAGVPCT 352 (373)
T ss_pred HHHCCCeEE
Confidence 889998654
No 129
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.66 E-value=2.4e-06 Score=86.93 Aligned_cols=201 Identities=17% Similarity=0.264 Sum_probs=130.7
Q ss_pred CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHHHHHHHHHHH
Q 012112 62 FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPPRFVSSILDTL 140 (471)
Q Consensus 62 FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~~l~~ll~~l 140 (471)
-|+.+|.||+-... |. .+.-..+.++.|+....... +..+..|-|-| |.|.+ +.+.+.+.++.+
T Consensus 110 GC~~~C~FC~tg~~--g~----------~rnlt~~EIv~qv~~~~~~~--~~~~~~IvfmGmGEPll-n~~~v~~~i~~l 174 (345)
T PRK14457 110 GCPMACDFCATGKG--GL----------KRSLKAHEIVDQVLTVQEDM--QRRVSHVVFMGMGEPLL-NIDEVLAAIRCL 174 (345)
T ss_pred CCCCcCCcCCCCCC--CC----------ccccCHHHHHHHHHHHHHHh--cCCCCEEEEEecCcccc-CHHHHHHHHHHH
Confidence 39999999976432 11 01113455555555443222 12366666666 99975 777677777777
Q ss_pred HHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCC-------CEEEEccCCCCHHHHHHcC---CCCCHHHHHHHHHH-HH
Q 012112 141 TDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV-------NRVSLGVQAFQDELLKSCG---RAHGLKEVYEAIEI-VK 209 (471)
Q Consensus 141 ~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv-------nrvsiGvQS~~d~~L~~l~---R~~t~~~~~~ai~~-~~ 209 (471)
.+.++++. ..+|+.+.- ..+.++.|.+.++ ..+.+.+-+.+++..+.+. +.++.+++.+++.. +.
T Consensus 175 ~~~~~i~~-r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~ 250 (345)
T PRK14457 175 NQDLGIGQ-RRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVA 250 (345)
T ss_pred hcccCCcc-CceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 65455532 367776532 3345777776662 3589999999999999884 45678888777654 55
Q ss_pred HcCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q 012112 210 LCGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSML 288 (471)
Q Consensus 210 ~~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L 288 (471)
+.|-. .+.+=+|=|+ ..+.++..+..+++..++. ||.+-++.+.++.+ +..|+.+...+ ..+.|
T Consensus 251 ~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~---------~~~ps~e~i~~----f~~~L 315 (345)
T PRK14457 251 ITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVE---------FQRPSPKRIQA----FQRVL 315 (345)
T ss_pred HhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCC---------CCCCCHHHHHH----HHHHH
Confidence 66632 2566677776 6889999999999998864 78888877665543 34566655443 34568
Q ss_pred HHCCCcee
Q 012112 289 SSAGYRHY 296 (471)
Q Consensus 289 ~~~Gy~~y 296 (471)
.++|+...
T Consensus 316 ~~~Gi~vt 323 (345)
T PRK14457 316 EQRGVAVS 323 (345)
T ss_pred HHCCCeEE
Confidence 88888653
No 130
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.60 E-value=3.2e-06 Score=81.16 Aligned_cols=219 Identities=13% Similarity=0.177 Sum_probs=143.3
Q ss_pred EEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHH
Q 012112 56 AYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSS 135 (471)
Q Consensus 56 lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ 135 (471)
.-|-=+-|..+|.||+...... .+ -+.....+-.+++ +++.... .-+.+|-= ++-+- -...++.+
T Consensus 73 FmImG~~CTR~C~FC~V~~g~P----~~--lD~~EP~rvAeaV-~~mgLky------VViTsVdR-DDL~D-GGA~hfa~ 137 (306)
T COG0320 73 FMILGDICTRRCRFCDVKTGRP----NP--LDPDEPERVAEAV-KDMGLKY------VVITSVDR-DDLPD-GGAQHFAE 137 (306)
T ss_pred EeeccchhccCCCccccCCCCC----CC--CCCchHHHHHHHH-HHhCCCe------EEEEeecc-ccccc-cchHHHHH
Confidence 3333444999999999764321 11 2334444444443 3443211 01122110 11110 13467889
Q ss_pred HHHHHHHHcCCCCCcEEEEEe-cCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 012112 136 ILDTLTDKFGLSLDAEISMEM-DPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG- 212 (471)
Q Consensus 136 ll~~l~~~~~l~~~~eitiE~-~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G- 212 (471)
.+++|++.- ...+||+ -|+-- ..+.++.+.++|.+-+.-.+||. +++...+.++.+.+.-++.++.+++.+
T Consensus 138 ~i~~Ire~~-----P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P 211 (306)
T COG0320 138 CIRAIRELN-----PQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGP 211 (306)
T ss_pred HHHHHHhhC-----CCceEEEeCccccCCHHHHHHHHhcCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCC
Confidence 999998863 3578888 45433 78999999999999899999986 667777888999999999999999997
Q ss_pred -CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 213 -VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 213 -~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
+. ....+|+|| |||.+++.++++.+.+.++|-+++-+|.- | |.-+--+ .++-.| +-|....+.-.+.
T Consensus 212 ~i~-TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S~~HlpV--~ryv~P------eeF~~~~~~a~~~ 279 (306)
T COG0320 212 DIP-TKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-SRKHLPV--QRYVTP------EEFDELEEVAEEM 279 (306)
T ss_pred Ccc-cccceeeec-CCcHHHHHHHHHHHHHcCCCEEEeccccC-C-ccccCCc--eeccCH------HHHHHHHHHHHHc
Confidence 54 578899999 99999999999999999999998877642 2 2111111 111122 2344455566688
Q ss_pred CCceeccccccCCCcc
Q 012112 292 GYRHYEISSYGEDGYE 307 (471)
Q Consensus 292 Gy~~yeis~fa~~g~~ 307 (471)
||.+-..+-+.|..|.
T Consensus 280 GF~~v~sgPlvRSSYh 295 (306)
T COG0320 280 GFLHVASGPLVRSSYH 295 (306)
T ss_pred cchhhccCcccccccc
Confidence 9987655556665443
No 131
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.59 E-value=3.9e-06 Score=83.56 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=130.5
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
|.+.|.||.-..........+ ..-......++.+.+|+... +.....|.+|.-|-.+.+.+.-..+.+.+.+
T Consensus 39 C~h~C~YCYa~~~~~~~~~~~--~~v~vk~n~~e~l~~el~~~------~~k~~~i~is~~TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 39 CSHGCIYCYARPMHGYLPKSP--TKVNVKENLLELLERELRKP------GPKRTVIAISSVTDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred CCCCCceeecccccccccCCC--ceeeechhHHHHHHHHHhhc------cCCceEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 999999997654422110000 00122344778888887643 2346778898888777675555555554443
Q ss_pred HcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEee
Q 012112 143 KFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 143 ~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
... ..+..++|.+.-..+ +-+.|..++.-+--+|.+.|-+.++++.+.+--. -+.++-.+|++.+.++|++ +.+-
T Consensus 111 i~~-~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~-~~v~ 188 (297)
T COG1533 111 ILL-KYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIP-VGLF 188 (297)
T ss_pred HHH-HcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCe-EEEE
Confidence 321 123467777643222 5678888888887889999999988899988655 5899999999999999998 5555
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCC
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQG 257 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pg 257 (471)
+--=+|+.|.+++.+.++.+.+.++.++....+.+..+
T Consensus 189 v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 189 VAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred EecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 55558999999999999999999999988877766544
No 132
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.59 E-value=8.5e-06 Score=83.07 Aligned_cols=202 Identities=16% Similarity=0.254 Sum_probs=133.7
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCC--CCCeeEEEEcCCCCCCCCHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKT--SPPLETVFFGGGTPSLVPPRFVSSILDTL 140 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~--~~~v~~i~fGGGTps~l~~~~l~~ll~~l 140 (471)
|+-+|.||.-... |. .+.-.++.+++|+......+.. ...-.-+|.|||.|. ++.+.+.++++.+
T Consensus 120 C~~~C~FCatg~~--g~----------~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL-~N~d~v~~~l~~l 186 (356)
T PRK14462 120 CKVGCAFCLTAKG--GF----------VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPL-DNLDNVSKAIKIF 186 (356)
T ss_pred CCCCCccCCCCCC--CC----------cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccc-cCHHHHHHHHHHh
Confidence 9999999965432 11 1122344555555433221110 011267889999995 5888899999999
Q ss_pred HHHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCC-CEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHH-HHHHcCCC
Q 012112 141 TDKFGLS-LDAEISMEMDPGTFDARKMEELMDLGV-NRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIE-IVKLCGVE 214 (471)
Q Consensus 141 ~~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~Gv-nrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~-~~~~~G~~ 214 (471)
++.-++. ....+|+++.- +. +.++.|...+. -.+.+.+=+.|++..+.+ ++.+..+++.++++ .+++.|-.
T Consensus 187 ~~~~Gl~~~~r~itVsTsG--~~-~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~ 263 (356)
T PRK14462 187 SENDGLAISPRRQTISTSG--LA-SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKR 263 (356)
T ss_pred cCccCCCcCCCceEEECCC--Ch-HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCe
Confidence 8743331 12367888743 22 46666777655 568888999999999876 45677889998887 44455543
Q ss_pred -eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 215 -NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 215 -~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+..=+|-|+ ..+.++.++..+++..++ .+|.+-+|.+.++.++ +.|+.+...+ ..+.|.++|.
T Consensus 264 i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~---------~~ps~e~i~~----f~~~l~~~gi 328 (356)
T PRK14462 264 VMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF---------ERPSLEDMIK----FQDYLNSKGL 328 (356)
T ss_pred EEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC---------CCCCHHHHHH----HHHHHHHCCC
Confidence 2456667676 778999999999998885 5899999887766543 4466655443 3456888887
Q ss_pred ce
Q 012112 294 RH 295 (471)
Q Consensus 294 ~~ 295 (471)
..
T Consensus 329 ~v 330 (356)
T PRK14462 329 LC 330 (356)
T ss_pred cE
Confidence 65
No 133
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.52 E-value=8e-06 Score=80.44 Aligned_cols=177 Identities=15% Similarity=0.227 Sum_probs=122.4
Q ss_pred cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHH-HHHHHHHHHHhccCCCC-CCCCeeEEEE-cCCCCCCCCHHHHHHHH
Q 012112 61 PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSN-YIQLLCREIIATKPGHK-TSPPLETVFF-GGGTPSLVPPRFVSSIL 137 (471)
Q Consensus 61 PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~-yv~~l~~Ei~~~~~~~~-~~~~v~~i~f-GGGTps~l~~~~l~~ll 137 (471)
.+|.++|-||-........ ....+. ..+.+.++++......+ .+..++.+-| |.|.||+-+ .|.+++
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~--------~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~--~L~elI 101 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGT--------PERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYP--NLGELI 101 (296)
T ss_pred hhhcCCCeEEecccCCCCC--------CCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCccccc--CHHHHH
Confidence 3599999999763221110 111122 23557777776544321 1235676666 678999744 689999
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC---CHHHHHHHHHHHHHc--C
Q 012112 138 DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH---GLKEVYEAIEIVKLC--G 212 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~---t~~~~~~ai~~~~~~--G 212 (471)
+.+++.-. ...-+-+|- ++ ++.++.|. -++-|++.+.+.|++..+.++|+| +.+.+.+.++.+++. |
T Consensus 102 ~~~k~~g~----~~tflvTNg-sl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~ 173 (296)
T COG0731 102 EEIKKRGK----KTTFLVTNG-SL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKG 173 (296)
T ss_pred HHHHhcCC----ceEEEEeCC-Ch-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCC
Confidence 99987632 133344454 33 78888777 468999999999999999999997 578899999999884 5
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
-.-+.+-++=|+ ..+.+++.+-.+.+....|+.|-+-.++-.+
T Consensus 174 ~~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~rpg 216 (296)
T COG0731 174 RTVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYMRPG 216 (296)
T ss_pred cEEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCccCC
Confidence 555667777777 4455667778888888999999888776543
No 134
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.44 E-value=1.5e-05 Score=81.09 Aligned_cols=208 Identities=14% Similarity=0.203 Sum_probs=126.8
Q ss_pred eEEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHH
Q 012112 54 TSAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPPR 131 (471)
Q Consensus 54 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~ 131 (471)
..++|---= |+.+|.||.-+.. |. .+.-.....+ +++......+. ...+..|-|-| |.|.+ +.+
T Consensus 99 ~t~cvSsq~GC~l~C~FC~t~~~--G~------~rnlt~~EIv----~Qv~~~~~~~~-~~~v~~VvfmGmGEPL~-N~d 164 (348)
T PRK14467 99 LTLCVSSQVGCAVGCKFCATAKD--GL------IRNLRTAEII----DQYIQVQKFLG-ENRIRNVVFMGMGEPLA-NYE 164 (348)
T ss_pred cEEEEEcCCCCCCcCcCCCCCCC--CC------cCCCCHHHHH----HHHHHHHHHhc-cCCCCeEEEEccChhhc-CHH
Confidence 344444444 9999999976532 21 0112233344 44332222111 12355566656 99964 888
Q ss_pred HHHHHHHHHHHH--cCCCCCcEEEEEecCCCCCHHHHHHHHHC----CCCEEEEccCCCCHHHHHHcCC---CCCHHHHH
Q 012112 132 FVSSILDTLTDK--FGLSLDAEISMEMDPGTFDARKMEELMDL----GVNRVSLGVQAFQDELLKSCGR---AHGLKEVY 202 (471)
Q Consensus 132 ~l~~ll~~l~~~--~~l~~~~eitiE~~P~~l~~e~l~~l~~~----GvnrvsiGvQS~~d~~L~~l~R---~~t~~~~~ 202 (471)
.+.++++.+.+. ++++. ..+|++++- .+ ..+..+... .+ .+.+.+-+.|++..+.+-+ .++.+++.
T Consensus 165 ~v~~~l~~l~~~~gl~~~~-r~itvsT~G-~~--~~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~ 239 (348)
T PRK14467 165 NVRKAVQIMTSPWGLDLSK-RRITISTSG-II--HQIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELM 239 (348)
T ss_pred HHHHHHHHHcChhccCcCC-CcEEEECCC-Ch--hHHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHH
Confidence 888888888653 33332 378888763 22 223333332 34 5779999999999998755 45777777
Q ss_pred HHHHHHH-HcCCCeeEeeeecCCCC--CCHHHHHHHHHHHHhCC-CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHH
Q 012112 203 EAIEIVK-LCGVENWSLDLISSLPH--QTPQMWEESLRRTVGAQ-PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSA 278 (471)
Q Consensus 203 ~ai~~~~-~~G~~~v~~DlI~GlPg--qT~e~~~~~l~~~~~l~-p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~ 278 (471)
++++... +.|-. |.+-.++ +|| .+.++.++..+++..++ ..||.+-++.+.++..+ +.|+.+...
T Consensus 240 ~~~~~~~~~~g~~-V~ieyvL-IpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~---------~~ps~e~i~ 308 (348)
T PRK14467 240 EVLKQYPLPPGRR-IMLEYVL-IKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY---------ERPELERVY 308 (348)
T ss_pred HHHHHHHHhcCCe-EEEEEEE-ECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC---------CCCCHHHHH
Confidence 7776433 45554 5544444 455 66999999999998874 56788888877665543 456665433
Q ss_pred HHHHHHHHHHHHCCCce
Q 012112 279 NFYRMASSMLSSAGYRH 295 (471)
Q Consensus 279 ~~~~~~~~~L~~~Gy~~ 295 (471)
+ ..+.|.++|+..
T Consensus 309 ~----f~~~L~~~gi~v 321 (348)
T PRK14467 309 K----FQKILWDNGIST 321 (348)
T ss_pred H----HHHHHHHCCCcE
Confidence 3 456788888865
No 135
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.43 E-value=8.7e-05 Score=76.22 Aligned_cols=201 Identities=14% Similarity=0.244 Sum_probs=126.4
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCC-----CCCCe-eEEEEcCCCCCCCCHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHK-----TSPPL-ETVFFGGGTPSLVPPRFVSSI 136 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~-----~~~~v-~~i~fGGGTps~l~~~~l~~l 136 (471)
|+.+|.||.-+....+ ..-.. +.+++++......+. .+.++ .-|++|+|.|.+ +.+.+.+.
T Consensus 113 C~~~C~FC~t~~~g~~--------rnLt~----~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~-N~d~v~~a 179 (372)
T PRK11194 113 CALECKFCSTAQQGFN--------RNLRV----SEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL-NLNNVVPA 179 (372)
T ss_pred CCCcCCCCCCCCCCCC--------CcCCH----HHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc-CHHHHHHH
Confidence 9999999986543111 11122 334444432221110 01223 458899999964 77788787
Q ss_pred HHHHHHHc--CCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC---CCCCHHHHHHHHHH-HHH
Q 012112 137 LDTLTDKF--GLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG---RAHGLKEVYEAIEI-VKL 210 (471)
Q Consensus 137 l~~l~~~~--~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~---R~~t~~~~~~ai~~-~~~ 210 (471)
++.+.+.. +++. ..+|+++.- +.+ .++.|.+..--.+.+.+-+.|++..+.+- +.+..+++.+++.. +.+
T Consensus 180 l~~l~~~~g~~i~~-r~itVsTsG--~~~-~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~ 255 (372)
T PRK11194 180 MEIMLDDFGFGLSK-RRVTLSTSG--VVP-ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEK 255 (372)
T ss_pred HHHHhhhhccCcCC-CeEEEECCC--Cch-HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 88777543 3432 378888754 233 44555554423677788999999988764 45677888777654 444
Q ss_pred cC-----CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 211 CG-----VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 211 ~G-----~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
.| + .+..=+|-|+ ..+.++.++..+++..++ .+|.+-+|.+.+|.++ ..|+.+...+ ..
T Consensus 256 ~~~~~rrI-~irypLIpGv-NDs~e~a~~La~ll~~l~-~~VnLIPYN~~~~~~~---------~~ps~e~v~~----f~ 319 (372)
T PRK11194 256 SNANQGRV-TVEYVMLDHV-NDGTEHAHQLAELLKDTP-CKINLIPWNPFPGAPY---------GRSSNSRIDR----FS 319 (372)
T ss_pred cccCCCeE-EEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEecCCCCCCCCC---------CCCCHHHHHH----HH
Confidence 43 3 2566677776 688999999999998886 4888888887665432 3466554333 35
Q ss_pred HHHHHCCCcee
Q 012112 286 SMLSSAGYRHY 296 (471)
Q Consensus 286 ~~L~~~Gy~~y 296 (471)
+.|.++|+...
T Consensus 320 ~~L~~~Gi~vt 330 (372)
T PRK11194 320 KVLMEYGFTVI 330 (372)
T ss_pred HHHHHCCCeEE
Confidence 66888888653
No 136
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.42 E-value=9.2e-05 Score=75.44 Aligned_cols=201 Identities=18% Similarity=0.264 Sum_probs=126.5
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCe-eEEEEcCCCCCCCCHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPL-ETVFFGGGTPSLVPPRFVSSILDTLT 141 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v-~~i~fGGGTps~l~~~~l~~ll~~l~ 141 (471)
|+.+|.||.-... |. .+.--++.+++++......+. ..+ .-|++|||.|.+ +.+.+.++++.++
T Consensus 111 C~~~C~FC~tg~~--G~----------~rnlt~~EI~~qv~~~~~~~~--~~~~gvV~mggGEPLl-n~d~v~~~l~~l~ 175 (342)
T PRK14454 111 CRMGCKFCASTIG--GM----------VRNLTAGEMLDQILAAQNDIG--ERISNIVLMGSGEPLD-NYENVMKFLKIVN 175 (342)
T ss_pred CCCcCCcCCCCCC--CC----------cccCCHHHHHHHHHHHHHHhc--CCCCCEEEECCchhhc-CHHHHHHHHHHHh
Confidence 9999999975432 21 111223445555543322111 123 348899999964 8888999999998
Q ss_pred HHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCC-CEEEEccCCCCHHHHHHcC---CCCCHHHHHHHHHH-HHHcCCC-
Q 012112 142 DKFGLS-LDAEISMEMDPGTFDARKMEELMDLGV-NRVSLGVQAFQDELLKSCG---RAHGLKEVYEAIEI-VKLCGVE- 214 (471)
Q Consensus 142 ~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~Gv-nrvsiGvQS~~d~~L~~l~---R~~t~~~~~~ai~~-~~~~G~~- 214 (471)
+..++. ....++++++- +.+. +..+.+.+. ..+.+.+=+.|++..+.+- +....+++.++++. +.+.|..
T Consensus 176 ~~~gi~~~~r~itvsTsG--~~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv 252 (342)
T PRK14454 176 SPYGLNIGQRHITLSTCG--IVPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRI 252 (342)
T ss_pred cccccCcCCCceEEECcC--ChhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEE
Confidence 643321 12367888743 2333 455555431 2489999999999998765 34567777766654 4555654
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+..=+|=|+ ..+.++.++..+++..+ +.+|.+-++.+..+. ++..|+++...+ ..+.|.+.|+.
T Consensus 253 ~iey~LI~gv-NDs~eda~~La~llk~l-~~~VnLiPyn~~~~~---------~~~~ps~e~l~~----f~~~l~~~gi~ 317 (342)
T PRK14454 253 TFEYALVKGV-NDSKEDAKELGKLLKGM-LCHVNLIPVNEVKEN---------GFKKSSKEKIKK----FKNILKKNGIE 317 (342)
T ss_pred EEEEEeECCC-CCCHHHHHHHHHHHhcC-CceEEEEecCCCCCC---------CCCCCCHHHHHH----HHHHHHHCCCc
Confidence 1445566666 67899999999988877 457888777765544 234566654333 35678888986
Q ss_pred ee
Q 012112 295 HY 296 (471)
Q Consensus 295 ~y 296 (471)
..
T Consensus 318 v~ 319 (342)
T PRK14454 318 TT 319 (342)
T ss_pred EE
Confidence 54
No 137
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.41 E-value=1.5e-06 Score=81.97 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=130.7
Q ss_pred EEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC-CHHHHH
Q 012112 56 AYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV-PPRFVS 134 (471)
Q Consensus 56 lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l-~~~~l~ 134 (471)
+-|.--=|.-.|.||...+...- ......---+|++++|.+..+..+. ..+..|..---+. ....+.
T Consensus 87 lsIKtGGCsEDCkYCaQSSRy~T-------GvKA~klmk~DeVi~~Ak~AK~~GS-----TRFCmGaAWRD~~GRk~~fk 154 (380)
T KOG2900|consen 87 LSIKTGGCSEDCKYCAQSSRYDT-------GVKAEKLMKVDEVIKEAKEAKRNGS-----TRFCMGAAWRDMKGRKSAFK 154 (380)
T ss_pred EEeecCCcccccchhhhhccccc-------chhHHHHhhHHHHHHHHHHHHhcCC-----ceeecchhhhhhccchhHHH
Confidence 44444459999999987654210 1122334457889888886654432 2233332111111 124577
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+|++.|++.-++. .|+.+ .-+.++.+....|+++|.+-..-.+.+--+-.-+ +--..+.++-++.+..++++|++
T Consensus 155 ~IlE~ikevr~Mg--mEvCv--TLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYsk-vItTRtYDdRL~Ti~nvr~aGik 229 (380)
T KOG2900|consen 155 RILEMIKEVRDMG--MEVCV--TLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSK-VITTRTYDDRLQTIKNVREAGIK 229 (380)
T ss_pred HHHHHHHHHHcCC--ceeee--eeccccHHHHHHHHhccceecccCccchhhhhcc-cceecchHHHHHHHHHHHHhcce
Confidence 7888887765443 34443 4567899999999999999888888875444333 33345789999999999999997
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCC--CCcEEEEeccccCCChhhhc
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQ--PKHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~--p~his~y~l~~~pgT~l~~~ 263 (471)
|...-|+|| ||..+|-.-.+..+..+. |+.+-+..|...+|||+...
T Consensus 230 -vCsGGIlGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 230 -VCSGGILGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred -ecccccccc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 888999999 999988777776666664 67888999999999999875
No 138
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.1e-05 Score=73.89 Aligned_cols=167 Identities=20% Similarity=0.336 Sum_probs=118.1
Q ss_pred CeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 53 ~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
...+.|+.-=|+.+|.||..+...... .....+.....++.++.... ...+.|.|.||.|++ ..+.
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~-------~~~~~~~~~~e~l~~~~~~~------~~~~gvt~SGGEP~~-q~e~ 100 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRG-------REVSGEEVSPEVLVDKAFYS------ESGGGVTFSGGEPTL-QAEF 100 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhccc-------ccCchhhcCHHHHHHHhhhc------CCCCEEEEECCcchh-hHHH
Confidence 477888888899999999887653210 01112222334444444332 246789999999986 7778
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+.+++..+++. + ..+.+++|- .++++.++.+.+. ++.+.+-+=.++++.-+.+-- .+.+.+.+.++.+.+.|
T Consensus 101 ~~~~~~~ake~-G----l~~~l~TnG-~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg-~~~~~vl~~~~~l~~~g 172 (260)
T COG1180 101 ALDLLRAAKER-G----LHVALDTNG-FLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTG-ADNEPVLENLELLADLG 172 (260)
T ss_pred HHHHHHHHHHC-C----CcEEEEcCC-CCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhC-CCcHHHHHHHHHHHcCC
Confidence 88888888875 3 467888874 6788888888887 799999999999996555542 23389999999999998
Q ss_pred CCeeEeeeecCCCCC--CHHHHHHHHHHHHhCC
Q 012112 213 VENWSLDLISSLPHQ--TPQMWEESLRRTVGAQ 243 (471)
Q Consensus 213 ~~~v~~DlI~GlPgq--T~e~~~~~l~~~~~l~ 243 (471)
.. |.+-..+ .||+ ..+++++-.+++.++.
T Consensus 173 ~~-ve~r~lv-iPg~~d~~e~i~~i~~~i~~~~ 203 (260)
T COG1180 173 VH-VEIRTLV-IPGYNDDEEEIRELAEFIADLG 203 (260)
T ss_pred Ce-EEEEEEE-ECCCCCCHHHHHHHHHHHHhcC
Confidence 86 3332221 4664 7899999999998754
No 139
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.34 E-value=5.5e-05 Score=75.54 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=111.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
...|.|.||.|.+ .++.+.++++.+++. + ..+++++|- .+..+.++.+.. .++.+.+.+.+.+++..+.+..
T Consensus 126 ~~~V~~sGGEPll-~~~~l~~l~~~~k~~-g----~~~~i~TnG-~~~~~~~~~ll~-~~d~~~isl~~~~~~~~~~~~g 197 (295)
T TIGR02494 126 GGGVTLSGGEPLL-QPEFALALLQACHER-G----IHTAVETSG-FTPWETIEKVLP-YVDLFLFDIKHLDDERHKEVTG 197 (295)
T ss_pred CCcEEeeCcchhc-hHHHHHHHHHHHHHc-C----CcEeeeCCC-CCCHHHHHHHHh-hCCEEEEeeccCChHHHHHHhC
Confidence 3468888999985 777788999988764 2 357888885 455566776665 4688899999999998887744
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeEeee--ecCCCCCCHHHHHHHHHHHHhCC--CCcEEEEeccccCCChhhh---cccCC
Q 012112 195 AHGLKEVYEAIEIVKLCGVENWSLDL--ISSLPHQTPQMWEESLRRTVGAQ--PKHVSVYDLQVEQGTKFGI---LYTPG 267 (471)
Q Consensus 195 ~~t~~~~~~ai~~~~~~G~~~v~~Dl--I~GlPgqT~e~~~~~l~~~~~l~--p~his~y~l~~~pgT~l~~---~~~~g 267 (471)
.+.+.+.+.++.+.+.|.. +.+-. |-|+ ..+.+++.+.++++.+++ +.++.+.++.+....++.. .+.-.
T Consensus 198 -~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~-n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~ 274 (295)
T TIGR02494 198 -VDNEPILENLEALAAAGKN-VVIRIPVIPGF-NDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLGENKYRQLGREYPDS 274 (295)
T ss_pred -CChHHHHHHHHHHHhCCCc-EEEEeceeCCc-CCCHHHHHHHHHHHHHhccCCceEEecCCCchhHHHHHHhCCCCccC
Confidence 4678899999999999875 54443 4343 356789999999999998 6788877777665555432 22222
Q ss_pred CCCCCCHHHHHHHH
Q 012112 268 EFPLPTETQSANFY 281 (471)
Q Consensus 268 ~~~~p~~~~~~~~~ 281 (471)
..+.|++++..+..
T Consensus 275 ~~~~p~~~~~~~~~ 288 (295)
T TIGR02494 275 EIPDPAEEQLLELK 288 (295)
T ss_pred CCCCCCHHHHHHHH
Confidence 34457766655533
No 140
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.24 E-value=0.00015 Score=73.98 Aligned_cols=200 Identities=17% Similarity=0.227 Sum_probs=125.6
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPPRFVSSILDTLT 141 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~~l~~ll~~l~ 141 (471)
|+.+|.||.-.....+ +.- -++.+++++...... +.+++.|-|-| |.|.+ +. .+.+.++.+.
T Consensus 110 C~~~C~FC~tg~~g~~--------rnL----t~~EIv~qv~~~~~~---~~~i~~IvfmGmGEPLl-n~-~v~~~i~~l~ 172 (347)
T PRK14453 110 CGFGCRFCATGSIGLK--------RNL----TADEITDQLLYFYLN---GHRLDSISFMGMGEALA-NP-ELFDALKILT 172 (347)
T ss_pred cCCCCCCCCCCCCCCc--------ccC----CHHHHHHHHHHHHhc---CCCcceEEEeecCCccC-CH-HHHHHHHHHh
Confidence 9999999986543111 111 234445555433221 23477777877 99975 54 4667777776
Q ss_pred HH--cCCCCCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHHH-HHcCCC
Q 012112 142 DK--FGLSLDAEISMEMDPGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEIV-KLCGVE 214 (471)
Q Consensus 142 ~~--~~l~~~~eitiE~~P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~~-~~~G~~ 214 (471)
+. ++++ ...++++++- .+. -+.+... ..-..+.+.+-+.+++..+.+ ++.+..+++.++++.. .+.|..
T Consensus 173 ~~~~~~~~-~r~itVsT~G-~~~~i~~l~~~--~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~ 248 (347)
T PRK14453 173 DPNLFGLS-QRRITISTIG-IIPGIQRLTQE--FPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRK 248 (347)
T ss_pred cccccCCC-CCcEEEECCC-CchhHHHHHhh--ccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Confidence 63 3332 3468998764 222 3333322 223567789999999988765 4566778887776654 335543
Q ss_pred -eeEeeeecCCCCCCHHHHHHHHHHHHhCC----CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 215 -NWSLDLISSLPHQTPQMWEESLRRTVGAQ----PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 215 -~v~~DlI~GlPgqT~e~~~~~l~~~~~l~----p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
.+..=+|-|+ ..+.+++.+..+++..++ +.+|.+-+|.+.++.+ ..+..|+.+...+ ..+.|.
T Consensus 249 V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~-------~~~~~ps~e~v~~----f~~~L~ 316 (347)
T PRK14453 249 VYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP-------FKFQSSSAGQIKQ----FCSTLK 316 (347)
T ss_pred EEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC-------ccCCCCCHHHHHH----HHHHHH
Confidence 2566777776 678889999999999874 5788888887765531 1244566654333 345788
Q ss_pred HCCCce
Q 012112 290 SAGYRH 295 (471)
Q Consensus 290 ~~Gy~~ 295 (471)
++|+..
T Consensus 317 ~~Gi~v 322 (347)
T PRK14453 317 SAGISV 322 (347)
T ss_pred HCCCcE
Confidence 889864
No 141
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.22 E-value=3.1e-05 Score=76.12 Aligned_cols=169 Identities=16% Similarity=0.262 Sum_probs=115.8
Q ss_pred CCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHH
Q 012112 62 FCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLT 141 (471)
Q Consensus 62 FC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~ 141 (471)
-|+..|.||....-..|...- ......-+.++.++.|+......+ +-+.||.|.+ ..+...++++.++
T Consensus 37 ~C~~~CfYCPvs~~r~gkdvi---yaNErpV~~~eDii~ea~~~~a~G--------asiTGGdPl~-~ieR~~~~ir~LK 104 (353)
T COG2108 37 LCNRSCFYCPVSDERKGKDVI---YANERPVKSVEDIIEEAKLMDALG--------ASITGGDPLL-EIERTVEYIRLLK 104 (353)
T ss_pred ccCCCcccCcCCHHhcCCcce---eecccccCcHHHHHHHHHHhcccc--------ccccCCChHH-HHHHHHHHHHHHH
Confidence 399999999876543322100 011122334567777877654422 2356889964 5566667778888
Q ss_pred HHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee
Q 012112 142 DKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI 221 (471)
Q Consensus 142 ~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI 221 (471)
+.|+ .+.-+.+.+++...+++.++.|.++|++-|-+-.-..+. ...+...+++..|++.|.+ |.+- |
T Consensus 105 ~efG--~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~---------~~~e~~i~~l~~A~~~g~d-vG~E-i 171 (353)
T COG2108 105 DEFG--EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS---------KSSEKYIENLKIAKKYGMD-VGVE-I 171 (353)
T ss_pred Hhhc--cceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccc---------cccHHHHHHHHHHHHhCcc-ceee-c
Confidence 8876 456778888888999999999999999976665421111 2346678889999999886 6664 5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 222 SSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 222 ~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
-++||. .+.+.+-++++.+.+.+-+.+..|.+-+
T Consensus 172 Paipg~-e~~i~e~~~~~~~~~~~FlNiNELE~sE 205 (353)
T COG2108 172 PAIPGE-EEAILEFAKALDENGLDFLNINELEFSE 205 (353)
T ss_pred CCCcch-HHHHHHHHHHHHhcccceeeeeeeeecc
Confidence 677876 3456667788888888999998887654
No 142
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.19 E-value=0.0002 Score=72.69 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=124.8
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTD 142 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~ 142 (471)
|+-+|.||.-... |.. +.....+-++++.. ++. ..+ ....+-+|+|=|.|. ++-+.+.+.++.+++
T Consensus 115 C~m~C~FC~tg~~--g~~------rnlta~EI~~qv~~-~~~---~~~-~~~~niVFmGmGEPL-~N~d~V~~~~~~l~~ 180 (342)
T PRK14465 115 CTLNCKFCATAKL--EFQ------GNLKAHEIVDQVLQ-VEK---IVG-DRATNVVFMGMGEPM-HNYFNVIRAASILHD 180 (342)
T ss_pred CCCCCCCCcCCCC--Ccc------CCCCHHHHHHHHHH-HHH---hcC-CCceEEEEEcCCcch-hhHHHHHHHHHHHhC
Confidence 9999999976432 211 11122333333322 111 111 122455666658995 466777777777765
Q ss_pred H--cCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHHH-HHcCCCee
Q 012112 143 K--FGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEIV-KLCGVENW 216 (471)
Q Consensus 143 ~--~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~~-~~~G~~~v 216 (471)
. ++++. ..||+.++- +.+...+...+..--.++|.+-+-+++....+ ++.+..+++.++++.. ++.|-. |
T Consensus 181 ~~~~~~~~-r~itvST~G--~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~-v 256 (342)
T PRK14465 181 PDAFNLGA-KRITISTSG--VVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRR-I 256 (342)
T ss_pred hhhhcCCC-CeEEEeCCC--chHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCE-E
Confidence 4 34433 478887764 33444444433333479999999999999987 7788999999999854 455554 4
Q ss_pred E--eeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 217 S--LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 217 ~--~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
. .-+|=|+ ..+.++..+..+++..++ .+|.+-+|.+. + ..++.|+++...+ ..+.|.++|+.
T Consensus 257 ~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~~-~---------~~~~~ps~e~i~~----F~~~L~~~Gi~ 320 (342)
T PRK14465 257 TFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNTE-F---------FGWRRPTDDEVAE----FIMLLEPAGVP 320 (342)
T ss_pred EEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCCC-C---------CCCCCCCHHHHHH----HHHHHHHCCCe
Confidence 4 4444454 467889999999988886 56777777662 2 2345677765554 33468888886
Q ss_pred ee
Q 012112 295 HY 296 (471)
Q Consensus 295 ~y 296 (471)
..
T Consensus 321 v~ 322 (342)
T PRK14465 321 IL 322 (342)
T ss_pred EE
Confidence 54
No 143
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.19 E-value=7.7e-05 Score=75.94 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=126.0
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCH
Q 012112 119 FFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGL 198 (471)
Q Consensus 119 ~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~ 198 (471)
--+||.++..+ +++.....++..+.. ++..++.-.--.-...+..+.+.++|++-|++.|+|.++++++.+-|.+.+
T Consensus 84 ~~~~~d~~c~p--~le~~~~r~~~~~~d-~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A 160 (414)
T COG1625 84 QCGNGDTFCYP--DLEPRGRRARLYYKD-DDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNA 160 (414)
T ss_pred ecCCCCcccCc--chhhhhhHHHhhcCC-ccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcH
Confidence 34566655422 567777777776632 223344333112234556666899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeeEeeeecCCCCCC-HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHH
Q 012112 199 KEVYEAIEIVKLCGVENWSLDLISSLPHQT-PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQS 277 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT-~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~ 277 (471)
++..+.++...+.+++ +.+++++ .||-+ -+++.+|++.+.++++.-+.+....+.--|.+.+ .....+..++.
T Consensus 161 ~~~le~L~~f~~~~~~-v~a~iVl-~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~----~~i~~~t~~~l 234 (414)
T COG1625 161 EQLLELLRRFAERCIE-VHAQIVL-CPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR----PGIRPPTPHEL 234 (414)
T ss_pred HHHHHHHHHHHHhhhh-eeeEEEE-cCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC----CCCCCCCHHHH
Confidence 9999999999999887 8888776 79988 9999999999999999988888733332344332 24456777888
Q ss_pred HHHHHHHHHHHHHCC-Cce
Q 012112 278 ANFYRMASSMLSSAG-YRH 295 (471)
Q Consensus 278 ~~~~~~~~~~L~~~G-y~~ 295 (471)
.++.....+..++.| |..
T Consensus 235 ~~~k~i~re~~~E~~~~~V 253 (414)
T COG1625 235 EEFKEIVREFDRELGSIRV 253 (414)
T ss_pred HHHHHHHHHHHHhcCceEE
Confidence 899999999999988 654
No 144
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.18 E-value=0.00015 Score=70.33 Aligned_cols=138 Identities=19% Similarity=0.287 Sum_probs=87.3
Q ss_pred eEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 54 TSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 54 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.++.|...=|+.+|.||+........ .......-..+.+.++++.... ..+..|.|.||.|.+ . ..+
T Consensus 23 ~~~FvR~~gCNlrC~~Cdt~~~~~~~------~~~~~~~~s~~ei~~~i~~~~~-----~~~~~V~lTGGEPll-~-~~l 89 (238)
T TIGR03365 23 KTMFVRTGGCDYRCSWCDSLFTWDGS------AKDTWRPMTAEEVWQELKALGG-----GTPLHVSLSGGNPAL-Q-KPL 89 (238)
T ss_pred eEEEEEeCCcCCcCcCCCCccccCcc------cCCccccCCHHHHHHHHHHHhC-----CCCCeEEEeCCchhh-h-HhH
Confidence 35677777799999999965421110 0001111234556666655432 136789999999976 3 378
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.+|++.+++. +..+++|+|....+ +. ++. ++.+++.+-..+. +.....+...++++.+++ |.
T Consensus 90 ~~li~~l~~~-----g~~v~leTNGtl~~-~~---l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~-~~ 151 (238)
T TIGR03365 90 GELIDLGKAK-----GYRFALETQGSVWQ-DW---FRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDD-GP 151 (238)
T ss_pred HHHHHHHHHC-----CCCEEEECCCCCcH-HH---Hhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh-cC
Confidence 8999988764 34699999975433 32 333 4578887776544 333457777788888887 54
Q ss_pred CeeEeeeecC
Q 012112 214 ENWSLDLISS 223 (471)
Q Consensus 214 ~~v~~DlI~G 223 (471)
. +.+-++++
T Consensus 152 ~-~~vK~Vv~ 160 (238)
T TIGR03365 152 Q-TSLKVVVF 160 (238)
T ss_pred c-eEEEEEEC
Confidence 3 77777777
No 145
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.03 E-value=3.6e-06 Score=72.20 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=42.9
Q ss_pred EEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC-CCHHHHH
Q 012112 56 AYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL-VPPRFVS 134 (471)
Q Consensus 56 lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~-l~~~~l~ 134 (471)
+|++...|+.+|.||........ ........+.+.+.|+..... ......|.|.||.|.+ ++.+.+.
T Consensus 1 ~F~~t~~Cnl~C~~C~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~---~~~~~~v~~~GGEPll~~~~~~l~ 68 (119)
T PF13394_consen 1 VFVRTSGCNLRCSYCYNKSSWSP---------KKGEEMSIEELEEIIDELKEK---GFRPSTVVFTGGEPLLYLNPEDLI 68 (119)
T ss_dssp -----S--S---TTTS-TTTSST----------GGGS--HHHHHHHHHHHHHT---T----EEEEESSSGGGSTTHHHHH
T ss_pred CCCccCCcCCCCccCCcCccCCC---------ccCCcccHhHHHHHHHHHHhc---CCceEEEEEECCCCccccCHHHHH
Confidence 47788889999999996432110 111122233333444322221 1224679999999985 5778888
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDAR 164 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e 164 (471)
++++.+++.. +...+++++|.....+.
T Consensus 69 ~~i~~~~~~~---~~~~i~i~TNg~~~~~~ 95 (119)
T PF13394_consen 69 ELIEYLKERG---PEIKIRIETNGTLPTEE 95 (119)
T ss_dssp HHHCTSTT--------EEEEEE-STTHHHH
T ss_pred HHHHHHHhhC---CCceEEEEeCCeecccc
Confidence 8888887764 34689999985433333
No 146
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.97 E-value=0.00029 Score=71.57 Aligned_cols=206 Identities=16% Similarity=0.220 Sum_probs=124.1
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcC-CCCCCCCHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGG-GTPSLVPPRF 132 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGG-GTps~l~~~~ 132 (471)
+++|-.-= |+..|.||.-... |. ...- ..+.+++++...... ..++.|.|-| |.|.. +.+.
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~~--g~------~RnL----s~~EI~~Qv~~~~~~----~~i~nIVfmGmGEPl~-N~d~ 159 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGRS--GL------LRQL----GSAEIVAQVVLARRR----RAVKKVVFMGMGEPAH-NLDN 159 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCCC--CC------CCCC----CHHHHHHHHHHHHhc----CCCCEEEEeccCcccC-CHHH
Confidence 44444433 9999999965422 11 1111 223444444433321 3477777777 99984 5555
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCC-CEEEEccCCCCHHHHHHcCC---CCCHHHHHHHHHHH
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV-NRVSLGVQAFQDELLKSCGR---AHGLKEVYEAIEIV 208 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv-nrvsiGvQS~~d~~L~~l~R---~~t~~~~~~ai~~~ 208 (471)
+-+.++.+.+.++++ ...+|+.+ -+ ..+.++.|.+.++ ..+.+.+-+.+++..+.+.+ .++.+++.++++..
T Consensus 160 vl~ai~~l~~~~~i~-~r~itiST-~G--~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~ 235 (344)
T PRK14464 160 VLEAIDLLGTEGGIG-HKNLVFST-VG--DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAY 235 (344)
T ss_pred HHHHHHHhhchhcCC-CceEEEec-cc--CchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHH
Confidence 555555554444443 24666632 11 2344555555443 35778899999999998755 55888888888765
Q ss_pred H-HcCCCe-eEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 209 K-LCGVEN-WSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 209 ~-~~G~~~-v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
. ..|..- +..-||=|+ +.+.++..+..+.+..+. -||.+-++.+.+|+.+. .|+++...+ ..+
T Consensus 236 ~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~-~~vNLIPyN~v~g~~~~---------rp~~~~i~~----f~~ 300 (344)
T PRK14464 236 ARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKY-AVMNLIPYNSVDGDAYR---------RPSGERIVA----MAR 300 (344)
T ss_pred HHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhccc-cccceecCCccCCCCcc---------CCCHHHHHH----HHH
Confidence 3 346431 234444455 789999998888887663 47888888888777543 355544433 345
Q ss_pred HHHHCCCcee
Q 012112 287 MLSSAGYRHY 296 (471)
Q Consensus 287 ~L~~~Gy~~y 296 (471)
.|.++|+...
T Consensus 301 ~L~~~gi~~t 310 (344)
T PRK14464 301 YLHRRGVLTK 310 (344)
T ss_pred HHHHCCceEE
Confidence 6788887654
No 147
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=97.97 E-value=5e-05 Score=73.68 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCCCCH-HHHHHHHHHHHHHcCCCC--CcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHH
Q 012112 115 LETVFFGGGTPSLVPP-RFVSSILDTLTDKFGLSL--DAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKS 191 (471)
Q Consensus 115 v~~i~fGGGTps~l~~-~~l~~ll~~l~~~~~l~~--~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~ 191 (471)
++-+|+..|.-- ++ .-.+++++.++. ..+.. .--|.+-+-|+ .+++.++..-.. ++|+||.+|.-.++-|+.
T Consensus 102 IeGLFLSSGvi~--~~DyTmE~mi~var~-LRle~~f~GYIHlK~IPg-as~~li~eagly-adRvSiNIElp~~~~lk~ 176 (404)
T COG4277 102 IEGLFLSSGVIK--NPDYTMEEMIEVARI-LRLEHKFRGYIHLKIIPG-ASPDLIKEAGLY-ADRVSINIELPTDDGLKL 176 (404)
T ss_pred hhhheecccccc--CcchHHHHHHHHHHH-HhhccccCcEEEEEecCC-CCHHHHHHHhhh-hheeEEeEecCCcchhhh
Confidence 566777766531 22 234444443332 12211 22456666675 466655543222 799999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHc---------CCC--------eeEeeeecCCCCCCHHHHHHHHHHHH-hCCCCcEEEEecc
Q 012112 192 CGRAHGLKEVYEAIEIVKLC---------GVE--------NWSLDLISSLPHQTPQMWEESLRRTV-GAQPKHVSVYDLQ 253 (471)
Q Consensus 192 l~R~~t~~~~~~ai~~~~~~---------G~~--------~v~~DlI~GlPgqT~e~~~~~l~~~~-~l~p~his~y~l~ 253 (471)
+.-..+..++.+.+.+++.. -.. .-+..+|+|--|+|.+++....+.+- ..+..+|-+..+.
T Consensus 177 lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~ 256 (404)
T COG4277 177 LAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS 256 (404)
T ss_pred hCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc
Confidence 99888888999988887761 111 13689999999999999998888876 4688899888899
Q ss_pred ccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q 012112 254 VEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISS 300 (471)
Q Consensus 254 ~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 300 (471)
|.|+|++--. ..|+.-...++| +|.-.|.-.||..-||-+
T Consensus 257 Pv~~s~~lp~------~~pplmRehRLY-QADwLlrfYgF~~~Ei~~ 296 (404)
T COG4277 257 PVPSSPLLPD------DKPPLMREHRLY-QADWLLRFYGFSADEILA 296 (404)
T ss_pred ccCCCCCCcc------cCCchhHHHHHH-HHHHHHHHhCCCHHHHHh
Confidence 9999986542 123333344455 456677788888877653
No 148
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00085 Score=67.32 Aligned_cols=201 Identities=16% Similarity=0.136 Sum_probs=132.2
Q ss_pred CeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH
Q 012112 53 PTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF 132 (471)
Q Consensus 53 ~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~ 132 (471)
...|-+=--.|+..|.||--..+.+. .+... --+.+..-++.+++ ...+..|.|.||.|-+++++.
T Consensus 111 drvLll~t~~C~vyCRyCfRr~~~~~-------~~~~~---~~~~~~~al~YIa~----hPeI~eVllSGGDPL~ls~~~ 176 (369)
T COG1509 111 DRVLLLVTGVCAVYCRYCFRRRFVGQ-------DNQGF---NKEEWDKALDYIAA----HPEIREVLLSGGDPLSLSDKK 176 (369)
T ss_pred CeEEEEecCcccceeeeccccccccc-------ccccC---CHHHHHHHHHHHHc----CchhheEEecCCCccccCHHH
Confidence 33444444559999999964433221 11111 11223333444443 245889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEE-----ecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHH
Q 012112 133 VSSILDTLTDKFGLSLDAEISME-----MDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE-----~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~ 207 (471)
|+.|++.|++.-. ..-+.|- +.|..+|++.++.|.+.+ ..+.+-..-=++..+ -.++.+|++.
T Consensus 177 L~~ll~~L~~IpH---v~iiRi~TR~pvv~P~RIt~~L~~~l~~~~-~~v~~~tH~NHp~Ei--------t~e~~~A~~~ 244 (369)
T COG1509 177 LEWLLKRLRAIPH---VKIIRIGTRLPVVLPQRITDELCEILGKSR-KPVWLVTHFNHPNEI--------TPEAREACAK 244 (369)
T ss_pred HHHHHHHHhcCCc---eeEEEeecccceechhhccHHHHHHHhccC-ceEEEEcccCChhhc--------CHHHHHHHHH
Confidence 9999999987532 2234443 378889999999998865 334443322222111 2468899999
Q ss_pred HHHcCCCeeEee-eecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 208 VKLCGVENWSLD-LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 208 ~~~~G~~~v~~D-lI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
++++|+.-.|=. |+=|. +.+.+-+.+.++.+...++.---+|.+-..+|+.=++ .+.++..++++..+.
T Consensus 245 L~~aGv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr---------~~i~~~~~i~~~lr~ 314 (369)
T COG1509 245 LRDAGVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR---------VPIAEGLQIVEELRG 314 (369)
T ss_pred HHHcCceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee---------ccHHHHHHHHHHHHH
Confidence 999999755533 44555 7889999999999999998777777777778875443 245566666766665
Q ss_pred HHH
Q 012112 287 MLS 289 (471)
Q Consensus 287 ~L~ 289 (471)
.++
T Consensus 315 ~~S 317 (369)
T COG1509 315 RTS 317 (369)
T ss_pred hCC
Confidence 543
No 149
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.85 E-value=0.0039 Score=63.68 Aligned_cols=163 Identities=16% Similarity=0.193 Sum_probs=111.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCCcEEEEEecCCCCCHHHHHHHHHCCC-CEEEEccCCCCHHHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDK--FGLSLDAEISMEMDPGTFDARKMEELMDLGV-NRVSLGVQAFQDELLKS 191 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~--~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv-nrvsiGvQS~~d~~L~~ 191 (471)
-.-||.|=|.|- ++-+.+.+.++.|.+. |+++. ..||+.+-- + ...++.|.+-+. -++.+.+-+.++++++.
T Consensus 170 ~NIVfMGMGEPL-~NydnV~~ai~il~d~~g~~is~-R~ITVST~G--i-vp~I~~la~~~~~v~LAiSLHA~~~e~R~~ 244 (371)
T PRK14461 170 TNLVFMGMGEPF-ANYDRWWQAVERLHDPQGFNLGA-RSMTVSTVG--L-VKGIRRLANERLPINLAISLHAPDDALRSE 244 (371)
T ss_pred eeEEEEccCCch-hhHHHHHHHHHHhcCccccCcCC-CceEEEeec--c-hhHHHHHHhcccCceEEEEeCCCCHHHHHH
Confidence 356788999994 3656666666666443 44432 367776532 3 344455555442 47999999999999987
Q ss_pred c---CCCCCHHHHHHHHHHHHHc-CCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCC-----CCcEEEEeccccCCChhh
Q 012112 192 C---GRAHGLKEVYEAIEIVKLC-GVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQ-----PKHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 192 l---~R~~t~~~~~~ai~~~~~~-G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~-----p~his~y~l~~~pgT~l~ 261 (471)
+ +|.+..+++.++++.-.+. |-. .+..-||=|+ ..+.++.++..+.+..++ +-||.+-++.+.+|+++.
T Consensus 245 lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 245 LMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred hcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC
Confidence 5 7889999999998865443 432 1345555565 789999999999888773 468999999998888653
Q ss_pred hcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 262 ILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 262 ~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
.|+.+...+ -.+.|.++|....
T Consensus 324 ---------~ps~~~i~~----F~~~L~~~gi~vt 345 (371)
T PRK14461 324 ---------RSERERVTT----FQRILTDYGIPCT 345 (371)
T ss_pred ---------CCCHHHHHH----HHHHHHHCCceEE
Confidence 255544333 3356888998743
No 150
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.79 E-value=0.0035 Score=59.67 Aligned_cols=186 Identities=19% Similarity=0.264 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCC
Q 012112 94 YIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG 173 (471)
Q Consensus 94 yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~G 173 (471)
.++.|++++......+. ..=.-|-|.||.|++ .++.+.++++.+++. + ....+++|- .++.+.++.+...
T Consensus 20 t~eel~~~~~~~~~f~~--~sggGVt~SGGEPll-q~~fl~~l~~~~k~~-g----i~~~leTnG-~~~~~~~~~l~~~- 89 (213)
T PRK10076 20 TLDALEREVMKDDIFFR--TSGGGVTLSGGEVLM-QAEFATRFLQRLRLW-G----VSCAIETAG-DAPASKLLPLAKL- 89 (213)
T ss_pred CHHHHHHHHHhhhHhhc--CCCCEEEEeCchHHc-CHHHHHHHHHHHHHc-C----CCEEEECCC-CCCHHHHHHHHHh-
Confidence 46777777765433221 011358899999986 678888999988763 3 467888875 5678888887764
Q ss_pred CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 174 VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 174 vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l 252 (471)
++.+.+-+=++|++.-+.+-. .+.+.+.+.++.+.+.|.. .|.+-+|-|+ ..+.+++++..+++.+++++++.+-++
T Consensus 90 ~D~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~~~~~~llpy 167 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLGIKQIHLLPF 167 (213)
T ss_pred cCEEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEecC
Confidence 899999999999998877753 5678999999999999875 1456666555 467899999999999998877766666
Q ss_pred cccCCChh---hhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 253 QVEQGTKF---GILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 253 ~~~pgT~l---~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+.-..++ ...+.-...+.|+.+...+ +.+.+++.|...
T Consensus 168 h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~----~~~~~~~~gl~~ 209 (213)
T PRK10076 168 HQYGEPKYRLLGKTWSMKEVPAPSSADVAT----MREMAERAGFQV 209 (213)
T ss_pred CccchhHHHHcCCcCccCCCCCcCHHHHHH----HHHHHHHcCCeE
Confidence 54322222 1122222334455544333 455677778764
No 151
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.74 E-value=0.0013 Score=68.25 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCH-HHHHHHHHH
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP-QMWEESLRR 238 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~-e~~~~~l~~ 238 (471)
+++++.++...+.++..+.+.|+|.|+++++.|=+.-.+.++.+.++.+.++|++ ++..+++ .||-+. +++.+|++.
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~-~h~qiVl-cPGiNDg~~L~~Ti~d 202 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQ-LHAQVVV-CPGINDGKHLERTLRD 202 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCe-EEEEEEE-cCCcCCHHHHHHHHHH
Confidence 6789999999999999999999999999999887777899999999999999998 8887655 788876 799999999
Q ss_pred HHhC----CCCcEEEEeccccC--CChhhhcccCC--CCCCCCHHHHHHHHHHH
Q 012112 239 TVGA----QPKHVSVYDLQVEQ--GTKFGILYTPG--EFPLPTETQSANFYRMA 284 (471)
Q Consensus 239 ~~~l----~p~his~y~l~~~p--gT~l~~~~~~g--~~~~p~~~~~~~~~~~~ 284 (471)
+.++ -|. +-++.+.| =|.+ +.| .+.+-+.+.+.+....+
T Consensus 203 L~~~~~~~~P~---v~S~avVPVGlTk~----R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 203 LAQFHDGDWPT---VLSVAVVPVGLTRF----RPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHhhcccCCCc---eeEEEEEccccccC----CCCCCCCccCCHHHHHHHHHHH
Confidence 9998 332 22233333 2443 233 23455666666666555
No 152
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.68 E-value=0.0047 Score=62.33 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=120.6
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCC--CCCe-eEEEEcCCCCCCCCHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKT--SPPL-ETVFFGGGTPSLVPPRFVSSILDT 139 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~--~~~v-~~i~fGGGTps~l~~~~l~~ll~~ 139 (471)
|+-.|+||+-... |. .+.-....++.++.......+. ++.+ +-||.|=|.|. ++-+.+...++.
T Consensus 111 C~~~C~FCaTg~~--G~----------~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl-~N~dnV~~a~~i 177 (349)
T COG0820 111 CPVGCTFCATGQG--GL----------NRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPL-LNLDNVVKALEI 177 (349)
T ss_pred cCCCCCeeccccc--cc----------eeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchh-hhHHHHHHHHHh
Confidence 9999999986533 21 1111223344444433222221 2334 56677889996 476667777776
Q ss_pred HHHHcCCCCC-cEEEEEecCCCCCHHHHHHHH-HCCCCEEEEccCCCCHHHHHHc---CCCCCHHHHHHHHHHHHHc-CC
Q 012112 140 LTDKFGLSLD-AEISMEMDPGTFDARKMEELM-DLGVNRVSLGVQAFQDELLKSC---GRAHGLKEVYEAIEIVKLC-GV 213 (471)
Q Consensus 140 l~~~~~l~~~-~eitiE~~P~~l~~e~l~~l~-~~GvnrvsiGvQS~~d~~L~~l---~R~~t~~~~~~ai~~~~~~-G~ 213 (471)
+....++.-. ..+|+.+ ..+.+...+... ..++ .+.|.+.+-+++.++.| ++..+.++..++++.-.+. |.
T Consensus 178 ~~~~~G~~ls~R~iTvST--sGi~~~I~~l~~~~~~v-~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~ 254 (349)
T COG0820 178 INDDEGLGLSKRRITVST--SGIVPRIRKLADEQLGV-ALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR 254 (349)
T ss_pred hcCcccccccceEEEEec--CCCchhHHHHHhhcCCe-EEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc
Confidence 6654443221 4566554 335565555542 3444 69999999999998875 7778899988888875544 43
Q ss_pred CeeEe--eeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 214 ENWSL--DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 214 ~~v~~--DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
.|.. -|+=|.-.+ .+..++.++.+.... -||.+-++.+.||+.+ .. |+.+...+.+ +.|.++
T Consensus 255 -rVt~EY~Ll~~VND~-~e~A~~L~~ll~~~~-~~VNLIP~Np~~~~~y-~r--------~~~~~i~~F~----~~L~~~ 318 (349)
T COG0820 255 -RVTFEYVLLDGVNDS-LEHAKELAKLLKGIP-CKVNLIPYNPVPGSDY-ER--------SSKERIRKFL----KILKKA 318 (349)
T ss_pred -eEEEEeeecccccCC-HHHHHHHHHHhcCCC-ceEEEeecCCCCCCCc-cC--------CcHHHHHHHH----HHHHhC
Confidence 2443 355555333 666666666555543 4999999999999873 22 3444433333 356677
Q ss_pred CCce
Q 012112 292 GYRH 295 (471)
Q Consensus 292 Gy~~ 295 (471)
|+..
T Consensus 319 gv~~ 322 (349)
T COG0820 319 GVLV 322 (349)
T ss_pred CeeE
Confidence 8754
No 153
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=97.55 E-value=0.0011 Score=63.78 Aligned_cols=174 Identities=13% Similarity=0.176 Sum_probs=114.4
Q ss_pred EEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEc----CCCCCCCCHH
Q 012112 56 AYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFG----GGTPSLVPPR 131 (471)
Q Consensus 56 lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fG----GGTps~l~~~ 131 (471)
+-+-=--|...|.||+........ | .+....+.-.+++ ... .++.|.+. ++-|- ....
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~Pp---P--lDp~EPeNTAeAI----asW--------gl~YiVlTSVDRDDlpD-gGa~ 175 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPP---P--LDPNEPENTAEAI----ASW--------GLDYIVLTSVDRDDLPD-GGAN 175 (360)
T ss_pred EEeecCccccCcceeeeecCCCCc---C--CCCCCcccHHHHH----HHc--------CCCeEEEEecccccCcC-cchH
Confidence 444444599999999876543211 1 1222333333333 222 12333321 22232 2457
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEM-DPGTF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++.+-+..|+.. ..++-+|+ .|+-- +-+.++.++..|.+-+.-.||+...=.--.=.|..+..|-..+++.++
T Consensus 176 HiAkTVq~iK~k-----~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK 250 (360)
T KOG2672|consen 176 HIAKTVQKIKEK-----APEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAK 250 (360)
T ss_pred HHHHHHHHHHhh-----CcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHH
Confidence 888888888764 34788898 56532 678999999999998888888853322222245668899999999999
Q ss_pred HcCCCe-eEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 210 LCGVEN-WSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 210 ~~G~~~-v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
+.--.- ....+|.|+ |+|.|++.++++.+.+.++|-+.+-.++
T Consensus 251 ~~~P~litktsiMlgl-getdeei~~tl~dLr~~~vdv~t~gqym 294 (360)
T KOG2672|consen 251 EVKPGLITKTSIMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYM 294 (360)
T ss_pred hhCCCceehhhhhhcc-CCCHHHHHHHHHHHHHcCCcEEeccccc
Confidence 883221 346678887 9999999999999999999977766655
No 154
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=97.34 E-value=0.00071 Score=59.35 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=50.9
Q ss_pred CCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCC-CCH
Q 012112 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSL-VPP 130 (471)
Q Consensus 52 ~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~-l~~ 130 (471)
++..+-+...-|+.+|.||......... .........++.+++++.. ..+..|.|.||.|.+ -..
T Consensus 4 ~g~~~~~~t~~Cnl~C~yC~~~~~~~~~------~~~~~~~~~~~~ii~~~~~--------~~~~~i~l~GGEPll~~~~ 69 (139)
T PF13353_consen 4 EGIRVVLFTNGCNLRCKYCFNSEIWKFK------RGKELSEEIIEEIIEELKN--------YGIKGIVLTGGEPLLHENY 69 (139)
T ss_dssp SSCEEEEEEC--SB--TT-TTCCCS-TT-------SEEC-HHHHHHHCHHHCC--------CCCCEEEEECSTGGGHHSH
T ss_pred CCEEEEEEcCcccccCcCcCCcccCccc------ccccccchhhhhhhhHHhc--------CCceEEEEcCCCeeeeccH
Confidence 4444444466799999999654332110 1112223344444444431 236788888999974 156
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPGTFDAR 164 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e 164 (471)
+.+.++++.+++.+. ..+.+..|...++..
T Consensus 70 ~~l~~i~~~~k~~~~----~~~~~~tng~~~~~~ 99 (139)
T PF13353_consen 70 DELLEILKYIKEKFP----KKIIILTNGYTLDEL 99 (139)
T ss_dssp HHHHHHHHHHHHTT-----SEEEEEETT--HHHH
T ss_pred hHHHHHHHHHHHhCC----CCeEEEECCCchhHH
Confidence 889999999998754 356777777655443
No 155
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.02 E-value=0.016 Score=56.54 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=96.2
Q ss_pred eeEEEEcCCCCCCCCH--HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPP--RFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~--~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.|-+|++.+.-..| +...++++.+++.. ++..+.+-++.. .+.++.++++|+.+|.+.+-+-+-.....+
T Consensus 33 V~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~---~~~~~~~l~~~~---~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~ 106 (265)
T cd03174 33 VDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV---PNVKLQALVRNR---EKGIERALEAGVDEVRIFDSASETHSRKNL 106 (265)
T ss_pred CCEEEeccCcCccccccCCCHHHHHHHHHhcc---CCcEEEEEccCc---hhhHHHHHhCCcCEEEEEEecCHHHHHHHh
Confidence 7888999988751100 23455666666543 245666555443 888999999999999998866554455556
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 193 GRAH--GLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 193 ~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+|.. ..+.+.++++.+++.|+. +.+.++.-. |..+.+.+.+.++.+.+++++.|.+-.
T Consensus 107 ~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 107 NKSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech
Confidence 6654 788899999999999997 899886555 248999999999999999999887543
No 156
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=96.99 E-value=0.0049 Score=55.57 Aligned_cols=81 Identities=11% Similarity=0.155 Sum_probs=52.6
Q ss_pred CCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCC-C
Q 012112 51 LSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLV-P 129 (471)
Q Consensus 51 ~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l-~ 129 (471)
+....+| +.-|+.+|.||..+...... .........++.+++++.... .+..|.|.||.|.+- +
T Consensus 15 G~r~~if--~~gCnl~C~~C~n~~~~~~~------~g~~~~~~~~~~i~~~l~~~~-------~~~gVt~sGGEPllq~~ 79 (154)
T TIGR02491 15 GIRVSLF--VAGCKHHCEGCFNKETWNFN------GGKEFTEALEKEIIRDLNDNP-------LIDGLTLSGGDPLYPRN 79 (154)
T ss_pred CcEEEEE--ECCCCCCCcCCCcccccCCC------CCCcCCHHHHHHHHHHHHhcC-------CcCeEEEeChhhCCCCC
Confidence 3344444 56799999999876542110 112233455777777775432 146788999999753 3
Q ss_pred HHHHHHHHHHHHHHcCC
Q 012112 130 PRFVSSILDTLTDKFGL 146 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l 146 (471)
.+.+.++++.+++.++.
T Consensus 80 ~~~l~~ll~~~k~~~~~ 96 (154)
T TIGR02491 80 VEELIELVKKIKAEFPE 96 (154)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 48899999999887553
No 157
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.86 E-value=0.0096 Score=53.27 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=64.3
Q ss_pred eEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 54 TSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 54 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
+++=|.+.-|+.+|.||+.+...... ... .--.+.+.++|+.... .+..|.|.||. +..+.+
T Consensus 16 ~~~~vfl~GCnlrC~~C~n~~~~~~~------~g~---~lt~eel~~~I~~~~~------~~~gVt~SGGE---l~~~~l 77 (147)
T TIGR02826 16 YSLAFYITGCPLGCKGCHSPESWHLS------EGT---KLTPEYLTKTLDKYRS------LISCVLFLGGE---WNREAL 77 (147)
T ss_pred EEEEEEeCCCCCCCCCCCChHHcCCC------CCc---CCCHHHHHHHHHHhCC------CCCEEEEechh---cCHHHH
Confidence 45556666799999999987542110 001 1234566666665432 14578899999 577789
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
.++++.+++. + ..+.++++ ..-++..+.+.+. ++-+.+|.
T Consensus 78 ~~ll~~lk~~-G----l~i~l~Tg--~~~~~~~~~il~~-iD~l~~g~ 117 (147)
T TIGR02826 78 LSLLKIFKEK-G----LKTCLYTG--LEPKDIPLELVQH-LDYLKTGR 117 (147)
T ss_pred HHHHHHHHHC-C----CCEEEECC--CCCHHHHHHHHHh-CCEEEECh
Confidence 9999999875 3 35788876 2333344444332 67788876
No 158
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.004 Score=59.24 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=58.6
Q ss_pred CCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHH
Q 012112 52 SPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPR 131 (471)
Q Consensus 52 ~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~ 131 (471)
...+++|..--|+.+|.||+-....... .........++.|+++++.... ....|-|.||.| +-..
T Consensus 21 Gr~~vFVR~~GC~l~C~~Cdt~~t~~~~------~~~~~~~~~~~~I~~~i~~~~~------~~~~V~lTGGEP--~~~~ 86 (212)
T COG0602 21 GRPSVFVRFAGCNLRCPGCDTKYTWDFN------YGKPGTPMSADEILADIKSLGY------KARGVSLTGGEP--LLQP 86 (212)
T ss_pred cceeEEEEcCCCCCCCCCCCChhhhccc------ccCCCCccCHHHHHHHHHhcCC------CcceEEEeCCcC--CCcc
Confidence 4457888888899999999965322110 0112334457788888876522 234788999999 3445
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecC
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEMDP 158 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~~P 158 (471)
.+..|++.+++. +.++.+|+|-
T Consensus 87 ~l~~Ll~~l~~~-----g~~~~lETng 108 (212)
T COG0602 87 NLLELLELLKRL-----GFRIALETNG 108 (212)
T ss_pred cHHHHHHHHHhC-----CceEEecCCC
Confidence 688899988864 3467788753
No 159
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=96.67 E-value=0.0094 Score=53.75 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=45.5
Q ss_pred eEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCH--H
Q 012112 54 TSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPP--R 131 (471)
Q Consensus 54 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~--~ 131 (471)
...-|++--|+.+|.||.-+...... .+.......++.+++++.... .....|.|.||.|. +.. +
T Consensus 17 ~r~~if~~GCnl~C~~C~n~~~~~~~------~g~~~~~~~~~~il~~~~~~~------~~~~gvt~sGGEPl-~~~~~~ 83 (154)
T PRK11121 17 TRCTLFVSGCVHQCPGCYNKSTWRLN------SGHPFTKEMEDQIIADLNDTR------IKRQGLSLSGGDPL-HPQNVP 83 (154)
T ss_pred cEEEEEcCCCCCcCcCCCChhhccCC------CCcccCHHHHHHHHHHHHHhC------CCCCcEEEECCCcc-chhhHH
Confidence 34455557899999999876532110 011112334666666665331 11355778899994 333 6
Q ss_pred HHHHHHHHHHHHc
Q 012112 132 FVSSILDTLTDKF 144 (471)
Q Consensus 132 ~l~~ll~~l~~~~ 144 (471)
.+.+++..+++.+
T Consensus 84 ~l~~l~~~~k~~~ 96 (154)
T PRK11121 84 DILKLVQRVKAEC 96 (154)
T ss_pred HHHHHHHHHHHHC
Confidence 6667777777654
No 160
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.51 E-value=0.055 Score=48.99 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=80.5
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHH
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKS 191 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~ 191 (471)
..+.+-+.|+.|.+ .++++.++++.+- +..+-+|+|--.+ ++...+.|...----|-+.+--.|++...+
T Consensus 91 g~d~vRiSG~EP~l-~~EHvlevIeLl~-------~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~k 162 (228)
T COG5014 91 GCDLVRISGAEPIL-GREHVLEVIELLV-------NNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEK 162 (228)
T ss_pred CCcEEEeeCCCccc-cHHHHHHHHHhcc-------CceEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHH
Confidence 36778899999975 7788888887763 3478899987655 889888887633224566678889998887
Q ss_pred cCC-CC-CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHH
Q 012112 192 CGR-AH-GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV 240 (471)
Q Consensus 192 l~R-~~-t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~ 240 (471)
+.- .. -..--.+|++.+.+.|+. +..-.++++- .|+..+.|...+
T Consensus 163 IT~asp~~F~~QL~aLr~L~~~g~r-f~pA~~~~f~---~Ed~~k~Lak~L 209 (228)
T COG5014 163 ITGASPEYFRYQLKALRHLHGKGHR-FWPAVVYDFF---REDGLKELAKRL 209 (228)
T ss_pred HhcCChHHHHHHHHHHHHHHhcCce-eeehhhhccc---hhhhHHHHHHHh
Confidence 752 22 245567788888888986 7777888773 344444444433
No 161
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=96.18 E-value=0.0044 Score=59.55 Aligned_cols=137 Identities=16% Similarity=0.263 Sum_probs=97.7
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
.++.+-+-||.|++. .++..+...+.+.-++ .++.|+.|- .+....+-.+.++|...+.+.+.+...+-...+-
T Consensus 59 gv~knrLtggeptIr--~di~~i~~g~~~l~gL---ks~~ITtng-~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~ 132 (323)
T KOG2876|consen 59 GVDKNRLTGGEPLIR--QDIVPIVAGLSSLPGL---KSIGITTNG-LVLARLLPQLHKAGLSSINISLDTLVRAKFAKLT 132 (323)
T ss_pred hhhhhhhcCCCCccc--ccccchhhhhhcccch---hhhceeccc-hhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHh
Confidence 367777889999885 4566666555543333 355666653 4677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCe--eEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChh
Q 012112 194 RAHGLKEVYEAIEIVKLCGVEN--WSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKF 260 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~--v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l 260 (471)
|..+...+...++.+.+.|..+ +|+-.|=|+-|.-.= ++-.+-+.+|-.|-+-.+++.-|-.+
T Consensus 133 rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~ev~----Dfv~~tr~~p~DVrfIe~mpf~gn~~ 197 (323)
T KOG2876|consen 133 RRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDEVF----DFVLLTRMRPLDVRFIEFMPFDGNKW 197 (323)
T ss_pred hhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCccc----ceeeecCCCCcceEEEEecccCCCcc
Confidence 9999999999999999988765 566666666443221 12222344555577777777666543
No 162
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=95.93 E-value=0.25 Score=47.47 Aligned_cols=114 Identities=23% Similarity=0.280 Sum_probs=83.3
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC----------CCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT----------FDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~----------l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
++.+-||+||.++.+.+.+++.++..+++ + +.+.|+. .=++.++..++.|++.|.|.-=|.
T Consensus 25 ID~lKfg~Gt~~l~~~~~l~eki~la~~~-~--------V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~ 95 (237)
T TIGR03849 25 ITFVKFGWGTSALIDRDIVKEKIEMYKDY-G--------IKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM 95 (237)
T ss_pred eeeEEecCceEeeccHHHHHHHHHHHHHc-C--------CeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc
Confidence 78899999999999989999999888753 2 2233332 224677799999999987765554
Q ss_pred CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--C----CCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 185 QDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--P----HQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 185 ~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--P----gqT~e~~~~~l~~~~~l~p~his~y 250 (471)
+ .+.++..+.|+.+++.||. +-.. +|. | -.+.++|.+.++..++.|.++|-+=
T Consensus 96 ~----------i~~~~~~rlI~~~~~~g~~-v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiE 154 (237)
T TIGR03849 96 E----------ISLEERCNLIERAKDNGFM-VLSE--VGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIE 154 (237)
T ss_pred C----------CCHHHHHHHHHHHHhCCCe-Eecc--ccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 2 4567778899999999886 3322 232 2 1467888888888899999877543
No 163
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=95.77 E-value=0.82 Score=45.00 Aligned_cols=209 Identities=17% Similarity=0.089 Sum_probs=118.8
Q ss_pred EEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 55 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
|-=|....|..+|-||...-+..-. .+.....+++..+..+.+... .+.|-|-||.|+- ....+.
T Consensus 120 SgTVFFsgCnfrCVfCQNwdISq~~------~g~~v~~e~La~i~~~~~~~G--------akNvN~Vgg~Ptp-~lp~Il 184 (335)
T COG1313 120 SGTVFFSGCNFRCVFCQNWDISQFG------IGKEVTPEDLAEIILELRRHG--------AKNVNFVGGDPTP-HLPFIL 184 (335)
T ss_pred CceEEecCcceEEEEecCccccccC------CCeEecHHHHHHHHHHHHHhc--------CcceeecCCCCCC-chHHHH
Confidence 4456667799999999765443111 123344566777777765432 4556677888875 223344
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEc-cCCCCHHHHHHcCCCC-CHHHHHHHHHHHHHc-
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLG-VQAFQDELLKSCGRAH-GLKEVYEAIEIVKLC- 211 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiG-vQS~~d~~L~~l~R~~-t~~~~~~ai~~~~~~- 211 (471)
+.+..+... ..+--.+| ...|.|.++.|. |+--|-+| +-=+||+--.+..+.- =.+-+.+++..+.+.
T Consensus 185 e~l~~~~~~------iPvvwNSn-mY~s~E~l~lL~--gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~ 255 (335)
T COG1313 185 EALRYASEN------IPVVWNSN-MYMSEETLKLLD--GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQV 255 (335)
T ss_pred HHHHHHhcC------CCEEEecC-CccCHHHHHHhh--ccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 444433332 22332333 357999999884 55556665 4445777666665544 456677788777666
Q ss_pred C-CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccC-CCCCCCCHHHHHHHHHHHHHHHH
Q 012112 212 G-VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTP-GEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 212 G-~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~-g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
| +- |. .| -+||.-..=...-++++.+.-++++-+.-.- .-.|-++..+- +--..++. +-|+.|.+..+
T Consensus 256 g~~i-iR-HL--VlPghlecCTkpI~~wiae~~g~~~~vNiM~--QY~P~ykA~eypeI~R~lt~----eE~e~a~~~a~ 325 (335)
T COG1313 256 GGLI-IR-HL--VLPGHLECCTKPILRWIAENLGNDVRVNIMF--QYRPEYKAEEYPEINRRLTR----EEYEKALEYAE 325 (335)
T ss_pred CceE-EE-EE--ecCCchhhccHHHHHHHHHhCCCCeeEEehh--hccchhhhhhchhhcccCCH----HHHHHHHHHHH
Confidence 3 32 22 22 3688755547788999998877776655422 11232322111 11112333 44666777777
Q ss_pred HCCCceec
Q 012112 290 SAGYRHYE 297 (471)
Q Consensus 290 ~~Gy~~ye 297 (471)
+.|+....
T Consensus 326 ~~gl~~~~ 333 (335)
T COG1313 326 KLGLTNIL 333 (335)
T ss_pred HcCCceee
Confidence 88887543
No 164
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.76 E-value=0.27 Score=48.38 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
+.+.++++....+ .+..+.+-+++...+.+.++...+.|+..|.+.+ +....+.+.++++.+
T Consensus 57 ~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~------------~~~~~~~~~~~i~~a 118 (266)
T cd07944 57 DDEFLRRLLGDSK------GNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF------------HKHEFDEALPLIKAI 118 (266)
T ss_pred CHHHHHHHHhhhc------cCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec------------ccccHHHHHHHHHHH
Confidence 3455555544331 2468888899988888999999999999877765 224688999999999
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
++.|+. |.+.++... +-+.+.+.+.++.+.+.+++.|++-
T Consensus 119 k~~G~~-v~~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 119 KEKGYE-VFFNLMAIS-GYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred HHCCCe-EEEEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 999997 888888765 5789999999999999999987654
No 165
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=95.31 E-value=0.3 Score=50.72 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=83.8
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHH
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKS 191 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~ 191 (471)
+...|-|.||.||+ .++|-+|+...++. + -..+.+.+|--.+ +.+..+.|+++|+|.|-+.....+++....
T Consensus 110 ~~~aIq~tGGEPTv--r~DL~eiv~~a~e~-g---~~hVqinTnGirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~ 183 (475)
T COG1964 110 GANAVQFTGGEPTL--RDDLIEIIKIAREE-G---YDHVQLNTNGIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWK 183 (475)
T ss_pred CCceeEecCCCccc--hhhHHHHHHHHhhc-C---ccEEEEccCceeeccCHHHHHHHHhcCCcEEEEecCCCCCCchhh
Confidence 35678899999997 56788888888764 2 2356666665544 689999999999999999999888888665
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC-CCCHHHHHHHHHHHHh
Q 012112 192 CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP-HQTPQMWEESLRRTVG 241 (471)
Q Consensus 192 l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP-gqT~e~~~~~l~~~~~ 241 (471)
. .-++..+++.++++|..+ +-|+-++- |-+..++-.-++++..
T Consensus 184 ~-----~~eIk~alen~r~~g~~s--vVLVptl~rgvNd~~lG~iirfa~~ 227 (475)
T COG1964 184 N-----HWEIKQALENCRKAGLPS--VVLVPTLIRGVNDHELGAIIRFALN 227 (475)
T ss_pred H-----hhhhHHHHHHHHhcCCCc--EEEEeehhcccChHHHHHHHHHHHh
Confidence 5 455666999999999874 34444442 3455566666677664
No 166
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=94.85 E-value=0.47 Score=44.76 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=83.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKF-GLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~-~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
|+.|-||+||.++++.+++++-++..++.- ...++--.+.-+....--++.++..++.|++.|.|.==+.
T Consensus 44 VDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i--------- 114 (258)
T COG1809 44 VDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTI--------- 114 (258)
T ss_pred eeeeeecccccccccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEecCCee---------
Confidence 788999999999999999999999887631 1111111111122233347999999999999988754332
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC----CCCHHHHHHHHHHHHhCCCCc
Q 012112 194 RAHGLKEVYEAIEIVKLCGVENWSLDLISSLP----HQTPQMWEESLRRTVGAQPKH 246 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP----gqT~e~~~~~l~~~~~l~p~h 246 (471)
..+.++-.+.|+.+.+.||. |-..+=--.| -++.+++.+.+...++.+.+.
T Consensus 115 -~m~~eek~~lIe~a~d~Gf~-vlsEvGkk~~e~~~~l~~~d~~k~i~~dvdaGa~~ 169 (258)
T COG1809 115 -PMSTEEKCRLIERAVDEGFM-VLSEVGKKDPESDSALSPDDRVKLINDDVDAGAEY 169 (258)
T ss_pred -ecchHHHHHHHHHHHhcccE-EehhhcccCcchhhhcChHHHHHHHHHHHHcchHH
Confidence 34677788899999999997 3332211122 257888999998888887663
No 167
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.64 E-value=2.5 Score=43.08 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=70.7
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 149 DAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 149 ~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
+..++.-+.|+.-+.+.++...+.|++.|-+..- .+ ..+.+.+.++.+|+.|+. +.+.++.. +.-+
T Consensus 77 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~~-----------e~~~~~~~i~~ak~~G~~-v~~~l~~a-~~~~ 142 (337)
T PRK08195 77 QAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATH-CT-----------EADVSEQHIGLARELGMD-TVGFLMMS-HMAP 142 (337)
T ss_pred CCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEe-cc-----------hHHHHHHHHHHHHHCCCe-EEEEEEec-cCCC
Confidence 4677877788877888999999999998877651 11 234678999999999997 88888877 5778
Q ss_pred HHHHHHHHHHHHhCCCCcEEE
Q 012112 229 PQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~ 249 (471)
++.+.+.++.+.+.+++.|.+
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEe
Confidence 999999999999999987644
No 168
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.58 E-value=0.9 Score=46.28 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=71.1
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 149 DAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 149 ~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
...+++-+.|+.-+.+.++...++|++.|-+..- ....+.+.+.++.+|+.|+. +.+.+|... .-|
T Consensus 76 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~------------~~e~d~~~~~i~~ak~~G~~-v~~~l~~s~-~~~ 141 (333)
T TIGR03217 76 RAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATH------------CTEADVSEQHIGMARELGMD-TVGFLMMSH-MTP 141 (333)
T ss_pred CCEEEEEeccCccCHHHHHHHHHCCCCEEEEEec------------cchHHHHHHHHHHHHHcCCe-EEEEEEccc-CCC
Confidence 4678888889877889999999999998887762 12234678999999999997 888888774 678
Q ss_pred HHHHHHHHHHHHhCCCCcEEE
Q 012112 229 PQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~ 249 (471)
++.+.+.++.+.+.+++.|.+
T Consensus 142 ~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 142 PEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999987644
No 169
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.80 E-value=0.94 Score=46.34 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=67.8
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHH-HcCCCC--CHHHHHHHHHHHHHcCCCeeEeee--ecCCCCC---CHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLK-SCGRAH--GLKEVYEAIEIVKLCGVENWSLDL--ISSLPHQ---TPQMWE 233 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~-~l~R~~--t~~~~~~ai~~~~~~G~~~v~~Dl--I~GlPgq---T~e~~~ 233 (471)
+.+-++...++|+..|.+.+ |.+|..++ .+++.. ..+.+.++++.+++.|+. |.+.+ .+|.|.. +++.+.
T Consensus 123 n~~die~A~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~-v~~~is~~fg~p~~~r~~~~~l~ 200 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKHSIP-VRGYVSCVVGCPIEGPVPPSKVA 200 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeeecCCccCCCCHHHHH
Confidence 77888888999999999999 66666554 456543 455666899999999987 76555 6888877 467788
Q ss_pred HHHHHHHhCCCCcEEEEe
Q 012112 234 ESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 234 ~~l~~~~~l~p~his~y~ 251 (471)
+.++.+.+.+++.|++-.
T Consensus 201 ~~~~~~~~~Gad~I~l~D 218 (347)
T PLN02746 201 YVAKELYDMGCYEISLGD 218 (347)
T ss_pred HHHHHHHHcCCCEEEecC
Confidence 888888999999876543
No 170
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.30 E-value=0.74 Score=44.18 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=87.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHH-HHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK-MEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~-l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
++.|=+| .| ..+++..+.+-...+.... .++..-+++...+-+. ++.+++.|++.+.+-+-.-+......++
T Consensus 28 v~~iEvg--~~-~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~ 100 (237)
T PF00682_consen 28 VDYIEVG--FP-FASEDDFEQVRRLREALPN----ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLN 100 (237)
T ss_dssp TSEEEEE--HC-TSSHHHHHHHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTC
T ss_pred CCEEEEc--cc-ccCHHHHHHhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhc
Confidence 5666676 33 2466555554333332211 4677667765444444 6667789999999977665556666777
Q ss_pred CCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 194 RAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 194 R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+.. ..+.+.++++.+++.|+. +.+.++... .-+++.+.+..+.+.+++++.|.+-.
T Consensus 101 ~~~~~~~~~~~~~v~~ak~~g~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 101 KSREEALERIEEAVKYAKELGYE-VAFGCEDAS-RTDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSE-EEEEETTTG-GSSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCc-eEeCccccc-cccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 643 467788889999999997 777766553 56789999999999999999886553
No 171
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=93.20 E-value=1.5 Score=42.89 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=83.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+| -|.. .+... +.++.+.+. .....+..-+++ +.+.++...++|++.|.+.+=.-+....+.+++
T Consensus 34 v~~iE~g--~p~~-~~~~~-e~~~~l~~~---~~~~~~~~~~r~---~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~ 103 (259)
T cd07939 34 VDEIEVG--IPAM-GEEER-EAIRAIVAL---GLPARLIVWCRA---VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGK 103 (259)
T ss_pred CCEEEEe--cCCC-CHHHH-HHHHHHHhc---CCCCEEEEeccC---CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCC
Confidence 5666665 5654 44332 344555442 123455544443 577788888999999998884434445567776
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. ..+.+.++++.+++.|+. |.+.++..- .-+++.+.+.++.+.+.+++.|++-
T Consensus 104 ~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 104 DRAWVLDQLRRLVGRAKDRGLF-VSVGAEDAS-RADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred CHHHHHHHHHHHHHHHHHCCCe-EEEeeccCC-CCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 43 446677899999999996 777766553 3568999999999999999876543
No 172
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=93.09 E-value=2 Score=44.23 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+| .|.. +++..+ .++.+.+. ....++..-+++ ..+.++...++|+..|.+-+=+-+-...+.+++
T Consensus 36 v~~IEvG--~p~~-~~~~~e-~i~~i~~~---~~~~~v~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~ 105 (363)
T TIGR02090 36 VDVIEAG--FPIA-SEGEFE-AIKKISQE---GLNAEICSLARA---LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKK 105 (363)
T ss_pred CCEEEEe--CCCC-ChHHHH-HHHHHHhc---CCCcEEEEEccc---CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCC
Confidence 5555553 6654 555543 34444332 334677766654 577789999999999888775555555566776
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.. ..+.+.++++.+++.|+. |.+.+.-+ ..-+.+.+.+.++.+.+.+++.|.+-.
T Consensus 106 ~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda-~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 106 SRDEVLEKAVEAVEYAKEHGLI-VEFSAEDA-TRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred CHHHHHHHHHHHHHHHHHcCCE-EEEEEeec-CCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 53 567788899999999997 88877655 356789999999999999999876654
No 173
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=92.95 E-value=3 Score=41.41 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=67.5
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeec-CCC-CCCHHHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLIS-SLP-HQTPQMWEESLRR 238 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~-GlP-gqT~e~~~~~l~~ 238 (471)
..-++...++|++.|.+.+=+-+....+.+++.. ..+++.++++.+++.|+. |.+.+.- |-| .-+++.+.+.++.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 4568888899999999999665566667777653 566788889999999986 8877773 333 4468889999999
Q ss_pred HHhCCCCcEEEE
Q 012112 239 TVGAQPKHVSVY 250 (471)
Q Consensus 239 ~~~l~p~his~y 250 (471)
+.+++++.|++-
T Consensus 156 ~~~~G~~~i~l~ 167 (280)
T cd07945 156 LSDLPIKRIMLP 167 (280)
T ss_pred HHHcCCCEEEec
Confidence 999999987654
No 174
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.91 E-value=2.1 Score=42.10 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=80.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+|. |.. .+.. .+.++.+.+. .. ...+..-+++ +.+-++...++|++.|.+-+=.-+....+.+++
T Consensus 36 v~~IEvG~--P~~-~~~~-~~~~~~l~~~-~~--~~~v~~~~r~---~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~ 105 (262)
T cd07948 36 VDYIELTS--PAA-SPQS-RADCEAIAKL-GL--KAKILTHIRC---HMDDARIAVETGVDGVDLVFGTSPFLREASHGK 105 (262)
T ss_pred CCEEEEEC--CCC-CHHH-HHHHHHHHhC-CC--CCcEEEEecC---CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCC
Confidence 67777763 654 4433 3334444332 22 2445444444 577788889999999888774433334445555
Q ss_pred C--CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 195 A--HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 195 ~--~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
. ...+.+.++++.+++.|+. |.+.++-.+ +-+++.+.+.++.+.+++++.|++
T Consensus 106 ~~~e~~~~~~~~i~~a~~~G~~-v~~~~eda~-r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 106 SITEIIESAVEVIEFVKSKGIE-VRFSSEDSF-RSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred CHHHHHHHHHHHHHHHHHCCCe-EEEEEEeeC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4 3456678888999999987 888875433 234788888889999999987654
No 175
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=92.74 E-value=2.5 Score=41.50 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=83.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCC----CCEEEEccCCCCHH-HH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG----VNRVSLGVQAFQDE-LL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~G----vnrvsiGvQS~~d~-~L 189 (471)
++.|=+| .|. .+++.. +.++.+.+.. ++.++..-+++. .+.++...++| ++.|.+-+ |.+|. ..
T Consensus 34 v~~iEvg--~~~-~~~~~~-~~~~~l~~~~---~~~~~~~l~r~~---~~~v~~a~~~~~~~~~~~i~i~~-~~s~~~~~ 102 (268)
T cd07940 34 VDVIEAG--FPA-ASPGDF-EAVKRIAREV---LNAEICGLARAV---KKDIDAAAEALKPAKVDRIHTFI-ATSDIHLK 102 (268)
T ss_pred CCEEEEe--CCC-CCHHHH-HHHHHHHHhC---CCCEEEEEccCC---HhhHHHHHHhCCCCCCCEEEEEe-cCCHHHHH
Confidence 5666665 344 255554 4456665542 356777776653 55566667777 99888877 45554 45
Q ss_pred HHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 190 KSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 190 ~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
+.+++.. ..+.+.++++.+++.|+. |.+..+.+- .-+++.+.+.++.+.+++++.|++-
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~ 163 (268)
T cd07940 103 YKLKKTREEVLERAVEAVEYAKSHGLD-VEFSAEDAT-RTDLDFLIEVVEAAIEAGATTINIP 163 (268)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEeeecCC-CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5677653 457788899999999986 776665543 3578889999999999999877543
No 176
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.70 E-value=2.1 Score=42.31 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=74.1
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCeeEeeee--cCC
Q 012112 149 DAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA--HGLKEVYEAIEIVKLCGVENWSLDLI--SSL 224 (471)
Q Consensus 149 ~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~--~t~~~~~~ai~~~~~~G~~~v~~DlI--~Gl 224 (471)
+.+++.-+ + +.+-++...++|+..|.+.+-+-+-...+.+++. ...+.+.++++.+++.|.. +.+.++ +|.
T Consensus 66 ~~~~~~~~-~---~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~-v~~~i~~~f~~ 140 (274)
T cd07938 66 GVRYSALV-P---NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLR-VRGYVSTAFGC 140 (274)
T ss_pred CCEEEEEC-C---CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeEecC
Confidence 45665554 3 5667888889999999998888777777788876 3567788899999999987 666655 555
Q ss_pred CCC---CHHHHHHHHHHHHhCCCCcEEEE
Q 012112 225 PHQ---TPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 225 Pgq---T~e~~~~~l~~~~~l~p~his~y 250 (471)
|.+ +.+.+.+.++.+.+++++.|.+-
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (274)
T cd07938 141 PYEGEVPPERVAEVAERLLDLGCDEISLG 169 (274)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 655 67778888888999999876543
No 177
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=92.25 E-value=1.6 Score=43.14 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=65.6
Q ss_pred EEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCCCCHHHH
Q 012112 154 MEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPHQTPQMW 232 (471)
Q Consensus 154 iE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPgqT~e~~ 232 (471)
++..|.++.++.++...++|+..|.+.+-.- + .+.+.++++.+++.|+. +...+++ .-+.-+++.+
T Consensus 85 ~~~~p~~~~~~di~~~~~~g~~~iri~~~~~-~-----------~~~~~~~i~~ak~~G~~-v~~~i~~~~~~~~~~~~~ 151 (275)
T cd07937 85 YRHYPDDVVELFVEKAAKNGIDIFRIFDALN-D-----------VRNLEVAIKAVKKAGKH-VEGAICYTGSPVHTLEYY 151 (275)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEEEeecCC-h-----------HHHHHHHHHHHHHCCCe-EEEEEEecCCCCCCHHHH
Confidence 3345667789999999999999888866432 2 57899999999999986 6655543 2267789999
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 012112 233 EESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y 250 (471)
.+.++.+.+.+++.|++-
T Consensus 152 ~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 152 VKLAKELEDMGADSICIK 169 (275)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999987654
No 178
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=92.07 E-value=0.79 Score=38.98 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=54.4
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+..|.+-. .+...+++|+++|||+...+. .+.|.-.+.|| ++
T Consensus 32 ~iL~~l~~~~~~t~~ela~~~~~~~~-tvs~~l~~Le~~GlI~r~~~~------------------~D~R~~~v~LT-~~ 91 (118)
T TIGR02337 32 RILRILAEQGSMEFTQLANQACILRP-SLTGILARLERDGLVTRLKAS------------------NDQRRVYISLT-PK 91 (118)
T ss_pred HHHHHHHHcCCcCHHHHHHHhCCCch-hHHHHHHHHHHCCCEEeccCC------------------CCCCeeEEEEC-Hh
Confidence 45566666788999999999998865 567899999999999875321 12344579997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 92 G~~~~~~~~~~ 102 (118)
T TIGR02337 92 GQALYASLSPQ 102 (118)
T ss_pred HHHHHHHhhHH
Confidence 99998877543
No 179
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=92.06 E-value=0.59 Score=35.30 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=40.7
Q ss_pred HHHHhcc-ccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 374 VLMLSFR-TARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 374 ~~~~~Lr-~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
.++..+. ...++...++.+.++.+.. .+...++.|++.|||+...+. ...|.-+++|| +
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~~~~-~vs~~i~~L~~~glv~~~~~~------------------~d~R~~~~~LT-~ 66 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGISKS-TVSRIIKKLEEKGLVEKERDP------------------HDKRSKRYRLT-P 66 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT--HH-HHHHHHHHHHHTTSEEEEEES------------------SCTTSEEEEE--H
T ss_pred HHHHHHHccCCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEecCCC------------------CcCCeeEEEeC-C
Confidence 3444555 5667889999999998865 456899999999999765321 13455579997 8
Q ss_pred hh
Q 012112 453 EG 454 (471)
Q Consensus 453 ~G 454 (471)
+|
T Consensus 67 ~G 68 (68)
T PF13463_consen 67 AG 68 (68)
T ss_dssp HH
T ss_pred CC
Confidence 87
No 180
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.67 E-value=5.1 Score=41.30 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=84.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+| .|+. ++... +.++.+.+.. ...+++.-+++ +.+.++...++|+..|.+-+=+-+-...+.+++
T Consensus 37 v~~IEvG--~p~~-~~~~~-e~i~~i~~~~---~~~~i~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~ 106 (365)
T TIGR02660 37 VDELEVG--IPAM-GEEER-AVIRAIVALG---LPARLMAWCRA---RDADIEAAARCGVDAVHISIPVSDLQIEAKLRK 106 (365)
T ss_pred CCEEEEe--CCCC-CHHHH-HHHHHHHHcC---CCcEEEEEcCC---CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCc
Confidence 5666664 6764 55443 3345554431 23566655554 578889999999999999884444445556776
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
.. ..+.+.++++.+++.|+. |.+.+..+ +.-+.+.+.+.++.+.+.+++.|.+
T Consensus 107 s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 107 DRAWVLERLARLVSFARDRGLF-VSVGGEDA-SRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred CHHHHHHHHHHHHHHHHhCCCE-EEEeecCC-CCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 53 345566899999999987 78776654 3456888888889999999987653
No 181
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=91.61 E-value=1 Score=39.83 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=52.3
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....|+...++.+..|.+.. .+...++.|++.|||....+. -+.|.-.|.|| ++
T Consensus 44 ~vL~~l~~~~~~t~~eLa~~l~i~~~-tvsr~l~~Le~~GlI~R~~~~------------------~DrR~~~l~LT-~~ 103 (144)
T PRK11512 44 KVLCSIRCAACITPVELKKVLSVDLG-ALTRMLDRLVCKGWVERLPNP------------------NDKRGVLVKLT-TS 103 (144)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeccCc------------------ccCCeeEeEEC-hh
Confidence 44555555678999999999999864 467889999999999875321 13455579997 99
Q ss_pred hhchHHHHH
Q 012112 454 GFLLSNELI 462 (471)
Q Consensus 454 G~~~~n~i~ 462 (471)
|..+.+.+.
T Consensus 104 G~~~~~~~~ 112 (144)
T PRK11512 104 GAAICEQCH 112 (144)
T ss_pred HHHHHHHHH
Confidence 999877653
No 182
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.48 E-value=5.5 Score=41.32 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=86.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
|+.|=+| .|.. ++...+ .++.+.+. + ....+..-++ ...+.++...++|+++|.+.+-+-+-...+.+++
T Consensus 40 V~~IE~G--~p~~-~~~~~e-~i~~i~~~-~--~~~~i~~~~r---~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~ 109 (378)
T PRK11858 40 VDQIEAG--FPAV-SEDEKE-AIKAIAKL-G--LNASILALNR---AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKK 109 (378)
T ss_pred CCEEEEe--CCCc-ChHHHH-HHHHHHhc-C--CCeEEEEEcc---cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCC
Confidence 5666554 7765 554433 34555442 2 2344444433 3577788889999999999997766667777876
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. ..+.+.++++.+++.|+. |.+....+. .-+.+.+.+.++.+.+.+++.|.+-
T Consensus 110 s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~-r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 110 TREEVLERMVEAVEYAKDHGLY-VSFSAEDAS-RTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred CHHHHHHHHHHHHHHHHHCCCe-EEEEeccCC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 53 456677789999999997 888766553 4578889999999999999987654
No 183
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.39 E-value=1.4 Score=43.84 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHc
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLC 211 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~ 211 (471)
++.+..|.+. .+..+..-+ | +.+-++.-.++|++.|.+.+-.-+-...+.+++.. ..+.+.++++.+++.
T Consensus 61 ~e~~~~l~~~----~~~~~~~l~-~---~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~ 132 (287)
T PRK05692 61 AEVMAGIQRR----PGVTYAALT-P---NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQA 132 (287)
T ss_pred HHHHHhhhcc----CCCeEEEEe-c---CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 4555555431 234454332 3 56777888899999999987555555566677653 456788999999999
Q ss_pred CCCeeEeeee--cCCCCC---CHHHHHHHHHHHHhCCCCcEEEE
Q 012112 212 GVENWSLDLI--SSLPHQ---TPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 212 G~~~v~~DlI--~GlPgq---T~e~~~~~l~~~~~l~p~his~y 250 (471)
|+. +...+. +|.|.. +++.+.+..+.+.+++++.|.+-
T Consensus 133 g~~-v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 175 (287)
T PRK05692 133 GVR-VRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLG 175 (287)
T ss_pred CCE-EEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 986 665555 576776 78889999999999999977543
No 184
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=90.66 E-value=1.4 Score=35.60 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=51.0
Q ss_pred hccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhch
Q 012112 378 SFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLL 457 (471)
Q Consensus 378 ~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~ 457 (471)
-|....++...++.+.++.+.. .+...+..|++.|++....+. -+.|.-++.|| ++|..+
T Consensus 18 ~l~~~~~~~~~~la~~~~~s~~-~i~~~l~~L~~~g~v~~~~~~------------------~~~r~~~~~lT-~~g~~~ 77 (101)
T smart00347 18 ILYEEGPLSVSELAKRLGVSPS-TVTRVLDRLEKKGLIRRLPSP------------------EDRRSVLVSLT-EEGREL 77 (101)
T ss_pred HHHHcCCcCHHHHHHHHCCCch-hHHHHHHHHHHCCCeEecCCC------------------CCCCeEEEEEC-HhHHHH
Confidence 3333456889999999988743 467899999999999865321 13455578997 999999
Q ss_pred HHHHHHHHHh
Q 012112 458 SNELISHAFG 467 (471)
Q Consensus 458 ~n~i~~~~~~ 467 (471)
.+.+...+..
T Consensus 78 ~~~~~~~~~~ 87 (101)
T smart00347 78 IEELLEARHE 87 (101)
T ss_pred HHHHHHHHHH
Confidence 9887666543
No 185
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=90.64 E-value=5.3 Score=39.21 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=66.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--C---CCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--G---VNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--G---vnrvsiGvQS~~d~~L 189 (471)
.+-|-+|++++.--..+.+..+++.+++..+ ..+++. +.+.+.++.--++ | +|.||..-+. +++++
T Consensus 39 AdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~----~plsID----T~~~~v~eaaL~~~~G~~iINsIs~~~~~-~~~~~ 109 (261)
T PRK07535 39 ADYLDVNAGTAVEEEPETMEWLVETVQEVVD----VPLCID----SPNPAAIEAGLKVAKGPPLINSVSAEGEK-LEVVL 109 (261)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhCC----CCEEEe----CCCHHHHHHHHHhCCCCCEEEeCCCCCcc-CHHHH
Confidence 6778899997643334566677777766543 335544 4455666555554 6 3444432222 33443
Q ss_pred HHcC-------------C--CCC----HHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHHHHHHHHHH
Q 012112 190 KSCG-------------R--AHG----LKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMWEESLRRTV 240 (471)
Q Consensus 190 ~~l~-------------R--~~t----~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~~~~l~~~~ 240 (471)
..+. + +.+ .+...+.++.+.++|+ +++-+|-.+|..|-+.+...++|+.+.
T Consensus 110 ~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~ 181 (261)
T PRK07535 110 PLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIR 181 (261)
T ss_pred HHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHH
Confidence 3211 1 112 2445666777888888 468888888866776666655555444
No 186
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=90.58 E-value=1.4 Score=37.00 Aligned_cols=64 Identities=17% Similarity=0.023 Sum_probs=51.3
Q ss_pred CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHH
Q 012112 383 RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELI 462 (471)
Q Consensus 383 ~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~ 462 (471)
.++...++.+..+.+-. .+...++.|++.|||....+. .+.|.-+|.|| ++|..+.+.++
T Consensus 42 ~~~t~~eL~~~l~~~~s-tvs~~i~~Le~kg~I~r~~~~------------------~D~R~~~i~lT-~~G~~~~~~~~ 101 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQS-ALVKIIKKLSKKGYLSKERSE------------------DDERKVIISIN-KEQRSKIESLI 101 (109)
T ss_pred CcCcHHHHHHHHCCCHH-HHHHHHHHHHHCCCEeccCCc------------------ccCCeEEEEEC-HHHHHHHHHHH
Confidence 56999999999999853 577899999999999864321 24566689997 99999999988
Q ss_pred HHHH
Q 012112 463 SHAF 466 (471)
Q Consensus 463 ~~~~ 466 (471)
.++=
T Consensus 102 ~~~~ 105 (109)
T TIGR01889 102 SEIE 105 (109)
T ss_pred HHHH
Confidence 7763
No 187
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=90.44 E-value=8.2 Score=38.07 Aligned_cols=127 Identities=13% Similarity=0.178 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecC--CCC---CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP--GTF---DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P--~~l---~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
++.|=+| .|.. ++..+.. ++.+.+.. + .+.++...+.+ ..+ +...++...++|++.|.+.+=+-+-...
T Consensus 34 v~~IE~G--~~~~-~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~ 107 (273)
T cd07941 34 VDYIEGG--WPGS-NPKDTEF-FARAKKLK-L-KHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVT 107 (273)
T ss_pred CCEEEec--CCcC-CHHHHHH-HHHHHHcC-C-CCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHH
Confidence 6666664 3432 5555443 34444321 1 23456655522 222 3457888899999998886655555566
Q ss_pred HHcCCC--CCHHHHHHHHHHHHHcCCCeeEeeeecCC---CCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 190 KSCGRA--HGLKEVYEAIEIVKLCGVENWSLDLISSL---PHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 190 ~~l~R~--~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl---PgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
+.+|+. ...+.+.++++.+++.|+. |.+..+ .+ +.-+++.+.+.++.+.+.+++.|++
T Consensus 108 ~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~-~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l 170 (273)
T cd07941 108 EALGTTLEENLAMIRDSVAYLKSHGRE-VIFDAE-HFFDGYKANPEYALATLKAAAEAGADWLVL 170 (273)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEeEE-eccccCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 777776 4677888999999999996 777533 22 2346777888889999999987654
No 188
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=90.30 E-value=0.58 Score=45.31 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-------cCCCCCH
Q 012112 91 VSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-------DPGTFDA 163 (471)
Q Consensus 91 ~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-------~P~~l~~ 163 (471)
-.++++.+++-.-.+ ++.+-||+||..+.+.+.+++.++..+++ ++.+..-. .+ .--+
T Consensus 23 g~~~~~dlLe~ag~y---------ID~~K~g~Gt~~l~~~~~l~eki~l~~~~-----gV~v~~GGtl~E~a~~q-~~~~ 87 (244)
T PF02679_consen 23 GLRYLEDLLESAGDY---------IDFLKFGWGTSALYPEEILKEKIDLAHSH-----GVYVYPGGTLFEVAYQQ-GKFD 87 (244)
T ss_dssp -HHHHHHHHHHHGGG----------SEEEE-TTGGGGSTCHHHHHHHHHHHCT-----T-EEEE-HHHHHHHHHT-T-HH
T ss_pred CHHHHHHHHHHhhhh---------ccEEEecCceeeecCHHHHHHHHHHHHHc-----CCeEeCCcHHHHHHHhc-ChHH
Confidence 345666665443222 78899999999999999999999988864 22222211 12 2246
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--C----CCCHHHHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--P----HQTPQMWEESLR 237 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--P----gqT~e~~~~~l~ 237 (471)
+.++.+++.|++.|.|.-=|. ..+.++..+.|+.+++.||. |-.- +|- | -.|.+.|.+.++
T Consensus 88 ~yl~~~k~lGf~~IEiSdGti----------~l~~~~r~~~I~~~~~~Gf~-v~~E--vG~K~~~~~~~~~~~~~i~~~~ 154 (244)
T PF02679_consen 88 EYLEECKELGFDAIEISDGTI----------DLPEEERLRLIRKAKEEGFK-VLSE--VGKKDPESDFSLDPEELIEQAK 154 (244)
T ss_dssp HHHHHHHHCT-SEEEE--SSS-------------HHHHHHHHHHHCCTTSE-EEEE--ES-SSHHHHTT--CCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCce----------eCCHHHHHHHHHHHHHCCCE-Eeec--ccCCCchhcccCCHHHHHHHHH
Confidence 999999999999876654443 13456666789999999997 3332 232 1 124668888888
Q ss_pred HHHhCCCCcEEE
Q 012112 238 RTVGAQPKHVSV 249 (471)
Q Consensus 238 ~~~~l~p~his~ 249 (471)
..++.+.+.|-+
T Consensus 155 ~dLeAGA~~Vii 166 (244)
T PF02679_consen 155 RDLEAGADKVII 166 (244)
T ss_dssp HHHHHTECEEEE
T ss_pred HHHHCCCCEEEE
Confidence 889999887644
No 189
>PRK15452 putative protease; Provisional
Probab=89.21 E-value=2.2 Score=45.11 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=67.5
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC-CHHHHHHHHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ-TPQMWEESLRRTV 240 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq-T~e~~~~~l~~~~ 240 (471)
+.+.++...++|.+.|-+|.++|+-+.. ....+.+++.++++.+++.|.+ |.+- +--+|.+ ..+.+.+.++.+.
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~k-vyvt-~n~i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGKK-FYVV-VNIAPHNAKLKTFIRDLEPVI 86 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCCE-EEEE-ecCcCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999999987653 3566889999999999999976 4332 2234444 4567788888888
Q ss_pred hCCCCcEEEEec
Q 012112 241 GAQPKHVSVYDL 252 (471)
Q Consensus 241 ~l~p~his~y~l 252 (471)
++++|-|-+-.+
T Consensus 87 ~~gvDgvIV~d~ 98 (443)
T PRK15452 87 AMKPDALIMSDP 98 (443)
T ss_pred hCCCCEEEEcCH
Confidence 999998777654
No 190
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=89.14 E-value=1.5 Score=45.37 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=64.2
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe--------eeecCCCCC--CHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL--------DLISSLPHQ--TPQM 231 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~--------DlI~GlPgq--T~e~ 231 (471)
++-.|+.++++|++.|...+-...+ |..=+.+++.+..+.+.++|+. +++ |+..|.|+- -.+.
T Consensus 12 d~v~l~~irQ~G~~giV~al~~~p~------gevW~~~~i~~~k~~ie~~GL~-~~vvEs~pv~e~Ik~g~~~rd~~Ien 84 (394)
T TIGR00695 12 DPVSLEDVRQAGATGIVTALHHIPN------GEVWEKEEIRKRKEYIESAGLH-WSVVESVPVHEAIKTGTGNYGRWIEN 84 (394)
T ss_pred CcchHHHHhhcCCcceeecCCCCCC------CCCCCHHHHHHHHHHHHHcCCe-EEEEeCCCccHHHHcCCCcHHHHHHH
Confidence 3445666777898888766644432 4455788888888888888886 666 888888874 4677
Q ss_pred HHHHHHHHHhCCCCcEEEEeccccC
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
++++|+-+-+.+++ +-+|.+++.-
T Consensus 85 yk~~irNla~~GI~-vicYNFMPv~ 108 (394)
T TIGR00695 85 YKQTLRNLAQCGIK-TVCYNFMPVL 108 (394)
T ss_pred HHHHHHHHHHcCCC-EEEEEecccc
Confidence 88899999999987 5578888643
No 191
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.08 E-value=8.5 Score=41.37 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=85.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+| .|.. ++...+. ++.+.+. ....++..-+++ ..+.++...++|+++|.+.+=+-+-.....+++
T Consensus 38 v~~IE~G--~p~~-~~~d~e~-v~~i~~~---~~~~~i~a~~r~---~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~ 107 (488)
T PRK09389 38 VDVIEAG--SAIT-SEGEREA-IKAVTDE---GLNAEICSFARA---VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKK 107 (488)
T ss_pred CCEEEEe--CCcC-CHHHHHH-HHHHHhc---CCCcEEEeeccc---CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCC
Confidence 5655554 5653 5555444 3444432 234677766654 356688888999999999886655555666666
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. ..+.+.++++.+++.|+. |.+++.-+ ..-+++-+.+.++.+.+.+++.|.+-
T Consensus 108 s~~e~l~~~~~~v~~ak~~g~~-v~~~~ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 108 TREEVLETAVEAVEYAKDHGLI-VELSGEDA-SRADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred CHHHHHHHHHHHHHHHHHCCCE-EEEEEeeC-CCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 43 456777888899999986 88888754 45568888899999999999987553
No 192
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.97 E-value=8.7 Score=42.29 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=81.8
Q ss_pred eeEEEEcCC-CCC----CCCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TPS----LVPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tps----~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.+|=++|| |+- +++++-.++ ++.+++.. ++..+.+-++ |+++-++.++...++|++.|.+
T Consensus 40 ~~~iE~~ggatfd~~~rfl~edp~e~-l~~l~~~~---~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~iri 115 (592)
T PRK09282 40 FWSLEVWGGATFDVCIRYLNEDPWER-LRKLKKAL---PNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRI 115 (592)
T ss_pred CCEEEecCCccchhhcccCCccHHHH-HHHHHHhC---CCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEE
Confidence 555556665 532 356555544 46666553 3345555544 6667778899999999998777
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. +.|+ ...+..+++.++++|.. +...+-| +-|--|++.+.+.++.+.+.+++.|.+-
T Consensus 116 f~-~lnd-----------~~n~~~~i~~ak~~G~~-v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~ 174 (592)
T PRK09282 116 FD-ALND-----------VRNMEVAIKAAKKAGAH-VQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK 174 (592)
T ss_pred EE-ecCh-----------HHHHHHHHHHHHHcCCE-EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 43 3344 25678889999999986 6655533 2388899999999999999999877554
No 193
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.72 E-value=7 Score=38.26 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=67.4
Q ss_pred CcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 149 DAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 149 ~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
+.++.+-++|.....+.++...+.|++.+.+.+ +.++ ...+.++++.+++.|+. +.+.++-.. .-+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~G~~-v~~~~~~~~-~~~ 139 (263)
T cd07943 74 QAKLGVLLLPGIGTVDDLKMAADLGVDVVRVAT-HCTE-----------ADVSEQHIGAARKLGMD-VVGFLMMSH-MAS 139 (263)
T ss_pred CCEEEEEecCCccCHHHHHHHHHcCCCEEEEEe-chhh-----------HHHHHHHHHHHHHCCCe-EEEEEEecc-CCC
Confidence 457776666766677889999999999887754 3332 23678899999999997 888876553 468
Q ss_pred HHHHHHHHHHHHhCCCCcEEE
Q 012112 229 PQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~ 249 (471)
++.+.+.++.+.+.+++.|++
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 140 PEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 899999999999999997754
No 194
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=88.38 E-value=2.4 Score=37.30 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHhcccc-CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSFRTA-RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~Lr~~-~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
++..|... .|+...++.+.+|.+-. .+...+++|++.|||+...+. .+.|.-.|.|| ++
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~~~~-tvt~~v~~Le~~GlV~r~~~~------------------~DrR~~~l~LT-~~ 95 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGIEQP-SLVRTLDQLEEKGLISRQTCA------------------SDRRAKRIKLT-EK 95 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChh-hHHHHHHHHHHCCCEeeecCC------------------CCcCeeeeEEC-hH
Confidence 44444433 46889999999999864 567899999999999876321 13455679997 99
Q ss_pred hhchHHHHHH
Q 012112 454 GFLLSNELIS 463 (471)
Q Consensus 454 G~~~~n~i~~ 463 (471)
|..+.+.+..
T Consensus 96 G~~~~~~~~~ 105 (144)
T PRK03573 96 AEPLISEVEA 105 (144)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 195
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.29 E-value=4.9 Score=39.75 Aligned_cols=101 Identities=14% Similarity=0.231 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..++..+.+++... +++.|++. +|-..+.|.++.+++..+++.++ ..+.+-+ +.+.-....+..+
T Consensus 148 ~~~~~~~~~~~~~~--------Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~aN~laA~ 214 (275)
T cd07937 148 LEYYVKLAKELEDM--------GADSICIK-DMAGLLTPYAAYELVKALKKEVG----LPIHLHTHDTSGLAVATYLAAA 214 (275)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEEc-CCCCCCCHHHHHHHHHHHHHhCC----CeEEEEecCCCChHHHHHHHHH
Confidence 44555566666543 26778887 47788899999999999999875 2344444 3443355666666
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+.. ||+.......++.+..++..|++
T Consensus 215 -~aGa~~vd~sv~G--------lG~~aGN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 215 -EAGVDIVDTAISP--------LSGGTSQPSTESMVAALRGTGRD 250 (275)
T ss_pred -HhCCCEEEEeccc--------ccCCcCChhHHHHHHHHHccCCC
Confidence 5799999887766 56666666666667777766765
No 196
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.14 E-value=9.3 Score=40.77 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=79.0
Q ss_pred eeEEEEcCC-CC----CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe----------cCCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TP----SLVPPRFVSSILDTLTDKFGLSLDAEISMEM----------DPGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tp----s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~----------~P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.+|=+||| |+ ++++++. .+.++.+++.. ++..+.+-+ .|+++-+..++...++|++.|.+
T Consensus 39 v~~IE~~ggatfd~~~~Fl~e~p-~e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~iri 114 (467)
T PRK14041 39 FYSMEVWGGATFDVCVRFLNENP-WERLKEIRKRL---KNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRI 114 (467)
T ss_pred CCEEEecCCccchhhhcccCCCH-HHHHHHHHHhC---CCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEE
Confidence 555555555 32 3455443 34455665543 234555432 34555566688888999998888
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeE--eeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWS--LDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~--~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. +.|+ .+.+..+++.+++.|.. +. ++..++ |--|.+-+.+..+.+.+.+++.|.+-
T Consensus 115 f~-~lnd-----------~~n~~~~i~~ak~~G~~-v~~~i~~t~~-p~~t~e~~~~~a~~l~~~Gad~I~i~ 173 (467)
T PRK14041 115 FD-ALND-----------IRNLEKSIEVAKKHGAH-VQGAISYTVS-PVHTLEYYLEFARELVDMGVDSICIK 173 (467)
T ss_pred EE-eCCH-----------HHHHHHHHHHHHHCCCE-EEEEEEeccC-CCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 55 4555 34578889999999985 55 444455 88899999999999999999877553
No 197
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=87.92 E-value=2.7 Score=39.05 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=53.8
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....|+...++++..+.+.. .....+++|+++|||....+. .+.|.-+|.|| ++
T Consensus 49 ~iL~~L~~~~~itq~eLa~~l~l~~s-Tvtr~l~rLE~kGlI~R~~~~------------------~DrR~~~I~LT-ek 108 (185)
T PRK13777 49 HILWIAYHLKGASISEIAKFGVMHVS-TAFNFSKKLEERGYLTFSKKE------------------DDKRNTYIELT-EK 108 (185)
T ss_pred HHHHHHHhCCCcCHHHHHHHHCCCHh-hHHHHHHHHHHCCCEEecCCC------------------CCCCeeEEEEC-HH
Confidence 45566666789999999998877643 366789999999999865211 13455579997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|..+.+.+....
T Consensus 109 G~~l~~~l~~~~ 120 (185)
T PRK13777 109 GEELLLETMEEY 120 (185)
T ss_pred HHHHHHHHHHHH
Confidence 999998875543
No 198
>PRK00915 2-isopropylmalate synthase; Validated
Probab=87.83 E-value=12 Score=40.38 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=85.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
++.|=+| .|.. ++...+.+ +.+.+.. .+.+++.-+++..-+ +..++.++++|+.+|.+-+=+.+-.+...++
T Consensus 40 v~~IE~G--~p~~-s~~d~~~v-~~i~~~~---~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~ 112 (513)
T PRK00915 40 VDVIEAG--FPAS-SPGDFEAV-KRIARTV---KNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLK 112 (513)
T ss_pred CCEEEEc--CCCC-ChHHHHHH-HHHHhhC---CCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhC
Confidence 6666554 6654 66665554 4454332 346777776543211 2234445588999999988777777777777
Q ss_pred CCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 194 RAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 194 R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
+.. ..+.+.++++.+++.|.. |.++...+. .-+++-+.+.++.+.+.+++.|.+-
T Consensus 113 ~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l~ 169 (513)
T PRK00915 113 MSREEVLEMAVEAVKYARSYTDD-VEFSAEDAT-RTDLDFLCRVVEAAIDAGATTINIP 169 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 653 455567899999999987 777776654 3357778889999999999876543
No 199
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=87.11 E-value=16 Score=39.71 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecC--CCC---CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP--GTF---DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P--~~l---~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
|+.|=. |.|.. ++.+.+.+- .+.+. ++ .+.++..-+++ ..+ .+..++.+.++|..+|.+-+=+-+-...
T Consensus 37 Vd~IE~--G~p~~-s~~d~~~v~-~i~~~-~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~ 110 (526)
T TIGR00977 37 IHYIEG--GWPGA-NPKDVQFFW-QLKEM-NF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVL 110 (526)
T ss_pred CCEEEE--eCCCC-ChHHHHHHH-HHHHh-CC-CCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHH
Confidence 555554 46654 666655443 33321 22 24677776543 222 2567899999999999998888777788
Q ss_pred HHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeee---cCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 190 KSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLI---SSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 190 ~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI---~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
+.+++.. ..+.+.++++.+++.|.. |..+.+ -|.- -+++-+.+.++.+.+.+++.|.+-
T Consensus 111 ~~l~~s~ee~l~~~~~~v~~ak~~g~~-V~~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 111 EALQTTLEENLAMIYDTVAYLKRQGDE-VIYDAEHFFDGYK-ANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeeeeccc-CCHHHHHHHHHHHHhCCCCeEEEe
Confidence 8887653 566677889999999987 665444 3432 467888899999999999988665
No 200
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=87.07 E-value=4.2 Score=35.79 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=45.4
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.+.|..-+.....+..+++++.+|.+.. .+...++.|.+.|+|..... ..|+||
T Consensus 10 L~~I~~l~~~~~~~~~~ela~~l~vs~~-svs~~l~~L~~~Gli~~~~~------------------------~~i~LT- 63 (142)
T PRK03902 10 IEQIYLLIEEKGYARVSDIAEALSVHPS-SVTKMVQKLDKDEYLIYEKY------------------------RGLVLT- 63 (142)
T ss_pred HHHHHHHHhcCCCcCHHHHHHHhCCChh-HHHHHHHHHHHCCCEEEecC------------------------ceEEEC-
Confidence 3333333344455777888888888743 56778999999999985431 258996
Q ss_pred chhhchHHHH
Q 012112 452 PEGFLLSNEL 461 (471)
Q Consensus 452 ~~G~~~~n~i 461 (471)
++|..++..+
T Consensus 64 ~~G~~~a~~~ 73 (142)
T PRK03902 64 PKGKKIGKRL 73 (142)
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 201
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=86.79 E-value=1.4 Score=38.62 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=43.2
Q ss_pred cccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHH
Q 012112 380 RTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSN 459 (471)
Q Consensus 380 r~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n 459 (471)
|.+.|---..|.+-.| ......+++|++.||++...++| .|| ++|+-+.|
T Consensus 80 ~k~rG~rP~~~~~gsg----sI~RkilqqLE~~G~V~k~~~GR-------------------------~lt-p~GrsllD 129 (147)
T COG2238 80 RKNRGSRPEKFRKGSG----SIIRKVLQQLEKAGLVEKTPKGR-------------------------VLT-PKGRSLLD 129 (147)
T ss_pred cccCCCCchhhhcCCc----hHHHHHHHHHHHCCceeecCCCc-------------------------eeC-ccchhHHH
Confidence 4555655555544333 23567899999999999766332 675 99999999
Q ss_pred HHHHHHHhccc
Q 012112 460 ELISHAFGVID 470 (471)
Q Consensus 460 ~i~~~~~~~~~ 470 (471)
.++.++...++
T Consensus 130 ~~a~ei~eel~ 140 (147)
T COG2238 130 RIATEIKEELE 140 (147)
T ss_pred HHHHHHHHHhc
Confidence 99999877654
No 202
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=86.73 E-value=25 Score=34.98 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=68.2
Q ss_pred eeEEEEcCCC--C---CCCCHHHHHHHH---HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE---EEccCC
Q 012112 115 LETVFFGGGT--P---SLVPPRFVSSIL---DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV---SLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGT--p---s~l~~~~l~~ll---~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv---siGvQS 183 (471)
.+-|-+||.. | -+-..+++++++ +.|++.+ +..+++. +...+.++..-++|++-| + |+.
T Consensus 52 AdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISID----T~~~~va~~AL~~GadiINDI~-g~~- 121 (282)
T PRK11613 52 ATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----EVWISVD----TSKPEVIRESAKAGAHIINDIR-SLS- 121 (282)
T ss_pred CcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEE----CCCHHHHHHHHHcCCCEEEECC-CCC-
Confidence 5667788532 2 222235666655 4444332 2345554 677888888888896654 3 443
Q ss_pred CCHHHHHHcCCC-------C------C--------------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHH
Q 012112 184 FQDELLKSCGRA-------H------G--------------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 184 ~~d~~L~~l~R~-------~------t--------------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~ 234 (471)
+++.++.+.+. | + .+...+.++.+.++|+. +|-+|--+|+ +.|.++=.+
T Consensus 122 -d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF-~k~~~~n~~ 199 (282)
T PRK11613 122 -EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGF-GKNLSHNYQ 199 (282)
T ss_pred -CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc-CCCHHHHHH
Confidence 56655533221 1 1 13446677888899996 7889998898 666655444
Q ss_pred HHHHHHh
Q 012112 235 SLRRTVG 241 (471)
Q Consensus 235 ~l~~~~~ 241 (471)
.++.+..
T Consensus 200 ll~~l~~ 206 (282)
T PRK11613 200 LLARLAE 206 (282)
T ss_pred HHHHHHH
Confidence 4444433
No 203
>PRK10870 transcriptional repressor MprA; Provisional
Probab=86.50 E-value=3.3 Score=38.08 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=51.7
Q ss_pred HHHHhccc--cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 374 VLMLSFRT--ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 374 ~~~~~Lr~--~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.++..|.. ..++...++++.+|.+-. .+...+++|+++|||+...+. .+.|+-.|+||
T Consensus 59 ~iL~~L~~~~~~~it~~eLa~~l~l~~~-tvsr~v~rLe~kGlV~R~~~~------------------~DrR~~~v~LT- 118 (176)
T PRK10870 59 MALITLESQENHSIQPSELSCALGSSRT-NATRIADELEKRGWIERRESD------------------NDRRCLHLQLT- 118 (176)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEecCCC------------------CCCCeeEEEEC-
Confidence 34455543 345888999999998864 467789999999999875321 23566689997
Q ss_pred chhhchHHHHHH
Q 012112 452 PEGFLLSNELIS 463 (471)
Q Consensus 452 ~~G~~~~n~i~~ 463 (471)
++|..+.+.+..
T Consensus 119 ~~G~~~~~~i~~ 130 (176)
T PRK10870 119 EKGHEFLREVLP 130 (176)
T ss_pred HHHHHHHHHHHH
Confidence 999999988744
No 204
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=86.32 E-value=3.4 Score=39.37 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=52.4
Q ss_pred HHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhh
Q 012112 376 MLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGF 455 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~ 455 (471)
+.++....++...++++..|.+-. .....+++|++.||+...... |...++|| ++|.
T Consensus 13 lg~l~~~~~IS~~eLA~~L~iS~~-Tvsr~Lk~LEe~GlI~R~~~~---------------------r~~~v~LT-ekG~ 69 (217)
T PRK14165 13 LGAVNNTVKISSSEFANHTGTSSK-TAARILKQLEDEGYITRTIVP---------------------RGQLITIT-EKGL 69 (217)
T ss_pred HhccCCCCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEEcC---------------------CceEEEEC-HHHH
Confidence 445555567888899999988854 567889999999999875321 22368997 9999
Q ss_pred chHHHHHHHHHhc
Q 012112 456 LLSNELISHAFGV 468 (471)
Q Consensus 456 ~~~n~i~~~~~~~ 468 (471)
.+....+.++-..
T Consensus 70 ~ll~~~~~d~~~i 82 (217)
T PRK14165 70 DVLYNEYADYSRI 82 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887776443
No 205
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=86.13 E-value=4.9 Score=35.89 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHhccccCCCCHhhHHHHhCCC------hH-------HHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcc
Q 012112 375 LMLSFRTARGVDLKSFGETFGCS------LV-------HTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIG 441 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~------~~-------~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~ 441 (471)
|+-.+-...++-...+.+.||.. .. ......|+.|++.||++...+
T Consensus 58 IlR~vY~~gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~~~--------------------- 116 (150)
T PRK09333 58 ILRKVYIDGPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKTKK--------------------- 116 (150)
T ss_pred HHHHHHHcCCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeCCC---------------------
Confidence 34444455788889999988862 11 125678999999999986442
Q ss_pred cccceeeecCchhhchHHHHHHHHHhcc
Q 012112 442 NRLAYFRLSDPEGFLLSNELISHAFGVI 469 (471)
Q Consensus 442 ~~~~~~~lt~~~G~~~~n~i~~~~~~~~ 469 (471)
.| +|| ++|.-+.|.|..+++..+
T Consensus 117 GR----~lT-~~G~~~LD~iA~~i~~~~ 139 (150)
T PRK09333 117 GR----VIT-PKGRSLLDNLAAEVKKEL 139 (150)
T ss_pred CC----EeC-HHHHHHHHHHHHHHHHHH
Confidence 23 675 999999999998877654
No 206
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=86.11 E-value=13 Score=40.39 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=83.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCC---CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTF---DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l---~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
++.|=+| .|.. ++...+ .++.|.+. ++ .+.+++..+. ...+ ++..++.+.++|+++|.+.+-+-+-...
T Consensus 41 vd~IEvG--~p~a-s~~d~~-~~~~i~~~-~l-~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~ 114 (524)
T PRK12344 41 VDYIEGG--WPGS-NPKDTE-FFKRAKEL-KL-KHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVT 114 (524)
T ss_pred CCEEEEc--CCcC-ChhHHH-HHHHHHHh-CC-CCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHH
Confidence 5666553 5543 455433 34444431 22 2345555542 2233 4567888999999999999887776677
Q ss_pred HHcCCC--CCHHHHHHHHHHHHHcCCCeeEeeee--cCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 190 KSCGRA--HGLKEVYEAIEIVKLCGVENWSLDLI--SSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 190 ~~l~R~--~t~~~~~~ai~~~~~~G~~~v~~DlI--~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
+.+++. ...+.+.++++.+++.|.. |.++.+ +.-+-.+++-+.+-++.+.+.++++|.+
T Consensus 115 ~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l 177 (524)
T PRK12344 115 EALRTTLEENLAMIRDSVAYLKAHGRE-VIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVL 177 (524)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEccccccccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 777764 3567788899999999986 665444 1112345677788888889999998763
No 207
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=4.5 Score=41.46 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=65.8
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
+-+.+...-++|++.|-+|.+-++-+... ...+.+++.++++.++++|.+ +-+-+=.-+.....+.|.+.|+.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk-~~V~~N~~~~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKK-VYVAVNTLLHNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCe-EEEEeccccccchhhHHHHHHHHHHH
Confidence 67888888889999999999966543332 457899999999999999986 33322222334567779999999999
Q ss_pred CCCCcEEEEec
Q 012112 242 AQPKHVSVYDL 252 (471)
Q Consensus 242 l~p~his~y~l 252 (471)
+++|.|-+-.+
T Consensus 91 ~GvDaviv~Dp 101 (347)
T COG0826 91 LGVDAVIVADP 101 (347)
T ss_pred cCCCEEEEcCH
Confidence 99998766553
No 208
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=85.93 E-value=8.6 Score=42.31 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=78.2
Q ss_pred eeEEEEcCC-CCCC----CCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TPSL----VPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tps~----l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.++=++|| |+-. +..+.. +-++.+++.. +++.+.+-++ |+++-++.++...++|++.+.+
T Consensus 41 ~~siE~~GGatf~~~~~~~~e~p~-e~lr~l~~~~---~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~ri 116 (593)
T PRK14040 41 YWSLESWGGATFDACIRFLGEDPW-ERLRELKKAM---PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRV 116 (593)
T ss_pred CCEEEecCCcchhhhccccCCCHH-HHHHHHHHhC---CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEE
Confidence 556656555 4321 344443 3355566543 3445544443 5555667789999999998888
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. ++++ .+.+..+++.+++.|.. +...+-| +-|-.|.+-+.+.++.+.+.+++.|.+-
T Consensus 117 fd-~lnd-----------~~~~~~ai~~ak~~G~~-~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~ 175 (593)
T PRK14040 117 FD-AMND-----------PRNLETALKAVRKVGAH-AQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK 175 (593)
T ss_pred ee-eCCc-----------HHHHHHHHHHHHHcCCe-EEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC
Confidence 73 4444 35788899999999985 3332222 3577889999999999999999877554
No 209
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=85.45 E-value=7.3 Score=41.36 Aligned_cols=101 Identities=7% Similarity=0.231 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|++. +|-.++.|.++.+++.++++.++ ..+.+-+ +.+.-....++++
T Consensus 153 ~~~~~~~a~~l~~~--------Gad~I~i~-Dt~G~l~P~~v~~lv~alk~~~~----~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 153 IDYFVKLAKEMQEM--------GADSICIK-DMAGILTPYVAYELVKRIKEAVT----VPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCCcHHHHHHHHH
Confidence 34555566666543 26789997 48888999999999999999875 2455444 3333345556555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-. ++.+.........+..++..|++
T Consensus 220 -eaGad~vD~sv~g--------lg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 220 -EAGADIIDTAISP--------FAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred -HcCCCEEEeeccc--------cCCCcCCHhHHHHHHHHHhcCCC
Confidence 7899999888875 45555455566666666777776
No 210
>PRK03906 mannonate dehydratase; Provisional
Probab=85.26 E-value=3.4 Score=42.93 Aligned_cols=85 Identities=20% Similarity=0.422 Sum_probs=52.4
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe--------eeecCCCCC--CHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL--------DLISSLPHQ--TPQM 231 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~--------DlI~GlPgq--T~e~ 231 (471)
++..|+.++++|++.|.-.+-... .|..=+.+++.+.-+.+.++|+. +++ |+..|.|+- -.+.
T Consensus 12 d~~~l~~~rQ~G~~~iv~~l~~~~------~g~~W~~~~i~~~~~~ie~~Gl~-~~vvEs~pv~~~Ik~g~~~rd~~ie~ 84 (385)
T PRK03906 12 DPVTLEDIRQPGATGIVTALHDIP------VGEVWPVEEILARKAEIEAAGLE-WSVVESVPVHEDIKTGTPNRDRYIEN 84 (385)
T ss_pred CcchHHHHhcCCCCceeecCCCCC------CCCCCCHHHHHHHHHHHHHcCCe-EEEEeCCCccHHHHcCCCCHHHHHHH
Confidence 455666667777776665543332 23444667777777777777775 555 677777663 3456
Q ss_pred HHHHHHHHHhCCCCcEEEEeccc
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~ 254 (471)
+.++|+.+-+.+++ +-+|.+++
T Consensus 85 y~~sirnlg~~GI~-~icYnfmp 106 (385)
T PRK03906 85 YKQTLRNLAAAGIK-VVCYNFMP 106 (385)
T ss_pred HHHHHHHHHhcCCc-EEEecCcc
Confidence 66777777777766 33555544
No 211
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.01 E-value=8.9 Score=35.14 Aligned_cols=111 Identities=15% Similarity=0.038 Sum_probs=73.8
Q ss_pred HHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe--eeecCCCC-----CC------HHHH
Q 012112 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL--DLISSLPH-----QT------PQMW 232 (471)
Q Consensus 166 l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~--DlI~GlPg-----qT------~e~~ 232 (471)
++.++++|++.|.+......+.... ..++.+..+.++++|+.-+++ ......+. .. .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Confidence 5678999999999988777665554 667888888999999973333 33333321 23 7889
Q ss_pred HHHHHHHHhCCCCcEEEEecc--ccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 233 EESLRRTVGAQPKHVSVYDLQ--VEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y~l~--~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+.++.+..++++.+.+..-. ..+..... ...+...+.+..+.+.+++.|.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~----------~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE----------ENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHH----------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHH----------HHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999988877531 11111000 1224456667777777777674
No 212
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=84.71 E-value=8.6 Score=41.33 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|+|.+ |-.++.|..+.+++..|++.++ ++..|.+-++ .+.-....+++
T Consensus 154 ~e~~~~~a~~l~~~--------Gad~I~IkD-taGll~P~~~~~LV~~Lk~~~~--~~ipI~~H~Hnt~GlA~An~laA- 221 (499)
T PRK12330 154 VEGFVEQAKRLLDM--------GADSICIKD-MAALLKPQPAYDIVKGIKEACG--EDTRINLHCHSTTGVTLVSLMKA- 221 (499)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEeCC-CccCCCHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCcHHHHHHHH-
Confidence 34555566666543 267899964 8888999999999999999864 2456666664 33224444444
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
.++|++.|...+-++ +.+.+....+..+..++..|++ .++|
T Consensus 222 ieAGad~vDtai~Gl--------g~~aGn~atE~vv~~L~~~g~~-tgiD 262 (499)
T PRK12330 222 IEAGVDVVDTAISSM--------SLGPGHNPTESLVEMLEGTGYT-TKLD 262 (499)
T ss_pred HHcCCCEEEeecccc--------cccccchhHHHHHHHHHhcCCC-CCCC
Confidence 478999999888886 3333334455566666667776 3443
No 213
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.68 E-value=8.3 Score=37.74 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=59.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.|++. +|-..+.|.++.++++.+++.++. .++.+-+ +.+.-....+..+ ++|++.|.-.+-. |
T Consensus 155 ~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hn~~GlA~AN~laAi-~aGa~~vd~s~~G--------l 221 (263)
T cd07943 155 ADCVYVT-DSAGAMLPDDVRERVRALREALDP---TPVGFHGHNNLGLAVANSLAAV-EAGATRIDGSLAG--------L 221 (263)
T ss_pred CCEEEEc-CCCCCcCHHHHHHHHHHHHHhCCC---ceEEEEecCCcchHHHHHHHHH-HhCCCEEEeeccc--------c
Confidence 6778886 578888999999999999998753 2444444 3433355666666 5799988776655 5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 012112 193 GRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
|+....-..+..+..++..|+.
T Consensus 222 G~~aGN~~~E~lv~~L~~~g~~ 243 (263)
T cd07943 222 GAGAGNTPLEVLVAVLERMGIE 243 (263)
T ss_pred cCCcCCccHHHHHHHHHhcCCC
Confidence 6665545555555556666665
No 214
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=84.52 E-value=23 Score=37.86 Aligned_cols=101 Identities=13% Similarity=0.264 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|+|.+ |-.++.|.++.+++..+++.+++ .+.+-+ +.+.-....++++
T Consensus 152 ~e~~~~~a~~l~~~--------Gad~I~i~D-t~G~l~P~~v~~Lv~~lk~~~~v----pI~~H~Hnt~GlA~AN~laAi 218 (467)
T PRK14041 152 LEYYLEFARELVDM--------GVDSICIKD-MAGLLTPKRAYELVKALKKKFGV----PVEVHSHCTTGLASLAYLAAV 218 (467)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEECC-ccCCcCHHHHHHHHHHHHHhcCC----ceEEEecCCCCcHHHHHHHHH
Confidence 34555566666543 267899964 88889999999999999998753 344444 3333345556555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-. ++++.+.-.....+..++..|++
T Consensus 219 -eaGad~vD~sv~~--------~g~gagN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 219 -EAGADMFDTAISP--------FSMGTSQPPFESMYYAFRENGKE 254 (467)
T ss_pred -HhCCCEEEeeccc--------cCCCCCChhHHHHHHHHHhcCCC
Confidence 7799999887775 44555555566666666777775
No 215
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=84.30 E-value=18 Score=35.46 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=74.2
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee------ecCCCCC-----CHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL------ISSLPHQ-----TPQ 230 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl------I~GlPgq-----T~e 230 (471)
=.+.++.++++|++.|.+++-..+.. +..+ ..+.++..+..+.++++|+.-.++.+ -++-|.. ..+
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~ 94 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDR-LSRL--DWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLE 94 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccch-hhcc--CCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHH
Confidence 46889999999999999987664322 1111 23567777888889999997323321 1122221 234
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eec
Q 012112 231 MWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYE 297 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~ye 297 (471)
.+++.++.+.+++.+.|.+....... +.......+...+.+..+.+..++.|-. .+|
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~----------~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYY----------EEHDEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCccccc----------CcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 57788888889999888653211100 1000111234456667778888888864 455
No 216
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=84.26 E-value=8.9 Score=37.43 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..++..+.+++... +++.|++.+ |-..+.|+++.+++..+++.++ .++.+-+ +.+.-....+..+
T Consensus 138 ~~~~~~~~~~~~~~--------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hn~~Gla~An~laAi 204 (259)
T cd07939 138 PDFLIEFAEVAQEA--------GADRLRFAD-TVGILDPFTTYELIRRLRAATD----LPLEFHAHNDLGLATANTLAAV 204 (259)
T ss_pred HHHHHHHHHHHHHC--------CCCEEEeCC-CCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHH
Confidence 44555555555432 267788864 7778899999999999998875 2344444 4443455666666
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC-GVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~-G~~ 214 (471)
++|+++|.-.+-. ||++......+..+..++.. |+.
T Consensus 205 -~aG~~~vd~s~~G--------~G~~aGN~~tE~lv~~l~~~~g~~ 241 (259)
T cd07939 205 -RAGATHVSVTVNG--------LGERAGNAALEEVVMALKHLYGRD 241 (259)
T ss_pred -HhCCCEEEEeccc--------ccccccCcCHHHHHHHHHHhcCCC
Confidence 6899998766655 44554444455555555655 665
No 217
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=83.58 E-value=28 Score=37.49 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCC
Q 012112 96 QLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVN 175 (471)
Q Consensus 96 ~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvn 175 (471)
+.+.+..+.+.+. +.+-|-+|++... -.++.+..+++.+++.++ ..+++. +.+.+.++.--++|..
T Consensus 165 ~~i~~~A~~~~~~-----GADIIDIG~~st~-p~~~~v~~~V~~l~~~~~----~pISID----T~~~~v~eaAL~aGAd 230 (499)
T TIGR00284 165 DGIEGLAARMERD-----GADMVALGTGSFD-DDPDVVKEKVKTALDALD----SPVIAD----TPTLDELYEALKAGAS 230 (499)
T ss_pred HHHHHHHHHHHHC-----CCCEEEECCCcCC-CcHHHHHHHHHHHHhhCC----CcEEEe----CCCHHHHHHHHHcCCC
Confidence 5555555544332 3677889887542 255668888888876542 345544 6778888877788866
Q ss_pred EEEEccCCCC-HHHHHHcCC------------CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 176 RVSLGVQAFQ-DELLKSCGR------------AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 176 rvsiGvQS~~-d~~L~~l~R------------~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
-|. .+..++ ++++..+.+ ....+...+.++.++++|++.+-+|-++|.++ ..+.++|+.+..
T Consensus 231 iIN-sVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~---~~l~~sL~~l~~ 305 (499)
T TIGR00284 231 GVI-MPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSPPL---LGLLESIIRFRR 305 (499)
T ss_pred EEE-ECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCcch---HHHHHHHHHHHH
Confidence 442 222222 344332221 22347788999999999998899999999642 236666666653
No 218
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=83.48 E-value=8.8 Score=40.86 Aligned_cols=106 Identities=12% Similarity=0.269 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|++.+ |-.++.|..+.+++.++++.. +.++.+-+ +.+.-....++++
T Consensus 162 ~~y~~~~a~~l~~~--------Gad~I~IkD-taG~l~P~~v~~Lv~alk~~~----~~pi~~H~Hnt~GlA~An~laAi 228 (468)
T PRK12581 162 LNYYLSLVKELVEM--------GADSICIKD-MAGILTPKAAKELVSGIKAMT----NLPLIVHTHATSGISQMTYLAAV 228 (468)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEECC-CCCCcCHHHHHHHHHHHHhcc----CCeEEEEeCCCCccHHHHHHHHH
Confidence 44555566666532 268899974 788899999999999998743 34555555 3333345555555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
++|++.|...+-++ +.+.+....+..+..++..|++ ..+|+
T Consensus 229 -eAGad~vD~ai~g~--------g~gagN~~tE~lv~~L~~~g~~-tgiDl 269 (468)
T PRK12581 229 -EAGADRIDTALSPF--------SEGTSQPATESMYLALKEAGYD-ITLDE 269 (468)
T ss_pred -HcCCCEEEeecccc--------CCCcCChhHHHHHHHHHhcCCC-CCcCH
Confidence 78999998888754 4444444555666667777876 45553
No 219
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=81.91 E-value=30 Score=36.75 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=79.3
Q ss_pred eeEEEEcCC-CC----CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe----------cCCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TP----SLVPPRFVSSILDTLTDKFGLSLDAEISMEM----------DPGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tp----s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~----------~P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.+|=++|| |+ ++++++.. +.++.+++.. ++..+.+-+ .|+++-.+.++...++|++.|.+
T Consensus 40 v~~IE~~ggatf~~~~~f~~e~p~-e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~iri 115 (448)
T PRK12331 40 YHSLEMWGGATFDACLRFLNEDPW-ERLRKIRKAV---KKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRI 115 (448)
T ss_pred CCEEEecCCccchhhhccCCCCHH-HHHHHHHHhC---CCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEE
Confidence 555656655 33 23555443 3456666543 234555333 45667778889999999998888
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. +.++- ..+.++++.+++.|.. .+++....+ |--|.+-+.+..+.+.+++++.|.+-
T Consensus 116 f~-~lnd~-----------~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 116 FD-ALNDV-----------RNLETAVKATKKAGGHAQVAISYTTS-PVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred EE-ecCcH-----------HHHHHHHHHHHHcCCeEEEEEEeecC-CCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 65 33442 2367789999999975 133444555 78899999999999999999877654
No 220
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.77 E-value=30 Score=33.98 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=70.4
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCH---------HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCCCCHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQD---------ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPHQTPQM 231 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d---------~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPgqT~e~ 231 (471)
+.+.++.|.++|++-|.+|+=.-|+ .-+++++.+.+.+++.+.++.+++.+.+ +-+-||. --| .=.-.
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~-~Pivlm~Y~Np-i~~~G 110 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK-VPIVLMTYYNP-IFNYG 110 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC-CCEEEEEeccH-HHHhh
Confidence 5677788888999999999987765 3567888999999999999999988665 3333331 111 01123
Q ss_pred HHHHHHHHHhCCCCcEEEEeccccCCChhhhccc
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYT 265 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~ 265 (471)
+++-++.+.+.+++-+-+=.|-+++...+.+..+
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~ 144 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE 144 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH
Confidence 4445677888888888777776666555544433
No 221
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=81.74 E-value=31 Score=37.99 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=80.8
Q ss_pred eeEEEEcCC-CC----CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TP----SLVPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tp----s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.+|=+||| |+ ++++++. .+.++.+++.. ++..+..-++ |+++-++.++...++|++.+.+
T Consensus 35 v~~IE~~GGatfd~~~~f~~e~~-~e~l~~l~~~~---~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~iri 110 (582)
T TIGR01108 35 YWSLEVWGGATFDACIRFLNEDP-WERLRELKKAL---PNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRI 110 (582)
T ss_pred CCEEEecCCcccccccccCCCCH-HHHHHHHHHhC---CCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEE
Confidence 566666655 33 3355554 34456666543 3345655543 5666778889999999998877
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.. +.++ .+.+..+++.++++|.. +.+.+-+ +-|-.|.+-+.+.++.+.+.+++.|.+-
T Consensus 111 f~-~lnd-----------~~n~~~~i~~ak~~G~~-v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~ 169 (582)
T TIGR01108 111 FD-ALND-----------PRNLQAAIQAAKKHGAH-AQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK 169 (582)
T ss_pred EE-ecCc-----------HHHHHHHHHHHHHcCCE-EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 53 3343 24688899999999986 6654322 3577789999999999999999876543
No 222
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=81.58 E-value=38 Score=32.57 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=82.0
Q ss_pred cEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 150 AEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 150 ~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
.++.+.+ || ++.++.+.++|++.|++=+|+. .+..++++.+|+.|.. +..-+.+. |+..
T Consensus 71 ~DvHLMv~~P----~~~i~~~~~aGad~It~H~Ea~--------------~~~~~~l~~Ik~~g~~-~kaGlaln-P~Tp 130 (228)
T PRK08091 71 KDVHLMVRDQ----FEVAKACVAAGADIVTLQVEQT--------------HDLALTIEWLAKQKTT-VLIGLCLC-PETP 130 (228)
T ss_pred EEEEeccCCH----HHHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCC-ceEEEEEC-CCCC
Confidence 3555555 55 6789999999999999999974 2356788899999983 34555554 6766
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce-eccccccCCCcc
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH-YEISSYGEDGYE 307 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~~g~~ 307 (471)
.+.+..-+.. +|.|-+. +++||.. |+.-. +...+-...+++++.++||.- .|+ +|.-
T Consensus 131 ~~~i~~~l~~-----vD~VLiM--tV~PGfg-------GQ~f~---~~~l~KI~~lr~~~~~~~~~~~IeV-----DGGI 188 (228)
T PRK08091 131 ISLLEPYLDQ-----IDLIQIL--TLDPRTG-------TKAPS---DLILDRVIQVENRLGNRRVEKLISI-----DGSM 188 (228)
T ss_pred HHHHHHHHhh-----cCEEEEE--EECCCCC-------Ccccc---HHHHHHHHHHHHHHHhcCCCceEEE-----ECCC
Confidence 7766655543 5666554 4677743 22111 223444556667778888752 232 3444
Q ss_pred hhhhhhh-h-cCCCEEEEc
Q 012112 308 CKHNLTY-W-KNKPFYGFG 324 (471)
Q Consensus 308 ~~hn~~y-w-~~~~ylG~G 324 (471)
...|... . .+.|.+=.|
T Consensus 189 ~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 189 TLELASYLKQHQIDWVVSG 207 (228)
T ss_pred CHHHHHHHHHCCCCEEEEC
Confidence 4445432 2 356776666
No 223
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.41 E-value=31 Score=33.62 Aligned_cols=124 Identities=12% Similarity=0.073 Sum_probs=74.3
Q ss_pred CCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee------ecCCCCC---
Q 012112 158 PGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL------ISSLPHQ--- 227 (471)
Q Consensus 158 P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl------I~GlPgq--- 227 (471)
|..++ ++.++..+++|++.|.+.+-..++... .-..+.+++.+..+.++++|+.-.++.+ -++-|..
T Consensus 13 ~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r 89 (284)
T PRK13210 13 PKHLSWEERLVFAKELGFDFVEMSVDESDERLA---RLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATR 89 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEecCCcccccc---cccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHH
Confidence 34444 689999999999999997654322110 1123556777778889999998322211 1222332
Q ss_pred --CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 228 --TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 228 --T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.+.+++.++.+..++.++|.+... +..... . .....+...+.+..+.+..++.|..
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~-----~~~~~~---~--~~~~~~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGY-----DVYYEE---K--SEETRQRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCc-----cccccc---c--cHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 4566788899999999999875321 111100 0 0011234455677778888888864
No 224
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=80.19 E-value=36 Score=37.54 Aligned_cols=101 Identities=10% Similarity=0.167 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|+|.+ |-.++.|..+.+++.+|++.++ .+|.+-+| .+.-....++++
T Consensus 153 ~e~~~~~ak~l~~~--------Gad~I~IkD-taG~l~P~~v~~lv~alk~~~~----ipi~~H~Hnt~Gla~an~laAi 219 (596)
T PRK14042 153 LDNFLELGKKLAEM--------GCDSIAIKD-MAGLLTPTVTVELYAGLKQATG----LPVHLHSHSTSGLASICHYEAV 219 (596)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEeCC-cccCCCHHHHHHHHHHHHhhcC----CEEEEEeCCCCCcHHHHHHHHH
Confidence 34555566666543 267899964 7788999999999999998864 35555553 333344555554
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-++ +...+.-.....+..++..|++
T Consensus 220 -eaGad~iD~ai~gl--------Gg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 220 -LAGCNHIDTAISSF--------SGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred -HhCCCEEEeccccc--------cCCCCcHhHHHHHHHHHhcCCC
Confidence 78999998888775 4444455556666667777776
No 225
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=80.09 E-value=10 Score=33.07 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=59.0
Q ss_pred HHHHCCCCEEEEccCCCCHHHHHHcCC------------CCCHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHHHHH
Q 012112 168 ELMDLGVNRVSLGVQAFQDELLKSCGR------------AHGLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQMWEE 234 (471)
Q Consensus 168 ~l~~~GvnrvsiGvQS~~d~~L~~l~R------------~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~~~~ 234 (471)
.|+.+|+.=+.+|++--.+++.+...+ .++...+.+.++.++++|+.. +=+|+|= +.--.+++.+
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~--v~vivGG~~~i~~~d~~~ 99 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD--ILLYVGGNLVVGKQDFED 99 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC--CeEEEECCCCCChhhhHH
Confidence 445566666666666666665554322 356788899999999999864 4456653 3345678888
Q ss_pred HHHHHHhCCCCcEEEEeccccCCChhhh
Q 012112 235 SLRRTVGAQPKHVSVYDLQVEQGTKFGI 262 (471)
Q Consensus 235 ~l~~~~~l~p~his~y~l~~~pgT~l~~ 262 (471)
+.+.+.+++++.+ |. |||++..
T Consensus 100 ~~~~L~~~Gv~~v--f~----pgt~~~~ 121 (128)
T cd02072 100 VEKRFKEMGFDRV--FA----PGTPPEE 121 (128)
T ss_pred HHHHHHHcCCCEE--EC----cCCCHHH
Confidence 8888999998755 43 7776543
No 226
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=79.94 E-value=22 Score=38.22 Aligned_cols=125 Identities=8% Similarity=0.043 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.|=. |.|.. ++.+.+.+ +.+.+.. ...++..-++ +..+ +..++.++.++..+|.+-+=+-+-...+.+
T Consensus 37 V~~IEv--G~p~~-s~~d~e~v-~~i~~~~---~~~~i~al~r~~~~di-d~a~~al~~~~~~~v~i~~~~S~~h~~~~l 108 (494)
T TIGR00973 37 VDIIEA--GFPVS-SPGDFEAV-QRIARTV---KNPRVCGLARCVEKDI-DAAAEALKPAEKFRIHTFIATSPIHLEHKL 108 (494)
T ss_pred CCEEEE--ECCCC-CHHHHHHH-HHHHHhC---CCCEEEEEcCCCHHhH-HHHHHhccccCCCEEEEEEccCHHHHHHHh
Confidence 555544 46764 56665554 5554432 2345665543 2222 233444556688999998877777777788
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 193 GRAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 193 ~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
++.. ..+.+.++++.+++.|.. +.++...+.. -+++.+.+.++.+.+.+++.|.+
T Consensus 109 ~~s~~e~l~~~~~~v~~a~~~g~~-v~f~~Ed~~r-~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 109 KMTRDEVLERAVGMVKYAKNFTDD-VEFSCEDAGR-TEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCe-EEEEcCCCCC-CCHHHHHHHHHHHHHcCCCEEEe
Confidence 7643 345667889999999986 7777766553 35778888889999999987654
No 227
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=79.58 E-value=15 Score=35.94 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|++.+ |-..+.|.++.++++.+++.++- .+..+.+-+ +.+.-....+..+
T Consensus 142 ~~~~~~~~~~~~~~--------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~-~~i~l~~H~Hn~~GlA~An~laAi 211 (268)
T cd07940 142 LDFLIEVVEAAIEA--------GATTINIPD-TVGYLTPEEFGELIKKLKENVPN-IKVPISVHCHNDLGLAVANSLAAV 211 (268)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEECC-CCCCCCHHHHHHHHHHHHHhCCC-CceeEEEEecCCcchHHHHHHHHH
Confidence 45666666666543 267888864 77788999999999999987741 013344444 3433355666666
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
++|+++|.-.+-. ||+....-..+..+..++..|
T Consensus 212 -~aG~~~iD~s~~G--------lG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 212 -EAGARQVECTING--------IGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred -HhCCCEEEEEeec--------cccccccccHHHHHHHHHhcc
Confidence 5799998766555 344443334444555555554
No 228
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=79.32 E-value=55 Score=36.13 Aligned_cols=100 Identities=10% Similarity=0.194 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~ 170 (471)
.|+-.+.+++... +++.|++. +|-.++.|.++.+++..+++.+++ .|.+.+ +.+.-....++++
T Consensus 154 ~~~~~~a~~l~~~--------Gad~I~i~-Dt~G~~~P~~~~~lv~~lk~~~~~----pi~~H~Hnt~Gla~An~laAv- 219 (592)
T PRK09282 154 EKYVELAKELEEM--------GCDSICIK-DMAGLLTPYAAYELVKALKEEVDL----PVQLHSHCTSGLAPMTYLKAV- 219 (592)
T ss_pred HHHHHHHHHHHHc--------CCCEEEEC-CcCCCcCHHHHHHHHHHHHHhCCC----eEEEEEcCCCCcHHHHHHHHH-
Confidence 4445556666432 26788886 478889999999999999998752 355555 3333345555555
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-.+ +++.+.......+..++..|++
T Consensus 220 ~aGad~vD~ai~g~--------g~~agn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 220 EAGVDIIDTAISPL--------AFGTSQPPTESMVAALKGTPYD 255 (592)
T ss_pred HhCCCEEEeecccc--------CCCcCCHhHHHHHHHHHhCCCC
Confidence 78999998888754 4444455555566666666665
No 229
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=79.32 E-value=21 Score=34.35 Aligned_cols=146 Identities=14% Similarity=0.231 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 136 ILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 136 ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+++.+++...+ ..++.+.+ || ...++.+.++|++.|++=+|+..+ +..+.++.+|++|.+
T Consensus 50 ~i~~ir~~t~~--~~DvHLMv~~P----~~~i~~~~~aGad~it~H~Ea~~~-------------~~~~~i~~Ik~~G~k 110 (229)
T PRK09722 50 FVSQVKKLASK--PLDVHLMVTDP----QDYIDQLADAGADFITLHPETING-------------QAFRLIDEIRRAGMK 110 (229)
T ss_pred HHHHHHhcCCC--CeEEEEEecCH----HHHHHHHHHcCCCEEEECccCCcc-------------hHHHHHHHHHHcCCC
Confidence 45556654332 24566665 55 678999999999999999997532 244678899999987
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.+-+= |+...+.+..-|.. +|.|-+. +++||-. |+.- .....+-...+++++.++|+.
T Consensus 111 -aGlaln---P~T~~~~l~~~l~~-----vD~VLvM--sV~PGf~-------GQ~f---i~~~l~KI~~lr~~~~~~~~~ 169 (229)
T PRK09722 111 -VGLVLN---PETPVESIKYYIHL-----LDKITVM--TVDPGFA-------GQPF---IPEMLDKIAELKALRERNGLE 169 (229)
T ss_pred -EEEEeC---CCCCHHHHHHHHHh-----cCEEEEE--EEcCCCc-------chhc---cHHHHHHHHHHHHHHHhcCCC
Confidence 444332 56556665555443 4666554 4567753 1111 123344455666777788875
Q ss_pred e-eccccccCCCcchhhhhhh-h-cCCCEEEEccC
Q 012112 295 H-YEISSYGEDGYECKHNLTY-W-KNKPFYGFGLG 326 (471)
Q Consensus 295 ~-yeis~fa~~g~~~~hn~~y-w-~~~~ylG~G~g 326 (471)
. .|+ +|--...|..- . .+.|.+=.|.+
T Consensus 170 ~~IeV-----DGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 170 YLIEV-----DGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred eEEEE-----ECCCCHHHHHHHHHcCCCEEEEChH
Confidence 2 232 34333344422 2 34577666643
No 230
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=79.20 E-value=13 Score=37.76 Aligned_cols=88 Identities=11% Similarity=0.214 Sum_probs=59.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.||+-+ |...+.|+++.+++..+++.++ ++.++.+-++ .+.-....+..+ ++|+++|.-.+-. |
T Consensus 157 a~~i~i~D-T~G~~~P~~v~~~v~~l~~~l~--~~i~ig~H~HnnlGla~ANslaAi-~aGa~~iD~Sl~G--------~ 224 (333)
T TIGR03217 157 ADCVYIVD-SAGAMLPDDVRDRVRALKAVLK--PETQVGFHAHHNLSLAVANSIAAI-EAGATRIDASLRG--------L 224 (333)
T ss_pred CCEEEEcc-CCCCCCHHHHHHHHHHHHHhCC--CCceEEEEeCCCCchHHHHHHHHH-HhCCCEEEeeccc--------c
Confidence 67888874 7778899999999999998764 3455666653 322234555555 6899998766655 5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 012112 193 GRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
|++......+..+..++..|+.
T Consensus 225 G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 225 GAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred cccccCccHHHHHHHHHhcCCC
Confidence 6665555555556666677775
No 231
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=79.10 E-value=22 Score=35.50 Aligned_cols=115 Identities=20% Similarity=0.221 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHH
Q 012112 90 RVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL 169 (471)
Q Consensus 90 ~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l 169 (471)
.++.+.+-+++|++.-... .....-.|-++|+.|. ++|...+.|-.+.+.+.. ..+.+++-+...++-.|.++.+
T Consensus 111 ~i~~~ae~~v~ei~~Gi~g--T~ikAGiIk~~~~~~~-iTp~Eek~lrAaA~A~~~--Tg~Pi~tHt~~gt~g~eq~~il 185 (316)
T COG1735 111 PIEELAEFVVKEIEEGIAG--TGIKAGIIKEAGGSPA-ITPLEEKSLRAAARAHKE--TGAPISTHTPAGTMGLEQLRIL 185 (316)
T ss_pred CHHHHHHHHHHHHHhcccC--CccccceeeeccCccc-CCHHHHHHHHHHHHHhhh--cCCCeEEeccchhhhHHHHHHH
Confidence 3678888999999865332 2334566778899998 477655555444444322 3567888888888899999999
Q ss_pred HHCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 170 MDLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 170 ~~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
.+-|++ +|+||= |++.++....+ +.++..|.- +..|.| |.
T Consensus 186 ~~egvdl~~v~igH----------~d~n~dd~~y~---~~l~~~Ga~-l~fD~i-G~ 227 (316)
T COG1735 186 AEEGVDLRKVSIGH----------MDPNTDDVYYQ---KKLADRGAF-LEFDRI-GK 227 (316)
T ss_pred HHcCCChhHeeEec----------cCCCCChHHHH---HHHHhcCce-EEeccc-Cc
Confidence 999986 888884 45555554444 344555654 677765 43
No 232
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.95 E-value=40 Score=32.96 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=72.0
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeEe-ee------ecCCCCC-----C
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGLKEVYEAIEIVKLCGVENWSL-DL------ISSLPHQ-----T 228 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~~-Dl------I~GlPgq-----T 228 (471)
-.+.++.++++|+.-|.+.+...+... .. ..+.+++.+..+.++++|+. |+. -. -++.|.+ .
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~gl~-i~~~~~~~~~~~~~~~~~~~~r~~~ 97 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERL----ARLDWSREQRLALVNALVETGFR-VNSMCLSAHRRFPLGSEDDAVRAQA 97 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccch----hccCCCHHHHHHHHHHHHHcCCc-eeEEecccccccCCCCCCHHHHHHH
Confidence 368999999999999999887654321 11 23567777778888899997 432 11 1122221 2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eec
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYE 297 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~ye 297 (471)
.+.+++.++.+.+++.++|.+... +... +.-.....+...+.+..+.+..++.|-. .+|
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~-----~~~~-----~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE 157 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGY-----DVYY-----EQANNETRRRFIDGLKESVELASRASVTLAFE 157 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCc-----cccc-----cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 345778889999999998875321 1100 0000001123345566677777777753 344
No 233
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=78.67 E-value=12 Score=35.84 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=99.3
Q ss_pred HHHHHHHHhccCCCCCCCCeeEEEEcCCCC--C-CCCHHHHHHHHHHHHHH-cCCCCCcEEEEEe-cCCCCCHHHHHHHH
Q 012112 96 QLLCREIIATKPGHKTSPPLETVFFGGGTP--S-LVPPRFVSSILDTLTDK-FGLSLDAEISMEM-DPGTFDARKMEELM 170 (471)
Q Consensus 96 ~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTp--s-~l~~~~l~~ll~~l~~~-~~l~~~~eitiE~-~P~~l~~e~l~~l~ 170 (471)
..+.+|++...+.. ...=++-+=+|.+ + .+.++ +++.+++. ..+. .++.+.+ || +..++.+.
T Consensus 12 ~~l~~~i~~l~~~g---~~~lH~DvmDG~Fvpn~tfg~~----~i~~i~~~~~~~~--~dvHLMv~~p----~~~i~~~~ 78 (220)
T PRK08883 12 ARLGEDVEKVLAAG---ADVVHFDVMDNHYVPNLTFGAP----ICKALRDYGITAP--IDVHLMVKPV----DRIIPDFA 78 (220)
T ss_pred HHHHHHHHHHHHcC---CCEEEEecccCcccCccccCHH----HHHHHHHhCCCCC--EEEEeccCCH----HHHHHHHH
Confidence 34566666554321 1122233345553 3 23444 44555554 2322 3455554 44 67899999
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
++|++.|++=+|+. .+..+.++.+|+.|.+ ..+-+= |+...+.+..-++ .+|.|-+.
T Consensus 79 ~~gad~i~~H~Ea~--------------~~~~~~l~~ik~~g~k-~Glaln---P~Tp~~~i~~~l~-----~~D~vlvM 135 (220)
T PRK08883 79 KAGASMITFHVEAS--------------EHVDRTLQLIKEHGCQ-AGVVLN---PATPLHHLEYIMD-----KVDLILLM 135 (220)
T ss_pred HhCCCEEEEcccCc--------------ccHHHHHHHHHHcCCc-EEEEeC---CCCCHHHHHHHHH-----hCCeEEEE
Confidence 99999999999973 2366788899999987 444332 5555555554443 34666554
Q ss_pred eccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eeccccccCCCcchhhhhhh-h-cCCCEEEEcc
Q 012112 251 DLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYGEDGYECKHNLTY-W-KNKPFYGFGL 325 (471)
Q Consensus 251 ~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~~g~~~~hn~~y-w-~~~~ylG~G~ 325 (471)
+++||+.-.+. . ....+....+++.+.++|+. ..++ .|--...|... + .+.|.+-.|.
T Consensus 136 --tV~PGfgGq~f-------i---~~~lekI~~l~~~~~~~~~~~~I~v-----dGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 136 --SVNPGFGGQSF-------I---PHTLDKLRAVRKMIDESGRDIRLEI-----DGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred --EecCCCCCcee-------c---HhHHHHHHHHHHHHHhcCCCeeEEE-----ECCCCHHHHHHHHHcCCCEEEEeH
Confidence 67888752221 1 22334566667777777874 2222 23333444432 3 3568777773
No 234
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=77.87 E-value=75 Score=35.09 Aligned_cols=101 Identities=8% Similarity=0.183 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|+|-+ |-.++.|..+.+++..+++.++ ..|.+.+ +.+.-....+.++
T Consensus 154 ~~~~~~~a~~l~~~--------Gad~i~i~D-t~G~l~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~GlA~An~laAi 220 (593)
T PRK14040 154 LQTWVDLAKQLEDM--------GVDSLCIKD-MAGLLKPYAAYELVSRIKKRVD----VPLHLHCHATTGLSTATLLKAI 220 (593)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEECC-CCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCchHHHHHHHHH
Confidence 34555566666533 267888864 7788999999999999998874 3455555 3433355556555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-++. .+.........+..++..|++
T Consensus 221 -eAGa~~vD~ai~glG--------~~~Gn~~le~vv~~L~~~~~~ 256 (593)
T PRK14040 221 -EAGIDGVDTAISSMS--------MTYGHSATETLVATLEGTERD 256 (593)
T ss_pred -HcCCCEEEecccccc--------ccccchhHHHHHHHHHhcCCC
Confidence 789999988887754 444445555666666666665
No 235
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=77.34 E-value=17 Score=34.74 Aligned_cols=98 Identities=14% Similarity=0.257 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~ 170 (471)
.++..+.+.+... +++.|++.+ |...+.|.++.+++..+++.++- .++.+-+ +.+.-....+..+
T Consensus 137 ~~~~~~~~~~~~~--------g~~~i~l~D-t~G~~~P~~v~~lv~~~~~~~~~---~~l~~H~Hnd~Gla~An~laA~- 203 (237)
T PF00682_consen 137 EELLELAEALAEA--------GADIIYLAD-TVGIMTPEDVAELVRALREALPD---IPLGFHAHNDLGLAVANALAAL- 203 (237)
T ss_dssp HHHHHHHHHHHHH--------T-SEEEEEE-TTS-S-HHHHHHHHHHHHHHSTT---SEEEEEEBBTTS-HHHHHHHHH-
T ss_pred HHHHHHHHHHHHc--------CCeEEEeeC-ccCCcCHHHHHHHHHHHHHhccC---CeEEEEecCCccchhHHHHHHH-
Confidence 4455555555443 267788874 77888999999999999998752 4566655 4443355666665
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
++|+++|...+-. ||++......++.+..++..
T Consensus 204 ~aGa~~id~t~~G--------lG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 204 EAGADRIDGTLGG--------LGERAGNAPLEELVAALERM 236 (237)
T ss_dssp HTT-SEEEEBGGG--------GSSTTSB-BHHHHHHHHHHT
T ss_pred HcCCCEEEccCcc--------CCCCCCCccHHHHHHHHhhc
Confidence 4899999887765 45555444444445444443
No 236
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=77.11 E-value=37 Score=33.13 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=64.4
Q ss_pred eeEEEEcCCCC--C--CCCH-HHHH---HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCC
Q 012112 115 LETVFFGGGTP--S--LVPP-RFVS---SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGTp--s--~l~~-~~l~---~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~ 185 (471)
.+-|-+|++.. . ..++ ++++ .+++.+++.+ +..+++. +.+.+.++.--++|..-| |+.-...+
T Consensus 38 AdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSID----T~~~~v~~aaL~~g~~iINdis~~~~~ 109 (258)
T cd00423 38 ADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVD----TFNAEVAEAALKAGADIINDVSGGRGD 109 (258)
T ss_pred CCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEe----CCcHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 56677887653 1 1122 3444 4455554432 2345544 566777776667774432 33333334
Q ss_pred HHHHHHcC-----------CC------------CC----HHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHH---H
Q 012112 186 DELLKSCG-----------RA------------HG----LKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMW---E 233 (471)
Q Consensus 186 d~~L~~l~-----------R~------------~t----~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~---~ 233 (471)
+++++.+. ++ .. .+.+.+.++.+.++|+ +.+-+|-.+|++. +.+.- .
T Consensus 110 ~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~k-~~~~~~~~l 188 (258)
T cd00423 110 PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFGK-TEEHNLELL 188 (258)
T ss_pred hHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccC-CHHHHHHHH
Confidence 55544221 11 01 3556677777889995 4689999999877 44433 3
Q ss_pred HHHHHHHhC
Q 012112 234 ESLRRTVGA 242 (471)
Q Consensus 234 ~~l~~~~~l 242 (471)
+.++.+.++
T Consensus 189 ~~i~~~~~~ 197 (258)
T cd00423 189 RRLDAFREL 197 (258)
T ss_pred HHHHHHHhc
Confidence 344444444
No 237
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=77.10 E-value=9.1 Score=33.79 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=44.2
Q ss_pred HhccccCCCCHhhHHHHhCCC-------------hHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccc
Q 012112 377 LSFRTARGVDLKSFGETFGCS-------------LVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNR 443 (471)
Q Consensus 377 ~~Lr~~~gi~~~~~~~~fg~~-------------~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (471)
..|-+..++-...|...||.. =...+...|++|++.||++...++ .|
T Consensus 59 RklY~~g~~GV~~lr~~YGg~k~~G~~p~h~~~asg~iiR~~LqqLE~~glv~k~~~~--------------------GR 118 (139)
T PF01090_consen 59 RKLYIRGPVGVGRLRKIYGGRKRRGVRPSHFVKASGSIIRKILQQLEKAGLVEKDPKG--------------------GR 118 (139)
T ss_dssp HHHHHCTSB-HHHHHHHH--EEEETSSCCEE--CHHHHHHHHHHHHHHTTSEEEETTT--------------------EE
T ss_pred HHHHHhcCcchHHHHHHhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHCCCEEecCCC--------------------CC
Confidence 333345567777777766542 123467789999999999976322 22
Q ss_pred cceeeecCchhhchHHHHHHHHHh
Q 012112 444 LAYFRLSDPEGFLLSNELISHAFG 467 (471)
Q Consensus 444 ~~~~~lt~~~G~~~~n~i~~~~~~ 467 (471)
+|| ++|.-+.|.|+.+++.
T Consensus 119 ----~lT-~~G~~~lD~iA~~v~~ 137 (139)
T PF01090_consen 119 ----RLT-PKGQRDLDRIAGQVAK 137 (139)
T ss_dssp ----EE--HHHHHHHHHHHHHHHH
T ss_pred ----EEC-HHHHHHHHHHHHHHHH
Confidence 686 9999999999988765
No 238
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.68 E-value=16 Score=37.24 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=58.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.||+.+ |...+.|+++.+++..+++.++ ++.++.+-++ .+.-....+..+ ++|+++|.-.+.- |
T Consensus 158 a~~i~i~D-T~G~~~P~~v~~~v~~l~~~l~--~~i~ig~H~HnnlGla~ANslaAi-~aGa~~iD~Sl~G--------l 225 (337)
T PRK08195 158 AQCVYVVD-SAGALLPEDVRDRVRALRAALK--PDTQVGFHGHNNLGLGVANSLAAV-EAGATRIDGSLAG--------L 225 (337)
T ss_pred CCEEEeCC-CCCCCCHHHHHHHHHHHHHhcC--CCCeEEEEeCCCcchHHHHHHHHH-HhCCCEEEecChh--------h
Confidence 67888874 7778899999999999998764 3455666653 332244555555 6899988765544 5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 012112 193 GRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
|++......+..+..+...|++
T Consensus 226 G~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 226 GAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred cccccCccHHHHHHHHHhcCCC
Confidence 6655444455555556666765
No 239
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=76.65 E-value=66 Score=35.43 Aligned_cols=100 Identities=10% Similarity=0.306 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~ 170 (471)
.|+..+.+++... +++.|++.+ |-.++.|..+.+++..|++.+++ .+.+.+ +.+.-....+.++
T Consensus 149 ~~~~~~~~~~~~~--------Gad~I~i~D-t~G~~~P~~v~~lv~~lk~~~~~----pi~~H~Hnt~Gla~An~laAv- 214 (582)
T TIGR01108 149 ETYLDLAEELLEM--------GVDSICIKD-MAGILTPKAAYELVSALKKRFGL----PVHLHSHATTGMAEMALLKAI- 214 (582)
T ss_pred HHHHHHHHHHHHc--------CCCEEEECC-CCCCcCHHHHHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHH-
Confidence 3455556666543 257788864 77889999999999999998753 345555 3333345556555
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-.+.. +.........+..++..|++
T Consensus 215 eaGa~~vd~ai~GlG~--------~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 215 EAGADGIDTAISSMSG--------GTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred HhCCCEEEeccccccc--------cccChhHHHHHHHHHhcCCC
Confidence 7799999888777544 44444555556666667776
No 240
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=76.40 E-value=27 Score=34.77 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..++..+.+++... +++.|++.+ |-.++.|.++.++++.+++.++ +.++.+.++ .+.-....+..+
T Consensus 154 ~~~~~~~~~~~~~~--------G~d~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~i~~H~Hn~~Gla~AN~laA~ 221 (287)
T PRK05692 154 PEAVADVAERLFAL--------GCYEISLGD-TIGVGTPGQVRAVLEAVLAEFP---AERLAGHFHDTYGQALANIYASL 221 (287)
T ss_pred HHHHHHHHHHHHHc--------CCcEEEecc-ccCccCHHHHHHHHHHHHHhCC---CCeEEEEecCCCCcHHHHHHHHH
Confidence 34555555555432 267788864 6777899999999999998764 234555553 333355666665
Q ss_pred HHCCCCEEEEccCCC
Q 012112 170 MDLGVNRVSLGVQAF 184 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~ 184 (471)
++|+++|.-.+-.+
T Consensus 222 -~aG~~~id~s~~Gl 235 (287)
T PRK05692 222 -EEGITVFDASVGGL 235 (287)
T ss_pred -HhCCCEEEEEcccc
Confidence 67999998777653
No 241
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=76.36 E-value=11 Score=29.57 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=33.7
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
..|....++...-+.+.. .+...++.|++.|++...++ .+++| ++|..+.+.+
T Consensus 17 ~~~~~~t~i~~~~~L~~~-~~~~yL~~L~~~gLI~~~~~-------------------------~Y~lT-ekG~~~l~~l 69 (77)
T PF14947_consen 17 KGGAKKTEIMYKANLNYS-TLKKYLKELEEKGLIKKKDG-------------------------KYRLT-EKGKEFLEEL 69 (77)
T ss_dssp TT-B-HHHHHTTST--HH-HHHHHHHHHHHTTSEEEETT-------------------------EEEE--HHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHH-HHHHHHHHHHHCcCeeCCCC-------------------------EEEEC-ccHHHHHHHH
Confidence 345555555554444432 45678999999999964321 47896 9999999876
No 242
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=76.30 E-value=31 Score=37.10 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=74.1
Q ss_pred eeEEEEcCC-CCCC----CCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TPSL----VPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tps~----l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.+|=.||| |+-. ++.+..++ ++.+++.. ++..+.+-++ |+++-+..++...+.|++.+.|
T Consensus 41 ~~siE~~GGatfd~~~rfl~Edpwer-lr~lr~~~---~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RI 116 (499)
T PRK12330 41 YWSVECWGGATFDACIRFLNEDPWER-LRTFRKLM---PNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRV 116 (499)
T ss_pred CCEEEecCCcchhhhhcccCCCHHHH-HHHHHHhC---CCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEE
Confidence 455555554 4432 34444333 45666554 3345666554 5556677888888999998777
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
..-. || ...+..+++.++++|.. +...+-| +-|-.|.+.+.+..+.+.+++++.|++-
T Consensus 117 fd~l-nd-----------v~nl~~ai~~vk~ag~~-~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 117 FDAL-ND-----------PRNLEHAMKAVKKVGKH-AQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred EecC-Ch-----------HHHHHHHHHHHHHhCCe-EEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4333 33 25667778888888774 4233222 2367788888888888888888876543
No 243
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=75.28 E-value=3.1 Score=42.39 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=47.6
Q ss_pred HHHHHHHHHC-CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe--------eeecCCCC--CCHHH
Q 012112 163 ARKMEELMDL-GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL--------DLISSLPH--QTPQM 231 (471)
Q Consensus 163 ~e~l~~l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~--------DlI~GlPg--qT~e~ 231 (471)
+..|..+++. |++.|-..+-.... +..-+.+++.+..+.+.++|+. +++ |+.+|.|| +-.|.
T Consensus 14 pv~l~~irQ~~Gv~giV~al~~~p~------g~~W~~e~i~~~k~~ie~~GL~-~~vIEsvpv~e~IklG~~~RD~~Ien 86 (351)
T PF03786_consen 14 PVTLWDIRQQPGVTGIVTALHDIPN------GEVWDYEEIRALKERIEAAGLT-LSVIESVPVHEDIKLGLPGRDEEIEN 86 (351)
T ss_dssp SS-HHHHCTSTTEEEEEE--SSS-T------TS---HHHHHHHHHHHHCTT-E-EEEEES----HHHHCT-TTHHHHHHH
T ss_pred cchHHHHHHhcCCCCeeeCCCCCCC------CCCCCHHHHHHHHHHHHHcCCe-EEEEecCChHHHHhcCCCcHHHHHHH
Confidence 3445556665 77766665544333 5566777777777788888775 333 66777777 34567
Q ss_pred HHHHHHHHHhCCCCcEEEEecccc
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQVE 255 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~~ 255 (471)
+.++|+.+-+++++ +-+|.+++.
T Consensus 87 y~~~Irnlg~~GI~-vvcYNFMPv 109 (351)
T PF03786_consen 87 YKQTIRNLGKAGIK-VVCYNFMPV 109 (351)
T ss_dssp HHHHHHHHHHTT---EEEEE--SS
T ss_pred HHHHHHHHHhcCCC-EEEEEeeee
Confidence 77888888888876 446777654
No 244
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=75.15 E-value=23 Score=34.47 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=39.0
Q ss_pred eEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCC--CC--CH-------HHHHHHHHCCCCEEEEccCCC
Q 012112 116 ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG--TF--DA-------RKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 116 ~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~--~l--~~-------e~l~~l~~~GvnrvsiGvQS~ 184 (471)
..+..||=|||. ..+ +.+++... .++.+-++|. ++ ++ +.++.++++|++-|-+|+-+-
T Consensus 29 ~~L~~GGlTPS~---g~i----~~~~~~~~----ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~ 97 (248)
T PRK11572 29 AAPKEGGLTPSL---GVL----KSVRERVT----IPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDV 97 (248)
T ss_pred cCcCCCCcCCCH---HHH----HHHHHhcC----CCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC
Confidence 345678888986 333 33444333 3567777776 33 33 556778889999999999875
Q ss_pred C
Q 012112 185 Q 185 (471)
Q Consensus 185 ~ 185 (471)
+
T Consensus 98 d 98 (248)
T PRK11572 98 D 98 (248)
T ss_pred C
Confidence 4
No 245
>PRK07329 hypothetical protein; Provisional
Probab=75.00 E-value=25 Score=34.00 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHhc-c-CCCCCCCCeeE--EEEcCCCCCCCC-HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--
Q 012112 89 PRVSNYIQLLCREIIAT-K-PGHKTSPPLET--VFFGGGTPSLVP-PRFVSSILDTLTDKFGLSLDAEISMEMDPGTF-- 161 (471)
Q Consensus 89 ~~~~~yv~~l~~Ei~~~-~-~~~~~~~~v~~--i~fGGGTps~l~-~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l-- 161 (471)
.....|.+.+++-++.. . ...+ .++. -+++-+....-+ .+.++++++++++. .+.+|+|-..+
T Consensus 121 ~~~~~Y~~~~~~~v~~~~~fdvlg---HpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~lEiNt~~~~~ 190 (246)
T PRK07329 121 ELLQEYFEKMEEAIGRVHDADVLA---HFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDN-------DLAFELNTKSMYL 190 (246)
T ss_pred HHHHHHHHHHHHHHHccCCCCEee---eccHHHHhCCCCCcChHHHHHHHHHHHHHHHHc-------CCeEEEECccccc
Confidence 34577888887766632 1 1111 1221 123212111100 34566777777664 35666665433
Q ss_pred ------CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeE
Q 012112 162 ------DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWS 217 (471)
Q Consensus 162 ------~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~ 217 (471)
..+.++..++.|+..|.+|-.+=.++.+.. .+.++++.++++||+.+.
T Consensus 191 ~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~--------~~~~a~~~l~~~g~~~~~ 244 (246)
T PRK07329 191 YGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRY--------NFDDAQKLLKEHGIKEIA 244 (246)
T ss_pred CCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHH--------HHHHHHHHHHHcCCceEE
Confidence 156799999999988999999866655422 466788999999997543
No 246
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=74.91 E-value=6.3 Score=40.08 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC--------------CCC
Q 012112 161 FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS--------------LPH 226 (471)
Q Consensus 161 l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G--------------lPg 226 (471)
...+.++.||+.|+|.|.+-|=. +|.. +-..+.+++.+..+.++++|++ |-+||-|. -.+
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRvwv-~P~~----~g~~~~~~~~~~akrak~~Gm~-vlldfHYSD~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRVWV-NPYD----GGYNDLEDVIALAKRAKAAGMK-VLLDFHYSDFWADPGKQNKPAAWAN 98 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-S-S-TT----TTTTSHHHHHHHHHHHHHTT-E-EEEEE-SSSS--BTTB-B--TTCTS
T ss_pred CCCCHHHHHHhcCCCeEEEEecc-CCcc----cccCCHHHHHHHHHHHHHCCCe-EEEeecccCCCCCCCCCCCCccCCC
Confidence 45789999999999977766622 2222 4456899999999999999998 99999983 223
Q ss_pred CCHHHHHH--------HHHHHHhCC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 227 QTPQMWEE--------SLRRTVGAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 227 qT~e~~~~--------~l~~~~~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
.+.+++.+ .|+.+.+.+ |+.|++=. .+-.|- +...|+ ...-+..+.+...+.+..++.+-..-
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGN-Ein~Gm----lwp~g~--~~~~~~~a~ll~ag~~AVr~~~p~~k 171 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGN-EINNGM----LWPDGK--PSNWDNLAKLLNAGIKAVREVDPNIK 171 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESS-SGGGES----TBTTTC--TT-HHHHHHHHHHHHHHHHTHSSTSE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCc-cccccc----cCcCCC--ccCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 45555553 344445544 55555433 111110 111122 34556677788888888877554443
Q ss_pred ccccccCCCc
Q 012112 297 EISSYGEDGY 306 (471)
Q Consensus 297 eis~fa~~g~ 306 (471)
-+-+.+.++.
T Consensus 172 V~lH~~~~~~ 181 (332)
T PF07745_consen 172 VMLHLANGGD 181 (332)
T ss_dssp EEEEES-TTS
T ss_pred EEEEECCCCc
Confidence 4555665553
No 247
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=74.51 E-value=82 Score=30.78 Aligned_cols=117 Identities=22% Similarity=0.299 Sum_probs=64.0
Q ss_pred eeEEEEcCC-C-CC---CCCHHHHHHH---HHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCC
Q 012112 115 LETVFFGGG-T-PS---LVPPRFVSSI---LDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGG-T-ps---~l~~~~l~~l---l~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~ 185 (471)
.+-|-+||- | |. +-..++++++ ++.|++.+ +..+++. +.+.+.++.--++|+.-| |+.-...+
T Consensus 38 AdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSID----T~~~~v~e~al~~G~~iINdisg~~~~ 109 (257)
T cd00739 38 ADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----DVLISVD----TFRAEVARAALEAGADIINDVSGGSDD 109 (257)
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEe----CCCHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 466778752 2 22 2223455565 45555443 2345554 667777777777785544 24444444
Q ss_pred HHHHHHcCC-------------CCC--------------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHHHH
Q 012112 186 DELLKSCGR-------------AHG--------------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEESL 236 (471)
Q Consensus 186 d~~L~~l~R-------------~~t--------------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~~l 236 (471)
+++++.+.+ +.+ .+...+.++.++++|+. .|-+|-.+|+ +.|.+.-.+.|
T Consensus 110 ~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf-~ks~~~~~~~l 188 (257)
T cd00739 110 PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGF-GKTPEHNLELL 188 (257)
T ss_pred hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCc-ccCHHHHHHHH
Confidence 565543221 111 12255666778888985 6889998886 55544444444
Q ss_pred HHHH
Q 012112 237 RRTV 240 (471)
Q Consensus 237 ~~~~ 240 (471)
+.+.
T Consensus 189 ~~i~ 192 (257)
T cd00739 189 RRLD 192 (257)
T ss_pred HHHH
Confidence 4443
No 248
>PRK11050 manganese transport regulator MntR; Provisional
Probab=74.03 E-value=23 Score=31.66 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=49.6
Q ss_pred hhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccccee
Q 012112 368 KDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYF 447 (471)
Q Consensus 368 ~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (471)
.+...+.|...+....++...++.+.++.+-. .+...++.|++.|++...... .+
T Consensus 35 ~e~~l~~I~~~l~~~~~~t~~eLA~~l~is~s-tVsr~l~~Le~~GlI~r~~~~------------------------~v 89 (152)
T PRK11050 35 IEDYVELIADLIAEVGEARQVDIAARLGVSQP-TVAKMLKRLARDGLVEMRPYR------------------------GV 89 (152)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEecCC------------------------ce
Confidence 33344555544444578999999999999854 577889999999999753321 36
Q ss_pred eecCchhhchHHHHH
Q 012112 448 RLSDPEGFLLSNELI 462 (471)
Q Consensus 448 ~lt~~~G~~~~n~i~ 462 (471)
+|| ++|..+...+.
T Consensus 90 ~LT-~~G~~l~~~~~ 103 (152)
T PRK11050 90 FLT-PEGEKLAQESR 103 (152)
T ss_pred EEC-chHHHHHHHHH
Confidence 886 89998877654
No 249
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=73.92 E-value=12 Score=35.00 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
+.|+..|....++...++.+++|.+.. .+...++.|++.|||...
T Consensus 4 ~~IL~~L~~~~~~t~~eLA~~lgis~~-tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 4 EDILSYLLKQGQATAAALAEALAISPQ-AVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEe
Confidence 455666666778999999999999864 577899999999999865
No 250
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.84 E-value=43 Score=32.15 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC-----------CCCCC---
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS-----------LPHQT--- 228 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G-----------lPgqT--- 228 (471)
++.++.++++|++.|.+... + ..+ ..+..+.++++|++-..+.+-.+ .|+..
T Consensus 17 ~e~~~~~~e~G~~~vEl~~~-~----------~~~---~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
T TIGR03234 17 LERFAAAAQAGFTGVEYLFP-Y----------DWD---AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEF 82 (254)
T ss_pred HHHHHHHHHcCCCEEEecCC-c----------cCC---HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHH
Confidence 68888999999999988541 1 122 33344566788887333322111 12211
Q ss_pred HHHHHHHHHHHHhCCCCcEEEE
Q 012112 229 PQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y 250 (471)
.+.+++.++.+.+++...|.+.
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~ 104 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCL 104 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEEC
Confidence 3566678888888999877653
No 251
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=73.72 E-value=40 Score=33.39 Aligned_cols=120 Identities=10% Similarity=0.114 Sum_probs=74.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHH-HHHcC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDEL-LKSCG 193 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~-L~~l~ 193 (471)
++.|=++ +. .....+.+...+... +. ...++.-++| +.+-++...++|++.|.+-+ |.++.. .+.+|
T Consensus 40 v~~IE~~----s~-~~~d~~~v~~~~~~~--~~-~~~v~~~~r~---~~~die~A~~~g~~~v~i~~-s~S~~~~~~~~~ 107 (279)
T cd07947 40 IRQTEFF----LY-TEKDREAVEACLDRG--YK-FPEVTGWIRA---NKEDLKLVKEMGLKETGILM-SVSDYHIFKKLK 107 (279)
T ss_pred cceEEec----Cc-ChHHHHHHHHHHHcC--CC-CCEEEEEecC---CHHHHHHHHHcCcCEEEEEE-cCCHHHHHHHhC
Confidence 4555552 33 446666666666432 11 1345555555 56667888899999999977 666664 45777
Q ss_pred CCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH--------HHHHHHHHHHhCCCC-cEEEEe
Q 012112 194 RAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ--------MWEESLRRTVGAQPK-HVSVYD 251 (471)
Q Consensus 194 R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e--------~~~~~l~~~~~l~p~-his~y~ 251 (471)
+.. ..+.+.++++.+++.|.. |.+.+ -+-+.. -+.+.++.+.+.+++ .|++-.
T Consensus 108 ~t~~e~l~~~~~~v~~a~~~g~~-v~~~~----ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~D 171 (279)
T cd07947 108 MTREEAMEKYLEIVEEALDHGIK-PRCHL----EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCD 171 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCe-EEEEE----EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEecc
Confidence 764 567788889999999986 66655 233322 233444444558888 565543
No 252
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=72.75 E-value=46 Score=35.40 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred cCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHH--------------HHHHhccCCCCCCCCeeEEEEcCCCCCC-CC
Q 012112 65 KRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLC--------------REIIATKPGHKTSPPLETVFFGGGTPSL-VP 129 (471)
Q Consensus 65 ~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~--------------~Ei~~~~~~~~~~~~v~~i~fGGGTps~-l~ 129 (471)
..|.-|+++ .-..|.++++ +.++.+.+... .++..|-||.|.-++ +.
T Consensus 15 ~nCg~CG~~----------------~C~afA~~v~~g~~~~~~C~~~~~~~~~~l~~~~~--ppi~~V~iG~G~~~~~iG 76 (450)
T PRK04165 15 TNCGECGEP----------------TCLAFAMKLASGKAELDDCPYLSEEAKEKLEEASA--PPIREVKIGTGERAVKIG 76 (450)
T ss_pred CCCCCCCCc----------------cHHHHHHHHHcCCCCccCCCCCCHHHHHHHHHHhC--CCceeeeecCCCeEEEEC
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHH---------HHCC----CCEEEEccCCCCHHHHHHcCCCC
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL---------MDLG----VNRVSLGVQAFQDELLKSCGRAH 196 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l---------~~~G----vnrvsiGvQS~~d~~L~~l~R~~ 196 (471)
.+..- .+-...+.....+.+|+ .++++++.++.. .+.| .+-|.+|.-|.+++
T Consensus 77 GEtvL-----~rhe~tf~np~~Ia~eI-~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~--------- 141 (450)
T PRK04165 77 GETVL-----YRHEKTFFNPTGIAVDV-SDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPE--------- 141 (450)
T ss_pred Cccee-----eecCcCCCCCCEEEEEE-eCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHH---------
Q ss_pred CHHHHHHHHHHHHH-cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHH
Q 012112 197 GLKEVYEAIEIVKL-CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTET 275 (471)
Q Consensus 197 t~~~~~~ai~~~~~-~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~ 275 (471)
.+..+++.+++ .++. +++| +...+.+++-++......+.--|+-.=..+.-.++...+...-...+.+
T Consensus 142 ---~v~~~Vk~V~~~~dvP-LSID------T~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~d- 210 (450)
T PRK04165 142 ---KFAKAVKKVAETTDLP-LILC------SEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPN- 210 (450)
T ss_pred ---HHHHHHHHHHHhcCCC-EEEe------CCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchh-
Q ss_pred HHHHHHHHHHHHHHHCCC
Q 012112 276 QSANFYRMASSMLSSAGY 293 (471)
Q Consensus 276 ~~~~~~~~~~~~L~~~Gy 293 (471)
.+......+.+.++|+
T Consensus 211 --l~~L~~lv~~~~~~GI 226 (450)
T PRK04165 211 --LEELKELVEKLQAAGI 226 (450)
T ss_pred --HHHHHHHHHHHHHcCC
No 253
>PLN02321 2-isopropylmalate synthase
Probab=72.32 E-value=72 Score=35.47 Aligned_cols=128 Identities=10% Similarity=0.153 Sum_probs=72.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcC--CCCC---cEEEEEecCCCCCHHHHHHHHHC----CCCEEEEccCCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFG--LSLD---AEISMEMDPGTFDARKMEELMDL----GVNRVSLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~--l~~~---~eitiE~~P~~l~~e~l~~l~~~----GvnrvsiGvQS~~ 185 (471)
|+.|=. |.|.. ++.+.+. ++.|.+... +..+ ..++.-+ ....+.++.-.++ +..+|.+-+=+.+
T Consensus 122 Vd~IEv--GfP~~-Sp~D~e~-vr~i~~~~~~~v~~~~~v~~i~a~~---ra~~~dId~A~~al~~a~~~~I~i~~stSd 194 (632)
T PLN02321 122 VDIIEA--GFPIA-SPDDLEA-VKTIAKEVGNEVDEDGYVPVICGLS---RCNKKDIDAAWEAVKHAKRPRIHTFIATSE 194 (632)
T ss_pred CCEEEE--eCcCC-CccHHHH-HHHHHHhcccCCCccccceeeeeeh---hccHHhHHHHHHHhcCCCCCEEEEEEcCCH
Confidence 565555 46654 6666655 555544311 1111 1222222 2233444444444 3347888776666
Q ss_pred HHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 186 DELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 186 d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
-...+.+++.. ..+.+.++++.+++.|...+.++.-.+. .-.++-+.+.++.+.+.+++.|.+-
T Consensus 195 ~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~-rtd~d~l~~~~~~a~~aGa~~I~L~ 260 (632)
T PLN02321 195 IHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG-RSDPEFLYRILGEVIKAGATTLNIP 260 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC-CCCHHHHHHHHHHHHHcCCCEEEec
Confidence 66667777643 4566778888999998753444433332 1246777788888899999877543
No 254
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=72.29 E-value=23 Score=33.95 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCCCCCCCCeeEEEEcCCCC--C-CCCHHHHHHHHHHHHHH-cCCCCCcEEEEEe-cCCCCCHHHHHHHH
Q 012112 96 QLLCREIIATKPGHKTSPPLETVFFGGGTP--S-LVPPRFVSSILDTLTDK-FGLSLDAEISMEM-DPGTFDARKMEELM 170 (471)
Q Consensus 96 ~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTp--s-~l~~~~l~~ll~~l~~~-~~l~~~~eitiE~-~P~~l~~e~l~~l~ 170 (471)
-.+.+|++...+.. ...=++-+-+|.+ + .+.++ +++.+++. ..+. .++.+.+ || +..++.+.
T Consensus 16 ~~l~~~i~~l~~~g---~d~lHiDimDG~FVPN~tfg~~----~i~~lr~~~~~~~--~dvHLMv~~P----~~~i~~~~ 82 (223)
T PRK08745 16 ARLGEEVDNVLKAG---ADWVHFDVMDNHYVPNLTIGPM----VCQALRKHGITAP--IDVHLMVEPV----DRIVPDFA 82 (223)
T ss_pred HHHHHHHHHHHHcC---CCEEEEecccCccCCCcccCHH----HHHHHHhhCCCCC--EEEEeccCCH----HHHHHHHH
Confidence 34666666554321 1122333456653 3 23443 45566654 2322 3455554 44 67899999
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
++|++.|++=+|+. .+..++++.+|++|.+ ..+-+= |+...+.+..-+. .+|.|-+.
T Consensus 83 ~~gad~I~~H~Ea~--------------~~~~~~l~~Ir~~g~k-~Glaln---P~T~~~~i~~~l~-----~vD~VlvM 139 (223)
T PRK08745 83 DAGATTISFHPEAS--------------RHVHRTIQLIKSHGCQ-AGLVLN---PATPVDILDWVLP-----ELDLVLVM 139 (223)
T ss_pred HhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCc-eeEEeC---CCCCHHHHHHHHh-----hcCEEEEE
Confidence 99999999999973 2356788999999987 444332 5666666655444 34555444
Q ss_pred eccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccccccCCCcchhhhhhh-h-cCCCEEEEc
Q 012112 251 DLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGYECKHNLTY-W-KNKPFYGFG 324 (471)
Q Consensus 251 ~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~~g~~~~hn~~y-w-~~~~ylG~G 324 (471)
+++||.. |+.-.| ...+....+++.+.++|+. +.| +-.|--...|... . .+.|.+=.|
T Consensus 140 --tV~PGf~-------GQ~fi~---~~l~KI~~l~~~~~~~~~~-~~I---eVDGGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 140 --SVNPGFG-------GQAFIP---SALDKLRAIRKKIDALGKP-IRL---EIDGGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred --EECCCCC-------CccccH---HHHHHHHHHHHHHHhcCCC-eeE---EEECCCCHHHHHHHHHcCCCEEEEC
Confidence 5677754 221112 2333445566666777764 222 1234333344322 2 244666556
No 255
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=72.03 E-value=30 Score=33.33 Aligned_cols=101 Identities=17% Similarity=0.317 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~ 170 (471)
.++..+.+++... +++.|++.+ |-..+.|+++.++++.+++.++ +..+.+-+ +.+.-....+.++
T Consensus 146 ~~l~~~~~~~~~~--------g~~~i~l~D-t~G~~~P~~v~~li~~l~~~~~---~~~~~~H~Hn~~gla~an~laA~- 212 (265)
T cd03174 146 EYVLEVAKALEEA--------GADEISLKD-TVGLATPEEVAELVKALREALP---DVPLGLHTHNTLGLAVANSLAAL- 212 (265)
T ss_pred HHHHHHHHHHHHc--------CCCEEEech-hcCCcCHHHHHHHHHHHHHhCC---CCeEEEEeCCCCChHHHHHHHHH-
Confidence 3455555555432 256677753 5556788999999999988764 13444444 3444455666666
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|+++|.-.+-- ||++......+..+..++..|..
T Consensus 213 ~aG~~~id~s~~G--------~G~~~Gn~~~e~~~~~l~~~~~~ 248 (265)
T cd03174 213 EAGADRVDGSVNG--------LGERAGNAATEDLVAALEGLGID 248 (265)
T ss_pred HcCCCEEEecccc--------ccccccCccHHHHHHHHHhcCCC
Confidence 5789888765544 45555555566666666766654
No 256
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=72.01 E-value=1.2e+02 Score=31.04 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHHcCC--CCCcEEEEEecCCCC--CHHHHHH---HHHC-CCCEEEEccCCCCHHHHHHcCCCCCHHH
Q 012112 129 PPRFVSSILDTLTDKFGL--SLDAEISMEMDPGTF--DARKMEE---LMDL-GVNRVSLGVQAFQDELLKSCGRAHGLKE 200 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l--~~~~eitiE~~P~~l--~~e~l~~---l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~ 200 (471)
-.+.+.+.++.+...|.. ..+..+++|++|..- ++++++. |.+. |-.++-|-|= ...+
T Consensus 71 a~~di~~A~D~L~p~~e~~~g~~G~VS~EVdP~la~d~e~~i~eA~~L~~~~~~~nv~IKIP--------------aT~~ 136 (350)
T TIGR00876 71 ALDDILQACDALMPLWEDSDGNDGRISIEIDPFLADDAAKSIDEAIELFKILDRPNLFIKIP--------------ASEA 136 (350)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCcEEEEEccccccCHHHHHHHHHHHHHhhCCCCEEEEeC--------------CCHH
Confidence 345666777777766643 234589999998533 2333332 2222 2123433322 2256
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCC---HHHHHHHHHHHHhCCC
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQT---PQMWEESLRRTVGAQP 244 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT---~e~~~~~l~~~~~l~p 244 (471)
-.+|++.+.+.|+. ||+.+||.+ .|. .+.+.+.++...+.+.
T Consensus 137 Gi~Ai~~L~~~GI~-vNvTliFS~-~q~~~v~eA~~~Gl~~~~~~G~ 181 (350)
T TIGR00876 137 GIEAISALLAAGIP-VNVTLIFSP-KIAGEIADALAKEAEKARQAGH 181 (350)
T ss_pred HHHHHHHHHHCCCc-eeEEEeecH-HHHHHHHHHHHHHHHHHHHcCC
Confidence 67899999999997 999999986 454 4455556666666553
No 257
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=71.90 E-value=15 Score=29.05 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=47.2
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccc-cceeeecCch
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNR-LAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~lt~~~ 453 (471)
++..|-....++..++++..|.+- ..+...++.|++.|++.....- .+.| .-.++|| ++
T Consensus 5 Il~~L~~~~~~~f~~L~~~l~lt~-g~Ls~hL~~Le~~GyV~~~k~~------------------~~~~p~t~~~lT-~~ 64 (80)
T PF13601_consen 5 ILALLYANEEATFSELKEELGLTD-GNLSKHLKKLEEAGYVEVEKEF------------------EGRRPRTWYSLT-DK 64 (80)
T ss_dssp HHHHHHHHSEEEHHHHHHHTT--H-HHHHHHHHHHHHTTSEEEEEE-------------------SSS--EEEEEE--HH
T ss_pred HHHHHhhcCCCCHHHHHHHhCcCH-HHHHHHHHHHHHCCCEEEEEec------------------cCCCCeEEEEEC-HH
Confidence 444555567789999999988874 3577899999999999875310 1122 2258997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|+...+.-+..+
T Consensus 65 Gr~~~~~~~~~L 76 (80)
T PF13601_consen 65 GREAFERYVAAL 76 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998877655544
No 258
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=71.62 E-value=26 Score=31.53 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
+.|..-.+....+...+++++.+++... ..+.+++|.+.||+...... .++|| +
T Consensus 13 ~~Iy~l~~~~~~~~~~diA~~L~Vsp~s-Vt~ml~rL~~~GlV~~~~y~------------------------gi~LT-~ 66 (154)
T COG1321 13 ETIYELLEEKGFARTKDIAERLKVSPPS-VTEMLKRLERLGLVEYEPYG------------------------GVTLT-E 66 (154)
T ss_pred HHHHHHHhccCcccHHHHHHHhCCCcHH-HHHHHHHHHHCCCeEEecCC------------------------CeEEC-h
Confidence 3333333334458888899999988653 56789999999999975432 47896 9
Q ss_pred hhhchHHHHH
Q 012112 453 EGFLLSNELI 462 (471)
Q Consensus 453 ~G~~~~n~i~ 462 (471)
+|...+..++
T Consensus 67 ~G~~~a~~~~ 76 (154)
T COG1321 67 KGREKAKELL 76 (154)
T ss_pred hhHHHHHHHH
Confidence 9998887753
No 259
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=71.59 E-value=77 Score=32.02 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=69.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHH---HHHHHHCCCCEEEEccCCCCHHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARK---MEELMDLGVNRVSLGVQAFQDELLK 190 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~---l~~l~~~GvnrvsiGvQS~~d~~L~ 190 (471)
+..+-++--+|...+...-+++++.+++. +. ..-++++. +|..++++. ++.++++|+ .+++|+.
T Consensus 168 v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~--~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi---~v~~q~v------ 235 (321)
T TIGR03822 168 VKIVRFHTRVPVADPARVTPALIAALKTS-GK--TVYVALHANHARELTAEARAACARLIDAGI---PMVSQSV------ 235 (321)
T ss_pred ccEEEEeCCCcccChhhcCHHHHHHHHHc-CC--cEEEEecCCChhhcCHHHHHHHHHHHHcCC---EEEEEee------
Confidence 55566664433322222234556666553 22 23577776 466666654 445556774 5667764
Q ss_pred HcCC--CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC-----CHHHHHHHHHHHHhC
Q 012112 191 SCGR--AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ-----TPQMWEESLRRTVGA 242 (471)
Q Consensus 191 ~l~R--~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq-----T~e~~~~~l~~~~~l 242 (471)
+-| ..+.+++.+.++.+.+.|+....+..+.-.||. +.+...+.++.+.+.
T Consensus 236 -Ll~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~ 293 (321)
T TIGR03822 236 -LLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGR 293 (321)
T ss_pred -EeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHh
Confidence 322 356778888899999999987777777766663 456667777776654
No 260
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.51 E-value=36 Score=32.91 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=71.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCH---HHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDA---RKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 117 ~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~---e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
-.|+-.|.|+. +...+++..+.+. .+..|+.+-+ +|-.--+ +.-....+.|+ .++++.+
T Consensus 7 i~y~~~G~p~~---~~~~~~~~~l~~~---ad~iElgip~sdp~adG~~i~~~~~~a~~~g~-----------~~~v~~v 69 (244)
T PRK13125 7 VVYLTAGYPNV---ESFKEFIIGLVEL---VDILELGIPPKYPKYDGPVIRKSHRKVKGLDI-----------WPLLEEV 69 (244)
T ss_pred EEEEeCCCCCH---HHHHHHHHHHHhh---CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCc-----------HHHHHHH
Confidence 45777788865 6677777777653 3445666644 4521111 11122223344 4556655
Q ss_pred CCCCC------------HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChh
Q 012112 193 GRAHG------------LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKF 260 (471)
Q Consensus 193 ~R~~t------------~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l 260 (471)
.+..+ ..+..+-++.+.++|.+.+ ++..+|-++.++..+.++.+.+++.+-+- .+.|.|+.
T Consensus 70 r~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgv---ii~dlp~e~~~~~~~~~~~~~~~Gl~~~~----~v~p~T~~ 142 (244)
T PRK13125 70 RKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGV---LFPDLLIDYPDDLEKYVEIIKNKGLKPVF----FTSPKFPD 142 (244)
T ss_pred hccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEE---EECCCCCCcHHHHHHHHHHHHHcCCCEEE----EECCCCCH
Confidence 54211 2345566778888887744 33456778778888899999999887443 34466653
No 261
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=71.50 E-value=72 Score=30.84 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH----HHHHHcCCCCCHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD----ELLKSCGRAHGLKEVYEA 204 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d----~~L~~l~R~~t~~~~~~a 204 (471)
..+++..|.+.++ .++.+|+.| ++|.++...+..-+++.+-.+.=.+ .-|.. ....+.+...
T Consensus 53 ~d~Dv~~L~~~~~--------~~lNlE~a~---~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv---~~~~~~l~~~ 118 (239)
T PRK05265 53 RDRDVRLLRETLK--------TELNLEMAA---TEEMLDIALEVKPHQVTLVPEKREELTTEGGLDV---AGQFDKLKPA 118 (239)
T ss_pred CHHHHHHHHHhcC--------CCEEeccCC---CHHHHHHHHHCCCCEEEECCCCCCCccCCccchh---hcCHHHHHHH
Confidence 4455555544443 378889877 7999999999999999998765332 22222 2245778889
Q ss_pred HHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 205 IEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 205 i~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
++.++++|+. ||+.+ .-+ .+.++.+.+++.+.|-+|.
T Consensus 119 i~~L~~~gIr-VSLFi-----dP~----~~qi~~A~~~GAd~VELhT 155 (239)
T PRK05265 119 IARLKDAGIR-VSLFI-----DPD----PEQIEAAAEVGADRIELHT 155 (239)
T ss_pred HHHHHHCCCE-EEEEe-----CCC----HHHHHHHHHhCcCEEEEec
Confidence 9999999997 88743 112 3467788999999998886
No 262
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=71.31 E-value=13 Score=30.53 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=49.5
Q ss_pred HHHhccccCCCCHhh-HHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSFRTARGVDLKS-FGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~-~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
|..-|. ..|.|... ++++++.++.+ ....++.|++.|||+..++..+.-+...|+ .....-...-|.+|| .+
T Consensus 12 IL~hl~-~~~~Dy~k~ia~~l~~~~~~-v~~~l~~Le~~GLler~~g~~iK~~~~k~K----~~~e~~~hHtYY~LT-r~ 84 (92)
T PF10007_consen 12 ILQHLK-KAGPDYAKSIARRLKIPLEE-VREALEKLEEMGLLERVEGKTIKRSEAKFK----PKKEVHKHHTYYRLT-RE 84 (92)
T ss_pred HHHHHH-HHCCCcHHHHHHHHCCCHHH-HHHHHHHHHHCCCeEEecCcccchhhhhcc----cchhhhcCCceeeec-Hh
Confidence 334444 34777766 66678888764 667899999999999887654443333332 111112223488997 99
Q ss_pred hhchHH
Q 012112 454 GFLLSN 459 (471)
Q Consensus 454 G~~~~n 459 (471)
|.++.-
T Consensus 85 G~~llR 90 (92)
T PF10007_consen 85 GELLLR 90 (92)
T ss_pred HHHHHh
Confidence 987753
No 263
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=71.23 E-value=18 Score=32.93 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHHHhc
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHAFGV 468 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~~~ 468 (471)
.+...|++|++.|+++...++ +.| +|| ++|+-+.|.|..+++..
T Consensus 121 iiR~~LQqLE~~glVek~~~~-------------------~GR----~lT-~~Gr~~LD~iA~~v~~~ 164 (169)
T PTZ00095 121 ILRWICQQLEKLGLVEQGPKK-------------------KGR----RLT-RKGCNFANAFARQVTIR 164 (169)
T ss_pred HHHHHHHHHHHCCCEEecCCC-------------------CCC----EEC-HhHHHHHHHHHHHHHHH
Confidence 456789999999999864210 233 786 99999999998886643
No 264
>PRK09875 putative hydrolase; Provisional
Probab=70.98 E-value=1.2e+02 Score=30.36 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeeEE-EEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHH
Q 012112 90 RVSNYIQLLCREIIATKPGHKTSPPLETV-FFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEE 168 (471)
Q Consensus 90 ~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i-~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~ 168 (471)
..+...+.+++||....... +.+..-| -+|-+.+. +++.. ++++++..+. ....++.|++-+.+++...+.++.
T Consensus 97 ~~e~la~~~i~ei~~Gi~gt--~ikaGvIGeiG~~~~~-it~~E-~kvl~Aaa~a-~~~TG~pi~~Ht~~~~~g~e~l~i 171 (292)
T PRK09875 97 SVQELAQEMVDEIEQGIDGT--ELKAGIIAEIGSSEGK-ITPLE-EKVFIAAALA-HNQTGRPISTHTSFSTMGLEQLAL 171 (292)
T ss_pred CHHHHHHHHHHHHHHhhccC--CCcccEEEEEecCCCC-CCHHH-HHHHHHHHHH-HHHHCCcEEEcCCCccchHHHHHH
Confidence 45677788888888654321 1111223 34433322 34433 3444433222 122345677776666677899999
Q ss_pred HHHCCC--CEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-CCHHHHHHHHHHHHhCC-C
Q 012112 169 LMDLGV--NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-QTPQMWEESLRRTVGAQ-P 244 (471)
Q Consensus 169 l~~~Gv--nrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT~e~~~~~l~~~~~l~-p 244 (471)
+++.|+ .||.||=.. +..+.+.. ..+.+.|.. +..| .+|... ...+...+.+..+++.+ .
T Consensus 172 l~e~Gvd~~rvvi~H~d----------~~~d~~~~----~~l~~~G~~-l~fD-~~g~~~~~pd~~r~~~i~~L~~~Gy~ 235 (292)
T PRK09875 172 LQAHGVDLSRVTVGHCD----------LKDNLDNI----LKMIDLGAY-VQFD-TIGKNSYYPDEKRIAMLHALRDRGLL 235 (292)
T ss_pred HHHcCcCcceEEEeCCC----------CCCCHHHH----HHHHHcCCE-EEec-cCCCcccCCHHHHHHHHHHHHhcCCC
Confidence 999999 799887432 22344433 334456875 7887 456543 34566778888888889 8
Q ss_pred CcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q 012112 245 KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYEIS 299 (471)
Q Consensus 245 ~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis 299 (471)
++|-+.. -+-+.+++. ..|.. -.........-.|.++|+..-+|.
T Consensus 236 drilLS~-D~~~~~~~~---~~gg~------G~~~i~~~~ip~L~~~Gvse~~I~ 280 (292)
T PRK09875 236 NRVMLSM-DITRRSHLK---ANGGY------GYDYLLTTFIPQLRQSGFSQADVD 280 (292)
T ss_pred CeEEEeC-CCCCccccc---ccCCC------ChhHHHHHHHHHHHHcCCCHHHHH
Confidence 9887732 111111111 11211 123456667778888898765443
No 265
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=70.41 E-value=18 Score=31.80 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=52.6
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHHHHHHHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQMWEESLRRTV 240 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~~~~~l~~~~ 240 (471)
.++.++...+.+++-|.+..=+ .++...+.+.++.+++.|...+ -+++|= +--...+|.++.+.+.
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~-----------~~~~~~~~~~~~~L~~~~~~~~--~i~vGG~~~~~~~~~~~~~~~l~ 109 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLY-----------GHGEIDCRGLREKCIEAGLGDI--LLYVGGNLVVGKHDFEEVEKKFK 109 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcc-----------ccCHHHHHHHHHHHHhcCCCCC--eEEEECCCCCCccChHHHHHHHH
Confidence 3566666666666666554322 3567788888999999988654 455553 3234566888888889
Q ss_pred hCCCCcEEEEeccccCCChhh
Q 012112 241 GAQPKHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 241 ~l~p~his~y~l~~~pgT~l~ 261 (471)
+++.+.| |. |||++.
T Consensus 110 ~~G~~~v--f~----~~~~~~ 124 (137)
T PRK02261 110 EMGFDRV--FP----PGTDPE 124 (137)
T ss_pred HcCCCEE--EC----cCCCHH
Confidence 9997754 43 566543
No 266
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.17 E-value=42 Score=34.38 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=43.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
++.|.+.+ |-.++.|.++.++++.+++.++. .+|.+-++ .+.-....+..+ ++|+++|...+-.+
T Consensus 211 ad~I~l~D-T~G~a~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~lAA~-~aGa~~vd~sv~Gl 277 (347)
T PLN02746 211 CYEISLGD-TIGVGTPGTVVPMLEAVMAVVPV---DKLAVHFHDTYGQALANILVSL-QMGISTVDSSVAGL 277 (347)
T ss_pred CCEEEecC-CcCCcCHHHHHHHHHHHHHhCCC---CeEEEEECCCCChHHHHHHHHH-HhCCCEEEEecccc
Confidence 56788864 77788899999999999887642 24555443 222244555554 56899887766653
No 267
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=70.15 E-value=42 Score=33.26 Aligned_cols=101 Identities=12% Similarity=0.235 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCC--CCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG--TFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~--~l~~e~l~~l~ 170 (471)
.|+..+++++... +++.|++.+ |-.++.|.++.++++.+++.++ +.++.+-++-+ .-....+..+
T Consensus 147 ~~~~~~~~~~~~~--------G~~~i~l~D-T~G~~~P~~v~~l~~~l~~~~~---~~~i~~H~Hnd~Gla~AN~laA~- 213 (280)
T cd07945 147 DYVFQLVDFLSDL--------PIKRIMLPD-TLGILSPFETYTYISDMVKRYP---NLHFDFHAHNDYDLAVANVLAAV- 213 (280)
T ss_pred HHHHHHHHHHHHc--------CCCEEEecC-CCCCCCHHHHHHHHHHHHhhCC---CCeEEEEeCCCCCHHHHHHHHHH-
Confidence 4555566665432 267788864 7788899999999999988653 34566655432 2244555554
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH-cCCC
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL-CGVE 214 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~-~G~~ 214 (471)
++|+++|.-.+-.+- ........++.+..++. .|+.
T Consensus 214 ~aGa~~vd~s~~GlG--------e~aGN~~~E~~v~~L~~~~g~~ 250 (280)
T cd07945 214 KAGIKGLHTTVNGLG--------ERAGNAPLASVIAVLKDKLKVK 250 (280)
T ss_pred HhCCCEEEEeccccc--------ccccCccHHHHHHHHHHhcCCC
Confidence 579999987666643 33333445555555543 5765
No 268
>PF13730 HTH_36: Helix-turn-helix domain
Probab=69.88 E-value=22 Score=25.46 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCHhhHHHHHHHHhccccCCC---CHhhHHHHhCCChHHHHHHHHHHHHHCCCE
Q 012112 365 IDAKDLAMDVLMLSFRTARGV---DLKSFGETFGCSLVHTLCKAYKPYIESGHV 415 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi---~~~~~~~~fg~~~~~~~~~~~~~~~~~gll 415 (471)
|++.+...-..+....-..|- +.+.+++..|.+ ...+.+.++.|++.|||
T Consensus 3 Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 3 LSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVS-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCcCC
Confidence 566666666555555433333 678899999999 66788999999999985
No 269
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=69.68 E-value=44 Score=32.30 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~ 207 (471)
+++..++.+++....+...-.-.-=|.-..|..+-.++++..+++|| .++.| =++-+..+.+ ..+.+-++.
T Consensus 9 l~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V-~v~~G-Gtl~E~~~~q-------~~~~~Yl~~ 79 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGI-KVYPG-GTLFEIAHSK-------GKFDEYLNE 79 (237)
T ss_pred CCHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCC-eEeCC-ccHHHHHHHh-------hhHHHHHHH
Confidence 47889999999888765431111113334676677899999999998 58888 5555554432 466777889
Q ss_pred HHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCC
Q 012112 208 VKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPK 245 (471)
Q Consensus 208 ~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~ 245 (471)
+++.||+. +.+--|.=.-..+++.+-++.+.+.+..
T Consensus 80 ~k~lGf~~--IEiS~G~~~i~~~~~~rlI~~~~~~g~~ 115 (237)
T TIGR03849 80 CDELGFEA--VEISDGSMEISLEERCNLIERAKDNGFM 115 (237)
T ss_pred HHHcCCCE--EEEcCCccCCCHHHHHHHHHHHHhCCCe
Confidence 99999985 4455565566788999999999887754
No 270
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=69.54 E-value=19 Score=25.01 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEE
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVI 416 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~ 416 (471)
..++.-|....++...++++..|.+.. .....+++|++.|+++
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~~-tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISRS-TVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHH-HHHHHHHHHHHCcCcC
Confidence 455666777888999999999999865 4678899999999974
No 271
>PRK07328 histidinol-phosphatase; Provisional
Probab=68.70 E-value=36 Score=33.30 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCC---------CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPG---------TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEV 201 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~---------~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~ 201 (471)
+.++++++++.+. .+.+|+|-. .-+.+.++.+++.|+. |++|-.+=.++-+. + .+
T Consensus 177 ~~~~~il~~~~~~-------g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~-itigSDAH~~~~vg---~-----~~ 240 (269)
T PRK07328 177 ELYEEALDVIAAA-------GLALEVNTAGLRKPVGEIYPSPALLRACRERGIP-VVLGSDAHRPEEVG---F-----GF 240 (269)
T ss_pred HHHHHHHHHHHHc-------CCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCC-EEEeCCCCCHHHHh---c-----cH
Confidence 4567777777764 355555532 1257899999999996 99998886666552 1 45
Q ss_pred HHHHHHHHHcCCCeeE
Q 012112 202 YEAIEIVKLCGVENWS 217 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~ 217 (471)
.++.+.++++||+.+.
T Consensus 241 ~~a~~~l~~~G~~~~~ 256 (269)
T PRK07328 241 AEALALLKEVGYTETV 256 (269)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 5688899999998654
No 272
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=68.57 E-value=73 Score=34.43 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC---HHHHHHHHHHHHhCC
Q 012112 169 LMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQT---PQMWEESLRRTVGAQ 243 (471)
Q Consensus 169 l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT---~e~~~~~l~~~~~l~ 243 (471)
++.+|+.+|.+-+=+-+-...+.+++.. ..+.+.++++.+++.|+.. ..||.+..+ .+-+.+.++.+.+.+
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~----v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD----IQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce----EEeccccccccCHHHHHHHHHHHHhcC
Confidence 3344888999877776666677777643 5667788899999999752 445555543 455677778888899
Q ss_pred CCcEEEE
Q 012112 244 PKHVSVY 250 (471)
Q Consensus 244 p~his~y 250 (471)
++.|.+-
T Consensus 253 ad~I~l~ 259 (503)
T PLN03228 253 ATSVGIA 259 (503)
T ss_pred CCEEEEe
Confidence 9887543
No 273
>PRK15447 putative protease; Provisional
Probab=68.38 E-value=22 Score=35.58 Aligned_cols=79 Identities=24% Similarity=0.161 Sum_probs=55.2
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC--CHHHHHHHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ--TPQMWEESLRRT 239 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq--T~e~~~~~l~~~ 239 (471)
-++....+++.|+++|-+|.+.|+.+. ..+.+++.++++.++++|.+ |-+ -+|.= ..+++ +.+..+
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R~------~f~~~~l~e~v~~~~~~gkk-vyv----a~p~i~~~~~e~-~~l~~~ 84 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKRR------ELKVGDWLELAERLAAAGKE-VVL----STLALVEAPSEL-KELRRL 84 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCcc------CCCHHHHHHHHHHHHHcCCE-EEE----EecccccCHHHH-HHHHHH
Confidence 457778888889999999999888763 67999999999999999976 333 33442 12333 344445
Q ss_pred HhCCCCcEEEEec
Q 012112 240 VGAQPKHVSVYDL 252 (471)
Q Consensus 240 ~~l~p~his~y~l 252 (471)
++.+++.|-+..+
T Consensus 85 l~~~~~~v~v~d~ 97 (301)
T PRK15447 85 VENGEFLVEANDL 97 (301)
T ss_pred HhcCCCEEEEeCH
Confidence 6666665554443
No 274
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.15 E-value=39 Score=29.66 Aligned_cols=86 Identities=22% Similarity=0.207 Sum_probs=50.8
Q ss_pred HHHHCCCCEEEEccCCCCHHHHHHcCC------------CCCHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHHHHH
Q 012112 168 ELMDLGVNRVSLGVQAFQDELLKSCGR------------AHGLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQMWEE 234 (471)
Q Consensus 168 ~l~~~GvnrvsiGvQS~~d~~L~~l~R------------~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~~~~ 234 (471)
.|+++|+.=+.+|++--.+++.+...+ .++...+.+.++.+++.|...+- +|+|= |.-..+++.+
T Consensus 24 ~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~--vivGG~~vi~~~d~~~ 101 (134)
T TIGR01501 24 AFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGIL--LYVGGNLVVGKQDFPD 101 (134)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCE--EEecCCcCcChhhhHH
Confidence 344445555555554444444443221 46677788889999999986432 55653 2334566665
Q ss_pred HHHHHHhCCCCcEEEEeccccCCChhh
Q 012112 235 SLRRTVGAQPKHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 235 ~l~~~~~l~p~his~y~l~~~pgT~l~ 261 (471)
..+.+.+++.+.+ |. |||++.
T Consensus 102 ~~~~l~~~Gv~~v--F~----pgt~~~ 122 (134)
T TIGR01501 102 VEKRFKEMGFDRV--FA----PGTPPE 122 (134)
T ss_pred HHHHHHHcCCCEE--EC----cCCCHH
Confidence 5666788887654 43 677653
No 275
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=68.01 E-value=7.7 Score=35.47 Aligned_cols=57 Identities=16% Similarity=0.358 Sum_probs=42.4
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQ 182 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQ 182 (471)
++.|-+-- ++++++.++++.++...+ .+.+|+. +.++.+.+..+.+.|++.||+|--
T Consensus 101 ~d~I~lD~-----~~~~~~~~~v~~l~~~~~-----~v~ie~S-GGI~~~ni~~ya~~gvD~isvg~~ 157 (169)
T PF01729_consen 101 ADIIMLDN-----MSPEDLKEAVEELRELNP-----RVKIEAS-GGITLENIAEYAKTGVDVISVGSL 157 (169)
T ss_dssp -SEEEEES------CHHHHHHHHHHHHHHTT-----TSEEEEE-SSSSTTTHHHHHHTT-SEEEECHH
T ss_pred CCEEEecC-----cCHHHHHHHHHHHhhcCC-----cEEEEEE-CCCCHHHHHHHHhcCCCEEEcChh
Confidence 56666642 367899999998877643 2667765 468999999999999999999853
No 276
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=67.91 E-value=64 Score=34.79 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=43.2
Q ss_pred CcEEEEEe-cCCCCC--HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCeeEeee
Q 012112 149 DAEISMEM-DPGTFD--ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC-GVENWSLDL 220 (471)
Q Consensus 149 ~~eitiE~-~P~~l~--~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~Dl 220 (471)
...+-.|. +...++ .+....+.+.|.+-|-+|.+|..+ ..+.+..+++.+++. +.. ||+|-
T Consensus 151 ~~~v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p----------~~~~v~~~V~~l~~~~~~p-ISIDT 215 (499)
T TIGR00284 151 PLRVVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDD----------DPDVVKEKVKTALDALDSP-VIADT 215 (499)
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC----------cHHHHHHHHHHHHhhCCCc-EEEeC
Confidence 45677787 333454 367777889999999999999754 233577788888776 665 77773
No 277
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=67.74 E-value=11 Score=36.28 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
..+.+..+++.+++ .++++|+-++| +.+.++.-++.|.++|.+--..+-+..-. .+....+.+..+.+.+
T Consensus 111 ~~~~l~~~i~~L~~-----~gIrVSLFidP---~~~qi~~A~~~GAd~VELhTG~yA~a~~~--~~~~el~~~~~aa~~a 180 (239)
T PRK05265 111 QFDKLKPAIARLKD-----AGIRVSLFIDP---DPEQIEAAAEVGADRIELHTGPYADAKTE--AEAAELERIAKAAKLA 180 (239)
T ss_pred CHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCc--chHHHHHHHHHHHHHH
Confidence 44667777777765 45789999988 69999999999999998877666443111 1122366778888888
Q ss_pred HHcCCCeeEe
Q 012112 209 KLCGVENWSL 218 (471)
Q Consensus 209 ~~~G~~~v~~ 218 (471)
++.|+. ||.
T Consensus 181 ~~lGL~-VnA 189 (239)
T PRK05265 181 ASLGLG-VNA 189 (239)
T ss_pred HHcCCE-Eec
Confidence 999986 554
No 278
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=67.11 E-value=58 Score=31.96 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=54.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.|++.+ |-..+.|+++.+++..+++.++ ++..+.+-+ +.+.-....+..+ ++|++.|.-.+-- |
T Consensus 152 ~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~--~~~~i~~H~Hn~~Gla~AN~laA~-~aGa~~vd~s~~G--------~ 219 (266)
T cd07944 152 PDVFYIVD-SFGSMYPEDIKRIISLLRSNLD--KDIKLGFHAHNNLQLALANTLEAI-ELGVEIIDATVYG--------M 219 (266)
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeCCCccHHHHHHHHHH-HcCCCEEEEeccc--------C
Confidence 67788864 7778899999999999998764 223454444 3333355666666 5899988776665 4
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 012112 193 GRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~ 211 (471)
|++......++.+..++..
T Consensus 220 G~~aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 220 GRGAGNLPTELLLDYLNNK 238 (266)
T ss_pred CCCcCcHHHHHHHHHHHHh
Confidence 5544444445545444443
No 279
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=66.96 E-value=22 Score=29.36 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=46.7
Q ss_pred HHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhh
Q 012112 376 MLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGF 455 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~ 455 (471)
+..|....|....++.++.+.+.. .+...++.|++.||+....+. .+.|.-.+.|| ++|.
T Consensus 28 L~~l~~~~~~~~~~la~~l~i~~~-~vt~~l~~Le~~glv~r~~~~------------------~DrR~~~l~lT-~~G~ 87 (126)
T COG1846 28 LLALYEAGGITVKELAERLGLDRS-TVTRLLKRLEDKGLIERLRDP------------------EDRRAVLVRLT-EKGR 87 (126)
T ss_pred HHHHHHhCCCcHHHHHHHHCCCHH-HHHHHHHHHHHCCCeeecCCc------------------cccceeeEEEC-ccHH
Confidence 334444445443788888888754 467789999999999875421 12455679997 9999
Q ss_pred chHHHHH
Q 012112 456 LLSNELI 462 (471)
Q Consensus 456 ~~~n~i~ 462 (471)
.+...+.
T Consensus 88 ~~~~~~~ 94 (126)
T COG1846 88 ELLEQLL 94 (126)
T ss_pred HHHHHhc
Confidence 8876653
No 280
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=66.83 E-value=78 Score=31.47 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..++..+++.+....... ...++.|-+. +|-....|.++.++++.+++.++-..+.++.+-++ .+.-....+..+
T Consensus 155 ~~~l~~~~~~~~~~~~~g--~~~~~~i~la-DTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~ 231 (284)
T cd07942 155 LDFALEVCEAVIDVWQPT--PENKIILNLP-ATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELAL 231 (284)
T ss_pred HHHHHHHHHHHHHhhcCC--CCcceEEEcc-ccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHH
Confidence 456666666654331101 0113456665 46677899999999999988775433345555553 222244555555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|+++|+-.+.. +|-.......++.+..++..|+.
T Consensus 232 -~aG~~~id~~~~g--------~GeRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 232 -LAGADRVEGTLFG--------NGERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred -HhCCCEEEeeCcc--------CCccccchhHHHHHHHHHhcCCC
Confidence 6799999855554 34333333344444445555665
No 281
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.46 E-value=78 Score=31.02 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=61.7
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.|.++||+.|.+|-= -...+..++++.+.+.+.. ..+ ....-| + .++++.+.+.+
T Consensus 26 ~i~~~L~~~Gv~~IEvG~P-------------~~~~~~~~~~~~l~~~~~~-~~v-~~~~r~--~----~~di~~a~~~g 84 (262)
T cd07948 26 EIAKALDAFGVDYIELTSP-------------AASPQSRADCEAIAKLGLK-AKI-LTHIRC--H----MDDARIAVETG 84 (262)
T ss_pred HHHHHHHHcCCCEEEEECC-------------CCCHHHHHHHHHHHhCCCC-CcE-EEEecC--C----HHHHHHHHHcC
Confidence 6777888899999999941 1224445566666655543 222 222222 1 23577778889
Q ss_pred CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 244 PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 244 p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
++.|.++. +-++.+.+...+ .+.++..+....+.+..++.|+.
T Consensus 85 ~~~i~i~~----~~S~~~~~~~~~----~~~~e~~~~~~~~i~~a~~~G~~ 127 (262)
T cd07948 85 VDGVDLVF----GTSPFLREASHG----KSITEIIESAVEVIEFVKSKGIE 127 (262)
T ss_pred cCEEEEEE----ecCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHCCCe
Confidence 98887664 333333322222 24567777788888888888875
No 282
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=66.02 E-value=23 Score=34.17 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
..+.+..++..+++ .++++|+-++| +.+.++.-++.|.++|.+--..+-+..-+. .+....+.+..+.+.+
T Consensus 108 ~~~~l~~~i~~l~~-----~gI~VSLFiDP---~~~qi~~A~~~GAd~VELhTG~YA~a~~~~-~~~~el~~i~~aa~~A 178 (237)
T TIGR00559 108 LKDKLCELVKRFHA-----AGIEVSLFIDA---DKDQISAAAEVGADRIEIHTGPYANAYNKK-EMAEELQRIVKASVHA 178 (237)
T ss_pred CHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCch-hHHHHHHHHHHHHHHH
Confidence 44567777777765 46789999999 499999999999999998776664421100 0011356678888888
Q ss_pred HHcCCCeeEe
Q 012112 209 KLCGVENWSL 218 (471)
Q Consensus 209 ~~~G~~~v~~ 218 (471)
++.|+. ||.
T Consensus 179 ~~lGL~-VnA 187 (237)
T TIGR00559 179 HSLGLK-VNA 187 (237)
T ss_pred HHcCCE-Eec
Confidence 999986 554
No 283
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=65.74 E-value=39 Score=31.83 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=53.3
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC--C--CH-------HHHHHHHHCCCCEEEEccCCCCHH
Q 012112 119 FFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT--F--DA-------RKMEELMDLGVNRVSLGVQAFQDE 187 (471)
Q Consensus 119 ~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~--l--~~-------e~l~~l~~~GvnrvsiGvQS~~d~ 187 (471)
..||=|||+ .+++.+++. .+.++.+-++|.. + ++ +.++.++++|++-+-+|+-+-|-+
T Consensus 31 ~~GGlTPS~-------g~i~~~~~~----~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~ 99 (201)
T PF03932_consen 31 EVGGLTPSL-------GLIRQAREA----VDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGE 99 (201)
T ss_dssp GGT-B---H-------HHHHHHHHH----TTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSS
T ss_pred cCCCcCcCH-------HHHHHHHhh----cCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCC
Confidence 457778876 334444443 2357888888853 2 33 566778889999999999765442
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcE
Q 012112 188 LLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 188 ~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~hi 247 (471)
.+.+...+.++.++ |++ +.+.--|- ++ .++.+.++.+.++++++|
T Consensus 100 --------iD~~~~~~Li~~a~--~~~-~tFHRAfD---~~-~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 100 --------IDEEALEELIEAAG--GMP-VTFHRAFD---EV-PDPEEALEQLIELGFDRV 144 (201)
T ss_dssp --------B-HHHHHHHHHHHT--TSE-EEE-GGGG---GS-STHHHHHHHHHHHT-SEE
T ss_pred --------cCHHHHHHHHHhcC--CCe-EEEeCcHH---Hh-CCHHHHHHHHHhcCCCEE
Confidence 34444555555544 443 33222221 11 237778888999998877
No 284
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=65.50 E-value=12 Score=35.94 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=68.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHH
Q 012112 122 GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEV 201 (471)
Q Consensus 122 GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~ 201 (471)
||---.-..+.+..++..+++ .++++|+-++| +.+.++.-++.|.++|.+--..+-+..-+ -.+....+.+
T Consensus 101 gGldv~~~~~~l~~~i~~l~~-----~gI~VSLFiDP---d~~qi~~A~~~GAd~VELhTG~Ya~a~~~-~~~~~el~~i 171 (234)
T cd00003 101 GGLDVAGQAEKLKPIIERLKD-----AGIRVSLFIDP---DPEQIEAAKEVGADRVELHTGPYANAYDK-AEREAELERI 171 (234)
T ss_pred ccchhhcCHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCCc-hhHHHHHHHH
Confidence 443333345677777777775 45789999999 59999999999999998876665442211 0011135667
Q ss_pred HHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCC
Q 012112 202 YEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQP 244 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p 244 (471)
..+.+.+++.|+. ||. ==||--++...+.+ +..+.++.+
T Consensus 172 ~~aa~~a~~~GL~-VnA--GHgLny~Nv~~i~~-ip~i~ElnI 210 (234)
T cd00003 172 AKAAKLARELGLG-VNA--GHGLNYENVKPIAK-IPGIAELNI 210 (234)
T ss_pred HHHHHHHHHcCCE-Eec--CCCCCHHHHHHHHh-CCCCeEEcc
Confidence 7888888999986 554 34454444444433 333334333
No 285
>smart00642 Aamy Alpha-amylase domain.
Probab=65.36 E-value=16 Score=33.12 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCEEEEccC--CC---------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 164 RKMEELMDLGVNRVSLGVQ--AF---------QDELLKSCG-RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQ--S~---------~d~~L~~l~-R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
++|..++++|++.|-|..= +. +..-...++ +--+.++..+.++.+++.|+. |-+|+++..-+.
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~-vilD~V~NH~~~ 97 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIK-VILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCE-EEEEECCCCCCC
Confidence 4556677777777655431 11 112222333 224789999999999999998 999999987555
No 286
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=65.11 E-value=1.2e+02 Score=29.98 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=40.6
Q ss_pred HHHHHHHHCC-CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 164 RKMEELMDLG-VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 164 e~l~~l~~~G-vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
+.++.+.+.| ++-|.++--++.-- ..|.++..+.++.+.+.--. .+.+|+|.-+-+.++..+..+.+.++
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~-------~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~la~~a~~~ 95 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENF-------MLSTEEKKEIFRIAKDEAKD--QIALIAQVGSVNLKEAVELGKYATEL 95 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccc-------cCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHHh
Confidence 3444455566 77766653322111 11334444444444333111 24466666556666666666777777
Q ss_pred CCCcEEEEe
Q 012112 243 QPKHVSVYD 251 (471)
Q Consensus 243 ~p~his~y~ 251 (471)
+++.|.+.+
T Consensus 96 Gad~v~v~~ 104 (290)
T TIGR00683 96 GYDCLSAVT 104 (290)
T ss_pred CCCEEEEeC
Confidence 777666643
No 287
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=65.02 E-value=27 Score=26.65 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHhccccCC--CCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 370 LAMDVLMLSFRTARG--VDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 370 ~~~e~~~~~Lr~~~g--i~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
...+.|+.-|+...+ +...++.+..|.+-. .....|..|.+.|+|....
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~-~v~r~L~~L~~~G~V~~~~ 56 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKK-EVNRVLYSLEKKGKVCKQG 56 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEecC
Confidence 344666666777666 999999999999975 5788999999999998643
No 288
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=64.78 E-value=37 Score=32.50 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=60.4
Q ss_pred CCCCCCHH---HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHH---HHH-HCCCCEEEEccCCCCHHHHHHcCCCC
Q 012112 124 TPSLVPPR---FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKME---ELM-DLGVNRVSLGVQAFQDELLKSCGRAH 196 (471)
Q Consensus 124 Tps~l~~~---~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~---~l~-~~GvnrvsiGvQS~~d~~L~~l~R~~ 196 (471)
+||++..+ .+..++..+.+.++ .+.++++|+...+. ++.++ .|. ..| .++-+-| +.
T Consensus 28 NPsll~k~g~~~~~~~~~~i~~~i~--~~~~vs~ev~~~~~-~~mi~eA~~l~~~~~-~nv~VKI-------------P~ 90 (222)
T PRK12656 28 NPSIAKKEGDIDFFERIREVREIIG--DEASIHVQVVAQDY-EGILKDAHEIRRQCG-DDVYIKV-------------PV 90 (222)
T ss_pred CHHHHHhcCCCCHHHHHHHHHHHhC--CCCcEEEEEEECCH-HHHHHHHHHHHHHhC-CCEEEEe-------------CC
Confidence 47776643 34556666665542 24579999865442 23322 232 233 2333322 22
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
| .+-.+|++.+.+.|+. +++.+||.. .| .-.+.+.|.+.||.|-
T Consensus 91 T-~~Gl~Ai~~L~~~Gi~-vn~T~ifs~-~Q--------a~~Aa~aGa~yvsPyv 134 (222)
T PRK12656 91 T-PAGLAAIKTLKAEGYH-ITATAIYTV-FQ--------GLLAIEAGADYLAPYY 134 (222)
T ss_pred C-HHHHHHHHHHHHCCCc-eEEeeeCCH-HH--------HHHHHHCCCCEEeccc
Confidence 3 3367899999999998 999999965 22 2344568889888886
No 289
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=64.73 E-value=22 Score=28.59 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=39.0
Q ss_pred CCCHhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHH
Q 012112 384 GVDLKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELI 462 (471)
Q Consensus 384 gi~~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~ 462 (471)
.....++.++. |.+- ..+...|+.|++.|++....... ...|+ ..+|| ++|..+.. ++
T Consensus 18 ~~rf~el~~~l~~is~-~~L~~~L~~L~~~GLv~r~~~~~-----------------~p~~v-~Y~LT-~~G~~l~~-~l 76 (90)
T PF01638_consen 18 PMRFSELQRRLPGISP-KVLSQRLKELEEAGLVERRVYPE-----------------VPPRV-EYSLT-EKGKELLP-VL 76 (90)
T ss_dssp SEEHHHHHHHSTTS-H-HHHHHHHHHHHHTTSEEEEEESS-----------------SSSEE-EEEE--HHHHHHHH-HH
T ss_pred CCcHHHHHHhcchhHH-HHHHHHHHHHHHcchhhcccccC-----------------CCCCC-ccCCC-cCHHHHHH-HH
Confidence 35566666666 5553 35678899999999998653211 12233 36997 99999974 44
Q ss_pred HHHHh
Q 012112 463 SHAFG 467 (471)
Q Consensus 463 ~~~~~ 467 (471)
..+..
T Consensus 77 ~~l~~ 81 (90)
T PF01638_consen 77 EALEE 81 (90)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 290
>PRK12999 pyruvate carboxylase; Reviewed
Probab=64.67 E-value=42 Score=40.09 Aligned_cols=105 Identities=15% Similarity=0.215 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+.+++... +++.|+|-+ |-.++.|..+.+++..|++.+++ .|.+-+| .+.-....++++
T Consensus 690 ~~~~~~~a~~l~~~--------Ga~~i~ikD-t~G~l~P~~~~~lv~~lk~~~~i----pi~~H~Hnt~Gla~an~laA~ 756 (1146)
T PRK12999 690 LDYYVDLAKELEKA--------GAHILAIKD-MAGLLKPAAAYELVSALKEEVDL----PIHLHTHDTSGNGLATYLAAA 756 (1146)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEECC-ccCCCCHHHHHHHHHHHHHHcCC----eEEEEeCCCCchHHHHHHHHH
Confidence 44555677777643 267888864 78889999999999999998743 4555553 333345555555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
++|++.|...+-++ +...+.......+..++..|++ .++|
T Consensus 757 -~aGad~vD~av~gl--------g~~tgn~~le~vv~~L~~~~~~-t~id 796 (1146)
T PRK12999 757 -EAGVDIVDVAVASM--------SGLTSQPSLNSIVAALEGTERD-TGLD 796 (1146)
T ss_pred -HhCCCEEEecchhh--------cCCcCCHHHHHHHHHHHhcCCC-CCcC
Confidence 78999999988875 4445555566666666666765 3444
No 291
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.46 E-value=18 Score=36.04 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=46.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
++.|-+-. ++++.+++.+..++... ..+.+|+. +.++.+.++.+.+.||+.||+|-=+.+
T Consensus 220 aDiI~LDn-----m~~e~vk~av~~~~~~~-----~~v~ieaS-GGI~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 220 AELVLLDN-----FPVWQTQEAVQRRDARA-----PTVLLESS-GGLTLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred CCEEEeCC-----CCHHHHHHHHHHHhccC-----CCEEEEEE-CCCCHHHHHHHHhcCCCEEEeChhhcC
Confidence 56666642 46889999888776542 24678876 469999999999999999999976543
No 292
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=64.36 E-value=19 Score=36.43 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=53.7
Q ss_pred CeeEEEEcCCCCCCCCHHHHHH--------HHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 114 PLETVFFGGGTPSLVPPRFVSS--------ILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~--------ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
+++.|++++.+.++++++.+++ +++.+++.-. + .+. .+...-+...+..+.+.|++-++++-.. |
T Consensus 195 G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~---~-~~~--lH~cG~~~~~~~~l~~~g~d~~~~~~~~-~ 267 (343)
T PF01208_consen 195 GADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAGK---D-PVI--LHICGNTTPILDDLADLGADVLSVDEKV-D 267 (343)
T ss_dssp T-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHET---E--EE--EEETTHG-GGHHHHHTSS-SEEEE-TTS--
T ss_pred CCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCC---C-ceE--EEECCchHHHHHHHHhcCCCEEEEcCCC-C
Confidence 3678888888899999987654 4455554311 0 122 2333335569999999999988874222 1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-HcC-CCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 186 DELLKSCGRAHGLKEVYEAIEIVK-LCG-VENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 186 d~~L~~l~R~~t~~~~~~ai~~~~-~~G-~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
+.++.+.+. +.- +.| +|-+--|. -|.+++++.++.+++
T Consensus 268 ---------------~~~~~~~~~~~~~l~Gn--i~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 268 ---------------LAEAKRKLGDKIVLMGN--IDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp ---------------HHHHHHHHTTSSEEEEE--B-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhCCCeEEECC--CCcccccc-CCHHHHHHHHHHHHH
Confidence 122222221 000 112 33222233 688888888888877
No 293
>PRK14057 epimerase; Provisional
Probab=64.21 E-value=1.1e+02 Score=29.90 Aligned_cols=175 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHHHHHHhccCCCCCCCCeeEEE--EcCCC--CC-CCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHH
Q 012112 96 QLLCREIIATKPGHKTSPPLETVF--FGGGT--PS-LVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEEL 169 (471)
Q Consensus 96 ~~l~~Ei~~~~~~~~~~~~v~~i~--fGGGT--ps-~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l 169 (471)
..+.+|++.+.+.. ++.++ +-+|. |+ .+.++.++.+ ++.+ ..++.+.+ +| +..++.+
T Consensus 32 ~~L~~el~~l~~~g-----~d~lHiDVMDG~FVPNitfGp~~i~~i----~~~~----p~DvHLMV~~P----~~~i~~~ 94 (254)
T PRK14057 32 IALHRYLQQLEALN-----QPLLHLDLMDGQFCPQFTVGPWAVGQL----PQTF----IKDVHLMVADQ----WTAAQAC 94 (254)
T ss_pred HHHHHHHHHHHHCC-----CCEEEEeccCCccCCccccCHHHHHHh----ccCC----CeeEEeeeCCH----HHHHHHH
Confidence 34556666553321 33333 34554 33 2456555555 3322 23556655 55 6789999
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC------eeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE------NWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~------~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
.++|++.|++=+|+. ....++++.+|++|.+ ++..-+-+. |+-..+.++..+..
T Consensus 95 ~~aGad~It~H~Ea~--------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAln-P~Tp~e~i~~~l~~----- 154 (254)
T PRK14057 95 VKAGAHCITLQAEGD--------------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLC-PATPLDVIIPILSD----- 154 (254)
T ss_pred HHhCCCEEEEeeccc--------------cCHHHHHHHHHHcCCCcccccccceeEEEEC-CCCCHHHHHHHHHh-----
Confidence 999999999999964 2356788888998874 122333333 67667766655542
Q ss_pred CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eeccccccCCCcchhhhhhh--hcCCCE
Q 012112 244 PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYGEDGYECKHNLTY--WKNKPF 320 (471)
Q Consensus 244 p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~~g~~~~hn~~y--w~~~~y 320 (471)
+|.|-+. +++||.. |+.-. +...+-...+++++.++||. ..|+ +|--...|... =.+.|.
T Consensus 155 vD~VLvM--tV~PGfg-------GQ~Fi---~~~l~KI~~lr~~~~~~~~~~~IeV-----DGGI~~~ti~~l~~aGad~ 217 (254)
T PRK14057 155 VEVIQLL--AVNPGYG-------SKMRS---SDLHERVAQLLCLLGDKREGKIIVI-----DGSLTQDQLPSLIAQGIDR 217 (254)
T ss_pred CCEEEEE--EECCCCC-------chhcc---HHHHHHHHHHHHHHHhcCCCceEEE-----ECCCCHHHHHHHHHCCCCE
Confidence 5666554 5677753 21111 23344455666777888874 2333 34333344422 235687
Q ss_pred EEEc
Q 012112 321 YGFG 324 (471)
Q Consensus 321 lG~G 324 (471)
+=.|
T Consensus 218 ~V~G 221 (254)
T PRK14057 218 VVSG 221 (254)
T ss_pred EEEC
Confidence 7777
No 294
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=64.01 E-value=20 Score=33.80 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=64.4
Q ss_pred eeEEEEcCCC-----CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC--CHH
Q 012112 115 LETVFFGGGT-----PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF--QDE 187 (471)
Q Consensus 115 v~~i~fGGGT-----ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~--~d~ 187 (471)
.+.|-+|+++ .-+-..+.++++...|........++.+++.+ .+.+.++.--++|..-| .-+-++ +++
T Consensus 33 AdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT----~~~~v~~~aL~~g~~~i-nd~~~~~~~~~ 107 (210)
T PF00809_consen 33 ADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT----FNPEVAEAALKAGADII-NDISGFEDDPE 107 (210)
T ss_dssp -SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE----SSHHHHHHHHHHTSSEE-EETTTTSSSTT
T ss_pred CCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC----CCHHHHHHHHHcCcceE-Eecccccccch
Confidence 5677899886 22222346666665555433111345777764 45666665555576543 223332 566
Q ss_pred HHHHcC-----------C--C----CCH----HHHHHHHHH-------HHHcCC--CeeEeeeecCCCCCCHHHHHHHHH
Q 012112 188 LLKSCG-----------R--A----HGL----KEVYEAIEI-------VKLCGV--ENWSLDLISSLPHQTPQMWEESLR 237 (471)
Q Consensus 188 ~L~~l~-----------R--~----~t~----~~~~~ai~~-------~~~~G~--~~v~~DlI~GlPgqT~e~~~~~l~ 237 (471)
++..+. + . .+. +-+.+.++. +.++|+ ++|-+|-.+|+ +-+.++-.+.++
T Consensus 108 ~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf-~~~~~~~~~~l~ 186 (210)
T PF00809_consen 108 MLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF-GKDPEQNLELLR 186 (210)
T ss_dssp HHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-STTHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-CCCHHHHHHHHH
Confidence 665321 1 1 111 113333333 445899 77999999999 766666555555
Q ss_pred HHHh
Q 012112 238 RTVG 241 (471)
Q Consensus 238 ~~~~ 241 (471)
.+..
T Consensus 187 ~i~~ 190 (210)
T PF00809_consen 187 NIEE 190 (210)
T ss_dssp THHH
T ss_pred HHHH
Confidence 5444
No 295
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=63.84 E-value=45 Score=39.80 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+.+++... +++.|.|. +|-.++.|..+.+++..|++.++ ..+.+-+| .+.-....++++
T Consensus 688 l~y~~~~ak~l~~~--------Gad~I~ik-Dt~Gll~P~~~~~Lv~~lk~~~~----~pi~~H~Hdt~Gla~an~laA~ 754 (1143)
T TIGR01235 688 LKYYTNLAVELEKA--------GAHILGIK-DMAGLLKPAAAKLLIKALREKTD----LPIHFHTHDTSGIAVASMLAAV 754 (1143)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEEC-CCcCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCCcHHHHHHHHH
Confidence 56667777887653 26788886 48888999999999999999874 34555553 333344555554
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|...+-++ +-..+...+...+..++..|++
T Consensus 755 -eaGad~vD~ai~gl--------~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 755 -EAGVDVVDVAVDSM--------SGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred -HhCCCEEEecchhh--------cCCCCCHhHHHHHHHHHhCCCC
Confidence 78999998888776 3333434455666666666665
No 296
>PRK08005 epimerase; Validated
Probab=63.30 E-value=23 Score=33.60 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 136 ILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 136 ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+++.+++...+ ..++.+.+ || +..++.+.++|++.|++=+|+.+ ...++++.+|++|.+
T Consensus 49 ~i~~l~~~t~~--~~DvHLMv~~P----~~~i~~~~~~gad~It~H~Ea~~--------------~~~~~l~~Ik~~G~k 108 (210)
T PRK08005 49 TIQAVAQQTRH--PLSFHLMVSSP----QRWLPWLAAIRPGWIFIHAESVQ--------------NPSEILADIRAIGAK 108 (210)
T ss_pred HHHHHHhcCCC--CeEEEeccCCH----HHHHHHHHHhCCCEEEEcccCcc--------------CHHHHHHHHHHcCCc
Confidence 34555554332 23555555 45 56899999999999999999641 355688899999987
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
+.+-+= |+...+.+..-+. .+|.|-+. +++||..
T Consensus 109 -~GlAln---P~Tp~~~i~~~l~-----~vD~VlvM--sV~PGf~ 142 (210)
T PRK08005 109 -AGLALN---PATPLLPYRYLAL-----QLDALMIM--TSEPDGR 142 (210)
T ss_pred -EEEEEC---CCCCHHHHHHHHH-----hcCEEEEE--EecCCCc
Confidence 444443 5555565554443 34555444 5678764
No 297
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=62.60 E-value=55 Score=24.03 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHH
Q 012112 384 GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELI 462 (471)
Q Consensus 384 gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~ 462 (471)
++...++.+.+|.+.. .+...++.|.+.|++....+. +..++++| + |..+.+.+.
T Consensus 20 ~~~~~ei~~~~~i~~~-~i~~~l~~L~~~g~i~~~~~~---------------------~~~~~~~~-~-g~~~~~~~~ 74 (78)
T cd00090 20 PLTVSELAERLGLSQS-TVSRHLKKLEEAGLVESRREG---------------------RRVYYSLT-D-AERLLALLE 74 (78)
T ss_pred CcCHHHHHHHHCcCHh-HHHHHHHHHHHCCCeEEEEec---------------------cEEEEEeC-C-chHHHHHHH
Confidence 3889999999998854 467789999999999864321 23467886 7 887776653
No 298
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=62.34 E-value=40 Score=24.04 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=29.3
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
...+...++.+.+|.+.. .+...++.|.+.|++...
T Consensus 8 ~~~~~~~~i~~~l~is~~-~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 8 EGELCVCELAEILGLSQS-TVSHHLKKLREAGLVESR 43 (66)
T ss_pred cCCccHHHHHHHHCCCHH-HHHHHHHHHHHCCCeeee
Confidence 456888899999998764 467789999999999854
No 299
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=62.33 E-value=1.7e+02 Score=29.08 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=68.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CCC--EEEEccCCCCHHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GVN--RVSLGVQAFQDELLK 190 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--Gvn--rvsiGvQS~~d~~L~ 190 (471)
++.|=+| .|.+ ++... ++++.|.+.-....+.++..-++. ..+.++.-.++ |++ +|.+-+=+-+-...+
T Consensus 37 v~~IE~g--fP~~-~~~e~-e~~~~i~~~~~~~~~~~~~al~r~---~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~ 109 (284)
T cd07942 37 FKEIEVG--FPSA-SQTDF-DFVRELIEEDLIPDDVTIQVLTQA---REDLIERTFEALRGAKKAIVHLYNATSPLQRRV 109 (284)
T ss_pred CCEEEEe--CCCC-CHHHH-HHHHHHHHccCCCCCCEEEEEcCC---ChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHH
Confidence 6666665 6875 44442 445555332111223455544332 23324444444 665 688877666666667
Q ss_pred HcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCC--C--C-HHHHHHHHHHHHhC
Q 012112 191 SCGRAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPH--Q--T-PQMWEESLRRTVGA 242 (471)
Q Consensus 191 ~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg--q--T-~e~~~~~l~~~~~l 242 (471)
.+++.. ..+.+.++++.+++.|...++..|.+-+-+ - + ++-+.+.++.+.+.
T Consensus 110 ~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 110 VFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 788764 456677888899999876444444443334 2 2 55566666666665
No 300
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=62.32 E-value=89 Score=30.73 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
+..+.+.++|++-|.+.+-+-+....+.+ .++.+.+.+.++.+++. ++. |.+-+- |+.+.+++.+.++.+.+.
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~--~~~~~~~~eiv~~vr~~~~~p-v~vKl~---~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQL--GQDPEAVANLLKAVKAAVDIP-LLVKLS---PYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCccc--ccCHHHHHHHHHHHHHccCCC-EEEEeC---CCCCHHHHHHHHHHHHHc
Confidence 44556666677777766644332111111 13566777777777776 444 333333 356788899999999999
Q ss_pred CCCcEEEEe
Q 012112 243 QPKHVSVYD 251 (471)
Q Consensus 243 ~p~his~y~ 251 (471)
+++-|.+..
T Consensus 189 Gad~i~~~~ 197 (289)
T cd02810 189 GADGLTAIN 197 (289)
T ss_pred CCCEEEEEc
Confidence 999888764
No 301
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=62.04 E-value=57 Score=33.58 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=37.3
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
++.|++.+ |-..+.|.++.++++.+++.++ ..+.+-+ +.+.-....+..+ ++|+++|.-.+--
T Consensus 155 ~~~i~l~D-T~G~~~P~~v~~li~~l~~~~~----~~l~~H~Hnd~GlA~AN~laA~-~aGa~~vd~s~~G 219 (363)
T TIGR02090 155 ADRINIAD-TVGVLTPQKMEELIKKLKENVK----LPISVHCHNDFGLATANSIAGV-KAGAEQVHVTVNG 219 (363)
T ss_pred CCEEEEeC-CCCccCHHHHHHHHHHHhcccC----ceEEEEecCCCChHHHHHHHHH-HCCCCEEEEEeec
Confidence 55677754 5566777888888888776653 2333333 2222345556555 4588777665544
No 302
>PRK08392 hypothetical protein; Provisional
Probab=61.94 E-value=44 Score=31.55 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEI 207 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~ 207 (471)
.+.++++++++.+. .+.+|+| ...-+.+.++.+++.|+ +|++|=.+=.++-+ |+ +.++++.
T Consensus 136 ~~~~~~i~~~~~~~-------g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~v---g~------~~~a~~~ 198 (215)
T PRK08392 136 EEELKEILDLAEAY-------GKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDV---GN------VSWSLKV 198 (215)
T ss_pred HHHHHHHHHHHHHh-------CCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHC---Cc------HHHHHHH
Confidence 36778888888765 2455554 34557899999999996 69999877554333 21 4567889
Q ss_pred HHHcCCC
Q 012112 208 VKLCGVE 214 (471)
Q Consensus 208 ~~~~G~~ 214 (471)
++++|++
T Consensus 199 ~~~~g~~ 205 (215)
T PRK08392 199 FKKAGGK 205 (215)
T ss_pred HHHcCCC
Confidence 9999986
No 303
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=61.85 E-value=84 Score=30.91 Aligned_cols=82 Identities=12% Similarity=0.233 Sum_probs=49.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.|++.+ |-..+.|.++.++++.+++.++ +..+.+-++ .+.-....+..+ ++|+++|.-.+-- |
T Consensus 165 ~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~l~~H~Hnd~Gla~An~laA~-~aGa~~id~s~~G--------l 231 (273)
T cd07941 165 ADWLVLCD-TNGGTLPHEIAEIVKEVRERLP---GVPLGIHAHNDSGLAVANSLAAV-EAGATQVQGTING--------Y 231 (273)
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHHHhCC---CCeeEEEecCCCCcHHHHHHHHH-HcCCCEEEEeccc--------c
Confidence 56677754 6667788888888888888763 234444443 323355666666 4688888765544 4
Q ss_pred CCCCCHHHHHHHHHHHH
Q 012112 193 GRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~ 209 (471)
|++.........+..++
T Consensus 232 GeraGn~~~e~~~~~L~ 248 (273)
T cd07941 232 GERCGNANLCSIIPNLQ 248 (273)
T ss_pred ccccccccHHHHHHHHH
Confidence 55544444444444444
No 304
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=61.80 E-value=1.1e+02 Score=30.22 Aligned_cols=141 Identities=12% Similarity=0.046 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC-CHHHHHHHHHCCCCEEEEc--c--CCCCHHH----HHHcCCCCC
Q 012112 127 LVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF-DARKMEELMDLGVNRVSLG--V--QAFQDEL----LKSCGRAHG 197 (471)
Q Consensus 127 ~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l-~~e~l~~l~~~GvnrvsiG--v--QS~~d~~----L~~l~R~~t 197 (471)
.-+++.+.++++++++..+ ..+++-++|+.- ..+..+.+.++|++-|.+. + ...+.+. +..-..+.+
T Consensus 139 ~~~~~~~~eiv~~vr~~~~----~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~s 214 (300)
T TIGR01037 139 GQDPELSADVVKAVKDKTD----VPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLS 214 (300)
T ss_pred ccCHHHHHHHHHHHHHhcC----CCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCcccc
Confidence 3467889999999998753 357777776432 2466778899999999762 1 1111110 000000112
Q ss_pred HH----HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCC
Q 012112 198 LK----EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPT 273 (471)
Q Consensus 198 ~~----~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~ 273 (471)
.. -..+.+..++++ +++.+|..=-=.|.++..+-+ +.+.+-|.+..-.+..+
T Consensus 215 g~~~~~~~l~~v~~i~~~----~~ipvi~~GGI~s~~da~~~l----~~GAd~V~igr~~l~~p---------------- 270 (300)
T TIGR01037 215 GPAIKPIALRMVYDVYKM----VDIPIIGVGGITSFEDALEFL----MAGASAVQVGTAVYYRG---------------- 270 (300)
T ss_pred chhhhHHHHHHHHHHHhc----CCCCEEEECCCCCHHHHHHHH----HcCCCceeecHHHhcCc----------------
Confidence 11 123555555554 234444321124666655554 46888888776433322
Q ss_pred HHHHHHHHHHHHHHHHHCCCcee
Q 012112 274 ETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 274 ~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
+...++.....++|.+.||...
T Consensus 271 -~~~~~i~~~l~~~~~~~g~~~~ 292 (300)
T TIGR01037 271 -FAFKKIIEGLIAFLKAEGFTSI 292 (300)
T ss_pred -hHHHHHHHHHHHHHHHcCCCCH
Confidence 2344566677888999998753
No 305
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=61.46 E-value=1e+02 Score=29.74 Aligned_cols=118 Identities=6% Similarity=-0.013 Sum_probs=63.0
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee-----cCC--CC-----CCH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI-----SSL--PH-----QTP 229 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI-----~Gl--Pg-----qT~ 229 (471)
-++.++.++++|++.|.+...... ......+..++.+.-+.+.++|++-+++... +++ +. +..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~ 89 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPH-----AFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESL 89 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcc-----ccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHH
Confidence 468888999999999888531110 0011123345666667778888873332110 111 11 123
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 230 QMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 230 e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.+.+.++.+..++.+.|.+.+.. ++ +. .. ....-+...+.++.+.+..++.|..
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~--~~---~~----~~-~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAH--AG---YL----TP-PNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCC--CC---CC----CC-HHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 466677778888888877654321 01 00 00 0001123445566777777777753
No 306
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=61.16 E-value=1.3e+02 Score=29.33 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCCHHHHHHcCCC-------------CC-
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQDELLKSCGRA-------------HG- 197 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~d~~L~~l~R~-------------~t- 197 (471)
+..+++.+++.++ ..+++. +.+.+.++.--++|+.-| |+.... ++++++.+.+. .+
T Consensus 63 l~~~v~~~~~~~~----~plsiD----T~~~~vi~~al~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~~ 133 (257)
T TIGR01496 63 VVPVIKALRDQPD----VPISVD----TYRAEVARAALEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRTM 133 (257)
T ss_pred HHHHHHHHHhcCC----CeEEEe----CCCHHHHHHHHHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCccc
Confidence 4444555554432 345554 566777777667786544 222222 56665544331 11
Q ss_pred -------------HHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 198 -------------LKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 198 -------------~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
.+.+.+.++.+.++|+ ..+-+|-.+|+- .|.++-.+.|+.+..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~-ks~~~~~~~l~~i~~l 192 (257)
T TIGR01496 134 QENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGFG-KTPEHNLELLKHLEEF 192 (257)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcc-cCHHHHHHHHHHHHHH
Confidence 1224566677888898 357888888864 4666555555555443
No 307
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=61.10 E-value=26 Score=37.63 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=49.5
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
..++..|....+++..++++..|.+.. .+...++.|.+.|||+..+. |...+.|| +
T Consensus 9 ~~vL~~L~~~~~~s~~eLA~~l~l~~~-tVt~~i~~Le~kGlV~~~~~----------------------~~~~i~LT-e 64 (489)
T PRK04172 9 KKVLKALKELKEATLEELAEKLGLPPE-AVMRAAEWLEEKGLVKVEER----------------------VEEVYVLT-E 64 (489)
T ss_pred HHHHHHHHhCCCCCHHHHHHHhCcCHH-HHHHHHHHHHhCCCEEEEee----------------------eEEEEEEC-H
Confidence 445555555667999999999998864 46678999999999987542 12268996 9
Q ss_pred hhhchHHHH
Q 012112 453 EGFLLSNEL 461 (471)
Q Consensus 453 ~G~~~~n~i 461 (471)
+|..++..+
T Consensus 65 eG~~~~~~g 73 (489)
T PRK04172 65 EGKKYAEEG 73 (489)
T ss_pred HHHHHHHhc
Confidence 999998865
No 308
>PLN00196 alpha-amylase; Provisional
Probab=60.84 E-value=18 Score=38.24 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=48.3
Q ss_pred HHHHHHHHHCCCCEEEEcc--CCC-----CHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 163 ARKMEELMDLGVNRVSLGV--QAF-----QDELLKSCG--RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS~-----~d~~L~~l~--R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
.++|..|+++||+.|-|.. +|. +..-+-.++ |--|.++.++.++.+++.|++ |-+|+++..=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk-VilDvV~NH~~ 118 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ-VIADIVINHRT 118 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE-EEEEECccCcc
Confidence 5888999999999987763 332 222334454 334889999999999999998 99999998755
No 309
>PRK01362 putative translaldolase; Provisional
Probab=60.73 E-value=55 Score=31.12 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCCCHH--HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHH---HHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 125 PSLVPPR--FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK---MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 125 ps~l~~~--~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~---l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
||++..+ .+.++++.|.+.++ .++++|+..++. ++. .+.|++.+ .++-+-| +.|.
T Consensus 29 Psll~k~g~~~~~~~~~i~~~i~----g~vs~qv~~~d~-~~m~~~a~~l~~~~-~~i~iKI-------------P~T~- 88 (214)
T PRK01362 29 PSLIAKEGRDFEEVIKEICSIVD----GPVSAEVIALDA-EGMIKEGRELAKIA-PNVVVKI-------------PMTP- 88 (214)
T ss_pred HHHHHhcCCCHHHHHHHHHHhcC----CCEEEEEeeCCH-HHHHHHHHHHHHhC-CCEEEEe-------------CCCH-
Confidence 5554432 34455566655542 468999875432 232 33444443 3343333 3344
Q ss_pred HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 200 EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 200 ~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l 252 (471)
+-.++++.+.+.|+. +++.+||.. .| .-.+.+.+++.|+.|-=
T Consensus 89 ~G~~a~~~L~~~Gi~-v~~T~vfs~-~Q--------a~~Aa~aGa~yispyvg 131 (214)
T PRK01362 89 EGLKAVKALSKEGIK-TNVTLIFSA-NQ--------ALLAAKAGATYVSPFVG 131 (214)
T ss_pred HHHHHHHHHHHCCCc-eEEeeecCH-HH--------HHHHHhcCCcEEEeecc
Confidence 347889999999998 999999965 11 22445679998988863
No 310
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=60.58 E-value=1.4e+02 Score=27.42 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=65.8
Q ss_pred CHHHHHHHHHCCC--CEEEEccCCCCHHHHHH-cCC--C----CCHHHHHHHHHHHHHcCCCeeEeeeecCCC------C
Q 012112 162 DARKMEELMDLGV--NRVSLGVQAFQDELLKS-CGR--A----HGLKEVYEAIEIVKLCGVENWSLDLISSLP------H 226 (471)
Q Consensus 162 ~~e~l~~l~~~Gv--nrvsiGvQS~~d~~L~~-l~R--~----~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP------g 226 (471)
+.+-+..++++|+ .+|.+.-+..+++.++. +.. . .+.+++....+.+++.|.. +++.+-+... |
T Consensus 45 s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~~~~~~~ids~~~l~~l~~~~~~~~~~-~~v~lrv~~g~~~~R~G 123 (211)
T cd06808 45 SLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQGVIVVTVDSLEELEKLEEAALKAGPP-ARVLLRIDTGDENGKFG 123 (211)
T ss_pred CHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEEcCCCCCCCCC
Confidence 4555666777776 46777766665554433 222 1 2466666555566665543 3333333332 5
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
-+.+++.+.++.+.+.+ ++.+..+....|+... .........+.+....+.+.+.|.
T Consensus 124 ~~~~e~~~~~~~i~~~~--~l~l~Gl~~H~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~ 180 (211)
T cd06808 124 VRPEELKALLERAKELP--HLRLVGLHTHFGSADE--------DYSPFVEALSRFVAALDQLGELGI 180 (211)
T ss_pred CCHHHHHHHHHHHHhCC--CCcEEEEEEecCCCCC--------CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57788888888887764 4566666555554321 001123344455555566666554
No 311
>PRK12346 transaldolase A; Provisional
Probab=60.28 E-value=96 Score=31.37 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCC----CCCcEEEEEecCCCC-CH-HH-------HHHHHHCCCC--EEEEccCCCCHHHHHHcCCC
Q 012112 131 RFVSSILDTLTDKFGL----SLDAEISMEMDPGTF-DA-RK-------MEELMDLGVN--RVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l----~~~~eitiE~~P~~l-~~-e~-------l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~ 195 (471)
..+...++.+.-.|+. ..+..+++|++|..- +. +. ++.+.+.|++ |+-|-|=
T Consensus 67 ~~i~~a~D~l~v~~g~ei~~~v~G~Vs~EVdp~la~d~e~~i~~A~~l~~l~~~~gi~~~~i~IKIP------------- 133 (316)
T PRK12346 67 QQVVAACDKLAVNFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLA------------- 133 (316)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEccccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeC-------------
Confidence 4566666666655421 123479999998632 22 22 2333445664 4444332
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecccc
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVE 255 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~ 255 (471)
-| .+-.+|++.+.+.|+. +|+.+||.+. -...+.+.|...||.|-=.+.
T Consensus 134 aT-~eGi~A~~~L~~~GI~-~n~TliFS~~---------Qa~~aa~AGa~~ISPfVgRi~ 182 (316)
T PRK12346 134 ST-WEGIRAAEELEKEGIN-CNLTLLFSFA---------QARACAEAGVFLISPFVGRIY 182 (316)
T ss_pred CC-HHHHHHHHHHHHCCCc-eeEEEecCHH---------HHHHHHHcCCCEEEecccHHH
Confidence 23 3457788889899997 9999999761 234456679999998875443
No 312
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.45 E-value=1.3e+02 Score=29.45 Aligned_cols=78 Identities=21% Similarity=0.111 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.+.+.|++-|-+.--+.--. ..|.++..+.++.+.+..-. .+-+|.|.-+.+.++..+-.+.+.+++
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~-------~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAP-------TLTDEERKEVIEAVVEAVAG--RVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccHHHHHHHHHHHHHcC
Confidence 444555556777666544332110 12455555666655554111 245677776667776666777777777
Q ss_pred CCcEEEE
Q 012112 244 PKHVSVY 250 (471)
Q Consensus 244 p~his~y 250 (471)
++.+.+.
T Consensus 93 ad~v~v~ 99 (281)
T cd00408 93 ADGVLVV 99 (281)
T ss_pred CCEEEEC
Confidence 7766553
No 313
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=59.42 E-value=30 Score=33.82 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=60.1
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCH---------HHHHHcCCCCCHHHHHHHHHHHHHc--CCCeeEeeeecCCCCCCHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQD---------ELLKSCGRAHGLKEVYEAIEIVKLC--GVENWSLDLISSLPHQTPQ 230 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d---------~~L~~l~R~~t~~~~~~ai~~~~~~--G~~~v~~DlI~GlPgqT~e 230 (471)
+.+.++.|.++|++-|.+|+=--|| .-.+++..+.+.+++.+.++.+++. .+. + +-|+|-=|=- .-
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p-l-v~m~Y~Npi~-~~ 102 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP-I-GLLTYYNLIF-RK 102 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-E-EEEEeccHHh-hh
Confidence 5677888889999999999865443 3456677889999999999999875 444 2 2344432210 11
Q ss_pred HHHHHHHHHHhCCCCcEEEEec
Q 012112 231 MWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~his~y~l 252 (471)
.+.+-++.+.+.+++.+.+-.+
T Consensus 103 G~e~f~~~~~~aGvdgviipDl 124 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL 124 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC
Confidence 3345577788889887766543
No 314
>PRK06740 histidinol-phosphatase; Validated
Probab=59.07 E-value=71 Score=32.48 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCC----------CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPG----------TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKE 200 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~----------~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~ 200 (471)
+.++++++++.+. .+.+|+|-. ..+.+.++.+++.|+ +|.+|-.+=.++-+.. .
T Consensus 239 ~~~~~I~~a~~~~-------g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv-~~tlgSDAH~p~~VG~--------~ 302 (331)
T PRK06740 239 SYYKEIARALVET-------NTATEINAGLYYRYPVREMCPSPLFLQVLAKHEV-PITLSSDAHYPNDLGK--------Y 302 (331)
T ss_pred HHHHHHHHHHHHc-------CCEEEEECccccCCCCCCCCcCHHHHHHHHHCCC-eEEEeeCCCCHHHHHh--------H
Confidence 3677777777653 345555543 136789999999998 5999988865554432 2
Q ss_pred HHHHHHHHHHcCCCeeE
Q 012112 201 VYEAIEIVKLCGVENWS 217 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~ 217 (471)
..++++.++++|++.+.
T Consensus 303 ~~~a~~~l~~~G~~~i~ 319 (331)
T PRK06740 303 VEENVKTLRNHGVTSLA 319 (331)
T ss_pred HHHHHHHHHHcCCcEEE
Confidence 34678899999998554
No 315
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=58.58 E-value=53 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCC-CHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 383 RGV-DLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 383 ~gi-~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
..+ +..++.++||.+. ......++.|.+.|++....
T Consensus 18 ~~l~s~~~la~~~~vs~-~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGVSR-TTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEec
Confidence 345 6888889999885 35778899999999997544
No 316
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=58.55 E-value=39 Score=27.08 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=36.9
Q ss_pred hhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHH
Q 012112 388 KSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 388 ~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~ 464 (471)
.++.+.+|.+-. .+...++.|.+.||+....+. .++|| ++|..+...+...
T Consensus 3 ~ela~~l~is~s-tvs~~l~~L~~~glI~r~~~~------------------------~~~lT-~~g~~~~~~~~~~ 53 (96)
T smart00529 3 SEIAERLNVSPP-TVTQMLKKLEKDGLVEYEPYR------------------------GITLT-EKGRRLARRLLRK 53 (96)
T ss_pred HHHHHHhCCChH-HHHHHHHHHHHCCCEEEcCCC------------------------ceEec-hhHHHHHHHHHHH
Confidence 456677777643 467789999999999875421 47886 9999888776543
No 317
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=58.16 E-value=92 Score=28.85 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=61.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe---cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM---DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKS 191 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~---~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~ 191 (471)
++.+=+ ||+. ....=.+.++.+++.++ +..+-+.. +|+ ...++.+.++|.+.|++-..+.
T Consensus 25 v~~iev--~~~l--~~~~g~~~i~~l~~~~~---~~~i~~d~k~~d~~---~~~~~~~~~~Gad~i~vh~~~~------- 87 (206)
T TIGR03128 25 VDIIEI--GTPL--IKNEGIEAVKEMKEAFP---DRKVLADLKTMDAG---EYEAEQAFAAGADIVTVLGVAD------- 87 (206)
T ss_pred eeEEEe--CCHH--HHHhCHHHHHHHHHHCC---CCEEEEEEeeccch---HHHHHHHHHcCCCEEEEeccCC-------
Confidence 555555 3442 21222355677776653 22333333 444 2358889999999999877652
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 192 CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 192 l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.....+.++.+++.|+. +-++++- |.. ..+.+..+.+++++.|.++
T Consensus 88 ------~~~~~~~i~~~~~~g~~-~~~~~~~--~~t----~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 88 ------DATIKGAVKAAKKHGKE-VQVDLIN--VKD----KVKRAKELKELGADYIGVH 133 (206)
T ss_pred ------HHHHHHHHHHHHHcCCE-EEEEecC--CCC----hHHHHHHHHHcCCCEEEEc
Confidence 13456788889999887 4443321 222 3334455577799988663
No 318
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=57.53 E-value=9.6 Score=41.99 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCe---eEeeeecCCCCC
Q 012112 195 AHGLKEVYEAIEIVKLCGVEN---WSLDLISSLPHQ 227 (471)
Q Consensus 195 ~~t~~~~~~ai~~~~~~G~~~---v~~DlI~GlPgq 227 (471)
-.+.++...||+.++++|+.. +--|=||+||||
T Consensus 643 YGs~~dL~~AikALH~~GiqviaDwVpdQiYnLpg~ 678 (809)
T PF02324_consen 643 YGSVEDLRNAIKALHAAGIQVIADWVPDQIYNLPGK 678 (809)
T ss_dssp TB-HHHHHHHHHHHHHTT-EEEEEE-TSEE---SEE
T ss_pred CCCHHHHHHHHHHHHHcCcchhhhhchHhhhCCCCc
Confidence 348999999999999999972 235669999998
No 319
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.52 E-value=53 Score=32.78 Aligned_cols=60 Identities=10% Similarity=0.299 Sum_probs=46.2
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
.++.|-++- ++++++.++++.+++.. ..+.+|+. +.++.+.+..+.+.|++.||+|--+.
T Consensus 216 GaD~I~LDn-----~~~e~l~~av~~~~~~~-----~~i~leAs-GGIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 216 GADIIMLDN-----MPVDLMQQAVQLIRQQN-----PRVKIEAS-GNITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred CCCEEEECC-----CCHHHHHHHHHHHHhcC-----CCeEEEEE-CCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 367777762 57799999998886542 24677776 46899999999999999999986554
No 320
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=57.44 E-value=91 Score=25.86 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHH
Q 012112 199 KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSA 278 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~ 278 (471)
+.+.+..+.+++.+..+|.+-+|=|- -++.+.++.+.+.+..+|.+.+|...+|.-..+.+ |.++ .
T Consensus 16 ~~~~~l~~~l~~~~~~~v~~~~lE~~-----P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Di-------pge~--~ 81 (103)
T cd03413 16 AVYAALEYVLREEDPANVFVGTVEGY-----PGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDM-------AGDE--P 81 (103)
T ss_pred hHHHHHHHHHHhcCCCcEEEEEEcCC-----CCHHHHHHHHHHcCCCEEEEEehhheecccchhcC-------CCCC--c
Confidence 33444444555554355666666443 44788888889999999999999999988766543 3332 1
Q ss_pred HHHHHHHHHHHHCCCce
Q 012112 279 NFYRMASSMLSSAGYRH 295 (471)
Q Consensus 279 ~~~~~~~~~L~~~Gy~~ 295 (471)
+-| +..|+++||..
T Consensus 82 ~SW---~~~l~~~g~~v 95 (103)
T cd03413 82 DSW---KSILEAAGIKV 95 (103)
T ss_pred hhH---HHHHHHCCCee
Confidence 112 34678889875
No 321
>PLN02361 alpha-amylase
Probab=57.39 E-value=20 Score=37.58 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCCEEEEcc--CC-----CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 163 ARKMEELMDLGVNRVSLGV--QA-----FQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS-----~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
.+++..|+++|++.|-|.. +| .++.-+..++.. -|.++..+.|+.+++.|++ |-+|+++..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~-vi~D~V~NH 100 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVR-AMADIVINH 100 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCE-EEEEEcccc
Confidence 3667777888888775553 22 233444455544 3889999999999999998 999999976
No 322
>PRK05588 histidinol-phosphatase; Provisional
Probab=57.25 E-value=58 Score=31.52 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--------CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 131 RFVSSILDTLTDKFGLSLDAEISMEMDPGTF--------DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--------~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
..++++++++.+. .+.+|+|-..+ ....++.+++.|+..|++|-.+=.++.+. ..+.
T Consensus 166 ~~~~~il~~~~~~-------g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg--------~~~~ 230 (255)
T PRK05588 166 EIIDEILKVLIEK-------EKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIEDIG--------NNFK 230 (255)
T ss_pred HHHHHHHHHHHHc-------CCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHHHHH--------hhHH
Confidence 4567777777764 35666654333 24679999999998899998886665442 1567
Q ss_pred HHHHHHHHcCCC
Q 012112 203 EAIEIVKLCGVE 214 (471)
Q Consensus 203 ~ai~~~~~~G~~ 214 (471)
++++.++++|++
T Consensus 231 ~~~~~l~~~G~~ 242 (255)
T PRK05588 231 FALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHHcCCE
Confidence 789999999997
No 323
>PLN02591 tryptophan synthase
Probab=57.12 E-value=74 Score=31.04 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=60.4
Q ss_pred cCCC-CCHHHHHHHHHCCCCEEEEccCCCCHH---------HHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 157 DPGT-FDARKMEELMDLGVNRVSLGVQAFQDE---------LLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 157 ~P~~-l~~e~l~~l~~~GvnrvsiGvQS~~d~---------~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
.|+. .+.+.++.|.++|++-|.||+=.-|+- -.+++..+.+.+++.+.++.+|+. .+ +-+ +++++=+
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~-~p~-ilm~Y~N 88 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LS-CPI-VLFTYYN 88 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CC-CCE-EEEeccc
Confidence 5542 256778888899999999998776642 456777888899999998888853 22 222 1333322
Q ss_pred CCHH-HHHHHHHHHHhCCCCcEEEEecc
Q 012112 227 QTPQ-MWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 227 qT~e-~~~~~l~~~~~l~p~his~y~l~ 253 (471)
.-.. .+++-++.+.+.+++-+-+-.|.
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP 116 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLP 116 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCC
Confidence 2122 45556777788887766554443
No 324
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=56.98 E-value=1.5e+02 Score=32.89 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=52.0
Q ss_pred cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee-ecCCCCCCHHHHHHH
Q 012112 157 DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL-ISSLPHQTPQMWEES 235 (471)
Q Consensus 157 ~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl-I~GlPgqT~e~~~~~ 235 (471)
.|+++-+..++..++.|++.+-+.- ++| ....+..+++.++++|.. +..-+ ..+-|--|.+.+.+.
T Consensus 93 ~~d~vv~~~v~~a~~~Gidv~Rifd-~ln-----------d~~n~~~~i~~~k~~G~~-~~~~i~yt~sp~~t~e~~~~~ 159 (596)
T PRK14042 93 YADDVVRAFVKLAVNNGVDVFRVFD-ALN-----------DARNLKVAIDAIKSHKKH-AQGAICYTTSPVHTLDNFLEL 159 (596)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEcc-cCc-----------chHHHHHHHHHHHHcCCE-EEEEEEecCCCCCCHHHHHHH
Confidence 4566666788888899998877743 433 345566677777777764 32221 124577777777777
Q ss_pred HHHHHhCCCCcEEEE
Q 012112 236 LRRTVGAQPKHVSVY 250 (471)
Q Consensus 236 l~~~~~l~p~his~y 250 (471)
.+.+.+++++.|++-
T Consensus 160 ak~l~~~Gad~I~Ik 174 (596)
T PRK14042 160 GKKLAEMGCDSIAIK 174 (596)
T ss_pred HHHHHHcCCCEEEeC
Confidence 777777777665543
No 325
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=56.97 E-value=1.8e+02 Score=31.25 Aligned_cols=94 Identities=14% Similarity=0.291 Sum_probs=61.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHH----------------HHHHHHCCCCEEE
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARK----------------MEELMDLGVNRVS 178 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~----------------l~~l~~~Gvnrvs 178 (471)
+..+-+-.|.|..++++.++. +++. ++. .+.+++.+++++. ++.++++|++.|+
T Consensus 254 ~~EiTvE~grPd~it~e~L~~----Lk~~-Gv~-----RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In 323 (488)
T PRK08207 254 VKEFTVEAGRPDTITEEKLEV----LKKY-GVD-----RISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNIN 323 (488)
T ss_pred ceEEEEEcCCCCCCCHHHHHH----HHhc-CCC-----eEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 455667778898888765444 4432 321 4445666666544 4455667876565
Q ss_pred EccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 179 LGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 179 iGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
+.+=-+- -+.+.+++.+.++.+.+.+.+++++....=.||
T Consensus 324 ~DLI~GL--------PgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 324 MDLIIGL--------PGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred EEEEeCC--------CCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 4432221 257899999999999999999998877664555
No 326
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=56.86 E-value=88 Score=32.42 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=51.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++.|++. +|-..+.|.++.+++..+++.++ .++.+-+ +.+.-....+..+ ++|+++|.-.+-- |
T Consensus 159 a~~I~l~-DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~AN~laAv-~aGa~~vd~tv~G--------l 224 (378)
T PRK11858 159 ADRVRFC-DTVGILDPFTMYELVKELVEAVD----IPIEVHCHNDFGMATANALAGI-EAGAKQVHTTVNG--------L 224 (378)
T ss_pred CCEEEEe-ccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCcCHHHHHHHHHH-HcCCCEEEEeecc--------c
Confidence 5667776 46677888888888888887753 2344444 3333355566665 5788888665444 3
Q ss_pred CCCCCHHHHHHHHHHHH-HcCCC
Q 012112 193 GRAHGLKEVYEAIEIVK-LCGVE 214 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~-~~G~~ 214 (471)
|.+.......+.+..++ ..|++
T Consensus 225 GeraGNa~lE~vv~~L~~~~g~~ 247 (378)
T PRK11858 225 GERAGNAALEEVVMALKYLYGID 247 (378)
T ss_pred cccccCccHHHHHHHHHHHhCCC
Confidence 44433334444444444 34655
No 327
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=56.83 E-value=2.2e+02 Score=28.69 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMD 171 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~ 171 (471)
+.-++.+++.+..... ..+.+.+.|.-|.-++++.+.++++.+++. +..+-+.+ +.+.|...-+
T Consensus 113 ~~~~~~~l~~~~~~l~------~~d~VvlsGSlP~g~~~d~y~~li~~~~~~-----g~~vilD~-----Sg~~L~~~L~ 176 (310)
T COG1105 113 EAELEQFLEQLKALLE------SDDIVVLSGSLPPGVPPDAYAELIRILRQQ-----GAKVILDT-----SGEALLAALE 176 (310)
T ss_pred HHHHHHHHHHHHHhcc------cCCEEEEeCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEEC-----ChHHHHHHHc
Confidence 4445666666665332 246688999999999999999999999874 34555553 4555555445
Q ss_pred CCCCEEEEccCCCCHHHHH-HcCCCC-CHHHHHHHHHHHHHcCCCeeEe
Q 012112 172 LGVNRVSLGVQAFQDELLK-SCGRAH-GLKEVYEAIEIVKLCGVENWSL 218 (471)
Q Consensus 172 ~GvnrvsiGvQS~~d~~L~-~l~R~~-t~~~~~~ai~~~~~~G~~~v~~ 218 (471)
++..-|-- |.+.|. .+|+.. +.+|+.++++.+.+.|+++|-+
T Consensus 177 ~~P~lIKP-----N~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViV 220 (310)
T COG1105 177 AKPWLIKP-----NREELEALFGRELTTLEDVIKAARELLAEGIENVIV 220 (310)
T ss_pred cCCcEEec-----CHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEE
Confidence 55332222 344444 567764 5668888888888888886544
No 328
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=56.52 E-value=96 Score=29.64 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCCCCCCCCeeEEEEcCCCC--CC-CCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHH
Q 012112 96 QLLCREIIATKPGHKTSPPLETVFFGGGTP--SL-VPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMD 171 (471)
Q Consensus 96 ~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTp--s~-l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~ 171 (471)
..+.+|++...+.. ...-++-+-+|.+ ++ +.+ .+++++++.-.+ ...+.+.+ +| +..++.+.+
T Consensus 16 ~~l~~el~~~~~ag---ad~iH~DVMDghFVPNiTfGp----~~v~~l~~~t~~--p~DvHLMV~~p----~~~i~~fa~ 82 (220)
T COG0036 16 ARLGEELKALEAAG---ADLIHIDVMDGHFVPNITFGP----PVVKALRKITDL--PLDVHLMVENP----DRYIEAFAK 82 (220)
T ss_pred hHHHHHHHHHHHcC---CCEEEEeccCCCcCCCcccCH----HHHHHHhhcCCC--ceEEEEecCCH----HHHHHHHHH
Confidence 34556666553321 1223333456653 22 233 445666653222 23455555 44 789999999
Q ss_pred CCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 172 LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 172 ~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+|+++|++=+|+. ....+.++.+|+.|.+ ..+-|=.+-| .+.+..-|+. +|-|-+
T Consensus 83 agad~It~H~E~~--------------~~~~r~i~~Ik~~G~k-aGv~lnP~Tp---~~~i~~~l~~-----vD~Vll-- 137 (220)
T COG0036 83 AGADIITFHAEAT--------------EHIHRTIQLIKELGVK-AGLVLNPATP---LEALEPVLDD-----VDLVLL-- 137 (220)
T ss_pred hCCCEEEEEeccC--------------cCHHHHHHHHHHcCCe-EEEEECCCCC---HHHHHHHHhh-----CCEEEE--
Confidence 9999999999842 2466788999999987 6665554444 3333333322 233433
Q ss_pred ccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 252 LQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 252 l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
+++.||.. |+.-. +...+-.+.+++++.+.|
T Consensus 138 MsVnPGfg-------GQ~Fi---~~~l~Ki~~lr~~~~~~~ 168 (220)
T COG0036 138 MSVNPGFG-------GQKFI---PEVLEKIRELRAMIDERL 168 (220)
T ss_pred EeECCCCc-------ccccC---HHHHHHHHHHHHHhcccC
Confidence 35677752 22111 223344555666666655
No 329
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=56.44 E-value=62 Score=31.22 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=64.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHH----HHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 151 EISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDE----LLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 151 eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~----~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
++.+|+.| +++.++...+..-.++.+-.+.=.+- -|.. ....+.+...++.++++|+. ||+. |= |
T Consensus 64 ~lNlE~a~---~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv---~~~~~~l~~~i~~l~~~gI~-VSLF-iD--P- 132 (237)
T TIGR00559 64 PFNIEMAP---TEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDV---ARLKDKLCELVKRFHAAGIE-VSLF-ID--A- 132 (237)
T ss_pred CEEeccCC---CHHHHHHHHHcCCCEEEECCCCCCCccCCcCchh---hhCHHHHHHHHHHHHHCCCE-EEEE-eC--C-
Confidence 78899877 79999999999999999987753322 2222 22456788899999999997 8874 21 1
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
-.+.++.+.+++.+.|-+|.
T Consensus 133 -----~~~qi~~A~~~GAd~VELhT 152 (237)
T TIGR00559 133 -----DKDQISAAAEVGADRIEIHT 152 (237)
T ss_pred -----CHHHHHHHHHhCcCEEEEec
Confidence 14568888999999998886
No 330
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=56.44 E-value=2e+02 Score=28.91 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=79.5
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC----CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC
Q 012112 120 FGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF----DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 120 fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l----~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~ 195 (471)
-|||.--+-+++.+.++++.+++..+ .+..+|+-++++.- ..+.++.+.++|+..|.+.--+-.+ ..-+..
T Consensus 106 ~g~Gs~Ll~~~~~~~eiv~avr~~~~--~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~---~y~g~~ 180 (312)
T PRK10550 106 SGGGATLLKDPELIYQGAKAMREAVP--AHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED---GYRAEH 180 (312)
T ss_pred CCCchHhhcCHHHHHHHHHHHHHhcC--CCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc---CCCCCc
Confidence 45555445578899999999988753 23568888776532 3477788899999999886433211 000111
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHH
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTET 275 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~ 275 (471)
.+. +.+..++++ +++-+|..=-=.|.++..+-+ ..-+.|.|.+-.-.+.. --+.+++..|. +.|+.+
T Consensus 181 ~~~----~~i~~ik~~----~~iPVi~nGdI~t~~da~~~l---~~~g~DgVmiGRg~l~n-P~lf~~~~~g~-~~~~~~ 247 (312)
T PRK10550 181 INW----QAIGEIRQR----LTIPVIANGEIWDWQSAQQCM---AITGCDAVMIGRGALNI-PNLSRVVKYNE-PRMPWP 247 (312)
T ss_pred ccH----HHHHHHHhh----cCCcEEEeCCcCCHHHHHHHH---hccCCCEEEEcHHhHhC-cHHHHHhhcCC-CCCCHH
Confidence 122 345555554 223233322224677666655 34578888777643321 22344444444 445554
Q ss_pred HHHHHH
Q 012112 276 QSANFY 281 (471)
Q Consensus 276 ~~~~~~ 281 (471)
+..+++
T Consensus 248 e~~~~~ 253 (312)
T PRK10550 248 EVVALL 253 (312)
T ss_pred HHHHHH
Confidence 444433
No 331
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=55.96 E-value=2.1e+02 Score=28.17 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=39.6
Q ss_pred HHHHHHHHC-CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 164 RKMEELMDL-GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 164 e~l~~l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
..++.+.+. |++-|-++--+..- -.-|.++..+.++.+.++--. .+-+|.|....+.++..+..+.+.+.
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAKG--KVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhCC--CCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 344445555 66666554333211 012344555555544443001 24566666666666666666666666
Q ss_pred CCCcEEEE
Q 012112 243 QPKHVSVY 250 (471)
Q Consensus 243 ~p~his~y 250 (471)
+.+.+.+.
T Consensus 96 Gad~v~~~ 103 (288)
T cd00954 96 GYDAISAI 103 (288)
T ss_pred CCCEEEEe
Confidence 66665544
No 332
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=55.86 E-value=35 Score=25.09 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
...|+..|....+....++.+.+|.+... ....++.|.+.|+|+...
T Consensus 12 R~~Il~~L~~~~~~t~~ela~~l~~~~~t-~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 12 RLRILRLLASNGPMTVSELAEELGISQST-VSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHHHHHHHCSTBEHHHHHHHHTS-HHH-HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCCCHHH-HHHHHHHHHHCCCeEEec
Confidence 34455556667899999999999998754 667899999999998643
No 333
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=55.71 E-value=2.2e+02 Score=28.35 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHH----------------HHHCCCCEEE
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEE----------------LMDLGVNRVS 178 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~----------------l~~~Gvnrvs 178 (471)
+..+.++ ..|..++.+.++.+ ..+++. +..+.++.-.++.+++.++. ++++|+. ++
T Consensus 109 ~~~isi~-trpd~l~~e~l~~L-~~l~~~-----G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~-v~ 180 (302)
T TIGR01212 109 VVGLSVG-TRPDCVPDEVLDLL-AEYVER-----GYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIK-VC 180 (302)
T ss_pred EEEEEEE-ecCCcCCHHHHHHH-HHhhhC-----CceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCE-EE
Confidence 4455564 36877777665443 333321 22345666666666655544 4455653 43
Q ss_pred EccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC--------------HHHHHHHHHHHHhCCC
Q 012112 179 LGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT--------------PQMWEESLRRTVGAQP 244 (471)
Q Consensus 179 iGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT--------------~e~~~~~l~~~~~l~p 244 (471)
..+=-+-+ +.+.+++.+.++.+.+.+.+.|++....=+||-. .+++.+.+..+++.=+
T Consensus 181 ~~lI~GlP--------get~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~ 252 (302)
T TIGR01212 181 SHVILGLP--------GEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLP 252 (302)
T ss_pred EeEEECCC--------CCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 33322211 4578999999999999999999988888888833 3443334444444334
Q ss_pred CcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 245 KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 245 ~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
..+.++.++-...- ...-.+.++ ....++...+.+.|++.|-.|
T Consensus 253 ~~~~i~Rl~~~~~~---~~~l~~~~~----~~k~~~l~~i~~~l~~~~~~q 296 (302)
T TIGR01212 253 PEVVIHRISGDAPR---ETLIAPEWC----KNKWEIMNKISEELERRGTYQ 296 (302)
T ss_pred cCeEEEEecCCCCc---cceEccccc----ccHHHHHHHHHHHHHHcCCcc
Confidence 45556665543211 111233332 345677888888888877543
No 334
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=55.47 E-value=1.6e+02 Score=28.91 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+..+.+++... +++.|++-+ |-..+.|.++.+++..+++.++ +.++.+.++ .+.-....+..+
T Consensus 148 ~~~~~~~~~~~~~~--------Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~i~~H~Hnd~GlA~AN~laA~ 215 (274)
T cd07938 148 PERVAEVAERLLDL--------GCDEISLGD-TIGVATPAQVRRLLEAVLERFP---DEKLALHFHDTRGQALANILAAL 215 (274)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEECC-CCCccCHHHHHHHHHHHHHHCC---CCeEEEEECCCCChHHHHHHHHH
Confidence 34555555555432 267788864 6677899999999999988763 345666663 222244555554
Q ss_pred HHCCCCEEEEccC
Q 012112 170 MDLGVNRVSLGVQ 182 (471)
Q Consensus 170 ~~~GvnrvsiGvQ 182 (471)
++|+++|.-.+-
T Consensus 216 -~aGa~~id~t~~ 227 (274)
T cd07938 216 -EAGVRRFDSSVG 227 (274)
T ss_pred -HhCCCEEEEecc
Confidence 679998875544
No 335
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=55.45 E-value=57 Score=23.63 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.1
Q ss_pred HhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 387 LKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 387 ~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
..++++.+|.+- ..+...+..|.+.|++....
T Consensus 28 ~~~la~~~~is~-~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 28 ERELAEELGVSR-TTVREALRELEAEGLVERRP 59 (66)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEecC
Confidence 778888899884 45778999999999987543
No 336
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=55.19 E-value=57 Score=36.50 Aligned_cols=151 Identities=20% Similarity=0.218 Sum_probs=92.8
Q ss_pred HHHHHHHcCCCCCcEEEEEecCC-CCCHHHHHHHHHCCCCEEEEccCCC-----CHHHHHHc--CCCCCHHHHHHHHHHH
Q 012112 137 LDTLTDKFGLSLDAEISMEMDPG-TFDARKMEELMDLGVNRVSLGVQAF-----QDELLKSC--GRAHGLKEVYEAIEIV 208 (471)
Q Consensus 137 l~~l~~~~~l~~~~eitiE~~P~-~l~~e~l~~l~~~GvnrvsiGvQS~-----~d~~L~~l--~R~~t~~~~~~ai~~~ 208 (471)
-+.|++..+. +..+-+-|. ..+...++.++++|.. +.+..+.. +...|.++ ....+.+++.+.+...
T Consensus 234 ~~~Ie~~tG~----~p~~FayPyG~~n~~~~~iakeaGY~-~afT~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~v~~~ 308 (671)
T PRK14582 234 TEYIRTKAGK----NPRVWVWPYGEANGIALEELKKLGYD-MAFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITV 308 (671)
T ss_pred HHHHHHHhCC----CCcEEecCCCCCCHHHHHHHHHCCCe-EEEEeCCCCCCCCCcCccceEEecCCCCHHHHHHHHhcc
Confidence 3455555443 344556774 5799999999999985 44444332 11223222 3455777877777554
Q ss_pred HHcCCC---eeEeeeec-CCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcc-cCCCCCCCCHHHHHHHHHH
Q 012112 209 KLCGVE---NWSLDLIS-SLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILY-TPGEFPLPTETQSANFYRM 283 (471)
Q Consensus 209 ~~~G~~---~v~~DlI~-GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~-~~g~~~~p~~~~~~~~~~~ 283 (471)
.+.|.. ++.+|.|| .=|.|+.+.+...|+.+.++|+++|-+-.+.=..|+.+++-. -.. -.+|- .++.|..
T Consensus 309 ~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~---r~d~f~~ 384 (671)
T PRK14582 309 QEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPM---RADLFNR 384 (671)
T ss_pred cCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccccc---ccCCcCH
Confidence 444432 34567788 578899999999999999999999987777655576665421 111 11222 3445555
Q ss_pred HHHHH-HHCCCcee
Q 012112 284 ASSML-SSAGYRHY 296 (471)
Q Consensus 284 ~~~~L-~~~Gy~~y 296 (471)
+.-.| .++|.+.|
T Consensus 385 ~aw~l~~r~~v~v~ 398 (671)
T PRK14582 385 VAWQLRTRAGVNVY 398 (671)
T ss_pred HHHHHHHhhCCEEE
Confidence 33333 35687766
No 337
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=55.18 E-value=1.5e+02 Score=27.09 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=88.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
.-.+-|-+| |. +....++++.|++. + +..|+-+....+ .++.++.+.+.|. .||.-|++-.-+..+
T Consensus 7 ~V~LTFDDg-p~---~~~t~~~l~~L~~~-~----ikaTfFv~g~~~~~~~~~~~~i~~~Gh---eig~Ht~~H~~~~~~ 74 (191)
T TIGR02764 7 KIALTFDIS-WG---NDYTEPILDTLKEY-D----VKATFFLSGSWAERHPELVKEIVKDGH---EIGSHGYRHKNYTTL 74 (191)
T ss_pred EEEEEEECC-CC---cccHHHHHHHHHHc-C----CCEEEEeccHHHHHCHHHHHHHHhCCC---EEEECCcCCCCcccC
Confidence 445556555 32 23456778888764 3 345665554444 5689999999994 688888866545444
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccC----CCh-h----hh
Q 012112 193 GRAHGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQ----GTK-F----GI 262 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~p----gT~-l----~~ 262 (471)
....-.+++.++.+.+++. |.. .. .|-.|+-... ...++.+.+.+...+. +...... ++. . -+
T Consensus 75 ~~~~~~~ei~~~~~~l~~~~g~~-~~---~fr~P~G~~~--~~~~~~l~~~G~~~v~-w~~~~~D~~~~~~~~i~~~~~~ 147 (191)
T TIGR02764 75 EDEKIKKDILRAQEIIEKLTGKK-PT---LFRPPSGAFN--KAVLKAAESLGYTVVH-WSVDSRDWKNPGVESIVDRVVK 147 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCC-CC---EEECCCcCCC--HHHHHHHHHcCCeEEE-ecCCCCccCCCCHHHHHHHHHh
Confidence 3333345666666666665 443 22 2344543222 2345566677665332 2222111 100 1 11
Q ss_pred cccCCCCCCC----CHHHHHHHHHHHHHHHHHCCCceecc
Q 012112 263 LYTPGEFPLP----TETQSANFYRMASSMLSSAGYRHYEI 298 (471)
Q Consensus 263 ~~~~g~~~~p----~~~~~~~~~~~~~~~L~~~Gy~~yei 298 (471)
..+.|.+.+. ......+....+.+.|+++||+--.+
T Consensus 148 ~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 148 NTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred cCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 2334433221 12334566788899999999975443
No 338
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=54.98 E-value=54 Score=34.81 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=57.1
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC---------------C-
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH---------------Q- 227 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg---------------q- 227 (471)
+.++.++++|+..|++-+-..- -++|.+++.+.++.+.+.|.+.|++.-..+.|+ .
T Consensus 192 ~ai~~lr~~G~~~v~~dli~Gl--------Pgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~ 263 (453)
T PRK13347 192 RAVELLRAAGFESINFDLIYGL--------PHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAE 263 (453)
T ss_pred HHHHHHHhcCCCcEEEeEEEeC--------CCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHH
Confidence 5667777888876655432221 246889999999999999999888765545554 1
Q ss_pred -CHHHHHHHHHHHHhCCCCcEEEEeccccCCChh
Q 012112 228 -TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKF 260 (471)
Q Consensus 228 -T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l 260 (471)
..+.+....+.+.+.|-.++.+..+.- ||..+
T Consensus 264 ~~~~~~~~~~~~L~~~Gy~~~~~~~far-~~~~~ 296 (453)
T PRK13347 264 ERLRQARAVADRLLAAGYVPIGLDHFAL-PDDEL 296 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeccceeC-CCchh
Confidence 123344455666777877777776653 34443
No 339
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=54.98 E-value=1e+02 Score=29.13 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCCCHH---HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCH--HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 125 PSLVPPR---FVSSILDTLTDKFGLSLDAEISMEMDPGTFDA--RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 125 ps~l~~~---~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~--e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
||++..+ .+..++..+.+.. ..++++++...+.+. +..+.+.+.+ .++-+- =+.|.
T Consensus 28 Psll~k~~~~~~~~~~~~i~~~~----~~~v~~qv~~~~~e~~i~~a~~l~~~~-~~~~iK-------------IP~T~- 88 (211)
T cd00956 28 PSLIAKSGRIDFEAVLKEICEII----DGPVSAQVVSTDAEGMVAEARKLASLG-GNVVVK-------------IPVTE- 88 (211)
T ss_pred HHHHHhcCCcCHHHHHHHHHHhc----CCCEEEEEEeCCHHHHHHHHHHHHHhC-CCEEEE-------------EcCcH-
Confidence 5554432 3345555555543 236888886544321 3334444442 122221 13334
Q ss_pred HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 200 EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 200 ~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+-.++++.+++.|+. +++..+|.. +....+.+.+++.||.|-
T Consensus 89 ~gl~ai~~L~~~gi~-v~~T~V~s~---------~Qa~~Aa~AGA~yvsP~v 130 (211)
T cd00956 89 DGLKAIKKLSEEGIK-TNVTAIFSA---------AQALLAAKAGATYVSPFV 130 (211)
T ss_pred hHHHHHHHHHHcCCc-eeeEEecCH---------HHHHHHHHcCCCEEEEec
Confidence 677899999999998 999999965 234556677888887775
No 340
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=54.86 E-value=43 Score=28.75 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCC---HHHHHHHHHCCCCEEEEcc
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFD---ARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~---~e~l~~l~~~GvnrvsiGv 181 (471)
++...+++...-.++..+.+.++.+.-- -+.++.++++|+.++++..
T Consensus 79 ~L~~~L~~~~~~~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~t 128 (129)
T TIGR02801 79 ELLAEIAAALAANPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLIT 128 (129)
T ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEee
Confidence 3334444332223455677777664322 3778888999999998854
No 341
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=54.77 E-value=25 Score=35.62 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=55.1
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC-------eeEeeeecCCCCC--CHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE-------NWSLDLISSLPHQ--TPQMW 232 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~-------~v~~DlI~GlPgq--T~e~~ 232 (471)
++..++..+++|++-|.-.+-.-.. |..-..+++.+--+.+.++|+. .|+=|+.+|.|.- -.+.+
T Consensus 12 D~v~l~~irQ~Gv~gIV~aLh~iP~------g~~W~~~~I~~~k~~ie~~Gl~~~vvESvPvhedIK~g~~~rd~~Ieny 85 (362)
T COG1312 12 DPVTLEDIRQAGVKGVVTALHHIPA------GEVWPVEEILKRKEEIESAGLTWSVVESVPVHEDIKLGTPTRDRYIENY 85 (362)
T ss_pred CCccHHHHHHhCccceeccCCCCCC------CCcCcHHHHHHHHHHHHHcCceEEeecCCCHHHHHHhcCCcHHHHHHHH
Confidence 3445556666687766543332222 4445677777777777777764 1234666777653 35678
Q ss_pred HHHHHHHHhCCCCcEEEEecccc
Q 012112 233 EESLRRTVGAQPKHVSVYDLQVE 255 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y~l~~~ 255 (471)
+++|+.+.+.+++ +-||.+++.
T Consensus 86 ~~tirnLa~~GI~-vvCYNfMpv 107 (362)
T COG1312 86 KQTIRNLARAGIK-VVCYNFMPV 107 (362)
T ss_pred HHHHHHHHhcCCc-EEEeccccc
Confidence 8888888888887 557888754
No 342
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=54.10 E-value=95 Score=32.61 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=67.6
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRT 239 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (471)
..+.++.+.++|+.++.+=+-+-+-.+...++... ..+.+.++++.+++.|+. +..+..-.. .-.++.+.+.++.+
T Consensus 78 ~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~-~~~~~Ed~~-rt~~~~l~~~~~~~ 155 (409)
T COG0119 78 IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLE-VRFSAEDAT-RTDPEFLAEVVKAA 155 (409)
T ss_pred HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeccc-cCCHHHHHHHHHHH
Confidence 34588999999999999977777666666666443 567788889999999976 777666665 66788888889998
Q ss_pred HhCCCCcEEEE
Q 012112 240 VGAQPKHVSVY 250 (471)
Q Consensus 240 ~~l~p~his~y 250 (471)
.+.+++.|++-
T Consensus 156 ~~~ga~~i~l~ 166 (409)
T COG0119 156 IEAGADRINLP 166 (409)
T ss_pred HHcCCcEEEEC
Confidence 98888877653
No 343
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=53.93 E-value=67 Score=35.67 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=83.2
Q ss_pred EEEEEecCCCC-------------CHHHHHHHHHCCCCEEEEcc--CC---------CC-H---HHHH-HcCC-CCCHHH
Q 012112 151 EISMEMDPGTF-------------DARKMEELMDLGVNRVSLGV--QA---------FQ-D---ELLK-SCGR-AHGLKE 200 (471)
Q Consensus 151 eitiE~~P~~l-------------~~e~l~~l~~~GvnrvsiGv--QS---------~~-d---~~L~-~l~R-~~t~~~ 200 (471)
.+-+.++|.++ ++...+.|++.||+-|-++. +| -. | ++.. .+.- --|.+|
T Consensus 52 ~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eD 131 (688)
T TIGR02455 52 SVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEE 131 (688)
T ss_pred CeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHH
Confidence 45566677665 46888999999999987763 33 11 1 1222 2333 348899
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCC-CCCHHHHHH
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP-LPTETQSAN 279 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~-~p~~~~~~~ 279 (471)
+.+.++.+++.|++ |-+||+.+.-+...+ |+..- .-.-+.=.+|...-.|--- +. .++ .|++.+...
T Consensus 132 f~~L~~~Ah~~G~~-vi~DlVpnHTs~ghd-F~lAr----~~~~~Y~g~Y~mvei~~~~-W~-----vwpd~~~~~~~~~ 199 (688)
T TIGR02455 132 LIQLSRMAAAHNAI-TIDDIIPAHTGKGAD-FRLAE----LAHGDYPGLYHMVEIREED-WA-----LLPEVPAGRDAVN 199 (688)
T ss_pred HHHHHHHHHHCCCE-EEEEeCCCCCCCCcc-hHHHh----hcCCCCCCceeeccccccc-cc-----cCCCCCccccccc
Confidence 99999999999998 999999887666555 54332 2223444556443222111 11 111 122233444
Q ss_pred HHHHHHHHHHHCCCceec
Q 012112 280 FYRMASSMLSSAGYRHYE 297 (471)
Q Consensus 280 ~~~~~~~~L~~~Gy~~ye 297 (471)
+-..+.+.|+++||..|.
T Consensus 200 l~~~~~~~L~~~g~i~~~ 217 (688)
T TIGR02455 200 LLPAQCDELKAKHYIVGQ 217 (688)
T ss_pred ccHHHHHHHhhccCcccc
Confidence 566788899999998875
No 344
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=53.84 E-value=50 Score=30.84 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++..|....++...++++.+|.+.. .....++.|.+.|++....
T Consensus 148 IL~~l~~~g~~s~~eia~~l~is~s-tv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 148 VLEVLKAEGEKSVKNIAKKLGKSLS-TISRHLRELEKKGLVEQKG 191 (203)
T ss_pred HHHHHHHcCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEc
Confidence 3444444467899999999999865 4568899999999998753
No 345
>PRK03343 transaldolase; Validated
Probab=53.56 E-value=2.8e+02 Score=28.76 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHcCCC--CCcEEEEEecCCCC--CHHHHHH---HHHC-CCCEEEEccCCCCHHHHHHcCCCCCHHH
Q 012112 129 PPRFVSSILDTLTDKFGLS--LDAEISMEMDPGTF--DARKMEE---LMDL-GVNRVSLGVQAFQDELLKSCGRAHGLKE 200 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~--~~~eitiE~~P~~l--~~e~l~~---l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~ 200 (471)
-.+++...++.+...|... .+..+++|++|..- +++.++. |.+. |-.++-|-|= .| .+
T Consensus 81 a~~di~~AaD~L~p~~e~~~g~~G~VS~EVdp~la~d~e~~i~eA~~L~~~~~~~nv~IKIP-------------aT-~~ 146 (368)
T PRK03343 81 TTADVRNACDVLRPVYEATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAAVDRPNLMIKIP-------------AT-PE 146 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccccccCHHHHHHHHHHHHHhcCCCCEEEEeC-------------CC-HH
Confidence 3456677777777766542 23479999998532 2333333 2222 2223444332 23 35
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCH---HHHHHHHHHHHhCCC
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTP---QMWEESLRRTVGAQP 244 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~---e~~~~~l~~~~~l~p 244 (471)
-.+|++.+.+.|+. +|+.+||.. .|.. +.+.+-++...+.+.
T Consensus 147 Gi~Ai~~L~~~GI~-vn~TliFS~-~Qa~a~~eA~~~Gl~~~~~~G~ 191 (368)
T PRK03343 147 GLPAIEALIAEGIS-VNVTLIFSV-ERYRAVADAYLRGLEKRLAAGH 191 (368)
T ss_pred HHHHHHHHHHCCCc-eeEeeecCH-HHHHHHHHHHHHHHHHHHHcCC
Confidence 67788889889997 999999986 4543 334445555556554
No 346
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=53.55 E-value=25 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
.....+.+|.++||++.... .|..+.+|| ++|
T Consensus 39 avR~alsRl~~~G~L~~~r~---------------------Gr~~~Y~Lt-~~g 70 (70)
T PF07848_consen 39 AVRTALSRLVRRGWLESERR---------------------GRRSYYRLT-ERG 70 (70)
T ss_dssp HHHHHHHHHHHTTSEEEECC---------------------CTEEEEEE--HHH
T ss_pred HHHHHHHHHHHcCceeeeec---------------------CccceEeeC-CCC
Confidence 45678999999999987643 344578996 876
No 347
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=53.45 E-value=2.1e+02 Score=28.22 Aligned_cols=100 Identities=6% Similarity=0.098 Sum_probs=64.0
Q ss_pred CeeEEEEcCCC--CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 114 PLETVFFGGGT--PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 114 ~v~~i~fGGGT--ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
+++.+++.|.| ...|+.++-.++++.+.+... ....+-+-+...+. +-+..+..+++|++.+.+....+..
T Consensus 35 Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~--- 109 (292)
T PRK03170 35 GTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN--GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNK--- 109 (292)
T ss_pred CCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC--CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCC---
Confidence 37888887765 456799999999988877643 33444444433333 3477777888899999887766431
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCCC
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQT 228 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgqT 228 (471)
.+.+++.+-++.+.++ ++. | ++|..|+.|
T Consensus 110 ------~~~~~i~~~~~~ia~~~~~p-v---~lYn~P~~~ 139 (292)
T PRK03170 110 ------PTQEGLYQHFKAIAEATDLP-I---ILYNVPGRT 139 (292)
T ss_pred ------CCHHHHHHHHHHHHhcCCCC-E---EEEECcccc
Confidence 2456666666665544 444 2 466677543
No 348
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=53.44 E-value=2.1e+02 Score=28.81 Aligned_cols=138 Identities=21% Similarity=0.204 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHH-HHHcCCCCCcEEEEEecCCC-CCHHHHH
Q 012112 90 RVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTL-TDKFGLSLDAEISMEMDPGT-FDARKME 167 (471)
Q Consensus 90 ~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l-~~~~~l~~~~eitiE~~P~~-l~~e~l~ 167 (471)
..+...+.+++||+.-.+.. +.+.-.|-.+++.+. +++.+-. ++++. +... ..++.|++-+..++ .-.+.++
T Consensus 101 s~e~la~~~i~Ei~~GidgT--~ikaG~Ik~~~~~~~-it~~E~k-~lrAaa~A~~--~TG~pI~~H~~~g~~~~~e~~~ 174 (308)
T PF02126_consen 101 SVEELADLFIREIEEGIDGT--GIKAGIIKEIGSSNP-ITPLEEK-VLRAAARAHK--ETGAPISTHTGRGTRMGLEQLD 174 (308)
T ss_dssp HHHHHHHHHHHHHHT-STTS--SB-ESEEEEEEBTTB-CEHHHHH-HHHHHHHHHH--HHT-EEEEEESTTGTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCC--ccchhheeEeeccCC-CCHHHHH-HHHHHHHHHH--HhCCeEEEcCCCCCcCHHHHHH
Confidence 45677788888888654321 222334444555543 4654433 33332 2221 12356777776666 5689999
Q ss_pred HHHHCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee----cCCCC------CCHHHHHHH
Q 012112 168 ELMDLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI----SSLPH------QTPQMWEES 235 (471)
Q Consensus 168 ~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI----~GlPg------qT~e~~~~~ 235 (471)
.|++.|++ ||.+|=.. +..+.+. ++.+-+.|.. |++|.+ +|.+. .+.+.-.+.
T Consensus 175 il~e~Gv~~~rvvigH~D----------~~~D~~y----~~~la~~G~~-l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~ 239 (308)
T PF02126_consen 175 ILEEEGVDPSRVVIGHMD----------RNPDLDY----HRELADRGVY-LEFDTIGREFSGKDKNPRVGYPPDEERIEL 239 (308)
T ss_dssp HHHHTT--GGGEEETSGG----------GST-HHH----HHHHHHTT-E-EEETTTT-B-TTTTTCHSCTTS-HHHHHHH
T ss_pred HHHHcCCChhHeEEeCCC----------CCCCHHH----HHHHHhcCCE-EEecCCcccccCcccCccCCCCCHHHHHHH
Confidence 99999986 89988222 2233332 3334456885 999988 45542 566777788
Q ss_pred HHHHHhCCC-CcEE
Q 012112 236 LRRTVGAQP-KHVS 248 (471)
Q Consensus 236 l~~~~~l~p-~his 248 (471)
|..+++.+- ++|-
T Consensus 240 l~~L~~~Gy~~qIl 253 (308)
T PF02126_consen 240 LKELIEEGYADQIL 253 (308)
T ss_dssp HHHHHHTTTGGGEE
T ss_pred HHHHHHcCCcCcEE
Confidence 888888873 4553
No 349
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=53.26 E-value=47 Score=33.05 Aligned_cols=114 Identities=8% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCC
Q 012112 95 IQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174 (471)
Q Consensus 95 v~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv 174 (471)
++.-++-.+.+.+.+ .+.||+-++.++. +++.++.+.+...++ .+-+-++|.....-.++.|.++|+
T Consensus 168 ~~eAi~Ra~ay~eAG-----AD~ifv~~~~~~~---~ei~~~~~~~~~~~p-----~~pl~~~~~~~~~~~~~eL~~lG~ 234 (285)
T TIGR02320 168 MEDALKRAEAYAEAG-----ADGIMIHSRKKDP---DEILEFARRFRNHYP-----RTPLVIVPTSYYTTPTDEFRDAGI 234 (285)
T ss_pred HHHHHHHHHHHHHcC-----CCEEEecCCCCCH---HHHHHHHHHhhhhCC-----CCCEEEecCCCCCCCHHHHHHcCC
Q ss_pred CEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHH
Q 012112 175 NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236 (471)
Q Consensus 175 nrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l 236 (471)
+|||.|...+ ......+.++.+.+++.|-..--.+.| ++.+++.+.+
T Consensus 235 ~~v~~~~~~~----------~aa~~a~~~~~~~~~~~g~~~~~~~~~-----~~~~e~~~~~ 281 (285)
T TIGR02320 235 SVVIYANHLL----------RAAYAAMQQVAERILEHGRLVEVEDKC-----APIKEIFRLI 281 (285)
T ss_pred CEEEEhHHHH----------HHHHHHHHHHHHHHHHcCCcccccccc-----CCHHHHHHhc
No 350
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=53.19 E-value=2.4e+02 Score=28.46 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=64.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCC----CC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC
Q 012112 121 GGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG----TF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 121 GGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~----~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~ 195 (471)
|+|..-+-+|+.+.++++.+++..++ .+++-++.+ .. ..+.++.+.++|+..|.+---+ ...+..+
T Consensus 109 g~Gs~ll~~p~~~~eiv~av~~a~d~----pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt-----~~~~~~G 179 (321)
T PRK10415 109 LAGSALLQYPDLVKSILTEVVNAVDV----PVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT-----RACLFNG 179 (321)
T ss_pred CcccHHhcCHHHHHHHHHHHHHhcCC----ceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCc-----cccccCC
Confidence 45565566789999999999887543 466555432 22 2367778899999999775322 1112122
Q ss_pred -CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 196 -HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 196 -~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
.+. +.+..+++. +++-+|..=-=.|.++..+-++ ..+.+.|.+-.-.
T Consensus 180 ~a~~----~~i~~ik~~----~~iPVI~nGgI~s~~da~~~l~---~~gadgVmiGR~~ 227 (321)
T PRK10415 180 EAEY----DSIRAVKQK----VSIPVIANGDITDPLKARAVLD---YTGADALMIGRAA 227 (321)
T ss_pred CcCh----HHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHh---ccCCCEEEEChHh
Confidence 222 344455443 2333333322246676665553 3578877766533
No 351
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.15 E-value=45 Score=33.09 Aligned_cols=62 Identities=18% Similarity=0.397 Sum_probs=46.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
.+.|.+-. ++++.+.++.+.+++.. . ...+.+|+.- .++.+.++.+.+.|++.||+|-=+.+
T Consensus 203 aDiI~LDn-----~~~e~l~~~v~~l~~~~-~--~~~~~leaSG-GI~~~ni~~yA~tGvD~Is~galt~s 264 (278)
T PRK08385 203 ADIIMLDN-----MTPEEIREVIEALKREG-L--RERVKIEVSG-GITPENIEEYAKLDVDVISLGALTHS 264 (278)
T ss_pred cCEEEECC-----CCHHHHHHHHHHHHhcC-c--CCCEEEEEEC-CCCHHHHHHHHHcCCCEEEeChhhcC
Confidence 56666643 47789999998887642 1 1257788764 68999999999999999999976543
No 352
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.78 E-value=1.1e+02 Score=31.52 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+..+++++... +++.|.+. +|-..+.|.++.++++.+++.++ .++.+-++ .+.-....+..+
T Consensus 141 ~~~l~~~~~~~~~~--------Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~----v~l~~H~HNd~GlA~ANalaA~ 207 (365)
T TIGR02660 141 PDFLVELAEVAAEA--------GADRFRFA-DTVGILDPFSTYELVRALRQAVD----LPLEMHAHNDLGMATANTLAAV 207 (365)
T ss_pred HHHHHHHHHHHHHc--------CcCEEEEc-ccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHH
Confidence 34555555555432 14567775 46677888888888888887653 24444443 322355556655
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH-HHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV-KLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~-~~~G~~ 214 (471)
++|+++|.-.+-- ||.+.......+.+..+ ...|++
T Consensus 208 -~aGa~~vd~tl~G--------iGeraGN~~lE~lv~~L~~~~g~~ 244 (365)
T TIGR02660 208 -RAGATHVNTTVNG--------LGERAGNAALEEVAMALKRLLGRD 244 (365)
T ss_pred -HhCCCEEEEEeec--------cccccccCCHHHHHHHHHHhcCCC
Confidence 6788888655443 34443333344444444 445665
No 353
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=52.70 E-value=31 Score=32.24 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
-+++.||++.+..+-.++.+.+ || ++.+..|.++|++-+++-.|..++ ..+.++.+|+.|.
T Consensus 52 pvV~slR~~~~~~~ffD~HmMV~~P----eq~V~~~a~agas~~tfH~E~~q~--------------~~~lv~~ir~~Gm 113 (224)
T KOG3111|consen 52 PVVESLRKHTGADPFFDVHMMVENP----EQWVDQMAKAGASLFTFHYEATQK--------------PAELVEKIREKGM 113 (224)
T ss_pred HHHHHHHhccCCCcceeEEEeecCH----HHHHHHHHhcCcceEEEEEeeccC--------------HHHHHHHHHHcCC
Confidence 3467777776554434455544 66 688999999999999998877543 5677889999999
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
. +.+-+= ||-..+++..-++ .+|-+ --.+++||-
T Consensus 114 k-~G~alk---PgT~Ve~~~~~~~-----~~D~v--LvMtVePGF 147 (224)
T KOG3111|consen 114 K-VGLALK---PGTPVEDLEPLAE-----HVDMV--LVMTVEPGF 147 (224)
T ss_pred e-eeEEeC---CCCcHHHHHHhhc-----cccEE--EEEEecCCC
Confidence 7 666554 6666665554433 23333 334678873
No 354
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=52.51 E-value=87 Score=32.31 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc-CCCCCHH-------
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC-GRAHGLK------- 199 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l-~R~~t~~------- 199 (471)
.+.+.+++=++.+++.|+-....-+++-+|| +...++.|++.|+ |++-.+...++.. .-+...+
T Consensus 8 ~d~~~l~~~~~~l~~a~~~~~~~~yAvKaN~---~~~il~~l~~~G~-----g~DvaS~~El~~al~~G~~~~~Ii~~gp 79 (379)
T cd06836 8 YDLDGFRALVARLTAAFPAPVLHTFAVKANP---LVPVLRLLAEAGA-----GAEVASPGELELALAAGFPPERIVFDSP 79 (379)
T ss_pred EcHHHHHHHHHHHHHhcCCCcEEEEEEecCC---CHHHHHHHHHcCC-----cEEEcCHHHHHHHHHcCCChhhEEEeCC
Confidence 5777888888888887753122345777788 6899999999884 5666666555432 1112211
Q ss_pred -HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 200 -EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 200 -~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
.-.+-++.+.+.|+ .+++| +.+++++-.+.+.+
T Consensus 80 ~K~~~~L~~ai~~gv-~i~iD--------S~~El~~i~~~a~~ 113 (379)
T cd06836 80 AKTRAELREALELGV-AINID--------NFQELERIDALVAE 113 (379)
T ss_pred CCCHHHHHHHHHCCC-EEEEC--------CHHHHHHHHHHHHH
Confidence 11234445556676 36664 45666555554443
No 355
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=52.49 E-value=1.2e+02 Score=30.03 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCCCH--H---------------HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEE
Q 012112 117 TVFFGGGTPSLVPP--R---------------FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 117 ~i~fGGGTps~l~~--~---------------~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
.+..|||.+..+.- . .+.+.++.+++..+ ...|.+|+. +.+.++...++|++.|-+
T Consensus 142 Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~---~~kIeVEv~----tleea~ea~~~GaDiI~l 214 (277)
T TIGR01334 142 AVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAP---ERKITVEAD----TIEQALTVLQASPDILQL 214 (277)
T ss_pred HHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCC---CCCEEEECC----CHHHHHHHHHcCcCEEEE
Confidence 35578998866532 2 35566667776543 346777764 788888888999998877
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
= ..+.+++.++++.+++..-. +-+- .-| |=|++ ++....+.++|-||+-.++
T Consensus 215 D--------------n~~~e~l~~~v~~l~~~~~~-~~le-asG--GI~~~----ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 215 D--------------KFTPQQLHHLHERLKFFDHI-PTLA-AAG--GINPE----NIADYIEAGIDLFITSAPY 266 (277)
T ss_pred C--------------CCCHHHHHHHHHHHhccCCC-EEEE-EEC--CCCHH----HHHHHHhcCCCEEEeCcce
Confidence 4 57889999999988754332 3221 222 44555 4555678899988877654
No 356
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=52.44 E-value=1.3e+02 Score=29.60 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHH
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANF 280 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~ 280 (471)
+..|.+.++++|.+.|.+.- | .+..+.++.+.+.+++-+.--.|+|..-+.+.....+|+ +.++..++
T Consensus 97 v~nA~rl~ke~GadaVKlEG-----g---~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk----~~~~a~~l 164 (261)
T PF02548_consen 97 VRNAGRLMKEAGADAVKLEG-----G---AEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGK----TAEEAEKL 164 (261)
T ss_dssp HHHHHHHHHTTT-SEEEEEB-----S---GGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CST----SHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEecc-----c---hhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEec----CHHHHHHH
Confidence 44555666667766555432 1 144556777777777655555565554333332222332 56677777
Q ss_pred HHHHHHHHHHCCCceeccccccCCCcchhhhhhhhcCCCEEEEccCccc--c-------cC---C------eEEEcCCCh
Q 012112 281 YRMASSMLSSAGYRHYEISSYGEDGYECKHNLTYWKNKPFYGFGLGSAS--Y-------LG---G------LRFSRPRRM 342 (471)
Q Consensus 281 ~~~~~~~L~~~Gy~~yeis~fa~~g~~~~hn~~yw~~~~ylG~G~gA~s--~-------~~---~------~r~~n~~~~ 342 (471)
++.+. .|+++|---..+-. -|..-.+. ..=--.-|-||+|.|... . ++ + .+|.|....
T Consensus 165 ~~~A~-ale~AGaf~ivlE~--vp~~la~~-It~~l~IPtIGIGaG~~cDGQvLV~~DlLG~~~~~~pkf~k~y~~~~~~ 240 (261)
T PF02548_consen 165 LEDAK-ALEEAGAFAIVLEC--VPAELAKA-ITEALSIPTIGIGAGPGCDGQVLVSHDLLGLFTDFPPKFVKQYANLGEE 240 (261)
T ss_dssp HHHHH-HHHHHT-SEEEEES--BBHHHHHH-HHHHSSS-EEEESS-STSSEEEE-HHHHTTSSSSS--TT---SSTTCSS
T ss_pred HHHHH-HHHHcCccEEeeec--CHHHHHHH-HHHhCCCCEEecCCCCCCCceEEeHhhhhcccCCCCCCcHHHHhhHHHH
Confidence 76654 57888854322211 11111110 000124589999999863 1 11 1 245555432
Q ss_pred --HHHHHHHHHHhcCCCc
Q 012112 343 --KEFVDYVQNLEAGLVD 358 (471)
Q Consensus 343 --~~y~~~~~~~~~g~~~ 358 (471)
+.+.+|.+.+.+|..|
T Consensus 241 ~~~A~~~y~~~V~~g~FP 258 (261)
T PF02548_consen 241 IEEAVKAYANEVKSGSFP 258 (261)
T ss_dssp HHHHHHHHHHHHHTT-SS
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 5577777888888776
No 357
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=51.99 E-value=2.3e+02 Score=27.36 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=64.7
Q ss_pred cEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH----HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC
Q 012112 150 AEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD----ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP 225 (471)
Q Consensus 150 ~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d----~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP 225 (471)
.++.+|+.| ++|.++.-.+..-.++.+-.+.=.+ --|.. ....+.+...++.++++|+. ||+.+= |
T Consensus 63 ~~lNlE~a~---t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv---~~~~~~l~~~i~~l~~~gI~-VSLFiD---P 132 (234)
T cd00003 63 TELNLEMAP---TEEMLEIALEVKPHQVTLVPEKREELTTEGGLDV---AGQAEKLKPIIERLKDAGIR-VSLFID---P 132 (234)
T ss_pred CCEEeccCC---CHHHHHHHHHCCCCEEEECCCCCCCccCCccchh---hcCHHHHHHHHHHHHHCCCE-EEEEeC---C
Confidence 378889877 8999999999999999998765322 22322 22457788899999999997 887431 2
Q ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 226 HQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 226 gqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
. .+.++.+.+.+.+.|-+|.
T Consensus 133 d------~~qi~~A~~~GAd~VELhT 152 (234)
T cd00003 133 D------PEQIEAAKEVGADRVELHT 152 (234)
T ss_pred C------HHHHHHHHHhCcCEEEEec
Confidence 1 3567888999999998886
No 358
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=51.60 E-value=2e+02 Score=28.00 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCCEEEEccCCCCH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
+..+.+.+.|.+-|-+|.+|..+
T Consensus 27 ~~a~~~~~~GA~iIDIG~~st~p 49 (257)
T TIGR01496 27 AHAERMLEEGADIIDVGGESTRP 49 (257)
T ss_pred HHHHHHHHCCCCEEEECCCCCCC
Confidence 44555567788888888777744
No 359
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=51.60 E-value=44 Score=32.18 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC--C--CC---CCHHH
Q 012112 161 FDARKMEELMDLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS--L--PH---QTPQM 231 (471)
Q Consensus 161 l~~e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G--l--Pg---qT~e~ 231 (471)
..++.++.+++.|+| ||-++.+.+.+..-...-.....+.+.++|+.+++.|+. |-+|+--. . ++ .+...
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~-vild~h~~~~w~~~~~~~~~~~~ 100 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIY-VILDLHNAPGWANGGDGYGNNDT 100 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-E-EEEEEEESTTCSSSTSTTTTHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCe-EEEEeccCccccccccccccchh
Confidence 788999999999999 556665444310000000011346788899999999997 88998874 1 11 12222
Q ss_pred ----HHHHHHHHH-hC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 232 ----WEESLRRTV-GA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 232 ----~~~~l~~~~-~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
+.+-+..+. ++ .+.++ .|.+.=||...-.. ......+.+...+++..+.+.+++.+..+.
T Consensus 101 ~~~~~~~~~~~la~~y~~~~~v~-~~el~NEP~~~~~~----~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 101 AQAWFKSFWRALAKRYKDNPPVV-GWELWNEPNGGNDD----ANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTE-EEESSSSGCSTTST----TTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred hHHHHHhhhhhhccccCCCCcEE-EEEecCCccccCCc----cccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 222222232 22 34444 67887777542110 000111234567889999999999998754
No 360
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=51.46 E-value=91 Score=32.49 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHH
Q 012112 127 LVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKS 191 (471)
Q Consensus 127 ~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~ 191 (471)
+++.+.+++-++.+++.++ ....-+.+-+|| +...++.|++.| .|++-.+...++.
T Consensus 17 v~d~~~i~~~~~~l~~~lp-~~~~~YAvKaN~---~~~il~~l~~~G-----~g~DvaS~gEl~~ 72 (394)
T cd06831 17 VGDLGKIVKKHSQWQTVMA-QIKPFYTVRCNS---TPAVLEILAALG-----TGFACSSKNEMAL 72 (394)
T ss_pred EEEHHHHHHHHHHHHHHCC-CCeEEeeeccCC---CHHHHHHHHHcC-----CCeEeCCHHHHHH
Confidence 3577888888899988885 222345777788 689999999988 3666666665543
No 361
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=51.39 E-value=85 Score=29.81 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHH---HHHHHCCCCEEEEccCCCCHHHHHHcCCCCCH
Q 012112 124 TPSLVPPR--FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKM---EELMDLGVNRVSLGVQAFQDELLKSCGRAHGL 198 (471)
Q Consensus 124 Tps~l~~~--~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l---~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~ 198 (471)
+||++..+ .+..++..+.+.. +.++++|+...+ .++.+ +.|.+.+ .++-+-| +.|.
T Consensus 28 NPsll~k~g~~~~~~~~~i~~~~----~g~vs~qv~~~~-~~~mi~~a~~l~~~~-~~i~iKI-------------P~T~ 88 (213)
T TIGR00875 28 NPSLIAKEGRSFWEVLKEIQEAV----EGPVSAETISLD-AEGMVEEAKELAKLA-PNIVVKI-------------PMTS 88 (213)
T ss_pred CHHHHHhcCCCHHHHHHHHHHhc----CCcEEEEEeeCC-HHHHHHHHHHHHHhC-CCeEEEe-------------CCCH
Confidence 35554432 2334555555443 237898886543 23333 3344443 3344422 3344
Q ss_pred HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 199 KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l 252 (471)
+-.+|++.+++.|+. +++.+||.. .| .-.+.+.|++.||.|-=
T Consensus 89 -~Gl~A~~~L~~~Gi~-v~~T~vfs~-~Q--------a~~Aa~aGa~yispyvg 131 (213)
T TIGR00875 89 -EGLKAVKILKKEGIK-TNVTLVFSA-AQ--------ALLAAKAGATYVSPFVG 131 (213)
T ss_pred -HHHHHHHHHHHCCCc-eeEEEecCH-HH--------HHHHHHcCCCEEEeecc
Confidence 457899999999998 999999965 11 22345578999988863
No 362
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=51.33 E-value=1.5e+02 Score=30.01 Aligned_cols=100 Identities=24% Similarity=0.296 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcC--CC--CCcEEEEEecCCCC-C-HHH-------HHHHHHCCCC--EEEEccCCCCHHHHHHcCCC
Q 012112 131 RFVSSILDTLTDKFG--LS--LDAEISMEMDPGTF-D-ARK-------MEELMDLGVN--RVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~--l~--~~~eitiE~~P~~l-~-~e~-------l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~ 195 (471)
+++...++.+.-.|+ +. .+..+++|++|..- + ++. .+.+.+.|++ |+-|-|=
T Consensus 66 ~~i~~a~D~l~v~~g~~i~~~i~G~VS~EVdprls~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIP------------- 132 (317)
T TIGR00874 66 QQVENALDKLAVNFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKIA------------- 132 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeC-------------
Confidence 566666666665552 11 12369999998532 2 222 2333445654 4544333
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
-| .+-.+|++.+.+.|+. +|+.+||.+ .| ...+.+.|..-||.|-=.+
T Consensus 133 aT-~eGi~A~~~L~~~GI~-vN~TliFS~-~Q--------a~aaa~AGa~~ISPFVgRi 180 (317)
T TIGR00874 133 ST-WEGIRAAEELEKEGIH-CNLTLLFSF-VQ--------AIACAEAKVTLISPFVGRI 180 (317)
T ss_pred CC-HHHHHHHHHHHHCCCc-eeeeeecCH-HH--------HHHHHHcCCCEEEeecchH
Confidence 33 3456788888899997 999999976 22 3345567899999887544
No 363
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.15 E-value=89 Score=33.41 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee-cCCCCCCHHHHHHHH
Q 012112 158 PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI-SSLPHQTPQMWEESL 236 (471)
Q Consensus 158 P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI-~GlPgqT~e~~~~~l 236 (471)
|+++-+..++..++.|++.+-+.- + + ...+.+..+++.+++.|.. +.+-+. -+-|..|.+-+.+..
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd-~--------l---nd~~n~~~ai~~ak~~G~~-~~~~i~yt~sp~~t~~y~~~~a 169 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFD-A--------L---NDPRNIQQALRAVKKTGKE-AQLCIAYTTSPVHTLNYYLSLV 169 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcc-c--------C---CCHHHHHHHHHHHHHcCCE-EEEEEEEEeCCcCcHHHHHHHH
Confidence 455666778888899998776632 2 2 2577788889999999886 332222 246778888888888
Q ss_pred HHHHhCCCCcEEEE
Q 012112 237 RRTVGAQPKHVSVY 250 (471)
Q Consensus 237 ~~~~~l~p~his~y 250 (471)
+.+.+++++.|.+-
T Consensus 170 ~~l~~~Gad~I~Ik 183 (468)
T PRK12581 170 KELVEMGADSICIK 183 (468)
T ss_pred HHHHHcCCCEEEEC
Confidence 89999998877554
No 364
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.13 E-value=2e+02 Score=29.33 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCC----CCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGT----FDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVYE 203 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~----l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ 203 (471)
..-++..++.+++.. .....=++|..+..+ .-+|..+.+++++ ++-|.+.+-+-+..-.+ -....+.+.+
T Consensus 121 n~g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~---~~~~~~~~~e 196 (344)
T PRK05286 121 NDGADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLR---DLQYGEALDE 196 (344)
T ss_pred CHhHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcc---cccCHHHHHH
Confidence 344666777776643 222234555444322 3356667776666 88888887554432111 1345666666
Q ss_pred HHHHHHHc-C-----CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 204 AIEIVKLC-G-----VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 204 ai~~~~~~-G-----~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l 252 (471)
.++.++++ + +. |.+=+ . |+.|.+++.+..+.+.+.+++-|.+..-
T Consensus 197 iv~aVr~~~~~~~~~~P-V~vKl--s-p~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 197 LLAALKEAQAELHGYVP-LLVKI--A-PDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred HHHHHHHHHhccccCCc-eEEEe--C-CCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 66666664 3 44 33333 2 5677888999999999999999988873
No 365
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=51.02 E-value=2.9e+02 Score=29.09 Aligned_cols=142 Identities=12% Similarity=0.105 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHH----HHHC-CCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 126 SLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEE----LMDL-GVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 126 s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~----l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
..++.+++.++++.|++..++ .+|.+.. +|=.++.+.|+. +++. +|.+|.||--.-. .+.-..|
T Consensus 136 ~~ls~eei~~~i~yI~~~p~I---~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pv-----v~P~RIT-- 205 (417)
T TIGR03820 136 SIPSKEQILEGIEYIRNTPQI---RDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPV-----VLPQRIT-- 205 (417)
T ss_pred ccCCHHHHHHHHHHHHhcCCC---CEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccc-----ccccccC--
Confidence 446778999999999875333 3677765 787777756555 3343 7787887744210 0000111
Q ss_pred HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHH
Q 012112 200 EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSAN 279 (471)
Q Consensus 200 ~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~ 279 (471)
.+.++.+++++. +.+..=++.|.|.-++..+.++.+.+.|+. +..- |.+- +|. .+..+
T Consensus 206 --~ell~~Lk~~~~--~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~---l~nQ-----sVLL----kGV------ND~~~ 263 (417)
T TIGR03820 206 --DELVAILKKHHP--VWLNTHFNHPREITASSKKALAKLADAGIP---LGNQ-----SVLL----AGV------NDCPR 263 (417)
T ss_pred --HHHHHHHHhcCC--eEEEEeCCChHhChHHHHHHHHHHHHcCCE---EEee-----ceEE----CCc------CCCHH
Confidence 134455566653 445556788999889999999999998854 2221 2221 221 11223
Q ss_pred HHHHHHHHHHHCCCceeccc
Q 012112 280 FYRMASSMLSSAGYRHYEIS 299 (471)
Q Consensus 280 ~~~~~~~~L~~~Gy~~yeis 299 (471)
......+.|.+.|-..|-+.
T Consensus 264 ~l~~L~~~L~~~gV~PYYl~ 283 (417)
T TIGR03820 264 IMKKLVHKLVANRVRPYYLY 283 (417)
T ss_pred HHHHHHHHHHHCCCeeceee
Confidence 34455567889999988543
No 366
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.93 E-value=1.7e+02 Score=29.17 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=69.3
Q ss_pred eEEEEcCCCCCCCCHH-----------------HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEE
Q 012112 116 ETVFFGGGTPSLVPPR-----------------FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVS 178 (471)
Q Consensus 116 ~~i~fGGGTps~l~~~-----------------~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrvs 178 (471)
..+..|||.+.-+.-. .+.+.++.+++..+ ...|.+|+. +.+.++...++|++.|-
T Consensus 142 ~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~---~~kIeVEv~----tleqa~ea~~agaDiI~ 214 (284)
T PRK06096 142 QAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAP---EKKIVVEAD----TPKEAIAALRAQPDVLQ 214 (284)
T ss_pred HHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCC---CCCEEEECC----CHHHHHHHHHcCCCEEE
Confidence 3467899988643321 13344555555433 234777764 78888888899999998
Q ss_pred EccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 179 LGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 179 iGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
+ -..+.+++.++++.+++.+-. +-+- .-| |=|++ ++....+.++|-||+-.++.
T Consensus 215 L--------------Dn~~~e~l~~av~~~~~~~~~-~~le-aSG--GI~~~----ni~~yA~tGvD~Is~gal~~ 268 (284)
T PRK06096 215 L--------------DKFSPQQATEIAQIAPSLAPH-CTLS-LAG--GINLN----TLKNYADCGIRLFITSAPYY 268 (284)
T ss_pred E--------------CCCCHHHHHHHHHHhhccCCC-eEEE-EEC--CCCHH----HHHHHHhcCCCEEEECcccc
Confidence 8 245678888888887643222 3221 122 44554 55666788999998877643
No 367
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=50.72 E-value=31 Score=34.65 Aligned_cols=58 Identities=19% Similarity=0.325 Sum_probs=36.8
Q ss_pred EcCCCCCC-CCHHHHHHHHHHHHHHcCCCCCcE--EEEE-ecCCCCCHHHHHHHHHCCCCEEEE
Q 012112 120 FGGGTPSL-VPPRFVSSILDTLTDKFGLSLDAE--ISME-MDPGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 120 fGGGTps~-l~~~~l~~ll~~l~~~~~l~~~~e--itiE-~~P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+|||.|-. .+..+-++++..|.+..+-..... +.+- ++| +|+|.++.+++.|+.|+-.
T Consensus 98 IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~P--lTEea~~qikkd~v~r~Va 159 (395)
T KOG1321|consen 98 IGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHP--LTEEALEQIKKDGVTRAVA 159 (395)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCc--ccHHHHHHHHhcCceeEEe
Confidence 89999943 233455666666665543222222 2222 244 8999999999999999643
No 368
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=50.43 E-value=2.8e+02 Score=27.88 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=35.6
Q ss_pred eeEEEEcCCC--CCCCCHHHHHHHH-HHHHHHcC-CCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEc
Q 012112 115 LETVFFGGGT--PSLVPPRFVSSIL-DTLTDKFG-LSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLG 180 (471)
Q Consensus 115 v~~i~fGGGT--ps~l~~~~l~~ll-~~l~~~~~-l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiG 180 (471)
++-|++.+.. .++++++.++++. ..+++.+. +... ...+-.- + -+...++.+++.|++-+|+.
T Consensus 194 ad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~c-G-~~~~~l~~~~~~g~d~~~~d 260 (339)
T PRK06252 194 ADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHIC-G-DLTSILEEMADCGFDGISID 260 (339)
T ss_pred CCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEEC-C-CchHHHHHHHhcCCCeeccC
Confidence 6667776543 3488998877664 23333221 1111 1222211 2 24668999999999987764
No 369
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=50.41 E-value=86 Score=32.66 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHcCC-CCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 128 VPPRFVSSILDTLTDKFGL-SLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l-~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
++.+.+.+=++.+++.++- ....-..+-+|| ....++.+.+.|+ .+.+-|..
T Consensus 30 ~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~---~~~vl~~l~~~G~---g~dvaS~~ 82 (417)
T TIGR01048 30 YDEETIRERFRAYKEAFGGAYSLVCYAVKANS---NLALLRLLAELGS---GFDVVSGG 82 (417)
T ss_pred EeHHHHHHHHHHHHHhhCCCCceEEEEehhCC---CHHHHHHHHHcCC---cEEEeCHH
Confidence 5778888888888887753 112344555676 7899999999984 34444443
No 370
>PLN02433 uroporphyrinogen decarboxylase
Probab=49.98 E-value=1.8e+02 Score=29.58 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=37.4
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHH--------HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSIL--------DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll--------~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.+.+.+...+++++++++++. +.+++.. .+..+.+-. ..- ...++.+++.|++-+|++-
T Consensus 193 a~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~---~~~~~ilh~--cG~-~~~~~~~~~~~~~~i~~d~ 261 (345)
T PLN02433 193 AQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARH---PDVPLILYA--NGS-GGLLERLAGTGVDVIGLDW 261 (345)
T ss_pred CCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEe--CCC-HHHHHHHHhcCCCEEEcCC
Confidence 56676777788899998877553 3443321 112233322 112 3789999999999877643
No 371
>PRK09989 hypothetical protein; Provisional
Probab=49.98 E-value=2.4e+02 Score=27.03 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=61.3
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC-CC-C------------CC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS-LP-H------------QT 228 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G-lP-g------------qT 228 (471)
++.++.++++|++-|.+..- -.++.+ +..+.+.+.|+.-..+..-++ ++ + +.
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~-----------~~~~~~---~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFP-----------YDYSTL---QIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEA 83 (258)
T ss_pred HHHHHHHHHcCCCEEEECCc-----------ccCCHH---HHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHH
Confidence 58999999999999988431 124444 445567788987333232111 11 1 11
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+++.+.++.+.+++.+.|.+.+-.+..+..- ....+...+.+..+.+..++.|-.
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~----------~~~~~~~~~~l~~l~~~a~~~gv~ 139 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVPAGEDA----------ERYRAVFIDNLRYAADRFAPHGKR 139 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCCCCCCH----------HHHHHHHHHHHHHHHHHHHhcCCE
Confidence 34577777788899998886543211111100 000123456667777888888865
No 372
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=49.97 E-value=1.4e+02 Score=32.23 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecC--CCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP--GTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P--~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.|.+. +|-..+.|.++.+++..+++.++-..+..+.+-++- +.-....+..+ ++|++.|...+
T Consensus 253 ad~I~l~-DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi-~aGa~~Vd~Tv 319 (503)
T PLN03228 253 ATSVGIA-DTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGI-CAGARQVEVTI 319 (503)
T ss_pred CCEEEEe-cCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHH-HhCCCEEEEec
Confidence 4556665 366667777777777777766532122334433332 12244555555 66777776533
No 373
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=49.92 E-value=2.4e+02 Score=27.03 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=63.0
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe-eeecC-----------CCC---
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL-DLISS-----------LPH--- 226 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~-DlI~G-----------lPg--- 226 (471)
-++.++.++++|++.|.+... + ..+ ..+..+.+++.|++ ++. .+-+| .|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~-~----------~~~---~~~~~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFP-Y----------DYD---IEELKQVLASNKLE-HTLHNLPAGDWAAGERGIACIPGREE 81 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCC-C----------CCC---HHHHHHHHHHcCCc-EEEEcCCCCccccCcCccccCCCcHH
Confidence 357899999999999998531 1 123 44444567788998 443 21111 111
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCC-CHHHHHHHHHHHHHHHHHCCCc-eecc
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLP-TETQSANFYRMASSMLSSAGYR-HYEI 298 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p-~~~~~~~~~~~~~~~L~~~Gy~-~yei 298 (471)
+..+.+++.++.+.+++.+.|.+..-...++ .... .-+...+....+.+..++.|.. -+|.
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~-----------~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINCLVGKTPAG-----------FSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCCCCCCC-----------CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1235578888888999999886532111000 0000 0122344556667777788865 3453
No 374
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=49.77 E-value=77 Score=30.66 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHH-HcCCCCCHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK-SCGRAHGLKEVYEAIEI 207 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~-~l~R~~t~~~~~~ai~~ 207 (471)
..+++..|.+.+. .++.+|++| ++|.++...+..-+.+.+-.+.=.+-.=. -+.=....+.+..+++.
T Consensus 51 ~d~Dv~~L~~~~~--------~~lNlE~a~---t~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~ 119 (239)
T PF03740_consen 51 QDRDVRRLRELVK--------TPLNLEMAP---TEEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKR 119 (239)
T ss_dssp -HHHHHHHHHH-S--------SEEEEEEES---SHHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHcc--------cCEEeccCC---CHHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHH
Confidence 4455555544443 368999988 69999999999999999987653221111 01112236889999999
Q ss_pred HHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 208 VKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 208 ~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
++++|+. ||+.+= --.+.++.+.+++.+.|-+|.
T Consensus 120 L~~~gIr-vSLFiD---------P~~~qi~~A~~~Gad~VELhT 153 (239)
T PF03740_consen 120 LKDAGIR-VSLFID---------PDPEQIEAAKELGADRVELHT 153 (239)
T ss_dssp HHHTT-E-EEEEE----------S-HHHHHHHHHTT-SEEEEET
T ss_pred HHhCCCE-EEEEeC---------CCHHHHHHHHHcCCCEEEEeh
Confidence 9999997 887442 124568888999999999986
No 375
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=49.71 E-value=42 Score=37.22 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=53.2
Q ss_pred EEEEecCCCCCH--------HH-HHHHHHCCCCEEEE-ccCCCC--------HHHHHHcC-CCCCHHHHHHHHHHHHHcC
Q 012112 152 ISMEMDPGTFDA--------RK-MEELMDLGVNRVSL-GVQAFQ--------DELLKSCG-RAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 152 itiE~~P~~l~~--------e~-l~~l~~~Gvnrvsi-GvQS~~--------d~~L~~l~-R~~t~~~~~~ai~~~~~~G 212 (471)
+--|+++.+.+. ++ +..|+++|||.|.| .|..+. ..-.-.+. +--+.++..+.|+.+++.|
T Consensus 140 ~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~G 219 (613)
T TIGR01515 140 SIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAG 219 (613)
T ss_pred eEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCC
Confidence 456777776652 45 49999999999988 444331 11122233 2337899999999999999
Q ss_pred CCeeEeeeecCCCCC
Q 012112 213 VENWSLDLISSLPHQ 227 (471)
Q Consensus 213 ~~~v~~DlI~GlPgq 227 (471)
+. |-+|++++.=+.
T Consensus 220 i~-VilD~V~NH~~~ 233 (613)
T TIGR01515 220 IG-VILDWVPGHFPK 233 (613)
T ss_pred CE-EEEEecccCcCC
Confidence 98 999999986553
No 376
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=49.71 E-value=45 Score=33.20 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=44.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
++.|-+.- ++++++.+..+.+++.. ..+.+|+. +.++.+.++.+++.|++.||+|-=+
T Consensus 210 aDiI~LDn-----~~~e~l~~av~~~~~~~-----~~~~leaS-GGI~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 210 PDVLQLDK-----FSPQQATEIAQIAPSLA-----PHCTLSLA-GGINLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred CCEEEECC-----CCHHHHHHHHHHhhccC-----CCeEEEEE-CCCCHHHHHHHHhcCCCEEEECccc
Confidence 67777742 57889999888775432 24667776 4699999999999999999999653
No 377
>PRK12928 lipoyl synthase; Provisional
Probab=49.68 E-value=2.4e+02 Score=28.13 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCC--CC----HHHHHHHHHCC-CCEEEEccCCCCHHHHHHcCCC
Q 012112 125 PSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGT--FD----ARKMEELMDLG-VNRVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 125 ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~--l~----~e~l~~l~~~G-vnrvsiGvQS~~d~~L~~l~R~ 195 (471)
|-.++++++.+.++.+.+. ++ .++.+-. +.+. .. .+.++.+++.. -.+|.+ +.++. +++
T Consensus 84 ~~~~~~eei~~~a~~~~~~-G~---keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~----ltp~~---~~~- 151 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAAL-GL---RYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEV----LTPDF---WGG- 151 (290)
T ss_pred CCCCCHHHHHHHHHHHHHC-CC---CEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEE----ecccc---ccC-
Confidence 4446888888888777653 32 3555533 3221 22 36666776653 224433 33311 111
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEe-----eeecC--CCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSL-----DLISS--LPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGE 268 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~-----DlI~G--lPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~ 268 (471)
..+.++.++++|...++. |=++. -|+.|.+++.+.++.+.+++|+ +.+..-.+. |-
T Consensus 152 -----~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~-i~~~s~iIv-----------G~ 214 (290)
T PRK12928 152 -----QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPD-IPTKSGLML-----------GL 214 (290)
T ss_pred -----CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCC-ceecccEEE-----------eC
Confidence 233445555555432221 11111 1678899999999999999875 322221111 11
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCceeccccccCCCc
Q 012112 269 FPLPTETQSANFYRMASSMLSSAGYRHYEISSYGEDGY 306 (471)
Q Consensus 269 ~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~~g~ 306 (471)
-.++++ +....+.|.+.|+..--+..|.+|..
T Consensus 215 --GET~ed----~~etl~~Lrel~~d~v~i~~Yl~p~~ 246 (290)
T PRK12928 215 --GETEDE----VIETLRDLRAVGCDRLTIGQYLRPSL 246 (290)
T ss_pred --CCCHHH----HHHHHHHHHhcCCCEEEEEcCCCCCc
Confidence 113333 44455678889999888899988854
No 378
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=49.68 E-value=76 Score=31.56 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCC
Q 012112 95 IQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174 (471)
Q Consensus 95 v~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv 174 (471)
++.-++-...+.+.+ .+.|| .|.+-+.++++++.++++ ..-.+.+|--.....++. +.|+++||
T Consensus 165 ld~AI~Ra~AY~eAG-----AD~if----~~al~~~e~i~~f~~av~----~pl~~N~t~~g~tp~~~~---~~L~~~Gv 228 (289)
T COG2513 165 LDDAIERAQAYVEAG-----ADAIF----PEALTDLEEIRAFAEAVP----VPLPANITEFGKTPLLTV---AELAELGV 228 (289)
T ss_pred HHHHHHHHHHHHHcC-----CcEEc----cccCCCHHHHHHHHHhcC----CCeeeEeeccCCCCCcCH---HHHHhcCc
Q ss_pred CEEEEccCCC------CHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 175 NRVSLGVQAF------QDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 175 nrvsiGvQS~------~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
+||+.|+=++ -.++++.+.+..+.......+..-++.
T Consensus 229 ~~V~~~~~~~raa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l 271 (289)
T COG2513 229 KRVSYGLTAFRAALKAAEQAAREIRREGTQANVLDKMQTRKEL 271 (289)
T ss_pred eEEEECcHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
No 379
>PRK12376 putative translaldolase; Provisional
Probab=49.65 E-value=74 Score=30.78 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCCCCCHH---HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHH---HHHHHCCCCEEEEccCCCCHHHHHHcCCCCC
Q 012112 124 TPSLVPPR---FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKM---EELMDLGVNRVSLGVQAFQDELLKSCGRAHG 197 (471)
Q Consensus 124 Tps~l~~~---~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l---~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t 197 (471)
+||++..+ .+..++..+.+..+ +.++++|+.-.+ .++.+ +.|.+.+= ++-+ +=+.|
T Consensus 33 NPsll~k~g~~~~~~~~~~i~~~~~---~~~vs~EV~~~d-~~~mv~eA~~l~~~~~-nv~V-------------KIP~T 94 (236)
T PRK12376 33 NPSLMRKAGVTDYKAFAKEVLAEIP---DAPISFEVFADD-LETMEKEAEKIASLGE-NVYV-------------KIPIT 94 (236)
T ss_pred CHHHHHhcCCCCHHHHHHHHHHhcC---CCcEEEEEecCC-HHHHHHHHHHHHHhCC-CeEE-------------EECCc
Confidence 47776644 34556666655543 347999985332 23333 33333332 2322 22334
Q ss_pred H---HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 198 L---KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 198 ~---~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
. .+-.++++.+.+.|+. +|+.+||.. .+....+.....-+++.||.|-
T Consensus 95 ~~~G~~gl~Ai~~L~~~GI~-vn~T~vfs~-----~Qa~~a~~A~ag~ga~yispfv 145 (236)
T PRK12376 95 NTKGESTIPLIKKLSADGVK-LNVTAIFTI-----EQVKEVVDALTPGVPAIVSVFA 145 (236)
T ss_pred CccchhHHHHHHHHHHCCCe-EEEeeecCH-----HHHHHHHHHhcCCCCeEEEEec
Confidence 2 2578899999999998 999999964 2222112221111477888775
No 380
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.64 E-value=37 Score=33.88 Aligned_cols=58 Identities=12% Similarity=0.282 Sum_probs=44.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
++.|.+-- ++++++.+.++.++. .+.+|+. +.++.+.++.+.+.||+.||+|-=+.+.
T Consensus 218 aDiImLDn-----mspe~l~~av~~~~~--------~~~leaS-GGI~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 218 ADIIMLDN-----MSLEQIEQAITLIAG--------RSRIECS-GNIDMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred CCEEEECC-----CCHHHHHHHHHHhcC--------ceEEEEE-CCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 56666642 577888888886652 4677876 4699999999999999999999766543
No 381
>PRK01060 endonuclease IV; Provisional
Probab=49.55 E-value=2.3e+02 Score=27.47 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=58.2
Q ss_pred ecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCe--eEe--eee--cCCCCC--
Q 012112 156 MDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN--WSL--DLI--SSLPHQ-- 227 (471)
Q Consensus 156 ~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~--v~~--DlI--~GlPgq-- 227 (471)
++|-.--++.++.++++|++.|.|-+.+-.. ......+.+++.+.-+.+.+.|+.- +.+ -+. ++-|.+
T Consensus 8 ~~~~~~~~~~l~~~~~~G~d~vEl~~~~p~~----~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~ 83 (281)
T PRK01060 8 VSAAGGLEGAVAEAAEIGANAFMIFTGNPQQ----WKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEI 83 (281)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEECCCCCC----CcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHH
Confidence 3443335688899999999999887653221 1133457777777777888888861 221 111 222332
Q ss_pred ---CHHHHHHHHHHHHhCCCCcEEEE
Q 012112 228 ---TPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 228 ---T~e~~~~~l~~~~~l~p~his~y 250 (471)
+.+.+++.++.+.++++.+|.+.
T Consensus 84 r~~s~~~~~~~i~~A~~lga~~vv~h 109 (281)
T PRK01060 84 LEKSRDFLIQEIERCAALGAKLLVFH 109 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 35578888888899999887764
No 382
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.28 E-value=44 Score=33.03 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=42.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
++.|-+- + ++++.+.++++.++... ..+.+|+.- .++++.++.+.+.|++.||+|-=+.
T Consensus 203 aDiI~LD--n---~~~e~l~~~v~~~~~~~-----~~~~ieAsG-gIt~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 203 ADIVMCD--N---MSVEEIKEVVAYRNANY-----PHVLLEASG-NITLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CCEEEEC--C---CCHHHHHHHHHHhhccC-----CCeEEEEEC-CCCHHHHHHHHHcCCCEEEeChhhc
Confidence 5666653 2 37788888888664322 245677764 5799999999999999999996544
No 383
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=49.10 E-value=2.4e+02 Score=27.19 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=51.6
Q ss_pred EecCCCCC--HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHH
Q 012112 155 EMDPGTFD--ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQM 231 (471)
Q Consensus 155 E~~P~~l~--~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~ 231 (471)
..||-.-. ++.++.++++|++.+.+.=- ..++..+.++.++++|++. ++-+ |.-+.+.
T Consensus 84 y~n~~~~~G~~~fi~~~~~aG~~giiipDl--------------~~ee~~~~~~~~~~~g~~~-----i~~i~P~T~~~~ 144 (242)
T cd04724 84 YYNPILQYGLERFLRDAKEAGVDGLIIPDL--------------PPEEAEEFREAAKEYGLDL-----IFLVAPTTPDER 144 (242)
T ss_pred ecCHHHHhCHHHHHHHHHHCCCcEEEECCC--------------CHHHHHHHHHHHHHcCCcE-----EEEeCCCCCHHH
Confidence 44663222 78899999999999998521 1357888899999999872 2222 4444443
Q ss_pred HHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
++ .+.+...+.| |-.++.++|.
T Consensus 145 i~----~i~~~~~~~v--y~~s~~g~tG 166 (242)
T cd04724 145 IK----KIAELASGFI--YYVSRTGVTG 166 (242)
T ss_pred HH----HHHhhCCCCE--EEEeCCCCCC
Confidence 33 3445455555 6667777774
No 384
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=48.75 E-value=25 Score=33.96 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHH-----HH-HcCCCCCHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDEL-----LK-SCGRAHGLKEVY 202 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~-----L~-~l~R~~t~~~~~ 202 (471)
..+.+..++..+++ .++++|+-++| +.+.++.-++.|+++|.+=-..+-+.. .+ .+ .+.+.
T Consensus 109 ~~~~l~~~i~~L~~-----~gIrvSLFiDP---~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~el-----l~~l~ 175 (239)
T PF03740_consen 109 NRDRLKPVIKRLKD-----AGIRVSLFIDP---DPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEEL-----LERLR 175 (239)
T ss_dssp GHHHHHHHHHHHHH-----TT-EEEEEE-S----HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHH-----HHHHH
T ss_pred CHHHHHHHHHHHHh-----CCCEEEEEeCC---CHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHH-----HHHHH
Confidence 45778888888876 35789999999 599999999999999988654432211 11 11 46778
Q ss_pred HHHHHHHHcCCCeeEeeeecCCCCCCHHHH
Q 012112 203 EAIEIVKLCGVENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 203 ~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~ 232 (471)
++.+.+++.|+. ||. ==||--++...+
T Consensus 176 ~aa~~a~~lGL~-VnA--GHgL~y~N~~~i 202 (239)
T PF03740_consen 176 DAARYAHELGLG-VNA--GHGLNYDNVRPI 202 (239)
T ss_dssp HHHHHHHHTT-E-EEE--ETT--TTTHHHH
T ss_pred HHHHHHHHcCCE-Eec--CCCCCHHHHHHH
Confidence 888899999986 554 345555544433
No 385
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=48.53 E-value=36 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNE 460 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~ 460 (471)
...+.++.|++.|+++..++.+ ...+.+| ++|..+...
T Consensus 47 ~~~~yi~~L~~~Gli~~~~~~~---------------------~~~y~lT-~KG~~fle~ 84 (95)
T COG3432 47 RAQKYIEMLVEKGLIIKQDNGR---------------------RKVYELT-EKGKRFLEK 84 (95)
T ss_pred HHHHHHHHHHhCCCEEeccCCc---------------------cceEEEC-hhHHHHHHH
Confidence 3456799999999877655432 2247896 999999654
No 386
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=47.98 E-value=2.5e+02 Score=27.42 Aligned_cols=78 Identities=15% Similarity=0.033 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.+.+.|++-|-++=-+.-- -..|.++..+.++.+.+.--. .+.+|.|.-+.+.++..+..+.+.+++
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNG--RVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCC--CCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 44444555666665544222110 012445555555554444111 244566665556666666666666666
Q ss_pred CCcEEEE
Q 012112 244 PKHVSVY 250 (471)
Q Consensus 244 p~his~y 250 (471)
++.|.+.
T Consensus 96 ~d~v~~~ 102 (284)
T cd00950 96 ADAALVV 102 (284)
T ss_pred CCEEEEc
Confidence 6655444
No 387
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.77 E-value=2.9e+02 Score=27.37 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=78.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEE-----cc----CCCCHHHHH-H
Q 012112 123 GTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD-ARKMEELMDLGVNRVSL-----GV----QAFQDELLK-S 191 (471)
Q Consensus 123 GTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~-~e~l~~l~~~Gvnrvsi-----Gv----QS~~d~~L~-~ 191 (471)
|..-..+++.+.++++++++... ..+.+-.+|+.-+ .+..+.+.++|++-|.+ |. .+..+. +. .
T Consensus 135 g~~~~~~~~~~~eiv~~vr~~~~----~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~-~~~~ 209 (301)
T PRK07259 135 GMAFGTDPELAYEVVKAVKEVVK----VPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPI-LANV 209 (301)
T ss_pred ccccccCHHHHHHHHHHHHHhcC----CCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCcee-ecCC
Confidence 33333467889999999998753 4577777764322 36677888999988765 21 111110 00 0
Q ss_pred cCC---CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCC
Q 012112 192 CGR---AHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPG 267 (471)
Q Consensus 192 l~R---~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g 267 (471)
.+. .....-..+.+..+++. +++.+| |.=| .|.++..+-+ ..+.+-|+++.-.+. +
T Consensus 210 ~gg~sg~~~~p~~l~~v~~i~~~----~~ipvi-~~GGI~~~~da~~~l----~aGAd~V~igr~ll~-~---------- 269 (301)
T PRK07259 210 TGGLSGPAIKPIALRMVYQVYQA----VDIPII-GMGGISSAEDAIEFI----MAGASAVQVGTANFY-D---------- 269 (301)
T ss_pred cCccCCcCcccccHHHHHHHHHh----CCCCEE-EECCCCCHHHHHHHH----HcCCCceeEcHHHhc-C----------
Confidence 010 00011234455555554 223333 2223 3666665554 467888888764332 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 268 EFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 268 ~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
.+...++-....++|.+.||...
T Consensus 270 ------P~~~~~i~~~l~~~~~~~g~~~i 292 (301)
T PRK07259 270 ------PYAFPKIIEGLEAYLDKYGIKSI 292 (301)
T ss_pred ------cHHHHHHHHHHHHHHHHcCCCCH
Confidence 23344456666788899998643
No 388
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.66 E-value=46 Score=32.57 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=56.4
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCH---------HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH-H
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQD---------ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ-M 231 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d---------~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e-~ 231 (471)
+.+.+..|.+.|++-|.||+=.-|| .-.++|..+.+.+++.+.++.+|+...+ +-+ +++++=+.=.. .
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~-~p~-vlm~Y~N~i~~~G 105 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT-IPI-VLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCE-EEEecccHHhhcC
Confidence 4566778888899999999877443 3566788888999999999999854332 222 12232111111 3
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 012112 232 WEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~ 249 (471)
.++-++.+.+.+++-+-+
T Consensus 106 ~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 106 VERFAADAAEAGVDGLII 123 (258)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 445577778888876654
No 389
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.62 E-value=3e+02 Score=27.52 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=62.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCC----CC-CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC
Q 012112 122 GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG----TF-DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH 196 (471)
Q Consensus 122 GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~----~l-~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~ 196 (471)
||..-+-+++.+.++++.+++..++ .+++-++.+ .. ..+.++.+.++|+..|.+.--+-. . .+
T Consensus 108 ~Gs~l~~~~~~~~ei~~~vr~~~~~----pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~-----~---~~ 175 (319)
T TIGR00737 108 AGSALLRDPDLIGKIVKAVVDAVDI----PVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA-----Q---GY 175 (319)
T ss_pred ccchHhCCHHHHHHHHHHHHhhcCC----CEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc-----c---cC
Confidence 3433334678899999999987654 355555432 22 347778899999999988422111 0 11
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+..-..+.+..+++. +++-+|..=-=.|.+++.+-++ ..+.+.|.+-.
T Consensus 176 ~~~~~~~~i~~i~~~----~~ipvi~nGgI~~~~da~~~l~---~~gad~VmigR 223 (319)
T TIGR00737 176 SGEANWDIIARVKQA----VRIPVIGNGDIFSPEDAKAMLE---TTGCDGVMIGR 223 (319)
T ss_pred CCchhHHHHHHHHHc----CCCcEEEeCCCCCHHHHHHHHH---hhCCCEEEECh
Confidence 111234556666654 2233444322245666655553 35677776654
No 390
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=47.59 E-value=2.6e+02 Score=27.36 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 012112 233 EESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y 250 (471)
.+.++.+.+.|++++.+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~ 140 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN 140 (296)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 345666667777666554
No 391
>PRK12999 pyruvate carboxylase; Reviewed
Probab=47.53 E-value=3.5e+02 Score=32.59 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=71.9
Q ss_pred eeEEEEcCC-CCC----CCCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGG-TPS----LVPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGG-Tps----~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
+.+|=+||| |+. ++..+.. +-++.+++.. ++..+.+-++ |+.+..+.++...+.|++.+-+
T Consensus 571 ~~siE~~ggatfd~~~r~l~e~p~-erl~~~r~~~---~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~ri 646 (1146)
T PRK12999 571 LFSLEMWGGATFDVAYRFLKEDPW-ERLAELREAA---PNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRI 646 (1146)
T ss_pred CCEEEeeCCcchhhhccccCCCHH-HHHHHHHHhC---CCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEE
Confidence 566666665 332 1222222 2345555544 2345555555 7777888899999999998887
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC-eeEeeee--c---CCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE-NWSLDLI--S---SLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~-~v~~DlI--~---GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
. -+.|+ .+.+..+++.++++|.. .+.+... + .-|--|.+-+.+..+.+.+++++.|.+-
T Consensus 647 f-d~lnd-----------~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ik 711 (1146)
T PRK12999 647 F-DSLNW-----------VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIK 711 (1146)
T ss_pred e-ccCCh-----------HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5 35554 34477778888888742 1333322 0 0122477777788888888888766543
No 392
>PRK07360 FO synthase subunit 2; Reviewed
Probab=47.35 E-value=3.4e+02 Score=27.96 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCH----HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDA----RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEV 201 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~----e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~ 201 (471)
++++++.+.++.+.+. +. .++.+-. +|..-+. +.++.+++. + ..+.+.++++.....+.+... ...
T Consensus 91 ls~eeI~~~a~~a~~~-G~---~~i~l~~G~~p~~~~~e~~~~~i~~ik~~-~--~~i~i~a~s~~ei~~~~~~~G-~~~ 162 (371)
T PRK07360 91 LTIAEILEKAAEAVKR-GA---TEVCIQGGLHPAADSLEFYLEILEAIKEE-F--PDIHLHAFSPMEVYFAAREDG-LSY 162 (371)
T ss_pred CCHHHHHHHHHHHHhC-CC---CEEEEccCCCCCCCcHHHHHHHHHHHHHh-C--CCcceeeCCHHHHHHHHhhcC-CCH
Confidence 5666665555554442 22 2444443 4533211 333344431 1 233444444444333332221 123
Q ss_pred HHHHHHHHHcCCCeeEe--eee-------cCCCCC-CHHHHHHHHHHHHhCCCCc
Q 012112 202 YEAIEIVKLCGVENWSL--DLI-------SSLPHQ-TPQMWEESLRRTVGAQPKH 246 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~~--DlI-------~GlPgq-T~e~~~~~l~~~~~l~p~h 246 (471)
.+.++.++++|+..+.- .=+ ...|+. |.++|.++++.+.++|.+-
T Consensus 163 ~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~ 217 (371)
T PRK07360 163 EEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPT 217 (371)
T ss_pred HHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 56778888888875531 000 124764 8888888888888888763
No 393
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=47.29 E-value=78 Score=21.66 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=30.1
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
..++...++.+.+|.+.. .+...++.|.+.|++....
T Consensus 12 ~~~~s~~~l~~~l~~s~~-tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 12 QGKVSVEELAELLGVSEM-TIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred cCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEee
Confidence 467999999999998754 4567899999999998654
No 394
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=47.07 E-value=2.1e+02 Score=28.89 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=37.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHH--------HHHHHHcCCCCCcEE-EEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSIL--------DTLTDKFGLSLDAEI-SMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll--------~~l~~~~~l~~~~ei-tiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.+.+.+.+++++++++++++. +.+++..+ ...+ .+.. + +...++.|++.|++-+|+.-
T Consensus 194 ad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~---~~~ilh~cg--~--~~~~~~~~~~~~~~~~s~d~ 262 (338)
T TIGR01464 194 AQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLP---NVPVILFAK--G--AGHLLEELAETGADVVGLDW 262 (338)
T ss_pred CCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeC--C--cHHHHHHHHhcCCCEEEeCC
Confidence 56677777677899998776543 34443211 1112 2222 2 34689999999999998863
No 395
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=47.05 E-value=54 Score=32.49 Aligned_cols=59 Identities=7% Similarity=0.144 Sum_probs=45.2
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
.++.|-+-. ++++++.+.++.+++.. ..+.+|+. +.++.+.+..+++.|++.||+|-=+
T Consensus 208 GaDiI~lDn-----~~~e~l~~~v~~l~~~~-----~~~~leas-GGI~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 208 SPDILQLDK-----FTPQQLHHLHERLKFFD-----HIPTLAAA-GGINPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CcCEEEECC-----CCHHHHHHHHHHHhccC-----CCEEEEEE-CCCCHHHHHHHHhcCCCEEEeCcce
Confidence 367777753 57889999988886421 24677776 4699999999999999999999643
No 396
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=47.05 E-value=34 Score=37.30 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=51.5
Q ss_pred EEEEecCCCCC--------HHHHHHHHHCCCCEEEEc-cCCCC--------HHHHHHcCC-CCCHHHHHHHHHHHHHcCC
Q 012112 152 ISMEMDPGTFD--------ARKMEELMDLGVNRVSLG-VQAFQ--------DELLKSCGR-AHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 152 itiE~~P~~l~--------~e~l~~l~~~GvnrvsiG-vQS~~--------d~~L~~l~R-~~t~~~~~~ai~~~~~~G~ 213 (471)
+--|+++.+++ .++|..|+++|||.|.|. |..+. ..-.-.+.. --+.++..+.|+.+++.|+
T Consensus 95 viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi 174 (542)
T TIGR02402 95 VIYELHVGTFTPEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGL 174 (542)
T ss_pred EEEEEEhhhcCCCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCC
Confidence 45566666654 267899999999998664 33222 111222332 2378999999999999999
Q ss_pred CeeEeeeecCCCC
Q 012112 214 ENWSLDLISSLPH 226 (471)
Q Consensus 214 ~~v~~DlI~GlPg 226 (471)
. |-+|++++.=+
T Consensus 175 ~-VilD~V~NH~~ 186 (542)
T TIGR02402 175 G-VILDVVYNHFG 186 (542)
T ss_pred E-EEEEEccCCCC
Confidence 8 99999998633
No 397
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=46.97 E-value=42 Score=29.20 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHHHh
Q 012112 402 LCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHAFG 467 (471)
Q Consensus 402 ~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~~ 467 (471)
..+.++.|+..||++...+ |.| +|| +.|..-.|.|+..+..
T Consensus 100 ~rkvlQ~Le~~~~ve~hp~--------------------gGR----~lt-~~GqrdldrIa~~i~~ 140 (143)
T KOG3411|consen 100 ARKVLQALEKMGIVEKHPK--------------------GGR----RLT-EQGQRDLDRIAGQIRE 140 (143)
T ss_pred HHHHHHHHHhCCceeeCCC--------------------Ccc----eeC-cccchhHHHHHHHHHh
Confidence 4568999999999997654 333 786 9999999999988754
No 398
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=46.92 E-value=1.4e+02 Score=32.88 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=55.5
Q ss_pred HHHHHHHCCCC-EEEEccCCCCHHHHHHcCCCCCH----HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHH
Q 012112 165 KMEELMDLGVN-RVSLGVQAFQDELLKSCGRAHGL----KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRT 239 (471)
Q Consensus 165 ~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l~R~~t~----~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (471)
.++..++.|+. ||-+.-=|.+++++.+.| .+. +.+.+-++.+.+.||.++-+.+=---+-.+...++.....+
T Consensus 146 ~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg--~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 146 FLNICKENHTAIRIGVNHGSLSDRIMSRYG--DTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHHHHHHCCCCEEEecCCcCchHHHHHHhC--CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 55666778865 555555677899999876 344 34445566788889998887777777777778888887777
Q ss_pred HhCCC
Q 012112 240 VGAQP 244 (471)
Q Consensus 240 ~~l~p 244 (471)
.+.+.
T Consensus 224 ~~~g~ 228 (611)
T PRK02048 224 EAEGM 228 (611)
T ss_pred HhcCC
Confidence 76553
No 399
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=46.82 E-value=46 Score=32.88 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=47.2
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
.+.|.+-- ++++++.+..+.+ +. ...+.+|+.- .++.+.+..+++.||+.||+|.=+-+...|
T Consensus 209 aDiImLDN-----m~~e~~~~av~~l----~~--~~~~~lEaSG-gIt~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 209 ADIIMLDN-----MSPEELKEAVKLL----GL--AGRALLEASG-GITLENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred CCEEEecC-----CCHHHHHHHHHHh----cc--CCceEEEEeC-CCCHHHHHHHhhcCCCEEEeCccccCCccc
Confidence 56666642 5778888887776 11 1257888874 699999999999999999999877665544
No 400
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=46.75 E-value=4.2e+02 Score=28.86 Aligned_cols=163 Identities=12% Similarity=0.075 Sum_probs=94.2
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHH----------------HHHHHCCCCEEE
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKM----------------EELMDLGVNRVS 178 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l----------------~~l~~~Gvnrvs 178 (471)
+..+-+. -.|..++++.+..+.+ ++. ..++....+++++.+ +.++++|+ .++
T Consensus 192 ~vgitiE-tRPD~i~~e~L~~L~~-----~G~-----~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~-~v~ 259 (522)
T TIGR01211 192 CVGLTIE-TRPDYCREEHIDRMLK-----LGA-----TRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGL-KVV 259 (522)
T ss_pred eEEEEEE-EcCCcCCHHHHHHHHH-----cCC-----CEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eEE
Confidence 4444453 3687788777655432 232 244444555555444 45566776 344
Q ss_pred EccCCCCHHHHHHcCCCCCHHHHHHHHHHHHH---cCCCeeEeeeecCCCC--------------CCHHHHHHHHHHHHh
Q 012112 179 LGVQAFQDELLKSCGRAHGLKEVYEAIEIVKL---CGVENWSLDLISSLPH--------------QTPQMWEESLRRTVG 241 (471)
Q Consensus 179 iGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~---~G~~~v~~DlI~GlPg--------------qT~e~~~~~l~~~~~ 241 (471)
+-+=-.= -+.|.++..+.++.+.+ .+.+.|++.-..=.|| -|.++..+.+..+.+
T Consensus 260 ~~LM~GL--------Pgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~ 331 (522)
T TIGR01211 260 YHIMPGL--------PGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKR 331 (522)
T ss_pred EEeecCC--------CCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3222111 13467777777777764 5677777766554444 355666666666666
Q ss_pred CCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceec---------cccccCCCcc
Q 012112 242 AQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYE---------ISSYGEDGYE 307 (471)
Q Consensus 242 l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye---------is~fa~~g~~ 307 (471)
.-|..+.++.+. ..-+ .. .++.......+.+.+.+.|.+.||.+-+ ..+|++|+.+
T Consensus 332 ~lp~~i~v~R~q--rdip------~~--~l~ag~~k~~l~~li~~~l~~~G~~~~~ir~reig~~~~~~~~~~~~ 396 (522)
T TIGR01211 332 MMPKWVRIQRIQ--RDIP------AP--LIVAGVKKSNLRELVYRRMKEHGITCRCIRCREVGHQMVKPVQPEEE 396 (522)
T ss_pred hCCcceEEEeec--cCCC------hh--hccCccchHHHHHHHHHHHHHCCCeeccccchhcCcccccccCCCch
Confidence 666677777763 1111 11 1223335667899999999999999543 4567777643
No 401
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=46.55 E-value=1.7e+02 Score=28.44 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=50.7
Q ss_pred CcEEEEEecCCCC--CHHHH---HHHHHCC-CCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec
Q 012112 149 DAEISMEMDPGTF--DARKM---EELMDLG-VNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS 222 (471)
Q Consensus 149 ~~eitiE~~P~~l--~~e~l---~~l~~~G-vnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~ 222 (471)
+..+++|+.|... .++.+ +.|.+.. -.++-+-|=. ..+-.+|++.+.+.|+. +|+.+||
T Consensus 84 ~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPa--------------T~~Gl~A~~~L~~~GI~-vn~T~vf 148 (252)
T cd00439 84 DGRVSVEVSARLADDTQGMVEAAKYLSKVVNRRNIYIKIPA--------------TAEGIPAIKDLIAAGIS-VNVTLIF 148 (252)
T ss_pred CCeEEEEEeccccCCHHHHHHHHHHHHHhcCcccEEEEeCC--------------CHHHHHHHHHHHHCCCc-eeeeeec
Confidence 4589999998322 22332 3333332 1244443322 23567899999999998 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 223 SLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 223 GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
.+ .| ...+.+.+++.||.|-=.+
T Consensus 149 s~-~Q--------a~~aa~Aga~~ispfvgRi 171 (252)
T cd00439 149 SI-AQ--------YEAVADAGTSVASPFVSRI 171 (252)
T ss_pred CH-HH--------HHHHHHcCCCEEEEeccHH
Confidence 75 22 2334556788888886443
No 402
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=46.32 E-value=61 Score=23.66 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=35.1
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecC
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDE 420 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~ 420 (471)
++.-|....-+..+++.+.||++.. ....-|..|.+.|++....|
T Consensus 5 Il~~l~~~~~~s~~ela~~~~VS~~-TiRRDl~~L~~~g~i~r~~G 49 (57)
T PF08220_consen 5 ILELLKEKGKVSVKELAEEFGVSEM-TIRRDLNKLEKQGLIKRTHG 49 (57)
T ss_pred HHHHHHHcCCEEHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEcC
Confidence 3444555667999999999999864 46677899999999987654
No 403
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=46.31 E-value=2.8e+02 Score=27.24 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
|.++..+.++.+.+.--. .+.+|.|.-..+.++..+..+.+.+.+++.|.+.
T Consensus 49 s~~Er~~~~~~~~~~~~~--~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 49 SHEEHKKVIEFVVDLVNG--RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred CHHHHHHHHHHHHHHhCC--CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 344444444444433111 2345566655555555555566666666655543
No 404
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=46.04 E-value=44 Score=33.48 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=41.4
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
.+.|-+- + ++++.+.++++.++. .+.+|+. +.++.+.++.+++.|++.||+|-=+-
T Consensus 229 aDiI~LD--n---~s~e~~~~av~~~~~--------~~~ieaS-GGI~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 229 ADIIMLD--N---FTTEQMREAVKRTNG--------RALLEVS-GNVTLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred CCEEEeC--C---CChHHHHHHHHhhcC--------CeEEEEE-CCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 4556653 2 356788887775532 4677876 46999999999999999999996543
No 405
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=45.98 E-value=52 Score=27.02 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 402 LCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 402 ~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
+-+.+.+|+++|||...... +..+.|.-++.+| ++|..+.++....+
T Consensus 42 lY~~L~rLe~~GlI~~~~~~----------------~~~~~~rk~y~iT-~~Gr~~l~~~~~~~ 88 (100)
T TIGR03433 42 LYPALHRLERRGWIAAEWGE----------------SENNRRAKFYRLT-AAGRKQLAAETESW 88 (100)
T ss_pred HHHHHHHHHHCCCeEEEeee----------------cCCCCCceEEEEC-HHHHHHHHHHHHHH
Confidence 45789999999999863100 0012222478997 99999998875543
No 406
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.94 E-value=2.2e+02 Score=28.42 Aligned_cols=111 Identities=10% Similarity=0.186 Sum_probs=69.7
Q ss_pred eEEEEcCCCCCCCC--------HHH------HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 116 ETVFFGGGTPSLVP--------PRF------VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 116 ~~i~fGGGTps~l~--------~~~------l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
..+..|||.|--++ ..+ +.+.+..+++.++. ...|.+|++ |.+.+....++|++.|-++
T Consensus 151 ~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~--~~~I~VEv~----tleea~eA~~~GaD~I~LD- 223 (288)
T PRK07428 151 YATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPY--PLTIEVETE----TLEQVQEALEYGADIIMLD- 223 (288)
T ss_pred HHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCC--CCEEEEECC----CHHHHHHHHHcCCCEEEEC-
Confidence 45778999864333 222 23344455555442 234555532 5666777779999999998
Q ss_pred CCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 182 QAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 182 QS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
..+.+++.++++.+++..- ++-+-.+= |=|.+ ++....+.++|.|++-.++.
T Consensus 224 -------------n~~~e~l~~av~~~~~~~~-~i~leAsG---GIt~~----ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 224 -------------NMPVDLMQQAVQLIRQQNP-RVKIEASG---NITLE----TIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred -------------CCCHHHHHHHHHHHHhcCC-CeEEEEEC---CCCHH----HHHHHHHcCCCEEEEchhhh
Confidence 5677888899988876422 24333332 44554 45556789999999887654
No 407
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=45.70 E-value=44 Score=24.10 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
.++.-|....|+...++.+.++.+-. .....++.|++.|||+..
T Consensus 7 ~iL~~l~~~~~~~~~~la~~~~~~~~-~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 7 RILRILYENGGITQSELAEKLGISRS-TVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTS-HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCChh-HHHHHHHHHHHCCCEEec
Confidence 44556677889999999999998854 467789999999999865
No 408
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=45.69 E-value=2.6e+02 Score=28.31 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=38.1
Q ss_pred CeeEEEEcCCCCCCCCHHHHHHHH--------HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 114 PLETVFFGGGTPSLVPPRFVSSIL--------DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 114 ~v~~i~fGGGTps~l~~~~l~~ll--------~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
+++-|.+++.+.++++++.++++. +.+++.. +...+-.-+ +. +...++.|++.|++-+|++-
T Consensus 199 Gad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~---~~~~ilh~c--g~-~~~~~~~~~~~~~~~is~d~ 268 (346)
T PRK00115 199 GAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREH---PDVPVILFG--KG-AGELLEAMAETGADVVGLDW 268 (346)
T ss_pred CCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEc--CC-cHHHHHHHHhcCCCEEeeCC
Confidence 366777777777899998877553 3333221 011122111 22 44578889999999998873
No 409
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.24 E-value=1.2e+02 Score=29.45 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=66.6
Q ss_pred ecCCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee------eecCCCCC-
Q 012112 156 MDPGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD------LISSLPHQ- 227 (471)
Q Consensus 156 ~~P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D------lI~GlPgq- 227 (471)
+-|..++ .|+|..-|++|++.|.+.|.-.|++. .++ .-+.++..+.++.+.+.|+.--++- +=+|--.+
T Consensus 13 Alp~~~sW~erl~~AK~~GFDFvEmSvDEsDeRL-aRL--DWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~ 89 (287)
T COG3623 13 ALPNGFSWLERLALAKELGFDFVEMSVDESDERL-ARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEA 89 (287)
T ss_pred hccCCCCHHHHHHHHHHcCCCeEEEeccchHHHH-Hhc--CCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHH
Confidence 3466665 59999999999999999997755543 322 3578889999999999998722221 12333232
Q ss_pred ----CHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 228 ----TPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 228 ----T~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
..+-+++.++.+.++|+..|.+-.|-+
T Consensus 90 ~r~~aleiM~KaI~LA~dLGIRtIQLAGYDV 120 (287)
T COG3623 90 TRQQALEIMEKAIQLAQDLGIRTIQLAGYDV 120 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeEeecccee
Confidence 234566777788889999888766654
No 410
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=45.13 E-value=65 Score=35.13 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCCEEEEcc--CCC------CHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAF------QDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~------~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
++|..|+++||+.|-|.. +|. +..-...+... .+.+++.+.++.|++.|++ |-+|+++..=+..-.-+++
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~-vilD~v~NH~~~~~~~f~~ 109 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIK-IMLDMVFNHTSTEHEWFKK 109 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCE-EEEEECccccccchHHHHH
Confidence 556677777777775543 111 11112223332 3789999999999999998 9999999876554433443
Q ss_pred H
Q 012112 235 S 235 (471)
Q Consensus 235 ~ 235 (471)
.
T Consensus 110 ~ 110 (543)
T TIGR02403 110 A 110 (543)
T ss_pred h
Confidence 3
No 411
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=44.91 E-value=46 Score=33.56 Aligned_cols=97 Identities=14% Similarity=0.237 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC-------CHH-HHH---------
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF-------QDE-LLK--------- 190 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~-------~d~-~L~--------- 190 (471)
++++++.++...+-+.|++ ++|| +.++++..+.+...--. .++|-. +++ +.+
T Consensus 273 ~s~~~L~dlY~~~~k~yPi-----vSiE---DPFdqdDw~~w~~~~~~---~~iqiVgDDLtvTnpkri~~Ai~~k~cN~ 341 (433)
T KOG2670|consen 273 LSGDQLADLYKSFIKDYPI-----VSIE---DPFDQDDWEAWSKFFKE---VGIQIVGDDLTVTNPKRIATAIEEKACNA 341 (433)
T ss_pred cCHHHHHHHHHHHHhcCCe-----eeec---CCcchhhHHHHHHHhhc---cceEEecCcccccCHHHHHHHHHHhhccc
Confidence 6788898887766666553 7887 55888888777763111 333322 222 222
Q ss_pred ---HcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHH
Q 012112 191 ---SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRT 239 (471)
Q Consensus 191 ---~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (471)
+++...|..+..+|++.++++|.. |-+ ----|||.+.|..+|---
T Consensus 342 LLlKvNQIGtvtEsiea~~~a~~~gwg-vmv---SHRSGETeDtFIaDL~VG 389 (433)
T KOG2670|consen 342 LLLKVNQIGTVTESIEAAKLARSAGWG-VMV---SHRSGETEDTFIADLVVG 389 (433)
T ss_pred eEeeccccccHHHHHHHHHHHHhcCce-EEE---eccCCCcccchHHHhhhh
Confidence 235556889999999999999986 322 223599999999887543
No 412
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.83 E-value=3e+02 Score=26.65 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEe----cCCCCC-----------HHHHHHHHHCCCCEEEEccCCC----CHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEM----DPGTFD-----------ARKMEELMDLGVNRVSLGVQAF----QDELL 189 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~----~P~~l~-----------~e~l~~l~~~GvnrvsiGvQS~----~d~~L 189 (471)
+++.+.++.+.+.+. ....+++.+ ++.+.+ ...++..++.|++.+.+-.=+. .++..
T Consensus 43 ~~~~~~~l~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~ 118 (279)
T cd00019 43 KKERAEKFKAIAEEG----PSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGL 118 (279)
T ss_pred CHHHHHHHHHHHHHc----CCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHH
Confidence 567888888888765 122344432 222223 4667778888999876622111 11111
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC---CCCHHHHHHHHHHH
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP---HQTPQMWEESLRRT 239 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP---gqT~e~~~~~l~~~ 239 (471)
+. ..+.+.+.++.+++.|+. +.+--+.+.+ ..|.+++.+.++.+
T Consensus 119 ~~-----~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~~~~~t~~~~~~li~~v 165 (279)
T cd00019 119 KR-----VIEALNELIDKAETKGVV-IALETMAGQGNEIGSSFEELKEIIDLI 165 (279)
T ss_pred HH-----HHHHHHHHHHhccCCCCE-EEEeCCCCCCCCCCCCHHHHHHHHHhc
Confidence 11 134445555556667886 7777666554 34555555554444
No 413
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=44.75 E-value=25 Score=26.18 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=38.2
Q ss_pred EEEEe--cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 152 ISMEM--DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 152 itiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+++++ .|+.+ .+.++.|.+.|+|=.++.+....+ +..=|-.+ ++..++.+.++++||+
T Consensus 4 i~v~v~d~pG~L-a~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~-~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 4 LSVFLENKPGRL-AAVTEILSEAGINIRALSIADTSE---FGILRLIV-SDPDKAKEALKEAGFA 63 (66)
T ss_pred EEEEEcCCCChH-HHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEE-CCHHHHHHHHHHCCCE
Confidence 45554 45433 578889999999988888744333 23333233 4456788889999986
No 414
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=44.69 E-value=66 Score=35.02 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHCCCCEEEEcc--CC------CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QA------FQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS------~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
++|..|+++|||.|-|.. +| ++..-...+... -+.+++.+.|+.|++.|++ |-+|+++..-+..-+-+++
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~-vilD~V~NH~s~~~~~f~~ 110 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMR-VIIDLVLNHTSDQHPWFQE 110 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCE-EEEEeccCcCCCCCHHHHH
Confidence 456666777777665442 11 111222223332 3779999999999999998 9999999987765554444
Q ss_pred H
Q 012112 235 S 235 (471)
Q Consensus 235 ~ 235 (471)
.
T Consensus 111 ~ 111 (539)
T TIGR02456 111 A 111 (539)
T ss_pred H
Confidence 3
No 415
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=44.42 E-value=3.1e+02 Score=29.85 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec--CCCCCCHHHHHHHHHHHHh
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS--SLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~--GlPgqT~e~~~~~l~~~~~ 241 (471)
+..+.|.++||+.|.+|.=+.++... ++++.+.+.+.++..+--.. --|+-+ -+....++.+.+
T Consensus 27 ~Ia~~L~~~GVd~IE~G~p~~s~~d~-------------~~v~~i~~~~~~~~~i~~~~r~~r~~~~-~~~d~~~ea~~~ 92 (526)
T TIGR00977 27 RIAERLDDLGIHYIEGGWPGANPKDV-------------QFFWQLKEMNFKNAKIVAFCSTRRPHKK-VEEDKMLQALIK 92 (526)
T ss_pred HHHHHHHHcCCCEEEEeCCCCChHHH-------------HHHHHHHHhCCCCcEEEEEeeecCCCCC-CchHHHHHHHhc
Confidence 45556666777777777655554422 22333333333211111110 011111 133445666666
Q ss_pred CCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 242 AQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 242 l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+.+.|.+|. +.++++....-+ .+.++..++...+.++++++|+.
T Consensus 93 ~~~~~v~i~~----~~Sd~h~~~~l~----~s~ee~l~~~~~~v~~ak~~g~~ 137 (526)
T TIGR00977 93 AETPVVTIFG----KSWDLHVLEALQ----TTLEENLAMIYDTVAYLKRQGDE 137 (526)
T ss_pred CCCCEEEEEe----CCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCe
Confidence 6666666654 223333221111 23455666666666666666654
No 416
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=44.35 E-value=53 Score=23.78 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=34.2
Q ss_pred HHHHhccccCC--CCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 374 VLMLSFRTARG--VDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 374 ~~~~~Lr~~~g--i~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
.++..|....+ +...++.+.+|.+- ..+...++.|++.|||....
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~~~~-~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLGISK-STVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHTS-H-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCH-HHHHHHHHHHHHCCCEEEeC
Confidence 44555555566 89999999999986 35778899999999998653
No 417
>PRK09389 (R)-citramalate synthase; Provisional
Probab=44.32 E-value=3.7e+02 Score=28.92 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.|.++||+.|.+|.=+.++.- .++++.+.+.+.. ..+. ++ ..+ ..++++.+.+.+
T Consensus 28 ~ia~~L~~~Gv~~IE~G~p~~~~~d-------------~e~v~~i~~~~~~---~~i~-a~-~r~---~~~di~~a~~~g 86 (488)
T PRK09389 28 EIARKLDELGVDVIEAGSAITSEGE-------------REAIKAVTDEGLN---AEIC-SF-ARA---VKVDIDAALECD 86 (488)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCHHH-------------HHHHHHHHhcCCC---cEEE-ee-ccc---CHHHHHHHHhCC
Confidence 4556666778888777754333221 2334444443332 1111 11 011 144566666677
Q ss_pred CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 244 PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 244 p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+.|.+|. +-++++....-+ .+.++..++...+.++.++.|+.
T Consensus 87 ~~~v~i~~----~~Sd~h~~~~l~----~s~~e~l~~~~~~v~~ak~~g~~ 129 (488)
T PRK09389 87 VDSVHLVV----PTSDLHIEYKLK----KTREEVLETAVEAVEYAKDHGLI 129 (488)
T ss_pred cCEEEEEE----ccCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHCCCE
Confidence 77666664 333433222111 23455556666666666666654
No 418
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=44.25 E-value=25 Score=26.76 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=30.5
Q ss_pred ccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 379 FRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 379 Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
|+....+++.+++++|+.+.. .+...|+.|+..|.|...+
T Consensus 9 l~~~~~~S~~eLa~~~~~s~~-~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 9 LRERGRVSLAELAREFGISPE-AVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHS-SEEHHHHHHHTT--HH-HHHHHHHHHHCCTSCEEEE
T ss_pred HHHcCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCcEEEec
Confidence 345566999999999999975 5778899999999998654
No 419
>PTZ00411 transaldolase-like protein; Provisional
Probab=44.18 E-value=2.8e+02 Score=28.31 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCC----CCcEEEEEecCC-CCC-HHH-------HHHHHHCCCC--EEEEccCCCCHHHHHHcCCC
Q 012112 131 RFVSSILDTLTDKFGLS----LDAEISMEMDPG-TFD-ARK-------MEELMDLGVN--RVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~l~----~~~eitiE~~P~-~l~-~e~-------l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~ 195 (471)
+.+...++.+.-.|+.. ....+++|++|. ..+ ++. ++.+.+.|++ ||-|-|=
T Consensus 78 ~~~~~a~d~l~v~~g~~i~~~i~G~VS~EVd~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIP------------- 144 (333)
T PTZ00411 78 ELVELVVDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLA------------- 144 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeC-------------
Confidence 34555555555444210 124799999985 223 222 2233334553 5555442
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
.| .+-.+|++.+.+.|+. +|+.++|.+ . -...+.+.|+..||.|-=.+
T Consensus 145 aT-~eGi~Aa~~L~~eGI~-~N~TlvFS~-~--------QA~aaaeAGa~~ISPfVGRi 192 (333)
T PTZ00411 145 ST-WEGIQAAKALEKEGIH-CNLTLLFSF-A--------QAVACAQAGVTLISPFVGRI 192 (333)
T ss_pred CC-HHHHHHHHHHHHCCCc-eeEeEecCH-H--------HHHHHHHcCCCEEEeecchH
Confidence 33 3457889999999997 999999976 1 23345667999999887544
No 420
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=44.18 E-value=26 Score=36.14 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHH
Q 012112 161 FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233 (471)
Q Consensus 161 l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~ 233 (471)
.-++.++.|+++|+|-|.||.= .=..++--.-..+...+.+.++.+++.|+. | |+++|..+.-.|.
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~--~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~-v----iL~~~~~~~P~Wl 76 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEF--SWSWLEPEEGQYDFSWLDRVLDLAAKHGIK-V----ILGTPTAAPPAWL 76 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CC--EHHHH-SBTTB---HHHHHHHHHHHCTT-E-E----EEEECTTTS-HHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEe--chhhccCCCCeeecHHHHHHHHHHHhccCe-E----EEEecccccccch
Confidence 3468899999999999998752 333444444455888899999999999987 3 4456655544443
No 421
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=44.14 E-value=1.2e+02 Score=26.68 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceec
Q 012112 236 LRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYE 297 (471)
Q Consensus 236 l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye 297 (471)
.+.+.+.+.+.|-+|+|...-. .+.+.+...++...+.+.|.+.||+.+.
T Consensus 64 ~~~a~kv~~~~ivlyPyAHLSs------------~La~P~~A~~iL~~le~~L~~~g~eV~r 113 (138)
T PF08915_consen 64 KWVAKKVKAKRIVLYPYAHLSS------------SLASPDVAVEILKKLEERLKSRGFEVYR 113 (138)
T ss_dssp HHHHHHTT-SEEEEEE-GGGSS------------SB--HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHhcCCCEEEEeCcccccC------------CcCChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 3445678999999999876532 2356778899999999999999998764
No 422
>PRK09505 malS alpha-amylase; Reviewed
Probab=44.03 E-value=46 Score=37.36 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCCEEEEc--cCCC--------------------CHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEee
Q 012112 163 ARKMEELMDLGVNRVSLG--VQAF--------------------QDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLD 219 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiG--vQS~--------------------~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~D 219 (471)
.++|..|+++||+.|-|. +++. +..-...+... -+.++..+.|+.+++.|++ |-+|
T Consensus 233 ~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~-VilD 311 (683)
T PRK09505 233 TEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR-ILFD 311 (683)
T ss_pred HHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEE
Confidence 478999999999999775 2321 11222234433 3789999999999999998 9999
Q ss_pred eecCCCC
Q 012112 220 LISSLPH 226 (471)
Q Consensus 220 lI~GlPg 226 (471)
+++...+
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 9999887
No 423
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.81 E-value=41 Score=33.61 Aligned_cols=60 Identities=13% Similarity=0.293 Sum_probs=45.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~ 188 (471)
++.|.+-- ++++.+.+.++.++. .+.+|+. +.++.+.++.+++.||+.||+|-=+.+-..
T Consensus 226 aDiImLDn-----mspe~l~~av~~~~~--------~~~lEaS-GGIt~~ni~~yA~tGVD~IS~galthsa~~ 285 (294)
T PRK06978 226 AQSVLLDN-----FTLDMMREAVRVTAG--------RAVLEVS-GGVNFDTVRAFAETGVDRISIGALTKDVRA 285 (294)
T ss_pred CCEEEECC-----CCHHHHHHHHHhhcC--------CeEEEEE-CCCCHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 56677643 467888888776642 3667776 469999999999999999999987665443
No 424
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=43.77 E-value=3e+02 Score=26.35 Aligned_cols=84 Identities=14% Similarity=0.236 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHH-HHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCC
Q 012112 195 AHGLKEVYEAIE-IVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPT 273 (471)
Q Consensus 195 ~~t~~~~~~ai~-~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~ 273 (471)
.|.....+.+++ .+++.||.+|-+--.=|+|+ +...++.+...++..+.+-+|++..|--.-.... .+
T Consensus 148 ~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~-----~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMa------sd 216 (265)
T COG4822 148 DHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPL-----VDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMA------SD 216 (265)
T ss_pred CccHHHHHHHHHHHHHhcCCCceEEEEecCCCc-----HHHHHHHHHHcCCceEEEeeeEEeechhhhhhhc------cc
Confidence 455666677776 46778999898888888886 4566778888899999999999988754332211 12
Q ss_pred HHHHHHHHHHHHHHHHHCCCce
Q 012112 274 ETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 274 ~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+++.|. ..|.++||..
T Consensus 217 dedswk------~il~~~G~~v 232 (265)
T COG4822 217 DEDSWK------NILEKNGFKV 232 (265)
T ss_pred chHHHH------HHHHhCCcee
Confidence 223332 4678899975
No 425
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=43.58 E-value=1.7e+02 Score=28.79 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC-CHHHHHHHHHCCCCEEEE-----ccCCCCHHHHHH-cCC---CCC
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF-DARKMEELMDLGVNRVSL-----GVQAFQDELLKS-CGR---AHG 197 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l-~~e~l~~l~~~Gvnrvsi-----GvQS~~d~~L~~-l~R---~~t 197 (471)
-+++.+.++++.+++..+ ..+.+-.+|+.- ..+.++.+.++|++-|.+ |.. .|.+..+. ++. ..+
T Consensus 137 ~~~~~~~eiv~~vr~~~~----~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~-~~~~~~~~~~~~~~gg~s 211 (296)
T cd04740 137 TDPEAVAEIVKAVKKATD----VPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMA-IDIETRKPILGNVTGGLS 211 (296)
T ss_pred CCHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccc-cccccCceeecCCcceec
Confidence 467888999999988653 457777777532 336677788999988765 110 11111000 010 011
Q ss_pred ----HHHHHHHHHHHHHcCCCeeEeeeecCCCC-CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCC
Q 012112 198 ----LKEVYEAIEIVKLCGVENWSLDLISSLPH-QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLP 272 (471)
Q Consensus 198 ----~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p 272 (471)
.....+.+..+++. +++.+|. .=| .|.++..+- ++.+.+-|+++.-.+. +
T Consensus 212 g~~~~~~~~~~i~~i~~~----~~ipii~-~GGI~~~~da~~~----l~~GAd~V~igra~l~-~--------------- 266 (296)
T cd04740 212 GPAIKPIALRMVYQVYKA----VEIPIIG-VGGIASGEDALEF----LMAGASAVQVGTANFV-D--------------- 266 (296)
T ss_pred CcccchHHHHHHHHHHHh----cCCCEEE-ECCCCCHHHHHHH----HHcCCCEEEEchhhhc-C---------------
Confidence 11234555555554 2233333 223 355555544 4578888888764333 1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCce
Q 012112 273 TETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+...++.....++|++.||..
T Consensus 267 -p~~~~~i~~~l~~~~~~~g~~~ 288 (296)
T cd04740 267 -PEAFKEIIEGLEAYLDEEGIKS 288 (296)
T ss_pred -hHHHHHHHHHHHHHHHHcCCCC
Confidence 2334456666778888999864
No 426
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=43.46 E-value=3e+02 Score=27.70 Aligned_cols=64 Identities=11% Similarity=0.215 Sum_probs=33.0
Q ss_pred eeEEEEcCC--CCCCCCHHHHHHHH-HHHHHHcCC-C-CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEc
Q 012112 115 LETVFFGGG--TPSLVPPRFVSSIL-DTLTDKFGL-S-LDAEISMEMDPGTFDARKMEELMDLGVNRVSLG 180 (471)
Q Consensus 115 v~~i~fGGG--Tps~l~~~~l~~ll-~~l~~~~~l-~-~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiG 180 (471)
++.|++.+. +++++++++++++. ..+++.+.- . ...-..+-+ .+ -+...+..+++.|++-+|+.
T Consensus 194 ad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~-CG-~~~~~~~~l~~~g~d~ls~d 262 (340)
T TIGR01463 194 ADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHI-CG-FTQPILRDIANNGCFGFSVD 262 (340)
T ss_pred CCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEE-CC-CchhhHHHHHHhCCCEEeec
Confidence 566666543 34578887666553 222222110 0 001111211 12 23567899999999988754
No 427
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=43.10 E-value=1.4e+02 Score=22.18 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=30.1
Q ss_pred ccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 381 TARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 381 ~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
....+...++++++|.+.. ...+.+.+|.+.||++...
T Consensus 19 ~~~~v~~~~iA~~L~vs~~-tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGVSPP-TVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp CTSSBBHHHHHHHHTS-HH-HHHHHHHHHHHTTSEEEET
T ss_pred CCCCccHHHHHHHHCCChH-HHHHHHHHHHHCCCEEecC
Confidence 3466889999999999875 3567899999999998753
No 428
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.65 E-value=71 Score=30.02 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHCCCc
Q 012112 276 QSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 276 ~~~~~~~~~~~~L~~~Gy~ 294 (471)
...+..+.+++.+.++|+.
T Consensus 148 ~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 3455566677788887854
No 429
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=42.37 E-value=3.2e+02 Score=30.70 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCcEEEEEecCC-CCCHHHHHHHHHCCCCEEEEccCCC-----CHHHHHH--cCCCCCHHHHHHHHHHHH
Q 012112 138 DTLTDKFGLSLDAEISMEMDPG-TFDARKMEELMDLGVNRVSLGVQAF-----QDELLKS--CGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 138 ~~l~~~~~l~~~~eitiE~~P~-~l~~e~l~~l~~~GvnrvsiGvQS~-----~d~~L~~--l~R~~t~~~~~~ai~~~~ 209 (471)
+.|++..+. +...-+-|. ..+.+.++.++++|.. +.+..+.. +.-.+.+ +....+.+++.+.+....
T Consensus 235 ~~Ie~~lG~----~p~~FayPyG~yn~~~~~iak~aGy~-~afTt~~G~~~~~d~~~LpRi~I~~~~sl~~F~~~l~~~~ 309 (672)
T PRK14581 235 QRIVQATGK----QPRVWVWPYGAPNGTVLNILRQHGYQ-LAMTLDPGVANINDLMNIPRILISNNPSLKDFALTVTSVQ 309 (672)
T ss_pred HHHHHHhCC----CCCEEEcCCCCcCHHHHHHHHHCCCc-EEEECCCCCCCCCCCCcCceEEeCCCCCHHHHHHHHhhcc
Confidence 445555442 344556774 5799999999999985 44444433 2222332 244567788877776554
Q ss_pred HcC---CCeeEeeeecC-CCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhh-cccCCCCCCCCHHHHHHHHHHH
Q 012112 210 LCG---VENWSLDLISS-LPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGI-LYTPGEFPLPTETQSANFYRMA 284 (471)
Q Consensus 210 ~~G---~~~v~~DlI~G-lPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~-~~~~g~~~~p~~~~~~~~~~~~ 284 (471)
+.. +-.|.+|.||. =|.|..+.+...++.+.++++++|-+-.+.=..|.-... .|-... .+ ...+++|..+
T Consensus 310 ~~~~~r~~~vdld~vyd~dp~q~~~nl~~l~~ri~~~~~~~VyLqafadp~gdg~~~~lYFpnr-~l---PmraDlfnrv 385 (672)
T PRK14581 310 EKNIMRVAHVDLDYLYDPDPAQEKENLDKLVQRISDLRVTHVFLQAFSDPKGDGNIRQVYFPNR-WI---PMRQDLFNRV 385 (672)
T ss_pred ccCCceEEEeccccccCCCHHHHhhhHHHHHHHHHhcCCCEEEEEeeeCCCCCCceeeEEecCC-cc---cHHHhhhhHH
Confidence 332 23467888887 577888889999999999999999887776444442221 111111 12 3567888887
Q ss_pred HHHHH-HCCCceec---cccccC
Q 012112 285 SSMLS-SAGYRHYE---ISSYGE 303 (471)
Q Consensus 285 ~~~L~-~~Gy~~ye---is~fa~ 303 (471)
.-.|. .+|-+.|. +..|..
T Consensus 386 awql~tR~~v~vyAWmpvl~~~l 408 (672)
T PRK14581 386 VWQLASRPDVEVYAWMPVLAFDM 408 (672)
T ss_pred HHHHHhhhCceEEEeeehhhccC
Confidence 55555 56887773 555544
No 430
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=42.26 E-value=1.9e+02 Score=27.60 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=57.9
Q ss_pred CCCCCCHH--HHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHH---HHHHCCCCEEEEccCCCCHHHHHHcCCCCCH
Q 012112 124 TPSLVPPR--FVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKME---ELMDLGVNRVSLGVQAFQDELLKSCGRAHGL 198 (471)
Q Consensus 124 Tps~l~~~--~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~---~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~ 198 (471)
+||++..+ .+.+.+..|.+.++ ...++++|+...+ .++.++ .|.+.+ .++-+-| +.|.
T Consensus 28 NPsll~k~g~~~~~~~~~i~~~~~--~~~~v~~Qv~~~d-~e~mi~ea~~l~~~~-~ni~IKI-------------P~T~ 90 (220)
T PRK12653 28 NPSIIAAGKKPLEVVLPQLHEAMG--GQGRLFAQVMATT-AEGMVNDARKLRSII-ADIVVKV-------------PVTA 90 (220)
T ss_pred CHHHHHhcCCCHHHHHHHHHHHhC--CCCcEEEEEecCC-HHHHHHHHHHHHHhC-CCEEEEe-------------CCCH
Confidence 46665432 23344555555543 2346888886543 233333 333333 2233322 3344
Q ss_pred HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 199 KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+ -.+|++.+.+.|+. +++.++|.. .| .+ .+...+++.||.|-
T Consensus 91 ~-Gl~A~~~L~~~GI~-vn~T~vfs~-~Q-------a~-~Aa~aGa~yIspyv 132 (220)
T PRK12653 91 E-GLAAIKMLKAEGIP-TLGTAVYGA-AQ-------GL-LSALAGAEYVAPYV 132 (220)
T ss_pred H-HHHHHHHHHHcCCC-eeEEEecCH-HH-------HH-HHHhcCCcEEEeec
Confidence 4 58899999999998 999999964 12 22 23357888888884
No 431
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=42.25 E-value=4.1e+02 Score=27.43 Aligned_cols=68 Identities=12% Similarity=-0.021 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCCHHHHHHHH-HHHHHHcC-C-CCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 117 TVFFGGGTPSLVPPRFVSSIL-DTLTDKFG-L-SLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 117 ~i~fGGGTps~l~~~~l~~ll-~~l~~~~~-l-~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
.+....++++++++++++++. -.+++.+. + ..+..+. .+...-+...++.|++.|.+.+..-.++.|-
T Consensus 233 ~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~g~~~i--lh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl 303 (378)
T cd03308 233 FTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAARGQRIF--LFFEGDWERYLEYLQELPKGKTVGLFEYGDP 303 (378)
T ss_pred EEEecccccCccCHHHHHHHHHHHHHHHHHHHHhcCCCEE--EEcCCCcHHHHHHHHhcCCCcEEEcCCCCCH
Confidence 455556788999998887653 22222211 0 0111222 2444445678999999999854333444433
No 432
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.15 E-value=3e+02 Score=25.89 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=64.4
Q ss_pred HHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCC-eeEee
Q 012112 142 DKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGLKEVYEAIEIVKLCGVE-NWSLD 219 (471)
Q Consensus 142 ~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~-~v~~D 219 (471)
+.|+-.++ ..+|..-...+-+.|..+.-.|=+++...+= .+++-+..-+ .-+.++-++|++.+.++|++ .+++|
T Consensus 17 ~ff~~~~~--~~lef~TK~~nv~~Ll~l~~~~~t~~rfSln--p~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~~~ 92 (199)
T TIGR00620 17 EHFGQSDF--GKLRFVTKFHHVDHLLDAKHNGKTRFRFSIN--ADYVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFIIA 92 (199)
T ss_pred HHHccCCC--cEEEEEEcccchhhHhcCCCCCCEEEEEEeC--HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 34443344 4444444556667777777777666555432 2456666654 45889999999999999986 24677
Q ss_pred eecCCCCCCHHHHHHHHHHHH-hCCCC
Q 012112 220 LISSLPHQTPQMWEESLRRTV-GAQPK 245 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~-~l~p~ 245 (471)
=|+=.||- .+++.+.++.+. ++.++
T Consensus 93 PIi~~egW-~e~Y~~l~~~l~~~l~~~ 118 (199)
T TIGR00620 93 PIYIHEGW-KEGYRNLLEKLDEALPQD 118 (199)
T ss_pred ceEeeCCh-HHHHHHHHHHHHHhCCHh
Confidence 78777774 466777777775 45543
No 433
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=42.15 E-value=36 Score=35.07 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEec-CCC------------CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMD-PGT------------FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~-P~~------------l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
|+++++.++.. ...+.+|+- |.. +....++.+++.|++.=-+=+|||+.+.|+.+.|...
T Consensus 153 L~Evl~lv~~~-----~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p-- 225 (356)
T cd08560 153 HKESIALFKSL-----GVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEP-- 225 (356)
T ss_pred HHHHHHHHHhc-----CceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCC--
Confidence 57777777642 246777773 332 3457899999999861134489999999998754431
Q ss_pred HHHHHHHHHHHcCCCeeEeeeecCC--CCCCHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 200 EVYEAIEIVKLCGVENWSLDLISSL--PHQTPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 200 ~~~~ai~~~~~~G~~~v~~DlI~Gl--PgqT~e~~~~~l~~~~~l~p~his~y~l 252 (471)
.+. +.+-...+- |.+....|...++.+.+.+.+.|+.+..
T Consensus 226 ------------~~~-~~l~~l~~~~~~~~~~~~~~~~l~~i~a~~a~~i~P~~~ 267 (356)
T cd08560 226 ------------DFG-RQAVYLDDRDDTADFPATWSPSMDELKARGVNIIAPPIW 267 (356)
T ss_pred ------------CCC-eeEEEEccCCccccccccHHHHHHHHHhCCccEecCchh
Confidence 011 111111111 2222234666777776777776665543
No 434
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=42.08 E-value=3.9e+02 Score=27.15 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCH---HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 126 SLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDA---RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 126 s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~---e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
++|+++.+.++++...+ +++. .|.+-.--..+-. +.++.+++.|+.-|++. .+.-...
T Consensus 41 ~~Ls~eei~~~~~~~~~-~Gv~---kvRlTGGEPllR~dl~eIi~~l~~~~~~~islT---------------TNG~~L~ 101 (322)
T COG2896 41 ELLSLEEIRRLVRAFAE-LGVE---KVRLTGGEPLLRKDLDEIIARLARLGIRDLSLT---------------TNGVLLA 101 (322)
T ss_pred ccCCHHHHHHHHHHHHH-cCcc---eEEEeCCCchhhcCHHHHHHHHhhcccceEEEe---------------cchhhHH
Confidence 46889999999998887 6654 4565552224533 66666666667777773 2334455
Q ss_pred HHHHHHHHcCCCeeEeee----------ecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 203 EAIEIVKLCGVENWSLDL----------ISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 203 ~ai~~~~~~G~~~v~~Dl----------I~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
+-.+.++++|+..||++| |-|. +. .+.+.+-++.+.+.+...|-+....+
T Consensus 102 ~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~-~~-~~~Vl~GI~~A~~~Gl~pVKlN~Vv~ 161 (322)
T COG2896 102 RRAADLKEAGLDRVNVSLDSLDPEKFRKITGR-DR-LDRVLEGIDAAVEAGLTPVKLNTVLM 161 (322)
T ss_pred HHHHHHHHcCCcEEEeecccCCHHHHHHHhCC-Cc-HHHHHHHHHHHHHcCCCceEEEEEEe
Confidence 677889999999777665 3332 23 77888889999999887777766433
No 435
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=41.75 E-value=2.1e+02 Score=27.23 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++++.+++..+ +.+.++-+--+.+.++.+.+.|++.+.+|-..+. +.+.+.+.++.+.+..+.
T Consensus 61 ~~i~~i~~~~~------~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~-----------~p~~~~~i~~~~~~~~i~ 123 (243)
T cd04731 61 DVVERVAEEVF------IPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE-----------NPELIREIAKRFGSQCVV 123 (243)
T ss_pred HHHHHHHHhCC------CCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh-----------ChHHHHHHHHHcCCCCEE
Confidence 44555555432 3344555555788888888899999999954431 233344444433222243
Q ss_pred eeEeeeec-----------CCCCCCHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 215 NWSLDLIS-----------SLPHQTPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 215 ~v~~DlI~-----------GlPgqT~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
+++|+-. |.+.+|..+..+-++.+.+.+++.|.+....
T Consensus 124 -~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~ 172 (243)
T cd04731 124 -VSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 172 (243)
T ss_pred -EEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccC
Confidence 6787553 3345566667777788889999988877643
No 436
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=41.67 E-value=3.9e+02 Score=27.07 Aligned_cols=150 Identities=11% Similarity=0.166 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCH----HHHHHHHHCCCCEEEEccCCCCHHHHH---HcCCCCCH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDA----RKMEELMDLGVNRVSLGVQAFQDELLK---SCGRAHGL 198 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~----e~l~~l~~~GvnrvsiGvQS~~d~~L~---~l~R~~t~ 198 (471)
++++++.+.++.+.+. +. .+|.+-. +|. .+. +.++.+++.+. .+.+-..| ..+++. .+|..
T Consensus 70 ls~eeI~e~~~~~~~~-G~---~~i~l~gG~~p~-~~~~~~~~i~~~Ik~~~~-~i~~~~~t-~~ei~~~~~~~g~~--- 139 (343)
T TIGR03551 70 LSLEEIAERAAEAWKA-GA---TEVCIQGGIHPD-LDGDFYLDILRAVKEEVP-GMHIHAFS-PMEVYYGARNSGLS--- 139 (343)
T ss_pred CCHHHHHHHHHHHHHC-CC---CEEEEEeCCCCC-CCHHHHHHHHHHHHHHCC-CceEEecC-HHHHHHHHHHcCCC---
Confidence 5777777766666552 32 3566553 342 232 55666666532 23333332 122221 22221
Q ss_pred HHHHHHHHHHHHcCCCeeEe---eeec------CCCCC-CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCC
Q 012112 199 KEVYEAIEIVKLCGVENWSL---DLIS------SLPHQ-TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGE 268 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~~v~~---DlI~------GlPgq-T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~ 268 (471)
..+.++.++++|+..+.. +..- =-|+. |.++|.++++.+.+++..--+...+-+ +.
T Consensus 140 --~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~-~E----------- 205 (343)
T TIGR03551 140 --VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGH-VE----------- 205 (343)
T ss_pred --HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEec-CC-----------
Confidence 246677888888876541 1110 03554 899999999999999986433332221 11
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HHCCCceeccccccCCC
Q 012112 269 FPLPTETQSANFYRMASSML-SSAGYRHYEISSYGEDG 305 (471)
Q Consensus 269 ~~~p~~~~~~~~~~~~~~~L-~~~Gy~~yeis~fa~~g 305 (471)
+.++..++...+.+.= ...||..+-.-||--+|
T Consensus 206 ----t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~g 239 (343)
T TIGR03551 206 ----TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYN 239 (343)
T ss_pred ----CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCC
Confidence 3344555555544432 33456665555655443
No 437
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=41.65 E-value=47 Score=24.39 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=27.9
Q ss_pred ccCCCCHhhHHHHhCC-Ch-HHHHHHHHHHHHHCCCEEEec
Q 012112 381 TARGVDLKSFGETFGC-SL-VHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 381 ~~~gi~~~~~~~~fg~-~~-~~~~~~~~~~~~~~gll~~~~ 419 (471)
+..|++.+++..++.. .+ ...|...++.++++|.+..++
T Consensus 14 lr~G~~keeLrsrl~~~~l~~k~~~~ll~~l~~~g~l~~~g 54 (59)
T PF09106_consen 14 LRPGMPKEELRSRLFKPRLPPKLFNALLEALVAEGRLKVEG 54 (59)
T ss_dssp TSS-EEHHHHHHHCST-TS-HCCHHHHHHHHHHTTSEEEES
T ss_pred CccCcCHHHHHHHHhhccCCHHHHHHHHHHHHHCCCeeeEC
Confidence 3468888888877754 33 234677899999999998654
No 438
>PRK00915 2-isopropylmalate synthase; Validated
Probab=41.57 E-value=4.9e+02 Score=28.18 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+..+++.+... +++.|++. +|-..+.|.++.++++.+++.++-.++..+.+-++ -+.-....+..+
T Consensus 148 ~~~l~~~~~~~~~~--------Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv 218 (513)
T PRK00915 148 LDFLCRVVEAAIDA--------GATTINIP-DTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAV 218 (513)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEEc-cCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHH
Confidence 34555555555432 25677775 47777899999999999998764222345555553 222355666666
Q ss_pred HHCCCCEEEEccCC
Q 012112 170 MDLGVNRVSLGVQA 183 (471)
Q Consensus 170 ~~~GvnrvsiGvQS 183 (471)
++|+++|.--+-.
T Consensus 219 -~aGa~~Vd~Tv~G 231 (513)
T PRK00915 219 -EAGARQVECTING 231 (513)
T ss_pred -HhCCCEEEEEeec
Confidence 4899998765544
No 439
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=41.56 E-value=32 Score=30.07 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCEEEE-----ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC
Q 012112 163 ARKMEELMDLGVNRVSL-----GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS 223 (471)
Q Consensus 163 ~e~l~~l~~~Gvnrvsi-----GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G 223 (471)
++.++.|+++|+|.+.+ |.-++-|.-+......-+.+-+.+.++.+++.|+. |-+.+=++
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Gir-v~ay~~~~ 67 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIR-VPAYFDFS 67 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCE-EEEEEeee
Confidence 46788999999999988 55566565554445555645578889999999997 55544444
No 440
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=41.43 E-value=52 Score=35.20 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCCEEEEccC--CC--------CHHHHH---------HcCC-CCCHHHHHHHHHHHHHcCCCeeEeeeec
Q 012112 163 ARKMEELMDLGVNRVSLGVQ--AF--------QDELLK---------SCGR-AHGLKEVYEAIEIVKLCGVENWSLDLIS 222 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQ--S~--------~d~~L~---------~l~R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~ 222 (471)
.++|..|+++||+.|-|..= |. +..-.. .+.. --|.++.++.|+.+++.|+. |-+|+++
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~-vi~D~V~ 103 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIK-VYADVVL 103 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCE-EEEEECc
Confidence 36678888888888866542 21 112222 2222 23899999999999999998 9999999
Q ss_pred CCCC
Q 012112 223 SLPH 226 (471)
Q Consensus 223 GlPg 226 (471)
..=+
T Consensus 104 NH~~ 107 (479)
T PRK09441 104 NHKA 107 (479)
T ss_pred cccc
Confidence 8854
No 441
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=41.34 E-value=1.3e+02 Score=30.67 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
++.+.+.+=++.+++.++ ....-..+-+|+ ..+.++.+++.|+ .+.+-|..+
T Consensus 7 id~~~l~~N~~~~~~~~~-~~~~~~avKAN~---~~~v~~~l~~~G~---g~~vaS~~E 58 (362)
T cd00622 7 VDLGDVVRKYRRWKKALP-RVRPFYAVKCNP---DPAVLRTLAALGA---GFDCASKGE 58 (362)
T ss_pred EeHHHHHHHHHHHHHHCC-CCeEEEEeccCC---CHHHHHHHHHcCC---CeEecCHHH
Confidence 466777777777777664 111223355666 6788888888886 455555444
No 442
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.01 E-value=64 Score=32.04 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=44.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDE 187 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~ 187 (471)
++.|.+-- ++++++.+.+..++.. ..+|+. +.++.+.++.+.+.||+.||+|-=+.+-.
T Consensus 214 aDiImLDn-----~s~e~l~~av~~~~~~--------~~leaS-GgI~~~ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 214 VDTIMLDN-----FSLDDLREGVELVDGR--------AIVEAS-GNVNLNTVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred CCEEEECC-----CCHHHHHHHHHHhCCC--------eEEEEE-CCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 56666642 5778888888877532 367776 46999999999999999999997665543
No 443
>PRK00035 hemH ferrochelatase; Reviewed
Probab=40.98 E-value=3.9e+02 Score=26.88 Aligned_cols=166 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred EcCCCCCC-CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE---EEccCCCCHHHHHHcCCC
Q 012112 120 FGGGTPSL-VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV---SLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 120 fGGGTps~-l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv---siGvQS~~d~~L~~l~R~ 195 (471)
+|||+|-. .+.++.+.|-+.+.+. +......+.++..+.++.+ .++.|++.|+++| .+=.|.. .
T Consensus 66 ig~gSPl~~~t~~q~~~L~~~l~~~-~~~~~V~~am~y~~P~i~e-al~~l~~~G~~~IivlPL~p~~s----------~ 133 (333)
T PRK00035 66 IGGGSPLNVITRRQAEALQAELAAR-GPDLPVYLGMRYWNPSIEE-ALEALKADGVDRIVVLPLYPQYS----------Y 133 (333)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcc-CCCceEEEeecCCCCCHHH-HHHHHHhcCCCEEEEEECCCccc----------c
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEE----EEeccccCCChhhhcccCCCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVS----VYDLQVEQGTKFGILYTPGEFPL 271 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his----~y~l~~~pgT~l~~~~~~g~~~~ 271 (471)
++...+.+.+..+.+.--..+.+.++-.+ +.....+....+.+.+.-.+.-. ..-+-.-.|||.........
T Consensus 134 ~t~gs~~~~i~~~~~~~~~~~~i~~i~~~-~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~--- 209 (333)
T PRK00035 134 STTASYFEDLARALAKLRLQPEIRFIRSY-YDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDP--- 209 (333)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEeCCc-cCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCC---
Q ss_pred CCHHHHHHHHHHHHHHHHHCCC--ceeccccccCCC
Q 012112 272 PTETQSANFYRMASSMLSSAGY--RHYEISSYGEDG 305 (471)
Q Consensus 272 p~~~~~~~~~~~~~~~L~~~Gy--~~yeis~fa~~g 305 (471)
-..+....+....++.|+ ..+++...++-|
T Consensus 210 ----Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g 241 (333)
T PRK00035 210 ----YQQQCEETARLLAEALGLPDEDYDLTYQSRFG 241 (333)
T ss_pred ----hHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCC
No 444
>TIGR03356 BGL beta-galactosidase.
Probab=40.69 E-value=1.7e+02 Score=30.77 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCeeEeee-ecCCCCC--------C-
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKS-CGRAHG---LKEVYEAIEIVKLCGVENWSLDL-ISSLPHQ--------T- 228 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~-l~R~~t---~~~~~~ai~~~~~~G~~~v~~Dl-I~GlPgq--------T- 228 (471)
+|.++.|+++|+|.+.++| +.+ ++... -+. .+ .+-..+.++.+++.|++ +-++| =+++|-. +
T Consensus 57 ~eDi~l~~~~G~~~~R~si-~Ws-ri~p~g~~~-~n~~~~~~y~~~i~~l~~~gi~-pivtL~Hfd~P~~l~~~gGw~~~ 132 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSI-AWP-RIFPEGTGP-VNPKGLDFYDRLVDELLEAGIE-PFVTLYHWDLPQALEDRGGWLNR 132 (427)
T ss_pred HHHHHHHHHcCCCeEEccc-chh-hcccCCCCC-cCHHHHHHHHHHHHHHHHcCCe-eEEeeccCCccHHHHhcCCCCCh
Confidence 5899999999999777777 221 11111 111 12 45677889999999998 77777 4666642 2
Q ss_pred --HHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 229 --PQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 229 --~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
.+.+.+-.+.+.+.=-+.|..+...-||..
T Consensus 133 ~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 133 DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 244555555554432334544544445543
No 445
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=40.61 E-value=66 Score=30.92 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 206 ~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
++|++.|.+ ...|. -+-.+.+.+.+++|.++++.++++|.++.+- +++ +.++...++....
T Consensus 12 RwAk~~gl~-----~~~GH-~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN----~~R---------p~~EV~~Lm~L~~ 72 (226)
T TIGR00055 12 RWAKKKGKP-----RAYGH-KAGVKSLRRILRWCANLGVECLTLYAFSTEN----WKR---------PKEEVDFLMELFE 72 (226)
T ss_pred HHHHHCCCC-----hhHhH-HHHHHHHHHHHHHHHHcCCCEEEEEEeehhh----cCc---------CHHHHHHHHHHHH
Confidence 456666654 23333 3445888999999999999999999998763 222 3445555666666
Q ss_pred HHHHH
Q 012112 286 SMLSS 290 (471)
Q Consensus 286 ~~L~~ 290 (471)
+.|.+
T Consensus 73 ~~l~~ 77 (226)
T TIGR00055 73 KKLDR 77 (226)
T ss_pred HHHHH
Confidence 66553
No 446
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=40.24 E-value=16 Score=35.60 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCEEEEcc--CCC------CHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAF------QDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~------~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
++|..|+++||+.|-|.. ++. +..-...+.-. -|.+++.+.++.+++.|+. |-+|++++.-+..-+-+..
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~-VilD~V~NH~~~~~~~~~~ 86 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIK-VILDVVPNHTSDDHPWFQD 86 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCE-EEEEEETSEEETTSHHHHH
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccce-EEEeeeccccccccccccc
Confidence 567888888888876642 221 11111223333 3789999999999999998 9999999876655554444
Q ss_pred HHH
Q 012112 235 SLR 237 (471)
Q Consensus 235 ~l~ 237 (471)
.+.
T Consensus 87 ~~~ 89 (316)
T PF00128_consen 87 SLN 89 (316)
T ss_dssp HHT
T ss_pred ccc
Confidence 443
No 447
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=40.22 E-value=1.1e+02 Score=31.00 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=64.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHH---HHHHCCCCEEEEccCCCCHHHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKME---ELMDLGVNRVSLGVQAFQDELLKS 191 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~---~l~~~GvnrvsiGvQS~~d~~L~~ 191 (471)
+..+-+|--+|..++..--+++++.+++. ++ ...-++...+|..++++..+ .|+++| +.+++||.
T Consensus 191 ~~~IRi~tr~~~~~P~rit~el~~~L~~~-~~-~~~~vsh~nh~~Ei~~~~~~ai~~L~~aG---i~v~~qtv------- 258 (331)
T TIGR00238 191 LVRLRIGTRLPVVIPQRITDELCELLASF-EL-QLMLVTHINHCNEITEEFAEAMKKLRTVN---VTLLNQSV------- 258 (331)
T ss_pred ccEEEeecCCCccCchhcCHHHHHHHHhc-CC-cEEEEccCCChHhCCHHHHHHHHHHHHcC---CEEEeecc-------
Confidence 45666776666554433334666666653 22 11233333455556665544 446666 56888885
Q ss_pred cCCC--CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC-----CHHHHHHHHHHHHh
Q 012112 192 CGRA--HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ-----TPQMWEESLRRTVG 241 (471)
Q Consensus 192 l~R~--~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq-----T~e~~~~~l~~~~~ 241 (471)
+-|+ .+.+.+.+..+.+.+.|+....+......+|- +.+...+.++.+.+
T Consensus 259 Ll~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~~~~~~~~i~~~l~~ 315 (331)
T TIGR00238 259 LLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLVPDAEAAQIVKELAR 315 (331)
T ss_pred eECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccCCHHHHHHHHHHHHh
Confidence 4443 35677777888888888865555544444442 34555555555544
No 448
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=39.93 E-value=75 Score=26.00 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 368 KDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 368 ~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
.+++.++|-..--..+|+.++++.++++.+. ..+...++.|.+.|+|-.+
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~-~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGMSE-NEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS-H-HHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCcCH-HHHHHHHHHHHhCCeEecc
Confidence 3444444433344578999999999997774 4688999999999998643
No 449
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=39.92 E-value=50 Score=33.21 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHc-CCCCCcEEEEEec-CC--------CCCHHHHHHHHHCCCC----EEEEccCCCCHHHHHHcCCC
Q 012112 133 VSSILDTLTDKF-GLSLDAEISMEMD-PG--------TFDARKMEELMDLGVN----RVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 133 l~~ll~~l~~~~-~l~~~~eitiE~~-P~--------~l~~e~l~~l~~~Gvn----rvsiGvQS~~d~~L~~l~R~ 195 (471)
|+++++.+...- .-.....+.+|+- |. .+.+..++.+++.|.. ++- |||||.++|+.+.+.
T Consensus 116 L~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~--i~SFd~~~L~~~~~~ 190 (309)
T cd08602 116 FEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPVF--IQSFEVTNLKYLRNK 190 (309)
T ss_pred HHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHHHHHHHHHcCCCCCCCCEE--EECCCHHHHHHHHhh
Confidence 466666665420 0001235666763 22 2345789999999874 444 899999999988654
No 450
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.86 E-value=3.3e+02 Score=26.70 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.+.+.|++-|-++--+..-. ..|.++..+.++.+.+.--. .+-+|.|..+.+.++..+-.+.+.+++
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~-------~Lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFY-------SLTDEERKELLEIVVEAAAG--RVPVIAGVGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGG-------GS-HHHHHHHHHHHHHHHTT--SSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHccC--ceEEEecCcchhHHHHHHHHHHHhhcC
Confidence 555666678888877754332111 12445555555555443111 255788887888888888888888888
Q ss_pred CCcEEEEe
Q 012112 244 PKHVSVYD 251 (471)
Q Consensus 244 p~his~y~ 251 (471)
++.+.+-+
T Consensus 97 ad~v~v~~ 104 (289)
T PF00701_consen 97 ADAVLVIP 104 (289)
T ss_dssp -SEEEEEE
T ss_pred ceEEEEec
Confidence 88776543
No 451
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=39.78 E-value=52 Score=30.94 Aligned_cols=107 Identities=22% Similarity=0.360 Sum_probs=62.7
Q ss_pred EEEEcCCCC--CC-CCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 117 TVFFGGGTP--SL-VPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 117 ~i~fGGGTp--s~-l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
++-+-+|++ ++ +.+ .+++.|++...+ ..++.+.+ || ...++.+.++|+++|++=+|+.+
T Consensus 30 HiDiMDg~fvpn~~~g~----~~i~~i~~~~~~--~~DvHLMv~~P----~~~i~~~~~~g~~~i~~H~E~~~------- 92 (201)
T PF00834_consen 30 HIDIMDGHFVPNLTFGP----DIIKAIRKITDL--PLDVHLMVENP----ERYIEEFAEAGADYITFHAEATE------- 92 (201)
T ss_dssp EEEEEBSSSSSSB-B-H----HHHHHHHTTSSS--EEEEEEESSSG----GGHHHHHHHHT-SEEEEEGGGTT-------
T ss_pred EEeecccccCCcccCCH----HHHHHHhhcCCC--cEEEEeeeccH----HHHHHHHHhcCCCEEEEcccchh-------
Confidence 344556763 22 234 345556655322 24566655 55 57999999999999999999753
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 193 GRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
+..+.++.+|++|++ +.+-+- |+...+.+.. ++. .+|.|-+.. ++||.
T Consensus 93 -------~~~~~i~~ik~~g~k-~Gialn---P~T~~~~~~~----~l~-~vD~VlvMs--V~PG~ 140 (201)
T PF00834_consen 93 -------DPKETIKYIKEAGIK-AGIALN---PETPVEELEP----YLD-QVDMVLVMS--VEPGF 140 (201)
T ss_dssp -------THHHHHHHHHHTTSE-EEEEE----TTS-GGGGTT----TGC-CSSEEEEES--S-TTT
T ss_pred -------CHHHHHHHHHHhCCC-EEEEEE---CCCCchHHHH----Hhh-hcCEEEEEE--ecCCC
Confidence 355678889999986 555443 5544444332 222 367665554 56774
No 452
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=39.60 E-value=10 Score=39.49 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=12.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-------cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 121 GGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-------DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 121 GGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-------~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
.-|.|.+++...-.+ -+|.. ++.+-+|. ..+.+...-++.|.+.||+.+++|.|+.|.+.|..+.
T Consensus 43 QRGEPAi~dKw~RA~--~AL~~------GaDLViELP~~~a~qsA~~FA~gaV~lL~~lgvd~l~FGsE~~~~~~l~~~a 114 (388)
T PF05636_consen 43 QRGEPAIIDKWTRAE--MALKN------GADLVIELPVVYALQSAEYFARGAVSLLNALGVDYLSFGSESGDIEDLQKIA 114 (388)
T ss_dssp BTSSB-SS-HHHHHH--HHHHH------T-SEEEE---G-----------------------------------------
T ss_pred cCCCeeeCCHHHHHH--HHHHc------CCCEEEECCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 358999988643332 33433 22344442 3455677888999999999999999999988888777
Q ss_pred CCCCHH--HHHHHHHHHHHcCC
Q 012112 194 RAHGLK--EVYEAIEIVKLCGV 213 (471)
Q Consensus 194 R~~t~~--~~~~ai~~~~~~G~ 213 (471)
+....+ ++.+.++..-+.|.
T Consensus 115 ~~~~~~~~~~~~~l~~~L~~G~ 136 (388)
T PF05636_consen 115 EILIEEPEEFKEALKEYLKKGL 136 (388)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 654332 55555554333343
No 453
>PRK03903 transaldolase; Provisional
Probab=39.59 E-value=2.1e+02 Score=28.27 Aligned_cols=82 Identities=27% Similarity=0.248 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHH----CCCCEEEEccCCCCHHHHHHcCCCCCHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMD----LGVNRVSLGVQAFQDELLKSCGRAHGLKEV 201 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~----~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~ 201 (471)
|-.+++.+.++.+...|.-..+-.+++|++|..- +++.++.-++ .|-.++-|-| +-| .+-
T Consensus 21 la~~Di~~a~d~l~p~~~~g~~G~VS~EV~P~la~d~~~~i~ea~~L~~~~~~~nv~IKI-------------PaT-~~G 86 (274)
T PRK03903 21 LAIKDIKKAADKLLPLYEKPDDGFISIEIDPFLEDDAAGSIEEGKRLYKTIGRPNVMIKV-------------PAT-KAG 86 (274)
T ss_pred HHHHHHHHHHHHhHHHhcCCCCCeEEEEEccccccCHHHHHHHHHHHHHhcCCCCEEEEe-------------CCC-HHH
Confidence 3445666777777777765555689999998543 3344444333 2222344332 223 356
Q ss_pred HHHHHHHHHcCCCeeEeeeecCC
Q 012112 202 YEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
.+|++.+.+.|+. ||+.+||..
T Consensus 87 l~Ai~~L~~~GI~-vn~TliFS~ 108 (274)
T PRK03903 87 YEAMSALMKKGIS-VNATLIFSP 108 (274)
T ss_pred HHHHHHHHHCCCc-EEEeeecCH
Confidence 7889999999997 999999965
No 454
>PLN02389 biotin synthase
Probab=39.45 E-value=1.1e+02 Score=31.67 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCeeEeeee-----cC--CCCCCHHHHHHHHHHHHhCCCC
Q 012112 202 YEAIEIVKLCGVENWSLDLI-----SS--LPHQTPQMWEESLRRTVGAQPK 245 (471)
Q Consensus 202 ~~ai~~~~~~G~~~v~~DlI-----~G--lPgqT~e~~~~~l~~~~~l~p~ 245 (471)
.+.++.++++|++.+++++= |. .++.+.+++.++++.+.+++..
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~ 228 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGIS 228 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCe
Confidence 45677788889886665442 11 1467999999999999999974
No 455
>PLN02321 2-isopropylmalate synthase
Probab=39.38 E-value=3.1e+02 Score=30.56 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=55.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc---CCC-eeEeeeecCCCCCCHHHHHHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC---GVE-NWSLDLISSLPHQTPQMWEESLRRT 239 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~---G~~-~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (471)
+.++.|.++||+.|.+|.=+.++. |... ++.+.+. ++. ..-+--|.++---..++++..++.+
T Consensus 112 ~Ia~~L~~lGVd~IEvGfP~~Sp~------------D~e~-vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al 178 (632)
T PLN02321 112 DIARQLAKLGVDIIEAGFPIASPD------------DLEA-VKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAV 178 (632)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCcc------------HHHH-HHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHh
Confidence 556667778888888886544443 1111 2222221 110 0112234444223456666665544
Q ss_pred HhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 240 VGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 240 ~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
...+...|.+|. +-++++.+..-+ .+.++..++...+.++.++.|..
T Consensus 179 ~~a~~~~I~i~~----stSd~h~~~~l~----~t~ee~l~~~~~~V~~Ak~~G~~ 225 (632)
T PLN02321 179 KHAKRPRIHTFI----ATSEIHMEHKLR----KTPDEVVEIARDMVKYARSLGCE 225 (632)
T ss_pred cCCCCCEEEEEE----cCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCc
Confidence 444444566663 334444332211 35667777777777777777764
No 456
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.26 E-value=70 Score=30.79 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 206 ~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
++|++.|.+ -..|. -.-.+.+.+.++++.++++.++++|.++.+- +++ +.++...++....
T Consensus 19 RwAk~~gl~-----~~~GH-~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN----~~R---------p~~EV~~Lm~L~~ 79 (230)
T PRK14837 19 RWALKKGLS-----FFEGH-KEGLKRAKEIVKHSLKLGIKYLSLYVFSTEN----WNR---------TDSEIEHLMFLIA 79 (230)
T ss_pred HHHHHCCCc-----hhhhH-HHHHHHHHHHHHHHHHcCCCEEEEEEeehhh----cCC---------CHHHHHHHHHHHH
Confidence 456666655 23342 3446888999999999999999999998763 222 2344555565555
Q ss_pred HHHHH
Q 012112 286 SMLSS 290 (471)
Q Consensus 286 ~~L~~ 290 (471)
+.|.+
T Consensus 80 ~~l~~ 84 (230)
T PRK14837 80 DYLSS 84 (230)
T ss_pred HHHHH
Confidence 55543
No 457
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=39.18 E-value=3.7e+02 Score=27.35 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHCCCCEEEEccCCCCHHHHHH-c----CCCC-----C----HHHHHHHHHHHHHc-CCC-eeE-----eeeecCCCC
Q 012112 168 ELMDLGVNRVSLGVQAFQDELLKS-C----GRAH-----G----LKEVYEAIEIVKLC-GVE-NWS-----LDLISSLPH 226 (471)
Q Consensus 168 ~l~~~GvnrvsiGvQS~~d~~L~~-l----~R~~-----t----~~~~~~ai~~~~~~-G~~-~v~-----~DlI~GlPg 226 (471)
..+++|++-|.| -..+--+|.. + |+.. + ..-..+.++.+|+. |-+ .|. .|..- .|
T Consensus 145 ~a~~aGfDgVei--h~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~--~g 220 (353)
T cd02930 145 LAREAGYDGVEI--MGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE--GG 220 (353)
T ss_pred HHHHcCCCEEEE--ecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC--CC
Confidence 346689999888 3333223322 1 2111 1 33455566666665 432 122 23322 25
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y 250 (471)
.+.++..+.++.+.+.++|-|++-
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 688999899999999999988763
No 458
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=39.15 E-value=55 Score=32.72 Aligned_cols=167 Identities=20% Similarity=0.195 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC----CCC--CHH
Q 012112 159 GTFDARKMEELMDLGVNRVSLGV--QAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL----PHQ--TPQ 230 (471)
Q Consensus 159 ~~l~~e~l~~l~~~GvnrvsiGv--QS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl----Pgq--T~e 230 (471)
.....+.++.|+++|||.|-+-| .-.|.+--...+-..+.+.+.+..+.|++.|++ |-+||-|-= |+- -+.
T Consensus 62 ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK-Vl~dFHYSDfwaDPakQ~kPk 140 (403)
T COG3867 62 NGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK-VLLDFHYSDFWADPAKQKKPK 140 (403)
T ss_pred CChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE-EEeeccchhhccChhhcCCcH
Confidence 45678999999999999766554 333333333333344566666666677777998 888887741 331 122
Q ss_pred HH--------H--------HHHHHHHhCC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 231 MW--------E--------ESLRRTVGAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 231 ~~--------~--------~~l~~~~~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
.| + .++..+.+-+ |+.|.+-.= -...| ..-.|+.. .-+...+++..+...+++-.
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNE---tn~gf--lwp~Ge~~--~f~k~a~L~n~g~~avrev~ 213 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNE---TNGGF--LWPDGEGR--NFDKMAALLNAGIRAVREVS 213 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccc---cCCce--eccCCCCc--ChHHHHHHHHHHhhhhhhcC
Confidence 22 2 2333333333 444444321 00000 00012211 33555666666666666533
Q ss_pred CceeccccccCCCcchhh----hhhhhcCCCEEEEccCcccccCC
Q 012112 293 YRHYEISSYGEDGYECKH----NLTYWKNKPFYGFGLGSASYLGG 333 (471)
Q Consensus 293 y~~yeis~fa~~g~~~~h----n~~yw~~~~ylG~G~gA~s~~~~ 333 (471)
=..--+-+|+.++.-++. ...+-++.||==||.|-.-|..|
T Consensus 214 p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhg 258 (403)
T COG3867 214 PTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHG 258 (403)
T ss_pred CCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccC
Confidence 333334566666544332 22333566777788777766665
No 459
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=39.12 E-value=96 Score=29.10 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHH
Q 012112 383 RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELI 462 (471)
Q Consensus 383 ~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~ 462 (471)
-+++..+++++.|.+-.. ....|+++.+.|++..+-- .+..-+.+| ++|+.+.-..+
T Consensus 18 ~~~t~~ela~~l~~S~qt-a~R~l~~le~~~~I~R~~~---------------------~~Gq~i~iT-ekG~~~L~~~~ 74 (214)
T COG1339 18 VKVTSSELAKRLGVSSQT-AARKLKELEDEGYITRTIS---------------------KRGQLITIT-EKGIDLLYKEY 74 (214)
T ss_pred ccccHHHHHHHhCcCcHH-HHHHHHhhccCCcEEEEec---------------------CCCcEEEeh-HhHHHHHHHHH
Confidence 468999999999988643 4567899999999975320 111247896 99999988887
Q ss_pred HHHHhcc
Q 012112 463 SHAFGVI 469 (471)
Q Consensus 463 ~~~~~~~ 469 (471)
+++-.++
T Consensus 75 ~d~~r~~ 81 (214)
T COG1339 75 EDLSRIF 81 (214)
T ss_pred HHHHHHh
Confidence 7765444
No 460
>PLN02417 dihydrodipicolinate synthase
Probab=38.98 E-value=3.3e+02 Score=26.79 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.+.+.|++-|.++=-++.-.. .|.++..+.++.+.+.--. .+-+|.|.-..+.++..+..+.+.+++
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~-------ls~~Er~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQL-------MSWDEHIMLIGHTVNCFGG--KIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhh-------CCHHHHHHHHHHHHHHhCC--CCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 3444445566776666444332111 2344444555544443101 134566665666666666666666777
Q ss_pred CCcEEEE
Q 012112 244 PKHVSVY 250 (471)
Q Consensus 244 p~his~y 250 (471)
++.+.+-
T Consensus 97 adav~~~ 103 (280)
T PLN02417 97 MHAALHI 103 (280)
T ss_pred CCEEEEc
Confidence 6655443
No 461
>PRK14847 hypothetical protein; Provisional
Probab=38.55 E-value=2.9e+02 Score=28.23 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=15.1
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHc
Q 012112 118 VFFGGGTPSLVPPRFVSSILDTLTDKF 144 (471)
Q Consensus 118 i~fGGGTps~l~~~~l~~ll~~l~~~~ 144 (471)
|-||.-..|--+++.+.++++.+.+..
T Consensus 174 V~~~~EDasRad~dfL~~~~~~a~~~~ 200 (333)
T PRK14847 174 YEYSPETFSLAELDFAREVCDAVSAIW 200 (333)
T ss_pred EEEeeecCCCCCHHHHHHHHHHHHHHh
Confidence 445544555556666666666554443
No 462
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.50 E-value=56 Score=32.46 Aligned_cols=57 Identities=14% Similarity=0.317 Sum_probs=42.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
++.|-+-- ++++++.+.++.++.. .-+|+. +.++.+.++.+.+.||+.||+|-=+.+
T Consensus 215 aDiI~LDn-----~s~e~l~~av~~~~~~--------~~leaS-GGI~~~ni~~yA~tGVD~Is~Galths 271 (281)
T PRK06106 215 VDAVLLDN-----MTPDTLREAVAIVAGR--------AITEAS-GRITPETAPAIAASGVDLISVGWLTHS 271 (281)
T ss_pred CCEEEeCC-----CCHHHHHHHHHHhCCC--------ceEEEE-CCCCHHHHHHHHhcCCCEEEeChhhcC
Confidence 56676642 4678888888866432 226665 469999999999999999999976654
No 463
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=38.45 E-value=2.2e+02 Score=24.33 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
|+.-|....+....++.+.+|.+.. .+...++.|.+.|||....
T Consensus 21 IL~~L~~~~~~~v~ela~~l~lsqs-tvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 21 IVLLLRESGELCVCDLCTALDQSQP-KISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHHHHcCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCceEEEE
Confidence 3344443456889999999998864 4778899999999998654
No 464
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=38.28 E-value=2.4e+02 Score=28.51 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCeeEEE-EcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC-----CCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 112 SPPLETVF-FGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT-----FDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 112 ~~~v~~i~-fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~-----l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
+++.+.|. =|+|.--+.+|+.+.++++++++..+ +..+|+-++-+. ...+..+.+.++|+.-|.+=
T Consensus 101 GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~---~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVH----- 172 (323)
T COG0042 101 GCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG---DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVH----- 172 (323)
T ss_pred CCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC---CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEe-----
Confidence 45544443 23445556789999999999999864 345666665443 34568899999999999883
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 186 DELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 186 d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
-+.....+.+. --.+.|..+++. +.+ +-+|.+=-=.|.++.++-|+. .+.|-|.+-
T Consensus 173 gRtr~~~y~~~---ad~~~I~~vk~~-~~~--ipvi~NGdI~s~~~a~~~l~~---tg~DgVMig 228 (323)
T COG0042 173 GRTRAQGYLGP---ADWDYIKELKEA-VPS--IPVIANGDIKSLEDAKEMLEY---TGADGVMIG 228 (323)
T ss_pred cccHHhcCCCc---cCHHHHHHHHHh-CCC--CeEEeCCCcCCHHHHHHHHHh---hCCCEEEEc
Confidence 33333333332 233455555554 221 334443211477776666544 445555444
No 465
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=38.19 E-value=4e+02 Score=26.15 Aligned_cols=99 Identities=7% Similarity=0.131 Sum_probs=62.8
Q ss_pred CeeEEEEcCCC--CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 114 PLETVFFGGGT--PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 114 ~v~~i~fGGGT--ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
+++-+++.|.| ...|+.++-.++++.+.+... ....+-+-+...+. +-+..+..+++|++-+.+....+-.
T Consensus 32 Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~--- 106 (285)
T TIGR00674 32 GTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN--GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNK--- 106 (285)
T ss_pred CCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCC---
Confidence 37888886654 455788888999988777643 23444444433332 2356677778899999887776521
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCC
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQ 227 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgq 227 (471)
.+.+++.+-.+.+.++ ++. + +||..|.-
T Consensus 107 ------~~~~~i~~~~~~i~~~~~~p---i-~lYn~P~~ 135 (285)
T TIGR00674 107 ------PTQEGLYQHFKAIAEEVDLP---I-ILYNVPSR 135 (285)
T ss_pred ------CCHHHHHHHHHHHHhcCCCC---E-EEEECcHH
Confidence 2456666666665544 444 3 57777753
No 466
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=38.14 E-value=4e+02 Score=26.18 Aligned_cols=29 Identities=10% Similarity=-0.065 Sum_probs=12.5
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVS 248 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his 248 (471)
+|.|.-+.+.++..+..+.+.+++++.+.
T Consensus 73 vi~gv~~~~~~~~i~~a~~a~~~G~d~v~ 101 (292)
T PRK03170 73 VIAGTGSNSTAEAIELTKFAEKAGADGAL 101 (292)
T ss_pred EEeecCCchHHHHHHHHHHHHHcCCCEEE
Confidence 34444333444444444444444444433
No 467
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=38.13 E-value=1.1e+02 Score=30.10 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=46.7
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
..+.+-|.- ..-+.++++...+.+.. .+.++|++|.+.||++.++ + ..+|| +
T Consensus 16 k~lLllL~e-gPkti~EI~~~l~vs~~-ai~pqiKkL~~~~LV~~~~-~------------------------~Y~LS-~ 67 (260)
T COG4742 16 KDLLLLLKE-GPKTIEEIKNELNVSSS-AILPQIKKLKDKGLVVQEG-D------------------------RYSLS-S 67 (260)
T ss_pred HHHHHHHHh-CCCCHHHHHHHhCCCcH-HHHHHHHHHhhCCCEEecC-C------------------------EEEec-c
Confidence 344555553 56899999999998865 4778999999999998653 2 46896 8
Q ss_pred hhhchHHHH
Q 012112 453 EGFLLSNEL 461 (471)
Q Consensus 453 ~G~~~~n~i 461 (471)
.|..+...+
T Consensus 68 ~G~iiv~km 76 (260)
T COG4742 68 LGKIIVEKM 76 (260)
T ss_pred hHHHHHHHH
Confidence 999988654
No 468
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.05 E-value=68 Score=31.11 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=43.6
Q ss_pred HHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 206 ~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
++|++.|.. ...|. -.-.+.+.+.++++.++++.++++|.++.+- +++ +.++...++....
T Consensus 21 RwAk~~gl~-----~~~GH-~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN----~~R---------~~~EV~~Lm~L~~ 81 (241)
T PRK14842 21 RWAESQGKK-----RSEGH-REGANAIDRLMDASLEYGLKNISLYAFSTEN----WKR---------PITEIRSIFGLLV 81 (241)
T ss_pred HHHHHCCCC-----hhHhH-HHHHHHHHHHHHHHHHcCCCEEEEEEeehhh----cCC---------CHHHHHHHHHHHH
Confidence 456666654 12232 2345788999999999999999999998763 221 3445555666666
Q ss_pred HHHHH
Q 012112 286 SMLSS 290 (471)
Q Consensus 286 ~~L~~ 290 (471)
+.|.+
T Consensus 82 ~~l~~ 86 (241)
T PRK14842 82 EFIET 86 (241)
T ss_pred HHHHH
Confidence 66655
No 469
>PLN02784 alpha-amylase
Probab=38.04 E-value=66 Score=36.92 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCCEEEEcc--CC-----CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 163 ARKMEELMDLGVNRVSLGV--QA-----FQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS-----~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
.+++..|+++|++.|-|.. +| +++.-+-.++-. -|.++..+.|+.+++.|+. |-+|++++.-+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIk-VIlDiViNH~a 594 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIK-VLGDAVLNHRC 594 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCE-EEEEECccccc
Confidence 4789999999999997764 22 233344445544 3889999999999999998 99999998743
No 470
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=38.01 E-value=2e+02 Score=29.24 Aligned_cols=141 Identities=8% Similarity=0.120 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC-------C-
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTF-------D- 162 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l-------~- 162 (471)
...+..|++.|..... .. . .+.+- .+|..++.+.++.+ ++. ++. ...+.++. ++..+ +
T Consensus 67 ~~~l~~ll~~i~~~~~---~~--~-eitiE-~nP~~~~~e~l~~l----~~~-Gvn-RiSiGvQS~~~~~L~~lgR~~~~ 133 (350)
T PRK08446 67 AKFYEPIFEIISPYLS---KD--C-EITTE-ANPNSATKAWLKGM----KNL-GVN-RISFGVQSFNEDKLKFLGRIHSQ 133 (350)
T ss_pred HHHHHHHHHHHHHhcC---CC--c-eEEEE-eCCCCCCHHHHHHH----HHc-CCC-EEEEecccCCHHHHHHcCCCCCH
Confidence 4566777777765411 11 1 12222 25766776555443 332 321 23344443 33222 1
Q ss_pred ---HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-----------CC
Q 012112 163 ---ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-----------QT 228 (471)
Q Consensus 163 ---~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-----------qT 228 (471)
.+.++.++++|+..|++-+=-.= -++|.+++.+.++.+.+.|.+.|++.-+.=.|| ..
T Consensus 134 ~~~~~ai~~lr~~g~~~v~iDli~Gl--------Pgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~ 205 (350)
T PRK08446 134 KQIIKAIENAKKAGFENISIDLIYDT--------PLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDD 205 (350)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCC--------CCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCH
Confidence 25666777888876665332211 247899999999999999999888766554444 12
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
.+.+....+.+.+.|-.+..+..+.
T Consensus 206 ~~~~~~~~~~l~~~Gy~~yeis~fa 230 (350)
T PRK08446 206 ENLAKFFIEQLEELGFKQYEISNFG 230 (350)
T ss_pred HHHHHHHHHHHHHCCCcEEEeehhh
Confidence 3445556666777787777665543
No 471
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=37.94 E-value=4e+02 Score=26.92 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC-----------------CCH----HHHHHHHHCCCCE----EEE
Q 012112 125 PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT-----------------FDA----RKMEELMDLGVNR----VSL 179 (471)
Q Consensus 125 ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~-----------------l~~----e~l~~l~~~Gvnr----vsi 179 (471)
+++=+.++++++.+..++. .....+.+.+||+. ++. +.++.+++.+++= ..+
T Consensus 95 ~~vds~~el~~l~~~~~~~---~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~~~~l~l~Gl~~H~ 171 (368)
T cd06810 95 IVVDSLDELERLNELAKKL---GPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKELDLRLVGLHFHV 171 (368)
T ss_pred EEeCCHHHHHHHHHHHHHh---CCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHHhCCCcEEEEEEcC
Confidence 3334566676665544332 23456777787763 232 4555556666431 256
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee--cCCCCC----CHHHHHHHHHHHHhCCCCcEEEEecc
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI--SSLPHQ----TPQMWEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI--~GlPgq----T~e~~~~~l~~~~~l~p~his~y~l~ 253 (471)
|-|..|.+... ...+++.+.++.+++.|+.---+|+= +|.|.. +.+++.+.+..+++--.....-..+.
T Consensus 172 gs~~~d~~~~~-----~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 246 (368)
T cd06810 172 GSQILDLETIV-----QALSDARELIEELVEMGFPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFPNDPGVTLI 246 (368)
T ss_pred CcCCCCHHHHH-----HHHHHHHHHHHHHHhcCCCCCEEEeCCCcccccCCCCCCHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 77776666554 33445555566666666541134442 344433 77888888877665321112224566
Q ss_pred ccCCChh
Q 012112 254 VEQGTKF 260 (471)
Q Consensus 254 ~~pgT~l 260 (471)
.|||.-+
T Consensus 247 ~EpGr~l 253 (368)
T cd06810 247 LEPGRYI 253 (368)
T ss_pred EecChhh
Confidence 7887654
No 472
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=37.91 E-value=4.9e+02 Score=27.16 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=67.4
Q ss_pred cEEEEEecCCCC-C-HHHH-------HHHHHCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe
Q 012112 150 AEISMEMDPGTF-D-ARKM-------EELMDLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL 218 (471)
Q Consensus 150 ~eitiE~~P~~l-~-~e~l-------~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~ 218 (471)
-.+++|++|..- + ++.+ +.+.+.|++ |+-|-|= .| .+-.+|++.+.+.|+. +|+
T Consensus 95 G~Vs~EVdprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIP-------------aT-~eGi~A~~~L~~~GI~-~n~ 159 (391)
T PRK12309 95 GRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIA-------------ST-WEGIKAAEVLEKEGIH-CNL 159 (391)
T ss_pred CCEEEEEecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeC-------------CC-HHHHHHHHHHHHCCCc-eee
Confidence 369999998532 2 2222 333445665 5655443 33 4557788889999997 999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCC-CCHHHHHHHHHHHHHHHHHCCCc
Q 012112 219 DLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPL-PTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 219 DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~-p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+||.+ .| ...+.+.+...||.|-=.+... ++. ..|.-.. +..+--......+.++.+..||.
T Consensus 160 TlvFS~-~Q--------A~aaaeAGa~~ISPfVgRi~dw---~~~-~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~ 223 (391)
T PRK12309 160 TLLFGF-HQ--------AIACAEAGVTLISPFVGRILDW---YKK-ETGRDSYPGAEDPGVQSVTQIYNYYKKFGYK 223 (391)
T ss_pred eeecCH-HH--------HHHHHHcCCCEEEeecchhhhh---hhh-ccCCCccccccchHHHHHHHHHHHHHhcCCC
Confidence 999975 22 2344557888898887544321 111 1222111 22223333455556667777874
No 473
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=37.88 E-value=4.5e+02 Score=26.65 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=53.1
Q ss_pred CHHHHHHHHHCCCC--EEEEccCCCCHHHHHH-cCCC------CCHHHHHHHHHHHHHcCCCeeEeeee-----------
Q 012112 162 DARKMEELMDLGVN--RVSLGVQAFQDELLKS-CGRA------HGLKEVYEAIEIVKLCGVENWSLDLI----------- 221 (471)
Q Consensus 162 ~~e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~-l~R~------~t~~~~~~ai~~~~~~G~~~v~~DlI----------- 221 (471)
+..-++.++++|++ +|.+.-...+++.++. +..+ .+.+++.+..+.+++.|-. +++-+-
T Consensus 58 S~~E~~~~~~~G~~~~~I~~~~p~k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~-~~v~lRv~~~~~~~~~~ 136 (373)
T cd06828 58 SGGELYRALKAGFPPERIVFTGNGKSDEELELALELGILRINVDSLSELERLGEIAPELGKG-APVALRVNPGVDAGTHP 136 (373)
T ss_pred CHHHHHHHHHcCCCcccEEEeCCCCCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCC-CeEEEEECCCCCCCCCC
Confidence 55556677788886 7777555555554443 3323 2677777777777765432 222111
Q ss_pred ---cCC----CCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 222 ---SSL----PHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 222 ---~Gl----PgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
.|. -|-+.+++.+.++.+.++ .++.+..+..+-|+
T Consensus 137 ~~~~g~~~srfGi~~~e~~~~~~~~~~~--~~l~l~Gi~~H~gs 178 (373)
T cd06828 137 YISTGGKDSKFGIPLEQALEAYRRAKEL--PGLKLVGLHCHIGS 178 (373)
T ss_pred CeecCCCCCCCCCCHHHHHHHHHHHHhC--CCCcEEEEEEecCC
Confidence 111 155677888888777663 23445555555555
No 474
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=37.76 E-value=3.5e+02 Score=26.74 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=66.3
Q ss_pred eeEEEEcCCC--CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHH
Q 012112 115 LETVFFGGGT--PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLK 190 (471)
Q Consensus 115 v~~i~fGGGT--ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~ 190 (471)
++.|+.+|.| ...|+.++-.++++.+.+..+ ....+-+-+.-.+. +-+..+..+++|++-+.+..-.+.
T Consensus 36 v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~----- 108 (290)
T TIGR00683 36 VDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK--DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYY----- 108 (290)
T ss_pred cCEEEECCcccccccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC-----
Confidence 7788888765 455799998999988777643 22334433321122 336667777889998888555432
Q ss_pred HcCCCCCHHHHHHHHHHHHH-c-CCCeeEeeeecCCCCCCHHHH-HHHHHHHHh
Q 012112 191 SCGRAHGLKEVYEAIEIVKL-C-GVENWSLDLISSLPHQTPQMW-EESLRRTVG 241 (471)
Q Consensus 191 ~l~R~~t~~~~~~ai~~~~~-~-G~~~v~~DlI~GlPgqT~e~~-~~~l~~~~~ 241 (471)
..+.+++.+-.+.+.+ . +.. + +||..|+.|--++ .+++..+.+
T Consensus 109 ----~~~~~~i~~yf~~v~~~~~~lp---v-~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 109 ----KFSFPEIKHYYDTIIAETGGLN---M-IVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred ----CCCHHHHHHHHHHHHhhCCCCC---E-EEEeCccccccCcCHHHHHHHhc
Confidence 2355666666666543 3 344 2 4788887653332 233444444
No 475
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=37.71 E-value=3.8e+02 Score=25.83 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc
Q 012112 113 PPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC 192 (471)
Q Consensus 113 ~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l 192 (471)
..++.|-+|+=.-|+... -+++.+.+++... +..+ -+-....++.|++.|+.||++.-
T Consensus 70 a~~dvi~~~cTsgs~~~G--~~~~~~~i~~~~~---g~p~------tt~~~A~~~AL~alg~~RIalvT----------- 127 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIG--DDEVTRAINAAKP---GTPV------VTPSSAAVDGLAALGVRRISLLT----------- 127 (239)
T ss_pred CCCCEEEEccchhheecC--HHHHHHHHHhcCC---CCCe------eCHHHHHHHHHHHcCCCEEEEEC-----------
Confidence 458888887533333221 2355666654211 1111 12356899999999999999842
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC------CCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 193 GRAHGLKEVYEAIEIVKLCGVENWSLDLISSL------PHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 193 ~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl------PgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
++..+-.....+.+.++||+-++..- +|+ ...+++++.+.+..+..-++|-|-+.
T Consensus 128 --PY~~~v~~~~~~~l~~~G~eV~~~~~-~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis 188 (239)
T TIGR02990 128 --PYTPETSRPMAQYFAVRGFEIVNFTC-LGLTDDREMARISPDCIVEAALAAFDPDADALFLS 188 (239)
T ss_pred --CCcHHHHHHHHHHHHhCCcEEeeeec-cCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe
Confidence 45556666677788899998444321 333 24577888777777766677766554
No 476
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=37.52 E-value=3.4e+02 Score=26.17 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=61.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC----C-------HHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF----D-------ARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l----~-------~e~l~~l~~~GvnrvsiGvQS 183 (471)
.+.+--||=|||+ -.++ .+.+.. ...+..-++|..- + .+.++..+++|+.-|-+|.=+
T Consensus 28 C~~La~GG~TPSy---G~~k----~a~~~~----~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt 96 (241)
T COG3142 28 CDALAEGGLTPSY---GVIK----EAVELS----KIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALT 96 (241)
T ss_pred hhccccCCCCCCH---HHHH----HHHhhc----CCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeec
Confidence 3456678888986 2333 333332 2356677788653 3 356777888999999999988
Q ss_pred CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEE
Q 012112 184 FQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVS 248 (471)
Q Consensus 184 ~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his 248 (471)
-|-++ +.+-..+.++.+. |.. |.+.--|- .+. +-.+.|+++.++++++|-
T Consensus 97 ~dg~i--------D~~~le~Li~aA~--gL~-vTFHrAFD---~~~-d~~~ale~li~~Gv~RIL 146 (241)
T COG3142 97 ADGNI--------DMPRLEKLIEAAG--GLG-VTFHRAFD---ECP-DPLEALEQLIELGVERIL 146 (241)
T ss_pred CCCcc--------CHHHHHHHHHHcc--CCc-eeeehhhh---hcC-CHHHHHHHHHHCCCcEEe
Confidence 65432 3333344444433 222 22222221 111 255677888888877663
No 477
>PRK14847 hypothetical protein; Provisional
Probab=37.47 E-value=4.6e+02 Score=26.73 Aligned_cols=106 Identities=10% Similarity=0.159 Sum_probs=67.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
+..+.|.++||+.|.+|.=+.++... ++++.+.+.+. .++. |.++-.-..+++..+++....
T Consensus 58 ~IA~~L~~lGVd~IEvG~Pa~s~~e~-------------e~ir~I~~~~~~~~~~~---i~~~~r~~~~dId~a~e~~~~ 121 (333)
T PRK14847 58 RLFEQLVAVGLKEIEVAFPSASQTDF-------------DFVRKLIDERRIPDDVT---IEALTQSRPDLIARTFEALAG 121 (333)
T ss_pred HHHHHHHHcCCCEEEeeCCCCCHHHH-------------HHHHHHHHhCCCCCCcE---EEEEecCcHHHHHHHHHHhCC
Confidence 45667788899999999888665443 34454444442 1122 344434456778888887777
Q ss_pred CCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 242 AQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 242 l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+...|.+|. |.++++...+-+ .+.++..++...+.++.++.|.
T Consensus 122 ~~~~~Vhi~~----p~Sd~h~~~kl~----~s~~~vl~~~~~~v~~Ak~~~~ 165 (333)
T PRK14847 122 SPRAIVHLYN----PIAPQWRRIVFG----MSRAEIKEIALAGTRQIRALAD 165 (333)
T ss_pred CCCCEEEEEe----cCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhcc
Confidence 7777788775 556665443222 2566777777778888888854
No 478
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=37.31 E-value=1.3e+02 Score=31.57 Aligned_cols=102 Identities=9% Similarity=0.310 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC-CCHHHHHHH
Q 012112 91 VSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT-FDARKMEEL 169 (471)
Q Consensus 91 ~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~-l~~e~l~~l 169 (471)
.+.|++ +.+|+... .+++|.|-+ ...+++|...-+|+..|++.+++ .+.+.++..+ +..-..-.-
T Consensus 155 ~e~yv~-~akel~~~--------g~DSIciKD-maGlltP~~ayelVk~iK~~~~~----pv~lHtH~TsG~a~m~ylkA 220 (472)
T COG5016 155 LEYYVE-LAKELLEM--------GVDSICIKD-MAGLLTPYEAYELVKAIKKELPV----PVELHTHATSGMAEMTYLKA 220 (472)
T ss_pred HHHHHH-HHHHHHHc--------CCCEEEeec-ccccCChHHHHHHHHHHHHhcCC----eeEEecccccchHHHHHHHH
Confidence 455554 56676543 268899865 44678999999999999999874 3555554321 334333334
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
.++|++.|.-.+-|++- |-.|. ..+..+..++..|.+
T Consensus 221 vEAGvD~iDTAisp~S~------gtsqP--~tEtmv~aL~gt~yD 257 (472)
T COG5016 221 VEAGVDGIDTAISPLSG------GTSQP--ATETMVAALRGTGYD 257 (472)
T ss_pred HHhCcchhhhhhccccC------CCCCC--cHHHHHHHhcCCCCC
Confidence 47899998766666542 33332 233445556665665
No 479
>PHA01735 hypothetical protein
Probab=37.21 E-value=75 Score=24.45 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=34.8
Q ss_pred CHHHHHHcCCCC-CHHHHHHHHHHHHHcCCCeeEee------eecCCCCCCHHHHHH
Q 012112 185 QDELLKSCGRAH-GLKEVYEAIEIVKLCGVENWSLD------LISSLPHQTPQMWEE 234 (471)
Q Consensus 185 ~d~~L~~l~R~~-t~~~~~~ai~~~~~~G~~~v~~D------lI~GlPgqT~e~~~~ 234 (471)
-++.++++.-+. |..+...|++++++.+|..|-+| |+--+|.-|.|++++
T Consensus 18 t~El~~RiksgeATtaDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~ 74 (76)
T PHA01735 18 TNELLSRIKSGEATTADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQE 74 (76)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHh
Confidence 356777776654 88999999999999999866544 233345556666554
No 480
>PRK12313 glycogen branching enzyme; Provisional
Probab=37.20 E-value=84 Score=34.97 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=44.5
Q ss_pred HHHHHHCCCCEEEEc-cCCC--------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 166 MEELMDLGVNRVSLG-VQAF--------QDELLKSCG-RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 166 l~~l~~~GvnrvsiG-vQS~--------~d~~L~~l~-R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
|..|+++|+|.|.|- |..+ +..-.-.+. +--+.++..+.|+.+++.|+. |-+|+++..-+.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~-VilD~V~nH~~~ 247 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIG-VILDWVPGHFPK 247 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCE-EEEEECCCCCCC
Confidence 599999999999753 3222 111222333 334789999999999999998 999999987654
No 481
>PRK05269 transaldolase B; Provisional
Probab=37.12 E-value=3.3e+02 Score=27.59 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHc-----CCCCCcEEEEEecCCC-CC-HHH-------HHHHHHCCCC--EEEEccCCCCHHHHHHcC
Q 012112 130 PRFVSSILDTLTDKF-----GLSLDAEISMEMDPGT-FD-ARK-------MEELMDLGVN--RVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~-----~l~~~~eitiE~~P~~-l~-~e~-------l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~ 193 (471)
.+.+...++.+.-.| .+-+ ..+++|++|.. .+ ++. .+.+.+.|++ ||-|-|=+
T Consensus 67 ~~~i~~a~d~l~v~~g~ei~~~i~-G~Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPa---------- 135 (318)
T PRK05269 67 AQQIDDAIDKLAVNFGLEILKLIP-GRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIAS---------- 135 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEecccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCC----------
Confidence 345555555555443 2222 36999999852 22 222 2333344664 46554433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccc
Q 012112 194 RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
| .+-.+|++.+.+.|+. +|+.+||.+ .| ...+.+.+..-||.|-=.+
T Consensus 136 ---T-~eGi~A~~~L~~~GI~-vn~TlvFs~-~Q--------a~~aa~AGa~~ISPfVgRi 182 (318)
T PRK05269 136 ---T-WEGIRAAEQLEKEGIN-CNLTLLFSF-AQ--------ARACAEAGVFLISPFVGRI 182 (318)
T ss_pred ---C-HHHHHHHHHHHHcCCc-eeEeEecCH-HH--------HHHHHHcCCCEEEeeccHH
Confidence 3 4456788888899997 999999976 12 2344556888888887444
No 482
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=37.05 E-value=67 Score=31.28 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=52.3
Q ss_pred HHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCC
Q 012112 165 KMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQP 244 (471)
Q Consensus 165 ~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p 244 (471)
..+.-++.|-+|+.+|. .-.+..||..+..++.+.|..++..|++ |.+.| |+-.| +.+.+++-
T Consensus 125 ~Ak~AK~~GSTRFCmGa-----AWRD~~GRk~~fk~IlE~ikevr~MgmE-vCvTL--GMv~~---------qQAkeLKd 187 (380)
T KOG2900|consen 125 EAKEAKRNGSTRFCMGA-----AWRDMKGRKSAFKRILEMIKEVRDMGME-VCVTL--GMVDQ---------QQAKELKD 187 (380)
T ss_pred HHHHHHhcCCceeecch-----hhhhhccchhHHHHHHHHHHHHHcCCce-eeeee--ccccH---------HHHHHHHh
Confidence 34556678999999994 5677789999999999999999999998 55543 54333 33444443
Q ss_pred CcEEEEecccc
Q 012112 245 KHVSVYDLQVE 255 (471)
Q Consensus 245 ~his~y~l~~~ 255 (471)
-.+..|.-.+.
T Consensus 188 AGLTAYNHNlD 198 (380)
T KOG2900|consen 188 AGLTAYNHNLD 198 (380)
T ss_pred ccceecccCcc
Confidence 34566765544
No 483
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=37.02 E-value=4.3e+02 Score=27.63 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEE-----ccCCCCHHHH---HHc-CC--
Q 012112 127 LVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD-ARKMEELMDLGVNRVSL-----GVQAFQDELL---KSC-GR-- 194 (471)
Q Consensus 127 ~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~-~e~l~~l~~~Gvnrvsi-----GvQS~~d~~L---~~l-~R-- 194 (471)
.-+++.+.++++.+++... ..+++-..|+.-+ .+..+.+.++|++-|++ +.-..|.+.+ -.+ +|
T Consensus 150 ~~~~~~~~~i~~~v~~~~~----~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~ 225 (420)
T PRK08318 150 GQVPELVEMYTRWVKRGSR----LPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSS 225 (420)
T ss_pred cCCHHHHHHHHHHHHhccC----CcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCC
Confidence 3578899999999988643 4688888886433 36777888999998883 1111111111 001 11
Q ss_pred --CCCHHH----HHHHHHHHHHc-CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCC
Q 012112 195 --AHGLKE----VYEAIEIVKLC-GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPG 267 (471)
Q Consensus 195 --~~t~~~----~~~ai~~~~~~-G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g 267 (471)
+.+... ..+.+..++++ +.. ++. |+|.=| ..++++-++.+. .+.+-|.+++-.+..|..
T Consensus 226 ~gg~SG~a~~p~~l~~v~~~~~~~~~~--~ip-Iig~GG--I~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~-------- 291 (420)
T PRK08318 226 HGGYCGPAVKPIALNMVAEIARDPETR--GLP-ISGIGG--IETWRDAAEFIL-LGAGTVQVCTAAMQYGFR-------- 291 (420)
T ss_pred cccccchhhhHHHHHHHHHHHhccccC--CCC-EEeecC--cCCHHHHHHHHH-hCCChheeeeeeccCCch--------
Confidence 223222 45666666664 111 122 233323 233344444444 899999998865554432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 268 EFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 268 ~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
...++.....++|.+.||..
T Consensus 292 --------ii~~I~~~L~~~l~~~g~~s 311 (420)
T PRK08318 292 --------IVEDMISGLSHYMDEKGFAS 311 (420)
T ss_pred --------hHHHHHHHHHHHHHHcCcch
Confidence 23345555667778888753
No 484
>PLN02417 dihydrodipicolinate synthase
Probab=36.93 E-value=4.2e+02 Score=26.03 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=61.1
Q ss_pred CeeEEEEcCCC--CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 114 PLETVFFGGGT--PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 114 ~v~~i~fGGGT--ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
+++-|+++|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. .-+..+..+++|++-+.+-.-.+
T Consensus 35 Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y----- 107 (280)
T PLN02417 35 GAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY----- 107 (280)
T ss_pred CCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC--CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc-----
Confidence 37888887755 566788888999988776533 22334433322222 23556666788999887765543
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
.+ .+.+++.+-.+.+.++. . | ++|..|+.|
T Consensus 108 ---~~-~~~~~i~~~f~~va~~~-p-i---~lYn~P~~t 137 (280)
T PLN02417 108 ---GK-TSQEGLIKHFETVLDMG-P-T---IIYNVPGRT 137 (280)
T ss_pred ---CC-CCHHHHHHHHHHHHhhC-C-E---EEEEChhHh
Confidence 12 35566766666666654 3 2 577777654
No 485
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=36.77 E-value=98 Score=29.94 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCCCCHHH---HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHH---HHHHHCCCCEEEEccCCCCHHHHHHcCCCCC
Q 012112 124 TPSLVPPRF---VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKM---EELMDLGVNRVSLGVQAFQDELLKSCGRAHG 197 (471)
Q Consensus 124 Tps~l~~~~---l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l---~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t 197 (471)
+||++..+. +..++..+.... .+.++++|+--++ .++++ +.+.+.| .++-+-| +.|
T Consensus 33 NPsll~k~g~~~~~~~~~~i~~~~---~~~~vs~EV~~~d-~~~m~~eA~~l~~~~-~nv~VKI-------------P~T 94 (236)
T TIGR02134 33 NPSLMRKAGIVDYEAFAHEALAQI---TDLPISFEVFADD-LDEMEKEARYIASWG-NNVNVKI-------------PVT 94 (236)
T ss_pred CHHHHHhcCCCCHHHHHHHHHHHc---cCCcEEEEEecCC-HHHHHHHHHHHHhcC-CCeEEEE-------------CCc
Confidence 477665432 445555554443 2457999985433 23333 3334444 2343322 233
Q ss_pred H---HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHH--HHHhCC-CCcEEEEe
Q 012112 198 L---KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLR--RTVGAQ-PKHVSVYD 251 (471)
Q Consensus 198 ~---~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~--~~~~l~-p~his~y~ 251 (471)
. +...++++.+.+.|++ +|+.+||.. . +-+. .+...+ ++.||.|-
T Consensus 95 ~~~G~~~l~ai~~L~~~GI~-vn~T~vfs~-~-------Qa~~aa~A~~aG~a~yispfv 145 (236)
T TIGR02134 95 NTKGESTGPLIQKLSADGIT-LNVTALTTI-E-------QVEKVCQSFTDGVPGIVSVFA 145 (236)
T ss_pred CcccchHHHHHHHHHHCCCc-EEeehcCCH-H-------HHHHHHHHHhCCCCeEEEEec
Confidence 2 3468899999999998 999999964 1 2222 233467 68888885
No 486
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=36.68 E-value=1.5e+02 Score=24.59 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEE
Q 012112 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 117 ~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
.+++|=|++.- ..+.+..+.+.+++..+ ....--++|..|. -++.++.+.+.|+++|-+
T Consensus 3 illvgHGSr~~-~~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~--i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 3 VVFMGHGTDHP-SNAVYAALEYVLREEDP-ANVFVGTVEGYPG--LDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred EEEEECCCCch-hhhHHHHHHHHHHhcCC-CcEEEEEEcCCCC--HHHHHHHHHHcCCCEEEE
Confidence 36778888753 24667777777766532 2222356676664 378888889999999866
No 487
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=36.67 E-value=3.5e+02 Score=29.06 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=80.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHc--
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSC-- 192 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l-- 192 (471)
++.|.+- .+- -.+..+.++++.|++.|+ ++++-+ -.-.|.+..+.|.++|++-|.+|+-+++--..+.+
T Consensus 238 Vd~i~~D-~a~--g~~~~~~~~i~~i~~~~~---~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~ 308 (475)
T TIGR01303 238 VDVLVID-TAH--GHQVKMISAIKAVRALDL---GVPIVA---GNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTG 308 (475)
T ss_pred CCEEEEe-CCC--CCcHHHHHHHHHHHHHCC---CCeEEE---eccCCHHHHHHHHHhCCCEEEECCcCCccccCccccC
Confidence 5556663 222 244778888899998762 344444 12469999999999999999999998766655433
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 193 -GRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 193 -~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+++ +..-+.++.+.+++.|+. |-.|-=+-.|| ++-.++.++.+.+.+-.
T Consensus 309 ~g~~-~~~a~~~~~~~~~~~~~~-viadGgi~~~~--------di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 309 VGRP-QFSAVLECAAEARKLGGH-VWADGGVRHPR--------DVALALAAGASNVMVGS 358 (475)
T ss_pred CCCc-hHHHHHHHHHHHHHcCCc-EEEeCCCCCHH--------HHHHHHHcCCCEEeech
Confidence 333 466677788888888876 55555444443 56677888888776544
No 488
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=36.67 E-value=4.8e+02 Score=26.68 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCC--CcEEEEEecCCCC--CHHHHHHHHH---C-CCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSL--DAEISMEMDPGTF--DARKMEELMD---L-GVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~--~~eitiE~~P~~l--~~e~l~~l~~---~-GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
|..+.+...++.+...|.... +..+++|++|..- +++.++.-++ . |-.++-|-| ....
T Consensus 67 l~~~di~~a~d~l~p~~~~~~g~~G~Vs~EVdP~la~d~~~~i~~A~~L~~~i~~~nv~IKI--------------PaT~ 132 (338)
T cd00955 67 LAIEDIQDACDLLAPVYEQTGGNDGYVSLEVSPRLADDTQGTIAEAKRLWKAVGRPNLMIKI--------------PATE 132 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecccccCCHHHHHHHHHHHHHhcCCCcEEEEe--------------CCCH
Confidence 344667777888877776553 4479999998533 2333333222 1 222343332 2235
Q ss_pred HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHH---HHHHHHHhCC
Q 012112 200 EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE---ESLRRTVGAQ 243 (471)
Q Consensus 200 ~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~---~~l~~~~~l~ 243 (471)
+-.+|++.+.+.|+. +|+.+||.+ .|-..-.+ +-++...+.+
T Consensus 133 ~Gi~Ai~~L~~~GI~-vn~TliFs~-~Qa~~aa~A~~~Gl~~~~~~g 177 (338)
T cd00955 133 AGLPAIEELIAAGIS-VNVTLIFSL-EQYEAVAEAYLRGLERRVEGG 177 (338)
T ss_pred HHHHHHHHHHHCCCc-eeEeeecCH-HHHHHHHHHHHhhHHHHHhcC
Confidence 667889999999997 999999986 55443333 3444444443
No 489
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=36.45 E-value=97 Score=29.87 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=55.3
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCH---------HHHHHcCCCCCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCCCHH-
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQD---------ELLKSCGRAHGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQTPQ- 230 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d---------~~L~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgqT~e- 230 (471)
..+.++.+.++|++.+.+|+-..|+ ...+++..+.+.+...+.++.+|+. .+. +-+|.=+ ..-..
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p---v~lm~y~-n~~~~~ 91 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP---IVLMGYY-NPILQY 91 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC---EEEEEec-CHHHHh
Confidence 3466788888999999999644332 2356778888899999999999876 333 3343221 11011
Q ss_pred HHHHHHHHHHhCCCCcEEEEe
Q 012112 231 MWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~his~y~ 251 (471)
.+.+-++.+.+.+++.+.+-.
T Consensus 92 G~~~fi~~~~~aG~~giiipD 112 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD 112 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC
Confidence 134457777888888666543
No 490
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=36.43 E-value=4.4e+02 Score=26.18 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=14.1
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
+|.|.-+ +.++..+..+.+.+++++.+.+
T Consensus 79 vi~gv~~-~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 79 VIAGAGG-GTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred EEEecCC-CHHHHHHHHHHHHHhCCCEEEE
Confidence 4444432 4444555555555555554443
No 491
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=36.36 E-value=1.4e+02 Score=35.84 Aligned_cols=80 Identities=8% Similarity=0.082 Sum_probs=52.4
Q ss_pred cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC-------CCCCCH
Q 012112 157 DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS-------LPHQTP 229 (471)
Q Consensus 157 ~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G-------lPgqT~ 229 (471)
.|+++-+..++..++.|++.+-+ +.++|+ .+.+..+++.++++|.. +..-+.|- -|--|.
T Consensus 622 ypd~vv~~f~~~~~~~Gidifri-fD~lN~-----------~~n~~~~~~~~~~~g~~-~~~~i~yt~~~~d~~~~~~~l 688 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQGGIDIFRV-FDSLNW-----------VENMRVGMDAVAEAGKV-VEAAICYTGDILDPARPKYDL 688 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-CccCcC-----------HHHHHHHHHHHHHcCCE-EEEEEEEeccCCCcCCCCCCH
Confidence 46666677777778888887766 555543 56667777777777764 55555553 344456
Q ss_pred HHHHHHHHHHHhCCCCcEEE
Q 012112 230 QMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 230 e~~~~~l~~~~~l~p~his~ 249 (471)
+-+.+..+.+.+++++.|++
T Consensus 689 ~y~~~~ak~l~~~Gad~I~i 708 (1143)
T TIGR01235 689 KYYTNLAVELEKAGAHILGI 708 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 66777777777777766544
No 492
>PRK07945 hypothetical protein; Provisional
Probab=36.18 E-value=1.4e+02 Score=30.48 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCC----CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGT----FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~----l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
+.++++++++. .+.+|+|-.. .+.+.++..++.|+. |++|=.+=.++.+ ..+..+++.+
T Consensus 247 ~~~i~~a~~e~-------g~~lEINt~~~r~~P~~~il~~a~e~G~~-vtigSDAH~p~~v---------~~~~~~~~~a 309 (335)
T PRK07945 247 AEAVFAACREH-------GTAVEINSRPERRDPPTRLLRLALDAGCL-FSIDTDAHAPGQL---------DWLGYGCERA 309 (335)
T ss_pred HHHHHHHHHHh-------CCEEEEeCCCCCCCChHHHHHHHHHcCCe-EEecCCCCChhhc---------chHHHHHHHH
Confidence 57777777764 3566665432 356899999999984 8998877433322 1235688899
Q ss_pred HHcCCC
Q 012112 209 KLCGVE 214 (471)
Q Consensus 209 ~~~G~~ 214 (471)
+++|++
T Consensus 310 ~~~g~~ 315 (335)
T PRK07945 310 EEAGVP 315 (335)
T ss_pred HHcCCC
Confidence 999986
No 493
>PRK13753 dihydropteroate synthase; Provisional
Probab=36.15 E-value=1.1e+02 Score=30.46 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHCCCcee
Q 012112 276 QSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 276 ~~~~~~~~~~~~L~~~Gy~~y 296 (471)
+..+.+..-.+.+.++|-.+.
T Consensus 148 ev~~~l~~~i~~~~~~Gi~~~ 168 (279)
T PRK13753 148 EIVRFFEARVSALRRSGVAAD 168 (279)
T ss_pred HHHHHHHHHHHHHHHcCCChh
Confidence 455566667777888887654
No 494
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=36.14 E-value=3.5e+02 Score=25.07 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMD 171 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~ 171 (471)
+.|.+.+.+-++..+.. .++.+.+|. . .+.. ...-++.+-+..++..-.. +.-. =.++.++.|.+
T Consensus 71 e~~~~~l~~~l~~~~~~-----g~~~vv~G~-i---~sd~-~~~~~e~~~~~~gl~~~~P--LW~~---~~~~ll~e~~~ 135 (194)
T cd01994 71 EDEVEDLKELLRKLKEE-----GVDAVVFGA-I---LSEY-QRTRVERVCERLGLEPLAP--LWGR---DQEELLREMIE 135 (194)
T ss_pred hHHHHHHHHHHHHHHHc-----CCCEEEECc-c---ccHH-HHHHHHHHHHHcCCEEEec--ccCC---CHHHHHHHHHH
Confidence 44556665555544332 377888874 2 2322 2222333333334321111 1111 14789999999
Q ss_pred CCCCEEEEccCC--CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 172 LGVNRVSLGVQA--FQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 172 ~GvnrvsiGvQS--~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
.|+.-+-+.|-+ +++ +.+||..+.+-+.+ .+..+..|+.
T Consensus 136 ~g~~~~iv~v~~~~L~~---~~lG~~~~~~~~~~-~~~~~~~g~~ 176 (194)
T cd01994 136 AGFKAIIIKVAAEGLDE---SWLGREIDEMFIEL-LELNEKYGVD 176 (194)
T ss_pred cCCeEEEEEeccCCCCH---HHCCCCccHhhHHH-HHhhhhcCcC
Confidence 999977666665 343 67999988776665 5666666764
No 495
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.83 E-value=1.3e+02 Score=31.83 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=53.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC-------------CHH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ-------------TPQ 230 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq-------------T~e 230 (471)
+.++.++++|+..|++.+--.- -++|.+++.+.++.+.+.|.+.|++.-..+.|+. +.+
T Consensus 191 ~ai~~l~~~G~~~v~~dli~Gl--------Pgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~ 262 (453)
T PRK09249 191 ALVEAARELGFTSINIDLIYGL--------PKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPE 262 (453)
T ss_pred HHHHHHHHcCCCcEEEEEEccC--------CCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHH
Confidence 4566777778766666544321 2578999999999999999998888765443431 223
Q ss_pred H----HHHHHHHHHhCCCCcEEEEecc
Q 012112 231 M----WEESLRRTVGAQPKHVSVYDLQ 253 (471)
Q Consensus 231 ~----~~~~l~~~~~l~p~his~y~l~ 253 (471)
. +....+.+.+.+-.+.++..+.
T Consensus 263 ~~~~~~~~~~~~L~~~Gy~~ye~s~fa 289 (453)
T PRK09249 263 EKLAILQQTIETLTEAGYQYIGMDHFA 289 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEecccee
Confidence 3 3444555666677666665554
No 496
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.77 E-value=4.2e+02 Score=25.74 Aligned_cols=119 Identities=12% Similarity=0.059 Sum_probs=63.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CC---CEEEEccC--CCCHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GV---NRVSLGVQ--AFQDE 187 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--Gv---nrvsiGvQ--S~~d~ 187 (471)
.+-|-+|++....-..+.+.+++..+++.. +..+++. +.+.+.++.--+. |. |.||. .+ .-.++
T Consensus 40 AdiIDIG~~~~~~~~~ee~~r~v~~i~~~~----~~piSID----T~~~~v~e~aL~~~~G~~iINsIs~-~~~~e~~~~ 110 (252)
T cd00740 40 AQILDLNVDYGGLDGVSAMKWLLNLLATEP----TVPLMLD----STNWEVIEAGLKCCQGKCVVNSINL-EDGEERFLK 110 (252)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCcEEee----CCcHHHHHHHHhhCCCCcEEEeCCC-CCCccccHH
Confidence 567778887543323467777777777653 2345554 5566666655554 64 34442 11 11344
Q ss_pred HHHHcC-------------C--CCCHHH----HHHHHHHHH-HcCC--CeeEeeeecCCCCC-CHH---HHHHHHHHHHh
Q 012112 188 LLKSCG-------------R--AHGLKE----VYEAIEIVK-LCGV--ENWSLDLISSLPHQ-TPQ---MWEESLRRTVG 241 (471)
Q Consensus 188 ~L~~l~-------------R--~~t~~~----~~~ai~~~~-~~G~--~~v~~DlI~GlPgq-T~e---~~~~~l~~~~~ 241 (471)
++..+. + ..+.++ +.+.++.+. +.|+ +++-+|-.+|+++- +.+ ...++++.+..
T Consensus 111 ~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~ 190 (252)
T cd00740 111 VARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRM 190 (252)
T ss_pred HHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHH
Confidence 433211 1 223332 333444444 4465 35889999997763 333 34555555554
Q ss_pred C
Q 012112 242 A 242 (471)
Q Consensus 242 l 242 (471)
+
T Consensus 191 ~ 191 (252)
T cd00740 191 I 191 (252)
T ss_pred H
Confidence 3
No 497
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.76 E-value=89 Score=30.16 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=44.9
Q ss_pred HHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 206 ~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
++|++.|.+ ...|. -+-.+.+.+.++++.++++..+|+|.|+.+- +++ +.++...++....
T Consensus 17 RwA~~~gl~-----~~~GH-~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN----~~R---------~~~Ev~~Lm~L~~ 77 (233)
T PRK14833 17 RWAKLRGKA-----RAAGH-KKGVKTLREITIWCANHKLECLTLYAFSTEN----WKR---------PKSEVDFLMKLLK 77 (233)
T ss_pred HHHHHCCCC-----hhhhH-HHHHHHHHHHHHHHHHcCCCEEEEeecchhh----cCc---------CHHHHHHHHHHHH
Confidence 456777765 23343 3456889999999999999999999998763 221 2345555666666
Q ss_pred HHHHH
Q 012112 286 SMLSS 290 (471)
Q Consensus 286 ~~L~~ 290 (471)
+.|.+
T Consensus 78 ~~l~~ 82 (233)
T PRK14833 78 KYLKD 82 (233)
T ss_pred HHHHH
Confidence 66654
No 498
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=35.52 E-value=2e+02 Score=30.22 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=53.4
Q ss_pred cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHHHHHH
Q 012112 157 DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQMWEES 235 (471)
Q Consensus 157 ~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~~~~~ 235 (471)
.|+++-+..++...+.|++-+-+ +. +|| +...+..+++.+++.|-. +-.-+-|-. |-.|.+-|.+-
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRi-FD--------AlN---D~RNl~~ai~a~kk~G~h-~q~~i~YT~sPvHt~e~yv~~ 161 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRI-FD--------ALN---DVRNLKTAIKAAKKHGAH-VQGTISYTTSPVHTLEYYVEL 161 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEe-ch--------hcc---chhHHHHHHHHHHhcCce-eEEEEEeccCCcccHHHHHHH
Confidence 34444445555555566554433 22 222 345567788888888874 554444443 77899999999
Q ss_pred HHHHHhCCCCcEEEEe
Q 012112 236 LRRTVGAQPKHVSVYD 251 (471)
Q Consensus 236 l~~~~~l~p~his~y~ 251 (471)
.+.+.++++|.|.+=.
T Consensus 162 akel~~~g~DSIciKD 177 (472)
T COG5016 162 AKELLEMGVDSICIKD 177 (472)
T ss_pred HHHHHHcCCCEEEeec
Confidence 9999999999887654
No 499
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=35.47 E-value=1.5e+02 Score=29.30 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=43.7
Q ss_pred CHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEE
Q 012112 185 QDELLKSCGR-AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVS 248 (471)
Q Consensus 185 ~d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his 248 (471)
|++.++.+|+ +-+.+..-+.++.+.++|-+.|.+|+++.-|+.+..+-.+.+..+++-..+.+.
T Consensus 49 D~~Sl~~~g~~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~~~~~~~D~~la~al~~~~~~vv 113 (310)
T PF05226_consen 49 DDESLAELGRWPWPRSVYARLLDRLAAAGAKAIGFDILFDEPDPSNPEGDQALAEALRRAGNRVV 113 (310)
T ss_pred CHHHHHHhCCCCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCchHHHHHHHHHHhCCCeEE
Confidence 5555667777 346778889999999999999999999999954433344444444444443343
No 500
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.47 E-value=79 Score=30.87 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
-.+.+.+.++++.++++.++++|.+..+-
T Consensus 51 G~~~l~~~l~~c~~~GI~~vTvYaFS~eN 79 (251)
T PRK14830 51 GMDTVKKITKAASELGVKVLTLYAFSTEN 79 (251)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEehhh
Confidence 35788999999999999999999988763
Done!